Citrus Sinensis ID: 018083
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 361 | ||||||
| 224069876 | 575 | predicted protein [Populus trichocarpa] | 0.867 | 0.544 | 0.674 | 1e-118 | |
| 255580517 | 419 | ATP binding protein, putative [Ricinus c | 0.875 | 0.754 | 0.637 | 1e-114 | |
| 225470035 | 384 | PREDICTED: uncharacterized protein LOC10 | 0.831 | 0.781 | 0.677 | 1e-113 | |
| 449464106 | 436 | PREDICTED: uncharacterized protein LOC10 | 0.850 | 0.704 | 0.639 | 1e-109 | |
| 356567802 | 429 | PREDICTED: uncharacterized protein LOC10 | 0.997 | 0.839 | 0.533 | 1e-100 | |
| 357505165 | 475 | hypothetical protein MTR_7g055720 [Medic | 0.916 | 0.696 | 0.559 | 3e-99 | |
| 388500938 | 474 | unknown [Medicago truncatula] | 0.916 | 0.698 | 0.559 | 4e-99 | |
| 357505167 | 487 | hypothetical protein MTR_7g055730 [Medic | 0.916 | 0.679 | 0.553 | 6e-99 | |
| 297790788 | 479 | hypothetical protein ARALYDRAFT_497092 [ | 0.786 | 0.592 | 0.551 | 6e-83 | |
| 42570140 | 479 | P-loop containing nucleoside triphosphat | 0.786 | 0.592 | 0.525 | 2e-77 |
| >gi|224069876|ref|XP_002303066.1| predicted protein [Populus trichocarpa] gi|222844792|gb|EEE82339.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/316 (67%), Positives = 246/316 (77%), Gaps = 3/316 (0%)
Query: 49 EGSRDSWDSL---VDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVG 105
EGSR L +Q++ +REVLQSYDQL+ R SL + K+KILSYTPG W+ENV
Sbjct: 84 EGSRIPSSFLELQANQKKASTAYREVLQSYDQLKDRSKSLEEGKSKILSYTPGGWMENVI 143
Query: 106 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165
GM LSD+DVP TT LL+IGPKGSGKSSL+NRISKVFE+DKFASERAQV+YNSS DGTYF
Sbjct: 144 GMKLSDFDVPNTTVLLVIGPKGSGKSSLINRISKVFEDDKFASERAQVSYNSSAADGTYF 203
Query: 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMR 225
LQEY IPR S+SF LYDTR LS D+ D+ NM+K WI +GV H EL+IR SD+S LRN+M+
Sbjct: 204 LQEYMIPRSSSSFCLYDTRGLSYDSYDSANMLKNWITKGVHHRELIIRPSDNSHLRNQMK 263
Query: 226 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 285
CKA GC+ R V FVIFVVDGLAVLKSM+ D K+Y Q++A TF+CPY+SF DD
Sbjct: 264 CKARGNGCQSKETRMVTFVIFVVDGLAVLKSMDNLVDEGKKYTQMIAKTFDCPYISFNDD 323
Query: 286 KPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLE 345
KPVVVVTHGDLLSL DRAR+R +LGELLGIPPAKQIFDIPES DP EL IV+ML Y LE
Sbjct: 324 KPVVVVTHGDLLSLNDRARVRVHLGELLGIPPAKQIFDIPESHDPVTELTIVNMLHYSLE 383
Query: 346 HADRNLSCKSCARNKV 361
HAD+NL K KV
Sbjct: 384 HADKNLPHKRQIAKKV 399
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580517|ref|XP_002531083.1| ATP binding protein, putative [Ricinus communis] gi|223529329|gb|EEF31297.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/320 (63%), Positives = 242/320 (75%), Gaps = 4/320 (1%)
Query: 36 NNNNNLSMNSGDDEGSR----DSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNK 91
N L+ ++ G R S + +QR++ F+E+LQSYDQLR+R SL +AK+K
Sbjct: 42 NEEYGLAFGEFEEVGCRVLSPTSLEVEANQRKKWKAFKELLQSYDQLRSRAESLDEAKSK 101
Query: 92 ILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 151
ILSYTPG W E VGGM LSDY+VPKTT+LLL+GP+GSGKSSLVNRISKVF++DKFA ERA
Sbjct: 102 ILSYTPGGWKEKVGGMKLSDYNVPKTTTLLLVGPRGSGKSSLVNRISKVFDDDKFAPERA 161
Query: 152 QVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 211
QV+YN S G+GTYFLQEY IP S SF LYDTR D++ DNI M+K W+ GV HGEL
Sbjct: 162 QVSYNPSAGEGTYFLQEYMIPGCSTSFCLYDTRGFFDNSYDNIEMLKYWMTRGVCHGELT 221
Query: 212 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 271
+R+ D SSLR RM+CK G + R VNFVIFVV+GLAVLKSM + + QY ++
Sbjct: 222 VRKCDDSSLRTRMKCKVRYNGSQSKKNRTVNFVIFVVNGLAVLKSMGSEVEKGNQYTDMI 281
Query: 272 ATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331
A+ FNCPY SF+DDKPVVVVTHGDLLSL+DR RIR +LGELLGIPPAKQIFDIPES DP
Sbjct: 282 ASAFNCPYASFKDDKPVVVVTHGDLLSLSDRTRIRVHLGELLGIPPAKQIFDIPESCDPV 341
Query: 332 NELIIVDMLRYCLEHADRNL 351
EL I+DMLRY LEHAD NL
Sbjct: 342 TELTIIDMLRYSLEHADNNL 361
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470035|ref|XP_002265228.1| PREDICTED: uncharacterized protein LOC100246086 [Vitis vinifera] gi|297741779|emb|CBI33051.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/301 (67%), Positives = 237/301 (78%), Gaps = 1/301 (0%)
Query: 61 QRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSL 120
QRRR V+ ++LQSYD +R R +L AK++ILSYTPGAWIE GGM SDY+VP+TTSL
Sbjct: 28 QRRRSLVYSQILQSYDDVRIRTNALEKAKSRILSYTPGAWIEMSGGMKFSDYNVPETTSL 87
Query: 121 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 180
+L+GPKGSGKSSL+N+IS+VFE+DKFA ERAQV+YN SVGDGTYFLQEY IPRGS SF L
Sbjct: 88 ILVGPKGSGKSSLINKISRVFEDDKFAPERAQVSYNLSVGDGTYFLQEYMIPRGSTSFCL 147
Query: 181 YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240
YDTR LSD +SDN+ M+K WI +GVRHGEL IR SDS S+R RM+CKA + G S R
Sbjct: 148 YDTRGLSDVSSDNMQMLKHWITKGVRHGELAIRNSDSPSIRARMKCKARQSGYNSSKTRL 207
Query: 241 VNFVIFVVDGLAVLKSMEGDSDVEKQ-YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSL 299
VNFVIFVV+GL+VLKS++ D Q Y Q +A F CPYLSFRDD PVVVVTHGDLLSL
Sbjct: 208 VNFVIFVVNGLSVLKSIDSCDDGASQFYIQTIAEMFCCPYLSFRDDMPVVVVTHGDLLSL 267
Query: 300 TDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCKSCARN 359
+DRAR+R +LGE LGI P KQIFDIPES EL I+DMLRY LEHADRNL CK +
Sbjct: 268 SDRARVRVHLGEHLGISPGKQIFDIPESCGKATELTIIDMLRYSLEHADRNLPCKGWFLD 327
Query: 360 K 360
K
Sbjct: 328 K 328
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464106|ref|XP_004149770.1| PREDICTED: uncharacterized protein LOC101208586 [Cucumis sativus] gi|449520910|ref|XP_004167475.1| PREDICTED: uncharacterized protein LOC101225331 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/308 (63%), Positives = 239/308 (77%), Gaps = 1/308 (0%)
Query: 47 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGG 106
+ E S + D + + RR+ V RE+++SYDQLR R +L AK KILSY+PGAWIE VGG
Sbjct: 67 ESEYSSAALDVDICRMRRNRVHREIIESYDQLRIRSENLNQAKQKILSYSPGAWIEQVGG 126
Query: 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166
M LSDYD+P+TTSL+LIGPKGSGKSSL+NRISKVFE D FA ERAQV+ NSS DGT+FL
Sbjct: 127 MKLSDYDIPQTTSLILIGPKGSGKSSLINRISKVFEEDHFAPERAQVSCNSSGEDGTFFL 186
Query: 167 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 226
EY I R S SF LYDTR LS+D SDNI M+K W+ +GV HG+LV R+SD+SSL NRMRC
Sbjct: 187 HEYMILRKSKSFCLYDTRGLSNDPSDNIEMLKQWMSKGVHHGKLVTRKSDASSLINRMRC 246
Query: 227 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDK 286
KA + V+R +NFVIFVVDGL+VLKS++GD D +K Y++++ T FNCPYLS+ DDK
Sbjct: 247 KARQSFPRSRVVRIINFVIFVVDGLSVLKSIDGD-DKQKDYDRVITTAFNCPYLSYGDDK 305
Query: 287 PVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEH 346
PVVV+THGDLLS + R+R +LG LLGIP KQIFDIP+ DP EL I+DML YCLEH
Sbjct: 306 PVVVLTHGDLLSFAENVRVRGHLGNLLGIPSTKQIFDIPDRYDPVTELTIIDMLHYCLEH 365
Query: 347 ADRNLSCK 354
AD+NL K
Sbjct: 366 ADKNLPPK 373
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567802|ref|XP_003552104.1| PREDICTED: uncharacterized protein LOC100783278 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/375 (53%), Positives = 254/375 (67%), Gaps = 15/375 (4%)
Query: 1 MGGEKTTSRFFTPEG---EEIISPVDDFDIPLLRNN---SNNNN-----NNLSMNSGDDE 49
MGG+ S T EG EE + P LR+N + +N N L+ + D+E
Sbjct: 1 MGGDSIVSHG-TDEGSCLEENFPLLSSHSSPALRDNLGLQDEDNRMKAENGLTCSETDEE 59
Query: 50 GSRDS-WDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMT 108
S D V++RRR ++E+LQ D+L+ L K KIL Y PGAWIE GG+
Sbjct: 60 IIHPSRVDFEVNERRRVINYQEILQCCDELKIHSKDLKREKQKILRYKPGAWIEKAGGLK 119
Query: 109 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 168
+SDYDVPKTT LLL+GP+GSGKSSL+NRISKV E+D+FA RAQ +YNS +GDGT FLQE
Sbjct: 120 ISDYDVPKTTCLLLVGPRGSGKSSLINRISKVVEDDRFAPARAQESYNSLLGDGTSFLQE 179
Query: 169 YTIPRGSNSFSLYDTRSLSDDAS--DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 226
Y IPR SNS LYDTRSLSD++ +NI M+K W+ +GV HGELV+R++D+ LR ++
Sbjct: 180 YMIPRYSNSICLYDTRSLSDNSEKDENIRMLKSWMTKGVHHGELVVRKTDNQRLRKSLKG 239
Query: 227 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDK 286
KAHK G S RKVNFVI+VV+GL VLK+ME D +E Q Q + +TFNCP+LSF+DDK
Sbjct: 240 KAHKKGYLSSKTRKVNFVIYVVNGLLVLKAMENDGALETQCVQSIVSTFNCPFLSFKDDK 299
Query: 287 PVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEH 346
PV+V THGDLLS ++RA +R +LG LLGIPP KQIFDIP+ P E I+ MLRY L H
Sbjct: 300 PVLVFTHGDLLSFSERALVREHLGTLLGIPPTKQIFDIPDCDCPATESAIIGMLRYSLAH 359
Query: 347 ADRNLSCKSCARNKV 361
ADR+ +S +KV
Sbjct: 360 ADRHFPQRSKVMDKV 374
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505165|ref|XP_003622871.1| hypothetical protein MTR_7g055720 [Medicago truncatula] gi|355497886|gb|AES79089.1| hypothetical protein MTR_7g055720 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 187/334 (55%), Positives = 235/334 (70%), Gaps = 3/334 (0%)
Query: 31 RNNSNNNNNNLSMNSGDDE--GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDA 88
++NS N N L +E + + DS++ +R+R +++E+LQSYD L+ +L +A
Sbjct: 42 KDNSVNEKNELDFGEVSEESVATSSAADSVIGERKRLGIYQEILQSYDALKIDSKNLKEA 101
Query: 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS 148
K KILSY PG W E G+ L DYDVP+TT LLL+GP GSGKSSL+NRISKVF+ DKFA
Sbjct: 102 KEKILSYRPGTWTEKAKGLKLCDYDVPETTCLLLVGPSGSGKSSLINRISKVFDEDKFAP 161
Query: 149 ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG 208
RAQV+YNS G+GT FL+EY IPR SNS LYDTRSLSDD+ +N M+K W+ +GVRHG
Sbjct: 162 ARAQVSYNSIRGNGTCFLREYMIPRDSNSICLYDTRSLSDDSHENNKMLKNWMTKGVRHG 221
Query: 209 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQY 267
ELV R D L ++ K K G S RKVN+VI V++GL+VL +E +E+ Y
Sbjct: 222 ELVARGMDDKRLSKNLKLKGDKKGFFSSKSRKVNYVICVLNGLSVLNVIENAGGALEEWY 281
Query: 268 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327
Q + +TFNCP+LSF+DDKPV+V+THGDLLSL+DRAR+R YLGELLGIPP KQIFDIP+
Sbjct: 282 IQQIVSTFNCPFLSFKDDKPVLVLTHGDLLSLSDRARVRAYLGELLGIPPTKQIFDIPDC 341
Query: 328 SDPENELIIVDMLRYCLEHADRNLSCKSCARNKV 361
D E IV MLRY LEHAD N KS NK+
Sbjct: 342 DDLVTESAIVGMLRYTLEHADGNFPQKSNVMNKI 375
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500938|gb|AFK38535.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 187/334 (55%), Positives = 235/334 (70%), Gaps = 3/334 (0%)
Query: 31 RNNSNNNNNNLSMNSGDDE--GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDA 88
++NS N N L +E + + DS++ +R+R +++E+LQSYD L+ +L +A
Sbjct: 42 KDNSVNEKNELDFGEVSEESVATSSAADSVIGERKRLGIYQEILQSYDALKIDSKNLKEA 101
Query: 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS 148
K KILSY PG W E G+ L DYDVP+TT LLL+GP GSGKSSL+NRISKVF+ DKFA
Sbjct: 102 KEKILSYRPGTWTEKAKGLKLCDYDVPETTCLLLVGPSGSGKSSLINRISKVFDEDKFAP 161
Query: 149 ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG 208
RAQV+YNS G+GT FL+EY IPR SNS LYDTRSLSDD+ +N M+K W+ +GVRHG
Sbjct: 162 ARAQVSYNSIRGNGTCFLREYMIPRDSNSICLYDTRSLSDDSHENNKMLKNWMTKGVRHG 221
Query: 209 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQY 267
ELV R D L ++ K K G S RKVN+VI V++GL+VL +E +E+ Y
Sbjct: 222 ELVARGMDDKRLSKNLKLKGDKKGFFSSKSRKVNYVICVLNGLSVLNVIENAGGALEEWY 281
Query: 268 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327
Q + +TFNCP+LSF+DDKPV+V+THGDLLSL+DRAR+R YLGELLGIPP KQIFDIP+
Sbjct: 282 IQQIVSTFNCPFLSFKDDKPVLVLTHGDLLSLSDRARVRAYLGELLGIPPTKQIFDIPDC 341
Query: 328 SDPENELIIVDMLRYCLEHADRNLSCKSCARNKV 361
D E IV MLRY LEHAD N KS NK+
Sbjct: 342 DDLVTESAIVGMLRYTLEHADGNFPQKSNVMNKI 375
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505167|ref|XP_003622872.1| hypothetical protein MTR_7g055730 [Medicago truncatula] gi|355497887|gb|AES79090.1| hypothetical protein MTR_7g055730 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 186/336 (55%), Positives = 242/336 (72%), Gaps = 5/336 (1%)
Query: 31 RNNSNNNNNNLSMNSGDDEGSRDS--WDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDA 88
+++ N N L ++E ++ S +V +R+R ++++E+LQSYD+L+ SL A
Sbjct: 36 KDDRENEKNGLDFGEVNEETAQPSNGVGFVVGERKRLSIYQEILQSYDELKIDSISLKQA 95
Query: 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS 148
K KIL Y PG WIE G+ L DYDVP+TTSL+L+GP GSGKSSL+NRISKVF++DKFA
Sbjct: 96 KEKILRYRPGTWIEKARGLKLRDYDVPETTSLILVGPSGSGKSSLINRISKVFDDDKFAP 155
Query: 149 ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG 208
RAQV+YNS GDGTYFL+E+ IPR SNS LYDTRSLS+ + +N M+K W+ EGV HG
Sbjct: 156 TRAQVSYNSLRGDGTYFLREHMIPRDSNSICLYDTRSLSNKSHENNEMLKNWMTEGVHHG 215
Query: 209 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQY 267
ELVIR D+ +L ++CK +K G S RKVNFVI+V++GL+VL ME D + +Y
Sbjct: 216 ELVIRSKDNQTLTESLKCKGNKKGFFSSKSRKVNFVIYVLNGLSVLNMMENADGAFKARY 275
Query: 268 NQIVATTFNC--PYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325
+ + +TFN P+LSF+DDKPV+V+THGDLLSL+DRAR+R YLGE+LGIPP KQIFDIP
Sbjct: 276 IEEIVSTFNFNNPFLSFKDDKPVLVLTHGDLLSLSDRARVRVYLGEVLGIPPTKQIFDIP 335
Query: 326 ESSDPENELIIVDMLRYCLEHADRNLSCKSCARNKV 361
E D E I+ MLRY LEHAD N+ K+ NKV
Sbjct: 336 ECDDLVTESAIIGMLRYTLEHADNNIPQKTNVMNKV 371
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790788|ref|XP_002863279.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp. lyrata] gi|297309113|gb|EFH39538.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 165/299 (55%), Positives = 214/299 (71%), Gaps = 15/299 (5%)
Query: 56 DSLVDQRRRDAVFREVLQSYD-QLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 114
+ + D RRR+ ++E+LQSYD LR+ L A+N+IL YTPG+W + + LSDYDV
Sbjct: 47 NHVTDLRRREKSYQEILQSYDVLLRSSKRKLRQARNEILRYTPGSWSD----VKLSDYDV 102
Query: 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 174
PKTTS++L+GPKG+GKSSLVN+IS+V E+D+F RAQ ++ + GT+F+QEY IPRG
Sbjct: 103 PKTTSIMLVGPKGAGKSSLVNKISRVIEDDEFFPARAQESFGTQSKGGTFFVQEYMIPRG 162
Query: 175 -SNSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 232
S SF LYDTR LS +SDN MI+ W+ +GV HGE VI SDSS L++R+ + G
Sbjct: 163 GSASFCLYDTRGLSHISSSDNTRMIEQWMTKGVHHGEPVIWTSDSSDLKDRL-IRDGGTG 221
Query: 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 292
E RKVN VIFV++ + +LKSME E Y +++T FNCP LSF+DDKP VV+T
Sbjct: 222 YER---RKVNSVIFVINAVEILKSME----CETSYAHMISTAFNCPLLSFKDDKPAVVMT 274
Query: 293 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNL 351
HGD+LSL DRAR+R +LGELLGIPPAKQIFDIPES D L I ++L Y L+HAD+N
Sbjct: 275 HGDMLSLEDRARVRVFLGELLGIPPAKQIFDIPESRDIATALTICNLLCYSLDHADKNF 333
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42570140|ref|NP_849371.2| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] gi|332657820|gb|AEE83220.1| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 157/299 (52%), Positives = 209/299 (69%), Gaps = 15/299 (5%)
Query: 56 DSLVDQRRRDAVFREVLQSYDQL-RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 114
+ + D RRR+ ++E+LQS+D L RT L A+N+ILSYTPG+W + + LSDY++
Sbjct: 46 NHVTDLRRREKAYQEILQSHDLLLRTSKRKLRQARNEILSYTPGSWSD----VKLSDYNI 101
Query: 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 174
PKTTS++L+GPKG+GKSSLVN+I++V E+D F +RAQ ++ + GTYF+QEY I RG
Sbjct: 102 PKTTSIMLVGPKGAGKSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRG 161
Query: 175 -SNSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 232
S SF LYDTR LS +SDN +MI+ W+ GV HGE VI SDSS L++R+ + G
Sbjct: 162 GSASFCLYDTRGLSRISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLKDRL-IRDGGTG 220
Query: 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 292
E RKVN +IFVV+ + +LKSME E Y ++ T FN P L F+DDKP VV+T
Sbjct: 221 YER---RKVNSIIFVVNAVEILKSME----CETSYASMITTAFNSPILLFKDDKPAVVMT 273
Query: 293 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNL 351
HGD+LS +RAR+R +LGELLGIPP KQIFDIPES D + I ++L Y L+HAD+N
Sbjct: 274 HGDMLSREERARVRVFLGELLGIPPHKQIFDIPESRDTATAITICNLLCYSLQHADKNF 332
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 361 | ||||||
| TAIR|locus:2123236 | 481 | AT4G13030 [Arabidopsis thalian | 0.778 | 0.584 | 0.530 | 1.4e-73 | |
| ZFIN|ZDB-GENE-030131-9145 | 313 | si:dkey-79f11.5 "si:dkey-79f11 | 0.382 | 0.440 | 0.308 | 1.4e-05 |
| TAIR|locus:2123236 AT4G13030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 157/296 (53%), Positives = 208/296 (70%)
Query: 58 LVDQRRRDAVFREVLQSYDQL-RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPK 116
+ D RRR+ ++E+LQS+D L RT L A+N+ILSYTPG+W + + LSDY++PK
Sbjct: 50 VTDLRRREKAYQEILQSHDLLLRTSKRKLRQARNEILSYTPGSWSD----VKLSDYNIPK 105
Query: 117 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG-S 175
TTS++L+GPKG+GKSSLVN+I++V E+D F +RAQ ++ + GTYF+QEY I RG S
Sbjct: 106 TTSIMLVGPKGAGKSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRGGS 165
Query: 176 NSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 234
SF LYDTR LS +SDN +MI+ W+ GV HGE VI SDSS L++R+ + G E
Sbjct: 166 ASFCLYDTRGLSRISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLKDRL-IRDGGTGYE 224
Query: 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 294
RKVN +IFVV+ + +LKSME E Y ++ T FN P L F+DDKP VV+THG
Sbjct: 225 R---RKVNSIIFVVNAVEILKSME----CETSYASMITTAFNSPILLFKDDKPAVVMTHG 277
Query: 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRN 350
D+LS +RAR+R +LGELLGIPP KQIFDIPES D + I ++L Y L+HAD+N
Sbjct: 278 DMLSREERARVRVFLGELLGIPPHKQIFDIPESRDTATAITICNLLCYSLQHADKN 333
|
|
| ZFIN|ZDB-GENE-030131-9145 si:dkey-79f11.5 "si:dkey-79f11.5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 50/162 (30%), Positives = 82/162 (50%)
Query: 100 WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159
W+EN TLSD +V K +L++GP G+GKSS +N I+ VF+ + S +A V NS+
Sbjct: 57 WLEN---FTLSDPNV-KDIKILVVGPSGAGKSSFINSINSVFQ--RRISSKALV--NSAG 108
Query: 160 GDGTYF---LQEYTIPRGSNS--FSLYDTRSLSDD---ASDNINMIKLWIMEGVRHGELV 211
GD F L+ TI G S F +D L + S ++IK + V+ G
Sbjct: 109 GDNHSFTEKLKRLTIKNGKTSLPFVFFDIMGLEAEEFHGSKTEDIIKA-VFGHVKDG--- 164
Query: 212 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAV 253
+ ++ S+ + + H +PS+ + V++++DG V
Sbjct: 165 YKFNEEQSIDYKDQ---HYTS-DPSLSDQCFCVVYIIDGKIV 202
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 361 344 0.00097 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 614 (65 KB)
Total size of DFA: 227 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.13u 0.10s 29.23t Elapsed: 00:00:01
Total cpu time: 29.13u 0.10s 29.23t Elapsed: 00:00:01
Start: Fri May 10 17:06:14 2013 End: Fri May 10 17:06:15 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 361 | |||
| pfam07728 | 135 | pfam07728, AAA_5, AAA domain (dynein-related subfa | 0.004 |
| >gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 119 SLLLIGPKGSGKSSLVNRISKVFENDKF 146
+LL+GP G+GKS L R++ N
Sbjct: 1 GVLLVGPPGTGKSELAERLAAALSNRPV 28
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 361 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.98 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.98 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.98 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.98 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.98 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.98 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.98 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.98 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.98 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.98 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.98 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.98 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.97 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.97 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.97 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.97 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.97 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.97 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.97 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.97 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.97 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.97 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.97 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.97 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.97 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.97 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.97 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.97 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.97 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.97 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.97 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.97 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.97 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.97 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.97 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.97 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.97 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.97 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.97 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.97 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.97 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.97 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.97 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.97 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.97 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.97 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.97 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.96 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.96 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.96 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.96 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.96 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.96 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.96 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.96 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.96 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.96 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.96 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.96 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.96 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.96 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.96 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.96 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.96 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.96 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.96 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.96 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.96 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.96 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.96 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.96 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.96 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.96 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.96 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.95 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.95 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.95 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.95 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.95 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.95 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.95 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.95 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.95 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.95 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.95 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.95 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.95 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.95 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.95 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.95 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.94 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.94 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.94 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.94 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.94 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.93 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.93 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.93 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.93 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.92 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.92 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.92 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.92 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.91 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.91 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.91 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.91 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.91 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.91 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.91 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.91 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.89 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.89 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.87 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.87 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.85 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.85 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.83 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.81 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.8 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.79 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.78 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.78 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.76 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.74 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.72 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.72 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.72 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.71 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.71 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.69 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.67 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.67 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.66 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.66 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.63 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.62 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.61 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.6 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.59 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.56 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.54 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.5 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.48 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.42 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.4 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.37 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.32 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.3 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.3 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.29 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.27 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.26 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.19 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.15 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.1 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.1 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.04 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.02 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.01 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 98.91 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 98.9 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.88 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 98.83 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 98.8 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 98.79 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.79 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 98.77 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.63 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.5 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 98.49 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.46 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.45 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.45 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.41 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.4 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.39 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.34 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.22 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 98.22 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.22 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.17 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.16 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.13 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.13 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.12 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.12 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.09 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.06 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.05 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.05 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.03 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.0 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 97.99 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 97.96 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 97.92 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 97.9 | |
| TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. | 97.9 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 97.89 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 97.89 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 97.89 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 97.89 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 97.86 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 97.85 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.85 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.84 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 97.82 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.8 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.8 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.79 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 97.79 | |
| PRK08472 | 434 | fliI flagellum-specific ATP synthase; Validated | 97.79 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.78 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.78 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 97.77 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 97.75 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.74 | |
| PRK05922 | 434 | type III secretion system ATPase; Validated | 97.73 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.72 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.72 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.72 | |
| PF13476 | 202 | AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V | 97.71 | |
| PRK05688 | 451 | fliI flagellum-specific ATP synthase; Validated | 97.71 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 97.7 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 97.68 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 97.67 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.66 | |
| cd02026 | 273 | PRK Phosphoribulokinase (PRK) is an enzyme involve | 97.65 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 97.6 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.59 | |
| PRK08972 | 444 | fliI flagellum-specific ATP synthase; Validated | 97.57 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 97.56 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.53 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.53 | |
| PLN02318 | 656 | phosphoribulokinase/uridine kinase | 97.52 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.52 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 97.5 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 97.49 | |
| PLN03046 | 460 | D-glycerate 3-kinase; Provisional | 97.49 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 97.49 | |
| PRK00889 | 175 | adenylylsulfate kinase; Provisional | 97.48 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 97.47 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 97.46 | |
| PRK06820 | 440 | type III secretion system ATPase; Validated | 97.45 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=387.68 Aligned_cols=210 Identities=19% Similarity=0.259 Sum_probs=189.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|++. ++ |++||++|.+||+++|+||||||||||+|||++|.. |++|+|+++|.++..
T Consensus 1 ~mi~i~~l~K~fg~~---~V---Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-----~~~G~I~i~g~~~~~- 68 (240)
T COG1126 1 MMIEIKNLSKSFGDK---EV---LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-----PDSGSITVDGEDVGD- 68 (240)
T ss_pred CeEEEEeeeEEeCCe---EE---ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC-----CCCceEEECCEeccc-
Confidence 478999999999873 67 455999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
...+...|..+|+|||++++||+ ++.+|+.++.....+.++++.++++.++|+++||.+
T Consensus 69 -------------~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~------- 128 (240)
T COG1126 69 -------------KKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD------- 128 (240)
T ss_pred -------------hhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh-------
Confidence 11455678899999999999999 999999999877777788899999999999999999
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
.++.||.+||||||||||||||| |||||+||+ |.|+|+||| ..
T Consensus 129 ----------ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F 198 (240)
T COG1126 129 ----------KADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF 198 (240)
T ss_pred ----------hhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH
Confidence 45999999999999999999999 999999875 999999999 78
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhh
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 336 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~ 336 (361)
|...||||+ +|++|++++.|+++++|.+|.++.++.|+..
T Consensus 199 Ar~Vadrvi-Fmd~G~iie~g~p~~~f~~p~~~R~~~FL~~ 238 (240)
T COG1126 199 AREVADRVI-FMDQGKIIEEGPPEEFFDNPKSERTRQFLSK 238 (240)
T ss_pred HHHhhheEE-EeeCCEEEEecCHHHHhcCCCCHHHHHHHHh
Confidence 999999995 7999999999999999999998877777653
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-49 Score=384.60 Aligned_cols=212 Identities=15% Similarity=0.202 Sum_probs=189.6
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++.++++|++++|++ ..+ ++|+||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|+++.
T Consensus 3 ~~~l~i~~v~k~yg~---~~a---v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-----p~~G~I~l~G~~i~- 70 (352)
T COG3842 3 KPALEIRNVSKSFGD---FTA---VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-----PSSGEILLDGEDIT- 70 (352)
T ss_pred CceEEEEeeeeecCC---eeE---EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECC-
Confidence 457999999999984 467 555999999999999999999999999999999999 99999999999987
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
+ +....+.+++|||+..+||+ +|.+||+||+...+...+.+.++++.++++.++|.+
T Consensus 71 --------------~--lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~------ 128 (352)
T COG3842 71 --------------D--VPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG------ 128 (352)
T ss_pred --------------C--CChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh------
Confidence 1 33445679999999999999 999999999994444445668899999999999998
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
+++++|++||||||||||||||| |||.++||. |+|.|+|||
T Consensus 129 -----------~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 129 -----------FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred -----------hhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 67999999999999999999999 999999763 999999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhhHH
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 340 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~~l 340 (361)
.++..++|||+ +|++|+|.+.|+|++++..|.+.+++.|+...+.+
T Consensus 198 eEAl~msDrI~-Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG~~N~l 243 (352)
T COG3842 198 EEALAMSDRIA-VMNDGRIEQVGTPEEIYERPATRFVADFIGESNIF 243 (352)
T ss_pred HHHhhhccceE-EccCCceeecCCHHHHhhCcchHHHHHHhCcceee
Confidence 68999999996 59999999999999999999999988888865554
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=374.79 Aligned_cols=213 Identities=14% Similarity=0.160 Sum_probs=189.8
Q ss_pred ccccccceeeecCc--ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~--~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
||++++++|.|..+ ..+.|+ +||||+|++||++||||.||||||||+|||++|.+ |++|+|.++|.++..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al---~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-----PtsG~v~v~G~di~~ 72 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTAL---DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER-----PTSGSVFVDGQDLTA 72 (339)
T ss_pred CeEEEeeeeeeccCCCCceeee---ccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEEcCEeccc
Confidence 58999999999752 225684 45999999999999999999999999999999999 999999999988762
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
+ ....+...|+.++|+||+++++.. |+++||+|++...+ .++++.++++.++|+.+||.+
T Consensus 73 --------l----~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag-~~k~ei~~RV~elLelVgL~d------ 133 (339)
T COG1135 73 --------L----SEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG-VPKAEIKQRVAELLELVGLSD------ 133 (339)
T ss_pred --------C----ChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC-CCHHHHHHHHHHHHHHcCChh------
Confidence 1 135567788999999999999986 99999999998655 677889999999999999998
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
.+++||.+|||||||||+||||| |||||+||+ |.||++|||
T Consensus 134 -----------k~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm 202 (339)
T COG1135 134 -----------KADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM 202 (339)
T ss_pred -----------hhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH
Confidence 45999999999999999999999 999999986 999999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhh
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 336 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~ 336 (361)
+.+.++|||++ ||++|++++.|+..++|.+|.++.++.++..
T Consensus 203 ~Vvk~ic~rVa-vm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~~ 244 (339)
T COG1135 203 EVVKRICDRVA-VLDQGRLVEEGTVSEVFANPKHAITQEFIGE 244 (339)
T ss_pred HHHHHHhhhhe-EeeCCEEEEeccHHHhhcCcchHHHHHHHHh
Confidence 67889999997 5999999999999999999998877777664
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=361.44 Aligned_cols=210 Identities=19% Similarity=0.257 Sum_probs=189.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
||+++|++|+|++. .+ ++++||+|++||+++++|||||||||++|+|++++. |++|+|+++|+++.
T Consensus 1 MI~~~nvsk~y~~~---~a---v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie-----pt~G~I~i~g~~i~--- 66 (309)
T COG1125 1 MIEFENVSKRYGNK---KA---VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE-----PTSGEILIDGEDIS--- 66 (309)
T ss_pred CceeeeeehhcCCc---ee---eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC-----CCCceEEECCeecc---
Confidence 68999999999863 56 455999999999999999999999999999999999 99999999999987
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
++....+|+.+|||-|...+||+ +|.+||+.-.... +-+++..++++.++|+.+||++..
T Consensus 67 ------------~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~-~w~k~~i~~r~~ELl~lvgL~p~~------ 127 (309)
T COG1125 67 ------------DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL-GWDKERIKKRADELLDLVGLDPSE------ 127 (309)
T ss_pred ------------cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc-CCCHHHHHHHHHHHHHHhCCCHHH------
Confidence 56778899999999999999999 9999999865533 335678889999999999998743
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
+++++|++|||||||||.+|||| |||+++||+ ++|||+||| ++
T Consensus 128 ---------~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidE 198 (309)
T COG1125 128 ---------YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDE 198 (309)
T ss_pred ---------HhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHH
Confidence 68999999999999999999999 999999875 999999999 79
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhh
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 337 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~ 337 (361)
|.+++|||++ |++|++++.++|++++.+|.++++..++..-
T Consensus 199 A~kLadri~v-m~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~ 239 (309)
T COG1125 199 ALKLADRIAV-MDAGEIVQYDTPDEILANPANDFVEDFFGES 239 (309)
T ss_pred HHhhhceEEE-ecCCeEEEeCCHHHHHhCccHHHHHHHhccc
Confidence 9999999974 9999999999999999999988877766543
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=350.43 Aligned_cols=219 Identities=20% Similarity=0.228 Sum_probs=193.4
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.+.++++||++.|+.. +| |++||++|++++++|||||||||||||||+++++.+....+..+|+|.++|+++.
T Consensus 5 ~~~~~~~~l~~yYg~~---~a---L~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~- 77 (253)
T COG1117 5 IPAIEVRDLNLYYGDK---HA---LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIY- 77 (253)
T ss_pred cceeEecceeEEECch---hh---hccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeecc-
Confidence 4578999999999864 67 5559999999999999999999999999999999985544456799999999986
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
...+.+.++|+.+|+|||.|+.||.+|++||++|.+.++..+ ++..+.++..|+.++|.+++.
T Consensus 78 ------------~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVK---- 140 (253)
T COG1117 78 ------------DPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVK---- 140 (253)
T ss_pred ------------CCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhH----
Confidence 124567788999999999999999999999999999877666 788999999999999998763
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 296 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~ 296 (361)
+.+++.+..||||||||+|||||| |||||+||+ ..||++||| ..+
T Consensus 141 ---------DrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQA 211 (253)
T COG1117 141 ---------DRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQA 211 (253)
T ss_pred ---------HHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHH
Confidence 367888999999999999999999 999999875 899999999 588
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
++++|+++ +++.|++++.|+++++|.+|.+..++.++.
T Consensus 212 aRvSD~ta-Ff~~G~LvE~g~T~~iF~~P~~~~TedYis 249 (253)
T COG1117 212 ARVSDYTA-FFYLGELVEFGPTDKIFTNPKHKRTEDYIS 249 (253)
T ss_pred HHHhHhhh-hhcccEEEEEcCHHhhhcCccHHHHHHHhc
Confidence 89999997 599999999999999999999887766553
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=371.91 Aligned_cols=210 Identities=16% Similarity=0.180 Sum_probs=187.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
|..|+++||++.|++.. + |+++||+|++||+++|+||||||||||||+|+||.+ |++|+|+++|++++
T Consensus 1 M~~i~l~~v~K~yg~~~---~---l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-----~~~G~I~i~g~~vt- 68 (338)
T COG3839 1 MAELELKNVRKSFGSFE---V---LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-----PTSGEILIDGRDVT- 68 (338)
T ss_pred CcEEEEeeeEEEcCCce---e---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECC-
Confidence 45799999999998742 5 566999999999999999999999999999999999 99999999999987
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
. +.+..+.+++|||+..++|+ +|++||+|++... +.++++.++++.++++.+++.+
T Consensus 69 --------------~--l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~-~~~k~ei~~rV~eva~~L~l~~------ 125 (338)
T COG3839 69 --------------D--LPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR-GVPKAEIDKRVKEVAKLLGLEH------ 125 (338)
T ss_pred --------------C--CChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC-CCchHHHHHHHHHHHHHcCChh------
Confidence 2 22334678999999999999 9999999999843 4567888999999999999999
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
+++++|.+||||||||||||||| |||.|+||. +.|+|+|||
T Consensus 126 -----------lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq 194 (338)
T COG3839 126 -----------LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ 194 (338)
T ss_pred -----------HHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH
Confidence 67999999999999999999999 999999763 899999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhhH
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 339 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~~ 339 (361)
.+|..++|||+ +|++|+|.+.|+|.+++..|.+.+++.++....|
T Consensus 195 ~EAmtladri~-Vm~~G~i~Q~g~p~ely~~P~n~fVA~FiG~p~m 239 (338)
T COG3839 195 VEAMTLADRIV-VMNDGRIQQVGTPLELYERPANLFVAGFIGSPPM 239 (338)
T ss_pred HHHHhhCCEEE-EEeCCeeeecCChHHHhhCccchhhhhhcCChhh
Confidence 58889999996 5999999999999999999999999888886433
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=336.34 Aligned_cols=177 Identities=16% Similarity=0.193 Sum_probs=156.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+++++++++.|+. .++ |+|+||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+.+.
T Consensus 2 ~~l~i~~v~~~f~~---~~v---l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-----p~~G~V~~~g~~v~-- 68 (248)
T COG1116 2 ALLEIEGVSKSFGG---VEV---LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-----PTSGEVLLDGRPVT-- 68 (248)
T ss_pred ceEEEEeeEEEeCc---eEE---eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCcccC--
Confidence 46899999999987 467 555999999999999999999999999999999999 99999999998764
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.....++||||+..++|. |+.+||.+++.... .++.+.++++.++++.+||.+
T Consensus 69 ------------------~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~-~~~~e~~~~a~~~L~~VgL~~------- 122 (248)
T COG1116 69 ------------------GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG-KSKAEARERAKELLELVGLAG------- 122 (248)
T ss_pred ------------------CCCCCEEEEeccCcccchhhHHhhheehhhccc-cchHhHHHHHHHHHHHcCCcc-------
Confidence 223457889999999999 99999999998543 445666778999999999998
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+.+++|++|||||||||+||||| |||+++||. ++||++||| +
T Consensus 123 ----------~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 123 ----------FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred ----------hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 56999999999999999999999 999999763 899999999 6
Q ss_pred ccccccchhhHhhhhh
Q 018083 295 DLLSLTDRARIRTYLG 310 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G 310 (361)
+|..++|||+ +|.++
T Consensus 193 EAv~LsdRiv-vl~~~ 207 (248)
T COG1116 193 EAVYLADRVV-VLSNR 207 (248)
T ss_pred HHHhhhCEEE-EecCC
Confidence 8999999995 58884
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=339.92 Aligned_cols=212 Identities=17% Similarity=0.188 Sum_probs=187.4
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|++++|+++|++. .+ ++++||+|++||+++|+||||||||||+|+|.|+++ |++|+|+++|.++..
T Consensus 6 ~~~I~vr~v~~~fG~~---~I---ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-----P~~GeI~i~G~~i~~ 74 (263)
T COG1127 6 EPLIEVRGVTKSFGDR---VI---LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-----PDKGEILIDGEDIPQ 74 (263)
T ss_pred cceEEEeeeeeecCCE---EE---ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC-----CCCCeEEEcCcchhc
Confidence 5689999999999874 55 555999999999999999999999999999999999 999999999999862
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .-..+..+..++++||.-.+|.. +|++||+|++.-+...+++..++.+...|+.+||....
T Consensus 75 ls------------~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~---- 138 (263)
T COG1127 75 LS------------EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAA---- 138 (263)
T ss_pred cC------------HHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhh----
Confidence 11 23455678889999999999988 99999999998888888899999999999999999842
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
++.+|++|||||++|++||||| ||||+|||+ |.|++||||
T Consensus 139 ------------~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl 206 (263)
T COG1127 139 ------------ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL 206 (263)
T ss_pred ------------hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh
Confidence 6999999999999999999999 999999986 999999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+.+..+|||++ ++.+|+|+..|+++++... .++++++|+.
T Consensus 207 ~s~~~i~Drv~-~L~~gkv~~~Gt~~el~~s-d~P~v~qf~~ 246 (263)
T COG1127 207 DSLLTIADRVA-VLADGKVIAEGTPEELLAS-DDPWVRQFFN 246 (263)
T ss_pred HHHHhhhceEE-EEeCCEEEEeCCHHHHHhC-CCHHHHHHhc
Confidence 68889999996 5999999999999999885 3456665554
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=343.62 Aligned_cols=216 Identities=17% Similarity=0.191 Sum_probs=187.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc---ccC
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---VGD 161 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~---~i~ 161 (361)
+|+++++++.|+.. .+ ++|||++|+.||.+||+||||||||||+++|+||.. |++|.|.++|+ |..
T Consensus 2 ~i~i~~~~~~~~~~---~a---~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~-----p~~G~I~~~~~~l~D~~ 70 (345)
T COG1118 2 SIRINNVKKRFGAF---GA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-----PDAGRIRLNGRVLFDVS 70 (345)
T ss_pred ceeehhhhhhcccc---cc---cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC-----CCCceEEECCEeccchh
Confidence 47899999999874 66 555999999999999999999999999999999999 99999999998 443
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec-CCChhhhhhhcccccccCCCcceeE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~-~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
. +....+.+|+|||+..+|++ +|.+||+||+...+. .++..++.++.++|+.+.|..
T Consensus 71 ---------------~--~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~---- 129 (345)
T COG1118 71 ---------------N--LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG---- 129 (345)
T ss_pred ---------------c--cchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccc----
Confidence 1 12223568999999999999 999999999976532 235677889999999999998
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH 293 (361)
+.+++|.+||||||||||+|||| |||+.+||. |.|+++|||
T Consensus 130 -------------la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH 196 (345)
T COG1118 130 -------------LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196 (345)
T ss_pred -------------hhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC
Confidence 67999999999999999999999 999999763 899999999
Q ss_pred --CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhhHHHHHHhh
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEH 346 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~ 346 (361)
+++.++|||++ +|++|+|...|+++++++.|..+.+..++...+.+......
T Consensus 197 D~eea~~ladrvv-vl~~G~Ieqvg~p~ev~~~P~s~fV~~f~G~~n~~~~~v~~ 250 (345)
T COG1118 197 DQEEALELADRVV-VLNQGRIEQVGPPDEVYDHPASRFVARFLGEVNVLPGEVIL 250 (345)
T ss_pred CHHHHHhhcceEE-EecCCeeeeeCCHHHHhcCCCccceecccccceeccceeec
Confidence 68899999995 69999999999999999999999888887766655544443
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=332.43 Aligned_cols=214 Identities=14% Similarity=0.138 Sum_probs=175.8
Q ss_pred ccccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 83 GSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+++++++|+++.|+.+. +.++ |++|||+|.+||+++|+||||||||||.++|+|+.+ |++|+|.++|.+..
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~---l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-----p~~G~I~~~G~~~~ 72 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHA---LNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK-----PSSGSILLDGKPLA 72 (252)
T ss_pred CceEEEeceEEEecCCcchhhh---hcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCcccC
Confidence 35799999999998753 2246 555999999999999999999999999999999999 99999999998765
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.. -.....++.+.+||||+. +-|. +|.+-|..++..++ -...++++.++|+.+||.+.
T Consensus 73 ~~--------------~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~---~~~~~~~i~~~L~~VgL~~~-- 133 (252)
T COG1124 73 PK--------------KRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG---LSKSQQRIAELLDQVGLPPS-- 133 (252)
T ss_pred cc--------------ccchhhccceeEEecCCccccCcchhHHHHHhhhhccCC---ccHHHHHHHHHHHHcCCCHH--
Confidence 10 001134556788999985 3344 77777776666422 23445569999999999875
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
+++++|++|||||+||+|||||| |||||+||. +.|+|+||
T Consensus 134 --------------~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~Is 199 (252)
T COG1124 134 --------------FLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFIS 199 (252)
T ss_pred --------------HHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEe
Confidence 57999999999999999999999 999999763 88999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
| ..+..+||||+ ||++|++++.+++++++..|.+++++.++.+..
T Consensus 200 Hdl~~v~~~cdRi~-Vm~~G~ivE~~~~~~l~~~~~h~ytr~Ll~a~~ 246 (252)
T COG1124 200 HDLALVEHMCDRIA-VMDNGQIVEIGPTEELLSHPSHPYTRELLEAVP 246 (252)
T ss_pred CcHHHHHHHhhhee-eeeCCeEEEeechhhhhcCCccHHHHHHHHhhh
Confidence 9 56779999997 599999999999999999999999887766543
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-44 Score=338.06 Aligned_cols=220 Identities=19% Similarity=0.208 Sum_probs=187.6
Q ss_pred ccccccceeeecCcce------------------eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccc
Q 018083 85 LTDAKNKILSYTPGAW------------------IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKF 146 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~------------------~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~ 146 (361)
.|+++|+++-|+.... .-.+-|+.|+||+|++||++.|+|-||||||||+++|++|.+
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie---- 79 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE---- 79 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC----
Confidence 4777888877764310 001223566999999999999999999999999999999999
Q ss_pred ccccceeeecccccCcceEeEeeeecCCCcceeeeecC-CCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhh
Q 018083 147 ASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRM 224 (361)
Q Consensus 147 ~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v 224 (361)
|++|+|+++|.++..-. .-.+.+.| ..+++|||++.++|+ +|.+|+.||+... +.++.+.++++
T Consensus 80 -pt~G~ilv~g~di~~~~------------~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~-Gv~~~er~~~a 145 (386)
T COG4175 80 -PTRGEILVDGKDIAKLS------------AAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ-GVPKAEREERA 145 (386)
T ss_pred -CCCceEEECCcchhcCC------------HHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec-CCCHHHHHHHH
Confidence 99999999999885110 12233443 468999999999999 9999999999854 56788899999
Q ss_pred cccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------
Q 018083 225 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------- 284 (361)
Q Consensus 225 ~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------- 284 (361)
.++++.+||.. +.+++|++|||||||||.||||| |||+|+||+
T Consensus 146 ~~~l~~VgL~~-----------------~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl 208 (386)
T COG4175 146 LEALELVGLEG-----------------YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELL 208 (386)
T ss_pred HHHHHHcCchh-----------------hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHH
Confidence 99999999998 56999999999999999999999 999999876
Q ss_pred ------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhhHH
Q 018083 285 ------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 340 (361)
Q Consensus 285 ------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~~l 340 (361)
++||++||| +++.++.|||++ |++|+|++.|+|++|+.+|.+.|+..|+.-.+..
T Consensus 209 ~Lq~~l~KTIvFitHDLdEAlriG~rIai-mkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~ 271 (386)
T COG4175 209 ELQAKLKKTIVFITHDLDEALRIGDRIAI-MKDGEIVQVGTPEEILLNPANDYVRDFVRNVDRS 271 (386)
T ss_pred HHHHHhCCeEEEEecCHHHHHhccceEEE-ecCCeEEEeCCHHHHHcCccHHHHHHHHhcCChh
Confidence 899999999 799999999986 9999999999999999999999998888755443
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=324.28 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=172.2
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++||++.|+++ .++ |++|||+|++||+++||||||||||||+|+|+|+.+ |++|+|.++|.++...
T Consensus 2 ~~i~~~nl~k~yp~~--~~a---L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-----~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 2 MMIEVKNLSKTYPGG--HQA---LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-----PTSGEILFNGVQITKL 71 (258)
T ss_pred ceEEEeeeeeecCCC--cee---eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC-----CCcceEEecccchhcc
Confidence 479999999999755 366 666999999999999999999999999999999999 9999999999887521
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe-------cCCChhhhhhhcccccccCCCc
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-------RSDSSSLRNRMRCKAHKIGCEP 235 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~-------~~~~~~~~~~v~~~l~~~gl~~ 235 (361)
. +-.+...|..+||+||.+++.+. ++.+||..|...+. +...++.+.++.++|+++|+.+
T Consensus 72 ~------------~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~ 139 (258)
T COG3638 72 K------------GKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD 139 (258)
T ss_pred c------------hHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHH
Confidence 1 23466778899999999999988 99999998876332 1234566788889999999998
Q ss_pred ceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEE
Q 018083 236 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 289 (361)
Q Consensus 236 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvI 289 (361)
.+.++..+|||||||||+||||| |||+++||+ |.|||
T Consensus 140 -----------------~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi 202 (258)
T COG3638 140 -----------------KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVI 202 (258)
T ss_pred -----------------HHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEE
Confidence 45899999999999999999999 999999875 99999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
+.-| +.+.++||||+ -|++|+|+.+|+++++
T Consensus 203 ~nLH~vdlA~~Y~~Rii-gl~~G~ivfDg~~~el 235 (258)
T COG3638 203 VNLHQVDLAKKYADRII-GLKAGRIVFDGPASEL 235 (258)
T ss_pred EEechHHHHHHHHhhhe-EecCCcEEEeCChhhh
Confidence 9999 78899999995 5999999999999764
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=324.69 Aligned_cols=190 Identities=20% Similarity=0.250 Sum_probs=155.5
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+++++|+++.|+.+. .+++ |+++||+|++||+++|+||||||||||+++|.|+.+ |++|.|.++|+++...
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~---L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-----pt~G~v~i~g~d~~~l 72 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEA---LKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-----PTSGEVLINGKDLTKL 72 (226)
T ss_pred CcEEeeeEEEeccCCcceEe---cccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEEcCcC
Confidence 478999999997543 2567 555999999999999999999999999999999999 9999999999887611
Q ss_pred eEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
. .-.... .+..+|+|||+.++++. ++.+||.+++..... .....++++..+++.+|+.+..
T Consensus 73 ~------------~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~-~~~~~~~~~~~l~~~lgl~~~~---- 135 (226)
T COG1136 73 S------------EKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK-SAGRRKRAAEELLEVLGLEDRL---- 135 (226)
T ss_pred C------------HHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC-ChhHHHHHHHHHHHhcCChhhh----
Confidence 0 011112 34568999999999988 999999987654322 2225677888899999998732
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-~ 294 (361)
.+++|.+||||||||||||||| ||||.+||. |+||||||| .
T Consensus 136 ------------~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 136 ------------LKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred ------------ccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 2489999999999999999999 999999763 889999999 5
Q ss_pred ccccccchhhHhhhhhhh
Q 018083 295 DLLSLTDRARIRTYLGEL 312 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~i 312 (361)
.++.+|||++ .+++|++
T Consensus 204 ~lA~~~dr~i-~l~dG~~ 220 (226)
T COG1136 204 ELAKYADRVI-ELKDGKI 220 (226)
T ss_pred HHHHhCCEEE-EEeCCee
Confidence 7889999995 6999983
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=361.71 Aligned_cols=231 Identities=10% Similarity=0.138 Sum_probs=201.3
Q ss_pred hhhhhhhHHHHHHHHhHHHHHhh-------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcc
Q 018083 59 VDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 131 (361)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~-------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKS 131 (361)
..--++.+|+-|+++-+|.++.. ..+.|+++||+|.|+.+...++ |+|+||+|+|||++|||||||||||
T Consensus 432 mkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~V---lk~lsfti~pGe~vALVGPSGsGKS 508 (716)
T KOG0058|consen 432 MKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPV---LKNLSFTIRPGEVVALVGPSGSGKS 508 (716)
T ss_pred HHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchh---hcCceeeeCCCCEEEEECCCCCCHH
Confidence 33445666888998888775433 3457999999999987765677 5559999999999999999999999
Q ss_pred hhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeE
Q 018083 132 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 211 (361)
Q Consensus 132 TLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~ 211 (361)
|++++|.++|+ |++|+|.+||.++. ++....+|+.+++|.|+|.+|..+|.+||.||..
T Consensus 509 TiasLL~rfY~-----PtsG~IllDG~~i~---------------~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~- 567 (716)
T KOG0058|consen 509 TIASLLLRFYD-----PTSGRILLDGVPIS---------------DINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD- 567 (716)
T ss_pred HHHHHHHHhcC-----CCCCeEEECCeehh---------------hcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-
Confidence 99999999999 99999999999997 5777778899999999999999999999999876
Q ss_pred EecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceee
Q 018083 212 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 282 (361)
Q Consensus 212 ~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L 282 (361)
....++++.++++++-++.+...++.|.++|+++. .+||||||||+|||||| ||.||+|
T Consensus 568 ------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG------~qLSGGQKQRIAIARALlr~P~VLILDEATSAL 635 (716)
T KOG0058|consen 568 ------NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG------SQLSGGQKQRIAIARALLRNPRVLILDEATSAL 635 (716)
T ss_pred ------CCCHHHHHHHHHHhChHHHHHhCccccccccCCcc------ccccchHHHHHHHHHHHhcCCCEEEEechhhhc
Confidence 44567788889999988888888999999999864 48999999999999999 9999997
Q ss_pred cC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 283 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 283 ~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|. ++|||+|.| -...+.||+|+ |+++|++++.|++++++..+.
T Consensus 636 DaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Iv-vi~~G~V~E~G~h~eLl~~~~ 694 (716)
T KOG0058|consen 636 DAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIV-VIDKGRVVEMGTHDELLSKPN 694 (716)
T ss_pred chhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEE-EEcCCeEEecccHHHHhhCcc
Confidence 63 899999999 55667799995 699999999999999998875
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=332.01 Aligned_cols=226 Identities=17% Similarity=0.211 Sum_probs=183.1
Q ss_pred ccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+|+++||+.+|... ..+.|++| |||+|++||++||||+|||||||+.++|+|+++.......+|+|.|+|+++...
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~---vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDG---VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred CceEeeeEEEEecCCccEEEEec---eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 47899999999653 24678666 999999999999999999999999999999997321125789999999986511
Q ss_pred eEeEeeeecCCCcceeeeecC-CCCcccccchHHH--HH-HHHhccccceeEEecC-CChhhhhhhcccccccCCCccee
Q 018083 164 YFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMI--KL-WIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~~l~--~~-ti~~ni~~~~~~~~~~-~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
. .-.....| +.++++||++... |. +|.+.+...+..+... .+++.++++.++|+.+++.+.
T Consensus 78 ~------------~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~-- 143 (316)
T COG0444 78 S------------EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP-- 143 (316)
T ss_pred C------------HHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--
Confidence 1 00111233 3588999998643 33 7888887776655444 356678899999999999862
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
.+++++||++|||||||||+||.|| ||||++||- |+++|+||
T Consensus 144 ------------~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilIT 211 (316)
T COG0444 144 ------------ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILIT 211 (316)
T ss_pred ------------HHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 2367999999999999999999999 999999752 99999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhhHH
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 340 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~~l 340 (361)
| ..++++||||+ ||+.|+|++.|+++++|.+|.|+||+.++..+-.+
T Consensus 212 HDl~vva~~aDri~-VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s~P~~ 260 (316)
T COG0444 212 HDLGVVAEIADRVA-VMYAGRIVEEGPVEEIFKNPKHPYTRGLLNSLPRL 260 (316)
T ss_pred CCHHHHHHhcceEE-EEECcEEEEeCCHHHHhcCCCChHHHHHHHhCccc
Confidence 9 47889999997 59999999999999999999999999998877665
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=306.64 Aligned_cols=192 Identities=18% Similarity=0.200 Sum_probs=165.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
||+++||++.|+.+ .+|| +||||+|++||++-|+||||||||||+|+|++..+ |++|+|+++|.++..
T Consensus 1 mI~f~~V~k~Y~~g--~~aL---~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-----pt~G~i~~~~~dl~~-- 68 (223)
T COG2884 1 MIRFENVSKAYPGG--REAL---RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-----PTRGKILVNGHDLSR-- 68 (223)
T ss_pred CeeehhhhhhcCCC--chhh---hCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc-----CCCceEEECCeeccc--
Confidence 58999999999887 3684 55999999999999999999999999999999999 999999999999862
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.... .+.-+|+.+|+|||+..+.+. ++++||++++...+ ..+.+.++++.++|+.+||.++
T Consensus 69 -l~~~---------~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G-~~~~~i~~rV~~~L~~VgL~~k------- 130 (223)
T COG2884 69 -LKGR---------EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG-KPPREIRRRVSEVLDLVGLKHK------- 130 (223)
T ss_pred -cccc---------ccchhhheeeeEeeeccccccchHhhhhhhhhhccC-CCHHHHHHHHHHHHHHhccchh-------
Confidence 1111 222367889999999999888 99999999988653 4567889999999999999994
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
++..|.+||||||||++||||+ ||||.+||+ |+||||.|| ..+
T Consensus 131 ----------~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv 200 (223)
T COG2884 131 ----------ARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200 (223)
T ss_pred ----------hhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH
Confidence 4899999999999999999999 999999875 999999999 455
Q ss_pred ccccchhhHhhhhhhhcCCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~ 317 (361)
.++--|++ .+++|+++....
T Consensus 201 ~~~~~rvl-~l~~Grl~~d~~ 220 (223)
T COG2884 201 NRMRHRVL-ALEDGRLVRDES 220 (223)
T ss_pred HhccCcEE-EEeCCEEEeccc
Confidence 57677885 599999987643
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=325.31 Aligned_cols=197 Identities=15% Similarity=0.152 Sum_probs=168.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+++++||++.|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |.+|+|.++|+++.
T Consensus 2 ~L~~~~ls~~y~~~---~i---l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-----p~~G~V~l~g~~i~--- 67 (258)
T COG1120 2 MLEVENLSFGYGGK---PI---LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-----PKSGEVLLDGKDIA--- 67 (258)
T ss_pred eeEEEEEEEEECCe---eE---EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCCchh---
Confidence 68999999999853 45 666999999999999999999999999999999999 99999999999987
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHH-HHHHHhccccceeEEe---cCCChhhhhhhcccccccCCCcceeEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMI-KLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~-~~ti~~ni~~~~~~~~---~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.+...+..+.++||+|.+... ..+|.+-|.+|...+. ....++.++.+.++|+.+++.+
T Consensus 68 ------------~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~----- 130 (258)
T COG1120 68 ------------SLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEH----- 130 (258)
T ss_pred ------------hcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHH-----
Confidence 455566677889999986543 4488888888754321 1224555667889999999998
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++...+||||||||+.||||| ||||+.||- |+|||+++|
T Consensus 131 ------------la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHD 198 (258)
T COG1120 131 ------------LADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHD 198 (258)
T ss_pred ------------HhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 66999999999999999999999 999999752 899999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.++++||+++ +|++|++++.|+|+++++..
T Consensus 199 lN~A~ryad~~i-~lk~G~i~a~G~p~evlT~e 230 (258)
T COG1120 199 LNLAARYADHLI-LLKDGKIVAQGTPEEVLTEE 230 (258)
T ss_pred HHHHHHhCCEEE-EEECCeEEeecCcchhcCHH
Confidence 68999999995 59999999999999888754
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=363.40 Aligned_cols=232 Identities=12% Similarity=0.152 Sum_probs=199.9
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccC
Q 018083 55 WDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 126 (361)
Q Consensus 55 ~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpn 126 (361)
|...+.-+....|+.++++.++|.... ..+.++++|++|+|+...+ .+ |+|+||+|++||++||+|+|
T Consensus 433 ~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~-~v---L~~isL~I~~Ge~vaIvG~S 508 (709)
T COG2274 433 WTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDP-PV---LEDLSLEIPPGEKVAIVGRS 508 (709)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCc-ch---hhceeEEeCCCCEEEEECCC
Confidence 444455566677999999988773322 2235999999999987643 45 66699999999999999999
Q ss_pred CCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccc
Q 018083 127 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 206 (361)
Q Consensus 127 GSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~ 206 (361)
|||||||+|+|.|+++ |++|+|.+||.|+. .+.....|+.+++|+|++.+|..++.||++
T Consensus 509 GsGKSTL~KLL~gly~-----p~~G~I~~dg~dl~---------------~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~ 568 (709)
T COG2274 509 GSGKSTLLKLLLGLYK-----PQQGRILLDGVDLN---------------DIDLASLRRQVGYVLQDPFLFSGSIRENIA 568 (709)
T ss_pred CCCHHHHHHHHhcCCC-----CCCceEEECCEeHH---------------hcCHHHHHhheeEEcccchhhcCcHHHHHh
Confidence 9999999999999999 99999999999987 578888999999999999999999999999
Q ss_pred cceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CC
Q 018083 207 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 277 (361)
Q Consensus 207 ~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 277 (361)
++.+ ....+++.++++..|.++.+...++.|.+.|.+ ....||||||||++||||| ||
T Consensus 569 l~~p-------~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E------~G~~LSGGQrQrlalARaLl~~P~ILlLDE 635 (709)
T COG2274 569 LGNP-------EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE------GGANLSGGQRQRLALARALLSKPKILLLDE 635 (709)
T ss_pred cCCC-------CCCHHHHHHHHHHhCcHHHHHhccccccccccc------CCCCCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 7655 334578888999999999888888888886655 4668999999999999999 99
Q ss_pred CceeecC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 278 PYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 278 Pt~~L~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|||+||. |+|+|+||| ....+.||||+ ||++|+|+++|++++++..
T Consensus 636 aTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIi-Vl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 636 ATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRII-VLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred cccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEE-EccCCceeccCCHHHHHHh
Confidence 9999874 899999999 67778999995 6999999999999999876
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=303.11 Aligned_cols=193 Identities=17% Similarity=0.220 Sum_probs=167.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
++.++++.++|+... -..+++|++||++||+||||||||||+|+|+|+.. |.+|.|+++|++.+.
T Consensus 1 ~l~L~~V~~~y~~~~--------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-----P~~G~i~i~g~d~t~-- 65 (231)
T COG3840 1 MLALDDVRFSYGHLP--------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-----PASGEILINGVDHTA-- 65 (231)
T ss_pred CccccceEEeeCcce--------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-----CCCceEEEcCeecCc--
Confidence 467899999997532 12888999999999999999999999999999999 999999999999862
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
..+..+-++++||+.++|.+ +|..||.+|+.-.-.. ..+.+++++.++.++|+..
T Consensus 66 ---------------~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL-~a~~r~~v~~aa~~vGl~~-------- 121 (231)
T COG3840 66 ---------------SPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL-NAEQREKVEAAAAQVGLAG-------- 121 (231)
T ss_pred ---------------CCcccCChhhhhhccccchhhhhhhhhcccCCccccc-CHHHHHHHHHHHHHhChhh--------
Confidence 11234457889999999999 9999999987532222 2566788999999999999
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
++++.|.+||||||||+|+||+| |||+++|++ +.|++|||| ++
T Consensus 122 ---------~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D 192 (231)
T COG3840 122 ---------FLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED 192 (231)
T ss_pred ---------HhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 66999999999999999999999 999999865 899999999 89
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
+.+++||++ ++++|+|...|++++++....
T Consensus 193 a~~ia~~~~-fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 193 AARIADRVV-FLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred HHHhhhceE-EEeCCEEEeeccHHHHhccCC
Confidence 999999995 699999999999999887654
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=340.59 Aligned_cols=205 Identities=16% Similarity=0.181 Sum_probs=173.3
Q ss_pred cccccccceeee-cCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSY-TPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y-~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++|+++|++++| ++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 2 ~~l~i~~l~~~~~~~~---~~---l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~- 69 (356)
T PRK11650 2 AGLKLQAVRKSYDGKT---QV---IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-----ITSGEIWIGGRVVN- 69 (356)
T ss_pred CEEEEEeEEEEeCCCC---EE---EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECC-
Confidence 468999999999 442 45 666999999999999999999999999999999999 99999999998875
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
... ..++.++||||++.+|+. ++.+|+.++.... ..++.+.++++.++++.++|.+
T Consensus 70 --------------~~~--~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------ 126 (356)
T PRK11650 70 --------------ELE--PADRDIAMVFQNYALYPHMSVRENMAYGLKIR-GMPKAEIEERVAEAARILELEP------ 126 (356)
T ss_pred --------------CCC--HHHCCEEEEeCCccccCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChh------
Confidence 111 123568999999999987 9999999886522 2334455678889999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
+++++|.+||||||||++||||| |||+++||. +.|+|+|||
T Consensus 127 -----------~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 195 (356)
T PRK11650 127 -----------LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ 195 (356)
T ss_pred -----------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 56999999999999999999999 999999753 799999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+++..+||+++ +|++|++++.|++++++..|.+.++..++.
T Consensus 196 ~ea~~l~D~i~-vl~~G~i~~~g~~~~~~~~p~~~~~~~~~g 236 (356)
T PRK11650 196 VEAMTLADRVV-VMNGGVAEQIGTPVEVYEKPASTFVASFIG 236 (356)
T ss_pred HHHHHhCCEEE-EEeCCEEEEECCHHHHHhCCccHHHHHHcC
Confidence 57889999996 599999999999999999887665544443
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=337.85 Aligned_cols=212 Identities=14% Similarity=0.157 Sum_probs=174.1
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
||+++|++++|+.+. ..++ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 mI~~~~lsk~y~~~~~~~~~---L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-----p~~G~I~i~G~~i~~~ 72 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTSGSVIVDGQDLTTL 72 (343)
T ss_pred CEEEEEEEEEECCCCcceEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcC
Confidence 589999999996321 1356 666999999999999999999999999999999999 9999999999887510
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. ...+...++.++|+||++.+++. ++.+|+.++.... ..++.+.++++.++++.+||.+
T Consensus 73 ~------------~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~v~e~l~~vgL~~------- 132 (343)
T TIGR02314 73 S------------NSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEIKRKVTELLALVGLGD------- 132 (343)
T ss_pred C------------HHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 0 01112245678999999988876 9999999876422 2334556778889999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+++++|.+||||||||++||||| ||||++||+ |.|||+||| +
T Consensus 133 ----------~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 133 ----------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45999999999999999999999 999999753 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
.+.++||+++ +|++|++++.|++++++..|.++.++.++.
T Consensus 203 ~v~~~~d~v~-vl~~G~iv~~g~~~~v~~~p~~~~~~~~~~ 242 (343)
T TIGR02314 203 VVKRICDCVA-VISNGELIEQGTVSEIFSHPKTPLAQKFIR 242 (343)
T ss_pred HHHHhCCEEE-EEECCEEEEEcCHHHHHcCCCcHHHHHHHh
Confidence 6779999996 599999999999999998887665555443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=302.63 Aligned_cols=223 Identities=17% Similarity=0.169 Sum_probs=185.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.++.|+++|++++|+.. ++|+| ||++-++|+.+.|||.||||||||++||+=+.. |+.|+|.++|+.+.
T Consensus 3 ~~~~l~v~dlHK~~G~~---eVLKG---vSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-----P~~G~I~v~geei~ 71 (256)
T COG4598 3 AENALEVEDLHKRYGEH---EVLKG---VSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSAGSIRVNGEEIR 71 (256)
T ss_pred cccceehhHHHhhcccc---hhhcc---eeeecCCCCEEEEecCCCCchhHHHHHHHhhcC-----CCCceEEECCeEEE
Confidence 34579999999999874 67555 999999999999999999999999999999999 99999999999875
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
...-......+ .....++..|+..++|||++++.+. ++.+|+.....-..+.++.+..++++.+|.++|+.++.
T Consensus 72 ~k~~~~G~l~~--ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~--- 146 (256)
T COG4598 72 LKRDKDGQLKP--ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKA--- 146 (256)
T ss_pred eeeCCCCCeee--CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhh---
Confidence 21100000000 0112344567778999999999999 99999987654334556778889999999999999844
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
+.||..|||||+||++||||| |||||+||+ |+|++++||
T Consensus 147 --------------~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM 212 (256)
T COG4598 147 --------------DAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM 212 (256)
T ss_pred --------------hcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 899999999999999999999 999999875 999999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
..+...+..++ ++++|.|-+.|+|+++|.+|..+..+.|+.
T Consensus 213 ~FAR~Vss~v~-fLh~G~iEE~G~P~qvf~nP~S~RlkqFls 253 (256)
T COG4598 213 GFARDVSSHVI-FLHQGKIEEEGPPEQVFGNPQSPRLKQFLS 253 (256)
T ss_pred hHHHhhhhheE-EeecceecccCChHHHhcCCCCHHHHHHHH
Confidence 68889999994 799999999999999999998876666554
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=337.71 Aligned_cols=206 Identities=14% Similarity=0.142 Sum_probs=175.6
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 2 ~~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~- 69 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAF---TA---LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-----QTAGTIYQGGRDIT- 69 (353)
T ss_pred CcEEEEEEEEEEeCCe---EE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECC-
Confidence 4579999999999753 45 666999999999999999999999999999999999 99999999998774
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
... ..++.++||||++.+|+. ++.+|+.++.... ..++.+.++++.++++.++|.+
T Consensus 70 --------------~~~--~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~l~L~~------ 126 (353)
T TIGR03265 70 --------------RLP--PQKRDYGIVFQSYALFPNLTVADNIAYGLKNR-GMGRAEVAERVAELLDLVGLPG------ 126 (353)
T ss_pred --------------CCC--HHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCc------
Confidence 111 124568999999999987 9999999986522 2334556778999999999988
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
++++++.+||||||||++||||| |||+++||. +.|+|+|||
T Consensus 127 -----------~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~ 195 (353)
T TIGR03265 127 -----------SERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195 (353)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 56999999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+++..+|||++ +|++|++++.|++++++..|.+.++..++.
T Consensus 196 ~ea~~l~d~i~-vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 236 (353)
T TIGR03265 196 EEALSMADRIV-VMNHGVIEQVGTPQEIYRHPATPFVADFVG 236 (353)
T ss_pred HHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCCHHHHHhcC
Confidence 57889999996 599999999999999999887666554444
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=337.55 Aligned_cols=207 Identities=13% Similarity=0.137 Sum_probs=177.1
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 3 ~~~~l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~ 71 (351)
T PRK11432 3 QKNFVVLKNITKRFGSN---TV---IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-----PTEGQIFIDGEDVT 71 (351)
T ss_pred CCcEEEEEeEEEEECCe---EE---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECC
Confidence 35689999999999752 46 566999999999999999999999999999999999 99999999998875
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. .. ..++.++||||++.+|+. ++.+|+.+++... ..++.+.++++.++++.+++.+
T Consensus 72 ~---------------~~--~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~~gl~~----- 128 (351)
T PRK11432 72 H---------------RS--IQQRDICMVFQSYALFPHMSLGENVGYGLKML-GVPKEERKQRVKEALELVDLAG----- 128 (351)
T ss_pred C---------------CC--HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 1 11 224568999999999987 9999999986532 2334566778899999999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| |||+++||. ++|+|+|||
T Consensus 129 ------------~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 196 (351)
T PRK11432 129 ------------FEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD 196 (351)
T ss_pred ------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 56999999999999999999999 999999753 799999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+++..+||||+ +|++|++++.|++++++..|.+.++..++.
T Consensus 197 ~~e~~~laD~i~-vm~~G~i~~~g~~~~~~~~p~~~~~a~~~g 238 (351)
T PRK11432 197 QSEAFAVSDTVI-VMNKGKIMQIGSPQELYRQPASRFMASFMG 238 (351)
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCchHHHHhcC
Confidence 57889999996 599999999999999999998776666555
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=317.46 Aligned_cols=199 Identities=20% Similarity=0.255 Sum_probs=174.5
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+++++++++++|+++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|.|.++|.++..
T Consensus 2 ~~i~~~~l~~~y~~~--~~~---l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-----p~~G~v~~~g~~~~~- 70 (235)
T COG1122 2 RMIEAENLSFRYPGR--KAA---LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-----PTSGEVLVDGLDTSS- 70 (235)
T ss_pred ceEEEEEEEEEcCCC--cee---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-----CCCCEEEECCeeccc-
Confidence 478999999999876 356 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......++.+++|||+|. +|..+|.+.++|+....+ .+.++.++++.++++.+++.+
T Consensus 71 -------------~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g-~~~~e~~~rv~~~l~~vgl~~------ 130 (235)
T COG1122 71 -------------EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG-LPREEIEERVAEALELVGLEE------ 130 (235)
T ss_pred -------------hhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC-CCHHHHHHHHHHHHHHcCchh------
Confidence 1345567888999999995 566699999999998543 455678899999999999998
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
++++.|++||||||||+|||.+| ||||++||+ |+|+|++||
T Consensus 131 -----------~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~ 199 (235)
T COG1122 131 -----------LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL 199 (235)
T ss_pred -----------hccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH
Confidence 56999999999999999999998 999999864 689999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+..+|||++ +|++|+++.+|++++++..+
T Consensus 200 ~~~~~~ad~v~-vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 200 ELVLEYADRVV-VLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHhhCCEEE-EEECCEEeecCCHHHHhhhh
Confidence 68889999996 69999999999999888765
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=338.00 Aligned_cols=208 Identities=14% Similarity=0.174 Sum_probs=176.7
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 11 ~~~~L~l~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~ 79 (375)
T PRK09452 11 LSPLVELRGISKSFDGK---EV---ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET-----PDSGRIMLDGQDIT 79 (375)
T ss_pred CCceEEEEEEEEEECCe---EE---EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence 55679999999999753 45 666999999999999999999999999999999999 99999999998774
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
... ..++.++||||++.+|+. ++.+||.+++... ..+..+.++++.++++.++|.+
T Consensus 80 ---------------~~~--~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~~~~~l~~~~l~~----- 136 (375)
T PRK09452 80 ---------------HVP--AENRHVNTVFQSYALFPHMTVFENVAFGLRMQ-KTPAAEITPRVMEALRMVQLEE----- 136 (375)
T ss_pred ---------------CCC--HHHCCEEEEecCcccCCCCCHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 111 123568999999999988 9999999986522 2233455677888999999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
+++++|.+||||||||++||||| |||+++||. +.|+|+|||
T Consensus 137 ------------~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd 204 (375)
T PRK09452 137 ------------FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD 204 (375)
T ss_pred ------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 56999999999999999999999 999999753 799999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhh
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 336 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~ 336 (361)
.++..+||||+ +|++|++++.|++++++..|.+.+++.++..
T Consensus 205 ~~ea~~laDri~-vl~~G~i~~~g~~~~i~~~p~~~~~a~~~g~ 247 (375)
T PRK09452 205 QEEALTMSDRIV-VMRDGRIEQDGTPREIYEEPKNLFVARFIGE 247 (375)
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCcccHHHHHhcCc
Confidence 57889999996 5999999999999999999987776666553
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=341.37 Aligned_cols=219 Identities=16% Similarity=0.207 Sum_probs=183.0
Q ss_pred hccccccccceeeecCc--------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee
Q 018083 82 IGSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 153 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~--------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I 153 (361)
..++++++||+++|... ..+.|+++ |||+|.+||++||||+||||||||.|+|+|+++ |++|.|
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~---VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-----P~~G~i 348 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDD---VSFDLREGETLGLVGESGSGKSTLARILAGLLP-----PSSGSI 348 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeee---eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceE
Confidence 45789999999999742 12567555 999999999999999999999999999999999 999999
Q ss_pred eecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccc
Q 018083 154 TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 230 (361)
Q Consensus 154 ~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~ 230 (361)
.++|.+.... .-.....+..+.+||||+. |.|. +|.+.+..++..+......+.++++.++++.
T Consensus 349 ~~~g~~~~~~-------------~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~ 415 (539)
T COG1123 349 IFDGQDLDLT-------------GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLEL 415 (539)
T ss_pred EEeCcccccc-------------cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHH
Confidence 9999883210 1123345667788999986 4454 8999998888765544445666789999999
Q ss_pred cCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------
Q 018083 231 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------- 284 (361)
Q Consensus 231 ~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------- 284 (361)
++|.+. +++++|++||||||||+|||||| |||+|+||.
T Consensus 416 VgL~~~----------------~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~ 479 (539)
T COG1123 416 VGLPPE----------------FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL 479 (539)
T ss_pred cCCCHH----------------HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh
Confidence 999864 47999999999999999999999 999999864
Q ss_pred CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 285 DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 285 g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
|.|.|+||| ..+..+||||+ ||+.|+|++.|+.+++|..|.++|++.++.+..
T Consensus 480 g~t~lfISHDl~vV~~i~drv~-vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~avp 534 (539)
T COG1123 480 GLTYLFISHDLAVVRYIADRVA-VMYDGRIVEEGPTEKVFENPQHPYTRKLLAAVP 534 (539)
T ss_pred CCEEEEEeCCHHHHHhhCceEE-EEECCeEEEeCCHHHHhcCCCChHHHHHHHhcc
Confidence 999999999 57789999996 599999999999999999999999987776543
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=330.97 Aligned_cols=205 Identities=13% Similarity=0.208 Sum_probs=173.2
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 2 ~L~i~~l~~~~~~~---~~---l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~-- 68 (353)
T PRK10851 2 SIEIANIKKSFGRT---QV---LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-----QTSGHIRFHGTDVSR-- 68 (353)
T ss_pred EEEEEEEEEEeCCe---EE---EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC--
Confidence 48899999999753 45 666999999999999999999999999999999999 999999999988741
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEE---ecCCChhhhhhhcccccccCCCcceeEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~---~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. ...++.++|+||++.+++. ++.+|+.++.... ...+..+.++++.++++.++|.+
T Consensus 69 -------------~--~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----- 128 (353)
T PRK10851 69 -------------L--HARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH----- 128 (353)
T ss_pred -------------C--CHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-----
Confidence 1 1123568999999999987 9999999876532 12233455678889999999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| |||+++||. ++|+|+|||
T Consensus 129 ------------~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd 196 (353)
T PRK10851 129 ------------LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD 196 (353)
T ss_pred ------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 56999999999999999999999 999999753 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+++..+||||+ +|++|++++.|++++++..|.+.++..++.
T Consensus 197 ~~ea~~~~Dri~-vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g 238 (353)
T PRK10851 197 QEEAMEVADRVV-VMSQGNIEQAGTPDQVWREPATRFVLEFMG 238 (353)
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence 57889999996 599999999999999999887766655554
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=310.40 Aligned_cols=196 Identities=18% Similarity=0.251 Sum_probs=162.6
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++|++++|+.. ++ |+||||+|++|++++|+||||||||||+|+|+|+++ |.+|+|.++|++...
T Consensus 2 ~~~i~v~nl~v~y~~~---~v---l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-----p~~G~i~~~g~~~~~ 70 (254)
T COG1121 2 MPMIEVENLTVSYGNR---PV---LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-----PSSGEIKIFGKPVRK 70 (254)
T ss_pred CcEEEEeeeEEEECCE---ee---eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCcceEEEccccccc
Confidence 4679999999999864 35 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH---HHHHHHHhccccceeEEe---cCCChhhhhhhcccccccCCCcc
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN---MIKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~---l~~~ti~~ni~~~~~~~~---~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
...+..++||||... -||.+|.+-+..+..... ....+..++.+.++|+.+||.+
T Consensus 71 ------------------~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~- 131 (254)
T COG1121 71 ------------------RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED- 131 (254)
T ss_pred ------------------cccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchh-
Confidence 112356899999652 356688888888743221 1122445789999999999998
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 291 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIii 291 (361)
+.++...+|||||+|||.||||| |||++++|. |+|||||
T Consensus 132 ----------------~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~v 195 (254)
T COG1121 132 ----------------LRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMV 195 (254)
T ss_pred ----------------hhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 66999999999999999999999 999999642 9999999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|| ..+..+||+| + +=+++++..|+++++++.+.
T Consensus 196 tHDL~~v~~~~D~v-i-~Ln~~~~~~G~~~~~~~~~~ 230 (254)
T COG1121 196 THDLGLVMAYFDRV-I-CLNRHLIASGPPEEVLTEEN 230 (254)
T ss_pred eCCcHHhHhhCCEE-E-EEcCeeEeccChhhccCHHH
Confidence 99 5788999999 4 55779999999999988653
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=327.40 Aligned_cols=220 Identities=13% Similarity=0.148 Sum_probs=175.8
Q ss_pred hccccccccceeeecCc----------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc
Q 018083 82 IGSLTDAKNKILSYTPG----------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 151 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~----------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G 151 (361)
.+++|+++||+++|+.+ ....+ ++++||+|++||+++|+|+||||||||+++|+|+++ |++|
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-----p~~G 76 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKA---VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-----ATDG 76 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEE---EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCCc
Confidence 45789999999999631 12356 555999999999999999999999999999999999 9999
Q ss_pred eeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccch--HHHHH-HHHhccccceeEEe-cCCChhhhhhhccc
Q 018083 152 QVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKL-WIMEGVRHGELVIR-RSDSSSLRNRMRCK 227 (361)
Q Consensus 152 ~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~-ti~~ni~~~~~~~~-~~~~~~~~~~v~~~ 227 (361)
+|.++|+++.... ...+...++.++||+|++ .+++. ++.+|+.+++..+. ..++.+.++++.++
T Consensus 77 ~I~~~G~~i~~~~------------~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~ 144 (331)
T PRK15079 77 EVAWLGKDLLGMK------------DDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAM 144 (331)
T ss_pred EEEECCEECCcCC------------HHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 9999998875100 001223456789999997 35554 89999887653221 23345566778889
Q ss_pred ccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--------------
Q 018083 228 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------- 284 (361)
Q Consensus 228 l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------- 284 (361)
++.+++.+. +++++|++|||||+||++||||| ||||++||.
T Consensus 145 l~~vgl~~~----------------~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~ 208 (331)
T PRK15079 145 MLKVGLLPN----------------LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208 (331)
T ss_pred HHHcCCChH----------------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 999999542 46899999999999999999999 999999752
Q ss_pred ---CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 285 ---DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 285 ---g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
+.|+|+||| ..+..+||||+ +|++|++++.|++++++..|.+++++.++..+.
T Consensus 209 ~~~~~til~iTHdl~~~~~~~dri~-vl~~G~ive~g~~~~i~~~~~~py~~~l~~~~~ 266 (331)
T PRK15079 209 REMGLSLIFIAHDLAVVKHISDRVL-VMYLGHAVELGTYDEVYHNPLHPYTKALMSAVP 266 (331)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEE-EEECCEEEEEcCHHHHHcCCCCHHHHHHHhhCC
Confidence 789999999 56778999996 599999999999999999998888776665443
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=331.40 Aligned_cols=207 Identities=13% Similarity=0.162 Sum_probs=176.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+.+ |++|+|.++|+++.
T Consensus 16 ~~~~l~l~~v~~~~~~~---~~---l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~ 84 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQ---HA---VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-----PTAGQIMLDGVDLS 84 (377)
T ss_pred CCceEEEEeEEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence 35579999999999752 45 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
... ..++.++||||++.+|+. ++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 85 ---------------~~~--~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~l~L~~----- 141 (377)
T PRK11607 85 ---------------HVP--PYQRPINMMFQSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVNEMLGLVHMQE----- 141 (377)
T ss_pred ---------------CCC--HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 111 234568999999999988 9999999876522 2234556678889999999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| |||+++||. +.|+|++||
T Consensus 142 ------------~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 209 (377)
T PRK11607 142 ------------FAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD 209 (377)
T ss_pred ------------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 56999999999999999999999 999999753 899999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
.++..+|||++ +|++|++++.|++++++..|.+.+++.++.
T Consensus 210 ~~ea~~laDri~-vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 251 (377)
T PRK11607 210 QEEAMTMAGRIA-IMNRGKFVQIGEPEEIYEHPTTRYSAEFIG 251 (377)
T ss_pred HHHHHHhCCEEE-EEeCCEEEEEcCHHHHHhCCccHHHHHhcC
Confidence 57789999996 599999999999999999988766555554
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=325.07 Aligned_cols=224 Identities=13% Similarity=0.104 Sum_probs=169.6
Q ss_pred cccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++|+++||++.|+... ..++ |+||||+|++||+++|+||||||||||+++|+|+++.. ..|++|+|.++|+++..
T Consensus 2 ~~L~v~~l~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 2 ALLNVDKLSVHFGDESAPFRA---VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQDLQR 77 (326)
T ss_pred ceEEEeCeEEEECCCCccEEE---EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCCcceEEEECCEECCc
Confidence 4789999999997532 1357 55599999999999999999999999999999999721 01489999999988741
Q ss_pred ceEeEeeeecCCCcceeeeec-CCCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 163 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.. ...+... +..+++|||++. +.+. ++.+++...+..+......+.++++.++++.++|.+.
T Consensus 78 ~~------------~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~-- 143 (326)
T PRK11022 78 IS------------EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP-- 143 (326)
T ss_pred CC------------HHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--
Confidence 00 0011111 235788999874 3333 5555554443322222334556788899999999751
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
..++++++++||||||||++||||| ||||++||. |.|+|+||
T Consensus 144 ------------~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iT 211 (326)
T PRK11022 144 ------------ASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLIT 211 (326)
T ss_pred ------------HHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 1146899999999999999999999 999999753 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
| ..+..+||||+ +|++|+|++.|++++++..|.+++++.++..+.
T Consensus 212 Hdl~~~~~~adri~-vm~~G~ive~g~~~~~~~~p~hpyt~~ll~~~~ 258 (326)
T PRK11022 212 HDLALVAEAAHKII-VMYAGQVVETGKAHDIFRAPRHPYTQALLRALP 258 (326)
T ss_pred CCHHHHHHhCCEEE-EEECCEEEEECCHHHHhhCCCChHHHHHHHhCc
Confidence 9 46678999996 599999999999999999999999877765443
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=324.87 Aligned_cols=219 Identities=14% Similarity=0.138 Sum_probs=173.4
Q ss_pred ccccccccceeeecCc-------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 83 GSLTDAKNKILSYTPG-------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~-------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
+++|+++||++.|+.. ....+ |++|||+|++||+++|+||||||||||+++|+|+++ |++|+|.+
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-----p~~G~i~~ 74 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKA---LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-----PTGGELYY 74 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeE---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCcEEEE
Confidence 4579999999999631 11357 555999999999999999999999999999999999 99999999
Q ss_pred cccccCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccC
Q 018083 156 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 156 ~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~g 232 (361)
+|+++.... ...+...++.+++|||++. +.+. ++.+++..+...+....+.+.++++.++++.++
T Consensus 75 ~g~~l~~~~------------~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g 142 (327)
T PRK11308 75 QGQDLLKAD------------PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVG 142 (327)
T ss_pred CCEEcCcCC------------HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCC
Confidence 998874100 0112234567899999973 4443 677776654432222234456678899999999
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------Cc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 286 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~ 286 (361)
|.+. .+++++++||||||||++||||| ||||++||. |.
T Consensus 143 L~~~----------------~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~ 206 (327)
T PRK11308 143 LRPE----------------HYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGL 206 (327)
T ss_pred CChH----------------HhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 9642 45899999999999999999999 999999752 89
Q ss_pred cEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 287 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
|||+||| ..+..+||||+ +|++|++++.|++++++..|.++|++.++....
T Consensus 207 til~iTHdl~~~~~~adrv~-vm~~G~ive~g~~~~~~~~p~hpyt~~ll~~~p 259 (327)
T PRK11308 207 SYVFISHDLSVVEHIADEVM-VMYLGRCVEKGTKEQIFNNPRHPYTQALLSATP 259 (327)
T ss_pred EEEEEeCCHHHHHHhCCEEE-EEECCEEEEECCHHHHhcCCCCHHHHHHHHhCC
Confidence 9999999 46668999996 599999999999999999999998877766543
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=328.83 Aligned_cols=204 Identities=15% Similarity=0.175 Sum_probs=172.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccc--ceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER--AQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~--G~I~i~G~~i~~ 162 (361)
.|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~~~G~i~~~g~~~~- 72 (362)
T TIGR03258 5 GIRIDHLRVAYGAN---TV---LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-----AAGLTGRIAIADRDLT- 72 (362)
T ss_pred EEEEEEEEEEECCe---EE---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCEEEEECCEECC-
Confidence 48899999999753 46 666999999999999999999999999999999999 999 99999998764
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
... ..++.+++|||++.+|+. ++.+|+.+++... ..++.+.++++.++++.++|.+
T Consensus 73 --------------~~~--~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~------ 129 (362)
T TIGR03258 73 --------------HAP--PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGD------ 129 (362)
T ss_pred --------------CCC--HHHCCEEEEECCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCc------
Confidence 111 123468999999999988 9999999886522 2334556678899999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC------------------CccEEEEEc-
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~------------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| |||+++||. |+|+|+|||
T Consensus 130 -----------~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd 198 (362)
T TIGR03258 130 -----------AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHD 198 (362)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 56999999999999999999999 999999642 589999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+++..+||||+ +|++|++++.|++++++..|.+.+++.++.
T Consensus 199 ~~ea~~l~dri~-vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 240 (362)
T TIGR03258 199 QDDALTLADKAG-IMKDGRLAAHGEPQALYDAPADGFAAEFLG 240 (362)
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCcCcHHHHHhhC
Confidence 57889999996 599999999999999999886655544444
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=303.94 Aligned_cols=200 Identities=18% Similarity=0.251 Sum_probs=168.4
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.+++++++|+++|++ ..|+++ |||+|++||+++||||||||||||+|+|+|+|+ |++|+|.++|++++.
T Consensus 2 ~~lL~v~~l~k~FGG---l~Al~~---Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-----P~~G~v~~~G~~it~ 70 (250)
T COG0411 2 TPLLEVRGLSKRFGG---LTAVND---VSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-----PSSGTVIFRGRDITG 70 (250)
T ss_pred CceeeeccceeecCC---EEEEec---eeEEEcCCeEEEEECCCCCCceeeeeeeccccc-----CCCceEEECCcccCC
Confidence 357899999999987 578555 999999999999999999999999999999999 999999999999872
Q ss_pred ceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEE-----------ecCCChhhhhhhccccc
Q 018083 163 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVI-----------RRSDSSSLRNRMRCKAH 229 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~-----------~~~~~~~~~~~v~~~l~ 229 (361)
...+.. +..+...||++.+|+. |+.+|+..+.... .....++..+++.++|+
T Consensus 71 ---------------l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le 135 (250)
T COG0411 71 ---------------LPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE 135 (250)
T ss_pred ---------------CCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHH
Confidence 121111 2223446899999888 9999998874321 01134677889999999
Q ss_pred ccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------
Q 018083 230 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 284 (361)
Q Consensus 230 ~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------- 284 (361)
.+||.+ .++++..+||+|||+|+.||||| |||.+|+.+
T Consensus 136 ~vgL~~-----------------~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~ 198 (250)
T COG0411 136 FVGLGE-----------------LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR 198 (250)
T ss_pred HcCCch-----------------hhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc
Confidence 999998 56999999999999999999999 999999532
Q ss_pred -CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 285 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 285 -g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|.||++|.| +.+..+||||+ ||+.|+++++|+|+++.++|.
T Consensus 199 ~g~tillIEHdM~~Vm~l~dri~-Vl~~G~~IAeG~P~eV~~dp~ 242 (250)
T COG0411 199 GGVTILLIEHDMKLVMGLADRIV-VLNYGEVIAEGTPEEVRNNPR 242 (250)
T ss_pred CCcEEEEEEeccHHHhhhccEEE-eccCCcCcccCCHHHHhcCHH
Confidence 699999999 68889999996 699999999999999988875
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=326.87 Aligned_cols=205 Identities=12% Similarity=0.159 Sum_probs=170.5
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+.|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~i~~l~~~~~~~---~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-----p~~G~I~~~g~~i~~- 69 (369)
T PRK11000 2 ASVTLRNVTKAYGDV---VI---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-----ITSGDLFIGEKRMND- 69 (369)
T ss_pred CEEEEEEEEEEeCCe---EE---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC-
Confidence 468999999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. ..+..++|++|++.+++. ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 70 --------------~~--~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~lgL~~------- 125 (369)
T PRK11000 70 --------------VP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLA-GAKKEEINQRVNQVAEVLQLAH------- 125 (369)
T ss_pred --------------CC--HhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChh-------
Confidence 11 113458899999988876 9999999875422 2233455677889999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
++++++.+||||||||++||||| |||+++||. +.|+|++|| +
T Consensus 126 ----------~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 126 ----------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 45899999999999999999999 999999753 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
++..+||+++ +|++|++++.|++++++..|...++..++.
T Consensus 196 ~~~~~~d~i~-vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g 235 (369)
T PRK11000 196 EAMTLADKIV-VLDAGRVAQVGKPLELYHYPANRFVAGFIG 235 (369)
T ss_pred HHHHhCCEEE-EEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 6789999996 599999999999999998887655544443
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=354.67 Aligned_cols=230 Identities=15% Similarity=0.198 Sum_probs=194.5
Q ss_pred hhhhhhhHHHHHHHHhHHHHHhh---------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCC
Q 018083 59 VDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 129 (361)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~---------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSG 129 (361)
...|.++.++.++++..|.+... ..+.++++||+|+|+.+..+++|+| +||+|++|+++|||||||||
T Consensus 315 ~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g---~sl~i~~G~~valVG~SGsG 391 (1228)
T KOG0055|consen 315 AKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKG---VSLKIPSGQTVALVGPSGSG 391 (1228)
T ss_pred hccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCC---eEEEeCCCCEEEEECCCCCC
Confidence 44455566888888777654322 3457999999999988765677555 99999999999999999999
Q ss_pred cchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccce
Q 018083 130 KSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE 209 (361)
Q Consensus 130 KSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~ 209 (361)
|||++++|.|+|+ |++|+|++||.++. .+...++|..+++|.|+|.+|..+|.+||.+|.
T Consensus 392 KST~i~LL~Rfyd-----P~~G~V~idG~di~---------------~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~ 451 (1228)
T KOG0055|consen 392 KSTLIQLLARFYD-----PTSGEVLIDGEDIR---------------NLNLKWLRSQIGLVSQEPVLFATTIRENIRYGK 451 (1228)
T ss_pred HHHHHHHHHHhcC-----CCCceEEEcCccch---------------hcchHHHHhhcCeeeechhhhcccHHHHHhcCC
Confidence 9999999999999 99999999999997 577788999999999999999999999999876
Q ss_pred eEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCce
Q 018083 210 LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYL 280 (361)
Q Consensus 210 ~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~ 280 (361)
+ ++.++++.+++++++..+.+..-++.|.+.|.+. ..+||||||||+|||||| ||||+
T Consensus 452 ~-------dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~------g~qLSGGQKQRIAIARalv~~P~ILLLDEaTS 518 (1228)
T KOG0055|consen 452 P-------DATREEIEEAAKAANAHDFILKLPDGYDTLVGER------GVQLSGGQKQRIAIARALVRNPKILLLDEATS 518 (1228)
T ss_pred C-------cccHHHHHHHHHHccHHHHHHhhHHhhcccccCC------CCCCChHHHHHHHHHHHHHhCCCEEEecCccc
Confidence 5 4567788888888888776666666777766554 346999999999999999 99999
Q ss_pred eecC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 281 SFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 281 ~L~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+||. |+|.|+|+| -...+.||+|+ ||++|+|++.|+|++++..+
T Consensus 519 aLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~-v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 519 ALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIA-VMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred ccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEE-EEECCEEEEecCHHHHHhcc
Confidence 9874 999999999 34445599996 69999999999999998875
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=341.38 Aligned_cols=222 Identities=12% Similarity=0.127 Sum_probs=186.8
Q ss_pred hhHHHHHHHHhHHHHHhhh------ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhh
Q 018083 64 RDAVFREVLQSYDQLRTRI------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 137 (361)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~~------~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I 137 (361)
...|+.++++.+++.++.. ...|+++|++++|+++. ++ |+|+||+|++||++|||||||||||||+++|
T Consensus 301 a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~~~--~v---l~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL 375 (567)
T COG1132 301 AAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKK--PV---LKDISFSIEPGEKVAIVGPSGSGKSTLIKLL 375 (567)
T ss_pred HHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCCCC--cc---ccCceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3449999998766544332 13489999999998543 45 6669999999999999999999999999999
Q ss_pred hhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCC
Q 018083 138 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 217 (361)
Q Consensus 138 ~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~ 217 (361)
+|+++ |++|+|.+||+++. .+...++|..+++|+|++.+|..||.+||.++..
T Consensus 376 ~r~~~-----~~~G~I~idg~dI~---------------~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~------- 428 (567)
T COG1132 376 LRLYD-----PTSGEILIDGIDIR---------------DISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP------- 428 (567)
T ss_pred hccCC-----CCCCeEEECCEehh---------------hcCHHHHHHhccEEcccceeecccHHHHHhcCCC-------
Confidence 99999 99999999999997 5777888999999999999999999999998755
Q ss_pred hhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----
Q 018083 218 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 284 (361)
Q Consensus 218 ~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---- 284 (361)
+..++++.++++.+++++.+...++++.++|++ ....||||||||++||||+ ||||+++|.
T Consensus 429 ~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge------~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~ 502 (567)
T COG1132 429 DATDEEIEEALKLANAHEFIANLPDGYDTIVGE------RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEA 502 (567)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCcccccceecC------CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHH
Confidence 244577888888888887766667777777764 3557999999999999999 999999763
Q ss_pred -----------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 -----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 -----------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+|+| -...+.||+|. ||++|++++.|+|++++..
T Consensus 503 ~I~~~l~~l~~~rT~iiIaHRlsti~~aD~Ii-Vl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 503 LIQDALKKLLKGRTTLIIAHRLSTIKNADRII-VLDNGRIVERGTHEELLAK 553 (567)
T ss_pred HHHHHHHHHhcCCEEEEEeccHhHHHhCCEEE-EEECCEEEEecCHHHHHHc
Confidence 679999999 34445599995 6999999999999999876
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=321.79 Aligned_cols=222 Identities=13% Similarity=0.145 Sum_probs=171.5
Q ss_pred hccccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc---cceeeecc
Q 018083 82 IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNS 157 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~---~G~I~i~G 157 (361)
.+++|+++||++.|+.. ....+ +++|||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-----p~~~~sG~I~~~G 80 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTA---VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-----ANGRIGGSATFNG 80 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEE---EeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCCCCeEEEECC
Confidence 55689999999999632 12357 555999999999999999999999999999999998 74 99999999
Q ss_pred cccCcceEeEeeeecCCCcceeeeecC-CCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCC
Q 018083 158 SVGDGTYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 233 (361)
Q Consensus 158 ~~i~~~~~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl 233 (361)
+++.... ...+...+ ..++||||++. +.+. ++.+++.+....+......+..+++.++++.++|
T Consensus 81 ~~i~~~~------------~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL 148 (330)
T PRK09473 81 REILNLP------------EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM 148 (330)
T ss_pred EECCcCC------------HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 8875100 00111122 36889999973 3343 5666665544322222334556778889999999
Q ss_pred CcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------Ccc
Q 018083 234 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKP 287 (361)
Q Consensus 234 ~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~t 287 (361)
.+.. ..++++|++|||||+||++||||| ||||++||. +.|
T Consensus 149 ~~~~--------------~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~t 214 (330)
T PRK09473 149 PEAR--------------KRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTA 214 (330)
T ss_pred CChH--------------HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCE
Confidence 7511 135789999999999999999999 999999752 789
Q ss_pred EEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 288 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 288 vIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
+|+||| ..+..+||||+ +|++|+|++.|++++++..|.++|++.++..+.
T Consensus 215 il~iTHdl~~~~~~~Dri~-vm~~G~ive~g~~~~i~~~p~~pyt~~l~~~~~ 266 (330)
T PRK09473 215 IIMITHDLGVVAGICDKVL-VMYAGRTMEYGNARDVFYQPSHPYSIGLLNAVP 266 (330)
T ss_pred EEEEECCHHHHHHhCCEEE-EEECCEEEEECCHHHHHhCCCCHHHHHHHHhCC
Confidence 999999 45668999996 599999999999999999999999887766543
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=303.13 Aligned_cols=198 Identities=18% Similarity=0.208 Sum_probs=158.7
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~~- 68 (235)
T cd03261 1 IELRGLTKSFGGR---TV---LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-----PDSGEVLIDGEDISGLS- 68 (235)
T ss_pred CeEEEEEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccC-
Confidence 5789999999753 45 666999999999999999999999999999999999 99999999998764100
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.......+..+++++|++.+++. ++.+|+.++.......+.....+++.++++.+++.+
T Consensus 69 -----------~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 128 (235)
T cd03261 69 -----------EAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG--------- 128 (235)
T ss_pred -----------hhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch---------
Confidence 00011234568899999888776 999999876432111223344567788899999977
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 129 --------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~ 200 (235)
T cd03261 129 --------AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTA 200 (235)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH
Confidence 45889999999999999999999 999999652 789999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
..+|||++ +|++|+++..|++++++..
T Consensus 201 ~~~~d~v~-~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 201 FAIADRIA-VLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHhcCEEE-EEECCeEEEecCHHHHcCC
Confidence 78999996 5999999999998887653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=331.44 Aligned_cols=225 Identities=17% Similarity=0.199 Sum_probs=182.6
Q ss_pred cccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++|+++||++.|... .++.+++| |||+|.+||++||||+|||||||++++|.|+++.+. ...+|+|.|+|+++..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~---vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~dl~~ 79 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRD---VSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRDLLG 79 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeec---ceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcchhc
Confidence 489999999999644 23467555 999999999999999999999999999999999442 2458999999997652
Q ss_pred ceEeEeeeecCCCcceeeeecC-CCCcccccchHH--HH-HHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINM--IK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~~l--~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
... -.....| ..++++||+++- -| .+|.+.|......+.....++.++++.++|++++|.+..
T Consensus 80 l~~------------~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~- 146 (539)
T COG1123 80 LSE------------REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPE- 146 (539)
T ss_pred CCH------------HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChh-
Confidence 110 0011222 458899999753 23 288888887776666555778889999999999998743
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
..++||++||||||||++||+|| ||||.+||. |+++|+||
T Consensus 147 --------------~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~IT 212 (539)
T COG1123 147 --------------RRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFIT 212 (539)
T ss_pred --------------hhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence 12569999999999999999999 999999763 99999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhhHH
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 340 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~~l 340 (361)
| ..++++||||+ ||++|++++.|++++||.+|.|+|++.++.+...+
T Consensus 213 HDl~Vva~~aDrv~-Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~ 261 (539)
T COG1123 213 HDLGVVAELADRVV-VMYKGEIVETGPTEEILSNPQHPYTRGLLAAVPRL 261 (539)
T ss_pred CCHHHHHHhcCeEE-EEECCEEEEecCHHHHHhccCCcccHHHHhhCCCc
Confidence 9 57789999995 69999999999999999999999998887765444
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=339.48 Aligned_cols=222 Identities=13% Similarity=0.080 Sum_probs=180.4
Q ss_pred hhhHHHHHHHHhHHHHH-h-----h--hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh
Q 018083 63 RRDAVFREVLQSYDQLR-T-----R--IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 134 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~-~-----~--~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl 134 (361)
....|+.++++.+++.. . . ....++++||++.|.++. ++ |+|+||+|++|+++||+||||||||||+
T Consensus 319 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~--~v---L~~i~l~i~~G~~vaIvG~SGsGKSTL~ 393 (588)
T PRK11174 319 GAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGK--TL---AGPLNFTLPAGQRIALVGPSGAGKTSLL 393 (588)
T ss_pred HHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCC--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHH
Confidence 34459999986543211 0 0 112489999998665443 45 6669999999999999999999999999
Q ss_pred hhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec
Q 018083 135 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 214 (361)
Q Consensus 135 ~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~ 214 (361)
++|+|+++ ++|+|.++|.++. .+...+.|+.+++|+|++.+|..|+.+||.++.+
T Consensus 394 ~lL~g~~p------~~G~I~i~g~~i~---------------~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~---- 448 (588)
T PRK11174 394 NALLGFLP------YQGSLKINGIELR---------------ELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP---- 448 (588)
T ss_pred HHHhcCCC------CCcEEEECCEecc---------------cCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC----
Confidence 99999984 5899999999886 4566778889999999999999999999997632
Q ss_pred CCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-
Q 018083 215 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 284 (361)
Q Consensus 215 ~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~- 284 (361)
+..++++.++++.+++++.+...++.+.+.|++. ...||||||||++||||| ||||++||.
T Consensus 449 ---~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~------G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~ 519 (588)
T PRK11174 449 ---DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ------AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519 (588)
T ss_pred ---CCCHHHHHHHHHHhCHHHHHHhcccccccccccC------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 3445778888999999887766777777766553 457999999999999998 999999763
Q ss_pred --------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 --------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ....+.||+|+ +|++|++++.|++++++..
T Consensus 520 te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Ii-vl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 520 SEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW-VMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEE-EEeCCeEeecCCHHHHHhc
Confidence 799999999 45567799995 6999999999999998764
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=300.46 Aligned_cols=180 Identities=20% Similarity=0.302 Sum_probs=157.5
Q ss_pred ccccccccceeeecCcc------eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 83 GSLTDAKNKILSYTPGA------WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~------~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
+++++++||++.|..+. .+.|++| |||+|++||+++|||+||||||||.|+|.||++ |++|+|+++
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~---Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-----pt~G~i~f~ 73 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDG---VSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-----PTSGEILFE 73 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecc---eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-----CCCceEEEc
Confidence 45799999999996432 2578666 999999999999999999999999999999999 999999999
Q ss_pred ccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcc
Q 018083 157 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 157 G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
|+++.. +. ..+..+++.++|+.+|+.++
T Consensus 74 g~~i~~---------------~~-------------------------------------~~~~~~~v~elL~~Vgl~~~ 101 (268)
T COG4608 74 GKDITK---------------LS-------------------------------------KEERRERVLELLEKVGLPEE 101 (268)
T ss_pred Ccchhh---------------cc-------------------------------------hhHHHHHHHHHHHHhCCCHH
Confidence 988751 11 14456788999999998764
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 290 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIi 290 (361)
.+.++|++|||||+||++||||| |||+|+||- |.|.++
T Consensus 102 ----------------~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lF 165 (268)
T COG4608 102 ----------------FLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLF 165 (268)
T ss_pred ----------------HhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEE
Confidence 47999999999999999999999 999999753 999999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhhH
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 339 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~~ 339 (361)
||| ..+..+||||+ ||+.|+|++.|+.+++|.+|.|+|++.++.+...
T Consensus 166 IsHDL~vv~~isdri~-VMy~G~iVE~g~~~~~~~~p~HpYTk~Ll~a~p~ 215 (268)
T COG4608 166 ISHDLSVVRYISDRIA-VMYLGKIVEIGPTEEVFSNPLHPYTKALLSAVPV 215 (268)
T ss_pred EEEEHHhhhhhcccEE-EEecCceeEecCHHHHhhCCCCHHHHHHHHhCCc
Confidence 999 56779999997 5999999999999999999999999988887654
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=322.67 Aligned_cols=197 Identities=15% Similarity=0.187 Sum_probs=164.3
Q ss_pred eeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeec
Q 018083 93 LSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIP 172 (361)
Q Consensus 93 ~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~ 172 (361)
++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++.
T Consensus 1 ~~~~~~---~~---l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-----p~~G~I~i~G~~i~----------- 58 (363)
T TIGR01186 1 KKTGGK---KG---VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-----PTAGQIFIDGENIM----------- 58 (363)
T ss_pred CccCCc---ee---EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-----CCceEEEECCEECC-----------
Confidence 356543 45 666999999999999999999999999999999999 99999999998875
Q ss_pred CCCcceeeeec----CCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEE
Q 018083 173 RGSNSFSLYDT----RSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFV 247 (361)
Q Consensus 173 ~~~~~~~~~d~----r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~v 247 (361)
....... +..++||||++.+|+. ++.+|+.++.... ..++.+..+++.++++.++|..
T Consensus 59 ----~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~-~~~~~~~~~~~~~~l~~vgL~~------------ 121 (363)
T TIGR01186 59 ----KQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL-GWPEQERKEKALELLKLVGLEE------------ 121 (363)
T ss_pred ----cCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCch------------
Confidence 1122222 4678999999999987 9999999876432 2234456678899999999987
Q ss_pred EechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cccccc
Q 018083 248 VDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSL 299 (361)
Q Consensus 248 v~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~ 299 (361)
+++++|.+||||||||++||||| |||+++||+ ++|||+||| +++.++
T Consensus 122 -----~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~ 196 (363)
T TIGR01186 122 -----YEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRI 196 (363)
T ss_pred -----hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 46999999999999999999999 999999753 799999999 578899
Q ss_pred cchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 300 TDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
||||+ +|++|++++.|++++++..|.++++..++
T Consensus 197 ~drI~-vl~~G~iv~~g~~~ei~~~p~~~~~~~~~ 230 (363)
T TIGR01186 197 GDRIV-IMKAGEIVQVGTPDEILRNPANEYVEEFI 230 (363)
T ss_pred CCEEE-EEeCCEEEeeCCHHHHHhCcccHHHHHHh
Confidence 99996 59999999999999999888766554443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=343.76 Aligned_cols=225 Identities=8% Similarity=0.078 Sum_probs=181.9
Q ss_pred hhhhHHHHHHHHhHHHHHhh--------------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCC
Q 018083 62 RRRDAVFREVLQSYDQLRTR--------------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKG 127 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~--------------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnG 127 (361)
+....|+.++++.+++.... ....|+++|++|+|++.. .++ |+|+||+|++|+.++|+||||
T Consensus 440 ~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~-~~v---L~~isl~i~~Ge~vaIvG~sG 515 (710)
T TIGR03796 440 EGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLE-PPL---IENFSLTLQPGQRVALVGGSG 515 (710)
T ss_pred HHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCC-CCc---ccceeEEEcCCCEEEEECCCC
Confidence 34455999998654332110 123589999999997542 245 666999999999999999999
Q ss_pred CCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhcccc
Q 018083 128 SGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH 207 (361)
Q Consensus 128 SGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~ 207 (361)
||||||+++|+|+++ |++|+|.+||.++. .+...+.|+.+++|+|++.+|..++.+||.+
T Consensus 516 sGKSTLlklL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l 575 (710)
T TIGR03796 516 SGKSTIAKLVAGLYQ-----PWSGEILFDGIPRE---------------EIPREVLANSVAMVDQDIFLFEGTVRDNLTL 575 (710)
T ss_pred CCHHHHHHHHhcCCC-----CCCcEEEECCEeHH---------------HCCHHHHHhheeEEecCChhhhccHHHHhhC
Confidence 999999999999999 99999999999886 4566678899999999999999999999986
Q ss_pred ceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCC
Q 018083 208 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 278 (361)
Q Consensus 208 ~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEP 278 (361)
+.. +...+++.++++.+++.+.+...++.+.+.+.+ ....||||||||++||||| |||
T Consensus 576 ~~~-------~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e------~G~~LSGGQrQRiaLARall~~p~iliLDEp 642 (710)
T TIGR03796 576 WDP-------TIPDADLVRACKDAAIHDVITSRPGGYDAELAE------GGANLSGGQRQRLEIARALVRNPSILILDEA 642 (710)
T ss_pred CCC-------CCCHHHHHHHHHHhCCHHHHHhCcCcccceecc------CCCCCCHHHHHHHHHHHHHhhCCCEEEEECc
Confidence 432 234566777888888887665555565555544 3557999999999999999 999
Q ss_pred ceeecC-------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 279 YLSFRD-------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 279 t~~L~~-------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|++||. ++|+|+||| ......||||+ +|++|++++.|++++++..
T Consensus 643 tS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Ii-vl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 643 TSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEII-VLERGKVVQRGTHEELWAV 701 (710)
T ss_pred cccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEE-EEeCCEEEEecCHHHHHHc
Confidence 999864 899999999 45567799995 6999999999999998764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=341.63 Aligned_cols=226 Identities=13% Similarity=0.125 Sum_probs=183.6
Q ss_pred hhhhhhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 60 DQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 60 ~~~~~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
..+....|+.++++.+++.... ....++++||+++|++.. .++ |+|+||+|++||.+||+||||||||||
T Consensus 420 ~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaIvG~sGsGKSTL 495 (686)
T TIGR03797 420 AVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDG-PLI---LDDVSLQIEPGEFVAIVGPSGSGKSTL 495 (686)
T ss_pred HHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCCCC-ccc---eeeeEEEECCCCEEEEECCCCCCHHHH
Confidence 3344455888988755442211 123589999999996432 245 666999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 134 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
+|+|+|+++ |++|+|.+||.++. .+...+.|..+++|+|++.+|+.|+.+||.++..
T Consensus 496 lklL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~--- 552 (686)
T TIGR03797 496 LRLLLGFET-----PESGSVFYDGQDLA---------------GLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP--- 552 (686)
T ss_pred HHHHhCCCC-----CCCCEEEECCEEcC---------------cCCHHHHHhccEEEccCCccCcccHHHHHhcCCC---
Confidence 999999999 99999999999987 4566678889999999999999999999997532
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
...+++.++++.+++.+.+...++.+.+.+++ ....||||||||++||||| ||||++||.
T Consensus 553 -----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige------~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~ 621 (686)
T TIGR03797 553 -----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISE------GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621 (686)
T ss_pred -----CCHHHHHHHHHHcCcHHHHHhccccccccccC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 23466788899999987665556666665544 3457999999999999999 999999874
Q ss_pred -------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 -------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ....+.||+|+ +|++|++++.|++++++..
T Consensus 622 ~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Ii-vl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 622 RTQAIVSESLERLKVTRIVIAHRLSTIRNADRIY-VLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEE-EEECCEEEEECCHHHHHhC
Confidence 789999999 45567799995 6999999999999998764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=347.63 Aligned_cols=226 Identities=12% Similarity=0.117 Sum_probs=197.0
Q ss_pred hhhhhHHHHHHHHhHHHHHhh---------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcc
Q 018083 61 QRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 131 (361)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~---------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKS 131 (361)
.+.+++++-++++.++.+... ..+-|+++||+|+|+.+..+++++| +||+|++|+++|||||||||||
T Consensus 954 a~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~---l~l~i~~GqTvALVG~SGsGKS 1030 (1228)
T KOG0055|consen 954 AKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNN---LSLSIRAGQTVALVGPSGSGKS 1030 (1228)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcC---CcEEecCCCEEEEECCCCCCHH
Confidence 344566888888877754332 2335999999999997766778555 9999999999999999999999
Q ss_pred hhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeE
Q 018083 132 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 211 (361)
Q Consensus 132 TLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~ 211 (361)
|.+.+|-++|+ |++|.|.+||.+++ ++.+..+|+.++.|.|+|.||..||++||.+|..
T Consensus 1031 TvI~LLeRfYd-----p~~G~V~IDg~dik---------------~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~- 1089 (1228)
T KOG0055|consen 1031 TVISLLERFYD-----PDAGKVKIDGVDIK---------------DLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE- 1089 (1228)
T ss_pred HHHHHHHHhcC-----CCCCeEEECCcccc---------------cCCHHHHHHhcceeccCchhhcccHHHHHhccCC-
Confidence 99999999999 99999999999998 6888999999999999999999999999999822
Q ss_pred EecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceee
Q 018083 212 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 282 (361)
Q Consensus 212 ~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L 282 (361)
+..++++.++++.++.++.+..-+++|++.|+++ ..+||||||||+|||||+ ||.||+|
T Consensus 1090 ------~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGer------G~QLSGGQKQRIAIARAilRnPkILLLDEATSAL 1157 (1228)
T KOG0055|consen 1090 ------EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGER------GVQLSGGQKQRIAIARAILRNPKILLLDEATSAL 1157 (1228)
T ss_pred ------CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcc------cCcCCchHHHHHHHHHHHHcCCCeeeeeccchhh
Confidence 2567788899999999888777788898877765 569999999999999998 9999998
Q ss_pred cC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 283 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 283 ~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
|- |+|.|+|+| -.-.+.||.|+ |+++|+|++.|+|++++.
T Consensus 1158 DseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~-Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1158 DSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIA-VLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred hhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEE-EEECCEEEecccHHHHHh
Confidence 62 999999999 56678899996 599999999999999988
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=342.44 Aligned_cols=225 Identities=12% Similarity=0.129 Sum_probs=182.8
Q ss_pred hhhhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 62 RRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
+....|+.++++.+++.... ..+.|+++|++|+|+++. ++ |+|+||+|++|+.+||+||||||||||
T Consensus 442 ~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~--~i---L~~isl~i~~G~~vaIvG~SGsGKSTL 516 (708)
T TIGR01193 442 RVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGS--NI---LSDISLTIKMNSKTTIVGMSGSGKSTL 516 (708)
T ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCCC--cc---eeceeEEECCCCEEEEECCCCCCHHHH
Confidence 34455999998755442211 123589999999997543 45 666999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 134 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
+++|+|+++ |++|+|.+||.++. .+...+.|..+++|+|++.+|..|+.+||.++..
T Consensus 517 lklL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~--- 573 (708)
T TIGR01193 517 AKLLVGFFQ-----ARSGEILLNGFSLK---------------DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK--- 573 (708)
T ss_pred HHHHhccCC-----CCCcEEEECCEEHH---------------HcCHHHHHHheEEEecCceehhHHHHHHHhccCC---
Confidence 999999999 99999999999886 4566678889999999999999999999997631
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
+....+++.++++.+++.+.+.+.++.+.+.|.+ ....||||||||++||||| ||||++||.
T Consensus 574 ---~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e------~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~ 644 (708)
T TIGR01193 574 ---ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSE------EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDT 644 (708)
T ss_pred ---CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecC------CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCH
Confidence 1233466778888888877665556666665544 3567999999999999998 999999763
Q ss_pred --------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 --------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ......||+|+ +|++|++++.|++++++..
T Consensus 645 ~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~-~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 645 ITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKII-VLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEE-EEECCEEEEECCHHHHHhc
Confidence 789999999 55667899995 6999999999999998764
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=315.34 Aligned_cols=225 Identities=12% Similarity=0.162 Sum_probs=168.7
Q ss_pred ccccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 83 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+++|+++||++.|+.. ....+ |++|||+|.+||+++|+|+||||||||+++|+|+++.. ..|++|+|+++|+++.
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~---l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-~~~~~G~i~~~g~~i~ 76 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKA---VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDIDLL 76 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEE---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC-CCCcceEEEECCEECC
Confidence 3579999999999532 11356 55599999999999999999999999999999998621 1158999999998874
Q ss_pred cceEeEeeeecCCCcceeeeec-CCCCcccccchH--HHHH-HHHhccccceeEEe--c---CCChhhhhhhcccccccC
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNIN--MIKL-WIMEGVRHGELVIR--R---SDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~--~---~~~~~~~~~v~~~l~~~g 232 (361)
... ....... +..++||||++. +.+. ++.+++.+...... . ......++++.++++.++
T Consensus 77 ~~~------------~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g 144 (330)
T PRK15093 77 RLS------------PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVG 144 (330)
T ss_pred cCC------------HHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCC
Confidence 100 0011111 236889999875 3333 67777765322110 0 011234567889999999
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------Cc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 286 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~ 286 (361)
|.+.. ++++++|++||||||||++||||| ||||++||. |.
T Consensus 145 L~~~~--------------~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~ 210 (330)
T PRK15093 145 IKDHK--------------DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNT 210 (330)
T ss_pred CCChH--------------HHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 97511 145899999999999999999999 999999752 78
Q ss_pred cEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 287 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
|||+||| ..+..+||||+ +|++|+|++.|++++++..|.+++++.++....
T Consensus 211 tii~itHdl~~v~~~~dri~-vm~~G~ive~g~~~~i~~~p~~~y~~~ll~~~~ 263 (330)
T PRK15093 211 TILLISHDLQMLSQWADKIN-VLYCGQTVETAPSKELVTTPHHPYTQALIRAIP 263 (330)
T ss_pred EEEEEECCHHHHHHhCCEEE-EEECCEEEEECCHHHHHhCCCCHHHHHHHHhCC
Confidence 9999999 56778999996 599999999999999999988888766665443
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=332.78 Aligned_cols=224 Identities=12% Similarity=0.119 Sum_probs=183.1
Q ss_pred hhhhHHHHHHHHhHHHHHhh-------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh
Q 018083 62 RRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 134 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~-------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl 134 (361)
+.+..|+.++++.+++.... ..+.|+++|++++|+++. .++ |+|+||+|++|++++|+||||||||||+
T Consensus 308 ~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~i---l~~i~~~i~~G~~~aivG~sGsGKSTL~ 383 (574)
T PRK11160 308 IASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQP-QPV---LKGLSLQIKAGEKVALLGRTGCGKSTLL 383 (574)
T ss_pred HHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCCC-Ccc---eecceEEECCCCEEEEECCCCCCHHHHH
Confidence 34455999998765442211 123599999999997542 145 6669999999999999999999999999
Q ss_pred hhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec
Q 018083 135 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 214 (361)
Q Consensus 135 ~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~ 214 (361)
++|+|+++ |++|+|.++|.++. .+...+.|..+++|+|++.+|..++.+|+.++..
T Consensus 384 ~ll~g~~~-----p~~G~I~i~g~~i~---------------~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~---- 439 (574)
T PRK11160 384 QLLTRAWD-----PQQGEILLNGQPIA---------------DYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP---- 439 (574)
T ss_pred HHHhcCCC-----CCCceEEECCEEhh---------------hCCHHHHHhheeEEcccchhhcccHHHHhhcCCC----
Confidence 99999999 99999999999886 4556677888999999999999999999987543
Q ss_pred CCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-
Q 018083 215 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 284 (361)
Q Consensus 215 ~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~- 284 (361)
+...+++.++++.+++.+.+.. ++++.+.|++ ....||||||||++||||| ||||++||.
T Consensus 440 ---~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge------~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~ 509 (574)
T PRK11160 440 ---NASDEALIEVLQQVGLEKLLED-DKGLNAWLGE------GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509 (574)
T ss_pred ---ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 2345678888999999887666 7777665544 4568999999999999999 999999763
Q ss_pred --------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 --------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ......||+|+ +|++|++++.|++++++..
T Consensus 510 t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 510 TERQILELLAEHAQNKTVLMITHRLTGLEQFDRIC-VMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEE-EEeCCeEEEeCCHHHHHhc
Confidence 899999999 44556799995 6999999999999988764
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=298.09 Aligned_cols=199 Identities=15% Similarity=0.239 Sum_probs=160.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 68 (239)
T cd03296 2 SIEVRNVSKRFGDF---VA---LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-----PDSGTILFGGEDATD-- 68 (239)
T ss_pred EEEEEeEEEEECCE---Ee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc--
Confidence 48899999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec---CCChhhhhhhcccccccCCCcceeEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~---~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
... .+..++|++|++.+++. ++.+|+.++...... .......+++.++++.+++.+
T Consensus 69 -------------~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 128 (239)
T cd03296 69 -------------VPV--QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW----- 128 (239)
T ss_pred -------------CCc--cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-----
Confidence 111 13457889999887765 899999876432111 012233456778899999976
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 129 ------------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 196 (239)
T cd03296 129 ------------LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196 (239)
T ss_pred ------------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45889999999999999999999 999999652 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
+.+..+||+++ +|++|+++..|++++++..+.++.
T Consensus 197 ~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~ 232 (239)
T cd03296 197 QEEALEVADRVV-VMNKGRIEQVGTPDEVYDHPASPF 232 (239)
T ss_pred HHHHHHhCCEEE-EEECCeEEEecCHHHHhcCCCcHH
Confidence 46778999996 599999999999988876554433
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=316.48 Aligned_cols=206 Identities=15% Similarity=0.191 Sum_probs=165.5
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
||+++|++++|+.+. ..++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++...
T Consensus 1 mi~i~~l~~~y~~~~~~~~i---l~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-----p~~G~I~~~g~~i~~~ 72 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHA---LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-----PTSGRVLVDGQDLTAL 72 (343)
T ss_pred CEEEEeEEEEeCCCCCceEE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCcC
Confidence 588999999997211 1256 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. .......+..++|++|++.+++. ++.+|+.++.... ..+....++++.++++.+++.+
T Consensus 73 --------~----~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------- 132 (343)
T PRK11153 73 --------S----EKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA-GTPKAEIKARVTELLELVGLSD------- 132 (343)
T ss_pred --------C----HHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 0 00111234568899999888775 8999998764321 2233445567888999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 133 ----------~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 133 ----------KADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD 202 (343)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45899999999999999999999 999999753 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
.+..+||+++ +|++|++++.|++++++..+....
T Consensus 203 ~i~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~ 236 (343)
T PRK11153 203 VVKRICDRVA-VIDAGRLVEQGTVSEVFSHPKHPL 236 (343)
T ss_pred HHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCcHH
Confidence 6778999996 599999999999999987765433
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=341.55 Aligned_cols=227 Identities=12% Similarity=0.116 Sum_probs=180.9
Q ss_pred hhhhHHHHHHHHhHHHHHhh-------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh
Q 018083 62 RRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 134 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~-------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl 134 (361)
+....|+.++++.+++.+.. ..+.|+++||+++|++....++ |+|+||+|++||+++|+||||||||||+
T Consensus 448 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v---L~~isl~i~~Ge~vaIvG~SGsGKSTLl 524 (711)
T TIGR00958 448 VGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPV---LKGLTFTLHPGEVVALVGPSGSGKSTVA 524 (711)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCcc---ccCceEEEcCCCEEEEECCCCCCHHHHH
Confidence 33455888888655432211 2235999999999975321246 5669999999999999999999999999
Q ss_pred hhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec
Q 018083 135 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 214 (361)
Q Consensus 135 ~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~ 214 (361)
++|.|+++ |++|+|.+||+++. .+...+.+..+++|+|++.+|..++.+||.++..
T Consensus 525 ~lL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~---- 580 (711)
T TIGR00958 525 ALLQNLYQ-----PTGGQVLLDGVPLV---------------QYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT---- 580 (711)
T ss_pred HHHHhccC-----CCCCEEEECCEEHH---------------hcCHHHHHhhceEEecCccccccCHHHHHhcCCC----
Confidence 99999999 99999999999886 4556677888999999999999999999997643
Q ss_pred CCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-
Q 018083 215 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 284 (361)
Q Consensus 215 ~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~- 284 (361)
...++++.++++.+++.+.+.+.++.+.+.+++ ....||||||||++||||| ||||++||.
T Consensus 581 ---~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige------~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~ 651 (711)
T TIGR00958 581 ---DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGE------KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE 651 (711)
T ss_pred ---CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccC------CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHH
Confidence 223466777888888877554444555554433 3557999999999999999 999999763
Q ss_pred ------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
++|+|+||| ......||+|+ +|++|++++.|+++++++..
T Consensus 652 te~~i~~~~~~~~~TvIiItHrl~~i~~aD~Ii-vL~~G~ive~Gt~~eL~~~~ 704 (711)
T TIGR00958 652 CEQLLQESRSRASRTVLLIAHRLSTVERADQIL-VLKKGSVVEMGTHKQLMEDQ 704 (711)
T ss_pred HHHHHHHhhccCCCeEEEEeccHHHHHhCCEEE-EEECCEEEEeeCHHHHHhCC
Confidence 799999999 45557799995 69999999999999987653
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=338.96 Aligned_cols=225 Identities=16% Similarity=0.168 Sum_probs=183.3
Q ss_pred hhhhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 62 RRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
+....|+.++++.+++.... ..+.|+++|++|+|++.. .++ |+|+||+|++|+.++|+||||||||||
T Consensus 432 ~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~~v---L~~i~l~i~~G~~iaIvG~sGsGKSTL 507 (694)
T TIGR03375 432 KTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQE-TPA---LDNVSLTIRPGEKVAIIGRIGSGKSTL 507 (694)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCC-ccc---eeeeeEEECCCCEEEEECCCCCCHHHH
Confidence 34455899998765442111 123589999999997532 145 666999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 134 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
+++|+|+++ |++|+|.+||.++. .+...+.|..+++|+|++.+|..|+.+|+.++..
T Consensus 508 lklL~gl~~-----p~~G~I~idg~~l~---------------~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~--- 564 (694)
T TIGR03375 508 LKLLLGLYQ-----PTEGSVLLDGVDIR---------------QIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP--- 564 (694)
T ss_pred HHHHhcCCC-----CCCceEEECCEEhh---------------hCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC---
Confidence 999999999 99999999999886 4566778889999999999999999999997533
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
....+++.++++.+++.+.+...++.+.+.+++ ....||||||||++||||| ||||++||.
T Consensus 565 ----~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e------~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~ 634 (694)
T TIGR03375 565 ----YADDEEILRAAELAGVTEFVRRHPDGLDMQIGE------RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDN 634 (694)
T ss_pred ----CCCHHHHHHHHHHcChHHHHHhCcccccceecC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 234567788888898887665566666665554 3457999999999999999 999999764
Q ss_pred ---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ....+.||+|+ +|++|++++.|++++++..
T Consensus 635 ~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~ii-vl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 635 RSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRII-VMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE-EEeCCEEEeeCCHHHHHHH
Confidence 799999999 45667899995 6999999999999988653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=315.61 Aligned_cols=233 Identities=14% Similarity=0.159 Sum_probs=201.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHHHHhh-----hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCC
Q 018083 54 SWDSLVDQRRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 128 (361)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGS 128 (361)
+|-.+...|.++.|++++|...|.-... .+..|.++++++.=++ ...++ |+++||++.+||.++|||||||
T Consensus 298 ~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg-~~~pi---l~~isF~l~~G~~lgIIGPSgS 373 (580)
T COG4618 298 NWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPG-QKKPI---LKGISFALQAGEALGIIGPSGS 373 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCC-CCCcc---eecceeEecCCceEEEECCCCc
Confidence 8999999999999999999887764332 4457999999985443 33466 5559999999999999999999
Q ss_pred CcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccc
Q 018083 129 GKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG 208 (361)
Q Consensus 129 GKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~ 208 (361)
|||||.|+|.|..+ |++|.|.+||.+++ .+....+-+++||.||+..+|+.||.+||+
T Consensus 374 GKSTLaR~lvG~w~-----p~~G~VRLDga~l~---------------qWd~e~lG~hiGYLPQdVeLF~GTIaeNIa-- 431 (580)
T COG4618 374 GKSTLARLLVGIWP-----PTSGSVRLDGADLR---------------QWDREQLGRHIGYLPQDVELFDGTIAENIA-- 431 (580)
T ss_pred cHHHHHHHHHcccc-----cCCCcEEecchhhh---------------cCCHHHhccccCcCcccceecCCcHHHHHH--
Confidence 99999999999999 99999999999987 456666778899999999999999999998
Q ss_pred eeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCc
Q 018083 209 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPY 279 (361)
Q Consensus 209 ~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt 279 (361)
...++...+++.++++..+.++-+.+.+++|.+.+.+. ...||||||||+++|||| |||-
T Consensus 432 -----Rf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~------G~~LSgGQRQRIaLARAlYG~P~lvVLDEPN 500 (580)
T COG4618 432 -----RFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEG------GATLSGGQRQRIALARALYGDPFLVVLDEPN 500 (580)
T ss_pred -----hccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCC------CCCCCchHHHHHHHHHHHcCCCcEEEecCCC
Confidence 34445667788899999999998888888998877774 458999999999999999 9999
Q ss_pred eeecC----------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 280 LSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 280 ~~L~~----------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++||. |.|+|+||| ..+...+|+|+ +|++|++-..|+.++++.+
T Consensus 501 sNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkil-vl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 501 SNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKIL-VLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred CCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceee-eecCChHHhcCCHHHHHHH
Confidence 99864 999999999 78888899996 5999999999999998764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=299.26 Aligned_cols=210 Identities=20% Similarity=0.252 Sum_probs=162.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 70 (250)
T PRK11264 2 SAIEVKNLVKKFHGQ---TV---LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-----PEAGTIRVGDITIDTA 70 (250)
T ss_pred CcEEEeceEEEECCe---ee---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcccc
Confidence 479999999999753 45 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
...... .......+..+++++|++.+++. ++.+|+.++.............+++.++++.+++.+
T Consensus 71 ~~~~~~-------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------- 136 (250)
T PRK11264 71 RSLSQQ-------KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG------- 136 (250)
T ss_pred ccccch-------hhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-------
Confidence 000000 00012234567889999877764 889998764321111222334566778899999986
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 137 ----------~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~ 206 (250)
T PRK11264 137 ----------KETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF 206 (250)
T ss_pred ----------hhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 34889999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
+..+||+++ +|++|++++.|++++++..+.+.+
T Consensus 207 ~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~ 239 (250)
T PRK11264 207 ARDVADRAI-FMDQGRIVEQGPAKALFADPQQPR 239 (250)
T ss_pred HHHhcCEEE-EEECCEEEEeCCHHHHhcCCCCHH
Confidence 778999996 599999999999998877665443
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=310.33 Aligned_cols=217 Identities=14% Similarity=0.192 Sum_probs=182.8
Q ss_pred hccccccccceeeecCc--------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee
Q 018083 82 IGSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 153 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~--------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I 153 (361)
..++++.+++.+.|+-+ ..+.|+++ |||++++|++++|||+||||||||-.+|.++++ +. |+|
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~---isl~L~~gqTlGlVGESGSGKsTlG~allrL~~-----s~-G~I 343 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDG---ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-----SQ-GEI 343 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEecc---ceeEecCCCeEEEEecCCCCcchHHHHHHhhcC-----cC-ceE
Confidence 55689999999999532 12567666 999999999999999999999999999999997 55 999
Q ss_pred eecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHH-HHHhccccceeEEe-cCCChhhhhhhccccc
Q 018083 154 TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELVIR-RSDSSSLRNRMRCKAH 229 (361)
Q Consensus 154 ~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~-~~~~~~~~~~v~~~l~ 229 (361)
.|+|+++.+.. .-...+.|+.+..|||||+ +-|. +|.+-|..|+..+. ..+..+..+++.++|+
T Consensus 344 ~F~G~~i~~~~------------~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~ 411 (534)
T COG4172 344 RFDGQDIDGLS------------RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALE 411 (534)
T ss_pred EECCccccccC------------hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHH
Confidence 99999987311 1234456778888999986 3344 78787888887665 4566788899999999
Q ss_pred ccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------
Q 018083 230 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 284 (361)
Q Consensus 230 ~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------- 284 (361)
.+||++.. .++||+++|||||||+|||||| |||||+||.
T Consensus 412 EVGLDp~~----------------r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k 475 (534)
T COG4172 412 EVGLDPAT----------------RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK 475 (534)
T ss_pred HcCCChhH----------------hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH
Confidence 99999853 5999999999999999999998 999999753
Q ss_pred -CccEEEEEcC--ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhh
Q 018083 285 -DKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 336 (361)
Q Consensus 285 -g~tvIiiTH~--~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~ 336 (361)
+.+-|+|||+ .+..+||+++ ||++|+|++.|+++++|++|.++|++.++.+
T Consensus 476 ~~LsYLFISHDL~VvrAl~~~vi-Vm~~GkiVE~G~~~~if~~P~~~YT~~L~~a 529 (534)
T COG4172 476 HGLSYLFISHDLAVVRALCHRVI-VMRDGKIVEQGPTEAVFANPQHEYTRALLAA 529 (534)
T ss_pred hCCeEEEEeccHHHHHHhhceEE-EEeCCEEeeeCCHHHHhcCCCcHHHHHHHHh
Confidence 8999999994 5679999995 6999999999999999999999999877654
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=298.58 Aligned_cols=207 Identities=21% Similarity=0.270 Sum_probs=162.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-----cceeeecccc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSSV 159 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-----~G~I~i~G~~ 159 (361)
+|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |+ +|+|.++|.+
T Consensus 1 ~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~~~~~~G~i~~~g~~ 69 (247)
T TIGR00972 1 AIEIENLNLFYGEK---EA---LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-----LVPGVRIEGKVLFDGQD 69 (247)
T ss_pred CEEEEEEEEEECCe---ee---ecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceEEEECCEE
Confidence 47899999999753 45 666999999999999999999999999999999999 87 9999999987
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
+... .......+..++|++|++.+++.++.+|+.++..........+..+++.++++.+++.+.+
T Consensus 70 ~~~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-- 134 (247)
T TIGR00972 70 IYDK-------------KIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV-- 134 (247)
T ss_pred cccc-------------ccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch--
Confidence 6410 0111223456888999887766788899887543211112234456778889999997210
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-- 293 (361)
...+++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 135 -----------~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~ 203 (247)
T TIGR00972 135 -----------KDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNM 203 (247)
T ss_pred -----------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCH
Confidence 0045889999999999999999999 999999763 689999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
+.+..+||+++ +|++|+++..|++++++..+.+..
T Consensus 204 ~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~ 238 (247)
T TIGR00972 204 QQAARISDRTA-FFYDGELVEYGPTEQIFTNPKEKR 238 (247)
T ss_pred HHHHHhCCEEE-EEECCEEEEeCCHHHHHhCCCChH
Confidence 46778999996 599999999999998887665543
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=305.41 Aligned_cols=201 Identities=15% Similarity=0.199 Sum_probs=162.1
Q ss_pred ccccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.|+++||++.|++.. ..++ |++|||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~---l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKA---LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-----PTSGKIIIDGVDITD 73 (287)
T ss_pred EEEEEEEEEECCCCCccccce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEECCEECCC
Confidence 388999999997421 0246 666999999999999999999999999999999999 999999999987751
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCC--ccee
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE--PSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~--~~~~ 238 (361)
. .......+..++|+||++. ++..++.+|+.++.... ..++.+..+++.++++.++|. +
T Consensus 74 ~-------------~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~--- 136 (287)
T PRK13637 74 K-------------KVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYED--- 136 (287)
T ss_pred c-------------CccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchh---
Confidence 0 0111234567899999873 45568999998764321 233445567788999999997 4
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
++++++.+||||||||++||||| ||||++||. |+|||++|
T Consensus 137 --------------~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vt 202 (287)
T PRK13637 137 --------------YKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS 202 (287)
T ss_pred --------------hccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 35889999999999999999999 999999753 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
| +++..+|||++ +|++|++++.|++++++..+
T Consensus 203 Hd~~~~~~~~drv~-~l~~G~i~~~g~~~~~~~~~ 236 (287)
T PRK13637 203 HSMEDVAKLADRII-VMNKGKCELQGTPREVFKEV 236 (287)
T ss_pred CCHHHHHHhCCEEE-EEECCEEEEECCHHHHHhCH
Confidence 9 46778999996 59999999999999887643
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=302.76 Aligned_cols=193 Identities=15% Similarity=0.192 Sum_probs=157.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|+++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~--~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~-- 70 (274)
T PRK13647 3 NIIEVEDLHFRYKDGT--KA---LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-----PQRGRVKVMGREVN-- 70 (274)
T ss_pred ceEEEEEEEEEeCCCC--ee---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEECC--
Confidence 3789999999996432 45 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......+..++|++|++. ++..++.+|+.++.... ..+....++++.++++.+++.+
T Consensus 71 -------------~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~------ 130 (274)
T PRK13647 71 -------------AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM-GLDKDEVERRVEEALKAVRMWD------ 130 (274)
T ss_pred -------------CCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHH------
Confidence 1112233456899999873 44458999998764321 2233345567888999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
++++++.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 131 -----------~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~ 199 (274)
T PRK13647 131 -----------FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199 (274)
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45899999999999999999999 999999753 789999999 4
Q ss_pred ccccccchhhHhhhhhhhcCCCCccc
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQ 320 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~ 320 (361)
.+.++|||++ +|++|++++.|++++
T Consensus 200 ~~~~~~d~i~-~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 200 LAAEWADQVI-VLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHH
Confidence 6678999996 599999999998854
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=331.06 Aligned_cols=226 Identities=12% Similarity=0.150 Sum_probs=179.1
Q ss_pred hhhhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhh
Q 018083 62 RRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 135 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~ 135 (361)
+....|+.++++.+++.... ..+.++++|++++|+++. .++ |+++||+|++|+.++|+||||||||||++
T Consensus 312 ~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~-~~i---l~~i~l~i~~G~~~aIvG~sGsGKSTLl~ 387 (582)
T PRK11176 312 MAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKE-VPA---LRNINFKIPAGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCCC-Ccc---ccCceEEeCCCCEEEEECCCCCCHHHHHH
Confidence 33445888887644331111 123599999999997542 245 66699999999999999999999999999
Q ss_pred hhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecC
Q 018083 136 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 215 (361)
Q Consensus 136 ~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~ 215 (361)
+|+|+++ |++|+|.++|.++. .+...+.+..++|++|++.+|+.|+.+||.++..
T Consensus 388 ll~gl~~-----p~~G~I~i~g~~i~---------------~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~----- 442 (582)
T PRK11176 388 LLTRFYD-----IDEGEILLDGHDLR---------------DYTLASLRNQVALVSQNVHLFNDTIANNIAYART----- 442 (582)
T ss_pred HHHhccC-----CCCceEEECCEEhh---------------hcCHHHHHhhceEEccCceeecchHHHHHhcCCC-----
Confidence 9999999 99999999999876 4555667788999999999999999999997532
Q ss_pred CChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--
Q 018083 216 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 284 (361)
Q Consensus 216 ~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-- 284 (361)
.....+++.++++.+++.+.+...++.+.+.+++ ....||||||||++||||| ||||++||+
T Consensus 443 -~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~------~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t 515 (582)
T PRK11176 443 -EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGE------NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_pred -CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCC------CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 1234567777888888876554444555554443 3457999999999999999 999999864
Q ss_pred -------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 -------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ....+.||+|+ +|++|++++.|++++++..
T Consensus 516 ~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii-~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIL-VVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE-EEECCEEEEeCCHHHHHhC
Confidence 799999999 56667899995 6999999999999998765
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=293.75 Aligned_cols=196 Identities=17% Similarity=0.219 Sum_probs=157.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~--- 66 (236)
T cd03219 1 LEVRGLTKRFGGL---VA---LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-----PTSGSVLFDGEDITG--- 66 (236)
T ss_pred CeeeeeEEEECCE---EE---ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEECCC---
Confidence 5689999999752 45 566999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecC---------CChhhhhhhcccccccCCC
Q 018083 166 LQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRS---------DSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~---------~~~~~~~~v~~~l~~~gl~ 234 (361)
..... .+..++|++|++.+++. ++.+|+.++....... ......+++.++++.+++.
T Consensus 67 ------------~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 134 (236)
T cd03219 67 ------------LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA 134 (236)
T ss_pred ------------CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc
Confidence 11111 12457888999888776 8999998764321110 1233455678889999997
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
+ .+++++.+||||||||++||||| ||||++||. ++|||
T Consensus 135 ~-----------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii 197 (236)
T cd03219 135 D-----------------LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVL 197 (236)
T ss_pred c-----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 7 45889999999999999999999 999999753 78999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
++|| +++..+||+++ +|++|+++..|++++++..+
T Consensus 198 ~vsH~~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~ 234 (236)
T cd03219 198 LVEHDMDVVMSLADRVT-VLDQGRVIAEGTPDEVRNNP 234 (236)
T ss_pred EEecCHHHHHHhCCEEE-EEeCCEEEeecCHHHhccCC
Confidence 9999 56778899996 59999999999988876543
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=294.54 Aligned_cols=198 Identities=13% Similarity=0.149 Sum_probs=161.0
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~-- 68 (241)
T PRK14250 2 NEIEFKEVSYSSFGK---EI---LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-----PTEGSILIDGVDIK-- 68 (241)
T ss_pred ceEEEEeEEEEeCCe---ee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhh--
Confidence 468999999999653 45 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.....+.+..+++++|++.+++.++.+|+.++.... ....+++.++++.+++...
T Consensus 69 -------------~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~l~~~~l~~~------- 123 (241)
T PRK14250 69 -------------TIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLK-----GEKNVDVEYYLSIVGLNKE------- 123 (241)
T ss_pred -------------hcChHHhhhcEEEEecCchhchhhHHHHHhcchhhc-----CcHHHHHHHHHHHcCCCHH-------
Confidence 111223345678899998888779999988654311 1123467778899999631
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
+.++.+.+||||||||++||||| |||+++||. |.|||++|| ++
T Consensus 124 ---------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~ 194 (241)
T PRK14250 124 ---------YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ 194 (241)
T ss_pred ---------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 35889999999999999999999 999999642 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
+..+||+++ +|++|+++..+++++++..+.+++
T Consensus 195 ~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~ 227 (241)
T PRK14250 195 AKRIGDYTA-FLNKGILVEYAKTYDFFTNPQNEV 227 (241)
T ss_pred HHHhCCEEE-EEeCCEEEEeCCHHHHhcCCCcHH
Confidence 778999996 599999999999999887665443
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=308.47 Aligned_cols=196 Identities=13% Similarity=0.075 Sum_probs=162.6
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++++++||+++|++. .+ |++|||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 5 ~~~i~i~~l~k~~~~~---~~---l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-----p~~G~v~i~G~~~~~ 73 (306)
T PRK13537 5 VAPIDFRNVEKRYGDK---LV---VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH-----PDAGSISLCGEPVPS 73 (306)
T ss_pred CceEEEEeEEEEECCe---EE---EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEeccc
Confidence 3579999999999752 56 555999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
. ....+..++|++|++.+++. ++.+|+.+.... ...+..+.++++.++++.+++.+
T Consensus 74 ---------------~-~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~------ 130 (306)
T PRK13537 74 ---------------R-ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY-FGLSAAAARALVPPLLEFAKLEN------ 130 (306)
T ss_pred ---------------c-hHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCch------
Confidence 0 11245678999999888765 899998753321 12233445567788899999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 131 -----------~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~ 199 (306)
T PRK13537 131 -----------KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME 199 (306)
T ss_pred -----------HhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 45889999999999999999999 999999753 899999999 6
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++..+||||+ +|++|+++..|+++++...
T Consensus 200 e~~~~~d~i~-il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 200 EAERLCDRLC-VIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHHHhc
Confidence 7889999996 5999999999999888654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=308.79 Aligned_cols=216 Identities=17% Similarity=0.181 Sum_probs=165.4
Q ss_pred hccccccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 82 IGSLTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
..++|+++|+++.|+... ...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|.+
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~---L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-----p~~G~I~i~g~~ 89 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVA---LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-----SKYGTIQVGDIY 89 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCEE
Confidence 446899999999997431 1246 666999999999999999999999999999999999 999999999987
Q ss_pred cCcceEeEeeeecCCC--cc-eeeeecCCCCcccccch--HHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCC
Q 018083 160 GDGTYFLQEYTIPRGS--NS-FSLYDTRSLSDDASDNI--NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~--~~-~~~~d~r~~i~~v~q~~--~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~ 234 (361)
+....... ...... .. ......+..+++|+|++ .++..++.+|+.++.... ..+..+..+++.++++.+++.
T Consensus 90 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 90 IGDKKNNH--ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVAL-GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred cccccccc--cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCC
Confidence 64100000 000000 00 01223456789999987 466669999998875321 223344556788899999996
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
.. ++++.+.+||||||||++||||| ||||++||. |+|||
T Consensus 167 ~~----------------~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~Tii 230 (320)
T PRK13631 167 DS----------------YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVF 230 (320)
T ss_pred hh----------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 31 35889999999999999999999 999999753 78999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
++|| +.+..+|||++ +|++|++++.|++++++..+
T Consensus 231 ivtHd~~~~~~~adri~-vl~~G~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 231 VITHTMEHVLEVADEVI-VMDKGKILKTGTPYEIFTDQ 267 (320)
T ss_pred EEecCHHHHHHhCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 9999 45778999996 59999999999999888764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=331.43 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=179.6
Q ss_pred hhhhHHHHHHHHhHHHHHhh-----hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhh
Q 018083 62 RRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 136 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~-----~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~ 136 (361)
+..+.|+.++++.+++.... ..+.++++|++++|+++. ++ |+|+||+|++||.++|+|+||||||||+++
T Consensus 312 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~--~i---l~~i~l~i~~Ge~iaIvG~SGsGKSTLl~l 386 (592)
T PRK10790 312 VVAGERVFELMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDN--LV---LQNINLSVPSRGFVALVGHTGSGKSTLASL 386 (592)
T ss_pred HHHHHHHHHHhcCCCccCCCCccCCCCCeEEEEEEEEEeCCCC--ce---eeceeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 34455888888644321111 123599999999997543 35 666999999999999999999999999999
Q ss_pred hhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCC
Q 018083 137 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 216 (361)
Q Consensus 137 I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~ 216 (361)
|+|+++ |++|+|.+||.++. .+.....+..+++|+|++.+|+.|+.+||.++.
T Consensus 387 L~gl~~-----p~~G~I~idg~~i~---------------~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~------- 439 (592)
T PRK10790 387 LMGYYP-----LTEGEIRLDGRPLS---------------SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR------- 439 (592)
T ss_pred HhcccC-----CCCceEEECCEEhh---------------hCCHHHHHhheEEEccCCccccchHHHHHHhCC-------
Confidence 999999 99999999999886 456667788999999999999999999999752
Q ss_pred ChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---
Q 018083 217 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 284 (361)
Q Consensus 217 ~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--- 284 (361)
...++++.++++.+|+.+.+.+.++.+.+.+++ ....||||||||++||||| ||||++||.
T Consensus 440 -~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e------~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~ 512 (592)
T PRK10790 440 -DISEEQVWQALETVQLAELARSLPDGLYTPLGE------QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTE 512 (592)
T ss_pred -CCCHHHHHHHHHHcCcHHHHHhccccccccccC------CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 123456788889999887554445555554433 4557999999999999999 999999763
Q ss_pred ------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ....+.||+|+ +|++|++++.|++++++..
T Consensus 513 ~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii-~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 513 QAIQQALAAVREHTTLVVIAHRLSTIVEADTIL-VLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE-EEECCEEEEEcCHHHHHhC
Confidence 799999999 55667799995 6999999999999998764
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=319.04 Aligned_cols=193 Identities=14% Similarity=0.225 Sum_probs=156.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeee-cCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYD-TRS 185 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d-~r~ 185 (361)
|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++... . ...+.. .+.
T Consensus 44 L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~-----p~sG~I~i~G~~i~~~--------~----~~~l~~~~~~ 106 (400)
T PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE-----PTRGQVLIDGVDIAKI--------S----DAELREVRRK 106 (400)
T ss_pred EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCCEEEECCEECCcC--------C----HHHHHHHHhC
Confidence 666999999999999999999999999999999999 9999999999887410 0 001111 134
Q ss_pred CCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhh
Q 018083 186 LSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 264 (361)
Q Consensus 186 ~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGG 264 (361)
.++|++|++.+++. ++.+|+.++.... ..+..+.++++.++++.++|.+ ++++++.+||||
T Consensus 107 ~igyv~Q~~~l~~~~Tv~enl~~~~~~~-~~~~~~~~~~~~e~L~~~gL~~-----------------~~~~~~~~LSgG 168 (400)
T PRK10070 107 KIAMVFQSFALMPHMTVLDNTAFGMELA-GINAEERREKALDALRQVGLEN-----------------YAHSYPDELSGG 168 (400)
T ss_pred CEEEEECCCcCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCh-----------------hhhcCcccCCHH
Confidence 68899999888876 9999998865422 2233445567888999999987 458999999999
Q ss_pred hhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--CccccccchhhHhhhhhhhcCCC
Q 018083 265 KQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 265 qrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g 316 (361)
||||++||||| ||||++||. ++|||++|| +++..+||+++ +|++|++++.|
T Consensus 169 q~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~-vL~~G~i~~~g 247 (400)
T PRK10070 169 MRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIA-IMQNGEVVQVG 247 (400)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEE-EEECCEEEecC
Confidence 99999999999 999999753 789999999 57788999996 59999999999
Q ss_pred CccccccCCCCCCCCchhh
Q 018083 317 PAKQIFDIPESSDPENELI 335 (361)
Q Consensus 317 ~~~~i~~~~~~~~~~~~~~ 335 (361)
++++++..|.+.+++.++.
T Consensus 248 ~~~~l~~~~~~~~v~~~~~ 266 (400)
T PRK10070 248 TPDEILNNPANDYVRTFFR 266 (400)
T ss_pred CHHHHHhCcccHHHHHHHh
Confidence 9999988776655544443
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=285.62 Aligned_cols=201 Identities=14% Similarity=0.170 Sum_probs=171.3
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++.|.++||.|+|+.+ +++++ |||+|++||+++|+|||||||||.+.++.|+.+ |++|+|.++|.+++.
T Consensus 2 ~~~L~a~~l~K~y~kr---~Vv~~---Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-----~d~G~i~ld~~diT~ 70 (243)
T COG1137 2 MSTLVAENLAKSYKKR---KVVND---VSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-----PDSGKILLDDEDITK 70 (243)
T ss_pred CcEEEehhhhHhhCCe---eeeee---eeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-----cCCceEEECCccccc
Confidence 4578999999999874 56455 999999999999999999999999999999999 999999999999972
Q ss_pred ceEeEeeeecCCCcceeee-ecCCCCcccccchHHHHH-HHHhccccceeEEecC-CChhhhhhhcccccccCCCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLY-DTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~-d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~-~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
...+ ..|.-++|.+|++..|.. +|.+||..-+...... ...+.+.++.++|+.+.+.+
T Consensus 71 ---------------lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h---- 131 (243)
T COG1137 71 ---------------LPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH---- 131 (243)
T ss_pred ---------------CChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH----
Confidence 2222 234468999999999988 9999999877654321 11234445779999999998
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH- 293 (361)
+.+++..+||||||+|+.||||| |||++|.|+ |..|++.-|
T Consensus 132 -------------lr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHN 198 (243)
T COG1137 132 -------------LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHN 198 (243)
T ss_pred -------------HhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEcccc
Confidence 66999999999999999999999 999999765 889999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
.+...+|||.++ +++|++++.|+++++.++|..
T Consensus 199 VREtL~i~dRaYI-i~~G~vla~G~p~ei~~n~~V 232 (243)
T COG1137 199 VRETLDICDRAYI-ISDGKVLAEGSPEEIVNNEDV 232 (243)
T ss_pred HHHHHhhhheEEE-EecCeEEecCCHHHHhcChhh
Confidence 688899999975 999999999999999988754
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=296.34 Aligned_cols=203 Identities=18% Similarity=0.219 Sum_probs=161.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~~---~i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~- 68 (240)
T PRK09493 1 MIEFKNVSKHFGPT---QV---LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-----ITSGDLIVDGLKVNDP- 68 (240)
T ss_pred CEEEEeEEEEECCe---EE---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcC-
Confidence 47899999999753 45 666999999999999999999999999999999999 9999999999876410
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..++|++|++.+++. ++.+|+.++.............+++.++++.+++.+
T Consensus 69 ------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------- 128 (240)
T PRK09493 69 ------------KVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-------- 128 (240)
T ss_pred ------------ChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH--------
Confidence 01111234467888998877765 888998765321112223344567788999999976
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 129 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 199 (240)
T PRK09493 129 ---------RAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFA 199 (240)
T ss_pred ---------HHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999753 789999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
..+||+++ +|++|+++..|+++++...+.+..
T Consensus 200 ~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~ 231 (240)
T PRK09493 200 EKVASRLI-FIDKGRIAEDGDPQVLIKNPPSQR 231 (240)
T ss_pred HHhCCEEE-EEECCEEEeeCCHHHHhcCCchHH
Confidence 78899996 599999999999988876655443
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=291.05 Aligned_cols=192 Identities=19% Similarity=0.216 Sum_probs=152.9
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh-----cccccccccceeeeccccc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF-----ENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~-----~~~~~~p~~G~I~i~G~~i 160 (361)
|+++|++++|+.. .+ |+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|+++
T Consensus 1 i~~~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~-----~~~G~i~~~g~~~ 69 (227)
T cd03260 1 IELRDLNVYYGDK---HA---LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-----PDEGEVLLDGKDI 69 (227)
T ss_pred CEEEEEEEEcCCc---ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC-----CCCeEEEECCEEh
Confidence 5789999999753 45 66699999999999999999999999999999999 8 9999999999876
Q ss_pred CcceEeEeeeecCCCccee--eeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 161 DGTYFLQEYTIPRGSNSFS--LYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~--~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.. .. ....+..++|++|++.++..++.+|+.++............++++.++++.+++.+
T Consensus 70 ~~---------------~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--- 131 (227)
T cd03260 70 YD---------------LDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD--- 131 (227)
T ss_pred hh---------------cchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh---
Confidence 41 11 12234567889999888755999999876432111111224567788899999986
Q ss_pred EEEEEEEEEEechhhhhhc--cCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSM--EGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~--~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiT 292 (361)
.+++. +.+||||||||++||||| ||||++||. .+|||++|
T Consensus 132 --------------~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~s 197 (227)
T cd03260 132 --------------EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVT 197 (227)
T ss_pred --------------HHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEe
Confidence 23555 599999999999999999 999999753 47999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
| +.+..+||+++ +|++|++++.|+++++
T Consensus 198 H~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 198 HNMQQAARVADRTA-FLLNGRLVEFGPTEQI 227 (227)
T ss_pred ccHHHHHHhCCEEE-EEeCCEEEEecCcccC
Confidence 9 46778999996 5999999999887654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=303.95 Aligned_cols=203 Identities=17% Similarity=0.189 Sum_probs=162.9
Q ss_pred ccccccceeeecCcce--eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~--~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
||+++|++++|+.+.. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~---l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 72 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRA---LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-----PTEGKVTVGDIVVSS 72 (288)
T ss_pred CEEEEEEEEEeCCCCcccccc---eeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEECcc
Confidence 5889999999974321 135 666999999999999999999999999999999999 999999999988641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccch--HHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.. ........+..+++|+|++ .++..++.+|+.++.... ..+..+.++++.++++.++|.+.
T Consensus 73 ~~-----------~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~---- 136 (288)
T PRK13643 73 TS-----------KQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADE---- 136 (288)
T ss_pred cc-----------ccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCChh----
Confidence 00 0012233456789999987 456669999998875422 22334556678888999999632
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
++++.+.+||||||||++||||| ||||++||. |.|||++||
T Consensus 137 ------------~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~ 204 (288)
T PRK13643 137 ------------FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204 (288)
T ss_pred ------------hccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 35889999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+++..+||||+ +|++|+++..|++++++..
T Consensus 205 ~~~~~~~dri~-~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 205 DDVADYADYVY-LLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHhCCEEE-EEECCEEEEECCHHHHHcC
Confidence 56778999996 5999999999999998764
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=289.57 Aligned_cols=188 Identities=15% Similarity=0.185 Sum_probs=149.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|+++. .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~~~~~~-~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~- 70 (216)
T TIGR00960 1 MIRFEQVSKAYPGGH-QPA---LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-----PTRGKIRFNGQDLTRL- 70 (216)
T ss_pred CeEEEEEEEEecCCC-eeE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEehhhc-
Confidence 478999999996432 135 666999999999999999999999999999999999 9999999999876410
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
. .......+..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 71 -------~----~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 130 (216)
T TIGR00960 71 -------R----GREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII-GVPPRDANERVSAALEKVGLEG-------- 130 (216)
T ss_pred -------C----hhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 0 00111234568899999888775 8999998764321 1222344567888999999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 131 ---------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~ 201 (216)
T TIGR00960 131 ---------KAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLV 201 (216)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999753 789999999 466
Q ss_pred ccccchhhHhhhhhhh
Q 018083 297 LSLTDRARIRTYLGEL 312 (361)
Q Consensus 297 ~~~aDri~vvl~~G~i 312 (361)
..+||+++ +|++|++
T Consensus 202 ~~~~d~i~-~l~~G~i 216 (216)
T TIGR00960 202 ETYRHRTL-TLSRGRL 216 (216)
T ss_pred HHhCCEEE-EEeCCcC
Confidence 78999996 5999875
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=297.59 Aligned_cols=219 Identities=17% Similarity=0.191 Sum_probs=166.3
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|+++|+++.
T Consensus 4 ~~~~l~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 4 NEAIIETENLNLFYTDF---KA---LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CCceEEEeeeEEEeCCc---ee---ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 34589999999999753 45 6669999999999999999999999999999999981100025899999998763
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.++..++.+|+.++............++++.++++.+++.+.+
T Consensus 78 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---- 140 (254)
T PRK14273 78 SN-------------NFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---- 140 (254)
T ss_pred cc-------------cccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh----
Confidence 10 0111233556889999987776689999987643211112233456677788888874211
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++.+.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 141 ---------~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~ 211 (254)
T PRK14273 141 ---------KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQ 211 (254)
T ss_pred ---------HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 0135888999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
+..+|||++ +|++|+++..|++++++..|.+++++.+
T Consensus 212 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 248 (254)
T PRK14273 212 AGRISDRTA-FFLNGCIEEESSTDELFFNPKNTKTEEY 248 (254)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHhCCCChHHHHh
Confidence 678999996 5999999999999999888877665443
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=318.22 Aligned_cols=223 Identities=15% Similarity=0.102 Sum_probs=181.5
Q ss_pred hhhhHHHHHHHHhHHHHHhh-------hccccc--cccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcch
Q 018083 62 RRRDAVFREVLQSYDQLRTR-------IGSLTD--AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 132 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~-------~~~~le--i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKST 132 (361)
-+++.++..+++++.+.... ..+-++ ++|+++.|++++ ++ ++++||++++|+.++|||+|||||||
T Consensus 288 ~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~--~~---l~~l~~t~~~g~~talvG~SGaGKST 362 (559)
T COG4988 288 EAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PA---LSDLNLTIKAGQLTALVGASGAGKST 362 (559)
T ss_pred hhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC--cc---cCCceeEecCCcEEEEECCCCCCHHH
Confidence 33444777777766542211 222344 559999998774 56 55599999999999999999999999
Q ss_pred hhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEE
Q 018083 133 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 212 (361)
Q Consensus 133 Ll~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~ 212 (361)
|+++|+|+++ |++|+|.+||.++. +....++++.+.+|+|++.+|+.|+++||.++..
T Consensus 363 Ll~lL~G~~~-----~~~G~I~vng~~l~---------------~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~-- 420 (559)
T COG4988 363 LLNLLLGFLA-----PTQGEIRVNGIDLR---------------DLSPEAWRKQISWVSQNPYLFAGTIRENILLARP-- 420 (559)
T ss_pred HHHHHhCcCC-----CCCceEEECCcccc---------------ccCHHHHHhHeeeeCCCCccccccHHHHhhccCC--
Confidence 9999999999 99999999999886 4566678899999999999999999999997544
Q ss_pred ecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec
Q 018083 213 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 283 (361)
Q Consensus 213 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~ 283 (361)
+..++++.++++.+++.+.+.. +.++.+++ .+....|||||+||+++|||| ||||++||
T Consensus 421 -----~~s~e~i~~al~~a~l~~~v~~-p~GLdt~i------ge~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD 488 (559)
T COG4988 421 -----DASDEEIIAALDQAGLLEFVPK-PDGLDTVI------GEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLD 488 (559)
T ss_pred -----cCCHHHHHHHHHHhcHHHhhcC-CCcccchh------ccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCC
Confidence 4556788889999999886543 45555533 345667999999999999999 99999976
Q ss_pred C---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 284 D---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 284 ~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
. ++|+|+||| ...+.-||+|+ +|++|++++.|.++++...
T Consensus 489 ~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~-vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 489 AETEQIILQALQELAKQKTVLVITHRLEDAADADRIV-VLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEE-EecCCceeccCCHHHHhhc
Confidence 2 899999999 56667799995 6999999999999998764
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=315.48 Aligned_cols=199 Identities=15% Similarity=0.185 Sum_probs=176.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.|+++|++++|+++. ++ |+++||+|++||.+||+|+|||||||++|+|.++++ .+|+|.+||++++
T Consensus 351 ~I~F~dV~f~y~~k~--~i---L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d------~sG~I~IdG~dik--- 416 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKR--KV---LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD------YSGSILIDGQDIK--- 416 (591)
T ss_pred cEEEEeeEEEeCCCC--ce---ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc------cCCcEEECCeeHh---
Confidence 599999999999874 46 455999999999999999999999999999999998 6899999999997
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+....+|+.+++|||+.-+|..||..||.+|-+ +...+++.++++.+++++-+.+.++.|
T Consensus 417 ------------~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~-------sas~eeV~e~~k~a~~hd~i~~l~~GY 477 (591)
T KOG0057|consen 417 ------------EVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP-------SASDEEVVEACKRAGLHDVISRLPDGY 477 (591)
T ss_pred ------------hhChHHhhhheeEeCCcccccchhHHHHhhcCCC-------CcCHHHHHHHHHHcCcHHHHHhccccc
Confidence 5677788999999999999999999999998765 455678889999999999877777777
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Cccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 299 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~~~ 299 (361)
-+.|.+ +...||||||||++||||+ |||||+||. ++|+|+|-| .+...-
T Consensus 478 ~T~VGe------rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~ 551 (591)
T KOG0057|consen 478 QTLVGE------RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD 551 (591)
T ss_pred hhhHhh------cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc
Confidence 775544 4557999999999999998 999999863 899999999 577788
Q ss_pred cchhhHhhhhhhhcCCCCcccccc
Q 018083 300 TDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
||+|+ ++++|++.+.|++++++.
T Consensus 552 ~DkI~-~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 552 FDKII-VLDNGTVKEYGTHSELLA 574 (591)
T ss_pred CCEEE-EEECCeeEEeccHHHHhh
Confidence 99995 699999999999999988
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=306.15 Aligned_cols=215 Identities=13% Similarity=0.175 Sum_probs=164.6
Q ss_pred ccccccceeeecCcce--eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~--~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+|+++|++++|+++.. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.+...
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~---l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~~~~ 73 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKA---LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL-----PDTGTIEWIFKDEKN 73 (305)
T ss_pred EEEEEEEEEEECCCCCccccc---eeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeccc
Confidence 4889999999975321 135 666999999999999999999999999999999999 999999999876521
Q ss_pred ceE-------eEeeeecCCC--cceeeeecCCCCcccccch--HHHHHHHHhccccceeEEecCCChhhhhhhccccccc
Q 018083 163 TYF-------LQEYTIPRGS--NSFSLYDTRSLSDDASDNI--NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 163 ~~~-------~~~~~i~~~~--~~~~~~d~r~~i~~v~q~~--~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~ 231 (361)
... .....+.... ........+..++||||++ .++..++.+|+.++.... ..+.++..+++.++++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 74 KKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM-GVSKEEAKKRAAKYIELV 152 (305)
T ss_pred ccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHc
Confidence 000 0000000000 0011223456789999986 455569999999875422 233455667888999999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------Cc
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DK 286 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~ 286 (361)
+|... ++++++.+||||||||++||||| ||||++||. |+
T Consensus 153 gL~~~----------------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 216 (305)
T PRK13651 153 GLDES----------------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK 216 (305)
T ss_pred CCChh----------------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 99631 45899999999999999999999 999999753 89
Q ss_pred cEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 287 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
|||+||| +.+..+|||++ +|++|++++.|++++++..+
T Consensus 217 tiiivtHd~~~~~~~adrv~-vl~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 217 TIILVTHDLDNVLEWTKRTI-FFKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred EEEEEeeCHHHHHHhCCEEE-EEECCEEEEECCHHHHhcCH
Confidence 9999999 46789999996 59999999999999988764
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=292.78 Aligned_cols=201 Identities=15% Similarity=0.161 Sum_probs=158.6
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+|+++|++++|++.. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 72 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTA---LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-----PTSGSVLVDGTDLTLL 72 (233)
T ss_pred CeEEecceEEccCCCCceee---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccC
Confidence 478999999997531 0145 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. .......+..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 73 --------~----~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 132 (233)
T cd03258 73 --------S----GKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA-GVPKAEIEERVLELLELVGLED------- 132 (233)
T ss_pred --------C----HHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChh-------
Confidence 0 00111224567889999888775 8899987654311 1222334567788899999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
.+++.+.+||||||||++||||| |||+++||. |+|||++|| +
T Consensus 133 ----------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 202 (233)
T cd03258 133 ----------KADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME 202 (233)
T ss_pred ----------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45889999999999999999999 999999653 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
.+..+||+++ +|++|++++.+++++++..
T Consensus 203 ~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 203 VVKRICDRVA-VMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HHHHhCCEEE-EEECCEEEEecCHHHHhcC
Confidence 6778999996 5999999999988777653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=303.98 Aligned_cols=196 Identities=12% Similarity=0.126 Sum_probs=164.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
..++++||++.|+.. ..+ |++|||+|++|+++||+||||||||||+|+|+|+.. |++|+|.++|.+...
T Consensus 3 ~~i~~~~l~k~~~~~--~~~---l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-----p~~G~i~i~G~~~~~- 71 (293)
T COG1131 3 EVIEVRNLTKKYGGD--KTA---LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-----PTSGEILVLGYDVVK- 71 (293)
T ss_pred ceeeecceEEEeCCC--CEE---EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEEcCEeCcc-
Confidence 357889999999832 256 555999999999999999999999999999999999 999999999988751
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.....+..++|++|++.+++. |+.+++.+....... .....++++.++++.++|.+.
T Consensus 72 ---------------~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~------ 129 (293)
T COG1131 72 ---------------EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL-SKEEAEERIEELLELFGLEDK------ 129 (293)
T ss_pred ---------------CHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHcCCchh------
Confidence 123456678999999998877 999999885543322 114456789999999999872
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------C-ccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g-~tvIiiTH--~ 294 (361)
.++++.+||+|||||++||+|| ||||+|||+ | +|||++|| +
T Consensus 130 -----------~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~ 198 (293)
T COG1131 130 -----------ANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE 198 (293)
T ss_pred -----------hCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH
Confidence 3788999999999999999999 999999875 5 89999999 7
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++..+||||+ +|++|+++..|+++++...
T Consensus 199 e~~~~~d~v~-il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 199 EAEELCDRVI-ILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHHHhCCEEE-EEeCCEEEEeCCHHHHHHh
Confidence 8888899996 5999999999988876543
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=308.83 Aligned_cols=201 Identities=16% Similarity=0.223 Sum_probs=165.2
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
||++ ||+++|++. . + ++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~l~~-~l~k~~~~~--~-----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~~~~~~ 66 (352)
T PRK11144 1 MLEL-NFKQQLGDL--C-----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-----PQKGRIVLNGRVLFDAE 66 (352)
T ss_pred CeEE-EEEEEeCCE--E-----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccc
Confidence 4777 999999752 1 2 5999999999999999999999999999999999 99999999998764100
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
........+..++|++|++.+++. ++.+|+.++.. ....+++.++++.+++.+
T Consensus 67 -----------~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~-------- 120 (352)
T PRK11144 67 -----------KGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEP-------- 120 (352)
T ss_pred -----------cccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCch--------
Confidence 001122334578999999988886 99999987643 123456788899999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
++++++.+||||||||++||||| ||||++||. ++|+|+||| ++
T Consensus 121 ---------~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~ 191 (352)
T PRK11144 121 ---------LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDE 191 (352)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence 45899999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+..+||+++ +|++|++++.|++++++..|...++..++.
T Consensus 192 ~~~~~d~i~-~l~~G~i~~~g~~~~i~~~p~~~~~~~~~g 230 (352)
T PRK11144 192 ILRLADRVV-VLEQGKVKAFGPLEEVWASSAMRPWLPKEE 230 (352)
T ss_pred HHHhCCEEE-EEeCCEEEEecCHHHHHhCcchhhhhcccC
Confidence 789999996 599999999999999999988666555554
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=299.04 Aligned_cols=203 Identities=16% Similarity=0.192 Sum_probs=160.6
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 4 ~~~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~ 72 (269)
T PRK11831 4 VANLVDMRGVSFTRGNR---CI---FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-----PDHGEILFDGENIP 72 (269)
T ss_pred ccceEEEeCeEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcc
Confidence 34579999999999653 45 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
... .......+..+++++|++.+++. ++.+|+.++.......+.....+++.++++.+++.+
T Consensus 73 ~~~------------~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----- 135 (269)
T PRK11831 73 AMS------------RSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG----- 135 (269)
T ss_pred ccC------------hhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-----
Confidence 100 00111224457888998877775 888998765321111122333456777899999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 136 ------------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 203 (269)
T PRK11831 136 ------------AAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203 (269)
T ss_pred ------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 45889999999999999999999 999999753 689999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+++..+||+++ +|++|+++..|++++++..+
T Consensus 204 ~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~ 235 (269)
T PRK11831 204 VPEVLSIADHAY-IVADKKIVAHGSAQALQANP 235 (269)
T ss_pred HHHHHHhhCEEE-EEECCEEEEeCCHHHHhcCC
Confidence 46778999996 59999999999998887654
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=302.01 Aligned_cols=203 Identities=15% Similarity=0.154 Sum_probs=162.0
Q ss_pred cccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 86 TDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 86 lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
|+++|++++|++.. ..++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~---L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~ 74 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRA---LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-----PTSGTVTIGERVITAG 74 (290)
T ss_pred EEEEEEEEEECCCCcccccc---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 78999999996421 0246 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccch--HHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++ .++..++.+|+.++.... ..+....++++.++++.++|.+.
T Consensus 75 ~~-----------~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~----- 137 (290)
T PRK13634 75 KK-----------NKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF-GVSEEDAKQKAREMIELVGLPEE----- 137 (290)
T ss_pred cc-----------cchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCChh-----
Confidence 00 011223455688999986 456669999998765421 22334455678889999999732
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
++++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 138 -----------~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~ 206 (290)
T PRK13634 138 -----------LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM 206 (290)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 35889999999999999999999 999999653 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+..+|||++ +|++|+++..|++++++..+
T Consensus 207 ~~~~~~~drv~-~l~~G~i~~~g~~~~~~~~~ 237 (290)
T PRK13634 207 EDAARYADQIV-VMHKGTVFLQGTPREIFADP 237 (290)
T ss_pred HHHHHhCCEEE-EEECCEEEEECCHHHHhcCH
Confidence 56778999996 59999999999998887654
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=291.69 Aligned_cols=197 Identities=18% Similarity=0.218 Sum_probs=155.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|+.+ .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~--~~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 68 (243)
T TIGR02315 1 MLEVENLSKVYPNG--KQA---LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-----PSSGSILLEGTDITK-- 68 (243)
T ss_pred CeEEEeeeeecCCC--cce---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCccEEEECCEEhhh--
Confidence 47899999999722 245 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe-------cCCChhhhhhhcccccccCCCcc
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-------RSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~-------~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
.. .......+..+++++|++.+++. ++.+|+.++..... .......++++.++++.+++..
T Consensus 69 ------~~----~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~- 137 (243)
T TIGR02315 69 ------LR----GKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD- 137 (243)
T ss_pred ------CC----HHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-
Confidence 00 00111234568899999887775 89999986542110 0112334567788899999976
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 290 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIi 290 (361)
.+++++.+||||||||++||||| ||||++||. ++|||+
T Consensus 138 ----------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 201 (243)
T TIGR02315 138 ----------------KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVII 201 (243)
T ss_pred ----------------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 45889999999999999999999 999999753 789999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
+|| +.+..+||+++ +|++|++++.|+++++
T Consensus 202 ~tH~~~~~~~~~d~v~-~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 202 NLHQVDLAKKYADRIV-GLKAGEIVFDGAPSEL 233 (243)
T ss_pred EeCCHHHHHHhcCeEE-EEECCEEEecCCHHHh
Confidence 999 56678999996 5999999999988765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=300.54 Aligned_cols=199 Identities=17% Similarity=0.214 Sum_probs=161.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|++.....+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~-- 72 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYT---LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-----AESGQIIIDGDLLT-- 72 (279)
T ss_pred ceEEEEeEEEEcCCCCcCee---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECC--
Confidence 36899999999964221246 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH-HHH-HHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......+..++|++|++. .+. .++.+|+.++.... ..++.+..+++.++++.+++.+
T Consensus 73 -------------~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------ 132 (279)
T PRK13650 73 -------------EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK-GIPHEEMKERVNEALELVGMQD------ 132 (279)
T ss_pred -------------cCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCCHh------
Confidence 1122234567899999974 443 49999998764321 2334455677888999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
.+++.+.+||||||||++||||| ||||++||. |+|||++||
T Consensus 133 -----------~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~ 201 (279)
T PRK13650 133 -----------FKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL 201 (279)
T ss_pred -----------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 45899999999999999999999 999999642 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+ .+|||++ +|++|+++..|++++++..+
T Consensus 202 ~~~-~~~dri~-~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 202 DEV-ALSDRVL-VMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHH-HhCCEEE-EEECCEEEEECCHHHHHcCh
Confidence 455 5799995 59999999999999887764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-38 Score=291.25 Aligned_cols=196 Identities=18% Similarity=0.185 Sum_probs=154.8
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~~--~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~-- 68 (241)
T cd03256 1 IEVENLSKTYPNGK--KA---LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-----PTSGSVLIDGTDINKL-- 68 (241)
T ss_pred CEEeeEEEecCCcc--EE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEecccc--
Confidence 46899999997522 35 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEE-------ecCCChhhhhhhcccccccCCCcce
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVI-------RRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~-------~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
. .......+..+++++|++.+++. ++.+|+.++.... .........+++.++++.+++.+
T Consensus 69 ------~----~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 136 (241)
T cd03256 69 ------K----GKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-- 136 (241)
T ss_pred ------C----HhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh--
Confidence 0 00012234568889999887775 8999997654211 01112334566778899999976
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 291 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIii 291 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++
T Consensus 137 ---------------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 201 (241)
T cd03256 137 ---------------KAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVS 201 (241)
T ss_pred ---------------hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45889999999999999999999 999999653 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
|| +.+..+||+++ +|++|++++.|+++++
T Consensus 202 tH~~~~~~~~~d~v~-~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 202 LHQVDLAREYADRIV-GLKDGRIVFDGPPAEL 232 (241)
T ss_pred eCCHHHHHHhCCEEE-EEECCEEEeecCHHHh
Confidence 99 56777999996 5999999999888765
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=296.52 Aligned_cols=216 Identities=15% Similarity=0.160 Sum_probs=163.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++||++.|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.....
T Consensus 1 i~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~~ 69 (252)
T TIGR03005 1 VRFSDVTKRFGIL---TV---LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-----IDEGQIQVEGEQLYHMPG 69 (252)
T ss_pred CEEEEEEEEeCCe---eE---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccccc
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999987631000
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+....+. ........+..+++++|++.+++. ++.+|+.++.............+++.++++.+++.+
T Consensus 70 ~~~~~~~~--~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--------- 138 (252)
T TIGR03005 70 RNGPLVPA--DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD--------- 138 (252)
T ss_pred cccccccc--chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh---------
Confidence 00000000 000112234568889999887764 889999865321111223344566788899999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++.+.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 139 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~ 210 (252)
T TIGR03005 139 --------KADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFA 210 (252)
T ss_pred --------HhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 45889999999999999999999 999999642 789999999 466
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
..+|||++ +|++|++++.|++++++..+.++++..
T Consensus 211 ~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~ 245 (252)
T TIGR03005 211 REFADRVC-FFDKGRIVEQGKPDEIFRQPKEERTRE 245 (252)
T ss_pred HHhcCEEE-EEECCEEEEeCCHHHHhcCCCcHHHHH
Confidence 78999996 599999999999999987776655433
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=313.97 Aligned_cols=198 Identities=14% Similarity=0.148 Sum_probs=163.5
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++||++.|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 2 ~~L~~~nls~~y~~~---~v---L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-----p~sG~I~l~G~~i~-- 68 (402)
T PRK09536 2 PMIDVSDLSVEFGDT---TV---LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-----PTAGTVLVAGDDVE-- 68 (402)
T ss_pred ceEEEeeEEEEECCE---EE---EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEEcC--
Confidence 579999999999753 45 666999999999999999999999999999999999 99999999998765
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe-cC--CChhhhhhhcccccccCCCcceeE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-RS--DSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~-~~--~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
.....+.++.+++++|++.++.. ++.+|+.++...+. .. .....++++.++++.+++.+
T Consensus 69 -------------~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~---- 131 (402)
T PRK09536 69 -------------ALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ---- 131 (402)
T ss_pred -------------cCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCch----
Confidence 12223345668899998876544 88899987643211 11 12345677889999999987
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 132 -------------~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHd 198 (402)
T PRK09536 132 -------------FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHD 198 (402)
T ss_pred -------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 45899999999999999999999 999999753 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+++.++|||++ +|++|+++..|++++++..+
T Consensus 199 l~~~~~~adrii-~l~~G~iv~~G~~~ev~~~~ 230 (402)
T PRK09536 199 LDLAARYCDELV-LLADGRVRAAGPPADVLTAD 230 (402)
T ss_pred HHHHHHhCCEEE-EEECCEEEEecCHHHHhCcH
Confidence 67889999996 59999999999999876653
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=313.08 Aligned_cols=222 Identities=13% Similarity=0.167 Sum_probs=179.8
Q ss_pred hHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhh
Q 018083 65 DAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 65 ~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~ 138 (361)
..|+.+++..+++...+ ..-.++++||+|+|++.. .++ |+|+||++++||.+||+|+||||||||+++|.
T Consensus 310 a~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~-~~~---L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~ 385 (573)
T COG4987 310 ARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQ-TKA---LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLA 385 (573)
T ss_pred HHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCc-cch---hhccceeecCCCeEEEECCCCCCHHHHHHHHH
Confidence 44899998877664322 111689999999998754 367 55599999999999999999999999999999
Q ss_pred hhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCCh
Q 018083 139 KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSS 218 (361)
Q Consensus 139 gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~ 218 (361)
|.++ |++|+|.++|.++. .+.-++.+..++++.|.+.+|..|+++|+.++-+ .
T Consensus 386 ~~~~-----~~~G~i~~~g~~~~---------------~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~-------~ 438 (573)
T COG4987 386 GAWD-----PQQGSITLNGVEIA---------------SLDEQALRETISVLTQRVHLFSGTLRDNLRLANP-------D 438 (573)
T ss_pred hccC-----CCCCeeeECCcChh---------------hCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC-------C
Confidence 9999 99999999999886 4455567778899999999999999999986543 4
Q ss_pred hhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----
Q 018083 219 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----- 284 (361)
Q Consensus 219 ~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----- 284 (361)
...+++.++++++|+.+.+...++.+-. .++.-...||||||||++|||+| ||||.|||+
T Consensus 439 AsDEel~~aL~qvgL~~l~~~~p~gl~t------~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~ 512 (573)
T COG4987 439 ASDEELWAALQQVGLEKLLESAPDGLNT------WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQ 512 (573)
T ss_pred CCHHHHHHHHHHcCHHHHHHhChhhhhc------hhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHH
Confidence 5567788899999988743221222222 23445567999999999999998 999999875
Q ss_pred ----------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ----------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|+|+||||| -.-.+.||||+ ||++|+++++|++.+++.+
T Consensus 513 vL~ll~~~~~~kTll~vTHrL~~le~~drIi-vl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 513 VLALLFEHAEGKTLLMVTHRLRGLERMDRII-VLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred HHHHHHHHhcCCeEEEEecccccHhhcCEEE-EEECCeeeecCCHHhhhcc
Confidence 999999999 44557899995 6999999999999998873
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=293.51 Aligned_cols=199 Identities=19% Similarity=0.282 Sum_probs=159.3
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|++++|++.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~--~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~---- 66 (242)
T cd03295 1 IEFENVTKRYGGGK--KA---VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-----PTSGEIFIDGEDIR---- 66 (242)
T ss_pred CEEEEEEEEeCCcc--eE---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCeEcC----
Confidence 46899999997521 35 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCc-ceeEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP-SVIRKVNF 243 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~-~~~~~~~~ 243 (361)
.......+..++|++|++.+++. ++.+|+.++.... ..+.....+++.++++.+++.+ .
T Consensus 67 -----------~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~------- 127 (242)
T cd03295 67 -----------EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL-KWPKEKIRERADELLALVGLDPAE------- 127 (242)
T ss_pred -----------cCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcHH-------
Confidence 11112234567889999888865 8999998653211 1222344567788899999974 1
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
+.++++.+||||||||++||||| ||||++||. |+|||++|| .+
T Consensus 128 ---------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~ 198 (242)
T cd03295 128 ---------FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE 198 (242)
T ss_pred ---------HHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 34888999999999999999999 999999642 789999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
+..+||+++ +|++|++++.|+++++...+.+
T Consensus 199 ~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~ 229 (242)
T cd03295 199 AFRLADRIA-IMKNGEIVQVGTPDEILRSPAN 229 (242)
T ss_pred HHHhCCEEE-EEECCEEEEecCHHHHHcCCCC
Confidence 778999996 5999999999998887665443
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=300.15 Aligned_cols=203 Identities=13% Similarity=0.174 Sum_probs=161.8
Q ss_pred cccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 86 TDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 86 lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++++||+++|+++. ..++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~i~~~ 74 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQA---IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-----PTTGTVTVDDITITHK 74 (286)
T ss_pred EEEEEEEEEECCCCccccCc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 78999999996421 0235 666999999999999999999999999999999999 9999999999877410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
. ........+..++++||++. +++.++.+|+.++.... ..+.....+++.++++.+||...
T Consensus 75 ~-----------~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~----- 137 (286)
T PRK13646 75 T-----------KDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNF-KMNLDEVKNYAHRLLMDLGFSRD----- 137 (286)
T ss_pred c-----------ccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChh-----
Confidence 0 00112234567899999873 56669999998764321 22334556678889999999721
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
+.++.+.+||||||||++||||| ||||++||. |+|||++||
T Consensus 138 -----------~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~ 206 (286)
T PRK13646 138 -----------VMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM 206 (286)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 34789999999999999999999 999999653 799999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+..+|||++ +|++|+++..|++++++..+
T Consensus 207 ~~~~~~~dri~-~l~~G~i~~~g~~~~~~~~~ 237 (286)
T PRK13646 207 NEVARYADEVI-VMKEGSIVSQTSPKELFKDK 237 (286)
T ss_pred HHHHHhCCEEE-EEECCEEEEECCHHHHHhCH
Confidence 46778999996 59999999999998887653
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=298.77 Aligned_cols=198 Identities=16% Similarity=0.277 Sum_probs=160.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+++++|++++|++.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 2 ~~l~~~~l~~~~~~~~--~~---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~- 70 (277)
T PRK13652 2 HLIETRDLCYSYSGSK--EA---LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-----PTSGSVLIRGEPITK- 70 (277)
T ss_pred ceEEEEEEEEEeCCCC--ce---eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCc-
Confidence 5789999999996432 35 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
......+..+++++|++. ++..++.+|+.++.... ..+.....+++.++++.+++.+
T Consensus 71 --------------~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------ 129 (277)
T PRK13652 71 --------------ENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL-GLDEETVAHRVSSALHMLGLEE------ 129 (277)
T ss_pred --------------CCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChh------
Confidence 111233456788999863 44458889987654311 2233444567788999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
.+++.+.+||||||||++||||| ||||++||. +.|||++||
T Consensus 130 -----------~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~ 198 (277)
T PRK13652 130 -----------LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL 198 (277)
T ss_pred -----------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 45889999999999999999999 999999652 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+++..+|||++ +|++|+++..|++++++..+
T Consensus 199 ~~~~~~~drv~-~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 199 DLVPEMADYIY-VMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHHHhCCEEE-EEECCeEEEECCHHHHhcCH
Confidence 56778999996 59999999999999887653
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=284.80 Aligned_cols=184 Identities=18% Similarity=0.240 Sum_probs=149.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~--- 66 (213)
T cd03259 1 LELKGLSKTYGSV---RA---LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-----PDSGEILIDGRDVTG--- 66 (213)
T ss_pred CeeeeeEEEeCCe---ee---ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcCc---
Confidence 5789999999752 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.. ..+..+++++|++.+++. ++.+|+.++.... .......++++.++++.+++.+
T Consensus 67 ------------~~--~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (213)
T cd03259 67 ------------VP--PERRNIGMVFQDYALFPHLTVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEG--------- 122 (213)
T ss_pred ------------Cc--hhhccEEEEcCchhhccCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 01 113457889999887765 8899988654311 1122344566788899999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +++
T Consensus 123 --------~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 194 (213)
T cd03259 123 --------LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEA 194 (213)
T ss_pred --------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 45889999999999999999999 999999652 789999999 467
Q ss_pred ccccchhhHhhhhhhhcCCC
Q 018083 297 LSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g 316 (361)
..+||+++ +|++|++++.|
T Consensus 195 ~~~~d~v~-~l~~G~i~~~g 213 (213)
T cd03259 195 LALADRIA-VMNEGRIVQVG 213 (213)
T ss_pred HHhcCEEE-EEECCEEEecC
Confidence 78999996 59999987654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=290.65 Aligned_cols=197 Identities=14% Similarity=0.156 Sum_probs=159.5
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+++++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~- 69 (241)
T PRK10895 2 ATLTAKNLAKAYKGR---RV---VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-----RDAGNIIIDDEDISL- 69 (241)
T ss_pred ceEEEeCcEEEeCCE---EE---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC-
Confidence 478999999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
..... .+..+++++|++.+++. ++.+|+.+........+....++++.++++.+++.+
T Consensus 70 --------------~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 129 (241)
T PRK10895 70 --------------LPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH------ 129 (241)
T ss_pred --------------CCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH------
Confidence 11111 23467889999877775 899998865432111222344566788899999976
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
.+++.+.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 130 -----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 198 (241)
T PRK10895 130 -----------LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR 198 (241)
T ss_pred -----------HhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 45888999999999999999999 999999753 889999999 4
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
.+..+||+++ +|++|++++.|++++++..
T Consensus 199 ~~~~~~d~v~-~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 199 ETLAVCERAY-IVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHHhcCEEE-EEeCCeEEeeCCHHHHhcC
Confidence 6789999996 5999999999998887653
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=294.59 Aligned_cols=216 Identities=18% Similarity=0.191 Sum_probs=164.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..|+|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++.....|++|+|.++|+++.
T Consensus 3 ~~~~l~~~~l~~~~~~~---~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 76 (253)
T PRK14242 3 SPPKMEARGLSFFYGDF---QA---LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76 (253)
T ss_pred CCcEEEEeeeEEEECCe---ee---ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence 34689999999999753 45 6669999999999999999999999999999999631100147999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++............++++.++++.+++.+.+
T Consensus 77 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---- 139 (253)
T PRK14242 77 DP-------------HVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV---- 139 (253)
T ss_pred cc-------------ccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh----
Confidence 10 0111233456888999887776688999987643211111233456777888888885421
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++.+.+||||||||++||||| ||||++||. ++|||++|| +.
T Consensus 140 ---------~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~ 210 (253)
T PRK14242 140 ---------KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQ 210 (253)
T ss_pred ---------hHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHH
Confidence 0135788999999999999999999 999999753 789999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
+..+||+++ +|++|++++.|++++++..+.+..+
T Consensus 211 ~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~~ 244 (253)
T PRK14242 211 AARVSDVTA-FFYMGKLIEVGPTEQIFTRPREKQT 244 (253)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHcCCCchHH
Confidence 778999996 5999999999999988877665544
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=293.63 Aligned_cols=210 Identities=21% Similarity=0.257 Sum_probs=161.6
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
|++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|++++....|++|+|.++|.++.
T Consensus 1 ~~~l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~- 73 (250)
T PRK14247 1 MNKIEIRDLKVSFGQV---EV---LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF- 73 (250)
T ss_pred CceEEEEeeEEEECCe---ee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECC-
Confidence 3579999999999753 45 6669999999999999999999999999999999972100136999999998764
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec-CCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~-~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.......+..++|++|++.+++. ++.+|+.++...... ....+..+++.++++.+++.+.+.
T Consensus 74 --------------~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-- 137 (250)
T PRK14247 74 --------------KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-- 137 (250)
T ss_pred --------------cCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh--
Confidence 11122334568889999876654 899999875431111 122344567788899999864210
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--C
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 294 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~ 294 (361)
..+++.+.+||||||||++||||| ||||++||. +.|+|++|| +
T Consensus 138 -----------~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~ 206 (250)
T PRK14247 138 -----------DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQ 206 (250)
T ss_pred -----------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 035888999999999999999999 999999753 789999999 4
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
.+..+||+++ +|++|++++.|++++++..+.+
T Consensus 207 ~~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~ 238 (250)
T PRK14247 207 QAARISDYVA-FLYKGQIVEWGPTREVFTNPRH 238 (250)
T ss_pred HHHHhcCEEE-EEECCeEEEECCHHHHHcCCcc
Confidence 5678999996 5999999999999988776543
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=287.55 Aligned_cols=189 Identities=13% Similarity=0.148 Sum_probs=153.1
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~~~~~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~--- 66 (220)
T cd03265 1 IEVENLVKKYGDF---EA---VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-----PTSGRATVAGHDVVR--- 66 (220)
T ss_pred CEEEEEEEEECCE---Ee---eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEecCc---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999976541
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
...+.+..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 67 -------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 123 (220)
T cd03265 67 -------------EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY-GVPGAERRERIDELLDFVGLLE--------- 123 (220)
T ss_pred -------------ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHH---------
Confidence 001224457888998877765 8889987653211 1222344567888999999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 124 --------~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~ 195 (220)
T cd03265 124 --------AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEA 195 (220)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999653 789999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCccc
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQ 320 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~ 320 (361)
..+|||++ +|++|+++..+++++
T Consensus 196 ~~~~d~i~-~l~~G~i~~~~~~~~ 218 (220)
T cd03265 196 EQLCDRVA-IIDHGRIIAEGTPEE 218 (220)
T ss_pred HHhCCEEE-EEeCCEEEEeCChHH
Confidence 78999996 599999998887654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=287.14 Aligned_cols=192 Identities=14% Similarity=0.122 Sum_probs=153.8
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|+++. .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~~-~~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~--- 68 (220)
T cd03263 1 LQIRNLTKTYKKGT-KPA---VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-----PTSGTAYINGYSIRT--- 68 (220)
T ss_pred CEEEeeEEEeCCCC-cee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEeccc---
Confidence 57899999997521 145 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. ....+..+++++|++.+++. ++.+|+.+..... ..+.....+++.++++.+++.+
T Consensus 69 ------------~-~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 125 (220)
T cd03263 69 ------------D-RKAARQSLGYCPQFDALFDELTVREHLRFYARLK-GLPKSEIKEEVELLLRVLGLTD--------- 125 (220)
T ss_pred ------------c-hHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHH---------
Confidence 0 11234567889998887765 8889987643211 1122334567788899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~ 298 (361)
.+++++.+||+|||||++||||| ||||++||. +.|||++|| +.+..
T Consensus 126 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 197 (220)
T cd03263 126 --------KANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEA 197 (220)
T ss_pred --------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 45888999999999999999999 999999753 689999999 46678
Q ss_pred ccchhhHhhhhhhhcCCCCcccc
Q 018083 299 LTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~~~~i 321 (361)
+||+++ +|++|++++.|+++++
T Consensus 198 ~~d~i~-~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 198 LCDRIA-IMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCEEE-EEECCEEEecCCHHHc
Confidence 899996 5999999998887653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=301.89 Aligned_cols=225 Identities=17% Similarity=0.186 Sum_probs=188.4
Q ss_pred hccccccccceeeecC-cceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 82 IGSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~-~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
.+++|+++||++.|.. +.+.+++++ |||+|.+||++||||+||||||-..+.|+|+++...-..-+|+|.|+|.++
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~---isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dl 79 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKG---ISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDL 79 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeecc---ceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhh
Confidence 4578999999999963 334688666 999999999999999999999999999999998544334579999999997
Q ss_pred CcceEeEeeeecCCCcceeeeecCC-CCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcc
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRS-LSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~-~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
-... .-.+...|+ .|+++||+|. +.|. +|.+.|...+..+++..+.+.++++.++|+.+|+.+
T Consensus 80 l~~s------------e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~- 146 (534)
T COG4172 80 LAAS------------ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPE- 146 (534)
T ss_pred hcCC------------HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc-
Confidence 5211 112233343 5788999986 3344 899999998888888888999999999999999975
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 290 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIi 290 (361)
++..++.||++|||||||||+||.|| ||||.+||- |..+++
T Consensus 147 -------------p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lf 213 (534)
T COG4172 147 -------------PEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILF 213 (534)
T ss_pred -------------hhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEE
Confidence 22367999999999999999999999 999999752 999999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhh
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 336 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~ 336 (361)
||| ..+.++||||+ ||.+|++++.|+++++|..|.|+|++.++.+
T Consensus 214 ITHDL~iVr~~ADrV~-VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 214 ITHDLGIVRKFADRVY-VMQHGEIVETGTTETLFAAPQHPYTRKLLAA 260 (534)
T ss_pred EeccHHHHHHhhhhEE-EEeccEEeecCcHHHHhhCCCChHHHHHHhc
Confidence 999 57889999997 5999999999999999999999998776654
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=308.01 Aligned_cols=197 Identities=14% Similarity=0.077 Sum_probs=161.3
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++||+++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 38 ~~~~i~i~nl~k~y~~~---~~---l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-----p~~G~i~i~G~~~~ 106 (340)
T PRK13536 38 STVAIDLAGVSKSYGDK---AV---VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS-----PDAGKITVLGVPVP 106 (340)
T ss_pred CceeEEEEEEEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCceEEEECCEECC
Confidence 34579999999999753 56 566999999999999999999999999999999999 99999999998864
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. . ....+..++|++|++.+++. ++.+|+.+..... ..+.....+++.++++.+++.+
T Consensus 107 ~---------------~-~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~----- 164 (340)
T PRK13536 107 A---------------R-ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLES----- 164 (340)
T ss_pred c---------------c-hHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 1 1 12345568889998877655 8888887532211 1222344566778899999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
.+++++.+||||||||++||+|| ||||++||+ |+|||++||
T Consensus 165 ------------~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l 232 (340)
T PRK13536 165 ------------KADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM 232 (340)
T ss_pred ------------hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 45889999999999999999999 999999763 899999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+++..+||||+ +|++|+++..|+++++...
T Consensus 233 ~e~~~~~d~i~-il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 233 EEAERLCDRLC-VLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHHHhCCEEE-EEECCEEEEEcCHHHHHhh
Confidence 67889999996 5999999999999888654
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=295.73 Aligned_cols=217 Identities=19% Similarity=0.225 Sum_probs=164.6
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++.....|++|+|.++|.++.
T Consensus 9 ~~~~l~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 9 AQPQIKVENLNLWYGEK---QA---LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred cceeEEEeeeEEEeCCe---ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 45689999999999753 45 6669999999999999999999999999999999971100027999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++.... ..+.....+++.++++.+++....
T Consensus 83 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~---- 144 (258)
T PRK14268 83 EP-------------DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIH-GANKKDLDGVVENALRSAALWDET---- 144 (258)
T ss_pred cc-------------cchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcch----
Confidence 10 001112345678889988777678889998754211 112223345677788888884311
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++++.+|||||+||++||||| ||||++||. ++|||++|| ++
T Consensus 145 ---------~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~ 215 (258)
T PRK14268 145 ---------SDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQ 215 (258)
T ss_pred ---------hhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence 0035788999999999999999999 999999753 789999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
+..+|||++ +|++|++++.|++++++..+.+.+++.
T Consensus 216 ~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~ 251 (258)
T PRK14268 216 AARISDYTG-FFLMGELIEFGQTRQIFHNPREKSTED 251 (258)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHhcCCCCHHHHH
Confidence 778999996 599999999999999988776665443
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=297.13 Aligned_cols=201 Identities=17% Similarity=0.201 Sum_probs=159.2
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
.++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 26 ~~~~~~~~~~~~---~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~i~g~~~~~~~-- 92 (269)
T cd03294 26 SKEEILKKTGQT---VG---VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-----PTSGKVLIDGQDIAAMS-- 92 (269)
T ss_pred hhhhhhhhcCCc---eE---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccC--
Confidence 577999999763 45 666999999999999999999999999999999999 99999999998764100
Q ss_pred EeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 167 QEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
...+.. .+..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 93 ----------~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 152 (269)
T cd03294 93 ----------RKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ-GVPRAEREERAAEALELVGLEG--------- 152 (269)
T ss_pred ----------hhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHh---------
Confidence 000111 12457889998877765 8999998754311 1122344566788899999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +++
T Consensus 153 --------~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~ 224 (269)
T cd03294 153 --------WEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEA 224 (269)
T ss_pred --------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45899999999999999999999 999999653 789999999 467
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
..+||+++ +|++|++++.|++++++..+.+.+
T Consensus 225 ~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~ 256 (269)
T cd03294 225 LRLGDRIA-IMKDGRLVQVGTPEEILTNPANDY 256 (269)
T ss_pred HHhcCEEE-EEECCEEEEeCCHHHHHhCcCcHH
Confidence 78999996 599999999999998887655433
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=294.50 Aligned_cols=215 Identities=16% Similarity=0.137 Sum_probs=162.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~ 71 (257)
T PRK10619 3 ENKLNVIDLHKRYGEH---EV---LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGSIVVNGQTINL 71 (257)
T ss_pred CccEEEeeeEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEccc
Confidence 4679999999999753 45 666999999999999999999999999999999999 999999999987631
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.... ...+.... .......+..++|++|++.+++. ++.+|+.++............++++.++++.+++...
T Consensus 72 ~~~~-~~~~~~~~-~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----- 144 (257)
T PRK10619 72 VRDK-DGQLKVAD-KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDER----- 144 (257)
T ss_pred cccc-cccccccc-chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChh-----
Confidence 0000 00000000 00011234568999999888775 8999987643211112223455678889999999762
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
..++++.+||||||||++||||| ||||++||. |+|||++|| .
T Consensus 145 -----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~ 213 (257)
T PRK10619 145 -----------AQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 213 (257)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 12778999999999999999999 999999753 899999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
.+..+|||++ +|++|+++..|++++++..+.+
T Consensus 214 ~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~ 245 (257)
T PRK10619 214 FARHVSSHVI-FLHQGKIEEEGAPEQLFGNPQS 245 (257)
T ss_pred HHHHhcCEEE-EEECCEEEEeCCHHHhhhCccC
Confidence 6677899996 5999999999999888765543
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=271.62 Aligned_cols=193 Identities=17% Similarity=0.159 Sum_probs=159.2
Q ss_pred cccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.+|+++++++..+... ...+ |++|+|.|.+||.++||||||||||||+-.++|+.+ |++|+|.+.|+++..
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~I---L~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-----~ssGeV~l~G~~L~~ 76 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSI---LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-----PSSGEVRLLGQPLHK 76 (228)
T ss_pred ceeehhhhhhhhcCCCcceeE---eecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC-----CCCceEEEcCcchhh
Confidence 3799999999987543 2456 555999999999999999999999999999999999 999999999998862
Q ss_pred ceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.... ..... .+.+++|||.+.++|+ +..+||..++...+. .....+..+.++|+.+|+...
T Consensus 77 ldEd------------~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge-~~~~~~~~A~~lL~~vGLg~R---- 139 (228)
T COG4181 77 LDED------------ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE-SSADSRAGAKALLEAVGLGKR---- 139 (228)
T ss_pred cCHH------------HHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC-ccccHHHHHHHHHHHhCcccc----
Confidence 1110 01122 3468999999999988 899999998875432 234455678889999999984
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
+..+|.+||||+|||||||||+ ||||.+||. |.|+++|||
T Consensus 140 -------------l~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD 206 (228)
T COG4181 140 -------------LTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHD 206 (228)
T ss_pred -------------cccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCC
Confidence 4999999999999999999999 999999763 999999999
Q ss_pred CccccccchhhHhhhhhhhcCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGI 315 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~ 315 (361)
..++.-|+|+ +.|..|+|++.
T Consensus 207 ~~LA~Rc~R~-~r~~~G~l~~~ 227 (228)
T COG4181 207 PQLAARCDRQ-LRLRSGRLVED 227 (228)
T ss_pred HHHHHhhhhe-eeeecceeccC
Confidence 4666779999 57999999864
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=297.18 Aligned_cols=200 Identities=13% Similarity=0.212 Sum_probs=161.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|+++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~~--~~---l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-----p~~G~i~i~g~~~~~~ 73 (283)
T PRK13636 4 YILKVEELNYNYSDGT--HA---LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-----PSSGRILFDGKPIDYS 73 (283)
T ss_pred ceEEEEeEEEEeCCCC--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCEECCCC
Confidence 4799999999996432 45 666999999999999999999999999999999999 9999999999876300
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......+..++|++|++. ++..++.+|+.++.... ..+.....+++.++++.+++.+
T Consensus 74 -------------~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------ 133 (283)
T PRK13636 74 -------------RKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEH------ 133 (283)
T ss_pred -------------cchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChh------
Confidence 1112234566889999873 44558999998754321 1233444567888899999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
++++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 134 -----------~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~ 202 (283)
T PRK13636 134 -----------LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI 202 (283)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 45899999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+..+|||++ +|++|++++.|++++++..+
T Consensus 203 ~~~~~~~dri~-~l~~G~i~~~g~~~~~~~~~ 233 (283)
T PRK13636 203 DIVPLYCDNVF-VMKEGRVILQGNPKEVFAEK 233 (283)
T ss_pred HHHHHhCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 56678999996 59999999999998887643
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=302.16 Aligned_cols=195 Identities=13% Similarity=0.082 Sum_probs=158.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~i~~~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~- 70 (303)
T TIGR01288 3 VAIDLVGVSKSYGDK---VV---VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS-----PDRGKITVLGEPVPS- 70 (303)
T ss_pred cEEEEEeEEEEeCCe---EE---EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECcc-
Confidence 368999999999753 46 566999999999999999999999999999999999 999999999987631
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.....+..++|++|++.+++. ++.+|+.+..... ..+....++++.++++.+++.+
T Consensus 71 ---------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~------- 127 (303)
T TIGR01288 71 ---------------RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLES------- 127 (303)
T ss_pred ---------------cHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChh-------
Confidence 011234568889998877765 8889887532211 1223344556778889999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| ||||++||. |.|||++|| ++
T Consensus 128 ----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~ 197 (303)
T TIGR01288 128 ----------KADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 197 (303)
T ss_pred ----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 45889999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+..+||+++ +|++|+++..|+++++...
T Consensus 198 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 198 AERLCDRLC-VLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHHhCCEEE-EEECCEEEEEcCHHHHHhh
Confidence 778999996 5999999999999888654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=292.01 Aligned_cols=208 Identities=16% Similarity=0.153 Sum_probs=162.3
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+++++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|++++.. |++|+|.++|+++.
T Consensus 2 ~~~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--~~~G~i~~~g~~i~--- 70 (246)
T PRK14269 2 IAKTTNLNLFYGKK---QA---LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIA--KIDGLVEIEGKDVK--- 70 (246)
T ss_pred ceeeeeeEEEECCE---ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC--CCceEEEECCEecc---
Confidence 57899999999752 45 666999999999999999999999999999999974111 68999999998774
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecC-CChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~-~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..++|++|++.+++.++.+|+.++....... .....++++.++++.+++.+.+.
T Consensus 71 ------------~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----- 133 (246)
T PRK14269 71 ------------NQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK----- 133 (246)
T ss_pred ------------cCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-----
Confidence 111223355688999998888779999998754321111 12334456778899999964210
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
..+++.+.+||||||||++||||| |||+++||. ++|||++|| .++.
T Consensus 134 --------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~ 205 (246)
T PRK14269 134 --------DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGK 205 (246)
T ss_pred --------HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 034778899999999999999999 999999653 899999999 5677
Q ss_pred cccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
.+||+++ +|++|++++.|++++++..+.+++
T Consensus 206 ~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~ 236 (246)
T PRK14269 206 RVADYTA-FFHLGELIEFGESKEFFENPKQEK 236 (246)
T ss_pred hhCcEEE-EEECCEEEEECCHHHHHhCCCcHH
Confidence 8999996 599999999999998887665443
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=293.61 Aligned_cols=218 Identities=17% Similarity=0.213 Sum_probs=164.7
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|+++.|+.. .+ |+++||+|++||+++|+||||||||||+++|+|++++....+++|+|.++|+++.
T Consensus 9 ~~~~l~i~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 9 KQEVYQINGMNLWYGQH---HA---LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred CCceEEEeeEEEEECCe---ee---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 34589999999999753 45 6669999999999999999999999999999999861100126899999998763
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++..........+..+++.++++.+++.+.+
T Consensus 83 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---- 145 (259)
T PRK14274 83 KG-------------KVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV---- 145 (259)
T ss_pred cc-------------ccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh----
Confidence 10 0111233456888999987776788999986543211112233445677788888885421
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++.+.+||||||||++||||| ||||++||. ++|+|++|| +.
T Consensus 146 ---------~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~ 216 (259)
T PRK14274 146 ---------KDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQ 216 (259)
T ss_pred ---------hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH
Confidence 0135788999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
+..+|||++ +|++|++++.|++++++..+.++++..
T Consensus 217 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (259)
T PRK14274 217 AARVSDQTA-FFYMGELVECNDTNKMFSNPDDQRTLD 252 (259)
T ss_pred HHHhCCEEE-EEECCEEEEECCHHHHhhCCCCHHHHH
Confidence 778999996 599999999999999988766554433
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=351.67 Aligned_cols=229 Identities=11% Similarity=0.152 Sum_probs=183.3
Q ss_pred hhHHHHHHHHhHHHHHh------------hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcc
Q 018083 64 RDAVFREVLQSYDQLRT------------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 131 (361)
Q Consensus 64 ~~~~~~~~l~~~~~~~~------------~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKS 131 (361)
+..|+.++++.++++.. ...+.|+++||+|+|+++...++ |+++||+|++|+++|||||||||||
T Consensus 1132 a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v---L~~lsl~i~~G~~vAIVG~SGsGKS 1208 (1466)
T PTZ00265 1132 SFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI---YKDLTFSCDSKKTTAIVGETGSGKS 1208 (1466)
T ss_pred HHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCcc---ccCeeEEEcCCCEEEEECCCCCCHH
Confidence 34488999875443210 11235999999999974322356 5559999999999999999999999
Q ss_pred hhhhhhhhhhccc-------------------------------------------------ccccccceeeecccccCc
Q 018083 132 SLVNRISKVFEND-------------------------------------------------KFASERAQVTYNSSVGDG 162 (361)
Q Consensus 132 TLl~~I~gl~~~~-------------------------------------------------~~~p~~G~I~i~G~~i~~ 162 (361)
||+++|.|+|++. ...|++|+|++||.++.
T Consensus 1209 Tl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~- 1287 (1466)
T PTZ00265 1209 TVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDIC- 1287 (1466)
T ss_pred HHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHH-
Confidence 9999999999921 00126999999999987
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.+...++|..+++|+|++.+|..||++||.++.. +...+++.++++.+++++.+..-++
T Consensus 1288 --------------~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-------~at~eeI~~A~k~A~l~~fI~~LP~ 1346 (1466)
T PTZ00265 1288 --------------DYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-------DATREDVKRACKFAAIDEFIESLPN 1346 (1466)
T ss_pred --------------hCCHHHHHhhccEeCCCCccccccHHHHHhcCCC-------CCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 5677788999999999999999999999998743 3345678889999999887766677
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec-----------------CCccEEEEEc-Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR-----------------DDKPVVVVTH-GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~-----------------~g~tvIiiTH-~~ 295 (361)
.+.+.|++ ....||||||||++||||| |||||+|| .++|+|+||| -.
T Consensus 1347 GydT~VGe------~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls 1420 (1466)
T PTZ00265 1347 KYDTNVGP------YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA 1420 (1466)
T ss_pred ccCCccCC------CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH
Confidence 77776665 3557999999999999999 99999964 2689999999 45
Q ss_pred cccccchhhHhhhh----hhhc-CCCCccccccC
Q 018083 296 LLSLTDRARIRTYL----GELL-GIPPAKQIFDI 324 (361)
Q Consensus 296 ~~~~aDri~vvl~~----G~iv-~~g~~~~i~~~ 324 (361)
..+.||+|+ +|++ |+++ +.|++++++..
T Consensus 1421 ti~~aD~Iv-vl~~~~~~G~iv~e~Gth~eLl~~ 1453 (1466)
T PTZ00265 1421 SIKRSDKIV-VFNNPDRTGSFVQAHGTHEELLSV 1453 (1466)
T ss_pred HHHhCCEEE-EEeCCCCCCCEEEEecCHHHHHhc
Confidence 567799995 6999 9965 89999999863
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=295.51 Aligned_cols=208 Identities=12% Similarity=0.090 Sum_probs=158.2
Q ss_pred ccccccceeeecCc------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc
Q 018083 85 LTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 158 (361)
Q Consensus 85 ~lei~nl~~~Y~~~------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 158 (361)
+|+++||++.|++. ....+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~ 73 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPV---LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-----PAQGTVSFRGQ 73 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEE---eeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCE
Confidence 68999999999631 01246 566999999999999999999999999999999999 99999999998
Q ss_pred ccCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHH-HHHHhccccceeEEecCCChhhhhhhcccccccCCCc
Q 018083 159 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 235 (361)
Q Consensus 159 ~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~ 235 (361)
++... . .......+..++|++|++. +++ .++.+|+.++.............+++.++++.+++..
T Consensus 74 ~i~~~--------~----~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 141 (265)
T TIGR02769 74 DLYQL--------D----RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS 141 (265)
T ss_pred Ecccc--------C----HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh
Confidence 76410 0 0001113456788899863 333 3788887654321111222344567788899999963
Q ss_pred ceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEE
Q 018083 236 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 289 (361)
Q Consensus 236 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvI 289 (361)
. ++++++.+||||||||++||||| ||||++||. ++|||
T Consensus 142 ~----------------~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii 205 (265)
T TIGR02769 142 E----------------DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYL 205 (265)
T ss_pred h----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 2 35889999999999999999999 999999653 78999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
++|| +.+..+||+++ +|++|++++.|++++++. +.++++
T Consensus 206 ivsH~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~-~~~~~~ 246 (265)
T TIGR02769 206 FITHDLRLVQSFCQRVA-VMDKGQIVEECDVAQLLS-FKHPAG 246 (265)
T ss_pred EEeCCHHHHHHHhcEEE-EEeCCEEEEECCHHHHcC-CCCHHH
Confidence 9999 46678999996 599999999999998876 344443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=293.07 Aligned_cols=216 Identities=18% Similarity=0.209 Sum_probs=165.7
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++.....|++|+|.++|.++.
T Consensus 10 ~~~~l~~~~l~~~~~~~---~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 10 APSKIQVRNLNFYYGKF---HA---LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred CCceEEEEEEEEEeCCe---EE---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 45679999999999753 45 6669999999999999999999999999999999851100147999999998763
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++.......+.....+++.++++.+++.+.+
T Consensus 84 ~~-------------~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---- 146 (260)
T PRK10744 84 TP-------------KQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV---- 146 (260)
T ss_pred cc-------------ccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 10 0112234566888999987776789999987543221222334456778889999885311
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++.+.+|||||+||++||||| ||||++||. +.|||++|| +.
T Consensus 147 ---------~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~ 217 (260)
T PRK10744 147 ---------KDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQ 217 (260)
T ss_pred ---------HHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 0135788999999999999999999 999999753 689999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
+..+||+++ +|++|++++.|++++++..+.++++
T Consensus 218 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~ 251 (260)
T PRK10744 218 AARCSDYTA-FMYLGELIEFGNTDTIFTKPAKKQT 251 (260)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHhCCCcHHH
Confidence 678999996 5999999999999998877666554
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=284.97 Aligned_cols=191 Identities=15% Similarity=0.194 Sum_probs=152.2
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~--- 66 (222)
T cd03224 1 LEVENLNAGYGKS---QI---LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRFDGRDITG--- 66 (222)
T ss_pred CEEeeEEeecCCe---eE---eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCC---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999977641
Q ss_pred eEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhccccccc-CCCcceeEEEE
Q 018083 166 LQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIRKVN 242 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~-gl~~~~~~~~~ 242 (361)
....+ .+..++|++|++.+++. ++.+|+.++..... .....+++.++++.+ ++.+
T Consensus 67 ------------~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~------- 124 (222)
T cd03224 67 ------------LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR---RAKRKARLERVYELFPRLKE------- 124 (222)
T ss_pred ------------CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhh-------
Confidence 11111 23457889999888876 89999987643211 123344556667776 4655
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| ++
T Consensus 125 ----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 194 (222)
T cd03224 125 ----------RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF 194 (222)
T ss_pred ----------hhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 35889999999999999999999 999999753 789999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCcccccc
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+..+||+++ +|++|+++..+++++++.
T Consensus 195 ~~~~~d~i~-~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 195 ALEIADRAY-VLERGRVVLEGTAAELLA 221 (222)
T ss_pred HHHhccEEE-EeeCCeEEEeCCHHHHhc
Confidence 779999996 599999999888776543
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=304.31 Aligned_cols=221 Identities=15% Similarity=0.169 Sum_probs=169.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|.+.. ..+ |+++||+|++|++++|+||||||||||+++|+|+.+.....|++|+|.++|.++.
T Consensus 77 ~~~~i~~~nls~~y~~~~-~~~---L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRT-KHV---LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred cCceEEEEeeEEEecCCC-cee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 345899999999996432 245 6669999999999999999999999999999999862111157999999998874
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
. ......+.++.+++++|++.++..++.+|+.++.......+.+...+.+.++++.+++.+.+
T Consensus 153 ~-------------~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l---- 215 (329)
T PRK14257 153 S-------------KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV---- 215 (329)
T ss_pred c-------------cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh----
Confidence 1 01223345677899999999887899999997643211111122233456677888775421
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
....++++..||||||||++||||| ||||++||. ++|||+||| +.
T Consensus 216 ---------~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~ 286 (329)
T PRK14257 216 ---------KDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQ 286 (329)
T ss_pred ---------hhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 0135788999999999999999999 999999753 799999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
+..+||||+ +|++|++++.|++++++..|.++.+..+
T Consensus 287 i~~~~Drii-vl~~G~i~e~g~~~~l~~~~~~~~~~~~ 323 (329)
T PRK14257 287 AQRISDETV-FFYQGWIEEAGETKTIFIHPKNKRTKDY 323 (329)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHhcCCCcHHHHHH
Confidence 778899996 6999999999999999998887654433
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=324.54 Aligned_cols=224 Identities=14% Similarity=0.193 Sum_probs=174.2
Q ss_pred hhhhHHHHHHHHhHHHHHh--h------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 62 RRRDAVFREVLQSYDQLRT--R------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~--~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
+.+..++.++++.+++.+. . ..+.++++|++++|+++. ++ |+++||+|++|++++|+||||||||||
T Consensus 303 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~--~i---L~~inl~i~~G~~v~IvG~sGsGKSTL 377 (588)
T PRK13657 303 APKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSR--QG---VEDVSFEAKPGQTVAIVGPTGAGKSTL 377 (588)
T ss_pred HHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCCC--ce---ecceeEEECCCCEEEEECCCCCCHHHH
Confidence 3444467777654332111 0 123589999999997543 35 666999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 134 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
+++|+|+++ |++|+|.++|.++. .+...+.+..++||+|++.+|..++.+|+.++..
T Consensus 378 l~lL~gl~~-----p~~G~I~i~g~~i~---------------~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~--- 434 (588)
T PRK13657 378 INLLQRVFD-----PQSGRILIDGTDIR---------------TVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP--- 434 (588)
T ss_pred HHHHhcCcC-----CCCCEEEECCEEhh---------------hCCHHHHHhheEEEecCcccccccHHHHHhcCCC---
Confidence 999999999 99999999999886 4555667788999999999999999999987532
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
+..++++..+++.+++.+.+...++.+.+.+ ......||||||||++||||| ||||++||.
T Consensus 435 ----~~~d~~i~~al~~~~l~~~i~~lp~gldt~i------~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~ 504 (588)
T PRK13657 435 ----DATDEEMRAAAERAQAHDFIERKPDGYDTVV------GERGRQLSGGERQRLAIARALLKDPPILILDEATSALDV 504 (588)
T ss_pred ----CCCHHHHHHHHHHhCHHHHHHhCcccccchh------cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 2234556677888887664433333333322 334567999999999999999 999999763
Q ss_pred ---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ....+.||+|+ +|++|++++.|++++++..
T Consensus 505 ~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii-~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 505 ETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRIL-VFDNGRVVESGSFDELVAR 559 (588)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEE-EEECCEEEEeCCHHHHHHC
Confidence 799999999 55667899995 6999999999999888653
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=286.84 Aligned_cols=193 Identities=15% Similarity=0.173 Sum_probs=155.8
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~--- 66 (232)
T cd03218 1 LRAENLSKRYGKR---KV---VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-----PDSGKILLDGQDITK--- 66 (232)
T ss_pred CeEEEEEEEeCCE---Ee---eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEeccc---
Confidence 5789999999753 45 566999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
..... .+..+++++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 67 ------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 125 (232)
T cd03218 67 ------------LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR-GLSKKEREEKLEELLEEFHITH-------- 125 (232)
T ss_pred ------------CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 11111 12357888998887776 8999988754321 1122334456778899999986
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
.+++.+.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 126 ---------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~ 196 (232)
T cd03218 126 ---------LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRET 196 (232)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999753 789999999 478
Q ss_pred ccccchhhHhhhhhhhcCCCCcccccc
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
..+||+++ +|++|+++..|++++++.
T Consensus 197 ~~~~d~i~-~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 197 LSITDRAY-IIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhCCEEE-EEECCeEEEEeCHHHhhc
Confidence 89999996 599999999888877654
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=285.54 Aligned_cols=189 Identities=16% Similarity=0.156 Sum_probs=152.2
Q ss_pred ccccccceeeecCcce-eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~-~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+|+++|++++|++... .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~i---l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~- 71 (218)
T cd03266 1 MITADALTKRFRDVKKTVQA---VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-----PDAGFATVDGFDVVK- 71 (218)
T ss_pred CeEEEEEEEecCCCCcccee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEEccc-
Confidence 4789999999975311 135 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
...+.+..+++++|++.+++. ++.+|+.+..... .....+..+++.++++.+++.+
T Consensus 72 ---------------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 128 (218)
T cd03266 72 ---------------EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTARLEELADRLGMEE------- 128 (218)
T ss_pred ---------------CHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHH-------
Confidence 112334568889999887775 8999987643211 1223345567788999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| .+
T Consensus 129 ----------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 198 (218)
T cd03266 129 ----------LLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE 198 (218)
T ss_pred ----------HHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999753 789999999 46
Q ss_pred cccccchhhHhhhhhhhcCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g 316 (361)
+..+||+++ +|++|++++.|
T Consensus 199 ~~~~~d~i~-~l~~G~i~~~~ 218 (218)
T cd03266 199 VERLCDRVV-VLHRGRVVYEG 218 (218)
T ss_pred HHHhcCEEE-EEECCEEeecC
Confidence 778999996 59999987653
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=327.06 Aligned_cols=219 Identities=14% Similarity=0.181 Sum_probs=171.8
Q ss_pred ccccccccceeeecCc--------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee
Q 018083 83 GSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 154 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~--------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~ 154 (361)
.++|+++||++.|+.. ...++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-----p~~G~I~ 382 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHA---VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-----SQGGEII 382 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEE---EeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCcEEE
Confidence 4689999999999621 01246 556999999999999999999999999999999999 9999999
Q ss_pred ecccccCcceEeEeeeecCCCcceeeeecCCCCcccccch--HHHHH-HHHhccccceeEEecCCChhhhhhhccccccc
Q 018083 155 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 155 i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~ 231 (361)
++|+++... . .......+..++||||++ .+++. ++.+|+.++............++++.++++.+
T Consensus 383 ~~g~~i~~~--------~----~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ 450 (623)
T PRK10261 383 FNGQRIDTL--------S----PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERV 450 (623)
T ss_pred ECCEECCcC--------C----HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc
Confidence 999876410 0 001112345688999987 35554 88888876543211112234456788899999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------C
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------D 285 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g 285 (361)
+|.+. .+++++++||||||||++||||| ||||++||. |
T Consensus 451 gL~~~----------------~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g 514 (623)
T PRK10261 451 GLLPE----------------HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG 514 (623)
T ss_pred CCCHH----------------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 99632 35899999999999999999999 999999753 7
Q ss_pred ccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 286 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 286 ~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
.|||+||| +.+..+||||+ +|++|++++.|++++++..|.+++++.++..+.
T Consensus 515 ~tvi~isHdl~~v~~~~dri~-vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~~~~ 568 (623)
T PRK10261 515 IAYLFISHDMAVVERISHRVA-VMYLGQIVEIGPRRAVFENPQHPYTRKLMAAVP 568 (623)
T ss_pred CEEEEEeCCHHHHHHhCCEEE-EEECCEEEEecCHHHHhcCCCCHHHHHHHhhCC
Confidence 89999999 57778999996 599999999999999999888888776665543
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=281.94 Aligned_cols=184 Identities=14% Similarity=0.188 Sum_probs=149.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~v~~~g~~~~~--- 66 (213)
T cd03301 1 VELENVTKRFGNV---TA---LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-----PTSGRIYIGGRDVTD--- 66 (213)
T ss_pred CEEEeeEEEECCe---ee---eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
... .+..+++++|++.+++. ++.+|+.++.... .......++++.++++.+++.+
T Consensus 67 ------------~~~--~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (213)
T cd03301 67 ------------LPP--KDRDIAMVFQNYALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREVAELLQIEH--------- 122 (213)
T ss_pred ------------CCc--ccceEEEEecChhhccCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHH---------
Confidence 111 12357888999887765 8889988753321 1223444567788899999986
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 123 --------~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~ 194 (213)
T cd03301 123 --------LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEA 194 (213)
T ss_pred --------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 45899999999999999999999 999999752 789999999 467
Q ss_pred ccccchhhHhhhhhhhcCCC
Q 018083 297 LSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g 316 (361)
..+||+++ +|++|++++.|
T Consensus 195 ~~~~d~i~-~l~~g~~~~~g 213 (213)
T cd03301 195 MTMADRIA-VMNDGQIQQIG 213 (213)
T ss_pred HHhcCeEE-EEECCEEEecC
Confidence 78999996 59999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=293.47 Aligned_cols=207 Identities=12% Similarity=0.095 Sum_probs=157.4
Q ss_pred ccccccccceeeecCc------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 83 GSLTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
+++|+++||+++|+.. ...++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~ 73 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEA---VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGELLID 73 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccce---eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCEEEEC
Confidence 4579999999999631 01245 666999999999999999999999999999999999 999999999
Q ss_pred ccccCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCC
Q 018083 157 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 233 (361)
Q Consensus 157 G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl 233 (361)
|.++.. ......+..++|++|++. +++. ++.+++.+..............+++.++++.+++
T Consensus 74 g~~~~~---------------~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l 138 (267)
T PRK15112 74 DHPLHF---------------GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL 138 (267)
T ss_pred CEECCC---------------CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC
Confidence 987641 001112235778888764 2333 6666665543211111223445677889999999
Q ss_pred CcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------Ccc
Q 018083 234 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKP 287 (361)
Q Consensus 234 ~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~t 287 (361)
.+. ..++++.+||||||||++||||| ||||++||. |.|
T Consensus 139 ~~~----------------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 202 (267)
T PRK15112 139 LPD----------------HASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGIS 202 (267)
T ss_pred ChH----------------HHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcE
Confidence 532 34778899999999999999999 999999652 789
Q ss_pred EEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 288 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 288 vIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
||++|| +++..+||+++ +|++|++++.|++++++..+.+..
T Consensus 203 viivsH~~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~ 245 (267)
T PRK15112 203 YIYVTQHLGMMKHISDQVL-VMHQGEVVERGSTADVLASPLHEL 245 (267)
T ss_pred EEEEeCCHHHHHHhcCEEE-EEECCEEEecCCHHHHhcCCCCHH
Confidence 999999 56778899996 599999999999988887665443
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=291.12 Aligned_cols=210 Identities=19% Similarity=0.230 Sum_probs=162.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhh---hccccccc--ccceeeeccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV---FENDKFAS--ERAQVTYNSS 158 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl---~~~~~~~p--~~G~I~i~G~ 158 (361)
++|+++|+++.|+.. ++ |+++||+|++|++++|+||||||||||+++|+|+ ++ | ++|+|.++|.
T Consensus 2 ~~l~~~~~~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-----~~~~~G~i~~~g~ 70 (250)
T PRK14245 2 VKIDARDVNFWYGDF---HA---LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP-----ATRLEGEIRIDGR 70 (250)
T ss_pred cEEEEEEEEEEECCE---eE---EeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC-----CCCCceEEEECCE
Confidence 579999999999753 45 6669999999999999999999999999999997 34 4 5899999998
Q ss_pred ccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 159 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 159 ~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
++... .......+..++|++|++.+++.++.+|+.++.............+++.++++.+++.+.+
T Consensus 71 ~~~~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~- 136 (250)
T PRK14245 71 NIYDK-------------GVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV- 136 (250)
T ss_pred ecccc-------------cccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-
Confidence 76410 0011233456888999887776688899887543211111223455677888889886421
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH- 293 (361)
...+++.+.+||||||||++||||| ||||++||. ++|||++||
T Consensus 137 ------------~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~ 204 (250)
T PRK14245 137 ------------KDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHN 204 (250)
T ss_pred ------------hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 0135788999999999999999999 999999753 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
..+..+|||++ +|++|++++.|++++++..+.+++++
T Consensus 205 ~~~~~~~~d~v~-~l~~G~~~~~~~~~~~~~~~~~~~~~ 242 (250)
T PRK14245 205 MQQAARVSDKTA-FFYMGEMVEYDDTKKIFTNPEKEATQ 242 (250)
T ss_pred HHHHHhhCCEEE-EEECCEEEEECCHHHHhcCCCChHHH
Confidence 46778999996 59999999999999998877655543
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=282.40 Aligned_cols=197 Identities=14% Similarity=0.184 Sum_probs=158.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++||+..|+. +++ |++|||++++||+++|+||||+|||||+|+|+|+.+ +.+|+|.++|+|++.
T Consensus 2 ~mL~v~~l~~~YG~---~~~---L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-----~~~G~I~~~G~dit~- 69 (237)
T COG0410 2 PMLEVENLSAGYGK---IQA---LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-----PRSGRIIFDGEDITG- 69 (237)
T ss_pred CceeEEeEeecccc---eeE---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeeEEECCeecCC-
Confidence 58999999999987 477 555999999999999999999999999999999999 999999999999972
Q ss_pred eEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccC-CCcceeEE
Q 018083 164 YFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRK 240 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~g-l~~~~~~~ 240 (361)
....+ .+.-++||||.-.+|+. ||.+|+..+...... +...+..++++.+.+- |.+
T Consensus 70 --------------~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~--~~~~~~~~e~v~~lFP~Lke----- 128 (237)
T COG0410 70 --------------LPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD--KEAQERDLEEVYELFPRLKE----- 128 (237)
T ss_pred --------------CCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc--cccccccHHHHHHHChhHHH-----
Confidence 22222 34457889999999999 999999987653221 1111111333333331 223
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
..+++..+|||||||.+|||||| |||+.||.+ +.||++|.+
T Consensus 129 ------------r~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn 196 (237)
T COG0410 129 ------------RRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN 196 (237)
T ss_pred ------------HhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEecc
Confidence 45889999999999999999999 999999643 779999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
..+.++|||.+ +|..|+++..|+.+++...|.
T Consensus 197 ~~~Al~iaDr~y-vle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 197 ARFALEIADRGY-VLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred HHHHHHhhCEEE-EEeCCEEEEecCHHHHhcCHH
Confidence 68889999996 599999999999999987654
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=294.94 Aligned_cols=199 Identities=17% Similarity=0.233 Sum_probs=159.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++.. .+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~~~--~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~- 69 (275)
T PRK13639 1 ILETRDLKYSYPDGT--EA---LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-----PTSGEVLIKGEPIKYD- 69 (275)
T ss_pred CEEEEEEEEEeCCCC--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEECccc-
Confidence 478999999996432 35 666999999999999999999999999999999999 9999999999876310
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.......+..++|++|++. ++..++.+|+.++.... ........+++.++++.+++.+
T Consensus 70 ------------~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~------- 129 (275)
T PRK13639 70 ------------KKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEG------- 129 (275)
T ss_pred ------------cchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCch-------
Confidence 0111223456889999863 44558899998754321 1223344567888999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
++++++.+|||||+||++||||| ||||++||. +.|||++|| +.
T Consensus 130 ----------~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~ 199 (275)
T PRK13639 130 ----------FENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL 199 (275)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 45889999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+..+||+++ +|++|++++.|++++++..+
T Consensus 200 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~ 228 (275)
T PRK13639 200 VPVYADKVY-VMSDGKIIKEGTPKEVFSDI 228 (275)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHhcCh
Confidence 778999996 59999999999999887654
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=321.33 Aligned_cols=226 Identities=14% Similarity=0.119 Sum_probs=180.4
Q ss_pred hhhhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhh
Q 018083 62 RRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 135 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~ 135 (361)
+....|+.++++.+++.... ....++++|++++|++.. .++ |+++||+|++|++++|+|+||||||||++
T Consensus 301 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~i---l~~inl~i~~G~~v~IvG~sGsGKSTLl~ 376 (571)
T TIGR02203 301 LAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRD-RPA---LDSISLVIEPGETVALVGRSGSGKSTLVN 376 (571)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCCC-Ccc---ccCeeEEecCCCEEEEECCCCCCHHHHHH
Confidence 34455888888654432211 123589999999997532 245 66699999999999999999999999999
Q ss_pred hhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecC
Q 018083 136 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 215 (361)
Q Consensus 136 ~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~ 215 (361)
+|+|+++ |++|+|+++|.++. .+...+.+..++|++|++.+|..++.+||.++..
T Consensus 377 lL~gl~~-----~~~G~I~i~g~~i~---------------~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~----- 431 (571)
T TIGR02203 377 LIPRFYE-----PDSGQILLDGHDLA---------------DYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT----- 431 (571)
T ss_pred HHHhccC-----CCCCeEEECCEeHH---------------hcCHHHHHhhceEEccCcccccccHHHHHhcCCC-----
Confidence 9999999 99999999998876 4555667888999999999999999999986532
Q ss_pred CChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--
Q 018083 216 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 284 (361)
Q Consensus 216 ~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-- 284 (361)
++..++++.++++.+++.+.+.+.++.+.+.|++ ....||||||||++||||+ ||||++||.
T Consensus 432 -~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~------~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~ 504 (571)
T TIGR02203 432 -EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE------NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504 (571)
T ss_pred -CCCCHHHHHHHHHHcChHHHHHhCcCcccceecC------CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 1344567888899999887554445555554444 2357999999999999998 999999763
Q ss_pred -------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 -------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ....+.||+|+ +|++|++++.|++++++..
T Consensus 505 ~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii-~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 505 ERLVQAALERLMQGRTTLVIAHRLSTIEKADRIV-VMDDGRIVERGTHNELLAR 557 (571)
T ss_pred HHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEE-EEeCCEEEeeCCHHHHHHc
Confidence 799999999 56678899995 6999999999999998754
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=281.52 Aligned_cols=186 Identities=17% Similarity=0.190 Sum_probs=147.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|+.+. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~--~i---l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~-- 68 (214)
T TIGR02673 1 MIEFHNVSKAYPGGV--AA---LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-----PSRGQVRIAGEDVNR-- 68 (214)
T ss_pred CEEEEeeeEEeCCCc--ee---ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccc--
Confidence 478999999995322 45 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
+. .......+..++|++|++.+++. ++.+|+.++.... .......++++.++++.+++.+
T Consensus 69 ------~~----~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 129 (214)
T TIGR02673 69 ------LR----GRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR-GKKEREIQRRVGAALRQVGLEH-------- 129 (214)
T ss_pred ------CC----HHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 00 00011234567889999888765 8899988753311 1222344567788999999986
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
.+++.+.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 130 ---------~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~ 200 (214)
T TIGR02673 130 ---------KADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLV 200 (214)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 34889999999999999999999 999999753 789999999 567
Q ss_pred ccccchhhHhhhhhh
Q 018083 297 LSLTDRARIRTYLGE 311 (361)
Q Consensus 297 ~~~aDri~vvl~~G~ 311 (361)
..+||+++ +|++|+
T Consensus 201 ~~~~d~i~-~l~~G~ 214 (214)
T TIGR02673 201 DRVAHRVI-ILDDGR 214 (214)
T ss_pred HHhcCEEE-EecCCC
Confidence 78999996 588874
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=278.59 Aligned_cols=196 Identities=13% Similarity=0.147 Sum_probs=163.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
||++++++++|++. ++++++ |||++++|++++|+|||||||||++|+|++++. |++|.|+++|.+..
T Consensus 1 Ml~v~~l~K~y~~~--v~Avrd---VSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-----P~~G~v~idg~d~~--- 67 (245)
T COG4555 1 MLEVTDLTKSYGSK--VQAVRD---VSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-----PDSGKVTIDGVDTV--- 67 (245)
T ss_pred CeeeeehhhhccCH--Hhhhhh---eeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-----CCCceEEEeecccc---
Confidence 68999999999873 468544 999999999999999999999999999999999 99999999998864
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
-.+...++.++.++...-++.. |+.+|+.|-...+ ...+.+.+.++.++.+.++|.+
T Consensus 68 -------------~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~-~l~~~~~kari~~l~k~l~l~~-------- 125 (245)
T COG4555 68 -------------RDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN-GLSRKEIKARIAELSKRLQLLE-------- 125 (245)
T ss_pred -------------cChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHhChHH--------
Confidence 1222345667776644444444 8889988744322 3456778889999999999998
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec----------------CCccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~----------------~g~tvIiiTH--~~~ 296 (361)
+++++..+||.||||||+||||| |||++||| +|++||++|| .++
T Consensus 126 ---------~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Ev 196 (245)
T COG4555 126 ---------YLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV 196 (245)
T ss_pred ---------HHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHH
Confidence 67999999999999999999999 99999964 2999999999 688
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
..+|||++ ++++|+++..|+.+++....
T Consensus 197 ealCDrvi-vlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 197 EALCDRVI-VLHKGEVVLEGSIEALDART 224 (245)
T ss_pred HHhhheEE-EEecCcEEEcCCHHHHHHHH
Confidence 89999995 59999999999998876543
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=283.46 Aligned_cols=186 Identities=16% Similarity=0.199 Sum_probs=149.3
Q ss_pred cccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 86 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 86 lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
|+++|+++.|++.. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~~~~~i---l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~--- 69 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTA---LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-----PTSGEVLVDGEPVT--- 69 (220)
T ss_pred CeEEEEEEEcCCCCcceEE---EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECc---
Confidence 57899999997521 0145 666999999999999999999999999999999999 99999999997763
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
..+..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 70 -----------------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 123 (220)
T cd03293 70 -----------------GPGPDRGYVFQQDALLPWLTVLDNVALGLELQ-GVPKAEARERAEELLELVGLSG-------- 123 (220)
T ss_pred -----------------cccCcEEEEecccccccCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 013457888888877774 8889987654311 1222344567788999999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| .+
T Consensus 124 ---------~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 194 (220)
T cd03293 124 ---------FENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE 194 (220)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 45889999999999999999999 999999753 789999999 45
Q ss_pred cccccchhhHhhh--hhhhcCCCCc
Q 018083 296 LLSLTDRARIRTY--LGELLGIPPA 318 (361)
Q Consensus 296 ~~~~aDri~vvl~--~G~iv~~g~~ 318 (361)
+..+||+++ +|+ +|++++.++.
T Consensus 195 ~~~~~d~i~-~l~~~~G~i~~~~~~ 218 (220)
T cd03293 195 AVFLADRVV-VLSARPGRIVAEVEV 218 (220)
T ss_pred HHHhCCEEE-EEECCCCEEEEEEEe
Confidence 778999996 598 7999877654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=291.76 Aligned_cols=220 Identities=19% Similarity=0.215 Sum_probs=164.6
Q ss_pred hhhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 80 TRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 80 ~~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
.+..++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|++
T Consensus 16 ~~~~~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 89 (268)
T PRK14248 16 EAKEHILEVKDLSIYYGEK---RA---VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN 89 (268)
T ss_pred CCCCceEEEEEEEEEeCCc---ee---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEE
Confidence 3456789999999999753 45 66699999999999999999999999999999986311111589999999987
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
+... .......+..++|++|++.+++.++.+|+.++............++.+.++++.+++...+
T Consensus 90 i~~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-- 154 (268)
T PRK14248 90 ILDS-------------NINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-- 154 (268)
T ss_pred cccc-------------cccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch--
Confidence 6410 0111223456888999987777788999886542111101122344566677888775311
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-- 293 (361)
...+++.+.+||||||||++||||| ||||++||. +.|||++||
T Consensus 155 -----------~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~ 223 (268)
T PRK14248 155 -----------KDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNM 223 (268)
T ss_pred -----------HHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCH
Confidence 0135788999999999999999999 999999753 689999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
+.+..+|||++ +|++|++++.|++++++..+.++++..
T Consensus 224 ~~~~~~~d~v~-~l~~G~i~~~~~~~~~~~~~~~~~~~~ 261 (268)
T PRK14248 224 QQALRVSDRTA-FFLNGDLVEYDQTEQIFTSPKQQKTED 261 (268)
T ss_pred HHHHHhCCEEE-EEECCEEEEeCCHHHHHhCCCChHHHH
Confidence 46778999996 599999999999999888776655433
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=295.86 Aligned_cols=203 Identities=16% Similarity=0.188 Sum_probs=159.3
Q ss_pred ccccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+|+++|+++.|++.. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKG---LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-----PSSGTITIAGYHITP 73 (287)
T ss_pred EEEEEEEEEEcCCCCCccccc---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECcc
Confidence 578999999997421 0235 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccch--HHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
... .......+..++|++|++ .++..++.+|+.++.... ....+...+++.++++.+++...
T Consensus 74 ~~~-----------~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~---- 137 (287)
T PRK13641 74 ETG-----------NKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF-GFSEDEAKEKALKWLKKVGLSED---- 137 (287)
T ss_pred ccc-----------cchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh----
Confidence 000 001122345678899986 355458899998754311 12234455678889999999631
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
++++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 138 ------------~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~ 205 (287)
T PRK13641 138 ------------LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM 205 (287)
T ss_pred ------------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 35889999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+++..+||+++ +|++|+++..|++++++..
T Consensus 206 ~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 206 DDVAEYADDVL-VLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred HHHHHhCCEEE-EEECCEEEEeCCHHHHhcC
Confidence 56778999996 5999999999999887664
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=310.88 Aligned_cols=204 Identities=16% Similarity=0.191 Sum_probs=163.6
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc----cCcce
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----GDGTY 164 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~----i~~~~ 164 (361)
.++.++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|++ +..
T Consensus 28 ~~~~~~~g~---~~~---l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-----p~~G~I~idG~~~~~~i~~-- 94 (382)
T TIGR03415 28 EEILDETGL---VVG---VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP-----VSRGSVLVKDGDGSIDVAN-- 94 (382)
T ss_pred HHHHHhhCC---EEE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEeccccccc--
Confidence 445666765 355 666999999999999999999999999999999999 999999999963 220
Q ss_pred EeEeeeecCCCcceeeeecC-CCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. ...+.+.+ ..++|+||++.+++. ++.+|+.++.... ..++.+.++++.++++.++|.+
T Consensus 95 ------~~----~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~-g~~~~~~~~~a~e~le~vgL~~------- 156 (382)
T TIGR03415 95 ------CD----AATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ-GMPEAERRKRVDEQLELVGLAQ------- 156 (382)
T ss_pred ------CC----HHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 00 01112222 468999999999886 9999999875422 2234455678889999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+.++++.+||||||||++||||| |||+++||+ ++|||+||| +
T Consensus 157 ----------~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 157 ----------WADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45899999999999999999999 999999753 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
++.++||||+ +|++|++++.|++++++..|...+++.++
T Consensus 227 e~~~l~DrI~-vl~~G~iv~~g~~~ei~~~p~~~~~~~~~ 265 (382)
T TIGR03415 227 EALKIGNRIA-IMEGGRIIQHGTPEEIVLNPANDYVADFV 265 (382)
T ss_pred HHHHhCCEEE-EEECCEEEEecCHHHHhhCcchHHHHHHh
Confidence 7789999996 59999999999999998877665554443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=292.86 Aligned_cols=215 Identities=18% Similarity=0.219 Sum_probs=163.8
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|++++....|++|+|+++|+++.
T Consensus 16 ~~~~l~~~nl~~~~~~~---~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 16 TEIKMRARDVSVFYGEK---QA---LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CCceEEEEeEEEEECCE---EE---EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 56789999999999753 45 6669999999999999999999999999999999971000038999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec-CCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~-~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.. .......+..+++++|++.+++.++.+|+.++...... .......+++.++++.+++.+.+
T Consensus 90 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 153 (267)
T PRK14235 90 DP-------------RLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV--- 153 (267)
T ss_pred cc-------------ccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh---
Confidence 10 01112334567888998877766889999875432111 11233456678889999986411
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--C
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 294 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~ 294 (361)
...+++.+.+||||||||++||||| ||||++||. +.|||++|| +
T Consensus 154 ----------~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~ 223 (267)
T PRK14235 154 ----------KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQ 223 (267)
T ss_pred ----------hHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHH
Confidence 0034778999999999999999999 999999753 689999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
.+..+||+++ +|++|+++..|++++++..+.++.
T Consensus 224 ~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~ 257 (267)
T PRK14235 224 QAARVSQRTA-FFHLGNLVEVGDTEKMFTNPDDPR 257 (267)
T ss_pred HHHhhCCEEE-EEECCEEEEeCCHHHHHhCCCCHH
Confidence 6778999996 599999999999998887665443
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=288.82 Aligned_cols=215 Identities=17% Similarity=0.178 Sum_probs=162.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
..|+++|+++.|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14240 2 GKISVKDLDLFYGDF---QA---LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS 75 (250)
T ss_pred CeEEEEEEEEEECCc---ee---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 468999999999753 45 666999999999999999999999999999999976110012689999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..+++++|++.+++.++.+|+.++............++++.++++.+++.+.+.
T Consensus 76 -------------~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~----- 137 (250)
T PRK14240 76 -------------DIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK----- 137 (250)
T ss_pred -------------ccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-----
Confidence 01112234567888998877667888999875432111112334566777788887753110
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
..+++++.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 138 --------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 209 (250)
T PRK14240 138 --------DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQAS 209 (250)
T ss_pred --------HHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHH
Confidence 135788999999999999999999 999999753 789999999 4677
Q ss_pred cccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
.+||+++ +|++|+++..+++++++..+.++.+.
T Consensus 210 ~~~d~v~-~l~~G~i~~~~~~~~~~~~~~~~~~~ 242 (250)
T PRK14240 210 RISDKTA-FFLNGEIVEFGDTVDLFTNPKDKRTE 242 (250)
T ss_pred hhCCEEE-EEECCEEEEeCCHHHHHhCCCChHHH
Confidence 8999996 59999999999999988777665543
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=290.26 Aligned_cols=212 Identities=19% Similarity=0.259 Sum_probs=160.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++|++++|+.. ++ |+++||+|++||+++|+||||||||||+++|+|+++++...|++|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (253)
T PRK14267 2 KFAIETVNLRVYYGSN---HV---IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75 (253)
T ss_pred cceEEEEeEEEEeCCe---ee---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 4579999999999753 45 66699999999999999999999999999999999811000259999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec-CCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~-~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. .......+..+++++|++.+++. ++.+|+.++...... ...+...+++.++++.+++...+
T Consensus 76 ~-------------~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 139 (253)
T PRK14267 76 P-------------DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV--- 139 (253)
T ss_pred c-------------ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch---
Confidence 0 01111234568889999888776 899999875431111 12233445677888888885421
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--C
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 294 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~ 294 (361)
...+++++.+||||||||++||||| |||+++||. ++|||++|| +
T Consensus 140 ----------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~ 209 (253)
T PRK14267 140 ----------KDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPA 209 (253)
T ss_pred ----------hhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHH
Confidence 0035788999999999999999999 999999753 689999999 4
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
.+..+||+++ +|++|++++.|++++++..+.+
T Consensus 210 ~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~ 241 (253)
T PRK14267 210 QAARVSDYVA-FLYLGKLIEVGPTRKVFENPEH 241 (253)
T ss_pred HHHhhCCEEE-EEECCEEEEeCCHHHHHhCCCc
Confidence 6778999996 5999999999999988766543
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=278.29 Aligned_cols=176 Identities=15% Similarity=0.185 Sum_probs=142.8
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
+++|++++|++.. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 ~~~~l~~~~~~~~--~~---l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~----- 65 (205)
T cd03226 1 RIENISFSYKKGT--EI---LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK-----ESSGSILLNGKPIK----- 65 (205)
T ss_pred CcccEEEEeCCcC--ce---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEhh-----
Confidence 4789999997522 45 666999999999999999999999999999999999 99999999997763
Q ss_pred EeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 167 QEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. ...+..++|++|++. ++..++.+|+.++.... ....+++.++++.+++.+
T Consensus 66 ----------~---~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~l~~~~l~~--------- 118 (205)
T cd03226 66 ----------A---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL-----DAGNEQAETVLKDLDLYA--------- 118 (205)
T ss_pred ----------h---HHhhcceEEEecChhhhhhhccHHHHHhhhhhhc-----CccHHHHHHHHHHcCCch---------
Confidence 0 123345788999863 34458999998754311 112356778899999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
++++++.+||||||||++||||| ||||++||. +.|||++|| +++.
T Consensus 119 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 190 (205)
T cd03226 119 --------LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLA 190 (205)
T ss_pred --------hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999753 789999999 4667
Q ss_pred cccchhhHhhhhhhhc
Q 018083 298 SLTDRARIRTYLGELL 313 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv 313 (361)
.+||+++ +|++|+++
T Consensus 191 ~~~d~i~-~l~~G~iv 205 (205)
T cd03226 191 KVCDRVL-LLANGAIV 205 (205)
T ss_pred HhCCEEE-EEECCEEC
Confidence 8999996 59999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=293.03 Aligned_cols=198 Identities=12% Similarity=0.149 Sum_probs=156.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
||+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ml~~~~l~~~~~~~---~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~- 68 (271)
T PRK13638 1 MLATSDLWFRYQDE---PV---LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-----PQKGAVLWQGKPLDYS- 68 (271)
T ss_pred CeEEEEEEEEcCCc---cc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCccEEEECCEEcccc-
Confidence 58899999999753 45 666999999999999999999999999999999999 9999999999876300
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.......+..++|++|++. ++..++.+|+.++.... ........+++.++++.+++.+
T Consensus 69 ------------~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 128 (271)
T PRK13638 69 ------------KRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL-GVPEAEITRRVDEALTLVDAQH------- 128 (271)
T ss_pred ------------cCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHh-------
Confidence 0111223456788999875 23346778887653211 1222344556778899999976
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
++++++.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 129 ----------~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~ 198 (271)
T PRK13638 129 ----------FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL 198 (271)
T ss_pred ----------HhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45888999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+..+||+++ +|++|++++.|++++++..+
T Consensus 199 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 199 IYEISDAVY-VLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHhcCh
Confidence 678999996 59999999999998887653
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=289.21 Aligned_cols=211 Identities=19% Similarity=0.195 Sum_probs=161.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc---ccceeeeccccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVG 160 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p---~~G~I~i~G~~i 160 (361)
++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+.+.. | ++|+|.++|+++
T Consensus 4 ~~l~~~~l~~~~~~~---~~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 4 PILQVSDLSVYYNKK---KA---LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNI 74 (252)
T ss_pred ceEEEEeeEEEECCe---ee---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEEC
Confidence 479999999999753 45 66699999999999999999999999999999985311 5 589999999876
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
... .......+..+++++|++.+++.++.+|+.++.............+++.++++.+++.+.+
T Consensus 75 ~~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 138 (252)
T PRK14239 75 YSP-------------RTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV--- 138 (252)
T ss_pred cCc-------------ccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH---
Confidence 410 0111223456888999987776788999986543111111223445667788888875321
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--C
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 294 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~ 294 (361)
...+++.+.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 139 ----------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 208 (252)
T PRK14239 139 ----------KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQ 208 (252)
T ss_pred ----------HHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHH
Confidence 0135788999999999999999999 999999753 689999999 4
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
.+..+|||++ +|++|++++.|++++++..|.+..+
T Consensus 209 ~~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~ 243 (252)
T PRK14239 209 QASRISDRTG-FFLDGDLIEYNDTKQMFMNPKHKET 243 (252)
T ss_pred HHHHhCCEEE-EEECCEEEEeCCHHHHHhCCCCHHH
Confidence 6778999996 5999999999999999887765443
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=289.38 Aligned_cols=217 Identities=18% Similarity=0.194 Sum_probs=164.9
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+.++....|++|+|.++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 2 KIKMESKNLNLWYGEK---QA---LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred ccEEEEEEeEEEECCe---ee---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 4689999999999753 45 66699999999999999999999999999999998711000278999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. .......+..++|++|++.+++.++.+|+.++.............+++.++++.+++.+.+.
T Consensus 76 ~-------------~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 138 (251)
T PRK14270 76 K-------------DVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK---- 138 (251)
T ss_pred c-------------cccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh----
Confidence 0 01112234567889999887777888999865432111112334456677888888753110
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 296 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~ 296 (361)
..+++.+.+||+|||||++||||| ||||++||. +.|||++|| +++
T Consensus 139 ---------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~ 209 (251)
T PRK14270 139 ---------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQA 209 (251)
T ss_pred ---------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHH
Confidence 035788999999999999999999 999999753 789999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
..+|||++ +|++|++++.|++++++..+.++.+..
T Consensus 210 ~~~~d~v~-~l~~G~i~~~~~~~~~~~~~~~~~~~~ 244 (251)
T PRK14270 210 SRVSDYTA-FFLMGDLIEFNKTEKIFLEPQKKETED 244 (251)
T ss_pred HHhcCEEE-EEECCeEEEeCCHHHHhcCCCChHHHH
Confidence 78999996 599999999999999988877665443
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=280.84 Aligned_cols=187 Identities=19% Similarity=0.208 Sum_probs=145.3
Q ss_pred cccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 86 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 86 lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
|+++|++++|++.. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~~~~~i---l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~- 71 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQA---LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-----PTSGEVRVDGTDISKL- 71 (218)
T ss_pred CeEeeeEEEecCCCcceeE---EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-----CCceeEEECCEehhhc-
Confidence 57899999997521 0145 666999999999999999999999999999999999 9999999999876410
Q ss_pred EeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
+ ...... .+..++|++|++.+++. ++.+|+.++.... .......++++.++++.+++.+
T Consensus 72 -------~----~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 132 (218)
T cd03255 72 -------S----EKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA-GVPKKERRERAEELLERVGLGD------- 132 (218)
T ss_pred -------c----hhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 0 000011 23457889999887776 8999998764321 1122334567788999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 133 ----------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 202 (218)
T cd03255 133 ----------RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202 (218)
T ss_pred ----------hhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 45889999999999999999999 999999643 789999999 4
Q ss_pred ccccccchhhHhhhhhhh
Q 018083 295 DLLSLTDRARIRTYLGEL 312 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~i 312 (361)
.+. +||+++ +|++|++
T Consensus 203 ~~~-~~d~v~-~l~~G~i 218 (218)
T cd03255 203 LAE-YADRII-ELRDGKI 218 (218)
T ss_pred HHh-hhcEEE-EeeCCcC
Confidence 554 899996 5999874
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=289.02 Aligned_cols=217 Identities=18% Similarity=0.220 Sum_probs=164.9
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+.|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++...
T Consensus 3 ~~l~~~nl~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 3 NKVKLEQLNVHFGKN---HA---VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred cEEEEEEEEEEeCCe---eE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 468999999999753 45 666999999999999999999999999999999985110003689999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.......+..+++++|++.+++. ++.+|+.++.......+.....+++.++++.+++...+
T Consensus 77 -------------~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----- 138 (252)
T PRK14256 77 -------------GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV----- 138 (252)
T ss_pred -------------cCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----
Confidence 01112335568889999888775 88999986543211112233445677888888885411
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 296 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~ 296 (361)
...+++.+.+||||||||++||||| |||+++||. ++|||++|| +++
T Consensus 139 --------~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~ 210 (252)
T PRK14256 139 --------KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQA 210 (252)
T ss_pred --------hHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHH
Confidence 0034778999999999999999999 999999753 789999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
..+||+++ +|++|++++.|++++++..+.+++++.+
T Consensus 211 ~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 246 (252)
T PRK14256 211 ARVSDYTA-FFYMGDLVECGETKKIFTTPEKKQTEDY 246 (252)
T ss_pred HhhCCEEE-EEECCEEEEeCCHHHHHhCCCcHHHHHH
Confidence 78999996 5999999999999999888877665433
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=286.91 Aligned_cols=194 Identities=11% Similarity=0.164 Sum_probs=154.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~ 71 (237)
T PRK11614 3 KVMLSFDKVSAHYGKI---QA---LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR-----ATSGRIVFDGKDITD 71 (237)
T ss_pred ccEEEEEeEEEeeCCc---ee---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEecCC
Confidence 3579999999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhccccccc-CCCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~-gl~~~~~~ 239 (361)
....+ .+..+++++|++.+++. ++.+|+.++... .......+.+.++++.+ ++.+
T Consensus 72 ---------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---~~~~~~~~~~~~~l~~~~~l~~---- 129 (237)
T PRK11614 72 ---------------WQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFF---AERDQFQERIKWVYELFPRLHE---- 129 (237)
T ss_pred ---------------CCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhc---cChhHHHHHHHHHHHHHHHHHH----
Confidence 11111 23457888998887775 889998875421 11223344556666766 4655
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH- 293 (361)
..++++.+||||||||++||||| ||||++||. +.|||++||
T Consensus 130 -------------~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (237)
T PRK11614 130 -------------RRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQN 196 (237)
T ss_pred -------------HHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 34778999999999999999999 999999753 899999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+++.++|||++ +|++|+++..|++++++.
T Consensus 197 ~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 197 ANQALKLADRGY-VLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHHHhhCCEEE-EEeCCEEEeeCCHHHHhc
Confidence 46789999996 599999999999988864
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=292.35 Aligned_cols=196 Identities=18% Similarity=0.191 Sum_probs=157.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 ml~~~~l~~~~~~~~--~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 68 (274)
T PRK13644 1 MIRLENVSYSYPDGT--PA---LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-----PQKGKVLVSGIDTGD-- 68 (274)
T ss_pred CEEEEEEEEEcCCCC--ce---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEECCc--
Confidence 478999999996432 35 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCccee-eeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 165 FLQEYTIPRGSNSFS-LYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~-~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. ....+..+++++|++. ++..++.+|+.++.... ..+.....+++.++++.+++.+
T Consensus 69 -------------~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~------ 128 (274)
T PRK13644 69 -------------FSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL-CLPPIEIRKRVDRALAEIGLEK------ 128 (274)
T ss_pred -------------cccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHH------
Confidence 11 1123456888999875 33458999998754321 1233444567888899999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
..++++.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 129 -----------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~ 197 (274)
T PRK13644 129 -----------YRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE 197 (274)
T ss_pred -----------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 45889999999999999999999 999999753 899999999 4
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
.+ ..||+++ +|++|+++..|++++++..+
T Consensus 198 ~~-~~~d~v~-~l~~G~i~~~g~~~~~~~~~ 226 (274)
T PRK13644 198 EL-HDADRII-VMDRGKIVLEGEPENVLSDV 226 (274)
T ss_pred HH-hhCCEEE-EEECCEEEEECCHHHHhcCh
Confidence 55 5699996 59999999999998887654
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=288.52 Aligned_cols=212 Identities=16% Similarity=0.198 Sum_probs=164.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-----cceeeecc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNS 157 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-----~G~I~i~G 157 (361)
.++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |+ +|+|.++|
T Consensus 2 ~~~l~~~~l~~~~~~~---~i---l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~~G~v~~~g 70 (251)
T PRK14249 2 DPKIKIRGVNFFYHKH---QV---LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-----IVSGARLEGAVLLDN 70 (251)
T ss_pred CceEEEEEEEEEECCe---eE---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----ccccCCcccEEEECC
Confidence 3579999999999753 45 666999999999999999999999999999999998 65 69999999
Q ss_pred cccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 158 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 158 ~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
.++... .......+..++|++|++.+++.++.+|+.++.........+...+.+.++++.+++.+.+
T Consensus 71 ~~~~~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l 137 (251)
T PRK14249 71 ENIYSP-------------NLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV 137 (251)
T ss_pred EEcccc-------------ccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh
Confidence 776310 0111233566889999988877789999987543211111122344566667777775321
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH 293 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH 293 (361)
..++++.+.+||||||||++||||| ||||++||. ++|||++||
T Consensus 138 -------------~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh 204 (251)
T PRK14249 138 -------------KDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTH 204 (251)
T ss_pred -------------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 0145889999999999999999999 999999753 789999999
Q ss_pred --CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
.++..+||+++ +|++|+++..|++++++..|.++.+..
T Consensus 205 ~~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~ 244 (251)
T PRK14249 205 NMQQAARASDWTG-FLLTGDLVEYGRTGEIFSRPRDKRTED 244 (251)
T ss_pred CHHHHHhhCCEEE-EEeCCeEEEeCCHHHHHhCCCChHHHH
Confidence 57778999996 599999999999999988877665443
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=281.88 Aligned_cols=189 Identities=15% Similarity=0.163 Sum_probs=148.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~--~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~-- 68 (222)
T PRK10908 1 MIRFEHVSKAYLGGR--QA---LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER-----PSAGKIWFSGHDITR-- 68 (222)
T ss_pred CEEEEeeEEEecCCC--eE---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc--
Confidence 478999999994322 45 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
+. .......+..++|++|++.+++. ++.+|+.++.... .....+..+++.++++.+++.+
T Consensus 69 ------~~----~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 129 (222)
T PRK10908 69 ------LK----NREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA-GASGDDIRRRVSAALDKVGLLD-------- 129 (222)
T ss_pred ------CC----hhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 00 00011134567889998876555 8889998754311 1222344456778899999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
.+++.+.+||||||||++||||| ||||++||. +.|+|++|| +++
T Consensus 130 ---------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 200 (222)
T PRK10908 130 ---------KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLI 200 (222)
T ss_pred ---------hhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999753 789999999 567
Q ss_pred ccccchhhHhhhhhhhcC
Q 018083 297 LSLTDRARIRTYLGELLG 314 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~ 314 (361)
..+||+++ +|++|+++.
T Consensus 201 ~~~~d~i~-~l~~G~i~~ 217 (222)
T PRK10908 201 SRRSYRML-TLSDGHLHG 217 (222)
T ss_pred HHhCCEEE-EEECCEEcc
Confidence 78899996 599999865
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=306.06 Aligned_cols=227 Identities=13% Similarity=0.147 Sum_probs=189.2
Q ss_pred HHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhh
Q 018083 67 VFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 67 ~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~ 138 (361)
++-++++++++.++. ..+-++++|++|.|.++. ++ |+||||++.+|+++|||||||+||||++|+|.
T Consensus 511 nmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k--~v---l~disF~v~pGktvAlVG~SGaGKSTimRlLf 585 (790)
T KOG0056|consen 511 NMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGK--PV---LSDISFTVQPGKTVALVGPSGAGKSTIMRLLF 585 (790)
T ss_pred HHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCC--ce---eecceEEecCCcEEEEECCCCCchhHHHHHHH
Confidence 788899888887655 344699999999998875 45 77799999999999999999999999999999
Q ss_pred hhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCCh
Q 018083 139 KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSS 218 (361)
Q Consensus 139 gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~ 218 (361)
++++ .++|.|.+||+|+. .+....+|+.+|.||||..+|..+|..||.++-+ .
T Consensus 586 Rffd-----v~sGsI~iDgqdIr---------------nvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~-------~ 638 (790)
T KOG0056|consen 586 RFFD-----VNSGSITIDGQDIR---------------NVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP-------S 638 (790)
T ss_pred HHhh-----ccCceEEEcCchHH---------------HHHHHHHHHhcCcccCcceeecceeeeheeecCC-------C
Confidence 9999 99999999999997 4666778999999999999999999999997654 4
Q ss_pred hhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----
Q 018083 219 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----- 284 (361)
Q Consensus 219 ~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----- 284 (361)
+..+++.++++.+++++.+.-.+..|=.-|++. .-.||||+||||||||++ ||.||+||.
T Consensus 639 AsneevyaAAkAA~IHdrIl~fPegY~t~VGER------GLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~ 712 (790)
T KOG0056|consen 639 ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGER------GLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERA 712 (790)
T ss_pred CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhc------ccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHH
Confidence 556788888888988887644444444433333 335999999999999998 999999763
Q ss_pred ----------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 285 ----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 285 ----------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
++|-|+|.| -+-.-.||.|. ++++|+|++.|.|++++....-.|..+
T Consensus 713 IQaaL~rlca~RTtIVvAHRLSTivnAD~IL-vi~~G~IvErG~HeeLl~rdgG~Ya~M 770 (790)
T KOG0056|consen 713 IQAALARLCANRTTIVVAHRLSTIVNADLIL-VISNGRIVERGRHEELLKRDGGAYADM 770 (790)
T ss_pred HHHHHHHHhcCCceEEEeeeehheecccEEE-EEeCCeEeecCcHHHHHhccCCcHHHH
Confidence 899999999 44556799996 599999999999999988765555433
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=290.27 Aligned_cols=209 Identities=16% Similarity=0.165 Sum_probs=155.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 4 ~~~l~~~~l~~~~~~~---~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (258)
T PRK11701 4 QPLLSVRGLTKLYGPR---KG---CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-----PDAGEVHYRMRDGQL 72 (258)
T ss_pred CceEEEeeeEEEcCCc---ee---eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCccccc
Confidence 3579999999999753 45 666999999999999999999999999999999999 999999999987210
Q ss_pred ceEeEeeeecCCCcceeeee----cCCCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCc
Q 018083 163 TYFLQEYTIPRGSNSFSLYD----TRSLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 235 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d----~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~ 235 (361)
.+.. ...... .+..++|++|++. +++. ++.+|+.+.............++++.++++.+++.+
T Consensus 73 ~~i~----------~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 73 RDLY----------ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA 142 (258)
T ss_pred cccc----------cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh
Confidence 0000 011101 2345777888763 2222 555666543211111112234566778899999963
Q ss_pred ceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEE
Q 018083 236 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 289 (361)
Q Consensus 236 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvI 289 (361)
. .+++.+.+||||||||++||||| ||||++||. |.|||
T Consensus 143 ~----------------~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 206 (258)
T PRK11701 143 A----------------RIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred h----------------HHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 1 34889999999999999999999 999999642 78999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
++|| ..+..+||+++ +|++|++++.|++++++..+.+.+
T Consensus 207 ~isH~~~~~~~~~d~i~-~l~~g~i~~~~~~~~~~~~~~~~~ 247 (258)
T PRK11701 207 IVTHDLAVARLLAHRLL-VMKQGRVVESGLTDQVLDDPQHPY 247 (258)
T ss_pred EEeCCHHHHHHhcCEEE-EEECCEEEEeCCHHHHhcCCCCHH
Confidence 9999 46667899996 599999999999998887665433
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=292.46 Aligned_cols=197 Identities=17% Similarity=0.207 Sum_probs=159.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++||++.|+... ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~-~~~---l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-----p~~G~i~~~g~~i~-- 72 (279)
T PRK13635 4 EIIRVEHISFRYPDAA-TYA---LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-----PEAGTITVGGMVLS-- 72 (279)
T ss_pred ceEEEEEEEEEeCCCC-ccc---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECC--
Confidence 5799999999996422 245 666999999999999999999999999999999999 99999999998875
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH-HHH-HHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......+..++|++|++. ++. .++.+|+.++.... .....+.++++.++++.++|.+
T Consensus 73 -------------~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------ 132 (279)
T PRK13635 73 -------------EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMED------ 132 (279)
T ss_pred -------------cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC-CCCHHHHHHHHHHHHHHcCChh------
Confidence 1112233456889999974 443 48999998764321 1233445567888999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
++++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 133 -----------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~ 201 (279)
T PRK13635 133 -----------FLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL 201 (279)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 45899999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+.+. .|||++ +|++|++++.|++++++..
T Consensus 202 ~~~~-~~d~i~-~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 202 DEAA-QADRVI-VMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHH-cCCEEE-EEECCEEEEECCHHHHhcC
Confidence 4454 599996 5999999999998887664
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=289.72 Aligned_cols=198 Identities=14% Similarity=0.112 Sum_probs=157.5
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+.++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 8 ~~~~l~i~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 76 (265)
T PRK10575 8 SDTTFALRNVSFRVPGR---TL---LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-----PSEGEILLDAQPLE 76 (265)
T ss_pred CCceEEEeeEEEEECCE---EE---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEehh
Confidence 44679999999999753 45 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec---CCChhhhhhhcccccccCCCcce
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~---~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
.......+..+++++|++.+++. ++.+|+.++...... .......+++.++++.+++.+
T Consensus 77 ---------------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 139 (265)
T PRK10575 77 ---------------SWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-- 139 (265)
T ss_pred ---------------hCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH--
Confidence 11112234567888888665554 888998875321110 112234456788899999976
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 291 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIii 291 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++
T Consensus 140 ---------------~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~ 204 (265)
T PRK10575 140 ---------------LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAV 204 (265)
T ss_pred ---------------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45889999999999999999999 999999642 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
|| +.+..+||+++ +|++|++++.|+++++..
T Consensus 205 sH~~~~i~~~~d~i~-~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 205 LHDINMAARYCDYLV-ALRGGEMIAQGTPAELMR 237 (265)
T ss_pred eCCHHHHHHhCCEEE-EEECCeEEEecCHHHhcC
Confidence 99 56778999996 599999999998877654
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=301.19 Aligned_cols=195 Identities=15% Similarity=0.211 Sum_probs=159.1
Q ss_pred cceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEee
Q 018083 90 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEY 169 (361)
Q Consensus 90 nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~ 169 (361)
||+++|++. . + ++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.... .
T Consensus 4 ~l~~~~~~~--~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~i~~~~--~-- 66 (354)
T TIGR02142 4 RFSKRLGDF--S-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-----PDEGEIVLNGRTLFDSR--K-- 66 (354)
T ss_pred EEEEEECCE--E-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECccCc--c--
Confidence 789999752 2 4 5999999999999999999999999999999999 99999999998764100 0
Q ss_pred eecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEE
Q 018083 170 TIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVV 248 (361)
Q Consensus 170 ~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv 248 (361)
.......+..+++++|++.+++. ++.+|+.++... ......++++.++++.++|.+
T Consensus 67 -------~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~---~~~~~~~~~~~~~l~~~gL~~------------- 123 (354)
T TIGR02142 67 -------GIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKR---ARPSERRISFERVIELLGIGH------------- 123 (354)
T ss_pred -------ccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhc---cChhHHHHHHHHHHHHcCChh-------------
Confidence 00112234568899999988876 999999886542 122334556788999999987
Q ss_pred echhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccccccc
Q 018083 249 DGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLT 300 (361)
Q Consensus 249 ~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~a 300 (361)
++++++.+||||||||++||||| ||||++||. ++|||++|| +++..+|
T Consensus 124 ----~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~ 199 (354)
T TIGR02142 124 ----LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199 (354)
T ss_pred ----HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 45899999999999999999999 999999753 789999999 5677899
Q ss_pred chhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 301 DRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 301 Dri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
|+++ +|++|++++.|++++++..|...+
T Consensus 200 d~i~-~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 200 DRVV-VLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred CEEE-EEeCCEEEEECCHHHHhcCcCccc
Confidence 9996 599999999999999988877654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=290.61 Aligned_cols=215 Identities=19% Similarity=0.206 Sum_probs=164.3
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|++. ++ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|.++.
T Consensus 17 ~~~~l~~~nl~~~~~~~---~i---l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 17 EEIALSTKDLHVYYGKK---EA---IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CCeEEEEeeEEEEECCe---ee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 34579999999999652 45 6669999999999999999999999999999999961100047999999998763
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++............++++.++++.+++.+.+
T Consensus 91 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i---- 153 (267)
T PRK14237 91 RK-------------EINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV---- 153 (267)
T ss_pred cc-------------cCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh----
Confidence 10 0112233556888999988777799999987643211112233456677788888885421
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++++.+|||||+||++||||| |||+++||. +.|||++|| +.
T Consensus 154 ---------~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 224 (267)
T PRK14237 154 ---------KDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQ 224 (267)
T ss_pred ---------hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 0145889999999999999999999 999999753 789999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
+..+||+++ +|++|++++.|++++++..+....
T Consensus 225 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~ 257 (267)
T PRK14237 225 AARASDYTA-FFYLGDLIEYDKTRNIFTNPKLQS 257 (267)
T ss_pred HHHhcCEEE-EEECCEEEEeCCHHHHhcCCCcHH
Confidence 778999996 599999999999999887665443
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=286.80 Aligned_cols=214 Identities=21% Similarity=0.210 Sum_probs=161.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~- 74 (249)
T PRK14253 2 NKFNIENLDLFYGEN---QA---LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG- 74 (249)
T ss_pred CeEEEeccEEEECCe---ee---eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccc-
Confidence 578999999999752 45 66699999999999999999999999999999999811001258999999977530
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..++|++|++.+++.++.+|+.++............++++.++++.+++.+.+
T Consensus 75 -------------~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------ 135 (249)
T PRK14253 75 -------------NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV------ 135 (249)
T ss_pred -------------ccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh------
Confidence 0111233456788999887776788899986543211111223345566777778875421
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
...+++++.+||||||||++||||| ||||++||. +.|||++|| +.+.
T Consensus 136 -------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 208 (249)
T PRK14253 136 -------KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQAR 208 (249)
T ss_pred -------hHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Confidence 0135788999999999999999999 999999753 689999999 5678
Q ss_pred cccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
.+|||++ +|++|+++..|+++++...+.+++++
T Consensus 209 ~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~ 241 (249)
T PRK14253 209 RISDRTA-FFLMGELVEHDDTQVIFSNPKDDRTQ 241 (249)
T ss_pred HhCCEEE-EEECCEEEEeCCHHHHHcCCCChHHH
Confidence 8999996 59999999999998887766655543
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=279.81 Aligned_cols=186 Identities=17% Similarity=0.181 Sum_probs=147.7
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~--~~---l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~-- 68 (214)
T cd03292 1 IEFINVTKTYPNGT--AA---LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-----PTSGTIRVNGQDVSDL-- 68 (214)
T ss_pred CEEEEEEEEeCCCc--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcccC--
Confidence 46899999996432 35 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. .......+..+++++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 69 ------~----~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 128 (214)
T cd03292 69 ------R----GRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT-GVPPREIRKRVPAALELVGLSH--------- 128 (214)
T ss_pred ------C----HHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHH---------
Confidence 0 00111234568889999888875 8999998764321 1222344567788899999977
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 129 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 129 --------KHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred --------HhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999753 789999999 4667
Q ss_pred cccchhhHhhhhhhh
Q 018083 298 SLTDRARIRTYLGEL 312 (361)
Q Consensus 298 ~~aDri~vvl~~G~i 312 (361)
.+||+++ +|++|++
T Consensus 201 ~~~d~i~-~l~~G~~ 214 (214)
T cd03292 201 TTRHRVI-ALERGKL 214 (214)
T ss_pred HhCCEEE-EEeCCcC
Confidence 8899996 5998874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=313.02 Aligned_cols=194 Identities=15% Similarity=0.193 Sum_probs=159.0
Q ss_pred hhhhHHHHHHHHhHHHHHhh----------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcc
Q 018083 62 RRRDAVFREVLQSYDQLRTR----------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 131 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~----------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKS 131 (361)
+....|+.++++.+++.+.. ....|+++||+|+|+++. ++ |+|+||+|++|++++|+||||||||
T Consensus 301 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~--~v---L~~isl~i~~G~~vaIvG~SGsGKS 375 (529)
T TIGR02868 301 RAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSP--PV---LDGVSLDLPPGERVAILGPSGSGKS 375 (529)
T ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCC--ce---eecceEEEcCCCEEEEECCCCCCHH
Confidence 33455889988655432110 112589999999997643 35 6669999999999999999999999
Q ss_pred hhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeE
Q 018083 132 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 211 (361)
Q Consensus 132 TLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~ 211 (361)
||+++|+|+++ |++|+|.+||.++. .+ ..+.|..+++|+|++.+|+.|+.+||.++..
T Consensus 376 TLl~lL~g~~~-----p~~G~I~i~g~~i~---------------~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~- 433 (529)
T TIGR02868 376 TLLMLLTGLLD-----PLQGEVTLDGVSVS---------------SL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP- 433 (529)
T ss_pred HHHHHHhcCCC-----CCCcEEEECCEEhh---------------hH-HHHHHhheEEEccCcccccccHHHHHhccCC-
Confidence 99999999999 99999999999987 56 6778889999999999999999999997643
Q ss_pred EecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceee
Q 018083 212 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 282 (361)
Q Consensus 212 ~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L 282 (361)
+..++++.++++.+++++.+.+.++.+.+.|++ ....||||||||++||||| ||||++|
T Consensus 434 ------~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige------~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaL 501 (529)
T TIGR02868 434 ------DATDEELWAALERVGLADWLRSLPDGLDTVLGE------GGARLSGGERQRLALARALLADAPILLLDEPTEHL 501 (529)
T ss_pred ------CCCHHHHHHHHHHcCCHHHHHhCcccccchhcc------ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 334567888899999988766666777775554 3457999999999999999 9999997
Q ss_pred cC---------------CccEEEEEcC
Q 018083 283 RD---------------DKPVVVVTHG 294 (361)
Q Consensus 283 ~~---------------g~tvIiiTH~ 294 (361)
|. ++|+|+|||.
T Consensus 502 D~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 502 DAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 63 7999999994
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=325.37 Aligned_cols=226 Identities=13% Similarity=0.112 Sum_probs=178.0
Q ss_pred hhhhHHHHHHHHhHHHHHhh-------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh
Q 018083 62 RRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 134 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~-------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl 134 (361)
+....|+.++++.+++.... ....|+++|++++|++... ++ |+++||+|++|+.++|+||||||||||+
T Consensus 425 ~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~-~i---l~~i~l~i~~G~~vaivG~sGsGKSTL~ 500 (694)
T TIGR01846 425 GIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSP-EV---LSNLNLDIKPGEFIGIVGPSGSGKSTLT 500 (694)
T ss_pred HHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCCCc-cc---cccceEEECCCCEEEEECCCCCCHHHHH
Confidence 33455889988755432211 1235899999999975432 45 6669999999999999999999999999
Q ss_pred hhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec
Q 018083 135 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 214 (361)
Q Consensus 135 ~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~ 214 (361)
++|+|+++ |++|+|.+||.++. .+...+.|..+++|+|++.+|+.++.+|+.++..
T Consensus 501 ~ll~g~~~-----p~~G~I~idg~~i~---------------~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~---- 556 (694)
T TIGR01846 501 KLLQRLYT-----PQHGQVLVDGVDLA---------------IADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP---- 556 (694)
T ss_pred HHHhcCCC-----CCCceEEECCEehh---------------hCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC----
Confidence 99999999 99999999999886 4566677888999999999999999999986432
Q ss_pred CCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-
Q 018083 215 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 284 (361)
Q Consensus 215 ~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~- 284 (361)
....+++.++++.+++.+.+.+.++.+.+.++ +....||||||||++||||| ||||++||.
T Consensus 557 ---~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~------~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~ 627 (694)
T TIGR01846 557 ---GAPFEHVIHAAKLAGAHDFISELPQGYNTEVG------EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYE 627 (694)
T ss_pred ---CCCHHHHHHHHHHcChHHHHHhCcCccCcEec------CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHH
Confidence 23345666777888776644333444444333 34568999999999999999 999999763
Q ss_pred --------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 285 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 --------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
++|+|+||| ......||+|+ +|++|++++.|++++++...
T Consensus 628 ~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii-~l~~G~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 628 SEALIMRNMREICRGRTVIIIAHRLSTVRACDRII-VLEKGQIAESGRHEELLALQ 682 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEE-EEeCCEEEEeCCHHHHHHcC
Confidence 799999999 44556799995 69999999999999987653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=286.43 Aligned_cols=199 Identities=14% Similarity=0.109 Sum_probs=155.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 70 (242)
T PRK11124 2 SIQLNGINCFYGAH---QA---LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFSK 70 (242)
T ss_pred EEEEEeeEEEECCe---ee---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccccc
Confidence 57899999999753 45 666999999999999999999999999999999999 99999999998752000
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
. .. .......+..++|++|++.+++. ++.+|+.+...........+..+++.++++.+++..
T Consensus 71 ---~--~~----~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------- 133 (242)
T PRK11124 71 ---T--PS----DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-------- 133 (242)
T ss_pred ---c--cc----hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh--------
Confidence 0 00 01112334567889999887765 888998643211111222334566788899999976
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
++++.+.+||||||||++||||| ||||++||. ++|+|++|| ..+
T Consensus 134 ---------~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 204 (242)
T PRK11124 134 ---------YADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVA 204 (242)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999753 799999999 466
Q ss_pred ccccchhhHhhhhhhhcCCCCcccc
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
..+||+++ +|++|+++..|+++++
T Consensus 205 ~~~~d~i~-~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 205 RKTASRVV-YMENGHIVEQGDASCF 228 (242)
T ss_pred HHhcCEEE-EEECCEEEEeCCHHHh
Confidence 68899996 5999999999988765
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=289.13 Aligned_cols=211 Identities=18% Similarity=0.182 Sum_probs=159.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+++++|++++|++. ++ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|.++...
T Consensus 4 ~l~i~~v~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~- 76 (258)
T PRK14241 4 RIDVKDLNIYYGSF---HA---VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGP- 76 (258)
T ss_pred cEEEeeEEEEECCE---ee---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccc-
Confidence 68999999999753 45 666999999999999999999999999999999997211112799999999876310
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..+++++|++.+++. ++.+|+.++............++++.++++.+++.+.+
T Consensus 77 ------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 138 (258)
T PRK14241 77 ------------GVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV------ 138 (258)
T ss_pred ------------ccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh------
Confidence 01112234568889998877775 88899876543211112234456677888888885311
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
...+++.+.+||||||||++||||| ||||++||. ++|||++|| +++.
T Consensus 139 -------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~ 211 (258)
T PRK14241 139 -------KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAA 211 (258)
T ss_pred -------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 0135788999999999999999999 999999753 689999999 4677
Q ss_pred cccchhhHhhh------hhhhcCCCCccccccCCCCC
Q 018083 298 SLTDRARIRTY------LGELLGIPPAKQIFDIPESS 328 (361)
Q Consensus 298 ~~aDri~vvl~------~G~iv~~g~~~~i~~~~~~~ 328 (361)
.+|||++ +|+ +|++++.|++++++..+...
T Consensus 212 ~~~d~i~-~l~~~~~~~~g~i~~~~~~~~~~~~~~~~ 247 (258)
T PRK14241 212 RVSDQTA-FFNLEATGKPGRLVEIDDTEKIFSNPTQK 247 (258)
T ss_pred HhCCEEE-EEecccCCCCceEEecCCHHHHHhCcCcH
Confidence 8999996 485 79999999999887765443
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=287.82 Aligned_cols=214 Identities=16% Similarity=0.207 Sum_probs=161.1
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|+.. ++ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~---~~---l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGNY---EA---LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECCe---ee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 478999999999753 45 666999999999999999999999999999999986100003799999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..+++++|++.+++.++.+|+.++............++++.++++.+++....
T Consensus 77 -------------~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 137 (251)
T PRK14251 77 -------------KMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET------ 137 (251)
T ss_pred -------------cchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch------
Confidence 0111223456788888887776688899876543111111223345667788888884210
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
...+++.+.+||||||||++||||| |||+++||. +.|||++|| .++.
T Consensus 138 -------~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~ 210 (251)
T PRK14251 138 -------KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAG 210 (251)
T ss_pred -------HHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHH
Confidence 0034788999999999999999999 999999753 789999999 5677
Q ss_pred cccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
.+|||++ +|++|+++..|++++++..+.+..+
T Consensus 211 ~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~ 242 (251)
T PRK14251 211 RISDQTA-FLMNGDLIEAGPTEEMFIAPKKQIT 242 (251)
T ss_pred hhcCEEE-EEECCEEEEeCCHHHHHhCCCCHHH
Confidence 8999996 5999999999999998877765543
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=286.21 Aligned_cols=197 Identities=14% Similarity=0.196 Sum_probs=155.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~- 71 (255)
T PRK11300 4 PLLSVSGLMMRFGGL---LA---VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-----PTGGTILLRGQHIEG- 71 (255)
T ss_pred ceEEEeeEEEEECCE---EE---EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCcceEEECCEECCC-
Confidence 479999999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEE---------ec---CC--Chhhhhhhccc
Q 018083 164 YFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVI---------RR---SD--SSSLRNRMRCK 227 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~---------~~---~~--~~~~~~~v~~~ 227 (361)
..... .+..++|++|++.+++. ++.+|+.++.... .. .. ..+..+++.++
T Consensus 72 --------------~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (255)
T PRK11300 72 --------------LPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATW 137 (255)
T ss_pred --------------CCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHH
Confidence 11111 12346778898887776 8889988653210 00 00 11223456778
Q ss_pred ccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--------------
Q 018083 228 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------- 284 (361)
Q Consensus 228 l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------- 284 (361)
++.+++.+ ++++++.+||||||||++||||| ||||++||.
T Consensus 138 l~~~gl~~-----------------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~ 200 (255)
T PRK11300 138 LERVGLLE-----------------HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELR 200 (255)
T ss_pred HHhCChhh-----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 88999976 45899999999999999999999 999999652
Q ss_pred ---CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ---DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ---g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|||++|| +++..+||+++ +|++|+++..|++++++..
T Consensus 201 ~~~~~tii~~sH~~~~~~~~~d~i~-~l~~g~i~~~~~~~~~~~~ 244 (255)
T PRK11300 201 NEHNVTVLLIEHDMKLVMGISDRIY-VVNQGTPLANGTPEEIRNN 244 (255)
T ss_pred hhcCCEEEEEeCCHHHHHHhCCEEE-EEECCeEEecCCHHHHhhC
Confidence 789999999 56778999996 5999999999998877653
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=289.87 Aligned_cols=200 Identities=17% Similarity=0.229 Sum_probs=159.5
Q ss_pred ccccccccceeeecCcc---eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 83 GSLTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~---~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
.++|+++|++++|++.. ...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~v---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~ 73 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLA---LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-----PSEGKVYVDGLD 73 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEe
Confidence 35799999999996421 1246 666999999999999999999999999999999999 999999999987
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
+.. .-.....+..+++++|++. ++..++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 74 i~~--------------~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~-- 136 (280)
T PRK13633 74 TSD--------------EENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL-GIPPEEIRERVDESLKKVGMYE-- 136 (280)
T ss_pred ccc--------------cccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc-CCCHHHHHHHHHHHHHHCCCHh--
Confidence 641 0011233556889999874 34447888988764321 2233455667888999999987
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 291 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIii 291 (361)
++++++.+||||||||++||||| |||+++||. |.|||++
T Consensus 137 ---------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillv 201 (280)
T PRK13633 137 ---------------YRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILI 201 (280)
T ss_pred ---------------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45899999999999999999999 999999653 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|| +.+.. ||+++ +|++|+++..|++++++..
T Consensus 202 tH~~~~~~~-~d~v~-~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 202 THYMEEAVE-ADRII-VMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred ecChHHHhc-CCEEE-EEECCEEEEecCHHHHhcC
Confidence 99 45544 99996 5999999999999888764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=281.79 Aligned_cols=192 Identities=16% Similarity=0.219 Sum_probs=156.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|+.. ..++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~~--------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 65 (232)
T PRK10771 1 MLKLTDITWLYHHL--------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT-----PASGSLTLNGQDHTT-- 65 (232)
T ss_pred CeEEEEEEEEECCc--------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCeecCc--
Confidence 47899999999642 235999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.. ..+..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 66 -------------~~--~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 121 (232)
T PRK10771 66 -------------TP--PSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG-LKLNAAQREKLHAIARQMGIED-------- 121 (232)
T ss_pred -------------CC--hhhccEEEEecccccccCCcHHHHHhcccccc-cCCCHHHHHHHHHHHHHcCcHH--------
Confidence 10 012457888999887775 8999998754211 1112234567888999999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| |||+++||. ++|||++|| ++
T Consensus 122 ---------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 192 (232)
T PRK10771 122 ---------LLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED 192 (232)
T ss_pred ---------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 45899999999999999999999 999999753 689999999 45
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+..+||+++ +|++|++++.|++++++..+
T Consensus 193 ~~~~~d~i~-~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 193 AARIAPRSL-VVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHhCh
Confidence 678999996 59999999999988887654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=278.51 Aligned_cols=180 Identities=13% Similarity=0.150 Sum_probs=147.1
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~--- 66 (208)
T cd03268 1 LKTNDLTKTYGKK---RV---LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-----PDSGEITFDGKSYQK--- 66 (208)
T ss_pred CEEEEEEEEECCe---Ee---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCCcccc---
Confidence 5789999999652 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. .+.+..+++++|++.+++. ++.+|+.++..... ...+++.++++.+++.+
T Consensus 67 ------------~--~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~l~~~~l~~--------- 118 (208)
T cd03268 67 ------------N--IEALRRIGALIEAPGFYPNLTARENLRLLARLLG-----IRKKRIDEVLDVVGLKD--------- 118 (208)
T ss_pred ------------h--HHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC-----CcHHHHHHHHHHcCCHH---------
Confidence 1 1234557888998877765 89999876543111 12456777889999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
.+++++.+||||||||++||||| ||||++||. ++|+|++|| +++.
T Consensus 119 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 190 (208)
T cd03268 119 --------SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQ 190 (208)
T ss_pred --------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 45889999999999999999999 999999753 789999999 4667
Q ss_pred cccchhhHhhhhhhhcCCC
Q 018083 298 SLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g 316 (361)
.+||+++ +|++|++++.|
T Consensus 191 ~~~d~v~-~l~~g~i~~~g 208 (208)
T cd03268 191 KVADRIG-IINKGKLIEEG 208 (208)
T ss_pred HhcCEEE-EEECCEEEecC
Confidence 8899996 59999987654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=265.70 Aligned_cols=203 Identities=16% Similarity=0.159 Sum_probs=174.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++++++.|+.. ++ |.||+|+-++||++.++||||+|||||++.|+-+.- |.+|+..+.|...+
T Consensus 3 irv~~in~~yg~~---q~---lfdi~l~~~~getlvllgpsgagkssllr~lnlle~-----p~sg~l~ia~~~fd---- 67 (242)
T COG4161 3 IQLNGINCFYGAH---QA---LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFD---- 67 (242)
T ss_pred eEEcccccccccc---hh---eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC-----CCCCeEEecccccc----
Confidence 7899999999874 56 777999999999999999999999999999999888 99999999886543
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
+......-...++|..+|+|||...+.|. ++.+|+........+..+++.+.++.++|+.+.+.+
T Consensus 68 -----~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~--------- 133 (242)
T COG4161 68 -----FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP--------- 133 (242)
T ss_pred -----cccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc---------
Confidence 11111123455778889999999999999 999999877665556777888889999999999998
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
+++++|-.|||||+||++||||| ||||++||+ |.|-+++|| +.+.
T Consensus 134 --------~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~ 205 (242)
T COG4161 134 --------YADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVAR 205 (242)
T ss_pred --------ccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHH
Confidence 56999999999999999999998 999999875 899999999 6778
Q ss_pred cccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
+.|.+++ .|++|+|++.|++. -|.+|..
T Consensus 206 k~as~vv-yme~g~ive~g~a~-~ft~p~t 233 (242)
T COG4161 206 KTASRVV-YMENGHIVEQGDAS-CFTEPQT 233 (242)
T ss_pred hhhhheE-eeecCeeEeecchh-hccCccH
Confidence 9999996 59999999999985 4566654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=321.60 Aligned_cols=228 Identities=14% Similarity=0.175 Sum_probs=170.1
Q ss_pred hccccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 82 IGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
.+++|+++||++.|+... ..++ |++|||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..+
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~---l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-----p~~G~i~~~g~~~ 80 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAA---VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-----QAGGLVQCDKMLL 80 (623)
T ss_pred CCceEEEeceEEEecCCCCceeE---EEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCeEEEECCEEe
Confidence 456899999999996321 1356 566999999999999999999999999999999999 9999999998754
Q ss_pred CcceEeEeeeecCCCcceeeeecC-CCCcccccch--HHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcc
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNI--NMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~--~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
...- .....+.. .........+ ..+++|+|++ .+++. ++.+|+.+++..+...+..+.++++.++++.+||.+.
T Consensus 81 ~~~~-~~~~~~~~-~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRS-RQVIELSE-QSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred cccc-cccccccc-CCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh
Confidence 2100 00000000 0000111222 3689999987 45554 8999998875422122334556788899999999641
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 290 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIi 290 (361)
...+++++++||||||||++||||| ||||++||. |+|||+
T Consensus 159 --------------~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~ 224 (623)
T PRK10261 159 --------------QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIF 224 (623)
T ss_pred --------------hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0145899999999999999999999 999999753 789999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
||| +.+..+||||+ +|++|++++.|++++++..|.+.++..++
T Consensus 225 itHdl~~~~~~adri~-vl~~G~i~~~g~~~~~~~~~~~~~~~~l~ 269 (623)
T PRK10261 225 ITHDMGVVAEIADRVL-VMYQGEAVETGSVEQIFHAPQHPYTRALL 269 (623)
T ss_pred EcCCHHHHHHhCCEEE-EeeCCeecccCCHHHhhcCCCChhhhhhh
Confidence 999 57789999996 59999999999999998877766654444
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=287.28 Aligned_cols=211 Identities=17% Similarity=0.219 Sum_probs=159.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~ 75 (250)
T PRK14262 2 PIIEIENFSAYYGEK---KA---VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP 75 (250)
T ss_pred ceEEEEeeEEEeCCc---ee---EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 579999999999753 45 666999999999999999999999999999999987110012899999999776410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..+++++|++.+++.++.+|+.++............++++.++++.+++...+
T Consensus 76 -------------~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 136 (250)
T PRK14262 76 -------------QLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV------ 136 (250)
T ss_pred -------------hhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh------
Confidence 0111223456788899887776788899886542111111223445667788888886421
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
...+++.+.+|||||+||++||||| ||||++||. ++|||++|| +.+.
T Consensus 137 -------~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~ 209 (250)
T PRK14262 137 -------KSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAI 209 (250)
T ss_pred -------HHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 0135888999999999999999999 999999753 789999999 4577
Q ss_pred cccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
.+||+++ +|++|+++..|+++++...+.+
T Consensus 210 ~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~ 238 (250)
T PRK14262 210 RIADYIA-FMYRGELIEYGPTREIVERPKN 238 (250)
T ss_pred HhCCEEE-EEECCEEEEecCHHHHHhCCCC
Confidence 8999996 5999999999999888765543
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=282.95 Aligned_cols=193 Identities=13% Similarity=0.152 Sum_probs=153.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~i~~-- 67 (236)
T TIGR03864 1 ALEVAGLSFAYGAR---RA---LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV-----AQEGQISVAGHDLRR-- 67 (236)
T ss_pred CEEEEeeEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEccc--
Confidence 47899999999753 45 666999999999999999999999999999999999 999999999977641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
... ..+..++|++|++.+++. ++.+|+.+..... ........+++.++++.+++.+
T Consensus 68 -------------~~~-~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~-------- 124 (236)
T TIGR03864 68 -------------APR-AALARLGVVFQQPTLDLDLSVRQNLRYHAALH-GLSRAEARERIAALLARLGLAE-------- 124 (236)
T ss_pred -------------CCh-hhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 010 112357788888766544 8888887643211 1122334556778899999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
.+++.+.+||||||||++||||| |||+++||. +.|||++|| ++
T Consensus 125 ---------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 195 (236)
T TIGR03864 125 ---------RADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE 195 (236)
T ss_pred ---------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 45889999999999999999999 999999642 789999999 45
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+. .||+++ +|++|+++..+++++++..
T Consensus 196 ~~-~~d~i~-~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 196 IE-ADDRLV-VLHRGRVLADGAAAELRGA 222 (236)
T ss_pred Hh-hCCEEE-EEeCCeEEEeCCHHHHHHH
Confidence 54 599996 5999999999988877654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=278.26 Aligned_cols=185 Identities=19% Similarity=0.216 Sum_probs=147.2
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~---~~---l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 67 (213)
T cd03262 1 IEIKNLHKSFGDF---HV---LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-----PDSGTIIIDGLKLTDD-- 67 (213)
T ss_pred CEEEEEEEEECCe---Ee---ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCcc--
Confidence 5789999999753 45 666999999999999999999999999999999999 9999999999876310
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.......+..++|++|++.+++. ++.+|+.++.......+.....+++.++++.+++.+
T Consensus 68 -----------~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 127 (213)
T cd03262 68 -----------KKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD--------- 127 (213)
T ss_pred -----------chhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh---------
Confidence 01112334568889999887765 889998775321111222334566788899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
.+++++.+|||||+||++||||| ||||++||. ++|||++|| +++.
T Consensus 128 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~ 199 (213)
T cd03262 128 --------KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAR 199 (213)
T ss_pred --------HhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45899999999999999999999 999999753 789999999 5677
Q ss_pred cccchhhHhhhhhhh
Q 018083 298 SLTDRARIRTYLGEL 312 (361)
Q Consensus 298 ~~aDri~vvl~~G~i 312 (361)
.+||+++ +|++|++
T Consensus 200 ~~~d~i~-~l~~g~i 213 (213)
T cd03262 200 EVADRVI-FMDDGRI 213 (213)
T ss_pred HhCCEEE-EEeCCcC
Confidence 8999996 5998874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=286.82 Aligned_cols=195 Identities=15% Similarity=0.110 Sum_probs=155.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~---~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~--- 67 (255)
T PRK11231 2 TLRTENLTVGYGTK---RI---LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT-----PQSGTVFLGDKPIS--- 67 (255)
T ss_pred EEEEEeEEEEECCE---EE---EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCcEEEECCEEhH---
Confidence 58999999999753 45 666999999999999999999999999999999999 99999999997654
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEE---ecCCChhhhhhhcccccccCCCcceeEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~---~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.....+.+..++|++|+..+++. ++.+|+.++.... .........+++.++++.+++.+
T Consensus 68 ------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 130 (255)
T PRK11231 68 ------------MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH----- 130 (255)
T ss_pred ------------HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-----
Confidence 11112234457888888776655 7889887653211 01112334456778899999976
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
++++++.+|||||+||++||||| ||||++||. ++|||++||
T Consensus 131 ------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~ 198 (255)
T PRK11231 131 ------------LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL 198 (255)
T ss_pred ------------HHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45889999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+++..+||+++ +|++|+++..|++++++.
T Consensus 199 ~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 199 NQASRYCDHLV-VLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCEEE-EEECCeEEEEcCHHHhcC
Confidence 56778999996 599999999888877654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=279.82 Aligned_cols=195 Identities=16% Similarity=0.199 Sum_probs=144.5
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+|+++|++++|++.. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 72 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKA---LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-----PTSGSIIFDGKDLLKL 72 (228)
T ss_pred CeEEEeeeEeccCCCcceee---ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccc
Confidence 478999999996531 0135 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH--HHH-HHHHhccccceeEEecCCChhhhhh-hcccccccCCCcceeE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIK-LWIMEGVRHGELVIRRSDSSSLRNR-MRCKAHKIGCEPSVIR 239 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~-~ti~~ni~~~~~~~~~~~~~~~~~~-v~~~l~~~gl~~~~~~ 239 (361)
. .......+..++|++|++. +++ .++.+|+.++.............++ +.++++.+++...
T Consensus 73 --------~----~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--- 137 (228)
T cd03257 73 --------S----RRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEE--- 137 (228)
T ss_pred --------c----hhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChh---
Confidence 0 0001233456888899873 333 3788888765332111111111122 2467888888521
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH 293 (361)
++++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 138 -------------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 204 (228)
T cd03257 138 -------------VLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITH 204 (228)
T ss_pred -------------HhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 35889999999999999999999 999999642 789999999
Q ss_pred --CccccccchhhHhhhhhhhcCCC
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g 316 (361)
+.+..+||+++ +|++|+++..|
T Consensus 205 ~~~~~~~~~d~i~-~l~~G~i~~~g 228 (228)
T cd03257 205 DLGVVAKIADRVA-VMYAGKIVEEG 228 (228)
T ss_pred CHHHHHHhcCeEE-EEeCCEEEecC
Confidence 46667899996 59999987654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=279.01 Aligned_cols=184 Identities=14% Similarity=0.105 Sum_probs=148.9
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. ++ |+++||+|++| +++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 i~~~~~~~~~~~~---~~---l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~---- 64 (211)
T cd03264 1 LQLENLTKRYGKK---RA---LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-----PSSGTIRIDGQDVL---- 64 (211)
T ss_pred CEEEEEEEEECCE---EE---EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCCccc----
Confidence 5789999999653 45 66699999999 999999999999999999999999 99999999998764
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
... ...+..+++++|++.+++. ++.+|+.+..... ..+..+..+++.++++.+++.+
T Consensus 65 -----------~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (211)
T cd03264 65 -----------KQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLELVNLGD--------- 122 (211)
T ss_pred -----------cch-HHHHhheEEecCCCcccccCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCHH---------
Confidence 111 2335567889999887776 8889987643211 1222334567788899999986
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~ 298 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++|| +.+..
T Consensus 123 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~ 194 (211)
T cd03264 123 --------RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES 194 (211)
T ss_pred --------HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 45889999999999999999999 999999753 789999999 45668
Q ss_pred ccchhhHhhhhhhhcCCC
Q 018083 299 LTDRARIRTYLGELLGIP 316 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g 316 (361)
+|||++ +|++|++++.|
T Consensus 195 ~~d~i~-~l~~g~i~~~g 211 (211)
T cd03264 195 LCNQVA-VLNKGKLVFEG 211 (211)
T ss_pred hCCEEE-EEECCEEEecC
Confidence 899996 59999987654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=286.30 Aligned_cols=181 Identities=13% Similarity=0.149 Sum_probs=150.5
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 10 ~~~l~i~~l~~~~~~~---~i---l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~- 77 (257)
T PRK11247 10 GTPLLLNAVSKRYGER---TV---LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-----PSAGELLAGTAPLA- 77 (257)
T ss_pred CCcEEEEEEEEEECCc---ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEHH-
Confidence 4579999999999753 45 666999999999999999999999999999999999 99999999886542
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
..+..++|++|++.+++. ++.+|+.++.. ....+++.++++.+++.+
T Consensus 78 -------------------~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~------ 125 (257)
T PRK11247 78 -------------------EAREDTRLMFQDARLLPWKKVIDNVGLGLK-------GQWRDAALQALAAVGLAD------ 125 (257)
T ss_pred -------------------HhhCceEEEecCccCCCCCcHHHHHHhccc-------chHHHHHHHHHHHcCChh------
Confidence 123457788888877764 89999886532 112456778899999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 126 -----------~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~ 194 (257)
T PRK11247 126 -----------RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV 194 (257)
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45889999999999999999999 999999752 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCcc
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAK 319 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~ 319 (361)
..+..+||+++ +|++|+++..++.+
T Consensus 195 ~~~~~~~d~i~-~l~~G~i~~~~~~~ 219 (257)
T PRK11247 195 SEAVAMADRVL-LIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHhCCEEE-EEECCEEEeecccc
Confidence 45678999996 59999999887764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=287.65 Aligned_cols=199 Identities=14% Similarity=0.138 Sum_probs=157.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|++.. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 5 ~~~l~i~~l~~~~~~~~-~~~---l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~- 74 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDA-SFT---LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-----VKSGEIFYNNQAIT- 74 (269)
T ss_pred CceEEEEEEEEEcCCCC-Ccc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC-
Confidence 45799999999997532 135 666999999999999999999999999999999999 99999999998764
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH-HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.......+..++|++|++. +++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 75 --------------~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----- 134 (269)
T PRK13648 75 --------------DDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLE----- 134 (269)
T ss_pred --------------cCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 1122234556888999874 4443 6778887654311 1122334556778899999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||+|||||++||||| ||||++||. ++|||++||
T Consensus 135 ------------~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~ 202 (269)
T PRK13648 135 ------------RADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202 (269)
T ss_pred ------------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45889999999999999999999 999999653 689999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+. .|||++ +|++|++++.|+++++...+
T Consensus 203 ~~~~~-~~d~i~-~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 203 LSEAM-EADHVI-VMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred chHHh-cCCEEE-EEECCEEEEecCHHHHhcCH
Confidence 4555 499996 59999999999998887653
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=317.92 Aligned_cols=229 Identities=10% Similarity=0.121 Sum_probs=175.7
Q ss_pred hhhhhhhHHHHHHHHhHHHHHh---------hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCC
Q 018083 59 VDQRRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 129 (361)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~---------~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSG 129 (361)
...+....|+.++++.+++... .....|+++|++++|+......+ |+++||+|++||.++|+||||||
T Consensus 302 ~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~i---L~~inl~i~~Ge~i~IvG~sGsG 378 (576)
T TIGR02204 302 QRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPA---LDGLNLTVRPGETVALVGPSGAG 378 (576)
T ss_pred HHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCcc---ccceeEEecCCCEEEEECCCCCC
Confidence 3444455688888865433110 01235899999999975321235 66699999999999999999999
Q ss_pred cchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccce
Q 018083 130 KSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE 209 (361)
Q Consensus 130 KSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~ 209 (361)
||||+++|+|+++ |++|+|.++|.++. .+...+.+..++|++|++.+|..++.+|+.++.
T Consensus 379 KSTLlklL~gl~~-----p~~G~I~i~g~~i~---------------~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~ 438 (576)
T TIGR02204 379 KSTLFQLLLRFYD-----PQSGRILLDGVDLR---------------QLDPAELRARMALVPQDPVLFAASVMENIRYGR 438 (576)
T ss_pred HHHHHHHHHhccC-----CCCCEEEECCEEHH---------------hcCHHHHHHhceEEccCCccccccHHHHHhcCC
Confidence 9999999999999 99999999998876 345556677899999999999999999998754
Q ss_pred eEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCce
Q 018083 210 LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYL 280 (361)
Q Consensus 210 ~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~ 280 (361)
. +...+++.++++.+++.+.+.+.++.+.+.+ ......||||||||++||||+ ||||+
T Consensus 439 ~-------~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i------~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts 505 (576)
T TIGR02204 439 P-------DATDEEVEAAARAAHAHEFISALPEGYDTYL------GERGVTLSGGQRQRIAIARAILKDAPILLLDEATS 505 (576)
T ss_pred C-------CCCHHHHHHHHHHcCcHHHHHhCCCCCCcee------CCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCccc
Confidence 3 2234567777888887654332233333322 233557999999999999999 99999
Q ss_pred eecC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 281 SFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 281 ~L~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+ ++|+|+||| ....+.||+++ ++++|++++.|++++++..
T Consensus 506 ~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi-~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 506 ALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIV-VMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE-EEECCEEEeeecHHHHHHc
Confidence 9763 799999999 56667899995 6999999999999887553
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=294.96 Aligned_cols=193 Identities=13% Similarity=0.153 Sum_probs=160.2
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.++++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~---~~---l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-----~~~G~i~i~g~~~~~-- 68 (301)
T TIGR03522 2 SIRVSSLTKLYGTQ---NA---LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-----PDSGSVQVCGEDVLQ-- 68 (301)
T ss_pred EEEEEEEEEEECCE---EE---EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc--
Confidence 47899999999753 46 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.....+..++|++|++.+++. ++.+|+.+..... ..+..+..+++.++++.++|.+
T Consensus 69 --------------~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~-------- 125 (301)
T TIGR03522 69 --------------NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY-GMKGQLLKQRVEEMIELVGLRP-------- 125 (301)
T ss_pred --------------ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCch--------
Confidence 111335568899999887776 8999987643211 1223444567888999999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
.+++++..||||||||++||||| ||||++||. ++|||++|| +++.
T Consensus 126 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 126 ---------EQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE 196 (301)
T ss_pred ---------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 45889999999999999999999 999999753 789999999 5788
Q ss_pred cccchhhHhhhhhhhcCCCCcccccc
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
.+|||++ +|++|+++..|+++++..
T Consensus 197 ~~~d~i~-~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 197 AICDRVI-IINKGKIVADKKLDELSA 221 (301)
T ss_pred HhCCEEE-EEECCEEEEeCCHHHHHH
Confidence 9999996 599999999999988754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=278.01 Aligned_cols=182 Identities=14% Similarity=0.148 Sum_probs=147.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (210)
T cd03269 1 LEVENVTKRFGRV---TA---LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-----PDSGEVLFDGKPLDI--- 66 (210)
T ss_pred CEEEEEEEEECCE---EE---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCCchhH---
Confidence 5789999999752 45 666999999999999999999999999999999999 999999999987640
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
..+..+++++|++.+++. ++.+|+.+..... ........+++.++++.+++.+
T Consensus 67 ----------------~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 120 (210)
T cd03269 67 ----------------AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK-GLKKEEARRRIDEWLERLELSE--------- 120 (210)
T ss_pred ----------------HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCChH---------
Confidence 123456778888777665 8888887643211 1222344567888899999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++|| +++.
T Consensus 121 --------~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~ 192 (210)
T cd03269 121 --------YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVE 192 (210)
T ss_pred --------HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 45888999999999999999999 999999753 789999999 4667
Q ss_pred cccchhhHhhhhhhhcCCC
Q 018083 298 SLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g 316 (361)
.+||+++ +|++|++++.|
T Consensus 193 ~~~d~i~-~l~~g~i~~~~ 210 (210)
T cd03269 193 ELCDRVL-LLNKGRAVLYG 210 (210)
T ss_pred HhhhEEE-EEeCCEEEecC
Confidence 8899996 59999987653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=287.88 Aligned_cols=199 Identities=14% Similarity=0.211 Sum_probs=158.3
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++++++|+++.|+++. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 5 ~~~l~~~nl~~~~~~~~-~~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~- 74 (271)
T PRK13632 5 SVMIKVENVSFSYPNSE-NNA---LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-----PQSGEIKIDGITIS- 74 (271)
T ss_pred ceEEEEEeEEEEcCCCC-ccc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecC-
Confidence 35799999999996322 245 666999999999999999999999999999999999 99999999998764
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH-HHH-HHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.......+..++|++|++. .+. .++.+|+.++.... .......++++.++++.+++.+
T Consensus 75 --------------~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----- 134 (271)
T PRK13632 75 --------------KENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK-KVPPKKMKDIIDDLAKKVGMED----- 134 (271)
T ss_pred --------------cCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCHH-----
Confidence 1111233556889999974 343 48999998754311 1223344556788899999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
.+++++.+||||||||++||||| |||+++||. ++|||++||
T Consensus 135 ------------~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 202 (271)
T PRK13632 135 ------------YLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202 (271)
T ss_pred ------------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEec
Confidence 45899999999999999999999 999999753 489999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+ ..||+++ +|++|+++..|++++++..+
T Consensus 203 ~~~~-~~~d~v~-~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 203 MDEA-ILADKVI-VFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred hhHH-hhCCEEE-EEECCEEEEecCHHHHhcCH
Confidence 344 4799996 59999999999888876654
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=288.13 Aligned_cols=215 Identities=18% Similarity=0.199 Sum_probs=162.9
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++.
T Consensus 10 ~~~~l~i~nl~~~~~~~---~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 10 KNIIISLQNVTISYGTF---EA---VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred CCceEEEEeEEEEECCE---EE---EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 34579999999999753 45 5669999999999999999999999999999999861110148999999998763
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .....+.+..++|++|++.+++.++.+|+.++..... .. ...++++.++++.+++...+
T Consensus 84 ~~-------------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~l---- 144 (269)
T PRK14259 84 DP-------------RVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARING-YT-GDMDELVERSLRKAAVWDEC---- 144 (269)
T ss_pred cc-------------cCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcC-Cc-HHHHHHHHHHHHHhCCcchh----
Confidence 00 0111233456889999988777799999987653211 11 22345566677777764211
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++++.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 145 ---------~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~ 215 (269)
T PRK14259 145 ---------KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQ 215 (269)
T ss_pred ---------hhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 0135788999999999999999999 999999753 689999999 57
Q ss_pred cccccchhhHhhhh-----------hhhcCCCCccccccCCCCCCCC
Q 018083 296 LLSLTDRARIRTYL-----------GELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 296 ~~~~aDri~vvl~~-----------G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
+..+||+++ +|++ |++++.|++++++..+.++++.
T Consensus 216 ~~~~~d~i~-~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~ 261 (269)
T PRK14259 216 AVRVSDMTA-FFNAEEVEGGSGGKVGYLVEFNETKKIFNSPKQKATQ 261 (269)
T ss_pred HHHhcCEEE-EEeccccccccccccceEEEeCCHHHHHhCcCChHHH
Confidence 789999996 5986 6689999999999887765543
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=316.40 Aligned_cols=224 Identities=13% Similarity=0.115 Sum_probs=174.3
Q ss_pred hhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhh
Q 018083 64 RDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 137 (361)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I 137 (361)
...|+.++++.+++.... ..+.+++++++++|+... ..+ |+++||+|++|++++|+||||||||||+++|
T Consensus 286 a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~-~~~---l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll 361 (569)
T PRK10789 286 AYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTD-HPA---LENVNFTLKPGQMLGICGPTGSGKSTLLSLI 361 (569)
T ss_pred HHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCCC-Ccc---ccCeeEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 344888888654432111 123589999999997532 245 5669999999999999999999999999999
Q ss_pred hhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCC
Q 018083 138 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 217 (361)
Q Consensus 138 ~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~ 217 (361)
+|+++ |++|+|.++|+++. .+...+.+..+++++|++.+|..++.+|+.++..
T Consensus 362 ~g~~~-----p~~G~i~~~g~~~~---------------~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~------- 414 (569)
T PRK10789 362 QRHFD-----VSEGDIRFHDIPLT---------------KLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP------- 414 (569)
T ss_pred hcccC-----CCCCEEEECCEEHh---------------hCCHHHHHhheEEEccCCeeccccHHHHHhcCCC-------
Confidence 99999 99999999998875 3444566778999999999999999999987533
Q ss_pred hhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----
Q 018083 218 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 284 (361)
Q Consensus 218 ~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---- 284 (361)
....+++.++++.+++.+.+.+.++.+.+.+ .+....||||||||++||||| ||||++||.
T Consensus 415 ~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~------~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~ 488 (569)
T PRK10789 415 DATQQEIEHVARLASVHDDILRLPQGYDTEV------GERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEH 488 (569)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcCccccee------cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHH
Confidence 1233456666777777654433344444433 334568999999999999999 999999763
Q ss_pred -----------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 285 -----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 -----------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
++|+|+||| ......||+++ +|++|++++.|++++++...
T Consensus 489 ~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 489 QILHNLRQWGEGRTVIISAHRLSALTEASEIL-VMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred HHHHHHHHHhCCCEEEEEecchhHHHcCCEEE-EEeCCEEEEecCHHHHHHcC
Confidence 799999999 44556799995 69999999999999887643
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=285.60 Aligned_cols=216 Identities=20% Similarity=0.208 Sum_probs=162.5
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+.+.....+++|+|.++|+++..
T Consensus 4 ~~~i~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 4 EIILSTKNLNLWYGEK---HA---LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred cceEEEeeeEEEECCe---ee---eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 4579999999999753 45 66699999999999999999999999999999997511000248999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. .......+..++|++|++.+++.++.+|+.++............++.+.++++.+++.+.+
T Consensus 78 ~-------------~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l----- 139 (253)
T PRK14261 78 S-------------GADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV----- 139 (253)
T ss_pred c-------------ccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-----
Confidence 0 0011233456888999987777799999987643211111223345667778888775311
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 296 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~ 296 (361)
...+++.+.+||||||||++||||| |||+++||. ++|||++|| ..+
T Consensus 140 --------~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~ 211 (253)
T PRK14261 140 --------KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQA 211 (253)
T ss_pred --------HHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHH
Confidence 0034788999999999999999999 999999753 689999999 467
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
..+||+++ +|++|+++..|++++++..+.++.++
T Consensus 212 ~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~~~ 245 (253)
T PRK14261 212 ARVSDYTG-FMYLGKLIEFDKTTQIFENPHEELTE 245 (253)
T ss_pred HhhCCEEE-EEECCEEEEcCCHHHHHhCCCcHHHH
Confidence 78999996 59999999999999988776554443
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=275.88 Aligned_cols=179 Identities=16% Similarity=0.233 Sum_probs=141.9
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 ~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~----- 64 (213)
T cd03235 1 EVEDLTVSYGGH---PV---LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-----PTSGSIRVFGKPLE----- 64 (213)
T ss_pred CcccceeEECCE---Ee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCccHH-----
Confidence 478999999752 45 666999999999999999999999999999999999 99999999997652
Q ss_pred EeeeecCCCcceeeeecCCCCcccccchHH---HHHHHHhccccceeEEec---CCChhhhhhhcccccccCCCcceeEE
Q 018083 167 QEYTIPRGSNSFSLYDTRSLSDDASDNINM---IKLWIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l---~~~ti~~ni~~~~~~~~~---~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
..+..++|++|++.+ +..++.+|+.++...... ......++++.++++.+++.+
T Consensus 65 ---------------~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 124 (213)
T cd03235 65 ---------------KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE----- 124 (213)
T ss_pred ---------------HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH-----
Confidence 123457788888754 234888998875432110 112334567788899999976
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++||
T Consensus 125 ------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~ 192 (213)
T cd03235 125 ------------LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL 192 (213)
T ss_pred ------------HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 45889999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhhhhhhcCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGI 315 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~ 315 (361)
+++..+||+++ +|++| +++.
T Consensus 193 ~~~~~~~d~i~-~l~~~-~~~~ 212 (213)
T cd03235 193 GLVLEYFDRVL-LLNRT-VVAS 212 (213)
T ss_pred HHHHHhcCEEE-EEcCc-Eeec
Confidence 46778999996 58875 5544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=275.43 Aligned_cols=182 Identities=18% Similarity=0.178 Sum_probs=146.7
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|++. ..++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~--------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~--- 64 (211)
T cd03298 1 VRLDKIRFSYGEQ--------PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET-----PQSGRVLINGVDVTA--- 64 (211)
T ss_pred CEEEeEEEEeCCE--------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCc---
Confidence 4689999999752 125999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.. ..+..+++++|++.+++. ++.+|+.++...... .....++++.++++.+++.+
T Consensus 65 ------------~~--~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~--------- 120 (211)
T cd03298 65 ------------AP--PADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK-LTAEDRQAIEVALARVGLAG--------- 120 (211)
T ss_pred ------------CC--HhHccEEEEecccccCCCCcHHHHHhcccccccC-ccHHHHHHHHHHHHHcCCHH---------
Confidence 11 113457889999888776 899999875431111 11234556788899999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 121 --------~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 192 (211)
T cd03298 121 --------LEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA 192 (211)
T ss_pred --------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 45889999999999999999999 999999653 789999999 567
Q ss_pred ccccchhhHhhhhhhhcCCC
Q 018083 297 LSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g 316 (361)
..+|||++ +|++|++++.|
T Consensus 193 ~~~~d~i~-~l~~G~i~~~~ 211 (211)
T cd03298 193 KRLAQRVV-FLDNGRIAAQG 211 (211)
T ss_pred HhhhCEEE-EEECCEEeecC
Confidence 78999996 59999987653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=282.65 Aligned_cols=196 Identities=15% Similarity=0.162 Sum_probs=156.8
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~~i~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~- 68 (242)
T TIGR03411 1 PILYLEGLSVSFDGF---KA---LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-----PDEGSVLFGGTDLTG- 68 (242)
T ss_pred CeEEEEeeEEEcCCe---EE---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCeecCC-
Confidence 368999999999752 45 666999999999999999999999999999999999 999999999977641
Q ss_pred eEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEe-------cCCChhhhhhhcccccccCCC
Q 018083 164 YFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIR-------RSDSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~-------~~~~~~~~~~v~~~l~~~gl~ 234 (361)
....+ .+..+++++|++.+++. ++.+|+.++..... .......++++.++++.+++.
T Consensus 69 --------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 134 (242)
T TIGR03411 69 --------------LPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA 134 (242)
T ss_pred --------------CCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc
Confidence 11111 12357888998888776 88899876532110 011123456778889999998
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVV 290 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIi 290 (361)
+ .+++++.+|||||+||++||||| ||||++||. ++|||+
T Consensus 135 ~-----------------~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 197 (242)
T TIGR03411 135 D-----------------EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVV 197 (242)
T ss_pred h-----------------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 7 35889999999999999999999 999999753 689999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+|| +++..+||+++ +|++|+++..|++++++.
T Consensus 198 ~sH~~~~~~~~~d~i~-~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 198 VEHDMEFVRSIADKVT-VLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred EECCHHHHHHhCCEEE-EEECCeEEeeCCHHHHhc
Confidence 999 56778999996 599999999998887754
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=289.41 Aligned_cols=203 Identities=16% Similarity=0.163 Sum_probs=157.6
Q ss_pred cccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 86 TDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 86 lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
|+++|+++.|++.. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~~ 74 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRA---LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-----PTQGSVRVDDTLITST 74 (280)
T ss_pred EEEEEEEEEcCCCCccccce---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccc
Confidence 78999999997421 0135 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccch--HHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
. ........+..++|++|++ .++..++.+|+.++.... ........+++.++++.+++.+.
T Consensus 75 ~-----------~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~----- 137 (280)
T PRK13649 75 S-----------KNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF-GVSQEEAEALAREKLALVGISES----- 137 (280)
T ss_pred c-----------cccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh-----
Confidence 0 0011122345688899986 355558899988654311 12233445567788889999742
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 138 -----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 206 (280)
T PRK13649 138 -----------LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD 206 (280)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 34888999999999999999999 999999753 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
++..+||+++ +|++|+++..|++++++..+
T Consensus 207 ~~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~ 236 (280)
T PRK13649 207 DVANYADFVY-VLEKGKLVLSGKPKDIFQDV 236 (280)
T ss_pred HHHHhCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 6778999996 59999999999988886643
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=344.82 Aligned_cols=225 Identities=12% Similarity=0.087 Sum_probs=181.0
Q ss_pred hhhHHHHHHHHhHHHHHh-----------hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcc
Q 018083 63 RRDAVFREVLQSYDQLRT-----------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 131 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~-----------~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKS 131 (361)
.+..|+.++++.+++... +..+.|+++||+++|+++.. ++ |+|+||+|++||.+|||||||||||
T Consensus 1201 ~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~-~v---L~~isl~I~~GekvaIVG~SGSGKS 1276 (1495)
T PLN03232 1201 NSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLP-PV---LHGLSFFVSPSEKVGVVGRTGAGKS 1276 (1495)
T ss_pred HHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCC-cc---cccceEEEcCCCEEEEECCCCCCHH
Confidence 344588888865444211 01235999999999965422 45 6669999999999999999999999
Q ss_pred hhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeE
Q 018083 132 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 211 (361)
Q Consensus 132 TLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~ 211 (361)
||+++|.|+++ |++|+|.+||.++. .+...+.|+.+++|+|++.+|..|+++|+..+.
T Consensus 1277 TL~~lL~rl~~-----p~~G~I~IdG~di~---------------~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-- 1334 (1495)
T PLN03232 1277 SMLNALFRIVE-----LEKGRIMIDDCDVA---------------KFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-- 1334 (1495)
T ss_pred HHHHHHhCCCc-----CCCceEEECCEEhh---------------hCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--
Confidence 99999999999 99999999999987 567778899999999999999999999998532
Q ss_pred EecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceee
Q 018083 212 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 282 (361)
Q Consensus 212 ~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L 282 (361)
+...+++.++++.+++.+.+...++.+.+.|++ ....||||||||++||||| ||||+++
T Consensus 1335 ------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e------~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaL 1402 (1495)
T PLN03232 1335 ------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSE------GGENFSVGQRQLLSLARALLRRSKILVLDEATASV 1402 (1495)
T ss_pred ------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecC------CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 233456778888888877554445555554444 3457999999999999998 9999997
Q ss_pred cC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 283 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 283 ~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|. ++|+|+|+| -.....||||+ ||++|++++.|+|++++..+.
T Consensus 1403 D~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIl-VL~~G~ivE~Gt~~eLl~~~~ 1461 (1495)
T PLN03232 1403 DVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKIL-VLSSGQVLEYDSPQELLSRDT 1461 (1495)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEE-EEECCEEEEECCHHHHHhCCC
Confidence 63 899999999 34445699995 699999999999999987654
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=287.48 Aligned_cols=197 Identities=13% Similarity=0.106 Sum_probs=157.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
..+|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 5 ~~~l~i~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~- 72 (265)
T PRK10253 5 VARLRGEQLTLGYGKY---TV---AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-----PAHGHVWLDGEHIQ- 72 (265)
T ss_pred ccEEEEEEEEEEECCE---EE---eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEEhh-
Confidence 3479999999999753 45 666999999999999999999999999999999999 99999999998764
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec---CCChhhhhhhcccccccCCCccee
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~---~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.......+..++|++|++.+++. ++.+|+.++...... ...+...+++.++++.+++.+
T Consensus 73 --------------~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--- 135 (265)
T PRK10253 73 --------------HYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH--- 135 (265)
T ss_pred --------------hCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH---
Confidence 11122233457888998876654 888888765321100 011233456778899999976
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++|
T Consensus 136 --------------~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~t 201 (265)
T PRK10253 136 --------------LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVL 201 (265)
T ss_pred --------------HhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45899999999999999999999 999999652 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
| +.+..+||+++ +|++|+++..|++++++.
T Consensus 202 H~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 202 HDLNQACRYASHLI-ALREGKIVAQGAPKEIVT 233 (265)
T ss_pred CCHHHHHHhCCEEE-EEECCEEEEeCCHHHHhh
Confidence 9 46789999996 599999999998877754
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=281.94 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=150.0
Q ss_pred cccccccceeeecCcce-eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~-~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++|+++|+++.|+.+.. .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~~ 75 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDV---LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-----PTSGDVIFNGQPMSK 75 (233)
T ss_pred ceEEEEeEEEEcCCCCcceee---EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc
Confidence 57999999999974321 245 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceee---eec-CCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 163 TYFLQEYTIPRGSNSFSL---YDT-RSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~---~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
... .+. +..++|++|++.+++. ++.+|+.++.... .......++++.++++.+++.+
T Consensus 76 ---------------~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~-- 137 (233)
T PRK11629 76 ---------------LSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG-KKKPAEINSRALEMLAAVGLEH-- 137 (233)
T ss_pred ---------------CCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch--
Confidence 111 111 2457888998877765 8889987653311 1223344567888999999987
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 291 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIii 291 (361)
.+++.+.+||||||||++||||| ||||++||. |+|||++
T Consensus 138 ---------------~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~ 202 (233)
T PRK11629 138 ---------------RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVV 202 (233)
T ss_pred ---------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45889999999999999999999 999999643 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCC
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~ 317 (361)
|| +.+.. +|+++ +|++|++++.++
T Consensus 203 sH~~~~~~~-~~~~~-~l~~G~i~~~~~ 228 (233)
T PRK11629 203 THDLQLAKR-MSRQL-EMRDGRLTAELS 228 (233)
T ss_pred eCCHHHHHh-hCEEE-EEECCEEEEEec
Confidence 99 44544 56885 599999987664
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=290.48 Aligned_cols=198 Identities=16% Similarity=0.199 Sum_probs=159.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccc---ceeeeccccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSVG 160 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~---G~I~i~G~~i 160 (361)
++|+++|+++.|++.. .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++ |+|.++|.++
T Consensus 4 ~~l~i~~l~~~~~~~~-~~~---l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-----p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 4 NIVEFKHVSFTYPDSK-KPA---LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-----PDDNPNSKITVDGITL 74 (282)
T ss_pred ceEEEEEEEEEcCCCC-ccc---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCCCCCcEEEECCEEC
Confidence 4799999999996432 245 666999999999999999999999999999999999 887 8999999876
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchH-HH-HHHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MI-KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~-~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
. .......+..++|++|++. .+ ..++.+|+.++.... .....+..+++.++++.++|.+
T Consensus 75 ~---------------~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~--- 135 (282)
T PRK13640 75 T---------------AKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR-AVPRPEMIKIVRDVLADVGMLD--- 135 (282)
T ss_pred C---------------cCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCChh---
Confidence 4 1122234556889999974 34 348999998754321 2233445567888999999987
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
++++++.+|||||+||++||||| |||+++||. |+|||++|
T Consensus 136 --------------~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~t 201 (282)
T PRK13640 136 --------------YIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISIT 201 (282)
T ss_pred --------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45899999999999999999999 999999642 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
| +.+ ..|||++ +|++|++++.|++++++..+
T Consensus 202 H~~~~~-~~~d~i~-~l~~G~i~~~g~~~~~~~~~ 234 (282)
T PRK13640 202 HDIDEA-NMADQVL-VLDDGKLLAQGSPVEIFSKV 234 (282)
T ss_pred cCHHHH-HhCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 9 454 5799996 59999999999998887654
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=280.98 Aligned_cols=195 Identities=16% Similarity=0.083 Sum_probs=148.3
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh--cccccccccceeeecccccCcc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~--~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~~~~- 68 (243)
T TIGR01978 1 LKIKDLHVSVEDK---EI---LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE-----VTSGTILFKGQDLLE- 68 (243)
T ss_pred CeEeeEEEEECCE---EE---EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCcceEEECCEecCC-
Confidence 5789999999753 45 66699999999999999999999999999999994 6 899999999987641
Q ss_pred eEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEec------CCChhhhhhhcccccccCCCc
Q 018083 164 YFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRR------SDSSSLRNRMRCKAHKIGCEP 235 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~------~~~~~~~~~v~~~l~~~gl~~ 235 (361)
..... .+..+++++|++.+++. ++.+++.+....... .+..+..+++.++++.+++.+
T Consensus 69 --------------~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 134 (243)
T TIGR01978 69 --------------LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE 134 (243)
T ss_pred --------------CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch
Confidence 11111 12236778888877665 677777654321110 111233456788899999974
Q ss_pred ceeEEEEEEEEEEechhhhhhccC-Cchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 236 SVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 236 ~~~~~~~~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
. ..++.+. +||||||||++||||| ||||++||. +.|||
T Consensus 135 ~----------------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi 198 (243)
T TIGR01978 135 E----------------FLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFL 198 (243)
T ss_pred h----------------hcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEE
Confidence 2 2367776 5999999999999999 999999753 78999
Q ss_pred EEEc--Cccccc-cchhhHhhhhhhhcCCCCcccccc
Q 018083 290 VVTH--GDLLSL-TDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 290 iiTH--~~~~~~-aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
++|| +.+..+ ||+++ +|++|+++..|+++++..
T Consensus 199 ~vsH~~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 234 (243)
T TIGR01978 199 IITHYQRLLNYIKPDYVH-VLLDGRIVKSGDVELAKE 234 (243)
T ss_pred EEEecHHHHHhhcCCeEE-EEeCCEEEEecCHHHhcc
Confidence 9999 466677 89996 599999999998875543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=304.19 Aligned_cols=193 Identities=17% Similarity=0.278 Sum_probs=165.5
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++++++|++|+|++ ++||++ |||+|.+||++||+|.||||||||+|+|+|.++ |++|+|+++|+...
T Consensus 5 ~~~ll~~~~i~K~Fgg---V~AL~~---v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-----p~~G~I~~~G~~~~ 73 (500)
T COG1129 5 TPPLLELRGISKSFGG---VKALDG---VSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-----PDSGEILIDGKPVA 73 (500)
T ss_pred ccceeeeecceEEcCC---ceeecc---ceeEEeCceEEEEecCCCCCHHHHHHHHhCccc-----CCCceEEECCEEcc
Confidence 3458999999999987 578555 999999999999999999999999999999999 99999999998875
Q ss_pred cceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEE---ecCCChhhhhhhcccccccCCCcc
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~---~~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
. ..+.+. ..-+..|+|++.+++. +|.+||.++.... +..+.+..++++.++|+.+++...
T Consensus 74 ~---------------~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~ 138 (500)
T COG1129 74 F---------------SSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID 138 (500)
T ss_pred C---------------CCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC
Confidence 1 122222 2347789999999999 9999999887643 346678888999999999998632
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec----------------CCccEEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVV 291 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~----------------~g~tvIii 291 (361)
.+.+..+||.||||.|+||||| ||||++|. .|.+||+|
T Consensus 139 -----------------~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~I 201 (500)
T COG1129 139 -----------------PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYI 201 (500)
T ss_pred -----------------hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2788999999999999999999 99999963 39999999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCc
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
|| +++.++||||. ||.+|+.+...+.
T Consensus 202 SHrl~Ei~~i~Drit-VlRDG~~v~~~~~ 229 (500)
T COG1129 202 SHRLDEVFEIADRIT-VLRDGRVVGTRPT 229 (500)
T ss_pred cCcHHHHHHhcCEEE-EEeCCEEeeeccc
Confidence 99 89999999996 5999999998873
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=270.44 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=168.2
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
|++++|++++|+.. .+ |+++|++|++|.+++||||||||||||+.++++|++ +++|+|+++|.++.
T Consensus 1 MI~i~nv~K~y~~~---~v---l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-----~d~G~i~i~g~~~~--- 66 (252)
T COG4604 1 MITIENVSKSYGTK---VV---LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK-----KDSGEITIDGLELT--- 66 (252)
T ss_pred CeeehhhhHhhCCE---Ee---eccceeeecCCceeEEECCCCccHHHHHHHHHHhcc-----ccCceEEEeeeecc---
Confidence 58899999999874 55 555999999999999999999999999999999999 99999999999986
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccce-eEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~-~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
++.-.++........|...+... +|.+-+.||. +..++...++.+..+.++++.+.|.+
T Consensus 67 ------------~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~------- 127 (252)
T COG4604 67 ------------STPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED------- 127 (252)
T ss_pred ------------cCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc-------
Confidence 23334445555666676655544 8999999985 34445556788889999999999998
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+.+++..+||||||||+.||..| |||..+||- |+||++|-| +
T Consensus 128 ----------l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN 197 (252)
T COG4604 128 ----------LSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197 (252)
T ss_pred ----------hHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc
Confidence 66999999999999999999999 999999752 999999999 7
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
.|.+++|.|+ -|++|+++..|++++++...
T Consensus 198 fAS~YsD~IV-AlK~G~vv~~G~~~eii~~~ 227 (252)
T COG4604 198 FASCYSDHIV-ALKNGKVVKQGSPDEIIQPE 227 (252)
T ss_pred HHHhhhhhee-eecCCEEEecCCHHHhcCHH
Confidence 9999999995 59999999999999998753
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=289.77 Aligned_cols=206 Identities=14% Similarity=0.133 Sum_probs=158.0
Q ss_pred cccccccceeeecCcce--eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 84 SLTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~--~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+.|+++|++++|++... ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~ 76 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKA---LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-----SETGQTIVGDYAIP 76 (289)
T ss_pred ceEEEEEEEEEeCCCCccccce---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcc
Confidence 45899999999975320 135 666999999999999999999999999999999999 99999999998763
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccch--HHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
... . . .......+..++|++|++ .++..++.+|+.++.... ........+++.++++.+++...
T Consensus 77 ~~~--~--~------~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~--- 142 (289)
T PRK13645 77 ANL--K--K------IKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL-GENKQEAYKKVPELLKLVQLPED--- 142 (289)
T ss_pred ccc--c--c------cccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh---
Confidence 100 0 0 001123345678899986 345558999998754311 11223334567778888998521
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH 293 (361)
++++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 143 -------------~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH 209 (289)
T PRK13645 143 -------------YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTH 209 (289)
T ss_pred -------------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 35889999999999999999999 999999653 789999999
Q ss_pred --CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+++.++||+++ +|++|+++..|++++++..+
T Consensus 210 ~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~ 242 (289)
T PRK13645 210 NMDQVLRIADEVI-VMHEGKVISIGSPFEIFSNQ 242 (289)
T ss_pred CHHHHHHhCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 56778999996 59999999999988877654
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=285.17 Aligned_cols=185 Identities=15% Similarity=0.193 Sum_probs=149.6
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ml~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 67 (255)
T PRK11248 1 MLQISHLYADYGGK---PA---LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-----YQHGSITLDGKPVEG-- 67 (255)
T ss_pred CEEEEEEEEEeCCe---ee---EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC--
Confidence 47899999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
....++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 68 ------------------~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~-------- 120 (255)
T PRK11248 68 ------------------PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEG-------- 120 (255)
T ss_pred ------------------CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 01135778888777664 8888887653211 1222344567888999999986
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 121 ---------~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~ 191 (255)
T PRK11248 121 ---------AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEE 191 (255)
T ss_pred ---------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999642 789999999 56
Q ss_pred cccccchhhHhhh--hhhhcCCCCcc
Q 018083 296 LLSLTDRARIRTY--LGELLGIPPAK 319 (361)
Q Consensus 296 ~~~~aDri~vvl~--~G~iv~~g~~~ 319 (361)
+..+||+++ +|+ +|++++.++.+
T Consensus 192 ~~~~~d~i~-~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 192 AVFMATELV-LLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHhCCEEE-EEeCCCcEEEEEecCC
Confidence 778999996 588 59998877653
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=285.00 Aligned_cols=204 Identities=17% Similarity=0.148 Sum_probs=152.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc----
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 159 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~---- 159 (361)
++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 70 (253)
T TIGR02323 2 PLLQVSGLSKSYGGG---KG---CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-----PDHGTATYIMRSGAEL 70 (253)
T ss_pred ceEEEeeeEEEeCCc---eE---eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEeccccccc
Confidence 579999999999753 35 666999999999999999999999999999999999 999999999876
Q ss_pred -cCcceEeEeeeecCCCcceeee----ecCCCCcccccchHH--HHH-HHHhccccceeEEecCCChhhhhhhccccccc
Q 018083 160 -GDGTYFLQEYTIPRGSNSFSLY----DTRSLSDDASDNINM--IKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 160 -i~~~~~~~~~~i~~~~~~~~~~----d~r~~i~~v~q~~~l--~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~ 231 (361)
+.. .... ..+..+++++|++.. ... ++.+|+.+..............+++.++++.+
T Consensus 71 ~~~~---------------~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l 135 (253)
T TIGR02323 71 ELYQ---------------LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEV 135 (253)
T ss_pred cccc---------------CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHc
Confidence 320 0000 112346777777531 121 44555543211000011123346777889999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------C
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------D 285 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g 285 (361)
++.+. .+++.+.+||||||||++||||| |||+++||. +
T Consensus 136 ~l~~~----------------~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 199 (253)
T TIGR02323 136 EIDPT----------------RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLG 199 (253)
T ss_pred CCChh----------------hhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 99631 35889999999999999999999 999999752 7
Q ss_pred ccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 286 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 286 ~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
.|||++|| +.+..+||+++ +|++|++++.|++++++..+.+.++
T Consensus 200 ~tii~vsH~~~~~~~~~d~~~-~l~~G~i~~~~~~~~~~~~~~~~~~ 245 (253)
T TIGR02323 200 LAVIIVTHDLGVARLLAQRLL-VMQQGRVVESGLTDQVLDDPQHPYT 245 (253)
T ss_pred CEEEEEeCCHHHHHHhcCEEE-EEECCEEEEECCHHHHhcCCCCHHH
Confidence 89999999 56667899996 5999999999999888876654443
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=275.48 Aligned_cols=184 Identities=15% Similarity=0.219 Sum_probs=149.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|+++.|+. . ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~~~~~l~~~~~~---~-----~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 64 (213)
T TIGR01277 1 LALDKVRYEYEH---L-----PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-----PASGSIKVNDQSHTG--- 64 (213)
T ss_pred CeEEeeeEEeCC---c-----ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEccc---
Confidence 478999999963 2 566999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. ...+..+++++|++.+++. ++.+|+.++...... .....++++.++++.+++.+
T Consensus 65 ------------~--~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~--------- 120 (213)
T TIGR01277 65 ------------L--APYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLK-LNAEQQEKVVDAAQQVGIAD--------- 120 (213)
T ss_pred ------------C--ChhccceEEEeccCccCCCCcHHHHHHhHhhccCC-ccHHHHHHHHHHHHHcCcHH---------
Confidence 1 1234568889999888775 999999865321111 12233556778899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++.+.+||||||||++||||| ||||++||. +.|||++|| .++
T Consensus 121 --------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~ 192 (213)
T TIGR01277 121 --------YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDA 192 (213)
T ss_pred --------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999642 789999999 566
Q ss_pred ccccchhhHhhhhhhhcCCCCc
Q 018083 297 LSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~ 318 (361)
..+||+++ +|++|++++.|++
T Consensus 193 ~~~~d~v~-~l~~g~i~~~~~~ 213 (213)
T TIGR01277 193 RAIASQIA-VVSQGKIKVVSDC 213 (213)
T ss_pred HhhcCeEE-EEECCeEEEecCC
Confidence 78999996 5999999887753
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=287.77 Aligned_cols=216 Identities=16% Similarity=0.173 Sum_probs=162.8
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++...-.|++|+|.++|.++.
T Consensus 22 ~~~~l~~~nl~~~~~~~---~i---l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 22 EQTALEVRNLNLFYGDK---QA---LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred CCcEEEEEEEEEEECCe---eE---eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 34579999999999753 45 6669999999999999999999999999999999871000037999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++........+...++++.++++.+++.+.+.
T Consensus 96 ~~-------------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--- 159 (272)
T PRK14236 96 DK-------------KVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK--- 159 (272)
T ss_pred cc-------------ccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH---
Confidence 10 01112334567889998877767889999765421111112233456777888888864210
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
..+++.+.+||||||||++||||| ||||++||. +.|||++|| ++
T Consensus 160 ----------~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~ 229 (272)
T PRK14236 160 ----------DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQ 229 (272)
T ss_pred ----------HHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHH
Confidence 135788999999999999999999 999999753 689999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
+..+|||++ +|++|+++..|++++++..+.+..+
T Consensus 230 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~ 263 (272)
T PRK14236 230 AARVSDYTA-FMYMGKLVEYGDTDTLFTSPAKKQT 263 (272)
T ss_pred HHhhCCEEE-EEECCEEEecCCHHHHhcCCCcHHH
Confidence 778999996 5999999999999988876655443
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=344.50 Aligned_cols=225 Identities=11% Similarity=0.095 Sum_probs=181.3
Q ss_pred hhhHHHHHHHHhHHHHHh-----------hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcc
Q 018083 63 RRDAVFREVLQSYDQLRT-----------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 131 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~-----------~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKS 131 (361)
.+..|+.++++.+++.+. +..+.|+++||+++|+++.. ++ |+|+||+|++||.+||||+||||||
T Consensus 1204 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~-~V---L~~is~~I~~GekVaIVGrSGSGKS 1279 (1622)
T PLN03130 1204 NAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELP-PV---LHGLSFEISPSEKVGIVGRTGAGKS 1279 (1622)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCC-ce---ecceeEEEcCCCEEEEECCCCCCHH
Confidence 344588888765443211 11246999999999975432 45 6669999999999999999999999
Q ss_pred hhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeE
Q 018083 132 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 211 (361)
Q Consensus 132 TLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~ 211 (361)
||+++|.|+++ |++|+|.+||.++. .+.+.++|+.+++|+|++.+|..||++|+..+.
T Consensus 1280 TLl~lL~rl~~-----p~~G~I~IDG~dI~---------------~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-- 1337 (1622)
T PLN03130 1280 SMLNALFRIVE-----LERGRILIDGCDIS---------------KFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-- 1337 (1622)
T ss_pred HHHHHHhCcCC-----CCCceEEECCEecc---------------cCCHHHHHhccEEECCCCccccccHHHHhCcCC--
Confidence 99999999999 99999999999987 567788899999999999999999999998532
Q ss_pred EecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceee
Q 018083 212 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 282 (361)
Q Consensus 212 ~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L 282 (361)
+...+++.++++.+++.+.+...++.+.+.|.+ ....||||||||++||||| ||||+++
T Consensus 1338 ------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge------~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaL 1405 (1622)
T PLN03130 1338 ------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSE------AGENFSVGQRQLLSLARALLRRSKILVLDEATAAV 1405 (1622)
T ss_pred ------CCCHHHHHHHHHHcCcHHHHHhCccccCccccC------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 224566788888888877554444555554433 4568999999999999999 9999997
Q ss_pred cC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 283 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 283 ~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|. ++|+|+|+| -.....||||+ ||++|+|++.|+|++++..+.
T Consensus 1406 D~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIl-VLd~G~IvE~Gt~~eLl~~~~ 1464 (1622)
T PLN03130 1406 DVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL-VLDAGRVVEFDTPENLLSNEG 1464 (1622)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEE-EEECCEEEEeCCHHHHHhCCC
Confidence 63 899999999 34445699995 699999999999999987643
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=291.75 Aligned_cols=217 Identities=19% Similarity=0.228 Sum_probs=163.3
Q ss_pred HhhhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc
Q 018083 79 RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 158 (361)
Q Consensus 79 ~~~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 158 (361)
++...++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++.....|++|+|.++|.
T Consensus 33 ~~~~~~~l~i~~l~~~~~~~---~i---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~ 106 (285)
T PRK14254 33 ASSGETVIEARDLNVFYGDE---QA---LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGK 106 (285)
T ss_pred ccCCCceEEEEEEEEEECCE---ee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 33456789999999999753 45 6669999999999999999999999999999999861000147999999998
Q ss_pred ccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 159 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 159 ~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
++... .......+..++|++|++.+++.++.+|+.++.... ... ....+++.++++.+++...+
T Consensus 107 ~i~~~-------------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~i- 170 (285)
T PRK14254 107 NVYDA-------------DVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQ-GYD-GDIDERVEESLRRAALWDEV- 170 (285)
T ss_pred Ecccc-------------ccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHc-CCc-HHHHHHHHHHHHHcCCCchh-
Confidence 76310 011123345678899988777668888887654311 111 23456678888898885311
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH- 293 (361)
...+++++.+||||||||++||||| |||+++||. +.|||++||
T Consensus 171 ------------~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~ 238 (285)
T PRK14254 171 ------------KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHN 238 (285)
T ss_pred ------------HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 0035788999999999999999999 999999753 579999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
+.+..+|||++++|++|++++.|++++++..+.+..
T Consensus 239 ~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~~~~~~ 275 (285)
T PRK14254 239 MQQAARISDKTAVFLTGGELVEFDDTDKIFENPESQR 275 (285)
T ss_pred HHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhCcCCHH
Confidence 567789999744479999999999988877655544
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=287.97 Aligned_cols=199 Identities=15% Similarity=0.175 Sum_probs=159.1
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|+......+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~---l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~-- 72 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQ---LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-----EFEGKVKIDGELLT-- 72 (277)
T ss_pred ceEEEEEEEEEcCCCCcCee---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEECC--
Confidence 37899999999974321235 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH-HH-HHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MI-KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~-~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......+..++|++|++. .+ ..++.+|+.++.... ........+++.++++.+++.+
T Consensus 73 -------------~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------ 132 (277)
T PRK13642 73 -------------AENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ-GIPREEMIKRVDEALLAVNMLD------ 132 (277)
T ss_pred -------------cCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHh------
Confidence 1112234567889999974 34 348999998754311 1223344567788899999976
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
++++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 133 -----------~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~ 201 (277)
T PRK13642 133 -----------FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL 201 (277)
T ss_pred -----------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 45889999999999999999999 999999642 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+. .||+++ +|++|++++.|++++++..+
T Consensus 202 ~~~~-~~d~i~-~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 202 DEAA-SSDRIL-VMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHH-hCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 4554 699996 59999999999998887654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=284.25 Aligned_cols=194 Identities=15% Similarity=0.091 Sum_probs=153.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~---- 66 (256)
T TIGR03873 2 LRLSRVSWSAGGR---LI---VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-----PDAGTVDLAGVDLH---- 66 (256)
T ss_pred ceEEeEEEEECCE---EE---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEEcc----
Confidence 6789999999753 45 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHH-HHHHhccccceeEE---ecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~-~ti~~ni~~~~~~~---~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......+..++|++|++.++. .++.+|+.++.... .........+++.++++.+++.+
T Consensus 67 -----------~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 129 (256)
T TIGR03873 67 -----------GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH------ 129 (256)
T ss_pred -----------cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHh------
Confidence 1111122345778888875443 38888887653211 01112233456788899999976
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
++++++.+||||||||++||||| ||||++||. +.|||++|| +
T Consensus 130 -----------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (256)
T TIGR03873 130 -----------LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN 198 (256)
T ss_pred -----------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45889999999999999999999 999999753 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
.+..+||+++ +|++|++++.|++++++.
T Consensus 199 ~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 199 LAASYCDHVV-VLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhCCEEE-EEeCCCEEEecCHHHhhC
Confidence 6678999996 599999999998877654
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=284.49 Aligned_cols=194 Identities=14% Similarity=0.111 Sum_probs=154.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~---~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~G~i~~~g~~~~--- 67 (258)
T PRK13548 2 MLEARNLSVRLGGR---TL---LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-----PDSGEVRLNGRPLA--- 67 (258)
T ss_pred eEEEEeEEEEeCCe---ee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEcc---
Confidence 58899999999753 45 666999999999999999999999999999999999 99999999997654
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 68 ------------~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 126 (258)
T PRK13548 68 ------------DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH-GLSRAEDDALVAAALAQVDLAH-------- 126 (258)
T ss_pred ------------cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc-CCCcHHHHHHHHHHHHHcCCHh--------
Confidence 11112223457888888766443 8889987754321 1122333456778899999976
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------------CCCceeecC-----------------CccEEEE
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD-----------------DKPVVVV 291 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------------DEPt~~L~~-----------------g~tvIii 291 (361)
..++.+.+||||||||++||||| ||||++||. +.|||++
T Consensus 127 ---------~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~ 197 (258)
T PRK13548 127 ---------LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVV 197 (258)
T ss_pred ---------HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45889999999999999999975 999999642 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
|| ..+..+||+++ +|++|+++..|++++++.
T Consensus 198 sH~~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 198 LHDLNLAARYADRIV-LLHQGRLVADGTPAEVLT 230 (258)
T ss_pred ECCHHHHHHhcCEEE-EEECCEEEeeCCHHHHhC
Confidence 99 46678999996 599999999988877654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=293.18 Aligned_cols=186 Identities=10% Similarity=0.065 Sum_probs=151.4
Q ss_pred eeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeec
Q 018083 93 LSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIP 172 (361)
Q Consensus 93 ~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~ 172 (361)
++|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 k~y~~~---~~---l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~---------- 59 (302)
T TIGR01188 1 KVYGDF---KA---VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-----PTSGTARVAGYDVVR---------- 59 (302)
T ss_pred CeeCCe---eE---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc----------
Confidence 357542 46 666999999999999999999999999999999999 999999999987641
Q ss_pred CCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEech
Q 018083 173 RGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGL 251 (361)
Q Consensus 173 ~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~ 251 (361)
.....+..+++++|++.+++. ++.+|+.+..... ........+++.++++.+++.+
T Consensus 60 ------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------------- 116 (302)
T TIGR01188 60 ------EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY-GLPKDEAEERAEELLELFELGE---------------- 116 (302)
T ss_pred ------CHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh----------------
Confidence 011234568889999887776 8899987643211 2223445567888999999987
Q ss_pred hhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccccccchhh
Q 018083 252 AVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRAR 304 (361)
Q Consensus 252 ~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~~~aDri~ 304 (361)
.+++++.+||||||||++||||| ||||++||+ |+|||++|| +++..+||+++
T Consensus 117 -~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~ 195 (302)
T TIGR01188 117 -AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIA 195 (302)
T ss_pred -HhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 45889999999999999999999 999999753 799999999 57788999996
Q ss_pred HhhhhhhhcCCCCccccccC
Q 018083 305 IRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 305 vvl~~G~iv~~g~~~~i~~~ 324 (361)
+|++|+++..|+++++...
T Consensus 196 -~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 196 -IIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred -EEECCEEEEECCHHHHHHh
Confidence 5999999999999887553
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=284.84 Aligned_cols=217 Identities=16% Similarity=0.179 Sum_probs=162.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++|++++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++......++|+|.++|+++..
T Consensus 5 ~~~l~~~~l~~~~~~~---~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 5 IPAIKVKDLSFYYNTS---KA---IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred cceEEEEEEEEEECCe---Ee---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 3579999999999753 45 66699999999999999999999999999999998721000058999999987631
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. .......+..+++++|++.+++.++.+|+.++.......+.....+++.++++.+++...+
T Consensus 79 ~-------------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l----- 140 (259)
T PRK14260 79 P-------------RININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV----- 140 (259)
T ss_pred c-------------ccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----
Confidence 0 0111223456788999987777789999876543211112233345667778888875311
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 296 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~ 296 (361)
...+++++.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 141 --------~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i 212 (259)
T PRK14260 141 --------KDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQA 212 (259)
T ss_pred --------hhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 0135788999999999999999999 999999753 689999999 677
Q ss_pred ccccchhhHhhh-----hhhhcCCCCccccccCCCCCCCCc
Q 018083 297 LSLTDRARIRTY-----LGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 297 ~~~aDri~vvl~-----~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
..+||+++ +|+ +|++++.|++++++..+.++.+..
T Consensus 213 ~~~~d~i~-~l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~ 252 (259)
T PRK14260 213 TRVSDFTA-FFSTDESRIGQMVEFGVTTQIFSNPLDSRTRD 252 (259)
T ss_pred HHhcCeEE-EEeccCCCCceEEEeCCHHHHhcCCCChHHHH
Confidence 89999996 487 599999999999987766555433
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=276.62 Aligned_cols=186 Identities=18% Similarity=0.179 Sum_probs=145.2
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+|+++|+++.|+++. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~- 71 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRV---LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-----PTSGEVLFNGQSLSK- 71 (221)
T ss_pred CEEEEeeeEEccCCCcceEe---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhh-
Confidence 478999999996421 1245 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeee---ecC-CCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 164 YFLQEYTIPRGSNSFSLY---DTR-SLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~---d~r-~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.... ..+ ..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 72 --------------~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--- 133 (221)
T TIGR02211 72 --------------LSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG-KKSVKEAKERAYEMLEKVGLEH--- 133 (221)
T ss_pred --------------cCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh---
Confidence 1111 112 457888998877755 8889987643211 1122334556778899999987
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|
T Consensus 134 --------------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~t 199 (221)
T TIGR02211 134 --------------RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVT 199 (221)
T ss_pred --------------hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45889999999999999999999 999999652 78999999
Q ss_pred c--CccccccchhhHhhhhhhhc
Q 018083 293 H--GDLLSLTDRARIRTYLGELL 313 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv 313 (361)
| +.+ ..||+++ +|++|+++
T Consensus 200 H~~~~~-~~~d~v~-~l~~G~i~ 220 (221)
T TIGR02211 200 HDLELA-KKLDRVL-EMKDGQLF 220 (221)
T ss_pred CCHHHH-hhcCEEE-EEeCCEec
Confidence 9 444 4589996 59999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=274.80 Aligned_cols=182 Identities=21% Similarity=0.252 Sum_probs=142.2
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
+++|+++.|++.. .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 ~~~~l~~~~~~~~-~~i---l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~----- 66 (211)
T cd03225 1 ELKNLSFSYPDGA-RPA---LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-----PTSGEVLVDGKDLT----- 66 (211)
T ss_pred CceeEEEecCCCC-eee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcc-----
Confidence 4789999997521 145 666999999999999999999999999999999999 99999999997764
Q ss_pred EeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 167 QEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.......+..++|++|++. ++..++.+|+.++.... ........+++.++++.+++.+
T Consensus 67 ----------~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 126 (211)
T cd03225 67 ----------KLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL-GLPEEEIEERVEEALELVGLEG--------- 126 (211)
T ss_pred ----------cCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCcHh---------
Confidence 1111223456788999874 23348889987653211 1122334556778899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| .++.
T Consensus 127 --------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~ 198 (211)
T cd03225 127 --------LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLL 198 (211)
T ss_pred --------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999753 789999999 5677
Q ss_pred cccchhhHhhhhhh
Q 018083 298 SLTDRARIRTYLGE 311 (361)
Q Consensus 298 ~~aDri~vvl~~G~ 311 (361)
.+||+++ +|++|+
T Consensus 199 ~~~d~i~-~l~~G~ 211 (211)
T cd03225 199 ELADRVI-VLEDGK 211 (211)
T ss_pred HhCCEEE-EEeCCC
Confidence 8899995 588874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=270.46 Aligned_cols=197 Identities=16% Similarity=0.156 Sum_probs=164.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
||+++|++++..++ ++ |+++||++++||+++|+||||||||||+|.|+|-+. |++|++.++|.++.
T Consensus 1 mi~a~nls~~~~Gr---~l---l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~-----p~~G~v~~~g~~l~--- 66 (259)
T COG4559 1 MIRAENLSYSLAGR---RL---LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-----PDSGEVTLNGVPLN--- 66 (259)
T ss_pred CeeeeeeEEEeecc---ee---ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC-----CCCCeEeeCCcChh---
Confidence 58899999998664 45 555999999999999999999999999999999999 99999999999886
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHH-HHHHHHhccccceeEEecCC-ChhhhhhhcccccccCCCcceeEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINM-IKLWIMEGVRHGELVIRRSD-SSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l-~~~ti~~ni~~~~~~~~~~~-~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
++...+....-+..+|+..+ |+.++.+-|.+|...++... ..+..+.+.++|...++..
T Consensus 67 ------------~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~------- 127 (259)
T COG4559 67 ------------SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG------- 127 (259)
T ss_pred ------------hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhh-------
Confidence 34555555556677888765 67789999998877553322 2244445677888888887
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------------CCCceeec----------------CCccEEEE
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFR----------------DDKPVVVV 291 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------------DEPt~~L~----------------~g~tvIii 291 (361)
++.+...+|||||||||.+||.| ||||++|| +|..|+.|
T Consensus 128 ----------la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~V 197 (259)
T COG4559 128 ----------LAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAV 197 (259)
T ss_pred ----------hhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEE
Confidence 56888899999999999999998 99999975 28899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
-| +.++.|||||+ +|++|+++..|++++++..+
T Consensus 198 LHDLNLAA~YaDriv-ll~~Grv~a~g~p~~vlt~E 232 (259)
T COG4559 198 LHDLNLAAQYADRIV-LLHQGRVIASGSPQDVLTDE 232 (259)
T ss_pred EccchHHHHhhheee-eeeCCeEeecCCHHHhcCHH
Confidence 99 78899999995 59999999999999988754
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=287.86 Aligned_cols=213 Identities=18% Similarity=0.225 Sum_probs=161.7
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|+.. .+ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|.++.
T Consensus 18 ~~~~l~i~nl~~~~~~~---~i---l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 18 AAPAMAAVNLTLGFAGK---TV---LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred cCcEEEEeeEEEEECCE---EE---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence 35689999999999753 45 6669999999999999999999999999999999981100026999999997764
Q ss_pred cceEeEeeeecCCCcce-eeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSF-SLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~-~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. . .....+..++|++|++.+++.++.+|+.++..........+.++.+.++++.+++....
T Consensus 92 ~---------------~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 153 (276)
T PRK14271 92 N---------------YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV--- 153 (276)
T ss_pred c---------------cchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh---
Confidence 0 1 11123456788999887776788899886542111112233344556677888886411
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--C
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 294 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~ 294 (361)
...+++.+.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 154 ----------~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~ 223 (276)
T PRK14271 154 ----------KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLA 223 (276)
T ss_pred ----------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 0034778999999999999999999 999999753 689999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
.+..+|||++ +|++|++++.|++++++..+.++.
T Consensus 224 ~~~~~~dri~-~l~~G~i~~~g~~~~~~~~~~~~~ 257 (276)
T PRK14271 224 QAARISDRAA-LFFDGRLVEEGPTEQLFSSPKHAE 257 (276)
T ss_pred HHHHhCCEEE-EEECCEEEEeCCHHHHHhCcCcHH
Confidence 6778999996 599999999999999987765543
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=282.89 Aligned_cols=214 Identities=17% Similarity=0.174 Sum_probs=158.3
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|++++|+.. .+ |+++||+|.+||+++|+||||||||||+++|+|+.+.....+++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 3 KKIITSSDVHLFYGKF---EA---LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred cceEEEEeEEEEECCe---eE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 4579999999999752 45 66699999999999999999999999999999986411000258999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. .......+..++|++|++.+++.++.+|+.++............++++.++++.+++...+
T Consensus 77 ~-------------~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i----- 138 (252)
T PRK14255 77 P-------------NEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV----- 138 (252)
T ss_pred c-------------cccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-----
Confidence 0 0011123456788898887766688888876532111111122334555667777664211
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 296 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~ 296 (361)
...+++.+.+||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 139 --------~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~ 210 (252)
T PRK14255 139 --------KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQA 210 (252)
T ss_pred --------hhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHH
Confidence 0135788999999999999999999 999999753 689999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
..+||+++ +|++|++++.|++.+++..+.+..
T Consensus 211 ~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~ 242 (252)
T PRK14255 211 SRISDKTA-FFLTGNLIEFADTKQMFLNPKEKE 242 (252)
T ss_pred HHhCCEEE-EEECCEEEEeCCHHHHhcCCCChH
Confidence 78999996 599999999999999988776543
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=314.64 Aligned_cols=222 Identities=11% Similarity=0.159 Sum_probs=167.9
Q ss_pred hhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhh
Q 018083 64 RDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 135 (361)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~ 135 (361)
+..|+.++++.+++.... ..+.++++|++++|++.. ++ |+++||+|++|++++|+||||||||||++
T Consensus 305 ~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~--~~---l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ 379 (585)
T TIGR01192 305 KLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSS--QG---VFDVSFEAKAGQTVAIVGPTGAGKTTLIN 379 (585)
T ss_pred HHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCCC--cc---ccceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 344778877654322111 123589999999997543 35 66699999999999999999999999999
Q ss_pred hhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecC
Q 018083 136 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 215 (361)
Q Consensus 136 ~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~ 215 (361)
+|+|+++ |++|+|.++|.++. .+...+.+..+++++|++.+|..++.+|+.++..
T Consensus 380 ll~g~~~-----~~~G~i~~~g~~~~---------------~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~----- 434 (585)
T TIGR01192 380 LLQRVYD-----PTVGQILIDGIDIN---------------TVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE----- 434 (585)
T ss_pred HHccCCC-----CCCCEEEECCEEhh---------------hCCHHHHHhheEEEccCCccCcccHHHHHhcCCC-----
Confidence 9999999 99999999998875 2344456778999999999998999999987533
Q ss_pred CChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--
Q 018083 216 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 284 (361)
Q Consensus 216 ~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-- 284 (361)
....+++.++++.+++.+.+.+.++.+.. ...+....||||||||++||||| ||||++||.
T Consensus 435 --~~~~~~~~~a~~~~~~~~~i~~l~~g~~t------~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~ 506 (585)
T TIGR01192 435 --GATDEEVYEAAKAAAAHDFILKRSNGYDT------LVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506 (585)
T ss_pred --CCCHHHHHHHHHHhCcHHHHHhccccccc------hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 11233444555555554432222222222 23556778999999999999998 999999763
Q ss_pred -------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 -------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| .+....||+|+ +|++|++++.|+++++...
T Consensus 507 ~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 507 EARVKNAIDALRKNRTTFIIAHRLSTVRNADLVL-FLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEE-EEECCEEEEECCHHHHHHC
Confidence 799999999 44446799995 6999999999999888764
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=287.50 Aligned_cols=216 Identities=17% Similarity=0.188 Sum_probs=160.7
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|+++.|++. .+ |+++||+|++|++++|+|+||||||||+++|+|+++.....|++|+|.++|.++.
T Consensus 21 ~~~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 21 KKVVFDTQNLNLWYGED---HA---LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred CceEEEEeeeEEEECCc---ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence 34589999999999753 45 6669999999999999999999999999999999851111148999999998763
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++.......+....++.+.++++.+++...+
T Consensus 95 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l---- 157 (271)
T PRK14238 95 DK-------------SYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL---- 157 (271)
T ss_pred cc-------------cccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH----
Confidence 10 0112233556888999988776788999987543111111122234455666666542211
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++++.+||||||||++||||| ||||++||. ++|||++|| +.
T Consensus 158 ---------~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~ 228 (271)
T PRK14238 158 ---------KDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQ 228 (271)
T ss_pred ---------HHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHH
Confidence 0135788999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
+..+||+++ +|++|+++..|++++++..|.+.++
T Consensus 229 i~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~ 262 (271)
T PRK14238 229 AARISDKTA-FFLNGYVNEYDDTDKIFSNPSDKRT 262 (271)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHcCCCCHHH
Confidence 778999996 5999999999999999887765443
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=284.77 Aligned_cols=213 Identities=15% Similarity=0.160 Sum_probs=161.0
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++...
T Consensus 9 ~~l~i~~v~~~~~~~---~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 9 TVLRTENLNVYYGSF---LA---VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred eEEEEeeeEEEECCE---EE---eecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 479999999999753 45 666999999999999999999999999999999986111013789999999876310
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..+++++|++.+++.++.+|+.++..... . .....+++.++++.+++...+
T Consensus 83 -------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~l------ 141 (264)
T PRK14243 83 -------------DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARING-Y-KGDMDELVERSLRQAALWDEV------ 141 (264)
T ss_pred -------------ccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcC-c-chHHHHHHHHHHHHhCchhhH------
Confidence 0111233556888999987776689999987643211 1 122334556667777774311
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
...+++.+.+||||||||++||||| |||+++||. +.|||++|| +++.
T Consensus 142 -------~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~ 214 (264)
T PRK14243 142 -------KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAA 214 (264)
T ss_pred -------HHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 0134788999999999999999999 999999753 689999999 5778
Q ss_pred cccchhhHhhh---------hhhhcCCCCccccccCCCCCCCC
Q 018083 298 SLTDRARIRTY---------LGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 298 ~~aDri~vvl~---------~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
.+|||++ +|+ +|++++.|++++++..|.+.+++
T Consensus 215 ~~~d~v~-~l~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 256 (264)
T PRK14243 215 RVSDMTA-FFNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATR 256 (264)
T ss_pred HhCCEEE-EEecccccccccCceEEEeCCHHHHHhCCCcHHHH
Confidence 9999996 487 79999999999998877665443
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=311.28 Aligned_cols=224 Identities=15% Similarity=0.167 Sum_probs=167.4
Q ss_pred hhhhhHHHHHHHHhHHHHHhh-----hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhh
Q 018083 61 QRRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 135 (361)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~-----~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~ 135 (361)
.+....|+.++++.+++.... ....++++|++++|+++. .++ |+++||+|++|++++|+||||||||||++
T Consensus 287 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ 362 (544)
T TIGR01842 287 ARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGK-KPT---LRGISFRLQAGEALAIIGPSGSGKSTLAR 362 (544)
T ss_pred HHHHHHHHHHHHhCCccccCCCCCCCCCCeEEEEEEEEEcCCCC-ccc---cccceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 334455899998654432111 123599999999996532 245 66699999999999999999999999999
Q ss_pred hhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecC
Q 018083 136 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 215 (361)
Q Consensus 136 ~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~ 215 (361)
+|+|+++ |++|+|.++|.++. .+.....+..+++|+|++.+|+.++.+|+.++..
T Consensus 363 ll~g~~~-----~~~G~i~~~g~~i~---------------~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~----- 417 (544)
T TIGR01842 363 LIVGIWP-----PTSGSVRLDGADLK---------------QWDRETFGKHIGYLPQDVELFPGTVAENIARFGE----- 417 (544)
T ss_pred HHhCCCC-----CCCceEEECCEehh---------------hCCHHHHhhheEEecCCcccccccHHHHHhccCC-----
Confidence 9999999 99999999998875 2344456778999999999999999999984321
Q ss_pred CChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--
Q 018083 216 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 284 (361)
Q Consensus 216 ~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-- 284 (361)
....+++.++++.+++.+.+...++.+.. ...+....||||||||++||||| ||||++||.
T Consensus 418 --~~~~~~~~~~~~~~~~~~~i~~l~~gl~t------~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~ 489 (544)
T TIGR01842 418 --NADPEKIIEAAKLAGVHELILRLPDGYDT------VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEG 489 (544)
T ss_pred --CCCHHHHHHHHHHhChHHHHHhCcccccc------ccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHH
Confidence 12233444555555554322111222222 23455778999999999999998 999999752
Q ss_pred --------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccc
Q 018083 285 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIF 322 (361)
Q Consensus 285 --------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~ 322 (361)
++|+|++|| ......||+++ +|++|++++.|+++++.
T Consensus 490 ~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 490 EQALANAIKALKARGITVVVITHRPSLLGCVDKIL-VLQDGRIARFGERDEVL 541 (544)
T ss_pred HHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE-EEECCEEEeeCCHHHHh
Confidence 689999999 44567899995 69999999999987764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=289.38 Aligned_cols=216 Identities=19% Similarity=0.149 Sum_probs=161.9
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+.+.....|++|+|.++|.++.
T Consensus 36 ~~~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEF---EA---VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred CceEEEEeeeEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 55689999999999753 35 6669999999999999999999999999999998531100138999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++.......+....++++.++++.+++...+
T Consensus 110 ~~-------------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---- 172 (286)
T PRK14275 110 GK-------------FTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV---- 172 (286)
T ss_pred hc-------------ccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch----
Confidence 10 0011123556888999987776699999987643211111223345666778888874211
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++.+.+||||||||++||||| ||||++||. ++|||++|| +.
T Consensus 173 ---------~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~ 243 (286)
T PRK14275 173 ---------SDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ 243 (286)
T ss_pred ---------hhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 0035788999999999999999999 999999753 679999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
+..+|||++ +|++|+++..|++++++..+.++.+
T Consensus 244 ~~~~~d~i~-~L~~G~i~~~g~~~~~~~~~~~~~~ 277 (286)
T PRK14275 244 ASRVSDYTM-FFYEGVLVEHAPTAQLFTNPKDRMT 277 (286)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHhCCCcHHH
Confidence 678999996 5999999999999988877655443
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=280.30 Aligned_cols=202 Identities=15% Similarity=0.220 Sum_probs=162.7
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|++. .+ |+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~i~~l~~~~~~~---~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~i~g~~~~~--- 66 (237)
T TIGR00968 1 IEIANISKRFGSF---QA---LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-----PDSGRIRLNGQDATR--- 66 (237)
T ss_pred CEEEEEEEEECCe---ee---eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999977641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.. ..+..++|++|++.+++. ++.+|+.+..... ........+.+.++++.+++.+
T Consensus 67 ------------~~--~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (237)
T TIGR00968 67 ------------VH--ARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR-KHPKAKIKARVEELLELVQLEG--------- 122 (237)
T ss_pred ------------CC--hhhcCEEEEecChhhccCCcHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCCHh---------
Confidence 11 124567889999888875 8899997654311 1122334466778899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
++++.+.+||+||+||++||||| |||+++||. ++|||++|| .++
T Consensus 123 --------~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~ 194 (237)
T TIGR00968 123 --------LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEA 194 (237)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45888999999999999999999 999999642 689999999 566
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
.++||+++ +|++|++++.|++++++..+..+++..++
T Consensus 195 ~~~~d~i~-~l~~g~i~~~~~~~~~~~~~~~~~~~~~~ 231 (237)
T TIGR00968 195 MEVADRIV-VMSNGKIEQIGSPDEVYDHPANPFVMSFL 231 (237)
T ss_pred HhhcCEEE-EEECCEEEEecCHHHHHcCCCcHHHHHhc
Confidence 78999996 59999999999999888766655544443
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=340.27 Aligned_cols=226 Identities=11% Similarity=0.019 Sum_probs=182.9
Q ss_pred hhhhhhHHHHHHHHhHHHHH---h--------hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCC
Q 018083 60 DQRRRDAVFREVLQSYDQLR---T--------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 128 (361)
Q Consensus 60 ~~~~~~~~~~~~l~~~~~~~---~--------~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGS 128 (361)
....++.|+.++++.+++.+ . +..+.|+++||+++|+++.. ++ |+|+||+|++||.+||+|+|||
T Consensus 1248 ~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~-~v---L~~is~~I~~GekiaIVGrTGs 1323 (1522)
T TIGR00957 1248 TNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLD-LV---LRHINVTIHGGEKVGIVGRTGA 1323 (1522)
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCc-cc---ccceeEEEcCCCEEEEECCCCC
Confidence 33445569999986544321 0 12246999999999976432 46 5669999999999999999999
Q ss_pred CcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccc
Q 018083 129 GKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG 208 (361)
Q Consensus 129 GKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~ 208 (361)
|||||+++|.|+++ |++|+|.+||.++. .+.+.+.|+.+++|+|++.+|..||++|+...
T Consensus 1324 GKSTL~~lL~rl~~-----~~~G~I~IdG~dI~---------------~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~ 1383 (1522)
T TIGR00957 1324 GKSSLTLGLFRINE-----SAEGEIIIDGLNIA---------------KIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF 1383 (1522)
T ss_pred CHHHHHHHHhcCcc-----CCCCeEEECCEEcc---------------ccCHHHHHhcCeEECCCCcccCccHHHHcCcc
Confidence 99999999999999 99999999999987 56778889999999999999999999999721
Q ss_pred eeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCc
Q 018083 209 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPY 279 (361)
Q Consensus 209 ~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt 279 (361)
. +...+++.++++.+++.+.+...++.+.+.|++ ....||||||||++||||| ||||
T Consensus 1384 -------~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e------~G~~LSgGQrQrl~LARALLr~~~ILiLDEaT 1449 (1522)
T TIGR00957 1384 -------S-QYSDEEVWWALELAHLKTFVSALPDKLDHECAE------GGENLSVGQRQLVCLARALLRKTKILVLDEAT 1449 (1522)
T ss_pred -------c-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecC------CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 1 233466778889998887665555566665544 3457999999999999998 9999
Q ss_pred eeecC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 280 LSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 280 ~~L~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+++|. ++|+|+|+| -.....||||+ ||++|+|++.|+|++++..
T Consensus 1450 SalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIl-Vld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1450 AAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVI-VLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 99763 899999999 44556699995 6999999999999999875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=279.06 Aligned_cols=177 Identities=19% Similarity=0.302 Sum_probs=155.1
Q ss_pred eccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCc
Q 018083 109 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 188 (361)
Q Consensus 109 ~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~ 188 (361)
+++|+++...++||.|+||||||||+|+|+|+.+ |+.|.|.+||.-+. .. ..++++...++.+|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-----PdeG~I~lngr~L~----Ds-------~k~i~lp~~~RriG 79 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR-----PDEGRIELNGRVLV----DA-------EKGIFLPPEKRRIG 79 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC-----ccccEEEECCEEee----cc-------cCCcccChhhheee
Confidence 4899999967999999999999999999999999 99999999996542 11 11455666778899
Q ss_pred ccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhh
Q 018083 189 DASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY 267 (361)
Q Consensus 189 ~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQ 267 (361)
||||+..+|++ +|..|+.||.... ......++...+|+.+ +++++|..||||+||
T Consensus 80 YVFQDARLFpH~tVrgNL~YG~~~~-------~~~~fd~iv~lLGI~h-----------------LL~R~P~~LSGGEkQ 135 (352)
T COG4148 80 YVFQDARLFPHYTVRGNLRYGMWKS-------MRAQFDQLVALLGIEH-----------------LLDRYPGTLSGGEKQ 135 (352)
T ss_pred eEeeccccccceEEecchhhhhccc-------chHhHHHHHHHhCcHH-----------------HHhhCCCccCcchhh
Confidence 99999999999 9999999987632 3455667788899999 789999999999999
Q ss_pred hhhhhhcc---------CCCceeecC-----------------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCcc
Q 018083 268 NQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAK 319 (361)
Q Consensus 268 RvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~ 319 (361)
||||+||| |||.++||. +.+|++||| ++++++||+++ +|++|++.+.|+.+
T Consensus 136 RVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV-~le~GkV~A~g~~e 214 (352)
T COG4148 136 RVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVV-VLENGKVKASGPLE 214 (352)
T ss_pred HHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEE-EecCCeEEecCcHH
Confidence 99999998 999999873 899999999 79999999995 69999999999999
Q ss_pred ccccCCC
Q 018083 320 QIFDIPE 326 (361)
Q Consensus 320 ~i~~~~~ 326 (361)
+++..+.
T Consensus 215 ~v~~~~~ 221 (352)
T COG4148 215 EVWGSPD 221 (352)
T ss_pred HHhcCcc
Confidence 9998864
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=305.92 Aligned_cols=196 Identities=16% Similarity=0.210 Sum_probs=158.9
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc--ccceeeeccccc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVG 160 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p--~~G~I~i~G~~i 160 (361)
+++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ | ++|+|+++|.++
T Consensus 3 ~~~l~~~nl~~~~~~~---~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 3 EYLLEMKNITKTFGGV---KA---LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-----HGTYEGEIIFEGEEL 71 (506)
T ss_pred CceEEEeeeEEEeCCe---Ee---ecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCeEEEECCEEC
Confidence 3579999999999753 46 566999999999999999999999999999999998 6 799999999876
Q ss_pred CcceEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEe--cCCChhhhhhhcccccccCCCcc
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~--~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
.. ....+ .+..++|++|++.+++. ++.+|+.++..... ..+.....+++.++++.+++..
T Consensus 72 ~~---------------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~- 135 (506)
T PRK13549 72 QA---------------SNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI- 135 (506)
T ss_pred CC---------------CCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-
Confidence 41 11111 23458899999877766 89999987654221 1122344567888999999976
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 291 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIii 291 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++
T Consensus 136 ----------------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~ 199 (506)
T PRK13549 136 ----------------NPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYI 199 (506)
T ss_pred ----------------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 34889999999999999999999 999999763 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCccccc
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIF 322 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~ 322 (361)
|| +.+..+||+++ +|++|+++..|+++++.
T Consensus 200 tH~~~~~~~~~d~v~-~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 200 SHKLNEVKAISDTIC-VIRDGRHIGTRPAAGMT 231 (506)
T ss_pred eCcHHHHHHhcCEEE-EEECCEEeeecccccCC
Confidence 99 56778999996 59999999999887663
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=277.18 Aligned_cols=194 Identities=19% Similarity=0.182 Sum_probs=148.4
Q ss_pred ccccccccceeeecCcce-eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 83 GSLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~-~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+++|+++|+++.|++... ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~ 75 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSI---LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD-----GSSGEVSLVGQPLH 75 (228)
T ss_pred CceEEEeeeEEEccCCCcceEE---EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeeEEECCEEcc
Confidence 357999999999975321 135 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
... ....... +..+++++|++.+++. ++.+|+.++.... .......++++.++++.+++.+
T Consensus 76 ~~~------------~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---- 138 (228)
T PRK10584 76 QMD------------EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR-GESSRQSRNGAKALLEQLGLGK---- 138 (228)
T ss_pred cCC------------HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHh----
Confidence 100 0000011 2357788888877665 7888887653211 1122345667888999999986
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH 293 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++||
T Consensus 139 -------------~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 205 (228)
T PRK10584 139 -------------RLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTH 205 (228)
T ss_pred -------------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 45889999999999999999999 999999652 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGI 315 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~ 315 (361)
......||+++ +|++|++++.
T Consensus 206 ~~~~~~~~d~i~-~l~~g~i~~~ 227 (228)
T PRK10584 206 DLQLAARCDRRL-RLVNGQLQEE 227 (228)
T ss_pred CHHHHHhCCEEE-EEECCEEEec
Confidence 22335699995 5999998653
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=281.70 Aligned_cols=200 Identities=16% Similarity=0.205 Sum_probs=156.3
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc---cceeeecccc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSV 159 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~---~G~I~i~G~~ 159 (361)
.++|+++||++.|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |+ +|+|.++|.+
T Consensus 2 ~~~l~~~nl~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 2 QTIIRVEKLAKTFNQH---QA---LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT-----GDKSAGSHIELLGRT 70 (262)
T ss_pred CcEEEEeeEEEEeCCe---EE---EecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCCceEEEECCEe
Confidence 3579999999999753 45 666999999999999999999999999999999998 65 5999999987
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe-------cCCChhhhhhhccccccc
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-------RSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~-------~~~~~~~~~~v~~~l~~~ 231 (361)
+... .. ........+..++|++|++.+++. ++.+|+.++..... .......++++.++++.+
T Consensus 71 ~~~~--------~~--~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (262)
T PRK09984 71 VQRE--------GR--LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV 140 (262)
T ss_pred cccc--------cc--cchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc
Confidence 6410 00 000111234567889999887775 89999986532100 001223456778899999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------C
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------D 285 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g 285 (361)
++.+ .+++.+.+||||||||++||||| ||||++||. |
T Consensus 141 ~l~~-----------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g 203 (262)
T PRK09984 141 GMVH-----------------FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDG 203 (262)
T ss_pred CCHH-----------------HHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 9976 45889999999999999999999 999999753 6
Q ss_pred ccEEEEEc--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 286 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 286 ~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
+|||++|| ..+..+||+++ +|++|+++..|+++++
T Consensus 204 ~tvii~tH~~~~~~~~~d~i~-~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 204 ITVVVTLHQVDYALRYCERIV-ALRQGHVFYDGSSQQF 240 (262)
T ss_pred CEEEEEeCCHHHHHHhCCEEE-EEECCEEEEeCCHHHh
Confidence 89999999 45789999996 5999999999988764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=305.40 Aligned_cols=195 Identities=13% Similarity=0.188 Sum_probs=158.5
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 3 ~~i~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~- 70 (501)
T PRK10762 3 ALLQLKGIDKAFPGV---KA---LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-----RDAGSILYLGKEVTF- 70 (501)
T ss_pred ceEEEeeeEEEeCCe---EE---eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC-
Confidence 579999999999752 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeee-ecCCCCcccccchHHHHH-HHHhccccceeEEe---cCCChhhhhhhcccccccCCCccee
Q 018083 164 YFLQEYTIPRGSNSFSLY-DTRSLSDDASDNINMIKL-WIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~-d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~---~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.... ..+..+++++|++.+++. ++.+|+.++..... ..+....++++.++++.+++.+
T Consensus 71 --------------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--- 133 (501)
T PRK10762 71 --------------NGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF--- 133 (501)
T ss_pred --------------CCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC---
Confidence 0000 123457899999877766 89999988653211 1112334566788999999987
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH 293 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 134 --------------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sH 199 (501)
T PRK10762 134 --------------SSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISH 199 (501)
T ss_pred --------------CccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 34889999999999999999999 999999763 789999999
Q ss_pred --CccccccchhhHhhhhhhhcCCCCccccc
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIPPAKQIF 322 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g~~~~i~ 322 (361)
+++..+||+++ +|++|+++..++++++.
T Consensus 200 d~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 200 RLKEIFEICDDVT-VFRDGQFIAEREVADLT 229 (501)
T ss_pred CHHHHHHhCCEEE-EEeCCEEEEecCcCcCC
Confidence 57779999996 59999999998887653
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=281.36 Aligned_cols=207 Identities=18% Similarity=0.221 Sum_probs=156.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-----cceeeecccc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSSV 159 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-----~G~I~i~G~~ 159 (361)
+|+++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~~~~~~G~i~~~g~~ 72 (252)
T PRK14272 4 LLSAQDVNIYYGDK---QA---VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD-----LTPGARVTGRILLDGQD 72 (252)
T ss_pred EEEEeeeEEEECCE---Ee---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceeEEECCEE
Confidence 68999999999752 45 666999999999999999999999999999999997 53 8999999987
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
+... .......+..++|++|++.+++. ++.+|+.++.........+...+.+.++++.+++...+
T Consensus 73 ~~~~-------------~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l- 138 (252)
T PRK14272 73 IYGP-------------RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV- 138 (252)
T ss_pred cccC-------------ccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh-
Confidence 6410 01112334567889999887775 88899876542111111222344555556666653211
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH- 293 (361)
...+++++.+||||||||++||||| |||+++||. ++|||++||
T Consensus 139 ------------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~ 206 (252)
T PRK14272 139 ------------KDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN 206 (252)
T ss_pred ------------hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 0134788999999999999999999 999999753 699999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
..+..+|||++ +|++|++++.|++++++..|.+..
T Consensus 207 ~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~ 242 (252)
T PRK14272 207 MHQAARVSDTTS-FFLVGDLVEHGPTDQLFTNPRDER 242 (252)
T ss_pred HHHHHHhCCEEE-EEECCEEEEeCCHHHHHhCcCcHH
Confidence 56778999996 599999999999999987765544
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=283.83 Aligned_cols=209 Identities=12% Similarity=0.071 Sum_probs=156.7
Q ss_pred ccccccccceeeecCc-------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 83 GSLTDAKNKILSYTPG-------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~-------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
|++|+++||++.|+.+ . ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~-~~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~sG~i~~ 71 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQH-QTV---LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES-----PSQGNVSW 71 (268)
T ss_pred CceEEEeceEEEecCCccccccCc-eee---EeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEE
Confidence 3579999999999731 1 245 666999999999999999999999999999999999 99999999
Q ss_pred cccccCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHH-HHHHhccccceeEEecCCChhhhhhhcccccccC
Q 018083 156 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 156 ~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~g 232 (361)
+|.++.... .......+..++|++|++. +++ .++.+++.+...............++.++++.++
T Consensus 72 ~g~~~~~~~------------~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g 139 (268)
T PRK10419 72 RGEPLAKLN------------RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVD 139 (268)
T ss_pred CCEeccccC------------hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcC
Confidence 998764100 0001123456788888863 222 2666666543221111122334456788899999
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------Cc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 286 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~ 286 (361)
+... ++++.+.+||||||||++||||| ||||++||. +.
T Consensus 140 l~~~----------------~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~ 203 (268)
T PRK10419 140 LDDS----------------VLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGT 203 (268)
T ss_pred CChh----------------HhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCc
Confidence 9632 35889999999999999999999 999999752 78
Q ss_pred cEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 287 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
|||++|| .++..+||+++ +|++|++++.|++++++. +.++++
T Consensus 204 tiiivsH~~~~i~~~~d~i~-~l~~G~i~~~g~~~~~~~-~~~~~~ 247 (268)
T PRK10419 204 ACLFITHDLRLVERFCQRVM-VMDNGQIVETQPVGDKLT-FSSPAG 247 (268)
T ss_pred EEEEEECCHHHHHHhCCEEE-EEECCEEeeeCChhhccC-CCCHHH
Confidence 9999999 56778999996 599999999999988874 444444
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=279.86 Aligned_cols=214 Identities=17% Similarity=0.183 Sum_probs=164.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+.......|++|+|.++|.++...
T Consensus 3 ~l~~~~v~~~~~~~---~~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~- 75 (250)
T PRK14266 3 RIEVENLNTYFDDA---HI---LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP- 75 (250)
T ss_pred EEEEEeEEEEeCCe---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccc-
Confidence 58899999999753 45 666999999999999999999999999999999874111113899999999876410
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.....+.+..++|++|++.+++.++.+|+.++.......+....++++.++++.+++.+.+
T Consensus 76 ------------~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l------- 136 (250)
T PRK14266 76 ------------AVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEV------- 136 (250)
T ss_pred ------------cccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhH-------
Confidence 0112234567889999988777789999987543211112233456677888888885421
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~ 298 (361)
...+++.+.+||+|||||++||||| |||+++||. +.|||++|| .++..
T Consensus 137 ------~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 137 ------KDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATR 210 (250)
T ss_pred ------HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHh
Confidence 0135788999999999999999999 999999753 789999999 57788
Q ss_pred ccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 299 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
+||+++ +|++|++++.|++++++..|..+.+.
T Consensus 211 ~~~~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~ 242 (250)
T PRK14266 211 VSKYTS-FFLNGEIIESGLTDQIFINPKDKRTE 242 (250)
T ss_pred hcCEEE-EEECCeEEEeCCHHHHHhCCCChHHH
Confidence 999995 59999999999999998777665543
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=282.87 Aligned_cols=208 Identities=16% Similarity=0.216 Sum_probs=159.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-----cceeeeccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSS 158 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-----~G~I~i~G~ 158 (361)
++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |+ +|+|.++|+
T Consensus 6 ~~l~~~nl~~~~~~~---~i---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~g~i~~~G~i~~~g~ 74 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ---KI---LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-----LESEVRVEGRVEFFNQ 74 (261)
T ss_pred ceEEEeeEEEEeCCe---eE---eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-----CCCCccccceEEECCE
Confidence 479999999999753 45 666999999999999999999999999999999998 64 799999987
Q ss_pred ccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 159 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 159 ~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
++... .......+..+++++|++.+++.++.+|+.++.......+..+..+++.++++.+++.+.+.
T Consensus 75 ~i~~~-------------~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 141 (261)
T PRK14258 75 NIYER-------------RVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK 141 (261)
T ss_pred Ehhcc-------------ccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh
Confidence 75300 01112234567888888777767888998765321111112233456677888888753110
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
..+++.+.+|||||+||++||||| ||||++||. +.|||++|
T Consensus 142 -------------~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivs 208 (261)
T PRK14258 142 -------------HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVS 208 (261)
T ss_pred -------------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 035788899999999999999999 999999642 78999999
Q ss_pred c--CccccccchhhHhhhh-----hhhcCCCCccccccCCCCCC
Q 018083 293 H--GDLLSLTDRARIRTYL-----GELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~-----G~iv~~g~~~~i~~~~~~~~ 329 (361)
| ..+..+||+++ +|++ |++++.|++++++..|....
T Consensus 209 H~~~~i~~~~d~i~-~l~~~~~~~G~i~~~~~~~~~~~~~~~~~ 251 (261)
T PRK14258 209 HNLHQVSRLSDFTA-FFKGNENRIGQLVEFGLTKKIFNSPHDSR 251 (261)
T ss_pred CCHHHHHHhcCEEE-EEccCCCcCceEEEeCCHHHHHhCCCCHH
Confidence 9 57789999996 5999 99999999999988776544
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=308.80 Aligned_cols=212 Identities=12% Similarity=0.170 Sum_probs=162.0
Q ss_pred hccccccccceeeecCc--------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee
Q 018083 82 IGSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 153 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~--------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I 153 (361)
..++|+++|+++.|+.+ ....+ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~------~~G~i 342 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVV---VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN------SQGEI 342 (529)
T ss_pred CCCcccccCcEEEeecCcccccccccccee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC------CCcEE
Confidence 34589999999999521 01246 566999999999999999999999999999999974 68999
Q ss_pred eecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHH-HHHhccccceeEEe-cCCChhhhhhhccccc
Q 018083 154 TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELVIR-RSDSSSLRNRMRCKAH 229 (361)
Q Consensus 154 ~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~-~~~~~~~~~~v~~~l~ 229 (361)
+++|+++... . .......+..++|++|++. +++. ++.+|+.++..... ..+....++++.++++
T Consensus 343 ~~~g~~i~~~--------~----~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~ 410 (529)
T PRK15134 343 WFDGQPLHNL--------N----RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVME 410 (529)
T ss_pred EECCEEcccc--------c----hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHH
Confidence 9999876410 0 0001112345788999863 5554 88899987643211 1222344567788899
Q ss_pred ccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------
Q 018083 230 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 284 (361)
Q Consensus 230 ~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------- 284 (361)
.+++.+. .+++++.+||||||||++||||| ||||++||.
T Consensus 411 ~~~l~~~----------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 411 EVGLDPE----------------TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred HcCCCHH----------------HHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 9999631 35889999999999999999999 999999653
Q ss_pred -CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 285 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 285 -g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
|+|||+||| +.+..+|||++ +|++|++++.|++++++..|.+++++
T Consensus 475 ~~~tvi~vsHd~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~ 523 (529)
T PRK15134 475 HQLAYLFISHDLHVVRALCHQVI-VLRQGEVVEQGDCERVFAAPQQEYTR 523 (529)
T ss_pred hCCEEEEEeCCHHHHHHhcCeEE-EEECCEEEEEcCHHHHhcCCCChHHH
Confidence 789999999 56778999996 59999999999999998877665543
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=304.66 Aligned_cols=197 Identities=16% Similarity=0.176 Sum_probs=158.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~ 71 (510)
T PRK09700 3 TPYISMAGIGKSFGPV---HA---LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-----PTKGTITINNINYNK 71 (510)
T ss_pred CceEEEeeeEEEcCCe---EE---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-----CCccEEEECCEECCC
Confidence 3579999999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEE---ecC---CChhhhhhhcccccccCCC
Q 018083 163 TYFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVI---RRS---DSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~---~~~---~~~~~~~~v~~~l~~~gl~ 234 (361)
..... .+..++|++|++.+++. ++.+|+.++.... ... +..+..+++.++++.+++.
T Consensus 72 ---------------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 136 (510)
T PRK09700 72 ---------------LDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK 136 (510)
T ss_pred ---------------CCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC
Confidence 11111 23458889999877765 8899998754311 111 1123456788899999998
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
+ .+++++.+||||||||++||||| ||||++||. |+|||
T Consensus 137 ~-----------------~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tii 199 (510)
T PRK09700 137 V-----------------DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV 199 (510)
T ss_pred C-----------------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 6 34889999999999999999999 999999753 79999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
++|| +.+..+||+++ +|++|+++..|++++++.
T Consensus 200 ivsHd~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 200 YISHKLAEIRRICDRYT-VMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred EEeCCHHHHHHhCCEEE-EEECCEEeeecchhhCCH
Confidence 9999 56778999996 599999999998877643
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=285.33 Aligned_cols=215 Identities=16% Similarity=0.164 Sum_probs=161.1
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|+.. .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|+++.
T Consensus 17 ~~~~l~~~nl~~~~~~~---~~---l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGF---LA---LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred CCceEEEeeEEEEeCCe---EE---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 44589999999999753 45 6669999999999999999999999999999999861100026899999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++..... . .....+.+.++++.+++...+
T Consensus 91 ~~-------------~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~l---- 151 (274)
T PRK14265 91 DS-------------QINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANG-Y-KGNLDELVEDSLRRAAIWEEV---- 151 (274)
T ss_pred cc-------------cchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcC-c-hHHHHHHHHHHHHHcccchhh----
Confidence 10 0111123456888999987776688999987532111 1 112234455667777764311
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++++.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 152 ---------~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~ 222 (274)
T PRK14265 152 ---------KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQ 222 (274)
T ss_pred ---------HHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 0135788999999999999999999 999999753 689999999 57
Q ss_pred cccccchhhHhhh---------hhhhcCCCCccccccCCCCCCCC
Q 018083 296 LLSLTDRARIRTY---------LGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 296 ~~~~aDri~vvl~---------~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
+..+|||++ +|+ +|++++.|++++++..+.++.++
T Consensus 223 ~~~~~d~i~-~l~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~ 266 (274)
T PRK14265 223 ASRVADWTA-FFNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEAR 266 (274)
T ss_pred HHHhCCEEE-EEecccccccccCceEEEeCCHHHHHhCCCCHHHH
Confidence 779999996 587 89999999999998877655543
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=263.90 Aligned_cols=188 Identities=16% Similarity=0.209 Sum_probs=159.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
|+++.+.+++.+|.... ..+ |+|+|++|.+||+++++||||||||||+|+++|+.+ |..|.|.++|+.+.+
T Consensus 1 M~~l~~~~~sl~y~g~~-~~~---le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-----P~~G~i~l~~r~i~g 71 (259)
T COG4525 1 MCMLNVSHLSLSYEGKP-RSA---LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-----PSRGSIQLNGRRIEG 71 (259)
T ss_pred CceeehhheEEecCCcc-hhh---hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-----cccceEEECCEeccC
Confidence 35788999999997654 346 566999999999999999999999999999999999 999999999988862
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.-..-+.|||+..++|. ++.+|+.||+... +.++...++.+.+.+..+|+.+
T Consensus 72 --------------------PgaergvVFQ~~~LlPWl~~~dNvafgL~l~-Gi~k~~R~~~a~q~l~~VgL~~------ 124 (259)
T COG4525 72 --------------------PGAERGVVFQNEALLPWLNVIDNVAFGLQLR-GIEKAQRREIAHQMLALVGLEG------ 124 (259)
T ss_pred --------------------CCccceeEeccCccchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhCccc------
Confidence 11224678999999999 9999999998743 5666777888899999999998
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
..++++.+||||||||+.||||| |||+.+||. |+.+++|||
T Consensus 125 -----------~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i 193 (259)
T COG4525 125 -----------AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI 193 (259)
T ss_pred -----------ccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH
Confidence 34899999999999999999999 999999652 999999999
Q ss_pred CccccccchhhHhhhh--hhhcCCCCc
Q 018083 294 GDLLSLTDRARIRTYL--GELLGIPPA 318 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~--G~iv~~g~~ 318 (361)
+++.-+++|++ +|.. |++++.-++
T Consensus 194 eEAlflatrLv-vlsp~pgRvv~~~~~ 219 (259)
T COG4525 194 EEALFLATRLV-VLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHhhhheeE-EecCCCceeeEecCC
Confidence 68889999994 5874 677765444
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=277.16 Aligned_cols=194 Identities=15% Similarity=0.215 Sum_probs=156.8
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|+.. .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~i---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--- 66 (232)
T cd03300 1 IELENVSKFYGGF---VA---LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-----PTSGEILLDGKDITN--- 66 (232)
T ss_pred CEEEeEEEEeCCe---ee---eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc---
Confidence 4689999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.. ..+..+++++|++.++.. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 67 ------------~~--~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (232)
T cd03300 67 ------------LP--PHKRPVNTVFQNYALFPHLTVFENIAFGLRLK-KLPKAEIKERVAEALDLVQLEG--------- 122 (232)
T ss_pred ------------CC--hhhcceEEEecccccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch---------
Confidence 00 113457888998887765 8888887653311 1122344567778899999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++.+..||+||+||++||||| |||+++||. +.|||++|| .++
T Consensus 123 --------~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~ 194 (232)
T cd03300 123 --------YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA 194 (232)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999642 789999999 466
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
..+||+++ +|++|++++.|++++++..+.
T Consensus 195 ~~~~d~i~-~l~~G~~~~~~~~~~~~~~~~ 223 (232)
T cd03300 195 LTMSDRIA-VMNKGKIQQIGTPEEIYEEPA 223 (232)
T ss_pred HHhcCEEE-EEECCEEEecCCHHHHHhCCc
Confidence 78999996 599999999998888876543
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=278.04 Aligned_cols=193 Identities=16% Similarity=0.268 Sum_probs=156.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|++ ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 l~~~~l~~~~~~----~~---l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-----p~~G~v~i~g~~~~~--- 65 (235)
T cd03299 1 LKVENLSKDWKE----FK---LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-----PDSGKILLNGKDITN--- 65 (235)
T ss_pred CeeEeEEEEeCC----ce---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcCc---
Confidence 568999999974 24 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.. ..+..+++++|++.+++. ++.+|+.++.... ..+..+..+++.++++.+++.+
T Consensus 66 ------------~~--~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 121 (235)
T cd03299 66 ------------LP--PEKRDISYVPQNYALFPHMTVYKNIAYGLKKR-KVDKKEIERKVLEIAEMLGIDH--------- 121 (235)
T ss_pred ------------CC--hhHcCEEEEeecCccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 01 113457888888877754 8888887654321 1223445567788899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+|||||+||++||||| ||||++||. ++|||++|| ..+
T Consensus 122 --------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~ 193 (235)
T cd03299 122 --------LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193 (235)
T ss_pred --------HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 45889999999999999999999 999999642 789999999 466
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
..+||+++ +|++|++++.|+++++...+.
T Consensus 194 ~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~ 222 (235)
T cd03299 194 WALADKVA-IMLNGKLIQVGKPEEVFKKPK 222 (235)
T ss_pred HHhCCEEE-EEECCEEEEecCHHHHHhCcc
Confidence 78999996 599999999998887766543
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=276.29 Aligned_cols=188 Identities=13% Similarity=0.149 Sum_probs=148.2
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++||++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (230)
T TIGR03410 1 LEVSNLNVYYGQS---HI---LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIRLDGEDITK--- 66 (230)
T ss_pred CEEEeEEEEeCCe---EE---ecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCC---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999977641
Q ss_pred eEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccC-CCcceeEEEE
Q 018083 166 LQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKVN 242 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~g-l~~~~~~~~~ 242 (361)
....+ .+..++|++|++.+++. ++.+|+.++..... ....+.+.++++.++ +.+
T Consensus 67 ------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~~l~~~~~l~~------- 123 (230)
T TIGR03410 67 ------------LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP----RRSRKIPDEIYELFPVLKE------- 123 (230)
T ss_pred ------------CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC----cchHHHHHHHHHHHHhHHH-------
Confidence 11111 13457889999887776 89999876543211 111233455566665 444
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
..++++.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 124 ----------~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 193 (230)
T TIGR03410 124 ----------MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD 193 (230)
T ss_pred ----------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence 35888999999999999999999 999999653 689999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCcccc
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
++..+||+++ ++++|++++.|+++++
T Consensus 194 ~~~~~~d~v~-~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 194 FARELADRYY-VMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHc
Confidence 6778999996 5999999999988765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=279.84 Aligned_cols=212 Identities=17% Similarity=0.174 Sum_probs=159.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
-+++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++.....|++|+|.++|+++...
T Consensus 6 ~~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~-- 77 (251)
T PRK14244 6 ASVKNLNLWYGSK---QI---LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSV-- 77 (251)
T ss_pred EEeeeEEEEECCe---ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhc--
Confidence 4689999999752 45 666999999999999999999999999999999975110014699999999876310
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec-CCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~-~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.......+..++|++|++.+++.++.+|+.++...... ......++.+.++++.+++.+.+.
T Consensus 78 -----------~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------ 140 (251)
T PRK14244 78 -----------DTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG------ 140 (251)
T ss_pred -----------ccchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh------
Confidence 00111234567889999877767888998765321111 011234456778889999865210
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~ 298 (361)
..+++.+.+||||||||++||||| ||||++||. ++|||++|| .++..
T Consensus 141 -------~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~ 213 (251)
T PRK14244 141 -------DRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKK 213 (251)
T ss_pred -------hHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh
Confidence 024678899999999999999999 999999753 799999999 46778
Q ss_pred ccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 299 LTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
+|||++ +|++|+++..|++++++..+.++++
T Consensus 214 ~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~ 244 (251)
T PRK14244 214 VSDRVA-FFQSGRIVEYNTTQEIFKNPQSSKT 244 (251)
T ss_pred hcCEEE-EEECCEEEEeCCHHHHhcCCCChHH
Confidence 999996 5999999999999999887765543
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=281.87 Aligned_cols=216 Identities=17% Similarity=0.177 Sum_probs=163.8
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.-..
T Consensus 7 ~~~~i~~~~~~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-----~~~G~v~~~G~~~~ 75 (257)
T PRK14246 7 AEDVFNISRLYLYINDK---AI---LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-----IYDSKIKVDGKVLY 75 (257)
T ss_pred hhhheeeeeEEEecCCc---ee---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCcCceeEcCEEEE
Confidence 56789999999999763 45 666999999999999999999999999999999999 99988877764211
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.+ ..+. .......+..++|++|++.+++. ++.+|+.++..........+.++++.++++.+++.+.+
T Consensus 76 ~g-----~~~~----~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 143 (257)
T PRK14246 76 FG-----KDIF----QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV--- 143 (257)
T ss_pred CC-----cccc----cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc---
Confidence 00 0000 11112345668889999888775 89999987643211112234456677888889986411
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--C
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 294 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~ 294 (361)
...+++.+..||+|||||++||||| ||||++||. +.|||++|| .
T Consensus 144 ----------~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~ 213 (257)
T PRK14246 144 ----------YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQ 213 (257)
T ss_pred ----------hhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHH
Confidence 0034778999999999999999999 999999753 689999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
.+..+||+++ +|++|++++.|++++++..|.+++++
T Consensus 214 ~~~~~~d~v~-~l~~g~i~~~g~~~~~~~~~~~~~~~ 249 (257)
T PRK14246 214 QVARVADYVA-FLYNGELVEWGSSNEIFTSPKNELTE 249 (257)
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHHHhCCCcHHHH
Confidence 6678999996 59999999999999998877655543
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=272.78 Aligned_cols=199 Identities=15% Similarity=0.219 Sum_probs=145.6
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.|+++|++++|++.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~~--~~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~--- 68 (229)
T cd03254 2 EIEFENVNFSYDEKK--PV---LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-----PQKGQILIDGIDIR--- 68 (229)
T ss_pred eEEEEEEEEecCCCC--cc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEeHH---
Confidence 378999999997432 35 666999999999999999999999999999999999 99999999997764
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.......+..++|++|++.++..++.+|+.+.... ....++.++++.+++.......++.
T Consensus 69 ------------~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~- 128 (229)
T cd03254 69 ------------DISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPN-------ATDEEVIEAAKEAGAHDFIMKLPNG- 128 (229)
T ss_pred ------------HcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCC-------CCHHHHHHHHHHhChHHHHHhCccc-
Confidence 11112234567889999888877999999864321 1112233334444433210000000
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~ 298 (361)
-...+++.+.+||||||||++||||| |||+++||. ++|||++|| ..+ .
T Consensus 129 -----~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~ 202 (229)
T cd03254 129 -----YDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTI-K 202 (229)
T ss_pred -----ccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-h
Confidence 00023667899999999999999999 999999763 789999999 344 4
Q ss_pred ccchhhHhhhhhhhcCCCCcccccc
Q 018083 299 LTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
.||+++ +|++|+++..++.++++.
T Consensus 203 ~~d~i~-~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 203 NADKIL-VLDDGKIIEEGTHDELLA 226 (229)
T ss_pred hCCEEE-EEeCCeEEEeCCHHHHHh
Confidence 599996 599999998888766654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=274.55 Aligned_cols=193 Identities=11% Similarity=0.119 Sum_probs=146.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|+++.|+.+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~-~~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~---- 67 (237)
T cd03252 1 ITFEHVRFRYKPDG-PVI---LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-----PENGRVLVDGHDLA---- 67 (237)
T ss_pred CEEEEEEEecCCCC-ccc---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCeehH----
Confidence 57899999996432 245 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhh-----hhccccccc--CCCccee
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN-----RMRCKAHKI--GCEPSVI 238 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gl~~~~~ 238 (361)
.......+..+++++|++.++..++.+|+.++.. ........+ .+.++++.+ ++..
T Consensus 68 -----------~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--- 130 (237)
T cd03252 68 -----------LADPAWLRRQVGVVLQENVLFNRSIRDNIALADP---GMSMERVIEAAKLAGAHDFISELPEGYDT--- 130 (237)
T ss_pred -----------hcCHHHHhhcEEEEcCCchhccchHHHHhhccCC---CCCHHHHHHHHHHcCcHHHHHhCcccccc---
Confidence 1111223456888999988776799999986432 111111111 111222222 3333
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH- 293 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 131 --------------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~ 196 (237)
T cd03252 131 --------------IVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHR 196 (237)
T ss_pred --------------hhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 34778999999999999999999 999999753 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+.+ ..||+++ +|++|+++..|++++++..
T Consensus 197 ~~~~-~~~d~v~-~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 197 LSTV-KNADRII-VMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred HHHH-HhCCEEE-EEECCEEEEEcCHHHHHhc
Confidence 344 5699996 5999999999998887654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=304.21 Aligned_cols=205 Identities=16% Similarity=0.163 Sum_probs=162.4
Q ss_pred hhhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhh
Q 018083 63 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 136 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~ 136 (361)
....|+.++++.+++.... ..+.|+++|++++|+++. .++ |+++||+|++|++++|+||||||||||+|+
T Consensus 292 ~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~i---l~~i~l~i~~G~~~~ivG~sGsGKSTL~~l 367 (529)
T TIGR02857 292 AAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPGRR-APA---LRPVSFTVPPGERVALVGPSGAGKSTLLNL 367 (529)
T ss_pred HHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCCCC-ccc---ccceeEEECCCCEEEEECCCCCCHHHHHHH
Confidence 3344888888633221111 113589999999997643 145 666999999999999999999999999999
Q ss_pred hhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCC
Q 018083 137 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 216 (361)
Q Consensus 137 I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~ 216 (361)
|+|+++ |++|+|.++|.++. .+...+.+..+++|+|++.+|..++.+|+.++..
T Consensus 368 l~g~~~-----~~~G~I~~~g~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~------ 421 (529)
T TIGR02857 368 LLGFVD-----PTEGSIAVNGVPLA---------------DADADSWRDQIAWVPQHPFLFAGTIAENIRLARP------ 421 (529)
T ss_pred HhcCCC-----CCCcEEEECCEehh---------------hCCHHHHHhheEEEcCCCcccCcCHHHHHhccCC------
Confidence 999999 99999999999886 3555677888999999999999999999987543
Q ss_pred ChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---
Q 018083 217 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 284 (361)
Q Consensus 217 ~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--- 284 (361)
...++++.++++.+++.+.+.+.++.+.+++++ ....||||||||++||||| ||||++||.
T Consensus 422 -~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e------~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~ 494 (529)
T TIGR02857 422 -DASDAEIRRALERAGLDEFVAALPQGLDTLIGE------GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETE 494 (529)
T ss_pred -CCCHHHHHHHHHHcCcHHHHHhCcccccchhcc------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 223466778888899887666666666665444 4568999999999999999 999999763
Q ss_pred ------------CccEEEEEc-Cccccccchhh
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRAR 304 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~ 304 (361)
++|+|+||| ....+.||+|+
T Consensus 495 ~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~ 527 (529)
T TIGR02857 495 ALVTEALRALAQGRTVLLVTHRLALAERADRIV 527 (529)
T ss_pred HHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEE
Confidence 799999999 44557799994
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=304.32 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=158.5
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 8 ~~~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 76 (510)
T PRK15439 8 APPLLCARSISKQYSGV---EV---LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP-----PDSGTLEIGGNPCA 76 (510)
T ss_pred CCceEEEEeEEEEeCCc---ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence 34579999999999753 45 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
. ....+. +..++|++|++.+++. ++.+|+.++... ....++++.++++.+++.+
T Consensus 77 ~---------------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-----~~~~~~~~~~~l~~~~l~~---- 132 (510)
T PRK15439 77 R---------------LTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-----RQASMQKMKQLLAALGCQL---- 132 (510)
T ss_pred C---------------CCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-----chHHHHHHHHHHHHcCCCc----
Confidence 1 111111 2347889998877766 899999876431 2334567888999999986
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH- 293 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 133 -------------~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd 199 (510)
T PRK15439 133 -------------DLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHK 199 (510)
T ss_pred -------------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35889999999999999999999 999999763 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+.+..+||+++ +|++|+++..|+++++..
T Consensus 200 ~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 200 LPEIRQLADRIS-VMRDGTIALSGKTADLST 229 (510)
T ss_pred HHHHHHhCCEEE-EEECCEEEEecChHHcCH
Confidence 56778999996 599999999998877653
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=271.67 Aligned_cols=190 Identities=9% Similarity=0.070 Sum_probs=149.5
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 5 ~~~i~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~- 72 (225)
T PRK10247 5 SPLLQLQNVGYLAGDA---KI---LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDIS- 72 (225)
T ss_pred CceEEEeccEEeeCCc---ee---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEcC-
Confidence 3479999999999753 45 666999999999999999999999999999999999 99999999997764
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.......+..+++++|++.+++.++.+|+.+...... .....+++.++++.+++.+.
T Consensus 73 --------------~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~---~~~~~~~~~~~l~~~~l~~~------ 129 (225)
T PRK10247 73 --------------TLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRN---QQPDPAIFLDDLERFALPDT------ 129 (225)
T ss_pred --------------cCCHHHHHhccEEEecccccccccHHHHHHhHHhhcC---CChHHHHHHHHHHHcCCChH------
Confidence 1111223456788999988777799999876432111 11123456778999999632
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+.++++.+|||||+||++||||| ||||++||. +.|||++|| +
T Consensus 130 ----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 130 ----------ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred ----------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 34889999999999999999999 999999653 789999999 3
Q ss_pred ccccccchhhHhh-hhhhhcCCCCcc
Q 018083 295 DLLSLTDRARIRT-YLGELLGIPPAK 319 (361)
Q Consensus 295 ~~~~~aDri~vvl-~~G~iv~~g~~~ 319 (361)
.+ ..||++++ | +++..+++|+++
T Consensus 200 ~~-~~~d~i~~-l~~~~~~~~~~~~~ 223 (225)
T PRK10247 200 EI-NHADKVIT-LQPHAGEMQEARYE 223 (225)
T ss_pred HH-HhCCEEEE-EecccchHhhhhhc
Confidence 44 56999964 7 567777888764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=305.84 Aligned_cols=214 Identities=14% Similarity=0.138 Sum_probs=158.3
Q ss_pred ccccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 83 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.++|+++|++++|+++ ....+ |+++||+|++||+++|+||||||||||+|+|+|++++....|++|+|.++|.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~---l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTV---VNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred CceEEEeceEEEecCCCCceee---eeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence 3579999999999642 11246 5669999999999999999999999999999999982111127999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecC-CCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
... .......+ ..+++++|++. +++. ++.+++.+........+.....+++.++++.+++.+..
T Consensus 80 ~~~------------~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 80 HAS------------EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred cCC------------HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH
Confidence 100 00011112 45888999874 3333 67777664321111223344567788899999997510
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 291 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIii 291 (361)
..+++++.+||||||||++||||| ||||++||. |+|||+|
T Consensus 148 --------------~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~v 213 (529)
T PRK15134 148 --------------KRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFI 213 (529)
T ss_pred --------------HHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 024889999999999999999999 999999753 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|| +.+..+||||+ +|++|+++..|++++++..+.
T Consensus 214 tHd~~~~~~~~dri~-~l~~G~i~~~g~~~~~~~~~~ 249 (529)
T PRK15134 214 THNLSIVRKLADRVA-VMQNGRCVEQNRAATLFSAPT 249 (529)
T ss_pred cCcHHHHHHhcCEEE-EEECCEEEEeCCHHHHhhCCC
Confidence 99 56778999996 599999999999988876554
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=278.25 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=149.9
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc----ccceeeeccccc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVG 160 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p----~~G~I~i~G~~i 160 (361)
+|+++|++++| +. ++ |+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++
T Consensus 4 ~l~~~~l~~~~-~~---~i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 4 QIELRNIALQA-AQ---PL---VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-----AGVRQTAGRVLLDGKPV 71 (254)
T ss_pred EEEEeCeEEEe-cc---ce---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCcCCEEEECCeec
Confidence 68999999999 32 35 666999999999999999999999999999999998 7 999999999876
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchH-HH-HH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MI-KL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~-~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
.. .. ..+..++|++|++. .+ +. ++.+++.+..... .. ....+++.++++.+++.+..
T Consensus 72 ~~---------------~~--~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~l~~~~l~~~~ 131 (254)
T PRK10418 72 AP---------------CA--LRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL-GK--PADDATLTAALEAVGLENAA 131 (254)
T ss_pred cc---------------cc--cccceEEEEecCCccccCccccHHHHHHHHHHHc-CC--ChHHHHHHHHHHHcCCCChh
Confidence 41 00 01234667777753 12 21 4445544322111 11 12235678889999997520
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 291 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIii 291 (361)
.++++.+.+||||||||++||||| ||||++||. |.|||++
T Consensus 132 --------------~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~ 197 (254)
T PRK10418 132 --------------RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLV 197 (254)
T ss_pred --------------hhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 024788999999999999999999 999999652 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
|| +++..+|||++ +|++|+++..|++++++..+.++.
T Consensus 198 sH~~~~~~~~~d~v~-~l~~G~i~~~~~~~~~~~~~~~~~ 236 (254)
T PRK10418 198 THDMGVVARLADDVA-VMSHGRIVEQGDVETLFNAPKHAV 236 (254)
T ss_pred ecCHHHHHHhCCEEE-EEECCEEEEecCHHHHhhCCCCHH
Confidence 99 46678999996 599999999999998887665443
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=335.86 Aligned_cols=203 Identities=11% Similarity=0.081 Sum_probs=170.9
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.|+++||+++|+++.. .+ |+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.++.
T Consensus 1308 ~I~f~nVsf~Y~~~~~-~v---L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~-----p~~G~I~IDG~di~--- 1375 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLP-LV---LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-----VCGGEIRVNGREIG--- 1375 (1560)
T ss_pred eEEEEEEEEEeCCCCC-ce---eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcc---
Confidence 5999999999976532 35 666999999999999999999999999999999999 99999999999987
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+.+.++|+.+++|+|++.+|..||++||.... +...+++.++++.+++.+.+...++.+
T Consensus 1376 ------------~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~--------~~sdeeI~~Al~~a~l~~~I~~lp~Gl 1435 (1560)
T PTZ00243 1376 ------------AYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL--------EASSAEVWAALELVGLRERVASESEGI 1435 (1560)
T ss_pred ------------cCCHHHHHhcceEECCCCccccccHHHHhCccc--------CCCHHHHHHHHHHCCChHHHhhCcccc
Confidence 466778899999999999999999999996321 233467888899999987655445555
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc----------CCCceeecC---------------CccEEEEEc-Ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------NCPYLSFRD---------------DKPVVVVTH-GDLLS 298 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----------DEPt~~L~~---------------g~tvIiiTH-~~~~~ 298 (361)
.+.|++ ....||||||||++||||| ||||+++|. ++|+|+|+| -....
T Consensus 1436 dt~vge------~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1436 DSRVLE------GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA 1509 (1560)
T ss_pred cccccC------CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH
Confidence 554443 3457999999999999998 999999753 899999999 45556
Q ss_pred ccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 299 LTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
.||+|+ ||++|+|++.|++++++..+.
T Consensus 1510 ~~DrIl-VLd~G~VvE~Gt~~eLl~~~~ 1536 (1560)
T PTZ00243 1510 QYDKII-VMDHGAVAEMGSPRELVMNRQ 1536 (1560)
T ss_pred hCCEEE-EEECCEEEEECCHHHHHhCCC
Confidence 799995 699999999999999987644
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=280.09 Aligned_cols=190 Identities=13% Similarity=0.158 Sum_probs=154.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
-|+++|++++|+++. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.
T Consensus 2 ~i~~~nls~~~~~~~-~~~---l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~------~~G~I~i~g~~i~--- 68 (275)
T cd03289 2 QMTVKDLTAKYTEGG-NAV---LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGDIQIDGVSWN--- 68 (275)
T ss_pred eEEEEEEEEEeCCCC-Ccc---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEhh---
Confidence 378999999996432 245 666999999999999999999999999999999996 4799999998774
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+...+.+..++|++|++.+|+.++.+|+.... ....+++.++++.+++.+
T Consensus 69 ------------~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~--------~~~~~~~~~~l~~~gL~~--------- 119 (275)
T cd03289 69 ------------SVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYG--------KWSDEEIWKVAEEVGLKS--------- 119 (275)
T ss_pred ------------hCCHHHHhhhEEEECCCcccchhhHHHHhhhcc--------CCCHHHHHHHHHHcCCHH---------
Confidence 233445567789999999999889999995211 012345667788899977
Q ss_pred EEEEechhhhhhccCC-----------chhhhhhhhhhhhcc---------CCCceeecC---------------CccEE
Q 018083 245 IFVVDGLAVLKSMEGD-----------SDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVV 289 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~-----------LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvI 289 (361)
+.+++|.+ ||||||||++||||| ||||++||. ++|||
T Consensus 120 --------~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii 191 (275)
T cd03289 120 --------VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVI 191 (275)
T ss_pred --------HHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 34666665 999999999999999 999999753 79999
Q ss_pred EEEc-CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 290 VVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 290 iiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+||| ......||||+ +|++|++++.|++++++..+
T Consensus 192 ~isH~~~~i~~~dri~-vl~~G~i~~~g~~~~l~~~~ 227 (275)
T cd03289 192 LSEHRIEAMLECQRFL-VIEENKVRQYDSIQKLLNEK 227 (275)
T ss_pred EEECCHHHHHhCCEEE-EecCCeEeecCCHHHHhhCc
Confidence 9999 23334599996 59999999999999998854
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=284.64 Aligned_cols=253 Identities=19% Similarity=0.219 Sum_probs=180.1
Q ss_pred cccccccCCCCCCCccccCCCCCC-CCccchhhhhhhhhhhHHHHHHHHhHHHHHhhhccccccccceeeecCcceeecc
Q 018083 26 DIPLLRNNSNNNNNNLSMNSGDDE-GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENV 104 (361)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lei~nl~~~Y~~~~~~~~l 104 (361)
|+.+-.+.++....+.+-..||-. ..|.-|+.. .....++|+++|+++.|++. .+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~i~nl~~~~~~~---~i- 60 (305)
T PRK14264 5 DTAGTADASDGTDPEVETTSGESDEQTRDEWTDY--------------------EFDGDAKLSVEDLDVYYGDD---HA- 60 (305)
T ss_pred ccccccccccCCCccccccccchhhhhhhccccc--------------------ccCCCceEEEEEEEEEeCCe---ee-
Confidence 444445555555555566666643 455566422 11234579999999999763 45
Q ss_pred ccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecC
Q 018083 105 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTR 184 (361)
Q Consensus 105 ~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r 184 (361)
|+++||+|++|++++|+||||||||||+++|+|++++..+.|++|+|.++|.++.. ........+
T Consensus 61 --L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~-------------~~~~~~~~~ 125 (305)
T PRK14264 61 --LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ-------------DGVNLVELR 125 (305)
T ss_pred --eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc-------------ccccHHHHh
Confidence 66699999999999999999999999999999998511111589999999987631 001122345
Q ss_pred CCCcccccchHHHHHHHHhccccceeEEe-----------cCC-ChhhhhhhcccccccCCCcceeEEEEEEEEEEechh
Q 018083 185 SLSDDASDNINMIKLWIMEGVRHGELVIR-----------RSD-SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA 252 (361)
Q Consensus 185 ~~i~~v~q~~~l~~~ti~~ni~~~~~~~~-----------~~~-~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~ 252 (361)
..++|++|++.+++.++.+|+.++..... ... ....++++.++++.+++.+.+ ..
T Consensus 126 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------------~~ 192 (305)
T PRK14264 126 KRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV-------------ND 192 (305)
T ss_pred hceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-------------hH
Confidence 56889999987777789999987542110 011 122345677788888875311 01
Q ss_pred hhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--CccccccchhhHh
Q 018083 253 VLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSLTDRARIR 306 (361)
Q Consensus 253 ~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~~aDri~vv 306 (361)
.+++++.+||||||||++||||| |||+++||. +.|||++|| +.+..+||+++++
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 35788999999999999999999 999999753 679999999 5677899997444
Q ss_pred hhhhhhcCCCCccccccCCCCCCC
Q 018083 307 TYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 307 l~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
|++|+++..|++++++..+.+..+
T Consensus 273 l~~G~i~~~g~~~~~~~~~~~~~~ 296 (305)
T PRK14264 273 LTGGELVEYDDTDKIFENPESQRV 296 (305)
T ss_pred ecCCEEEEeCCHHHHHhCcccHHH
Confidence 899999999999888776654433
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=279.52 Aligned_cols=218 Identities=17% Similarity=0.175 Sum_probs=161.0
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+.++....|++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~~---~v---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY---QA---LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEECCe---ee---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 4579999999999753 45 66699999999999999999999999999999998721000179999999976531
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. . ........+..++|++|++.+++.++.+|+.++............++++.++++.+++.+.+
T Consensus 88 ~--------~---~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l----- 151 (265)
T PRK14252 88 L--------S---PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV----- 151 (265)
T ss_pred c--------c---cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh-----
Confidence 0 0 00111233556788899887776788999986542111111122345666777777764211
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 296 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~ 296 (361)
...+++.+.+|||||+||++||||| ||||++||. +.|||++|| +.+
T Consensus 152 --------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~ 223 (265)
T PRK14252 152 --------KDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQA 223 (265)
T ss_pred --------hHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHH
Confidence 0134788999999999999999999 999999753 689999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
..+|||++ +|++|++++.|++++++..+.++++.
T Consensus 224 ~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~ 257 (265)
T PRK14252 224 ARVSDYTA-YMYMGELIEFGATDTIFIKPKNKQTE 257 (265)
T ss_pred HHhCCEEE-EEECCEEEEeCCHHHHHhCCCCHHHH
Confidence 78999996 59999999999999988776655543
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=272.00 Aligned_cols=193 Identities=16% Similarity=0.243 Sum_probs=146.1
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++.. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~-~~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~---- 67 (234)
T cd03251 1 VEFKNVTFRYPGDG-PPV---LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-----VDSGRILIDGHDVR---- 67 (234)
T ss_pred CEEEEEEEEeCCCC-ccc---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-----CCCCEEEECCEEhh----
Confidence 57899999997532 135 666999999999999999999999999999999999 99999999997653
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhh-----hhccccccc--CCCccee
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN-----RMRCKAHKI--GCEPSVI 238 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gl~~~~~ 238 (361)
.......+..+++++|++.+++.++.+|+.+.... .......+ .+.++++.+ ++..
T Consensus 68 -----------~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~--- 130 (234)
T cd03251 68 -----------DYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPG---ATREEVEEAARAANAHEFIMELPEGYDT--- 130 (234)
T ss_pred -----------hCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCC---CCHHHHHHHHHHcCcHHHHHhcccCcce---
Confidence 11112234567888999887777999999875431 11111111 122233333 4443
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH- 293 (361)
.+++++.+||+|||||++||||| ||||++||. +.|||++||
T Consensus 131 --------------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~ 196 (234)
T cd03251 131 --------------VIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHR 196 (234)
T ss_pred --------------eeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 23678899999999999999999 999999753 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
.++. .||+++ +|++|+++..+++++++..
T Consensus 197 ~~~~~-~~d~v~-~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 197 LSTIE-NADRIV-VLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred HHHHh-hCCEEE-EecCCeEeeeCCHHHHHHc
Confidence 4554 499996 5999999999988777654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=268.80 Aligned_cols=193 Identities=17% Similarity=0.213 Sum_probs=141.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++.. ..+ |+++||+|++|++++|+||||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~-~~~---l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~---- 69 (220)
T cd03245 3 IEFRNVSFSYPNQE-IPA---LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-----PTSGSVLLDGTDIR---- 69 (220)
T ss_pred EEEEEEEEEcCCCC-ccc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCeEEECCEEhH----
Confidence 78999999996532 245 666999999999999999999999999999999999 99999999997753
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.......+..+++++|++.+++.++.+|+.+.... ...+.+.++++.+++.+.....++.+-
T Consensus 70 -----------~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~~~ 131 (220)
T cd03245 70 -----------QLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL-------ADDERILRAAELAGVTDFVNKHPNGLD 131 (220)
T ss_pred -----------HCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCC-------CCHHHHHHHHHHcCcHHHHHhcccccc
Confidence 11111234467888999877767899998764321 112345566777777652200000000
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Ccccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSLT 300 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~~~a 300 (361)
. .....+.+||||||||++||||| ||||++||. ++|||++|| .....+|
T Consensus 132 ~------~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 205 (220)
T cd03245 132 L------QIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLV 205 (220)
T ss_pred c------eecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhC
Confidence 0 00123469999999999999999 999999753 579999999 2334799
Q ss_pred chhhHhhhhhhhcCCC
Q 018083 301 DRARIRTYLGELLGIP 316 (361)
Q Consensus 301 Dri~vvl~~G~iv~~g 316 (361)
|+++ +|++|++++.|
T Consensus 206 d~v~-~l~~g~i~~~~ 220 (220)
T cd03245 206 DRII-VMDSGRIVADG 220 (220)
T ss_pred CEEE-EEeCCeEeecC
Confidence 9996 59999987643
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=279.63 Aligned_cols=195 Identities=12% Similarity=0.049 Sum_probs=152.3
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc--------cceeeec
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--------RAQVTYN 156 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~--------~G~I~i~ 156 (361)
||+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |+ +|+|.++
T Consensus 1 ml~~~nl~~~~~~~---~i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-----p~~~~~~~~~~G~i~~~ 69 (272)
T PRK13547 1 MLTADHLHVARRHR---AI---LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-----GGGAPRGARVTGDVTLN 69 (272)
T ss_pred CeEEEEEEEEECCE---eE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CcccccccCCceEEEEC
Confidence 48899999999653 45 666999999999999999999999999999999998 87 8999999
Q ss_pred ccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHH-HHHHHHhccccceeEEe---cCCChhhhhhhcccccccC
Q 018083 157 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINM-IKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 157 G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l-~~~ti~~ni~~~~~~~~---~~~~~~~~~~v~~~l~~~g 232 (361)
|.++. .......+..+++++|++.+ +..++.+|+.++..... ........+.+.++++.++
T Consensus 70 g~~~~---------------~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (272)
T PRK13547 70 GEPLA---------------AIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG 134 (272)
T ss_pred CEEcc---------------cCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcC
Confidence 98764 11112223446788888653 34488899877532110 1111233456778899999
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------------CCCceeecC----------
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------------NCPYLSFRD---------- 284 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------------DEPt~~L~~---------- 284 (361)
+.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 135 l~~-----------------~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l 197 (272)
T PRK13547 135 ATA-----------------LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTV 197 (272)
T ss_pred cHh-----------------hhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 987 45889999999999999999886 799999642
Q ss_pred -------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 285 -------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 285 -------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
++|||++|| +++..+||+++ +|++|++++.|++++++.
T Consensus 198 ~~~~~~~~~tviiisH~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 198 RRLARDWNLGVLAIVHDPNLAARHADRIA-MLADGAIVAHGAPADVLT 244 (272)
T ss_pred HHHHHhcCCEEEEEECCHHHHHHhCCEEE-EEECCeEEEecCHHHHcC
Confidence 789999999 46678999996 599999999998877754
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=270.67 Aligned_cols=201 Identities=13% Similarity=0.164 Sum_probs=144.3
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|+++.|++....++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 l~i~~l~~~~~~~~~~~~---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~---- 68 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPI---LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD-----PTSGEILLDGVDIR---- 68 (238)
T ss_pred CeEEEEEEecCCCCCccc---eeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC-----CCCCEEEECCEehh----
Confidence 468999999965321245 566999999999999999999999999999999999 99999999997753
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.......+..++|++|++.++..++.+|+.++... .. .+.+.+.++..++.+.......
T Consensus 69 -----------~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~---~~----~~~~~~~~~~~~~~~~~~~l~~--- 127 (238)
T cd03249 69 -----------DLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPD---AT----DEEVEEAAKKANIHDFIMSLPD--- 127 (238)
T ss_pred -----------hcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCC---CC----HHHHHHHHHHcChHHHHHhhcc---
Confidence 11112234458889999888777999999875431 01 1112222222222110000000
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec---------------CCccEEEEEc--Cccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR---------------DDKPVVVVTH--GDLLSL 299 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~---------------~g~tvIiiTH--~~~~~~ 299 (361)
+-...+++.+.+||||||||++||||| |||+++|| .|+|||++|| +++. +
T Consensus 128 ---~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~ 203 (238)
T cd03249 128 ---GYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-N 203 (238)
T ss_pred ---ccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-h
Confidence 000023677899999999999999999 99999976 2789999999 4554 8
Q ss_pred cchhhHhhhhhhhcCCCCccccccC
Q 018083 300 TDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
||+++ +|++|+++..++.+++...
T Consensus 204 ~d~v~-~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 204 ADLIA-VLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred CCEEE-EEECCEEEEeCCHHHHhhc
Confidence 99996 5999999998887766543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=276.04 Aligned_cols=192 Identities=15% Similarity=0.224 Sum_probs=147.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 6 ~l~~~~l~~~~~~~~--~i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~-- 73 (272)
T PRK15056 6 GIVVNDVTVTWRNGH--TA---LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKISILGQPTRQ-- 73 (272)
T ss_pred eEEEEeEEEEecCCc--EE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEhHH--
Confidence 689999999996432 35 667999999999999999999999999999999999 999999999977530
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHH---HHHHHHhccccceeEE-e--cCCChhhhhhhcccccccCCCccee
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINM---IKLWIMEGVRHGELVI-R--RSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l---~~~ti~~ni~~~~~~~-~--~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
. ..+..++|++|++.+ +..++.+++.++.... . .......++++.++++.+++.+
T Consensus 74 -------------~---~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--- 134 (272)
T PRK15056 74 -------------A---LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE--- 134 (272)
T ss_pred -------------h---hccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh---
Confidence 0 011236677777543 1224566665432110 0 0112233456777889999987
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH 293 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 135 --------------~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH 200 (272)
T PRK15056 135 --------------FRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200 (272)
T ss_pred --------------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 45889999999999999999999 999999753 789999999
Q ss_pred --CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+.+..+||++ +++ +|+++..|++++++.
T Consensus 201 ~~~~~~~~~d~v-~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 201 NLGSVTEFCDYT-VMV-KGTVLASGPTETTFT 230 (272)
T ss_pred CHHHHHHhCCEE-EEE-CCEEEeecCHHhccC
Confidence 4677999999 435 899999999888764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=277.28 Aligned_cols=211 Identities=19% Similarity=0.184 Sum_probs=161.1
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..+.+.+++++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|++++....|++|+|.++|.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 5 APIVMDCKLDKIFYGNF---MA---VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred CCceEEEEeEEEEeCCE---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence 34568999999999753 45 6669999999999999999999999999999999981100027999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..+++++|++.++..++.+|+.++..... ......+++.++++.+++.+.+.
T Consensus 79 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~--- 140 (261)
T PRK14263 79 GK-------------GVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNR--YKGDLGDRVKHALQGAALWDEVK--- 140 (261)
T ss_pred cc-------------ccchHhhhhceEEEecCCccccccHHHHHHHHHhhcC--chHHHHHHHHHHHHHcCCchhhh---
Confidence 10 0111123456888999988776689999987643221 11234467788889998864220
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...++++.+|||||+||++||||| ||||++||. +.|||++|| +.
T Consensus 141 ----------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~ 210 (261)
T PRK14263 141 ----------DKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQ 210 (261)
T ss_pred ----------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 023678889999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhh--------hhhhcCCCCccccccCCCC
Q 018083 296 LLSLTDRARIRTY--------LGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 296 ~~~~aDri~vvl~--------~G~iv~~g~~~~i~~~~~~ 327 (361)
+..+|||++ +|+ +|++++.|++++++..+.+
T Consensus 211 i~~~~d~v~-~l~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 249 (261)
T PRK14263 211 AIRVADTTA-FFSVDISQGTRTGYLVEMGPTAQIFQNPRE 249 (261)
T ss_pred HHHhCCEEE-EEecccccccCCceEEEeCCHHHHHhCCCc
Confidence 779999996 585 8999999999998876654
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=265.83 Aligned_cols=187 Identities=12% Similarity=0.162 Sum_probs=144.2
Q ss_pred hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 81 RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 81 ~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
...++|+++|++++|++.....+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~ 78 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLV---LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ-----PQGGQVLLDGKPI 78 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCcc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCCch
Confidence 35678999999999975311245 566999999999999999999999999999999999 9999999999876
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChh-----hhhhhccccccc--CC
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS-----LRNRMRCKAHKI--GC 233 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~-----~~~~v~~~l~~~--gl 233 (361)
. .......+..+++++|++.+++.++.+|+.++.... .... .+..+.++++.+ |+
T Consensus 79 ~---------------~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl 140 (226)
T cd03248 79 S---------------QYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGY 140 (226)
T ss_pred H---------------HcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccc
Confidence 4 111122345678899999888789999998754311 1111 111234556666 66
Q ss_pred CcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEE
Q 018083 234 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVV 289 (361)
Q Consensus 234 ~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvI 289 (361)
.+ .+++++.+||||||||++||||| ||||++||. +.|+|
T Consensus 141 ~~-----------------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii 203 (226)
T cd03248 141 DT-----------------EVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVL 203 (226)
T ss_pred cc-----------------hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 65 34788999999999999999999 999999753 68999
Q ss_pred EEEc--CccccccchhhHhhhhhhh
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGEL 312 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~i 312 (361)
++|| .++ ..||+++ +|++|++
T Consensus 204 ~~sh~~~~~-~~~d~i~-~l~~g~i 226 (226)
T cd03248 204 VIAHRLSTV-ERADQIL-VLDGGRI 226 (226)
T ss_pred EEECCHHHH-HhCCEEE-EecCCcC
Confidence 9999 455 4599996 5998864
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=268.51 Aligned_cols=191 Identities=17% Similarity=0.204 Sum_probs=148.7
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.|+++|+++.|+++. ...+ |+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~~~~~i---l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~- 71 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQV---LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS-----VQEGSLKVLGQELYG- 71 (220)
T ss_pred CEEEEEEEEEccCCCcceeE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEhHh-
Confidence 378999999997531 1245 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. .......+..+++++|++.+++. ++.+|+.++.............+.+.++++.+++.+
T Consensus 72 -------~~----~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------- 133 (220)
T TIGR02982 72 -------AS----EKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGD------- 133 (220)
T ss_pred -------cC----HhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChh-------
Confidence 00 00011234568889999988875 888998865432111223344567888999999977
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-~~ 295 (361)
..++++.+||+|||||++||||| |||+++||. ++|||++|| ..
T Consensus 134 ----------~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 134 ----------HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred ----------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45889999999999999999999 999999642 799999999 34
Q ss_pred cccccchhhHhhhhhhhc
Q 018083 296 LLSLTDRARIRTYLGELL 313 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv 313 (361)
...+||+++ +|++|+++
T Consensus 204 ~~~~~d~v~-~l~~g~~~ 220 (220)
T TIGR02982 204 ILDVADRIV-HMEDGKLL 220 (220)
T ss_pred HHhhCCEEE-EEECCEEC
Confidence 568999996 59998753
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=268.60 Aligned_cols=198 Identities=12% Similarity=0.195 Sum_probs=143.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|++++|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~--~~---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~v~~~g~~~~---- 66 (236)
T cd03253 1 IEFENVTFAYDPGR--PV---LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-----VSSGSILIDGQDIR---- 66 (236)
T ss_pred CEEEEEEEEeCCCC--ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEEhh----
Confidence 46899999996432 35 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.......+..++|++|++.+++.++.+|+.++... .... .+..+++.+++.+.+.....
T Consensus 67 -----------~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~---~~~~----~~~~~~~~~~l~~~~~~l~~--- 125 (236)
T cd03253 67 -----------EVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPD---ATDE----EVIEAAKAAQIHDKIMRFPD--- 125 (236)
T ss_pred -----------hCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCC---CCHH----HHHHHHHHcCcHHHHHhccc---
Confidence 11122234557889999888877999999875431 1111 12222222222210000000
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 299 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~~ 299 (361)
.-...+++.+.+||||||||++||||| |||+++||. ++|||++|| +.+ ..
T Consensus 126 ---~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~-~~ 201 (236)
T cd03253 126 ---GYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTI-VN 201 (236)
T ss_pred ---cccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-Hh
Confidence 000023667889999999999999999 999999753 789999999 344 45
Q ss_pred cchhhHhhhhhhhcCCCCcccccc
Q 018083 300 TDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
||+++ +|++|+++..|+.+++..
T Consensus 202 ~d~~~-~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 202 ADKII-VLKDGRIVERGTHEELLA 224 (236)
T ss_pred CCEEE-EEECCEEEeeCCHHHHhh
Confidence 99996 599999999888776654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=287.70 Aligned_cols=192 Identities=14% Similarity=0.198 Sum_probs=164.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++.+++++++|.|++ +.|.++ |||+|++||++||+|+||||||||+++|.|+|+ |++|+|+++|+.+..
T Consensus 2 ~~~l~~~~itK~f~~---~~And~---V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-----P~~GeI~v~G~~v~~ 70 (501)
T COG3845 2 EPALEMRGITKRFPG---VVANDD---VSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-----PDSGEIRVDGKEVRI 70 (501)
T ss_pred CceEEEeccEEEcCC---EEecCc---eeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-----CCcceEEECCEEecc
Confidence 457899999999984 578555 999999999999999999999999999999999 999999999998752
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeE--EecCCChhhhhhhcccccccCCCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
. -.....+..|++|+|++.+++. |+.+||.++... ....+....++++.++.++.||+=+.
T Consensus 71 ~--------------sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp-- 134 (501)
T COG3845 71 K--------------SPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP-- 134 (501)
T ss_pred C--------------CHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCc--
Confidence 1 1122345569999999999988 999999998863 23456677889999999999997532
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec----------------CCccEEEEEc-
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~----------------~g~tvIiiTH- 293 (361)
+.+..+||-|+||||.|-+|| ||||+-|. .|+|||+|||
T Consensus 135 ---------------~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHK 199 (501)
T COG3845 135 ---------------DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHK 199 (501)
T ss_pred ---------------cceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 889999999999999999999 99999863 3999999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~ 317 (361)
+++.++|||+.| |..|+++...+
T Consensus 200 L~Ev~~iaDrvTV-LR~Gkvvgt~~ 223 (501)
T COG3845 200 LKEVMAIADRVTV-LRRGKVVGTVD 223 (501)
T ss_pred HHHHHHhhCeeEE-EeCCeEEeeec
Confidence 899999999975 99999877654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=296.30 Aligned_cols=190 Identities=14% Similarity=0.202 Sum_probs=152.8
Q ss_pred cccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeE
Q 018083 88 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 167 (361)
Q Consensus 88 i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 167 (361)
++|++++|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~~nl~~~~~~~---~i---l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~----- 64 (491)
T PRK10982 1 MSNISKSFPGV---KA---LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-----KDSGSILFQGKEIDF----- 64 (491)
T ss_pred CCceEEEeCCE---Ee---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCEECCC-----
Confidence 47899999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eeeecCCCcceee-eecCCCCcccccchHHHHH-HHHhccccceeEEec--CCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 168 EYTIPRGSNSFSL-YDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 168 ~~~i~~~~~~~~~-~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~--~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
... ...+..+++++|++.+++. ++.+|+.++...... .+.....+++.++++.+++..
T Consensus 65 ----------~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 126 (491)
T PRK10982 65 ----------KSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-------- 126 (491)
T ss_pred ----------CCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC--------
Confidence 000 1123457889998876665 899999876421111 122334457788899999976
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +++
T Consensus 127 ---------~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~ 197 (491)
T PRK10982 127 ---------DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEI 197 (491)
T ss_pred ---------CccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 34888999999999999999999 999999763 789999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCcccc
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
..+||+++ +|++|+++..++++++
T Consensus 198 ~~~~d~i~-~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 198 FQLCDEIT-ILRDGQWIATQPLAGL 221 (491)
T ss_pred HHhCCEEE-EEECCEEEeecChhhC
Confidence 78999996 5999999999988765
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-34 Score=296.85 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=154.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~~---~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~~ 70 (501)
T PRK11288 2 SPYLSFDGIGKTFPGV---KA---LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-----PDAGSILIDGQEMRF 70 (501)
T ss_pred CceEEEeeeEEEECCE---EE---EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCC
Confidence 3589999999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEE--ecCCChhhhhhhcccccccCCCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~--~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
. . .....+..++|++|++.+++. ++.+|+.++.... ...+....++++.++++.+++.+
T Consensus 71 ~-------------~-~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 132 (501)
T PRK11288 71 A-------------S-TTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI---- 132 (501)
T ss_pred C-------------C-HHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC----
Confidence 0 0 001124568899999887776 8999998764311 11122344567888999999976
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH- 293 (361)
..++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 133 -------------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd 199 (501)
T PRK11288 133 -------------DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHR 199 (501)
T ss_pred -------------CcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 34889999999999999999999 999999753 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCc
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
+.+..+|||++ +|++|+++..++.
T Consensus 200 ~~~~~~~~d~i~-~l~~G~i~~~~~~ 224 (501)
T PRK11288 200 MEEIFALCDAIT-VFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCEEE-EEECCEEEeecCc
Confidence 56778999996 5999999876543
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-34 Score=267.29 Aligned_cols=181 Identities=14% Similarity=0.150 Sum_probs=145.8
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|+.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~l~~v~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~~~~~--- 66 (223)
T TIGR03740 1 LETKNLSKRFGKQ---TA---VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-----PTSGEIIFDGHPWTR--- 66 (223)
T ss_pred CEEEeEEEEECCE---EE---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccc---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999976530
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. . +..+++++|++.+++. ++.+|+.+..... . ...+++.++++.+++.+
T Consensus 67 ------------~---~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~-~----~~~~~~~~~l~~~~l~~--------- 116 (223)
T TIGR03740 67 ------------K---D-LHKIGSLIESPPLYENLTARENLKVHTTLL-G----LPDSRIDEVLNIVDLTN--------- 116 (223)
T ss_pred ------------c---c-cccEEEEcCCCCccccCCHHHHHHHHHHHc-C----CCHHHHHHHHHHcCCcH---------
Confidence 0 0 1246677777766664 7888886543211 1 11346777889999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
.+++.+.+|||||+||++||||| |||+++||. +.|||++|| +++.
T Consensus 117 --------~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 117 --------TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred --------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 45889999999999999999999 999999753 789999999 4667
Q ss_pred cccchhhHhhhhhhhcCCCCcc
Q 018083 298 SLTDRARIRTYLGELLGIPPAK 319 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~ 319 (361)
.+|||++ +|++|+++..|++.
T Consensus 189 ~~~d~i~-~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 189 QLADHIG-IISEGVLGYQGKIN 209 (223)
T ss_pred HhcCEEE-EEeCCEEEEecChh
Confidence 8999996 59999999888764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-34 Score=295.12 Aligned_cols=187 Identities=13% Similarity=0.118 Sum_probs=147.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-----p~~G~i~~~~~~~~~-- 69 (490)
T PRK10938 3 SLQISQGTFRLSDT---KT---LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP-----LLSGERQSQFSHITR-- 69 (490)
T ss_pred eEEEEeEEEEcCCe---ee---cccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCceEEECCccccc--
Confidence 69999999999753 45 666999999999999999999999999999999999 999999998866530
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHH--H-------HHHHHhccccceeEEecCCChhhhhhhcccccccCCCc
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINM--I-------KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 235 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l--~-------~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~ 235 (361)
....+.+..+++++|++.. + ..++.+++.++ ...++++.++++.+++.+
T Consensus 70 -------------~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~ 127 (490)
T PRK10938 70 -------------LSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITA 127 (490)
T ss_pred -------------CCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHh
Confidence 1111123346677776432 1 12455554321 123456788899999987
Q ss_pred ceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEE
Q 018083 236 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 290 (361)
Q Consensus 236 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIi 290 (361)
++++++.+||||||||++||||| ||||++||. |+|||+
T Consensus 128 -----------------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii 190 (490)
T PRK10938 128 -----------------LLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVL 190 (490)
T ss_pred -----------------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 45899999999999999999999 999999763 789999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+|| +.+..+||+++ +|++|+++..|++++++..
T Consensus 191 ~tH~~~~~~~~~d~v~-~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 191 VLNRFDEIPDFVQFAG-VLADCTLAETGEREEILQQ 225 (490)
T ss_pred EeCCHHHHHhhCCEEE-EEECCEEEEeCCHHHHhcc
Confidence 999 57789999996 5999999999988777653
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-34 Score=327.91 Aligned_cols=220 Identities=11% Similarity=0.086 Sum_probs=163.6
Q ss_pred hhhhhHHHHHHHHhHHHHHhh-------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 61 QRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~-------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
.+.+..|+.++++..++.... ....|+++||+++|++....++ |+++||+|++|+++||+||||||||||
T Consensus 351 a~~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v---L~~isl~i~~Ge~vaIvG~SGsGKSTL 427 (1466)
T PTZ00265 351 SLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEI---YKDLNFTLTEGKTYAFVGESGCGKSTI 427 (1466)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCce---eccceEEEcCCCEEEEECCCCCCHHHH
Confidence 344455999998765543211 1125899999999975422346 555999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeec-ccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEE
Q 018083 134 VNRISKVFENDKFASERAQVTYN-SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 212 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~-G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~ 212 (361)
+++|+|+++ |++|+|+++ |.++. .+....+|..+++|+|++.+|+.++.+||.++....
T Consensus 428 l~lL~gl~~-----p~~G~I~i~~g~~i~---------------~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~ 487 (1466)
T PTZ00265 428 LKLIERLYD-----PTEGDIIINDSHNLK---------------DINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSL 487 (1466)
T ss_pred HHHHHHhcc-----CCCCeEEEeCCcchh---------------hCCHHHHHHhccEecccccchhccHHHHHHhcCCCc
Confidence 999999999 999999994 67664 234445678899999999999999999999874210
Q ss_pred ec--------------------------------------------------CCChhhhhhhcccccccCCCcceeEEEE
Q 018083 213 RR--------------------------------------------------SDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 213 ~~--------------------------------------------------~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. .......+++.++++.+++++.+.+.++
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~ 567 (1466)
T PTZ00265 488 KDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPD 567 (1466)
T ss_pred cccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCcc
Confidence 00 0001223567778888888764433334
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-~~ 295 (361)
.+.+.| .+.+.+||||||||++||||| ||||++||. |+|+|+||| ..
T Consensus 568 g~dT~v------g~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls 641 (1466)
T PTZ00265 568 KYETLV------GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS 641 (1466)
T ss_pred ccCcee------CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 444433 445778999999999999999 999999652 689999999 33
Q ss_pred cccccchhhHhhhhh
Q 018083 296 LLSLTDRARIRTYLG 310 (361)
Q Consensus 296 ~~~~aDri~vvl~~G 310 (361)
..+.||+|+ +|++|
T Consensus 642 ~i~~aD~Ii-vl~~g 655 (1466)
T PTZ00265 642 TIRYANTIF-VLSNR 655 (1466)
T ss_pred HHHhCCEEE-EEeCC
Confidence 447899995 59886
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-34 Score=266.06 Aligned_cols=184 Identities=16% Similarity=0.154 Sum_probs=143.9
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
+.+ +|+++|++. .+ + +||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 ~~~-~l~~~~~~~---~~--~---vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~- 65 (214)
T cd03297 2 LCV-DIEKRLPDF---TL--K---IDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-----PDGGTIVLNGTVLFDSR- 65 (214)
T ss_pred cee-eeeEecCCe---ee--C---ceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEeccccc-
Confidence 445 899999763 22 5 9999999 9999999999999999999999999 99999999997763100
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. .......+..+++++|++.+++. ++.+|+.++.... .....++++.++++.+++.+
T Consensus 66 -~---------~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~--------- 123 (214)
T cd03297 66 -K---------KINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDH--------- 123 (214)
T ss_pred -c---------hhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHh---------
Confidence 0 00111234567888999877765 8889987653211 12234456788899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +++
T Consensus 124 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 195 (214)
T cd03297 124 --------LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA 195 (214)
T ss_pred --------HhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH
Confidence 45889999999999999999999 999999652 789999999 467
Q ss_pred ccccchhhHhhhhhhhcCCC
Q 018083 297 LSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g 316 (361)
..+||+++ +|++|++++.|
T Consensus 196 ~~~~d~i~-~l~~G~i~~~g 214 (214)
T cd03297 196 EYLADRIV-VMEDGRLQYIG 214 (214)
T ss_pred HHhcCEEE-EEECCEEEecC
Confidence 78999996 59999987654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-34 Score=268.08 Aligned_cols=172 Identities=17% Similarity=0.165 Sum_probs=138.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.. ... .
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~---------------~~~-----~ 55 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-----PTSGGVILEGKQITE---------------PGP-----D 55 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC---------------CCh-----h
Confidence 355999999999999999999999999999999999 999999999987641 000 1
Q ss_pred CcccccchHHHHH-HHHhccccceeE-EecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhh
Q 018083 187 SDDASDNINMIKL-WIMEGVRHGELV-IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 264 (361)
Q Consensus 187 i~~v~q~~~l~~~-ti~~ni~~~~~~-~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGG 264 (361)
.++++|++.+++. ++.+|+.++... ....+....++++.++++.+++.+ .+++++.+||||
T Consensus 56 ~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgG 118 (230)
T TIGR01184 56 RMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTE-----------------AADKRPGQLSGG 118 (230)
T ss_pred heEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHH-----------------HHcCChhhCCHH
Confidence 2567888777664 888888765321 111222344556788899999986 458899999999
Q ss_pred hhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--CccccccchhhHhhhhhhhcCCC
Q 018083 265 KQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 265 qrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g 316 (361)
||||++||||| ||||++||. ++|||++|| +++..+||+++ +|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~-~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVV-MLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE-EEeCCcEeccc
Confidence 99999999999 999999653 789999999 56778999996 59999999999
Q ss_pred Ccccc
Q 018083 317 PAKQI 321 (361)
Q Consensus 317 ~~~~i 321 (361)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 87666
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-33 Score=294.47 Aligned_cols=187 Identities=11% Similarity=0.108 Sum_probs=149.4
Q ss_pred ccccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.|+++|++++|++.. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~---l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----p~~G~i~~~g~~i~- 407 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFA---LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI-----PQEGEILLDGAAVS- 407 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCce---eccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECC-
Confidence 589999999997531 1135 566999999999999999999999999999999999 99999999998876
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.+...+.+..+++|+|++.+|..++.+|.. +...++++.++++.+++.+.+...++
T Consensus 408 --------------~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~----------~~~~~~~~~~~~~~~~l~~~~~~lp~ 463 (555)
T TIGR01194 408 --------------ADSRDDYRDLFSAIFADFHLFDDLIGPDEG----------EHASLDNAQQYLQRLEIADKVKIEDG 463 (555)
T ss_pred --------------CCCHHHHHhhCcEEccChhhhhhhhhcccc----------cchhHHHHHHHHHHcCCchhhccccc
Confidence 344455677899999999999999888742 12345667788999999874422111
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-~~ 295 (361)
.+ .....||||||||++||||| ||||++||. ++|+|+||| ..
T Consensus 464 g~-----------~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~ 532 (555)
T TIGR01194 464 GF-----------STTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ 532 (555)
T ss_pred cc-----------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 11 11257999999999999998 999999642 799999999 45
Q ss_pred cccccchhhHhhhhhhhcCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g 316 (361)
....||+|+ +|++|++++.-
T Consensus 533 ~~~~~d~i~-~l~~G~i~~~~ 552 (555)
T TIGR01194 533 YFELADQII-KLAAGCIVKDT 552 (555)
T ss_pred HHHhCCEEE-EEECCEEEEec
Confidence 567899995 69999998653
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-33 Score=293.99 Aligned_cols=180 Identities=12% Similarity=0.136 Sum_probs=145.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.++++|++|+|+++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 322 ~i~~~~v~f~y~~~~--~~---l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~--- 388 (547)
T PRK10522 322 TLELRNVTFAYQDNG--FS---VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVT--- 388 (547)
T ss_pred eEEEEEEEEEeCCCC--eE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECC---
Confidence 589999999997543 35 666999999999999999999999999999999999 99999999998875
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+...+.+..+++|+|++.+|..++.+| . .....+++.++++.+++.....
T Consensus 389 ------------~~~~~~~~~~i~~v~q~~~lf~~ti~~n-~----------~~~~~~~~~~~~~~~~l~~~~~------ 439 (547)
T PRK10522 389 ------------AEQPEDYRKLFSAVFTDFHLFDQLLGPE-G----------KPANPALVEKWLERLKMAHKLE------ 439 (547)
T ss_pred ------------CCCHHHHhhheEEEecChhHHHHhhccc-c----------CchHHHHHHHHHHHcCCchhhh------
Confidence 3344456778999999999999998776 1 1223455667788888876320
Q ss_pred EEEEechhhhhh--ccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-Cc
Q 018083 245 IFVVDGLAVLKS--MEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 295 (361)
Q Consensus 245 ~~vv~~~~~~~~--~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-~~ 295 (361)
..+. ....||||||||++||||+ ||||++||. ++|+|+||| ..
T Consensus 440 --------~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~ 511 (547)
T PRK10522 440 --------LEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH 511 (547)
T ss_pred --------ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH
Confidence 0011 1458999999999999998 999999642 689999999 55
Q ss_pred cccccchhhHhhhhhhhcCC
Q 018083 296 LLSLTDRARIRTYLGELLGI 315 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~ 315 (361)
..+.||+|+ +|++|++++.
T Consensus 512 ~~~~~d~i~-~l~~G~i~e~ 530 (547)
T PRK10522 512 YFIHADRLL-EMRNGQLSEL 530 (547)
T ss_pred HHHhCCEEE-EEECCEEEEe
Confidence 667899995 6999999876
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-34 Score=293.86 Aligned_cols=194 Identities=15% Similarity=0.180 Sum_probs=153.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc--ccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p--~~G~I~i~G~~i~~ 162 (361)
+|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|+++..
T Consensus 1 ~l~i~~l~~~~~~~---~i---l~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~-----~~~~~G~i~~~g~~~~~ 69 (500)
T TIGR02633 1 LLEMKGIVKTFGGV---KA---LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-----HGTWDGEIYWSGSPLKA 69 (500)
T ss_pred CEEEEeEEEEeCCe---Ee---ecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCeEEEECCEECCC
Confidence 47899999999752 46 566999999999999999999999999999999998 6 79999999987641
Q ss_pred ceEeEeeeecCCCcceeee-ecCCCCcccccchHHHHH-HHHhccccceeEEe---cCCChhhhhhhcccccccCCCcce
Q 018083 163 TYFLQEYTIPRGSNSFSLY-DTRSLSDDASDNINMIKL-WIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~-d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~---~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
.... ..+..++|++|++.+++. ++.+|+.++..... ....+...+++.++++.+++.+..
T Consensus 70 ---------------~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 134 (500)
T TIGR02633 70 ---------------SNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN 134 (500)
T ss_pred ---------------CCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc
Confidence 1111 123457889999877665 88899987643210 112233456778889999997621
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 292 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiT 292 (361)
.++++.+||||||||++||||| ||||++||. |+|||+||
T Consensus 135 ----------------~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiit 198 (500)
T TIGR02633 135 ----------------VTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYIS 198 (500)
T ss_pred ----------------ccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 2567899999999999999999 999999763 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
| +.+..+||+++ +|++|+++..++++++
T Consensus 199 Hd~~~~~~~~d~i~-~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 199 HKLNEVKAVCDTIC-VIRDGQHVATKDMSTM 228 (500)
T ss_pred CcHHHHHHhCCEEE-EEeCCeEeeecCcccC
Confidence 9 57778999996 5999999998877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-34 Score=264.45 Aligned_cols=190 Identities=12% Similarity=0.189 Sum_probs=166.2
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
++++++|+++|++. .|+++ +||++++|++++++|||||||||++|+|.|++. |++|.|.++|.++.
T Consensus 2 ~L~ie~vtK~Fg~k---~av~~---isf~v~~G~i~GllG~NGAGKTTtfRmILglle-----~~~G~I~~~g~~~~--- 67 (300)
T COG4152 2 ALEIEGVTKSFGDK---KAVDN---ISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-----PTEGEITWNGGPLS--- 67 (300)
T ss_pred ceEEecchhccCce---eeecc---eeeeecCCeEEEeecCCCCCccchHHHHhccCC-----ccCceEEEcCcchh---
Confidence 58999999999874 67555 999999999999999999999999999999999 99999999998875
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
+.....|||.|+.--+++. ++.+.+.|-.. ..++++.+.++++..||+++++...
T Consensus 68 ----------------~~~~~rIGyLPEERGLy~k~tv~dql~yla~-LkGm~~~e~~~~~~~wLer~~i~~~------- 123 (300)
T COG4152 68 ----------------QEIKNRIGYLPEERGLYPKMTVEDQLKYLAE-LKGMPKAEIQKKLQAWLERLEIVGK------- 123 (300)
T ss_pred ----------------hhhhhhcccChhhhccCccCcHHHHHHHHHH-hcCCcHHHHHHHHHHHHHhcccccc-------
Confidence 1233468888888888777 88888877443 2356788999999999999999874
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
..+++.+||.|++|++.+..|+ |||+||||+ |.|||++|| ..+
T Consensus 124 ----------~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~v 193 (300)
T COG4152 124 ----------KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHV 193 (300)
T ss_pred ----------ccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHH
Confidence 4889999999999999999987 999999875 999999999 789
Q ss_pred ccccchhhHhhhhhhhcCCCCcccccc
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
.++||++++ |++|+.|-.|+.+++-.
T Consensus 194 EeLCD~llm-L~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 194 EELCDRLLM-LKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HHHhhhhhe-ecCCceEEeccHHHHHH
Confidence 999999965 99999999999987755
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-34 Score=267.93 Aligned_cols=195 Identities=15% Similarity=0.091 Sum_probs=143.5
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhh--hcccccccccceeeeccccc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl--~~~~~~~p~~G~I~i~G~~i 160 (361)
.++|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+ ++ |++|+|.++|.++
T Consensus 5 ~~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~-----~~~G~i~~~g~~~ 73 (252)
T CHL00131 5 KPILEIKNLHASVNEN---EI---LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK-----ILEGDILFKGESI 73 (252)
T ss_pred CceEEEEeEEEEeCCE---Ee---eecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc-----CCCceEEECCEEc
Confidence 4579999999999753 45 6669999999999999999999999999999998 56 8999999999876
Q ss_pred CcceEeEeeeecCCCcceeeeecCC-CCcccccchHHHHH-HHHhccccceeEEe---c---CCChhhhhhhcccccccC
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRS-LSDDASDNINMIKL-WIMEGVRHGELVIR---R---SDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~-~i~~v~q~~~l~~~-ti~~ni~~~~~~~~---~---~~~~~~~~~v~~~l~~~g 232 (361)
.. ......+. .+++++|++.+++. ++.+++.+...... . ....+..+++.++++.++
T Consensus 74 ~~---------------~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (252)
T CHL00131 74 LD---------------LEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVG 138 (252)
T ss_pred cc---------------CChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcC
Confidence 41 11111111 24556777655544 55566544321000 0 011123456677889999
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccC-Cchhhhhhhhhhhhcc---------CCCceeecC----------------Cc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DK 286 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~ 286 (361)
+.+. .+++.+. +|||||+||++||||| ||||++||. +.
T Consensus 139 l~~~----------------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~ 202 (252)
T CHL00131 139 MDPS----------------FLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSEN 202 (252)
T ss_pred Cchh----------------hhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 9732 2467776 5999999999999999 999999753 78
Q ss_pred cEEEEEc--Cccccc-cchhhHhhhhhhhcCCCCccc
Q 018083 287 PVVVVTH--GDLLSL-TDRARIRTYLGELLGIPPAKQ 320 (361)
Q Consensus 287 tvIiiTH--~~~~~~-aDri~vvl~~G~iv~~g~~~~ 320 (361)
|||++|| ..+..+ ||+++ +|++|++++.|+++.
T Consensus 203 tii~~tH~~~~~~~~~~d~i~-~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 203 SIILITHYQRLLDYIKPDYVH-VMQNGKIIKTGDAEL 238 (252)
T ss_pred EEEEEecCHHHHHhhhCCEEE-EEeCCEEEEecChhh
Confidence 9999999 455555 89996 599999999998863
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-34 Score=259.72 Aligned_cols=177 Identities=20% Similarity=0.174 Sum_probs=138.5
Q ss_pred cccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeE
Q 018083 88 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 167 (361)
Q Consensus 88 i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 167 (361)
++|+++.|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~----- 64 (206)
T TIGR03608 1 LKNISKKFGDK---II---LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-----FDSGQVYLNGKETPP----- 64 (206)
T ss_pred CcceEEEECCE---EE---EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccc-----
Confidence 57999999753 45 666999999999999999999999999999999999 999999999987530
Q ss_pred eeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEE
Q 018083 168 EYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 246 (361)
Q Consensus 168 ~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~ 246 (361)
+.. .......+..+++++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 65 ---~~~---~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----------- 126 (206)
T TIGR03608 65 ---LNS---KKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK-KLSKKEKREKKKEALEKVGLNL----------- 126 (206)
T ss_pred ---cch---hhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCchh-----------
Confidence 000 00011234568889999888875 8999998754311 1223344567888999999976
Q ss_pred EEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-Ccccccc
Q 018083 247 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLT 300 (361)
Q Consensus 247 vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~~~a 300 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++|| .....+|
T Consensus 127 ------~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 200 (206)
T TIGR03608 127 ------KLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQA 200 (206)
T ss_pred ------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhc
Confidence 45888999999999999999999 999999752 789999999 3345689
Q ss_pred chhh
Q 018083 301 DRAR 304 (361)
Q Consensus 301 Dri~ 304 (361)
|+++
T Consensus 201 d~i~ 204 (206)
T TIGR03608 201 DRVI 204 (206)
T ss_pred CEEE
Confidence 9984
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-34 Score=261.73 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=143.2
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.|+++|++++|+... ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~~-~~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~--- 69 (221)
T cd03244 2 DIEFKNVSLRYRPNL-PPV---LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-----LSSGSILIDGVDIS--- 69 (221)
T ss_pred cEEEEEEEEecCCCC-ccc---ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhH---
Confidence 378999999997532 145 666999999999999999999999999999999999 99999999997764
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+.....+..++|++|++.+++.++.+|+.+... ...+++.++++.+++.+.+.+-..
T Consensus 70 ------------~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~--------~~~~~~~~~~~~~~l~~~~~~l~~-- 127 (221)
T cd03244 70 ------------KIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--------YSDEELWQALERVGLKEFVESLPG-- 127 (221)
T ss_pred ------------hCCHHHHhhhEEEECCCCccccchHHHHhCcCCC--------CCHHHHHHHHHHhCcHHHHHhccc--
Confidence 1122233556888999988777789999864211 112345555666666542100000
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~ 298 (361)
.-...+++.+.+||+||+||++||||| |||+++||. +.|||++|| +++.
T Consensus 128 ----~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~- 202 (221)
T cd03244 128 ----GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTII- 202 (221)
T ss_pred ----ccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-
Confidence 000012468889999999999999999 999999753 789999999 4454
Q ss_pred ccchhhHhhhhhhhcCCCC
Q 018083 299 LTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~ 317 (361)
.||+++ +|++|++++.|+
T Consensus 203 ~~d~i~-~l~~g~~~~~~~ 220 (221)
T cd03244 203 DSDRIL-VLDKGRVVEFDS 220 (221)
T ss_pred hCCEEE-EEECCeEEecCC
Confidence 599996 599999988765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-34 Score=267.79 Aligned_cols=182 Identities=15% Similarity=0.118 Sum_probs=140.0
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc----ccceeeecccccCcceEeEeeeecCCCcceeeee
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYD 182 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p----~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d 182 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ | ++|+|+++|+++.. . ..
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~~~~~G~i~~~g~~~~~---------------~--~~ 59 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-----PGLTQTSGEILLDGRPLLP---------------L--SI 59 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CccCccccEEEECCEechh---------------h--hh
Confidence 556999999999999999999999999999999999 8 89999999987641 1 11
Q ss_pred cCCCCcccccchH-HH-HH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccC
Q 018083 183 TRSLSDDASDNIN-MI-KL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 259 (361)
Q Consensus 183 ~r~~i~~v~q~~~-l~-~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~ 259 (361)
.+..+++++|++. .+ +. ++.+|+.+...... ......++++.++++.+++.+. ..++++.+.
T Consensus 60 ~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~--------------~~~~~~~~~ 124 (230)
T TIGR02770 60 RGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLG-KLSKQARALILEALEAVGLPDP--------------EEVLKKYPF 124 (230)
T ss_pred hhheeEEEecCchhhcCcccCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHcCCCch--------------HHHHhCChh
Confidence 1235677888864 22 22 56666654332111 1123345668889999999730 004588899
Q ss_pred Cchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--CccccccchhhHhhhhhh
Q 018083 260 DSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGE 311 (361)
Q Consensus 260 ~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~ 311 (361)
+||||||||++||||| ||||++||. ++|||++|| +++..+||+++ +|++|+
T Consensus 125 ~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~-~l~~G~ 203 (230)
T TIGR02770 125 QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVA-VMDDGR 203 (230)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE-EEECCE
Confidence 9999999999999999 999999642 689999999 56778999996 599999
Q ss_pred hcCCCCccccccCCC
Q 018083 312 LLGIPPAKQIFDIPE 326 (361)
Q Consensus 312 iv~~g~~~~i~~~~~ 326 (361)
++..|++++++..+.
T Consensus 204 i~~~~~~~~~~~~~~ 218 (230)
T TIGR02770 204 IVERGTVKEIFYNPK 218 (230)
T ss_pred EEEeCCHHHHHhCcC
Confidence 999999988877654
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-34 Score=253.97 Aligned_cols=212 Identities=15% Similarity=0.140 Sum_probs=170.0
Q ss_pred ccccccccceeeecCc------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 83 GSLTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
+++++++||++.|... ....|++. |||++++|+++||||.||||||||.|+|+|+.+ |++|+|.+|
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~---vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-----PTsG~il~n 73 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKP---VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGEILIN 73 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccc---eEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-----CCCceEEEC
Confidence 5689999999987532 22567666 999999999999999999999999999999999 999999999
Q ss_pred ccccCcceEeEeeeecCCCcceeeeec-CCCCcccccchHH--HHH-HHHhccccceeEEecCCChhhhhhhcccccccC
Q 018083 157 SSVGDGTYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINM--IKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 157 G~~i~~~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l--~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~g 232 (361)
|+.+. +.-+.. ...+.++||+++- .|. .|..-+..++......+.....+++.+-|+++|
T Consensus 74 ~~~L~----------------~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VG 137 (267)
T COG4167 74 DHPLH----------------FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVG 137 (267)
T ss_pred Ccccc----------------ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhc
Confidence 98875 111222 2356778888753 233 443333444444455666778889999999999
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------Cc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 286 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~ 286 (361)
+-++. ++-+|+.||-|||||||+|||| ||...+||- |.
T Consensus 138 L~Pdh----------------an~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~Gi 201 (267)
T COG4167 138 LLPDH----------------ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGI 201 (267)
T ss_pred cCccc----------------cccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCc
Confidence 98753 5889999999999999999998 777777542 89
Q ss_pred cEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 287 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+.|+|+. ..+..++|.|+ ||++|++++.|.+.++|..|.++-++.++.
T Consensus 202 SyiYV~QhlG~iKHi~D~vi-VM~EG~vvE~G~t~~v~a~P~~~~TkRlie 251 (267)
T COG4167 202 SYIYVTQHIGMIKHISDQVL-VMHEGEVVERGSTADVLASPLHELTKRLIE 251 (267)
T ss_pred eEEEEechhhHhhhhcccEE-EEecCceeecCChhhhhcCCccHHHHHHHH
Confidence 9999997 68889999995 699999999999999999999877665543
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-34 Score=293.18 Aligned_cols=200 Identities=11% Similarity=0.118 Sum_probs=153.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc-ccceeeecccccC
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 161 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p-~~G~I~i~G~~i~ 161 (361)
.++|+++|+++.|+.+...++ |+++||+|++|++++|+||||||||||+|+|+|+++ | ++|+|.++|+++.
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~v---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~~~G~i~~~g~~~~ 328 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKR---VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP-----GRWEGEIFIDGKPVK 328 (506)
T ss_pred CceEEEecCcccccccccccc---ccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCcEEEECCEECC
Confidence 357999999999952111246 566999999999999999999999999999999997 6 8999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchH---HHHH-HHHhccccceeE-Eec---CCChhhhhhhcccccccCC
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN---MIKL-WIMEGVRHGELV-IRR---SDSSSLRNRMRCKAHKIGC 233 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~---l~~~-ti~~ni~~~~~~-~~~---~~~~~~~~~v~~~l~~~gl 233 (361)
.. . .....+..++|++|++. +++. ++.+|+.++... ... .+....++++.++++.+++
T Consensus 329 ~~-------------~-~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 394 (506)
T PRK13549 329 IR-------------N-PQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV 394 (506)
T ss_pred CC-------------C-HHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCc
Confidence 10 0 00112345788899863 4444 888998875321 101 1223344668889999999
Q ss_pred CcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccE
Q 018083 234 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV 288 (361)
Q Consensus 234 ~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tv 288 (361)
.+. .+++++.+||||||||++||||| ||||++||. |+||
T Consensus 395 ~~~----------------~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 458 (506)
T PRK13549 395 KTA----------------SPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAI 458 (506)
T ss_pred cCC----------------CcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEE
Confidence 631 24889999999999999999999 999999763 8999
Q ss_pred EEEEc--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 289 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 289 IiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
|++|| +.+..+|||++ +|++|+++..++++++
T Consensus 459 i~~sHd~~~~~~~~d~v~-~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 459 IVISSELPEVLGLSDRVL-VMHEGKLKGDLINHNL 492 (506)
T ss_pred EEECCCHHHHHHhCCEEE-EEECCEEEEEeccccC
Confidence 99999 56789999996 5999999988876544
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-34 Score=295.59 Aligned_cols=208 Identities=14% Similarity=0.165 Sum_probs=153.7
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh--cccccccccceeeecccccC-c
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSVGD-G 162 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~--~~~~~~p~~G~I~i~G~~i~-~ 162 (361)
|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|.... .
T Consensus 1 l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~-----p~~G~i~~~~~~~~~~ 69 (520)
T TIGR03269 1 IEVKNLTKKFDGK---EV---LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE-----PTSGRIIYHVALCEKC 69 (520)
T ss_pred CEEEEEEEEECCe---Ee---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC-----CCceEEEEeccccccc
Confidence 5789999999652 45 66699999999999999999999999999999996 7 89999999742110 0
Q ss_pred ceEeEeeeec------CCC-----cce------eeeecCCCCcccccc-hHHHHH-HHHhccccceeEEecCCChhhhhh
Q 018083 163 TYFLQEYTIP------RGS-----NSF------SLYDTRSLSDDASDN-INMIKL-WIMEGVRHGELVIRRSDSSSLRNR 223 (361)
Q Consensus 163 ~~~~~~~~i~------~~~-----~~~------~~~d~r~~i~~v~q~-~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~ 223 (361)
++..|..... ... ... .....+..+++++|+ ..+++. ++.+|+.++.... ..+..+.+++
T Consensus 70 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~ 148 (520)
T TIGR03269 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI-GYEGKEAVGR 148 (520)
T ss_pred cccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc-CCCHHHHHHH
Confidence 1111100000 000 000 011234567889997 456554 8889998764321 1223445567
Q ss_pred hcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------
Q 018083 224 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------- 284 (361)
Q Consensus 224 v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------- 284 (361)
+.++++.+++.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 149 ~~~~l~~~gl~~-----------------~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 211 (520)
T TIGR03269 149 AVDLIEMVQLSH-----------------RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNAL 211 (520)
T ss_pred HHHHHHHcCChh-----------------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHH
Confidence 888999999976 45889999999999999999999 999999753
Q ss_pred -------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 285 -------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 285 -------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
|+|||+||| +.+..+||+++ +|++|+++..|++++++.
T Consensus 212 ~~l~~~~g~tviivtHd~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 212 EEAVKASGISMVLTSHWPEVIEDLSDKAI-WLENGEIKEEGTPDEVVA 258 (520)
T ss_pred HHHHHhcCcEEEEEeCCHHHHHHhcCEEE-EEeCCEEeeecCHHHHHH
Confidence 789999999 56678999996 599999998888877654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-34 Score=294.26 Aligned_cols=209 Identities=12% Similarity=0.177 Sum_probs=154.6
Q ss_pred ccccccccceeeecC--cceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec-ccc
Q 018083 83 GSLTDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SSV 159 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~--~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~-G~~ 159 (361)
.++|+++|++++|++ ....++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++ |.+
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~i---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~g~~ 348 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKA---VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-----PTSGEVNVRVGDE 348 (520)
T ss_pred CceEEEeccEEEeccCCCCCceE---EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEecCCc
Confidence 458999999999953 111245 666999999999999999999999999999999999 999999996 643
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
... .. . .. .......+..++|++|++.+++. ++.+|+.++... ..+....++++.++++.+++.+..
T Consensus 349 ~~~--~~-~--~~----~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~- 416 (520)
T TIGR03269 349 WVD--MT-K--PG----PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL--ELPDELARMKAVITLKMVGFDEEK- 416 (520)
T ss_pred ccc--cc-c--cc----hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCCCCcc-
Confidence 210 00 0 00 00001123457889998777665 888998764321 112223445677889999996410
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
...++++++.+||||||||++||||| ||||++||. |.|||+||
T Consensus 417 -----------~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vs 485 (520)
T TIGR03269 417 -----------AEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVS 485 (520)
T ss_pred -----------chhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 00035889999999999999999999 999999653 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
| +.+..+|||++ +|++|+++..|++++++.
T Consensus 486 Hd~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 486 HDMDFVLDVCDRAA-LMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred CCHHHHHHhCCEEE-EEECCEEEEECCHHHHHh
Confidence 9 56778999996 599999999888776643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-33 Score=291.77 Aligned_cols=191 Identities=12% Similarity=0.103 Sum_probs=149.4
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|+ .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 263 ~~~l~~~~l~~~~~-----~~---l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~g~~~~~ 329 (510)
T PRK09700 263 ETVFEVRNVTSRDR-----KK---VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-----RAGGEIRLNGKDISP 329 (510)
T ss_pred CcEEEEeCccccCC-----Cc---ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCEECCC
Confidence 34799999999763 24 666999999999999999999999999999999999 999999999977641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccch---HHHHH-HHHhccccceeEE----e---c-CCChhhhhhhcccccc
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI---NMIKL-WIMEGVRHGELVI----R---R-SDSSSLRNRMRCKAHK 230 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~---~l~~~-ti~~ni~~~~~~~----~---~-~~~~~~~~~v~~~l~~ 230 (361)
. ......+..++|++|++ .+++. ++.+|+.++.... . . ......++++.++++.
T Consensus 330 ~--------------~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 395 (510)
T PRK09700 330 R--------------SPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQREL 395 (510)
T ss_pred C--------------CHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHh
Confidence 0 00112234678899973 45555 8889988754210 0 0 0122233567788999
Q ss_pred cCCC-cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------
Q 018083 231 IGCE-PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 284 (361)
Q Consensus 231 ~gl~-~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------- 284 (361)
+++. + .+++++.+||||||||++||||| ||||++||.
T Consensus 396 ~~l~~~-----------------~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~ 458 (510)
T PRK09700 396 LALKCH-----------------SVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD 458 (510)
T ss_pred cCCCCC-----------------CccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC
Confidence 9996 5 34899999999999999999999 999999763
Q ss_pred CccEEEEEc--CccccccchhhHhhhhhhhcCCCCc
Q 018083 285 DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 285 g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
|.|||++|| +.+..+|||++ +|++|+++..++.
T Consensus 459 g~tvi~vsHd~~~~~~~~d~i~-~l~~G~i~~~~~~ 493 (510)
T PRK09700 459 GKVILMVSSELPEIITVCDRIA-VFCEGRLTQILTN 493 (510)
T ss_pred CCEEEEEcCCHHHHHhhCCEEE-EEECCEEEEEecC
Confidence 889999999 46789999996 5999999876655
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-33 Score=261.44 Aligned_cols=191 Identities=14% Similarity=0.141 Sum_probs=146.8
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+.++|++++|++.+ ..++ |+++||+|++||+++|+||||||||||+++|+|+++... |++|+|.++|.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~--~~~G~i~~~g~~~~-- 75 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARI---LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGG--TTSGQILFNGQPRK-- 75 (226)
T ss_pred cceeecceeeeecCcccccc---ccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCC--CCceEEEECCEECC--
Confidence 467999999997542 2356 555999999999999999999999999999999986221 58999999997653
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec--CCChhhhhhhcc-cccccCCCcceeE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR--SDSSSLRNRMRC-KAHKIGCEPSVIR 239 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~--~~~~~~~~~v~~-~l~~~gl~~~~~~ 239 (361)
. ...+..+++++|++.+++. ++.+|+.++...... .........+.+ +++.+++.+
T Consensus 76 -------------~---~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 135 (226)
T cd03234 76 -------------P---DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR---- 135 (226)
T ss_pred -------------h---HHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh----
Confidence 0 1234567888998887776 899999875331110 111112223444 788888876
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcC
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG 294 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~ 294 (361)
+.++.+.+|||||+||++||||| |||+++||. +.|+|++||+
T Consensus 136 -------------~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~ 202 (226)
T cd03234 136 -------------IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQ 202 (226)
T ss_pred -------------hhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 44788999999999999999999 999999753 7899999993
Q ss_pred ---ccccccchhhHhhhhhhhcCCC
Q 018083 295 ---DLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 295 ---~~~~~aDri~vvl~~G~iv~~g 316 (361)
++..+||+++ +|++|++++.|
T Consensus 203 ~~~~~~~~~d~i~-~l~~G~i~~~g 226 (226)
T cd03234 203 PRSDLFRLFDRIL-LLSSGEIVYSG 226 (226)
T ss_pred CCHHHHHhCCEEE-EEeCCEEEecC
Confidence 5789999996 59999998764
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-34 Score=268.64 Aligned_cols=203 Identities=15% Similarity=0.087 Sum_probs=147.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..+.|+++|++++|+... ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 16 ~~~~i~~~~l~~~~~~~~-~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~i~ 86 (257)
T cd03288 16 LGGEIKIHDLCVRYENNL-KPV---LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD-----IFDGKIVIDGIDIS 86 (257)
T ss_pred CCceEEEEEEEEEeCCCC-Ccc---eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC-----CCCCeEEECCEEhh
Confidence 345799999999997532 135 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......+..++|++|++.+++.++.+|+..... . ..+.+..+++.+++...+...+
T Consensus 87 ---------------~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~----~----~~~~~~~~l~~~~l~~~~~~~~ 143 (257)
T cd03288 87 ---------------KLPLHTLRSRLSIILQDPILFSGSIRFNLDPECK----C----TDDRLWEALEIAQLKNMVKSLP 143 (257)
T ss_pred ---------------hCCHHHHhhhEEEECCCCcccccHHHHhcCcCCC----C----CHHHHHHHHHHhCcHHHHhhcc
Confidence 1122234556788999988877788888763211 0 1112222333333322100000
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
..+ + ..++..+.+||+||+||++||||| ||||++||. +.|||++|| ..
T Consensus 144 ~~l----~--~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~ 217 (257)
T cd03288 144 GGL----D--AVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVST 217 (257)
T ss_pred ccc----C--cEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHH
Confidence 000 0 023567789999999999999999 999999753 799999999 34
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+. .|||++ +|++|++++.|+++++...
T Consensus 218 ~~-~~dri~-~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 218 IL-DADLVL-VLSRGILVECDTPENLLAQ 244 (257)
T ss_pred HH-hCCEEE-EEECCEEEEeCCHHHHHhc
Confidence 44 499996 5999999999998877654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-34 Score=250.56 Aligned_cols=183 Identities=10% Similarity=0.078 Sum_probs=155.9
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+++++++.+.-++. ++ |+++||++.+||+++|+||||||||||+|+++.|.. |++|.+++.|+++.
T Consensus 3 lle~kq~~y~a~~a---~i---l~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis-----p~~G~l~f~Ge~vs--- 68 (223)
T COG4619 3 LLELKQVGYLAGDA---KI---LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDVS--- 68 (223)
T ss_pred chHHHHHHhhcCCC---ee---ecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC-----CCCceEEEcCcccc---
Confidence 46777776555443 45 666999999999999999999999999999999999 99999999999987
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+.+...|..++|+.|.+.+|+.+|.+|+.|+...+. +...+..+..+++++++.+.+
T Consensus 69 ------------~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~---rr~dr~aa~~llar~~l~~~~------- 126 (223)
T COG4619 69 ------------TLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRN---RRPDRAAALDLLARFALPDSI------- 126 (223)
T ss_pred ------------ccChHHHHHHHHHHHcCccccccchhhccccchHHhc---cCCChHHHHHHHHHcCCchhh-------
Confidence 4566677888999999999999999999999987543 233566777889999998754
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
+++...+||||++||++|+|.| ||||++||+ ...+++||| +.+
T Consensus 127 ---------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa 197 (223)
T COG4619 127 ---------LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQA 197 (223)
T ss_pred ---------hcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHH
Confidence 6899999999999999999998 999999864 789999999 567
Q ss_pred ccccchhhHhhhhhhhc
Q 018083 297 LSLTDRARIRTYLGELL 313 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv 313 (361)
.+.+|+++ .+..|++=
T Consensus 198 ~rha~k~i-tl~~G~~~ 213 (223)
T COG4619 198 IRHADKVI-TLQPGHAG 213 (223)
T ss_pred hhhhheEE-EeccCccc
Confidence 89999994 67777663
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-34 Score=264.66 Aligned_cols=170 Identities=14% Similarity=0.153 Sum_probs=129.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.. .....+..
T Consensus 37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~~----------------~~~~~~~~ 95 (236)
T cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-----PTSGEVRVAGLVPWK----------------RRKKFLRR 95 (236)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEccc----------------cchhhccc
Confidence 566999999999999999999999999999999999 999999999976430 00112334
Q ss_pred Ccccc-cchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhh
Q 018083 187 SDDAS-DNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 264 (361)
Q Consensus 187 i~~v~-q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGG 264 (361)
++|++ |...+++. ++.+|+.+..... ........+++.++++.+++.+ .+++++.+||||
T Consensus 96 i~~~~~~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~-----------------~~~~~~~~LS~G 157 (236)
T cd03267 96 IGVVFGQKTQLWWDLPVIDSFYLLAAIY-DLPPARFKKRLDELSELLDLEE-----------------LLDTPVRQLSLG 157 (236)
T ss_pred EEEEcCCccccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh-----------------HhcCChhhCCHH
Confidence 56665 44444433 6777776533211 1222334556777888899976 358889999999
Q ss_pred hhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--CccccccchhhHhhhhhhhcCCC
Q 018083 265 KQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 265 qrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g 316 (361)
||||++||||| ||||++||. +.|||++|| .++..+||+++ +|++|++++.|
T Consensus 158 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~-~l~~G~i~~~g 236 (236)
T cd03267 158 QRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVL-VIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEE-EEeCCEEEecC
Confidence 99999999999 999999752 689999999 45678999996 59999987654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-34 Score=322.41 Aligned_cols=200 Identities=12% Similarity=0.102 Sum_probs=166.1
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+.|+++||+++|++... ++ |+|+||+|++||.+||+|+||||||||+++|.|+++ ++|+|.+||.++.
T Consensus 1216 g~I~f~nVs~~Y~~~~~-~v---L~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~------~~G~I~IdG~di~-- 1283 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGR-AV---LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS------TEGEIQIDGVSWN-- 1283 (1490)
T ss_pred CeEEEEEEEEEeCCCCc-ce---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEcc--
Confidence 36999999999975432 46 666999999999999999999999999999999986 4799999999987
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.+.+.+.|+.+++|+|++.+|+.||++|+... .....+++.++++.+++.+.+...++.
T Consensus 1284 -------------~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~--------~~~tdeei~~aL~~~~L~~~i~~lp~G 1342 (1490)
T TIGR01271 1284 -------------SVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY--------EQWSDEEIWKVAEEVGLKSVIEQFPDK 1342 (1490)
T ss_pred -------------cCCHHHHHhceEEEeCCCccCccCHHHHhCcc--------cCCCHHHHHHHHHHCCCHHHHHhCccc
Confidence 56677889999999999999999999999631 123456788889999987755444455
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Ccccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLS 298 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~~ 298 (361)
+.+.|++ ....||||||||++||||| ||||+++|. ++|||+||| -....
T Consensus 1343 Ldt~v~e------~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~ 1416 (1490)
T TIGR01271 1343 LDFVLVD------GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALL 1416 (1490)
T ss_pred ccccccc------CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 5554443 3447999999999999998 999999763 899999999 44556
Q ss_pred ccchhhHhhhhhhhcCCCCcccccc
Q 018083 299 LTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
.||||+ +|++|+|++.|+|++++.
T Consensus 1417 ~~DrIl-vL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1417 ECQQFL-VIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred hCCEEE-EEECCEEEEeCCHHHHHc
Confidence 699995 699999999999999985
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-33 Score=263.92 Aligned_cols=178 Identities=15% Similarity=0.176 Sum_probs=138.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 3 ~~l~~~~l~~~~~~~---~v---l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~~~~---- 67 (251)
T PRK09544 3 SLVSLENVSVSFGQR---RV---LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-----PDEGVIKRNGKL---- 67 (251)
T ss_pred cEEEEeceEEEECCc---eE---EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCcc----
Confidence 479999999999753 35 666999999999999999999999999999999999 999999987621
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHH---HHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK---LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~---~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.++|++|++.+++ .++.+++.+.. ....+++.++++.+++.+
T Consensus 68 ----------------------~i~~v~q~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~l~~~gl~~----- 112 (251)
T PRK09544 68 ----------------------RIGYVPQKLYLDTTLPLTVNRFLRLRP--------GTKKEDILPALKRVQAGH----- 112 (251)
T ss_pred ----------------------CEEEeccccccccccChhHHHHHhccc--------cccHHHHHHHHHHcCChH-----
Confidence 1334444433222 13444443210 112345677889999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| ||||++||. +.|||++||
T Consensus 113 ------------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 113 ------------LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred ------------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45889999999999999999999 999999652 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+++..+||+++ +|+ ++++..|++++++..+
T Consensus 181 ~~~i~~~~d~i~-~l~-~~i~~~g~~~~~~~~~ 211 (251)
T PRK09544 181 LHLVMAKTDEVL-CLN-HHICCSGTPEVVSLHP 211 (251)
T ss_pred HHHHHHhCCEEE-EEC-CceEeeCCHHHHhCCH
Confidence 56778999996 486 4799999988876543
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-33 Score=247.35 Aligned_cols=219 Identities=17% Similarity=0.143 Sum_probs=164.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..|++++.++++.|++. .. .++|||++.|||.++|+|+||||||||++||++-+. |++|+|.|.-.+-.
T Consensus 3 ~~PLL~V~~lsk~Yg~~---~g---c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-----p~~G~v~Y~~r~~~ 71 (258)
T COG4107 3 DKPLLSVSGLSKLYGPG---KG---CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-----PDAGTVTYRMRDGQ 71 (258)
T ss_pred CCcceeehhhhhhhCCC---cC---ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-----CCCCeEEEEcCCCC
Confidence 35789999999999875 34 566999999999999999999999999999999999 99999998764422
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH---HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL---WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~---ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
. ..-+.+.. .-.-.-.|.-.++|.|||.--.. +...||..-+...+...-..+++.+.++|+.+.++...
T Consensus 72 ~---~dl~~msE---aeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~R- 144 (258)
T COG4107 72 P---RDLYTMSE---AERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDR- 144 (258)
T ss_pred c---hhHhhhch---HHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCccc-
Confidence 0 00000000 00001124456888888863222 44445543332221111245677888899999998643
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
.+..|.++|||||||+.|||.| ||||.+|+- +.+++++|
T Consensus 145 ---------------iDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVT 209 (258)
T COG4107 145 ---------------IDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209 (258)
T ss_pred ---------------ccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEe
Confidence 4889999999999999999998 999999752 88999999
Q ss_pred cC--ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 293 HG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 293 H~--~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
|+ .+.-++||.+ +|++|++++.|-++++++.|.++|+.-++
T Consensus 210 HDl~VarLla~rlm-vmk~g~vve~GLTDrvLDDP~hPYTQLLV 252 (258)
T COG4107 210 HDLAVARLLADRLM-VMKQGQVVESGLTDRVLDDPHHPYTQLLV 252 (258)
T ss_pred chhHHHHHhhhcce-eecCCCEeccccccccccCCCCchHHHHH
Confidence 94 4557799996 69999999999999999999999976444
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-33 Score=254.82 Aligned_cols=177 Identities=14% Similarity=0.148 Sum_probs=137.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+.|+++|++++|+... ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 5 ~~l~~~~l~~~~~~~~-~~~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~-- 73 (207)
T cd03369 5 GEIEVENLSVRYAPDL-PPV---LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-----AEEGKIEIDGIDIS-- 73 (207)
T ss_pred CeEEEEEEEEEeCCCC-ccc---ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEhH--
Confidence 4689999999997532 145 666999999999999999999999999999999999 99999999998763
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..++|++|++.+++.++.+|+.+... ...+++.++++ +
T Consensus 74 -------------~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~--------~~~~~~~~~l~-------~------ 119 (207)
T cd03369 74 -------------TIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE--------YSDEEIYGALR-------V------ 119 (207)
T ss_pred -------------HCCHHHHHhhEEEEecCCcccCccHHHHhcccCC--------CCHHHHHHHhh-------c------
Confidence 1112223456888999988777789999864211 11122333332 1
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
++.+.+|||||+||++||||| |||+++||. +.|+|++|| +.+.
T Consensus 120 -----------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 120 -----------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred -----------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 456889999999999999999 999999753 789999999 3444
Q ss_pred cccchhhHhhhhhhhcCCCCc
Q 018083 298 SLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~ 318 (361)
. ||+++ +|++|+++..|++
T Consensus 189 ~-~d~v~-~l~~g~i~~~g~~ 207 (207)
T cd03369 189 D-YDKIL-VMDAGEVKEYDHP 207 (207)
T ss_pred h-CCEEE-EEECCEEEecCCC
Confidence 4 99996 5999999887753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-33 Score=256.84 Aligned_cols=176 Identities=14% Similarity=0.119 Sum_probs=139.8
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|++. ++ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 8 ~~~~l~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~i~ 76 (214)
T PRK13543 8 APPLLAAHALAFSRNEE---PV---FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-----VESGQIQIDGKTAT 76 (214)
T ss_pred CcceEEEeeEEEecCCc---ee---eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCeeEEECCEEcc
Confidence 45689999999999753 45 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. . ..+..+++++|++.+++. ++.+|+.+..... .....+.+.++++.+++.+
T Consensus 77 ~---------------~---~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~----~~~~~~~~~~~l~~~~l~~----- 129 (214)
T PRK13543 77 R---------------G---DRSRFMAYLGHLPGLKADLSTLENLHFLCGLH----GRRAKQMPGSALAIVGLAG----- 129 (214)
T ss_pred c---------------h---hhhhceEEeecCcccccCCcHHHHHHHHHHhc----CCcHHHHHHHHHHHcCChh-----
Confidence 1 0 122346677887766665 7888876543211 1122345667888889876
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
.+++++.+||||||||++||||+ |||+++||. +.|||++||
T Consensus 130 ------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (214)
T PRK13543 130 ------------YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA 197 (214)
T ss_pred ------------hccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 34888999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhh
Q 018083 294 GDLLSLTDRARIRTY 308 (361)
Q Consensus 294 ~~~~~~aDri~vvl~ 308 (361)
+++..+||++++ +.
T Consensus 198 ~~~~~~~~~i~~-l~ 211 (214)
T PRK13543 198 YAAPPVRTRMLT-LE 211 (214)
T ss_pred hhhhhhcceEEE-Ee
Confidence 578899999953 54
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-33 Score=264.53 Aligned_cols=187 Identities=16% Similarity=0.182 Sum_probs=145.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++||++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ + +|+|.++|+++.
T Consensus 1 ~~~~~l~~~-------~~---l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-----~-~G~i~~~g~~i~---- 60 (248)
T PRK03695 1 MQLNDVAVS-------TR---LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-----G-SGSIQFAGQPLE---- 60 (248)
T ss_pred Ccccccchh-------ce---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----C-CeEEEECCEecC----
Confidence 357888875 13 667999999999999999999999999999999986 5 899999998764
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.......+..++|++|++.++.. ++.+|+.+.... ........+++.++++.+++.+
T Consensus 61 -----------~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~l~~--------- 118 (248)
T PRK03695 61 -----------AWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPD--KTRTEAVASALNEVAEALGLDD--------- 118 (248)
T ss_pred -----------cCCHHHHhhheEEecccCccCCCccHHHHHHhcCcc--CCCcHHHHHHHHHHHHHcCCHh---------
Confidence 11111223446788888654433 788888765321 1122334567788899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc----------------CCCceeecC----------------CccEEEEE
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVVT 292 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----------------DEPt~~L~~----------------g~tvIiiT 292 (361)
.+++++.+||||||||++||||| |||+++||. +.|||++|
T Consensus 119 --------~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~s 190 (248)
T PRK03695 119 --------KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSS 190 (248)
T ss_pred --------HhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45889999999999999998875 899998652 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
| +.+..+||+++ +|++|++++.|++++++.
T Consensus 191 H~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 191 HDLNHTLRHADRVW-LLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cCHHHHHHhCCEEE-EEECCEEEEECCHHHHhC
Confidence 9 46789999996 599999999998877654
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-33 Score=260.19 Aligned_cols=193 Identities=16% Similarity=0.070 Sum_probs=137.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh--cccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~--~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+|+++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|.++..
T Consensus 1 ~i~~~nl~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~~~~ 69 (248)
T PRK09580 1 MLSIKDLHVSVEDK---AI---LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKDLLE 69 (248)
T ss_pred CeEEEEEEEEeCCe---ee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC-----CCceEEEECCCcccc
Confidence 47899999999753 45 66699999999999999999999999999999994 6 899999999987641
Q ss_pred ceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-H-------HHhccccceeEEecCCChhhhhhhcccccccCC
Q 018083 163 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-W-------IMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 233 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-t-------i~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl 233 (361)
...... +..+++++|++.+++. + +.+++..... ..........+.+.++++.+++
T Consensus 70 ---------------~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l 133 (248)
T PRK09580 70 ---------------LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG-QEPLDRFDFQDLMEEKIALLKM 133 (248)
T ss_pred ---------------CCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccc-cccchHHHHHHHHHHHHHHcCC
Confidence 111111 2345666676544332 1 1222211000 0001112234556677888888
Q ss_pred CcceeEEEEEEEEEEechhhhhhccC-Cchhhhhhhhhhhhcc---------CCCceeecC----------------Ccc
Q 018083 234 EPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKP 287 (361)
Q Consensus 234 ~~~~~~~~~~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~t 287 (361)
.+. +.++.+. +||||||||++||||| ||||++||. ++|
T Consensus 134 ~~~----------------~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~t 197 (248)
T PRK09580 134 PED----------------LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRS 197 (248)
T ss_pred Chh----------------hcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCE
Confidence 532 2355664 7999999999999999 999999753 789
Q ss_pred EEEEEc--Cccccc-cchhhHhhhhhhhcCCCCcccc
Q 018083 288 VVVVTH--GDLLSL-TDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 288 vIiiTH--~~~~~~-aDri~vvl~~G~iv~~g~~~~i 321 (361)
||++|| ..+..+ ||+++ +|++|+++..|+++.+
T Consensus 198 iii~sH~~~~~~~~~~d~i~-~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 198 FIIVTHYQRILDYIKPDYVH-VLYQGRIVKSGDFTLV 233 (248)
T ss_pred EEEEeCCHHHHHhhhCCEEE-EEECCeEEEeCCHHHH
Confidence 999999 455555 89995 5999999998887633
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-33 Score=251.89 Aligned_cols=168 Identities=14% Similarity=0.096 Sum_probs=135.3
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (201)
T cd03231 1 LEADELTCERDGR---AL---FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-----PLAGRVLLNGGPLDF--- 66 (201)
T ss_pred CEEEEEEEEeCCc---ee---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEeccc---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999977531
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. ....+..+++++|++.+++. ++.+|+.+... ....+++.++++.+++.+
T Consensus 67 ------------~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~l~~~~l~~--------- 117 (201)
T cd03231 67 ------------Q-RDSIARGLLYLGHAPGIKTTLSVLENLRFWHA-------DHSDEQVEEALARVGLNG--------- 117 (201)
T ss_pred ------------c-cHHhhhheEEeccccccCCCcCHHHHHHhhcc-------cccHHHHHHHHHHcCChh---------
Confidence 0 01234457788888766554 88898876422 112456778889999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
..++++.+||||||||++||||| ||||++||. +.|+|++|| ....
T Consensus 118 --------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~ 189 (201)
T cd03231 118 --------FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLS 189 (201)
T ss_pred --------hhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhh
Confidence 34788999999999999999999 999999753 789999999 4566
Q ss_pred cccchhh
Q 018083 298 SLTDRAR 304 (361)
Q Consensus 298 ~~aDri~ 304 (361)
.+|++++
T Consensus 190 ~~~~~~~ 196 (201)
T cd03231 190 EAGAREL 196 (201)
T ss_pred hccceeE
Confidence 8899984
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-33 Score=248.78 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=121.1
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
+++|++++|+.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 ~~~~l~~~~~~~---~~---l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-----~~~G~v~~~g~~~~----- 64 (180)
T cd03214 1 EVENLSVGYGGR---TV---LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-----PSSGEILLDGKDLA----- 64 (180)
T ss_pred CeeEEEEEECCe---ee---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECC-----
Confidence 578999999752 45 666999999999999999999999999999999999 99999999997764
Q ss_pred EeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEE
Q 018083 167 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 246 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~ 246 (361)
.+.....+..++|++| +++.+++.+
T Consensus 65 ----------~~~~~~~~~~i~~~~q----------------------------------~l~~~gl~~----------- 89 (180)
T cd03214 65 ----------SLSPKELARKIAYVPQ----------------------------------ALELLGLAH----------- 89 (180)
T ss_pred ----------cCCHHHHHHHHhHHHH----------------------------------HHHHcCCHh-----------
Confidence 1111112223344444 466677765
Q ss_pred EEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccccc
Q 018083 247 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 247 vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~ 298 (361)
.+++.+.+|||||+||++||||| ||||++||. +.|+|++|| +++..
T Consensus 90 ------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 90 ------LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred ------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 34778899999999999999999 999999652 679999999 56668
Q ss_pred ccchhhHhhhhhhhcCC
Q 018083 299 LTDRARIRTYLGELLGI 315 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~ 315 (361)
+||+++ +|++|+++..
T Consensus 164 ~~d~~~-~l~~g~i~~~ 179 (180)
T cd03214 164 YADRVI-LLKDGRIVAQ 179 (180)
T ss_pred hCCEEE-EEECCEEEec
Confidence 999996 5999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-33 Score=255.43 Aligned_cols=180 Identities=17% Similarity=0.156 Sum_probs=136.5
Q ss_pred ccccccceeeecC----cceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc--c
Q 018083 85 LTDAKNKILSYTP----GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS--S 158 (361)
Q Consensus 85 ~lei~nl~~~Y~~----~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G--~ 158 (361)
+|+++|++++|+. +....+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~~~g~ 72 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPV---LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-----PDSGRILVRHEGA 72 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEE---EecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEEecCCC
Confidence 4789999999963 111245 566999999999999999999999999999999999 9999999984 2
Q ss_pred --ccCcceEeEeeeecCCCcceeee---ec-CCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhccccccc
Q 018083 159 --VGDGTYFLQEYTIPRGSNSFSLY---DT-RSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 159 --~i~~~~~~~~~~i~~~~~~~~~~---d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~ 231 (361)
++. .+... +. +..++|++|++.+++. ++.+|+.++.... ........+++.++++.+
T Consensus 73 ~~~~~---------------~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~ 136 (224)
T TIGR02324 73 WVDLA---------------QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-GVPREAARARARELLARL 136 (224)
T ss_pred ccchh---------------hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHc
Confidence 221 01111 11 2357888998877665 7888887643211 122234456778889999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------Cc
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DK 286 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~ 286 (361)
++.+. +.++++.+||||||||++||||| ||||++||. |+
T Consensus 137 ~l~~~----------------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~ 200 (224)
T TIGR02324 137 NIPER----------------LWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGA 200 (224)
T ss_pred CCchh----------------hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 99752 23678999999999999999999 999999753 78
Q ss_pred cEEEEEc--Cccccccchhh
Q 018083 287 PVVVVTH--GDLLSLTDRAR 304 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~ 304 (361)
|||++|| ..+..+|||++
T Consensus 201 tii~vsH~~~~~~~~~d~i~ 220 (224)
T TIGR02324 201 ALIGIFHDEEVRELVADRVM 220 (224)
T ss_pred EEEEEeCCHHHHHHhcceeE
Confidence 9999999 35567899984
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-33 Score=285.54 Aligned_cols=196 Identities=14% Similarity=0.129 Sum_probs=150.1
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc-ccceeeecccccCc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p-~~G~I~i~G~~i~~ 162 (361)
.+|+++|+++.|+.+....+ |+++||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|+++..
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~~G~i~~~g~~~~~ 327 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKR---VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-----GKFEGNVFINGKPVDI 327 (500)
T ss_pred ceEEEeCCcccccccccccc---cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCeEEEECCEECCC
Confidence 47999999999942111245 566999999999999999999999999999999998 7 79999999987631
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH---HHHH-HHHhccccceeE-Ee---cCCChhhhhhhcccccccCCC
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN---MIKL-WIMEGVRHGELV-IR---RSDSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~---l~~~-ti~~ni~~~~~~-~~---~~~~~~~~~~v~~~l~~~gl~ 234 (361)
. ......+..+++++|++. +++. ++.+|+.++... .. .......++++.++++.+++.
T Consensus 328 ~--------------~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (500)
T TIGR02633 328 R--------------NPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393 (500)
T ss_pred C--------------CHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCcc
Confidence 0 001123456889999863 5554 888888875321 10 111223345678899999996
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
.. ..++++.+||||||||++||||| ||||++||. |.|||
T Consensus 394 ~~----------------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi 457 (500)
T TIGR02633 394 TA----------------SPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457 (500)
T ss_pred CC----------------CccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEE
Confidence 42 23889999999999999999999 999999763 88999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCc
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
++|| +++..+|||++ +|++|+++...+.
T Consensus 458 ivsHd~~~~~~~~d~v~-~l~~G~i~~~~~~ 487 (500)
T TIGR02633 458 VVSSELAEVLGLSDRVL-VIGEGKLKGDFVN 487 (500)
T ss_pred EECCCHHHHHHhCCEEE-EEECCEEEEEEcc
Confidence 9999 57789999996 5999999875543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-33 Score=284.64 Aligned_cols=189 Identities=13% Similarity=0.077 Sum_probs=148.1
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++++++|+++ .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 256 ~~l~~~~l~~--------~~---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~g~~i~~- 318 (501)
T PRK10762 256 VRLKVDNLSG--------PG---VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-----RTSGYVTLDGHEVVT- 318 (501)
T ss_pred cEEEEeCccc--------CC---cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCC-
Confidence 4688888874 13 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceee-eecCCCCcccccch---HHHHH-HHHhccccceeEE-e----cCCChhhhhhhcccccccCC
Q 018083 164 YFLQEYTIPRGSNSFSL-YDTRSLSDDASDNI---NMIKL-WIMEGVRHGELVI-R----RSDSSSLRNRMRCKAHKIGC 233 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~-~d~r~~i~~v~q~~---~l~~~-ti~~ni~~~~~~~-~----~~~~~~~~~~v~~~l~~~gl 233 (361)
... ...+..++|++|++ .+++. ++.+|+.++.... . .......++++.++++.+++
T Consensus 319 --------------~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 384 (501)
T PRK10762 319 --------------RSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNI 384 (501)
T ss_pred --------------CCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCC
Confidence 110 11234588999986 34444 8889887653210 0 01222345668889999999
Q ss_pred C-cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------Ccc
Q 018083 234 E-PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKP 287 (361)
Q Consensus 234 ~-~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~t 287 (361)
. + .+++++.+||||||||++||||| ||||++||. |.|
T Consensus 385 ~~~-----------------~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t 447 (501)
T PRK10762 385 KTP-----------------SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLS 447 (501)
T ss_pred CCC-----------------CccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCE
Confidence 5 4 24889999999999999999999 999999763 789
Q ss_pred EEEEEc--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 288 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 288 vIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
||++|| +.+..+||+++ +|++|+++..++++++
T Consensus 448 viivtHd~~~~~~~~d~v~-~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 448 IILVSSEMPEVLGMSDRIL-VMHEGRISGEFTREQA 482 (501)
T ss_pred EEEEcCCHHHHHhhCCEEE-EEECCEEEEEeccccC
Confidence 999999 57789999996 5999999988877544
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-32 Score=248.75 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=133.1
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (198)
T TIGR01189 1 LAARNLACSRGER---ML---FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-----PDSGEVRWNGTALAE--- 66 (198)
T ss_pred CEEEEEEEEECCE---EE---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEccc---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.. ...+..++|++|+..+++. ++.+|+.+..... . .. ++++.++++.+++.+
T Consensus 67 ------------~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~-~~-~~~~~~~l~~~~l~~--------- 119 (198)
T TIGR01189 67 ------------QR-DEPHRNILYLGHLPGLKPELSALENLHFWAAIH---G-GA-QRTIEDALAAVGLTG--------- 119 (198)
T ss_pred ------------ch-HHhhhheEEeccCcccccCCcHHHHHHHHHHHc---C-Cc-HHHHHHHHHHcCCHH---------
Confidence 00 1123456778887766654 8888887643211 1 11 345677889999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcCccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHGDLLSL 299 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~~~~~~ 299 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++||+.....
T Consensus 120 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 120 --------FEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191 (198)
T ss_pred --------HhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence 45889999999999999999999 999999753 789999999655555
Q ss_pred cchh
Q 018083 300 TDRA 303 (361)
Q Consensus 300 aDri 303 (361)
|+++
T Consensus 192 ~~~~ 195 (198)
T TIGR01189 192 EARE 195 (198)
T ss_pred ceEE
Confidence 6776
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-32 Score=250.83 Aligned_cols=171 Identities=12% Similarity=0.095 Sum_probs=134.9
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|+.. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~v~~~g~~~~~-- 67 (204)
T PRK13538 1 MLEARNLACERDER---IL---FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-----PDAGEVLWQGEPIRR-- 67 (204)
T ss_pred CeEEEEEEEEECCE---EE---EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEccc--
Confidence 47899999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.. ...+..+++++|++.+++. ++.+|+.+...... ....+++.++++.+++.+
T Consensus 68 -------------~~-~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~~l~~~gl~~-------- 121 (204)
T PRK13538 68 -------------QR-DEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG----PGDDEALWEALAQVGLAG-------- 121 (204)
T ss_pred -------------ch-HHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC----ccHHHHHHHHHHHcCCHH--------
Confidence 00 0123346677777666654 88888876543111 123456778899999976
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
..++++.+||||||||++||||| ||||++||. +.|||++|| .++
T Consensus 122 ---------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i 192 (204)
T PRK13538 122 ---------FEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPV 192 (204)
T ss_pred ---------HhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhh
Confidence 45889999999999999999999 999999753 789999999 466
Q ss_pred ccccchh
Q 018083 297 LSLTDRA 303 (361)
Q Consensus 297 ~~~aDri 303 (361)
....+|+
T Consensus 193 ~~~~~~~ 199 (204)
T PRK13538 193 ASDKVRK 199 (204)
T ss_pred ccCCceE
Confidence 5666676
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-32 Score=248.44 Aligned_cols=169 Identities=12% Similarity=0.145 Sum_probs=134.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 ml~~~~l~~~~~~~---~i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~-- 67 (200)
T PRK13540 1 MLDVIELDFDYHDQ---PL---LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-----PEKGEILFERQSIKK-- 67 (200)
T ss_pred CEEEEEEEEEeCCe---eE---EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeeEEECCCcccc--
Confidence 47899999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.....+..++|++|++.+++. ++.+|+.++... .. ....+.++++.+++..
T Consensus 68 --------------~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~----~~--~~~~~~~~l~~~~l~~-------- 119 (200)
T PRK13540 68 --------------DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF----SP--GAVGITELCRLFSLEH-------- 119 (200)
T ss_pred --------------CHHHHHhheEEeccccccCcCCCHHHHHHHHHhc----Cc--chHHHHHHHHHcCCch--------
Confidence 011224467888888777654 888998865321 11 1245677888888876
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~ 297 (361)
.+++++.+||+||+||++||||| |||+++||. +.|||++|| ....
T Consensus 120 ---------~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 190 (200)
T PRK13540 120 ---------LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPL 190 (200)
T ss_pred ---------hhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhc
Confidence 34778899999999999999999 999999753 789999999 5555
Q ss_pred cccchh
Q 018083 298 SLTDRA 303 (361)
Q Consensus 298 ~~aDri 303 (361)
..||.-
T Consensus 191 ~~~d~~ 196 (200)
T PRK13540 191 NKADYE 196 (200)
T ss_pred cccchh
Confidence 668876
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-32 Score=311.65 Aligned_cols=213 Identities=13% Similarity=0.090 Sum_probs=166.6
Q ss_pred hhhhhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh
Q 018083 61 QRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 134 (361)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl 134 (361)
.+....|+.++++.+++.... ..+.++++|++++|++....++ |+|+||+|++|+.++|+||||||||||+
T Consensus 584 a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~v---L~~inl~i~~Ge~vaIvG~sGSGKSTLl 660 (1495)
T PLN03232 584 ANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPT---LSDINLEIPVGSLVAIVGGTGEGKTSLI 660 (1495)
T ss_pred HHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCce---eeeeEEEEcCCCEEEEECCCCCcHHHHH
Confidence 344455999999765432111 1235899999999975311245 6669999999999999999999999999
Q ss_pred hhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec
Q 018083 135 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 214 (361)
Q Consensus 135 ~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~ 214 (361)
++|.|.++ |++|.+. ..++.++||+|++.+|..||++||.++..
T Consensus 661 ~lLlG~~~-----~~~G~i~---------------------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~---- 704 (1495)
T PLN03232 661 SAMLGELS-----HAETSSV---------------------------VIRGSVAYVPQVSWIFNATVRENILFGSD---- 704 (1495)
T ss_pred HHHhCCCc-----ccCCCEE---------------------------EecCcEEEEcCccccccccHHHHhhcCCc----
Confidence 99999999 9988652 13456899999999999999999998753
Q ss_pred CCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-
Q 018083 215 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 284 (361)
Q Consensus 215 ~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~- 284 (361)
..+++..++++.+++.+++...++++.++|++. ...||||||||++||||+ |||+++||.
T Consensus 705 ----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~------G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~ 774 (1495)
T PLN03232 705 ----FESERYWRAIDVTALQHDLDLLPGRDLTEIGER------GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAH 774 (1495)
T ss_pred ----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCC------CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 123556667777787765555555555655553 457999999999999999 999999763
Q ss_pred ---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 285 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 285 ---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
++|+|+||| ......||+|+ +|++|++++.|+++++..
T Consensus 775 t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii-~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 775 VAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRII-LVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEE-EEeCCEEEEecCHHHHHh
Confidence 789999999 45667899995 699999999999988764
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-32 Score=244.59 Aligned_cols=152 Identities=14% Similarity=0.193 Sum_probs=119.7
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|+... .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 i~~~~~~~~~~~~~-~~~---l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~---- 67 (178)
T cd03247 1 LSINNVSFSYPEQE-QQV---LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-----PQQGEITLDGVPVS---- 67 (178)
T ss_pred CEEEEEEEEeCCCC-ccc---eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCEEHH----
Confidence 57899999997532 135 667999999999999999999999999999999999 99999999997653
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.. ....+..++|++|++.+++.++.+|+
T Consensus 68 -----------~~-~~~~~~~i~~~~q~~~~~~~tv~~~i---------------------------------------- 95 (178)
T cd03247 68 -----------DL-EKALSSLISVLNQRPYLFDTTLRNNL---------------------------------------- 95 (178)
T ss_pred -----------HH-HHHHHhhEEEEccCCeeecccHHHhh----------------------------------------
Confidence 11 11234456777877655433443332
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 299 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~~ 299 (361)
+.+|||||+||++||||| |||+++||. +.|||++|| +.+ ..
T Consensus 96 ------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~~ 162 (178)
T cd03247 96 ------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI-EH 162 (178)
T ss_pred ------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-Hh
Confidence 457999999999999999 999999752 789999999 444 56
Q ss_pred cchhhHhhhhhhhcCCC
Q 018083 300 TDRARIRTYLGELLGIP 316 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g 316 (361)
||+++ +|++|++++.|
T Consensus 163 ~d~~~-~l~~g~i~~~~ 178 (178)
T cd03247 163 MDKIL-FLENGKIIMQG 178 (178)
T ss_pred CCEEE-EEECCEEEecC
Confidence 99996 59999987653
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-32 Score=242.28 Aligned_cols=147 Identities=17% Similarity=0.211 Sum_probs=115.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|++++|++.. .++ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~-~~~---l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~---- 67 (173)
T cd03246 1 LEVENVSFRYPGAE-PPV---LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-----PTSGRVRLDGADIS---- 67 (173)
T ss_pred CEEEEEEEEcCCCC-Ccc---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEEcc----
Confidence 57899999997532 135 666999999999999999999999999999999999 99999999997764
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.......+..+++++|++.+++.++.+|+
T Consensus 68 -----------~~~~~~~~~~i~~~~q~~~~~~~tv~~~l---------------------------------------- 96 (173)
T cd03246 68 -----------QWDPNELGDHVGYLPQDDELFSGSIAENI---------------------------------------- 96 (173)
T ss_pred -----------cCCHHHHHhheEEECCCCccccCcHHHHC----------------------------------------
Confidence 11112234557777887654332322221
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-Cccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSL 299 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~~~ 299 (361)
|||||+||++||||| ||||++||. ++|||++|| .....+
T Consensus 97 ---------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 161 (173)
T cd03246 97 ---------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS 161 (173)
T ss_pred ---------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 999999999999999 999999753 789999999 233367
Q ss_pred cchhhHhhhhhhh
Q 018083 300 TDRARIRTYLGEL 312 (361)
Q Consensus 300 aDri~vvl~~G~i 312 (361)
||+++ +|++|++
T Consensus 162 ~d~v~-~l~~G~i 173 (173)
T cd03246 162 ADRIL-VLEDGRV 173 (173)
T ss_pred CCEEE-EEECCCC
Confidence 99996 5998874
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-32 Score=249.99 Aligned_cols=175 Identities=14% Similarity=0.086 Sum_probs=132.8
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
+.++++++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 23 l~~~~~~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~--- 88 (224)
T cd03220 23 LGILGRKGEVGEF---WA---LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-----PDSGTVTVRGRVSSL--- 88 (224)
T ss_pred hhhhhhhhhcCCe---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEchh---
Confidence 7889999999763 45 666999999999999999999999999999999999 999999999976530
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.. ....+.+ ..++.+|+.++.... .......++++.++++.+++.+
T Consensus 89 -----~~------------~~~~~~~------~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 134 (224)
T cd03220 89 -----LG------------LGGGFNP------ELTGRENIYLNGRLL-GLSRKEIDEKIDEIIEFSELGD---------- 134 (224)
T ss_pred -----hc------------ccccCCC------CCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh----------
Confidence 00 0001101 013444544332111 1122334456777888889977
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~~ 298 (361)
.+++++.+||||||||++||||| |||+++||. ++|||++|| +++..
T Consensus 135 -------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 135 -------FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207 (224)
T ss_pred -------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 35888999999999999999999 999999753 689999999 56778
Q ss_pred ccchhhHhhhhhhhcCCC
Q 018083 299 LTDRARIRTYLGELLGIP 316 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g 316 (361)
+||+++ +|++|+++..|
T Consensus 208 ~~d~i~-~l~~G~i~~~g 224 (224)
T cd03220 208 LCDRAL-VLEKGKIRFDG 224 (224)
T ss_pred hCCEEE-EEECCEEEecC
Confidence 999996 59999987654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-32 Score=288.61 Aligned_cols=197 Identities=17% Similarity=0.187 Sum_probs=158.3
Q ss_pred cccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++|+++|++++|+.+. ..++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~i~~ 74 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEV---LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK-----PTSGTYRVAGQDVAT 74 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcCc
Confidence 4799999999996421 1245 666999999999999999999999999999999999 999999999987651
Q ss_pred ceEeEeeeecCCCcceeeee----cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 163 TYFLQEYTIPRGSNSFSLYD----TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d----~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
....+ .+..+++++|++.+++. ++.+|+.++.... .....+.++++.++++.+++.+
T Consensus 75 ---------------~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~lgl~~-- 136 (648)
T PRK10535 75 ---------------LDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA-GLERKQRLLRAQELLQRLGLED-- 136 (648)
T ss_pred ---------------CCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChh--
Confidence 11111 13567888998887765 8888887643211 1223445667888999999987
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 292 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiT 292 (361)
..++.+.+||+||+||++||||| |||+++||. +.|+|++|
T Consensus 137 ---------------~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivs 201 (648)
T PRK10535 137 ---------------RVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVT 201 (648)
T ss_pred ---------------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 45889999999999999999999 999999753 79999999
Q ss_pred c-CccccccchhhHhhhhhhhcCCCCccccc
Q 018083 293 H-GDLLSLTDRARIRTYLGELLGIPPAKQIF 322 (361)
Q Consensus 293 H-~~~~~~aDri~vvl~~G~iv~~g~~~~i~ 322 (361)
| .+....|||++ +|++|++++.|++++..
T Consensus 202 H~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 202 HDPQVAAQAERVI-EIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCHHHHHhCCEEE-EEECCEEEeecCccccc
Confidence 9 34446799996 59999999999999886
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-32 Score=244.25 Aligned_cols=152 Identities=16% Similarity=0.214 Sum_probs=119.5
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++... .......+..
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~-------------~~~~~~~~~~ 69 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-----PQSGAVLIDGEPLDYS-------------RKGLLERRQR 69 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEECCEEcccc-------------ccchHHHHhh
Confidence 566999999999999999999999999999999999 9999999999876300 0011123445
Q ss_pred CcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhh
Q 018083 187 SDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 264 (361)
Q Consensus 187 i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGG 264 (361)
+++++|++. ++..++.+|+.++.... ..+.....+++.++++.+++.+ .+++++.+||||
T Consensus 70 i~~~~q~~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LS~G 131 (190)
T TIGR01166 70 VGLVFQDPDDQLFAADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASG-----------------LRERPTHCLSGG 131 (190)
T ss_pred EEEEecChhhccccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchh-----------------hhhCChhhCCHH
Confidence 788899873 44458889988753311 1222344567788899999987 458899999999
Q ss_pred hhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcC
Q 018083 265 KQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG 294 (361)
Q Consensus 265 qrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~ 294 (361)
||||++||||| ||||++||. ++|||++||+
T Consensus 132 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~ 186 (190)
T TIGR01166 132 EKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186 (190)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 99999999999 999999753 7899999993
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-33 Score=270.90 Aligned_cols=173 Identities=14% Similarity=0.199 Sum_probs=141.6
Q ss_pred EEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-H
Q 018083 122 LIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-W 200 (361)
Q Consensus 122 LvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-t 200 (361)
|+||||||||||+++|+|+++ |++|+|.++|+++.. .. ..+..++|++|++.+++. +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~i~g~~i~~---------------~~--~~~~~i~~v~q~~~l~~~~t 58 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-----PDSGSIMLDGEDVTN---------------VP--PHLRHINMVFQSYALFPHMT 58 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCC---------------CC--HHHCCEEEEecCccccCCCc
Confidence 689999999999999999999 999999999987641 11 123468899999888876 9
Q ss_pred HHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-----
Q 018083 201 IMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----- 275 (361)
Q Consensus 201 i~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----- 275 (361)
+.+|+.++.... ..+....++++.++++.+++.+ ++++++.+||||||||++|||||
T Consensus 59 v~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgGq~qRvalaraL~~~p~ 120 (325)
T TIGR01187 59 VEENVAFGLKMR-KVPRAEIKPRVLEALRLVQLEE-----------------FADRKPHQLSGGQQQRVALARALVFKPK 120 (325)
T ss_pred HHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCcc-----------------hhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 999999875421 1223344567888999999987 45899999999999999999999
Q ss_pred ----CCCceeecC-----------------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 276 ----NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 276 ----DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
|||+++||. ++|+|+||| +++..+|||++ +|++|++++.|++++++..|...++..
T Consensus 121 lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~-vl~~G~i~~~g~~~~~~~~~~~~~~~~ 199 (325)
T TIGR01187 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIA-IMRKGKIAQIGTPEEIYEEPANLFVAR 199 (325)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCcHHHHH
Confidence 999999753 789999999 57789999996 599999999999999998876655444
Q ss_pred hhh
Q 018083 333 ELI 335 (361)
Q Consensus 333 ~~~ 335 (361)
++.
T Consensus 200 ~~~ 202 (325)
T TIGR01187 200 FIG 202 (325)
T ss_pred hcC
Confidence 443
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-32 Score=241.88 Aligned_cols=145 Identities=15% Similarity=0.195 Sum_probs=115.9
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|++++|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (173)
T cd03230 1 IEVRNLSKRYGKK---TA---LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-----PDSGEIKVLGKDIKK--- 66 (173)
T ss_pred CEEEEEEEEECCe---ee---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEccc---
Confidence 4689999999753 45 666999999999999999999999999999999999 999999999977641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.. .+.+..++|++|++.+++. ++.+|+
T Consensus 67 ------------~~-~~~~~~i~~~~q~~~~~~~~tv~~~~--------------------------------------- 94 (173)
T cd03230 67 ------------EP-EEVKRRIGYLPEEPSLYENLTVRENL--------------------------------------- 94 (173)
T ss_pred ------------ch-HhhhccEEEEecCCccccCCcHHHHh---------------------------------------
Confidence 11 2234557788888655432 332221
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
. |||||+||++||||| ||||++||. |.|+|++|| ..+.
T Consensus 95 ----------~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 95 ----------K-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred ----------h-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 0 999999999999999 999999753 689999999 4566
Q ss_pred cccchhhHhhhhhhh
Q 018083 298 SLTDRARIRTYLGEL 312 (361)
Q Consensus 298 ~~aDri~vvl~~G~i 312 (361)
.+||+++ +|++|++
T Consensus 160 ~~~d~i~-~l~~g~i 173 (173)
T cd03230 160 RLCDRVA-ILNNGRI 173 (173)
T ss_pred HhCCEEE-EEeCCCC
Confidence 7899996 5998864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-32 Score=245.60 Aligned_cols=174 Identities=19% Similarity=0.185 Sum_probs=125.6
Q ss_pred cccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 86 TDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 86 lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++++||+++|++.. ...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~i---l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-----~~~G~i~~~g------ 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFT---LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-----KLSGSVSVPG------ 66 (204)
T ss_pred CEEeEEEEecCCCCccccce---eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCCeEEEcC------
Confidence 57899999997642 0135 666999999999999999999999999999999999 9999999987
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.++|++|++.+++.++.+|+.++... . . ++..++++.+++...+...+..
T Consensus 67 ----------------------~i~~~~q~~~l~~~t~~enl~~~~~~----~-~---~~~~~~~~~~~l~~~~~~~~~~ 116 (204)
T cd03250 67 ----------------------SIAYVSQEPWIQNGTIRENILFGKPF----D-E---ERYEKVIKACALEPDLEILPDG 116 (204)
T ss_pred ----------------------EEEEEecCchhccCcHHHHhccCCCc----C-H---HHHHHHHHHcCcHHHHHhccCc
Confidence 15566777777766899999875331 1 1 1122223333332211000000
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
-...+++.+.+||+|||||++||||| |||+++||. +.|||++|| ..
T Consensus 117 ------~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~ 190 (204)
T cd03250 117 ------DLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL 190 (204)
T ss_pred ------ccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH
Confidence 00023567889999999999999999 999999642 689999999 34
Q ss_pred cccccchhhHhhhhhh
Q 018083 296 LLSLTDRARIRTYLGE 311 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~ 311 (361)
+.. ||+++ +|++|+
T Consensus 191 ~~~-~d~i~-~l~~G~ 204 (204)
T cd03250 191 LPH-ADQIV-VLDNGR 204 (204)
T ss_pred Hhh-CCEEE-EEeCCC
Confidence 555 99996 588874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-32 Score=313.51 Aligned_cols=197 Identities=13% Similarity=0.094 Sum_probs=162.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.+.|+++||++.|+++. ..+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 926 ~~~L~I~nLsK~y~~~~-k~a---L~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~-----PtsG~I~i~G~dI~~ 996 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSG-RPA---VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP-----PTSGTVLVGGKDIET 996 (2272)
T ss_pred CceEEEEeEEEEecCCC-ceE---EEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC-----CCceEEEECCEECcc
Confidence 35799999999996322 256 555999999999999999999999999999999999 999999999988741
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.....+..+++++|+..+++. ++.+|+.+..... ..+.++.++++.++++.++|.+
T Consensus 997 ----------------~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk-g~~~~~~~~~v~~lL~~vgL~~------ 1053 (2272)
T TIGR01257 997 ----------------NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK-GRSWEEAQLEMEAMLEDTGLHH------ 1053 (2272)
T ss_pred ----------------hHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch------
Confidence 112235568889998877766 8999998754322 2233455677888999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| ||||++||+ |+|||++|| ++
T Consensus 1054 -----------~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmde 1122 (2272)
T TIGR01257 1054 -----------KRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDE 1122 (2272)
T ss_pred -----------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 45899999999999999999999 999999763 899999999 67
Q ss_pred cccccchhhHhhhhhhhcCCCCcccccc
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+..+||||+ +|++|+++..|++..+..
T Consensus 1123 a~~laDrI~-iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1123 ADLLGDRIA-IISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHhCCEEE-EEECCEEEEecCHHHHHH
Confidence 778999996 599999999999877644
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-32 Score=312.25 Aligned_cols=198 Identities=12% Similarity=0.080 Sum_probs=162.4
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
..+|+++||++.|+++. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 1935 ~~~L~v~nLsK~Y~~~~-~~a---L~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-----ptsG~I~i~G~~i~~ 2005 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTS-SPA---VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-----VTSGDATVAGKSILT 2005 (2272)
T ss_pred CceEEEEEEEEEECCCC-ceE---EEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECcc
Confidence 35799999999997532 246 556999999999999999999999999999999999 999999999988741
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
...+.+..++|++|+..++.. ++.+++.+.... ++.+.+..++.+.++++.++|.+
T Consensus 2006 ----------------~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l-~g~~~~~~~~~v~~lLe~lgL~~------ 2062 (2272)
T TIGR01257 2006 ----------------NISDVHQNMGYCPQFDAIDDLLTGREHLYLYARL-RGVPAEEIEKVANWSIQSLGLSL------ 2062 (2272)
T ss_pred ----------------hHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCHH------
Confidence 111234568889998777765 888888764322 12333445667788899999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
++++++.+||||||||++||+|| ||||++||+ |+|||++|| +
T Consensus 2063 -----------~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me 2131 (2272)
T TIGR01257 2063 -----------YADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME 2131 (2272)
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45899999999999999999999 999999763 899999999 6
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++..+|||+++ |++|+++..|+++++...
T Consensus 2132 e~e~lcDrV~I-L~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2132 ECEALCTRLAI-MVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhCCEEEE-EECCEEEEECCHHHHHHH
Confidence 88899999975 999999999999887443
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-32 Score=310.58 Aligned_cols=212 Identities=15% Similarity=0.097 Sum_probs=167.1
Q ss_pred hhhhhHHHHHHHHhHHHHHh--h----hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh
Q 018083 61 QRRRDAVFREVLQSYDQLRT--R----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 134 (361)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~--~----~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl 134 (361)
.+....|+.++++.++.... . ..+.++++|++++|++....++ |+|+||+|++|+.++|+||+|||||||+
T Consensus 584 a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~v---L~~inl~i~~Ge~vaIvG~sGSGKSTLl 660 (1622)
T PLN03130 584 ANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPT---LSNINLDVPVGSLVAIVGSTGEGKTSLI 660 (1622)
T ss_pred HHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCce---eeceeEEecCCCEEEEECCCCCCHHHHH
Confidence 33445599999965432111 1 1235999999999975321245 6669999999999999999999999999
Q ss_pred hhhhhhhccccccccc-ceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 135 NRISKVFENDKFASER-AQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 135 ~~I~gl~~~~~~~p~~-G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
++|.|.++ |++ |+|.+ ++.++||+|++.+|..||++||.++..
T Consensus 661 ~lLlG~~~-----~~~GG~I~l----------------------------~~~Iayv~Q~p~LfngTIreNI~fg~~--- 704 (1622)
T PLN03130 661 SAMLGELP-----PRSDASVVI----------------------------RGTVAYVPQVSWIFNATVRDNILFGSP--- 704 (1622)
T ss_pred HHHHHhhc-----cCCCceEEE----------------------------cCeEEEEcCccccCCCCHHHHHhCCCc---
Confidence 99999999 999 88864 235788999999999999999998754
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
..+++..++++.+++.+++...+++..++|++ ....||||||||++||||+ |||+++||.
T Consensus 705 -----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe------~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~ 773 (1622)
T PLN03130 705 -----FDPERYERAIDVTALQHDLDLLPGGDLTEIGE------RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA 773 (1622)
T ss_pred -----ccHHHHHHHHHHhCcHHHHHhCCCcccccccC------CCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCH
Confidence 12456677788888877665555666665555 3457999999999999999 999999763
Q ss_pred ----------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 285 ----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 285 ----------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
++|+|+||| ......||+|+ +|++|++++.|+++++..
T Consensus 774 ~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii-~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 774 HVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRII-LVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEE-EEeCCEEEEeCCHHHHHh
Confidence 789999999 45667899995 699999999999988864
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=274.88 Aligned_cols=194 Identities=13% Similarity=0.141 Sum_probs=143.1
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc-ccceeeeccccc
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVG 160 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p-~~G~I~i~G~~i 160 (361)
..++|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+.+ + ++|+|+++|+++
T Consensus 257 ~~~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-----~~~~G~i~~~g~~~ 325 (490)
T PRK10938 257 NEPRIVLNNGVVSYNDR---PI---LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP-----QGYSNDLTLFGRRR 325 (490)
T ss_pred CCceEEEeceEEEECCe---eE---EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----cccCCeEEEecccC
Confidence 34589999999999753 35 666999999999999999999999999999999876 5 699999999765
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH---HHHhccccceeEE---ecCCChhhhhhhcccccccCCC
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL---WIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~---ti~~ni~~~~~~~---~~~~~~~~~~~v~~~l~~~gl~ 234 (361)
.. .......+..+++++|++.++.. ++.+++.++.... ........++++.++++.+++.
T Consensus 326 ~~--------------~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 391 (490)
T PRK10938 326 GS--------------GETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGID 391 (490)
T ss_pred CC--------------CCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCc
Confidence 21 00111234568889998765432 4444443332100 0011123345678889999997
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------C-ccE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPV 288 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g-~tv 288 (361)
+. .+++++.+||||||||++||||| ||||++||. + .||
T Consensus 392 ~~----------------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tv 455 (490)
T PRK10938 392 KR----------------TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQL 455 (490)
T ss_pred hh----------------hccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEE
Confidence 52 23889999999999999999999 999999763 4 469
Q ss_pred EEEEc--Ccccc-ccchhhHhhhhhhhcCCCC
Q 018083 289 VVVTH--GDLLS-LTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 289 IiiTH--~~~~~-~aDri~vvl~~G~iv~~g~ 317 (361)
|++|| +++.. +||+++ +|++|+++..-.
T Consensus 456 iivsHd~~~~~~~~~d~v~-~l~~G~i~~~~~ 486 (490)
T PRK10938 456 LFVSHHAEDAPACITHRLE-FVPDGDIYRYVQ 486 (490)
T ss_pred EEEecchhhhhhhhheeEE-EecCCceEEeec
Confidence 99999 45665 589996 599999877543
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-32 Score=278.78 Aligned_cols=190 Identities=13% Similarity=0.061 Sum_probs=147.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.+++++++.. .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|+++...
T Consensus 257 ~l~~~~~~~~-------~~---l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~g~~~~~~- 320 (501)
T PRK11288 257 RLRLDGLKGP-------GL---REPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-----RTAGQVYLDGKPIDIR- 320 (501)
T ss_pred EEEEeccccC-------Cc---ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc-----CCCceEEECCEECCCC-
Confidence 5788888732 24 666999999999999999999999999999999999 9999999999876410
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchH---HHHH-HHHhccccceeEEe---c--CCChhhhhhhcccccccCCC-
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNIN---MIKL-WIMEGVRHGELVIR---R--SDSSSLRNRMRCKAHKIGCE- 234 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~---l~~~-ti~~ni~~~~~~~~---~--~~~~~~~~~v~~~l~~~gl~- 234 (361)
......+..++|++|++. +++. ++.+|+.++..... . ......++.+.++++.+++.
T Consensus 321 -------------~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 387 (501)
T PRK11288 321 -------------SPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT 387 (501)
T ss_pred -------------CHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc
Confidence 001122456788999864 5554 88899887542110 0 01222345677889999994
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
+ .+++++.+||||||||++||||| ||||++||. |.|||
T Consensus 388 ~-----------------~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi 450 (501)
T PRK11288 388 P-----------------SREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVL 450 (501)
T ss_pred C-----------------CccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEE
Confidence 4 34889999999999999999999 999999753 88999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
++|| +++..+||+++ +|++|++++.|+++++
T Consensus 451 ivsHd~~~~~~~~d~i~-~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 451 FVSSDLPEVLGVADRIV-VMREGRIAGELAREQA 483 (501)
T ss_pred EECCCHHHHHhhCCEEE-EEECCEEEEEEccccC
Confidence 9999 57889999996 5999999988877544
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-32 Score=249.27 Aligned_cols=168 Identities=16% Similarity=0.226 Sum_probs=132.9
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 191 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~ 191 (361)
|+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++. +.+..++|++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~--------------------~~~~~i~~v~ 55 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-----PAKGTVKVAGASPG--------------------KGWRHIGYVP 55 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCccch--------------------HhhCcEEEec
Confidence 6789999999999999999999999999999 99999999997642 1134567788
Q ss_pred cchHHH---HHHHHhccccceeEE-e--cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhh
Q 018083 192 DNINMI---KLWIMEGVRHGELVI-R--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 265 (361)
Q Consensus 192 q~~~l~---~~ti~~ni~~~~~~~-~--~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 265 (361)
|++.++ +.++.+|+.++.... . .......++++.++++.+++.+ ..++++.+|||||
T Consensus 56 q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LS~G~ 118 (223)
T TIGR03771 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE-----------------LADRPVGELSGGQ 118 (223)
T ss_pred ccccccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCch-----------------hhcCChhhCCHHH
Confidence 876542 236778877653211 0 0112233456788899999986 3488899999999
Q ss_pred hhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCc
Q 018083 266 QYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 266 rQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
|||++||||| ||||++||. +.|+|++|| +++..+||+++ ++ +|+++..|++
T Consensus 119 ~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~-~l-~G~i~~~~~~ 196 (223)
T TIGR03771 119 RQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVV-LL-NGRVIADGTP 196 (223)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE-EE-CCEEEeecCH
Confidence 9999999999 999999753 789999999 46778999996 48 7999999988
Q ss_pred ccccc
Q 018083 319 KQIFD 323 (361)
Q Consensus 319 ~~i~~ 323 (361)
+++..
T Consensus 197 ~~~~~ 201 (223)
T TIGR03771 197 QQLQD 201 (223)
T ss_pred HHhcC
Confidence 87755
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-32 Score=278.50 Aligned_cols=190 Identities=11% Similarity=0.044 Sum_probs=145.3
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++. + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 266 ~~~l~~~~l~~~--------~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~ 329 (510)
T PRK15439 266 APVLTVEDLTGE--------G---FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-----ARGGRIMLNGKEINA 329 (510)
T ss_pred CceEEEeCCCCC--------C---ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEECCC
Confidence 447999999831 2 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceeee-ecCCCCcccccchH---HHHH-HHHhccccceeE--EecCCChhhhhhhcccccccCCC-
Q 018083 163 TYFLQEYTIPRGSNSFSLY-DTRSLSDDASDNIN---MIKL-WIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCE- 234 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~-d~r~~i~~v~q~~~---l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~v~~~l~~~gl~- 234 (361)
.... ..+..++|++|++. +++. ++.+|+...... .........++++.++++.+++.
T Consensus 330 ---------------~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 394 (510)
T PRK15439 330 ---------------LSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF 394 (510)
T ss_pred ---------------CCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC
Confidence 0000 12345788888742 4444 677776432100 00011222345677889999996
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
. .+++++.+||||||||++||||| ||||++||. |.|||
T Consensus 395 ~-----------------~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiI 457 (510)
T PRK15439 395 N-----------------HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVL 457 (510)
T ss_pred C-----------------CccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEE
Confidence 4 34889999999999999999999 999999753 78999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
++|| +++..+|||++ +|++|+++..++++++
T Consensus 458 ivsHd~~~i~~~~d~i~-~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 458 FISSDLEEIEQMADRVL-VMHQGEISGALTGAAI 490 (510)
T ss_pred EECCCHHHHHHhCCEEE-EEECCEEEEEEccccC
Confidence 9999 57789999996 5999999988877554
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-31 Score=275.60 Aligned_cols=191 Identities=14% Similarity=0.149 Sum_probs=139.9
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|. ++ |+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 248 ~~~i~~~~l~~~~~-----~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 314 (491)
T PRK10982 248 EVILEVRNLTSLRQ-----PS---IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-----KSAGTITLHGKKINN 314 (491)
T ss_pred CcEEEEeCcccccC-----cc---cceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-----CCccEEEECCEECCC
Confidence 34799999999752 34 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceee-eecCCCCcccccchH---HHHH-HHHhc-----cccceeEEecCCChhhhhhhcccccccC
Q 018083 163 TYFLQEYTIPRGSNSFSL-YDTRSLSDDASDNIN---MIKL-WIMEG-----VRHGELVIRRSDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~-~d~r~~i~~v~q~~~---l~~~-ti~~n-----i~~~~~~~~~~~~~~~~~~v~~~l~~~g 232 (361)
... ...+..++|++|+.. +++. ++.+| +.+.............++.+.++++.++
T Consensus 315 ---------------~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (491)
T PRK10982 315 ---------------HNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMR 379 (491)
T ss_pred ---------------CCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcC
Confidence 000 011234666676642 2332 33333 3211110000122334456777888888
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------Ccc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKP 287 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~t 287 (361)
+... .+++++.+||||||||++||||| ||||++||. |.|
T Consensus 380 l~~~----------------~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~t 443 (491)
T PRK10982 380 VKTP----------------GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKG 443 (491)
T ss_pred ccCC----------------CcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCE
Confidence 8531 24889999999999999999999 999999763 899
Q ss_pred EEEEEc--CccccccchhhHhhhhhhhcCCCCc
Q 018083 288 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 288 vIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
||++|| +++..+|||++ +|++|+++..+++
T Consensus 444 vi~vsHd~~~~~~~~d~v~-~l~~g~i~~~~~~ 475 (491)
T PRK10982 444 IIIISSEMPELLGITDRIL-VMSNGLVAGIVDT 475 (491)
T ss_pred EEEECCChHHHHhhCCEEE-EEECCEEEEEEcc
Confidence 999999 57789999996 5999999865544
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-32 Score=244.51 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=124.1
Q ss_pred ccccccceeeecCcc---eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh--cccccccccceeeecccc
Q 018083 85 LTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSV 159 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~---~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~--~~~~~~p~~G~I~i~G~~ 159 (361)
.|+++|++++|+... ..++ |+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~---l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-----~~~G~i~~~g~~ 74 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQL---LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-----GVSGEVLINGRP 74 (194)
T ss_pred EEEEEeeEEEEecCCCcccccc---eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEe
Confidence 478999999997520 0245 66699999999999999999999999999999999 8 999999999987
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
+.. ...+..+++++|++.+++. ++.+|+.++.
T Consensus 75 ~~~------------------~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~----------------------------- 107 (194)
T cd03213 75 LDK------------------RSFRKIIGYVPQDDILHPTLTVRETLMFAA----------------------------- 107 (194)
T ss_pred Cch------------------HhhhheEEEccCcccCCCCCcHHHHHHHHH-----------------------------
Confidence 641 0234457788888766554 6655554210
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH 293 (361)
...+|||||+||++||||| |||+++||. ++|+|++||
T Consensus 108 ------------------~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 169 (194)
T cd03213 108 ------------------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169 (194)
T ss_pred ------------------HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 0017999999999999998 999999753 789999999
Q ss_pred C---ccccccchhhHhhhhhhhcCC
Q 018083 294 G---DLLSLTDRARIRTYLGELLGI 315 (361)
Q Consensus 294 ~---~~~~~aDri~vvl~~G~iv~~ 315 (361)
+ .+..+||+++ +|++|+++..
T Consensus 170 ~~~~~~~~~~d~v~-~l~~G~i~~~ 193 (194)
T cd03213 170 QPSSEIFELFDKLL-LLSQGRVIYF 193 (194)
T ss_pred CchHHHHHhcCEEE-EEeCCEEEec
Confidence 3 3568899996 5999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-31 Score=240.31 Aligned_cols=147 Identities=20% Similarity=0.234 Sum_probs=114.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|+.. ++ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~---~~---l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (178)
T cd03229 1 LELKNVSKRYGQK---TV---LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-----PDSGSILIDGEDLTD--- 66 (178)
T ss_pred CEEEEEEEEECCe---EE---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc---
Confidence 4689999999653 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCccee--eeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 166 LQEYTIPRGSNSFS--LYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 166 ~~~~~i~~~~~~~~--~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. ....+..+++++|++.+++. ++.+|+.+
T Consensus 67 ------------~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~----------------------------------- 99 (178)
T cd03229 67 ------------LEDELPPLRRRIGMVFQDFALFPHLTVLENIAL----------------------------------- 99 (178)
T ss_pred ------------cchhHHHHhhcEEEEecCCccCCCCCHHHheee-----------------------------------
Confidence 11 12234456777777654332 33222220
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
.||||||||++||||| |||+++||. +.|+|++|| .
T Consensus 100 -----------------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 100 -----------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred -----------------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 1999999999999999 999999752 589999999 4
Q ss_pred ccccccchhhHhhhhhh
Q 018083 295 DLLSLTDRARIRTYLGE 311 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~ 311 (361)
.+..+||+++ +|++|+
T Consensus 163 ~~~~~~d~i~-~l~~g~ 178 (178)
T cd03229 163 EAARLADRVV-VLRDGK 178 (178)
T ss_pred HHHHhcCEEE-EEeCCC
Confidence 6667899996 488774
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-31 Score=243.67 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=122.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhh--hcccccccccceeeecccccCcc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl--~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++++|++++|++. .+ |+++||+|.+|++++|+||||||||||+++|+|+ ++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-----p~~G~i~~~g~~~~~- 68 (200)
T cd03217 1 LEIKDLHVSVGGK---EI---LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE-----VTEGEILFKGEDITD- 68 (200)
T ss_pred CeEEEEEEEeCCE---Ee---eeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC-----CCccEEEECCEECCc-
Confidence 5689999999752 45 6669999999999999999999999999999999 46 899999999987651
Q ss_pred eEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
..... .+..++|++|++.+++. ++.+++
T Consensus 69 --------------~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l------------------------------------ 98 (200)
T cd03217 69 --------------LPPEERARLGIFLAFQYPPEIPGVKNADFL------------------------------------ 98 (200)
T ss_pred --------------CCHHHHhhCcEEEeecChhhccCccHHHHH------------------------------------
Confidence 11111 12347888888765432 221111
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
+..+.+|||||+||++||||| ||||++||. ++|||++|| +
T Consensus 99 -------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~ 165 (200)
T cd03217 99 -------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR 165 (200)
T ss_pred -------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 223458999999999999999 999999752 789999999 4
Q ss_pred cccc-ccchhhHhhhhhhhcCCCCc
Q 018083 295 DLLS-LTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 295 ~~~~-~aDri~vvl~~G~iv~~g~~ 318 (361)
.+.. +||+++ +|++|++++.|+.
T Consensus 166 ~~~~~~~d~i~-~l~~G~i~~~~~~ 189 (200)
T cd03217 166 LLDYIKPDRVH-VLYDGRIVKSGDK 189 (200)
T ss_pred HHHHhhCCEEE-EEECCEEEEEccH
Confidence 5555 799996 5999999988844
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-31 Score=245.15 Aligned_cols=169 Identities=14% Similarity=0.087 Sum_probs=129.6
Q ss_pred ccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+.++|++|.|+.+ ....+ |+++||+|++|++++|+||||||||||+++|+|++++.. |++|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--~~~G~i~i~g~~~~~- 76 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPI---LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNV--SVEGDIHYNGIPYKE- 76 (202)
T ss_pred eEEEEccEEEeccCCCCcee---eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCC--CcceEEEECCEECcc-
Confidence 57899999999753 12356 666999999999999999999999999999999987211 579999999987641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. ...+..++|++|+..+++. ++.+|+.+.... . .
T Consensus 77 --------------~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----------------~-------~----- 112 (202)
T cd03233 77 --------------FA-EKYPGEIIYVSEEDVHFPTLTVRETLDFALRC-----------------K-------G----- 112 (202)
T ss_pred --------------ch-hhhcceEEEEecccccCCCCcHHHHHhhhhhh-----------------c-------c-----
Confidence 11 1234567888888777665 888887643210 0 1
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc---
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--- 293 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--- 293 (361)
++++.+||+||+||++||||| |||+++||. +.|+|++||
T Consensus 113 ------------~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~ 180 (202)
T cd03233 113 ------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQAS 180 (202)
T ss_pred ------------ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCH
Confidence 566789999999999999999 999999753 456666655
Q ss_pred CccccccchhhHhhhhhhhcCCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g 316 (361)
+++..+||+++ +|++|+++..|
T Consensus 181 ~~~~~~~d~i~-~l~~G~i~~~g 202 (202)
T cd03233 181 DEIYDLFDKVL-VLYEGRQIYYG 202 (202)
T ss_pred HHHHHhCCeEE-EEECCEEEecC
Confidence 35678999996 59999987653
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-31 Score=240.72 Aligned_cols=148 Identities=14% Similarity=0.165 Sum_probs=117.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++| + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~-------~---l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~- 66 (182)
T cd03215 3 PVLEVRGLSVKG-------A---VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKPVTR- 66 (182)
T ss_pred cEEEEeccEEEe-------e---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCc-
Confidence 479999999998 2 777999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCccee-eeecCCCCcccccchH---HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 164 YFLQEYTIPRGSNSFS-LYDTRSLSDDASDNIN---MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~-~~d~r~~i~~v~q~~~---l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.. ....+..++|++|++. +++. ++.+|+.+.
T Consensus 67 --------------~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~------------------------------ 102 (182)
T cd03215 67 --------------RSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS------------------------------ 102 (182)
T ss_pred --------------cCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHH------------------------------
Confidence 11 0122445788888742 3322 444443310
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH 293 (361)
. .||+|||||++||||| |||+++||. +.|+|++||
T Consensus 103 ----------------~----~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 162 (182)
T cd03215 103 ----------------S----LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISS 162 (182)
T ss_pred ----------------h----hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 0 1999999999999999 999999753 789999999
Q ss_pred --CccccccchhhHhhhhhhh
Q 018083 294 --GDLLSLTDRARIRTYLGEL 312 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~i 312 (361)
.++.++||+++ +|++|++
T Consensus 163 ~~~~~~~~~d~v~-~l~~G~i 182 (182)
T cd03215 163 ELDELLGLCDRIL-VMYEGRI 182 (182)
T ss_pred CHHHHHHhCCEEE-EecCCcC
Confidence 46788999996 5999874
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-32 Score=266.05 Aligned_cols=201 Identities=10% Similarity=0.119 Sum_probs=169.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.+.+.+++|.|.+.. +. |+++||++++|+.++++||+|+||||++++|.++|+ +++|.|.+||++++
T Consensus 262 ~v~F~~V~F~y~~~r--~i---L~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD-----~~sG~I~id~qdir--- 328 (497)
T COG5265 262 AVAFINVSFAYDPRR--PI---LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD-----VNSGSITIDGQDIR--- 328 (497)
T ss_pred eEEEEEEEeeccccc--hh---hcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC-----CcCceEEEcchhHH---
Confidence 367899999998765 44 666999999999999999999999999999999999 99999999999997
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
....+..|+.+++|||+.-+|..++..|+.++-. ....+++..+++.+.+.+.+..-|.++
T Consensus 329 ------------~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-------~at~eev~aaa~~aqi~~fi~~lP~gy 389 (497)
T COG5265 329 ------------DVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-------DATAEEVGAAAEAAQIHDFIQSLPEGY 389 (497)
T ss_pred ------------HhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-------cccHHHHHHHHHHhhhhHHHHhCchhh
Confidence 4566677889999999999999999999997655 445567777888888877655555555
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Cccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 299 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~~~ 299 (361)
..-|.+..+ -||||||||+||||++ ||.||+||. |.|.|+|.| -.-.--
T Consensus 390 ~t~Vgergl------klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~ 463 (497)
T COG5265 390 DTGVGERGL------KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID 463 (497)
T ss_pred hcccchhee------eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC
Confidence 555555433 4999999999999998 999999752 899999999 344455
Q ss_pred cchhhHhhhhhhhcCCCCccccccC
Q 018083 300 TDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
||.|+ ||++|+|++.|+|++++..
T Consensus 464 adeii-vl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 464 ADEII-VLDNGRIVERGTHEELLAA 487 (497)
T ss_pred CceEE-EeeCCEEEecCcHHHHHHc
Confidence 99995 6999999999999999876
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-31 Score=244.81 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=128.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|+.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~-- 68 (207)
T PRK13539 2 MLEGEDLACVRGGR---VL---FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGDIDD-- 68 (207)
T ss_pred EEEEEeEEEEECCe---EE---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEeCcc--
Confidence 58999999999753 45 566999999999999999999999999999999999 999999999976430
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
. ..+..+++++|...+++. ++.+|+.+..... . ...+++.++++.+++.+
T Consensus 69 -------------~---~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~--~~~~~~~~~l~~~~l~~-------- 119 (207)
T PRK13539 69 -------------P---DVAEACHYLGHRNAMKPALTVAENLEFWAAFL---G--GEELDIAAALEAVGLAP-------- 119 (207)
T ss_pred -------------h---hhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---C--CcHHHHHHHHHHcCCHH--------
Confidence 0 023345666665544433 7778876532211 1 11245778899999976
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
+.++++.+||||||||++||||| ||||++||. +.|||++|| +++
T Consensus 120 ---------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 190 (207)
T PRK13539 120 ---------LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGL 190 (207)
T ss_pred ---------HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence 34788999999999999999999 999999753 899999999 334
Q ss_pred ccccchh
Q 018083 297 LSLTDRA 303 (361)
Q Consensus 297 ~~~aDri 303 (361)
.. |++
T Consensus 191 ~~--~~~ 195 (207)
T PRK13539 191 PG--ARE 195 (207)
T ss_pred cc--CcE
Confidence 33 877
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-31 Score=279.80 Aligned_cols=186 Identities=12% Similarity=0.088 Sum_probs=138.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++||+++|+++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++..
T Consensus 4 ~~~l~i~~l~~~y~~~--~~i---l~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-----p~~G~i~~~~~~--- 70 (556)
T PRK11819 4 QYIYTMNRVSKVVPPK--KQI---LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFEGEARPAPGI--- 70 (556)
T ss_pred cEEEEEeeEEEEeCCC--Cee---eeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCC---
Confidence 4589999999999722 245 666999999999999999999999999999999999 999999986421
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEE--------------ecC------------
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVI--------------RRS------------ 215 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~--------------~~~------------ 215 (361)
.++|++|++.+++. ++.+|+.++.... ...
T Consensus 71 -----------------------~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (556)
T PRK11819 71 -----------------------KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQG 127 (556)
T ss_pred -----------------------EEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 13344444433332 4455544331100 000
Q ss_pred ---------CChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CC
Q 018083 216 ---------DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 277 (361)
Q Consensus 216 ---------~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 277 (361)
...+..+++.++++.+++.. +++++.+||||||||++||||| ||
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------------------~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDE 189 (556)
T PRK11819 128 ELQEIIDAADAWDLDSQLEIAMDALRCPP------------------WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDE 189 (556)
T ss_pred HHHHHHHhcCccchHHHHHHHHHhCCCCc------------------ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 00112456777888888853 2788999999999999999999 99
Q ss_pred CceeecC-------------CccEEEEEc--CccccccchhhHhhhhhhhc-CCCCcccccc
Q 018083 278 PYLSFRD-------------DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQIFD 323 (361)
Q Consensus 278 Pt~~L~~-------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv-~~g~~~~i~~ 323 (361)
||++||. +.|||+||| +.+..+||+|+ +|++|+++ ..|+.+++..
T Consensus 190 Pt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~-~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 190 PTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWIL-ELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEE-EEeCCEEEEecCCHHHHHH
Confidence 9999874 569999999 56778999996 59999986 6787766543
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-31 Score=244.79 Aligned_cols=188 Identities=16% Similarity=0.216 Sum_probs=132.4
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
.+.|+.++|+... ++ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.....
T Consensus 2 ~~~~~~~~~~~~~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~- 70 (218)
T cd03290 2 QVTNGYFSWGSGL--AT---LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-----TLEGKVHWSNKNESEPSF- 70 (218)
T ss_pred eeeeeEEecCCCC--cc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCcccccccc-
Confidence 4678999997553 45 666999999999999999999999999999999999 999999999987641000
Q ss_pred EeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEE
Q 018083 167 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 246 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~ 246 (361)
.......+..++|++|++.++..++.+|+.+.... . .+++.++++.+++.+.+.. .-
T Consensus 71 ----------~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~----~----~~~~~~~~~~~~l~~~~~~----~~- 127 (218)
T cd03290 71 ----------EATRSRNRYSVAYAAQKPWLLNATVEENITFGSPF----N----KQRYKAVTDACSLQPDIDL----LP- 127 (218)
T ss_pred ----------cccchhhcceEEEEcCCCccccccHHHHHhhcCcC----C----HHHHHHHHHHhCcHHHHHh----Cc-
Confidence 00011234557889999887766899999864321 1 1122334455554331100 00
Q ss_pred EEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC------------------CccEEEEEc--Cccc
Q 018083 247 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 247 vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~------------------g~tvIiiTH--~~~~ 297 (361)
......++.++..||||||||++||||| ||||++||. +.|+|++|| ..+
T Consensus 128 -~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~- 205 (218)
T cd03290 128 -FGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL- 205 (218)
T ss_pred -CccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-
Confidence 0000013567889999999999999999 999999642 689999999 344
Q ss_pred cccchhhHhhhhhh
Q 018083 298 SLTDRARIRTYLGE 311 (361)
Q Consensus 298 ~~aDri~vvl~~G~ 311 (361)
..||+++ +|++|.
T Consensus 206 ~~~d~i~-~l~~G~ 218 (218)
T cd03290 206 PHADWII-AMKDGS 218 (218)
T ss_pred hhCCEEE-EecCCC
Confidence 5799995 588763
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-32 Score=279.23 Aligned_cols=185 Identities=13% Similarity=0.133 Sum_probs=134.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|... .++
T Consensus 1 ml~i~~ls~~~~~~---~i---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~~-i~~ 68 (530)
T PRK15064 1 MLSTANITMQFGAK---PL---FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-----PSAGNVSLDPNER-LGK 68 (530)
T ss_pred CEEEEEEEEEeCCc---Ee---EeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCCE-EEE
Confidence 47899999999753 45 666999999999999999999999999999999999 9999999987321 122
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhcccccee----------------EE---------------
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGEL----------------VI--------------- 212 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~----------------~~--------------- 212 (361)
.+| ++.++.. ++.+++.++.. ..
T Consensus 69 ~~q-------------------------~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (530)
T PRK15064 69 LRQ-------------------------DQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKF 123 (530)
T ss_pred Eec-------------------------cCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 222 1111111 22222211100 00
Q ss_pred ecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec
Q 018083 213 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 283 (361)
Q Consensus 213 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~ 283 (361)
......+.++++.++++.+++.+. ..++++.+||||||||++||||| ||||++||
T Consensus 124 ~~~~~~~~~~~~~~~l~~~gl~~~----------------~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD 187 (530)
T PRK15064 124 AEMDGYTAEARAGELLLGVGIPEE----------------QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD 187 (530)
T ss_pred HhcCchhHHHHHHHHHHhCCCChh----------------HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccC
Confidence 000011234567788999999752 12467899999999999999999 99999986
Q ss_pred C-------------CccEEEEEc--CccccccchhhHhhhhhhh-cCCCCcccccc
Q 018083 284 D-------------DKPVVVVTH--GDLLSLTDRARIRTYLGEL-LGIPPAKQIFD 323 (361)
Q Consensus 284 ~-------------g~tvIiiTH--~~~~~~aDri~vvl~~G~i-v~~g~~~~i~~ 323 (361)
. +.|||+||| +.+..+||+++ +|++|++ +..|+++++..
T Consensus 188 ~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~-~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 188 INTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMA-DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEE-EEeCCEEEEecCCHHHHHH
Confidence 4 889999999 56779999996 5999999 47888877654
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-31 Score=274.48 Aligned_cols=189 Identities=16% Similarity=0.160 Sum_probs=143.4
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++++++||++.|+.+....+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 18 ~~~mL~lknL~~~~~~~~~~~I---L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~-----P~sGeI~I~G~~~~ 89 (549)
T PRK13545 18 NKPFDKLKDLFFRSKDGEYHYA---LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM-----PNKGTVDIKGSAAL 89 (549)
T ss_pred ccceeEEEEEEEecCCCccceE---EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeee
Confidence 3457899999999976432246 666999999999999999999999999999999999 99999999986421
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
+. + . ..+.++ .++.+|+.+..... ..+..+..+++.++++.+++.+
T Consensus 90 ---------i~-----~---~----~~l~~~------lTV~EnL~l~~~~~-~~~~~e~~e~i~elLe~lgL~~------ 135 (549)
T PRK13545 90 ---------IA-----I---S----SGLNGQ------LTGIENIELKGLMM-GLTKEKIKEIIPEIIEFADIGK------ 135 (549)
T ss_pred ---------EE-----e---c----cccCCC------CcHHHHHHhhhhhc-CCCHHHHHHHHHHHHHHcCChh------
Confidence 00 0 0 000010 14555554422111 1223344456677889999977
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
.+++++.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 136 -----------~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~ 204 (549)
T PRK13545 136 -----------FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204 (549)
T ss_pred -----------HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 45889999999999999999999 999999753 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
.+..+||+++ +|++|+++..|++++++..
T Consensus 205 ~i~~l~DrIi-vL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 205 QVKSFCTKAL-WLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHHHhh
Confidence 6778999996 5999999999998877654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-31 Score=276.21 Aligned_cols=181 Identities=11% Similarity=0.111 Sum_probs=139.2
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 318 ~~l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~~---- 382 (530)
T PRK15064 318 NALEVENLTKGFDNG---PL---FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-----PDSGTVKWSENA---- 382 (530)
T ss_pred ceEEEEeeEEeeCCc---ee---ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCce----
Confidence 479999999999753 45 666999999999999999999999999999999999 999999987632
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH--HHH-HHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.++|++|++. ++. .++.+++.+.. .....++++.++++.+++...
T Consensus 383 ----------------------~i~~~~q~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~~~~l~~~~l~~~---- 430 (530)
T PRK15064 383 ----------------------NIGYYAQDHAYDFENDLTLFDWMSQWR------QEGDDEQAVRGTLGRLLFSQD---- 430 (530)
T ss_pred ----------------------EEEEEcccccccCCCCCcHHHHHHHhc------cCCccHHHHHHHHHHcCCChh----
Confidence 1333444332 111 14445543210 011224567788999998521
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Ccc
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDL 296 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. +.|||+||| +.+
T Consensus 431 ------------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~ 498 (530)
T PRK15064 431 ------------DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFV 498 (530)
T ss_pred ------------HhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 35889999999999999999999 999999864 569999999 567
Q ss_pred ccccchhhHhhhhhhhc-CCCCccccccC
Q 018083 297 LSLTDRARIRTYLGELL-GIPPAKQIFDI 324 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv-~~g~~~~i~~~ 324 (361)
..+|||++ +|++|+++ ..|++.++++.
T Consensus 499 ~~~~d~i~-~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 499 SSLATRII-EITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHhCCEEE-EEECCeEEEcCCCHHHHHHH
Confidence 78999996 59999998 78888776543
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-31 Score=241.81 Aligned_cols=160 Identities=15% Similarity=0.119 Sum_probs=124.3
Q ss_pred cccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.+|+++|+++.|++.. ..++ |+++||+|++|++++|+||||||||||+++|+|++... |++|+|.++|+++.
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~~- 74 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQL---LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLD- 74 (192)
T ss_pred cEEEEeeeEEEecCCCCceEe---EEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEehH-
Confidence 3689999999997421 0245 66699999999999999999999999999999986210 78999999997652
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
...+..+++++|++.+++. ++.+|+.++..
T Consensus 75 ------------------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~------------------------------- 105 (192)
T cd03232 75 ------------------KNFQRSTGYVEQQDVHSPNLTVREALRFSAL------------------------------- 105 (192)
T ss_pred ------------------HHhhhceEEecccCccccCCcHHHHHHHHHH-------------------------------
Confidence 1123456778888766664 77777653110
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcC--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG-- 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~-- 294 (361)
.+ +|||||+||++||||| |||+++||. ++|||++||+
T Consensus 106 ------------~~----~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 106 ------------LR----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred ------------Hh----cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 01 7999999999999999 999999753 7899999993
Q ss_pred -ccccccchhhHhhhh-hhhcCCC
Q 018083 295 -DLLSLTDRARIRTYL-GELLGIP 316 (361)
Q Consensus 295 -~~~~~aDri~vvl~~-G~iv~~g 316 (361)
.+..+||+++ +|++ |++++.|
T Consensus 170 ~~~~~~~d~i~-~l~~~g~i~~~g 192 (192)
T cd03232 170 ASIFEKFDRLL-LLKRGGKTVYFG 192 (192)
T ss_pred HHHHhhCCEEE-EEcCCCeEEeCC
Confidence 2578899996 5998 9998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-31 Score=236.13 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=112.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|++.. ..+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~-~~~---l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-----~~~G~i~~~g~~~~---- 67 (171)
T cd03228 1 IEFKNVSFSYPGRP-KPV---LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-----PTSGEILIDGVDLR---- 67 (171)
T ss_pred CEEEEEEEEcCCCC-ccc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhh----
Confidence 57899999997642 135 666999999999999999999999999999999999 99999999997654
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.......+..+++++|++.++..++.+|+
T Consensus 68 -----------~~~~~~~~~~i~~~~~~~~~~~~t~~e~l---------------------------------------- 96 (171)
T cd03228 68 -----------DLDLESLRKNIAYVPQDPFLFSGTIRENI---------------------------------------- 96 (171)
T ss_pred -----------hcCHHHHHhhEEEEcCCchhccchHHHHh----------------------------------------
Confidence 11111223456677777644332322211
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 299 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~~ 299 (361)
||+|||||++||||| ||||++||. ++|||++|| +++..
T Consensus 97 ---------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~- 160 (171)
T cd03228 97 ---------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD- 160 (171)
T ss_pred ---------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-
Confidence 999999999999999 999999753 789999999 45555
Q ss_pred cchhhHhhhhhh
Q 018083 300 TDRARIRTYLGE 311 (361)
Q Consensus 300 aDri~vvl~~G~ 311 (361)
||+++ +|++|+
T Consensus 161 ~d~~~-~l~~g~ 171 (171)
T cd03228 161 ADRII-VLDDGR 171 (171)
T ss_pred CCEEE-EEcCCC
Confidence 99996 588874
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-31 Score=254.75 Aligned_cols=202 Identities=17% Similarity=0.096 Sum_probs=142.0
Q ss_pred HHHHHHHhHHHHHhh-----hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 67 VFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 67 ~~~~~l~~~~~~~~~-----~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++++++..++.... ..+.|+++|+++. .. .+ |+++||+|++|++++|+||||||||||+++|+|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~nls~~--~~---~v---L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 16 GFGELLEKAKQENNDRKHSSDDNNLFFSNLCLV--GA---PV---LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred HHHHHHhcccccccccccCCCCCeEEEEEEEEe--cc---cc---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 688888876653322 3457999999985 21 35 66699999999999999999999999999999999
Q ss_pred cccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhh
Q 018083 142 ENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLR 221 (361)
Q Consensus 142 ~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~ 221 (361)
+ |++|+|.++|. ++|++|++.+++.++.+|+.++... . .
T Consensus 88 ~-----p~~G~I~i~g~----------------------------i~yv~q~~~l~~~tv~enl~~~~~~----~-~--- 126 (282)
T cd03291 88 E-----PSEGKIKHSGR----------------------------ISFSSQFSWIMPGTIKENIIFGVSY----D-E--- 126 (282)
T ss_pred C-----CCCcEEEECCE----------------------------EEEEeCcccccccCHHHHhhccccc----C-H---
Confidence 9 99999998761 3444555555555777887754321 0 1
Q ss_pred hhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--------
Q 018083 222 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------- 284 (361)
Q Consensus 222 ~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------- 284 (361)
.++.++++.+++.+.+........ ...++.+.+||||||||++||||| |||+++||.
T Consensus 127 ~~~~~~l~~~~l~~~l~~~~~~~~------~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~ 200 (282)
T cd03291 127 YRYKSVVKACQLEEDITKFPEKDN------TVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFE 200 (282)
T ss_pred HHHHHHHHHhCCHHHHHhcccccc------ceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH
Confidence 112222333333321100000000 012445689999999999999999 999999653
Q ss_pred --------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 --------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 --------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+.|||++|| ......||+++ +|++|+++..|+++++...
T Consensus 201 ~ll~~~~~~~tIiiisH~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 201 SCVCKLMANKTRILVTSKMEHLKKADKIL-ILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred HHHHHhhCCCEEEEEeCChHHHHhCCEEE-EEECCEEEEECCHHHHHhc
Confidence 789999999 22335799996 5999999999998887643
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-31 Score=281.94 Aligned_cols=193 Identities=12% Similarity=0.068 Sum_probs=150.8
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc--cceeeecccccCcce
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--RAQVTYNSSVGDGTY 164 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~--~G~I~i~G~~i~~~~ 164 (361)
.+++++++|+++ ++ |+++|++|++||++||+||||||||||+++|+|+.+ |+ +|+|.++|+++..
T Consensus 70 ~~~~l~~~~~~~---~i---L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~-----~~~~sG~I~inG~~~~~-- 136 (659)
T PLN03211 70 KISDETRQIQER---TI---LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ-----GNNFTGTILANNRKPTK-- 136 (659)
T ss_pred ccccccccCCCC---ee---eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEEEECCEECch--
Confidence 467788899753 45 666999999999999999999999999999999998 64 8999999977530
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe--cCCChhhhhhhcccccccCCCcceeEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~--~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
..+..++||+|+..+++. ++.+++.+...... ....++.++++.++++.+||.+...
T Consensus 137 -----------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--- 196 (659)
T PLN03211 137 -----------------QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN--- 196 (659)
T ss_pred -----------------hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcC---
Confidence 122357899999888766 99999987643211 1122344566788999999975110
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
. .+.++.+.+||||||||++||||| ||||++||. |+|||++|| .
T Consensus 197 ----t-----~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~ 267 (659)
T PLN03211 197 ----T-----IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267 (659)
T ss_pred ----c-----eeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Confidence 0 012456788999999999999999 999999753 899999999 3
Q ss_pred -ccccccchhhHhhhhhhhcCCCCccccc
Q 018083 295 -DLLSLTDRARIRTYLGELLGIPPAKQIF 322 (361)
Q Consensus 295 -~~~~~aDri~vvl~~G~iv~~g~~~~i~ 322 (361)
.+.++||+++ +|++|+++..|+++++.
T Consensus 268 ~~i~~~~D~ii-lL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 268 SRVYQMFDSVL-VLSEGRCLFFGKGSDAM 295 (659)
T ss_pred HHHHHhhceEE-EecCCcEEEECCHHHHH
Confidence 3678999996 59999999999998774
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-31 Score=276.44 Aligned_cols=185 Identities=13% Similarity=0.091 Sum_probs=136.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+++++|++++|+++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 3 ~~i~~~nls~~~~~~~--~i---l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~----- 67 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKK--EI---LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFNGEARPAPG----- 67 (552)
T ss_pred EEEEEeeEEEecCCCC--ee---ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC-----
Confidence 4799999999997322 45 666999999999999999999999999999999999 99999998641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe-------------cCCChh----------
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-------------RSDSSS---------- 219 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~-------------~~~~~~---------- 219 (361)
..++|++|++.+++. ++.+|+.++..... .....+
T Consensus 68 ---------------------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (552)
T TIGR03719 68 ---------------------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAE 126 (552)
T ss_pred ---------------------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 113445555544433 55566554321000 000010
Q ss_pred ------------hhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCC
Q 018083 220 ------------LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 278 (361)
Q Consensus 220 ------------~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEP 278 (361)
...++.++++.+++.. +++++.+||||||||++||||| |||
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEP 188 (552)
T TIGR03719 127 LQEIIDAADAWDLDRKLEIAMDALRCPP------------------WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188 (552)
T ss_pred HHHHHHhcCcchhHHHHHHHHhhCCCCc------------------ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1234455666677743 2778999999999999999999 999
Q ss_pred ceeecC-------------CccEEEEEc--CccccccchhhHhhhhhhhc-CCCCcccccc
Q 018083 279 YLSFRD-------------DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQIFD 323 (361)
Q Consensus 279 t~~L~~-------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv-~~g~~~~i~~ 323 (361)
|++||. +.|||+||| +.+..+||+++ +|++|+++ ..|+.+++..
T Consensus 189 t~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~-~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 189 TNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWIL-ELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEE-EEECCEEEEecCCHHHHHH
Confidence 999864 579999999 56778999996 59999975 6788776554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-30 Score=236.98 Aligned_cols=165 Identities=11% Similarity=0.124 Sum_probs=126.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. . +.++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~----~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~-- 66 (195)
T PRK13541 1 MLSLHQLQFNIEQK----N---LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ-----PSSGNIYYKNCNINN-- 66 (195)
T ss_pred CeEEEEeeEEECCc----E---EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCcccCh--
Confidence 47899999999652 2 334999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHH-HHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.. ...+++++|++.++. .++.+|+.+..... ...+++.++++.+++.+
T Consensus 67 -------------~~----~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~------~~~~~~~~~l~~~~l~~-------- 115 (195)
T PRK13541 67 -------------IA----KPYCTYIGHNLGLKLEMTVFENLKFWSEIY------NSAETLYAAIHYFKLHD-------- 115 (195)
T ss_pred -------------hh----hhhEEeccCCcCCCccCCHHHHHHHHHHhc------ccHHHHHHHHHHcCCHh--------
Confidence 00 112455666554333 37788887543211 12345667788888876
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~ 297 (361)
.+++.+.+||||||||++||||| |||+++||. +.|+|++|| ....
T Consensus 116 ---------~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i 186 (195)
T PRK13541 116 ---------LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSI 186 (195)
T ss_pred ---------hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcccc
Confidence 34888999999999999999999 999999753 799999999 4444
Q ss_pred cccchh
Q 018083 298 SLTDRA 303 (361)
Q Consensus 298 ~~aDri 303 (361)
..||-+
T Consensus 187 ~~~~~~ 192 (195)
T PRK13541 187 KSAQIL 192 (195)
T ss_pred chhhee
Confidence 557765
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-31 Score=253.00 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=124.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|... +..+ ..
T Consensus 40 l~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-----p~~G~I~~~g~~~---~~~~--------------~~--- 94 (264)
T PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS-----PTVGKVDRNGEVS---VIAI--------------SA--- 94 (264)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEe---EEec--------------cc---
Confidence 566999999999999999999999999999999999 9999999998421 0000 00
Q ss_pred CcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhh
Q 018083 187 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 266 (361)
Q Consensus 187 i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 266 (361)
++.++ .++.+|+.++.... ..+.....+.+..+++.+++.+ .+++.+.+|||||+
T Consensus 95 -~~~~~------~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LS~Gq~ 149 (264)
T PRK13546 95 -GLSGQ------LTGIENIEFKMLCM-GFKRKEIKAMTPKIIEFSELGE-----------------FIYQPVKKYSSGMR 149 (264)
T ss_pred -CCCCC------CcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-----------------hhcCCcccCCHHHH
Confidence 00000 12334443321110 1122334445566777888876 44888999999999
Q ss_pred hhhhhhhcc---------CCCceeecC----------------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCcc
Q 018083 267 YNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAK 319 (361)
Q Consensus 267 QRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~ 319 (361)
||++||||| |||+++||. +.|||++|| ..+..+||+++ +|++|+++..|+++
T Consensus 150 qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~-~l~~G~i~~~g~~~ 228 (264)
T PRK13546 150 AKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIA-WIEGGKLKDYGELD 228 (264)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEE-EEECCEEEEeCCHH
Confidence 999999999 999999753 789999999 46678899996 59999999999888
Q ss_pred ccccC
Q 018083 320 QIFDI 324 (361)
Q Consensus 320 ~i~~~ 324 (361)
+++..
T Consensus 229 ~~~~~ 233 (264)
T PRK13546 229 DVLPK 233 (264)
T ss_pred HHHHH
Confidence 77653
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-30 Score=275.10 Aligned_cols=180 Identities=13% Similarity=0.052 Sum_probs=135.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|+++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 450 ~~i~~~nv~~~~~~~~--~i---l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-----~~~G~i~~~~------ 513 (659)
T TIGR00954 450 NGIKFENIPLVTPNGD--VL---IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-----VYGGRLTKPA------ 513 (659)
T ss_pred CeEEEEeeEEECCCCC--ee---eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEeecC------
Confidence 4689999999996442 45 666999999999999999999999999999999999 9999987642
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
+..+++++|++.+++.++.+|+.++.............+++.++++.+++.+.+.+ ...
T Consensus 514 --------------------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g 572 (659)
T TIGR00954 514 --------------------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGG 572 (659)
T ss_pred --------------------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCC
Confidence 23477889998887779999998764321110112234567788888998763210 111
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc-Ccccccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLT 300 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH-~~~~~~a 300 (361)
+.++ ...+.+||||||||++||||| ||||++||. ++|+|+||| ....+.|
T Consensus 573 ~~~~-------~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 573 WSAV-------QDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYH 645 (659)
T ss_pred cccc-------cccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhC
Confidence 1110 112478999999999999999 999999863 889999999 4556889
Q ss_pred chhhHhhh
Q 018083 301 DRARIRTY 308 (361)
Q Consensus 301 Dri~vvl~ 308 (361)
|+++ +|+
T Consensus 646 d~il-~l~ 652 (659)
T TIGR00954 646 EYLL-YMD 652 (659)
T ss_pred CEEE-EEe
Confidence 9995 475
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-30 Score=230.42 Aligned_cols=140 Identities=16% Similarity=0.124 Sum_probs=112.3
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|+++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 i~~~~~~~~~~~~~--~~---l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~------- 63 (166)
T cd03223 1 IELENLSLATPDGR--VL---LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-----WGSGRIGMPEG------- 63 (166)
T ss_pred CEEEEEEEEcCCCC--ee---eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCC-------
Confidence 46899999996432 35 666999999999999999999999999999999999 99999998762
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
..++|++|++.++..++.+|+.++
T Consensus 64 -------------------~~i~~~~q~~~~~~~tv~~nl~~~------------------------------------- 87 (166)
T cd03223 64 -------------------EDLLFLPQRPYLPLGTLREQLIYP------------------------------------- 87 (166)
T ss_pred -------------------ceEEEECCCCccccccHHHHhhcc-------------------------------------
Confidence 234556666554444666666531
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc-Cccccccch
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLTDR 302 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH-~~~~~~aDr 302 (361)
.+.+||||||||++||||| |||+++||. +.|+|++|| .....+||+
T Consensus 88 -----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~ 156 (166)
T cd03223 88 -----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDR 156 (166)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCE
Confidence 1357999999999999999 999999863 789999999 344578999
Q ss_pred hhHhhhhh
Q 018083 303 ARIRTYLG 310 (361)
Q Consensus 303 i~vvl~~G 310 (361)
++ +|+++
T Consensus 157 i~-~l~~~ 163 (166)
T cd03223 157 VL-DLDGE 163 (166)
T ss_pred EE-EEcCC
Confidence 96 47654
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-30 Score=229.56 Aligned_cols=135 Identities=16% Similarity=0.239 Sum_probs=106.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~v---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~--- 66 (163)
T cd03216 1 LELRGITKRFGGV---KA---LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK-----PDSGEILVDGKEVSF--- 66 (163)
T ss_pred CEEEEEEEEECCe---EE---EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECCc---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999876530
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.... ...+. .+++
T Consensus 67 ------------~~~~------------------------------------~~~~~-------~i~~------------ 79 (163)
T cd03216 67 ------------ASPR------------------------------------DARRA-------GIAM------------ 79 (163)
T ss_pred ------------CCHH------------------------------------HHHhc-------CeEE------------
Confidence 0000 00000 0111
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~~ 298 (361)
..+|||||+||++||||| |||+++||. +.|+|++|| .++..
T Consensus 80 ------------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 80 ------------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred ------------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 012999999999999999 999999753 789999999 45778
Q ss_pred ccchhhHhhhhhhhcC
Q 018083 299 LTDRARIRTYLGELLG 314 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~ 314 (361)
+||+++ +|++|++++
T Consensus 148 ~~d~~~-~l~~g~i~~ 162 (163)
T cd03216 148 IADRVT-VLRDGRVVG 162 (163)
T ss_pred hCCEEE-EEECCEEEe
Confidence 899996 599998864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-30 Score=245.79 Aligned_cols=186 Identities=17% Similarity=0.165 Sum_probs=131.9
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee-----------ecc
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 157 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~-----------i~G 157 (361)
.+|+++|+++. .+ |+++|+ |++|++++|+||||||||||+++|+|+++ |++|+|+ ++|
T Consensus 4 ~~~~~~y~~~~--~~---l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~~~~~~~~~~~~g 72 (255)
T cd03236 4 DEPVHRYGPNS--FK---LHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK-----PNLGKFDDPPDWDEILDEFRG 72 (255)
T ss_pred cCcceeecCcc--hh---hhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEeeccccchhhhhccC
Confidence 47899997542 46 555995 99999999999999999999999999999 9999996 556
Q ss_pred cccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 158 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 158 ~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
.++... . ...... ...+++++|++..++.++.+++.+... ....++.+.++++.+++.+
T Consensus 73 ~~~~~~-~-----------~~~~~~-~~~i~~~~~~~~~~~~~~~~~i~~~l~------~~~~~~~~~~~l~~~gl~~-- 131 (255)
T cd03236 73 SELQNY-F-----------TKLLEG-DVKVIVKPQYVDLIPKAVKGKVGELLK------KKDERGKLDELVDQLELRH-- 131 (255)
T ss_pred chhhhh-h-----------HHhhhc-ccceeeecchhccCchHHHHHHHHHhc------hhHHHHHHHHHHHHcCCch--
Confidence 554310 0 000000 011344555544444333444443211 1233466778899999987
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 292 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiT 292 (361)
..++.+.+||+|||||++||||| ||||++||. ++|||++|
T Consensus 132 ---------------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiS 196 (255)
T cd03236 132 ---------------VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVE 196 (255)
T ss_pred ---------------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 34888999999999999999999 999999753 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
| ..+..+||+++ +| +|++.+.| ++..|.+
T Consensus 197 Hd~~~~~~~ad~i~-~l-~~~~~~~~----~~~~~~~ 227 (255)
T cd03236 197 HDLAVLDYLSDYIH-CL-YGEPGAYG----VVTLPKS 227 (255)
T ss_pred CCHHHHHHhCCEEE-EE-CCCCCcce----eeecCcc
Confidence 9 46677899995 47 57776654 5555554
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-30 Score=237.80 Aligned_cols=193 Identities=13% Similarity=0.117 Sum_probs=151.3
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|+++.|+++ ++ |+++|++|++||.++|+||||||||||+++++|-+. |++|.+.+.|+..-
T Consensus 28 ~~~li~l~~v~v~r~gk---~i---L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-----pssg~~~~~G~~~G 96 (257)
T COG1119 28 NEPLIELKNVSVRRNGK---KI---LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-----PSSGDVTLLGRRFG 96 (257)
T ss_pred CcceEEecceEEEECCE---ee---ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-----CCCCceeeeeeecc
Confidence 44679999999999874 45 666999999999999999999999999999999999 99999999997753
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHH-HHHhccccceeEEec----CCChhhhhhhcccccccCCC
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELVIRR----SDSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~----~~~~~~~~~v~~~l~~~gl~ 234 (361)
. .... ++.|+.||+|.-... +.+. ++.+-|..|.-..-. ...+...+++..+++.+|+.
T Consensus 97 ~-------------~~~~-~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~ 162 (257)
T COG1119 97 K-------------GETI-FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK 162 (257)
T ss_pred C-------------Ccch-HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchh
Confidence 1 0122 778888998743322 1222 555555544432111 12345567788899999998
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC------------------Ccc
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKP 287 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~------------------g~t 287 (361)
+ +++++..+||-|||||+.||||| |||+.|||. +.+
T Consensus 163 ~-----------------la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ 225 (257)
T COG1119 163 H-----------------LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPA 225 (257)
T ss_pred h-----------------hccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCce
Confidence 8 56999999999999999999999 999999752 788
Q ss_pred EEEEEc--CccccccchhhHhhhhhhhcCCCC
Q 018083 288 VVVVTH--GDLLSLTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 288 vIiiTH--~~~~~~aDri~vvl~~G~iv~~g~ 317 (361)
+|+||| +++....++++ .+++|+++..|.
T Consensus 226 ll~VtHh~eEi~~~~th~l-ll~~g~v~~~g~ 256 (257)
T COG1119 226 LLFVTHHAEEIPPCFTHRL-LLKEGEVVAQGK 256 (257)
T ss_pred EEEEEcchhhcccccceEE-EeeCCceeeccc
Confidence 999999 67877778885 499999998763
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-30 Score=287.38 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=177.5
Q ss_pred hhHHHHHHHHhHHH----HHh---h----hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcch
Q 018083 64 RDAVFREVLQSYDQ----LRT---R----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 132 (361)
Q Consensus 64 ~~~~~~~~l~~~~~----~~~---~----~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKST 132 (361)
.++|+.|-.+.++| .+. + ..+.|+++|++.+|.++.+ .+ |++|||+|++||.+||||..||||||
T Consensus 1106 SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp-~V---Lk~is~~I~p~eKVGIVGRTGaGKSS 1181 (1381)
T KOG0054|consen 1106 SVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLP-LV---LKGISFTIKPGEKVGIVGRTGAGKSS 1181 (1381)
T ss_pred hhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCc-ch---hcCceEEEcCCceEEEeCCCCCCHHH
Confidence 44587777764433 101 0 3347999999999988754 56 55599999999999999999999999
Q ss_pred hhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEE
Q 018083 133 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 212 (361)
Q Consensus 133 Ll~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~ 212 (361)
|+++|-++.. |.+|+|.+||.|+. .+.+.|+|+.++++||+|.+|+.|++.|+--
T Consensus 1182 L~~aLFRl~e-----~~~G~I~IDgvdI~---------------~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP----- 1236 (1381)
T KOG0054|consen 1182 LILALFRLVE-----PAEGEILIDGVDIS---------------KIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP----- 1236 (1381)
T ss_pred HHHHHHHhcC-----ccCCeEEEcCeecc---------------cccHHHHHhcCeeeCCCCceecCccccccCc-----
Confidence 9999999999 99999999999997 6889999999999999999999999888761
Q ss_pred ecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec
Q 018083 213 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 283 (361)
Q Consensus 213 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~ 283 (361)
. .+-..+++-++|+.+++.+.+...+..+...| ..-...+|-||||.+|+|||| ||+|++.|
T Consensus 1237 --f-~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v------~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD 1307 (1381)
T KOG0054|consen 1237 --F-DEYSDDEIWEALERCQLKDVVSSLPGGLDSEV------SEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVD 1307 (1381)
T ss_pred --c-cccCHHHHHHHHHHhChHHHHhhCCcCCCcee------cCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCC
Confidence 1 12334566677888877654322222211111 233456999999999999998 99999976
Q ss_pred C---------------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCC
Q 018083 284 D---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESS 328 (361)
Q Consensus 284 ~---------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~ 328 (361)
. ++|||.|.| ..+.. ||||+ ||++|++++.++|++++.++...
T Consensus 1308 ~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVl-Vld~G~v~EfdsP~~Ll~~~~S~ 1367 (1381)
T KOG0054|consen 1308 PETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVL-VLDAGRVVEFDSPAELLSDKDSL 1367 (1381)
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEE-EeeCCeEeecCChHHHHhCCcch
Confidence 4 999999999 45554 89995 69999999999999999887643
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-30 Score=237.35 Aligned_cols=200 Identities=16% Similarity=0.150 Sum_probs=148.5
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+.+|+++||+.+-.+. .++ |++|||+|++||+++|+||||||||||.++|+|.-. |.+++|+|.++|+++.
T Consensus 1 m~~L~I~dLhv~v~~~--keI---LkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---Y~Vt~G~I~~~GedI~- 71 (251)
T COG0396 1 MMMLEIKDLHVEVEGK--KEI---LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---YEVTEGEILFDGEDIL- 71 (251)
T ss_pred CceeEEeeeEEEecCc--hhh---hcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---ceEecceEEECCcccc-
Confidence 3579999999998764 255 555999999999999999999999999999999875 4499999999999987
Q ss_pred ceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEEecCC--ChhhhhhhcccccccCCCccee
Q 018083 163 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVIRRSD--SSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~--~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
...+.+. +.-+.+.||.|.-++. ++.+-+..+....+... ..+..++++++++.++++++
T Consensus 72 --------------~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~-- 135 (251)
T COG0396 72 --------------ELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE-- 135 (251)
T ss_pred --------------cCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHH--
Confidence 2222222 1223335777655444 33333332221111111 23556788889999999874
Q ss_pred EEEEEEEEEEechhhhhhccC-Cchhhhhhhhhhhhcc---------CCCceeec----------------CCccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPt~~L~----------------~g~tvIiiT 292 (361)
++++..+ .+|||+|+|..|++++ |||.|||| .+.++|+||
T Consensus 136 --------------~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liIT 201 (251)
T COG0396 136 --------------FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIIT 201 (251)
T ss_pred --------------HhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 4677777 5999999999999987 99999965 289999999
Q ss_pred c-Cccccc--cchhhHhhhhhhhcCCCCcccccc
Q 018083 293 H-GDLLSL--TDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 293 H-~~~~~~--aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
| ..++.+ .|++. +|.+|+|+..|.+ ++..
T Consensus 202 Hy~rll~~i~pD~vh-vl~~GrIv~sG~~-el~~ 233 (251)
T COG0396 202 HYQRLLDYIKPDKVH-VLYDGRIVKSGDP-ELAE 233 (251)
T ss_pred cHHHHHhhcCCCEEE-EEECCEEEecCCH-HHHH
Confidence 9 444444 49996 5999999999998 5544
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-30 Score=294.03 Aligned_cols=212 Identities=11% Similarity=0.091 Sum_probs=153.0
Q ss_pred hhhhhhHHHHHHHHhHHHHHh-----h---hc-cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCc
Q 018083 60 DQRRRDAVFREVLQSYDQLRT-----R---IG-SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGK 130 (361)
Q Consensus 60 ~~~~~~~~~~~~l~~~~~~~~-----~---~~-~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGK 130 (361)
..+....|+.++++.+++.+. . .. ..++++|+++.|++.. .++ |+|+||+|++|++++|+|||||||
T Consensus 602 ~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~---l~~isl~i~~G~~v~IvG~~GsGK 677 (1522)
T TIGR00957 602 QASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDL-PPT---LNGITFSIPEGALVAVVGQVGCGK 677 (1522)
T ss_pred HHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCC-Cce---eeeeEEEEcCCCEEEEECCCCCCH
Confidence 334445599999975432111 0 11 2699999999997532 135 666999999999999999999999
Q ss_pred chhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhcccccee
Q 018083 131 SSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL 210 (361)
Q Consensus 131 STLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~ 210 (361)
|||+++|+|+++ |++|+|.++| .++|++|++.++..++.+||.++..
T Consensus 678 STLl~~l~g~~~-----~~~G~i~~~g----------------------------~i~yv~Q~~~l~~~Ti~eNI~~g~~ 724 (1522)
T TIGR00957 678 SSLLSALLAEMD-----KVEGHVHMKG----------------------------SVAYVPQQAWIQNDSLRENILFGKA 724 (1522)
T ss_pred HHHHHHHhCCCc-----cCCcEEEECC----------------------------EEEEEcCCccccCCcHHHHhhcCCc
Confidence 999999999999 9999999875 1677899988887799999998753
Q ss_pred EEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCcee
Q 018083 211 VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLS 281 (361)
Q Consensus 211 ~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~ 281 (361)
. +.+.. .++++.+++.+++...++...+ ...+.+.+||||||||++||||+ |||+++
T Consensus 725 ~----~~~~~----~~~~~~~~l~~~l~~~~~g~~t------~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~sa 790 (1522)
T TIGR00957 725 L----NEKYY----QQVLEACALLPDLEILPSGDRT------EIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 790 (1522)
T ss_pred c----CHHHH----HHHHHHhCCHHHHHhcCCCCCc------eecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 1 11111 2222222222111000001111 23567889999999999999999 999999
Q ss_pred ecC------------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 282 FRD------------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 282 L~~------------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
||. ++|+|++|| ......||+|+ +|++|++++.|+++++..
T Consensus 791 LD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii-~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 791 VDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVII-VMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred cCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEE-EecCCeEEeeCCHHHHHh
Confidence 653 589999999 34445699995 699999999999888764
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-30 Score=268.54 Aligned_cols=183 Identities=14% Similarity=0.082 Sum_probs=138.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ +.
T Consensus 323 ~~l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~-~~--- 387 (556)
T PRK11819 323 KVIEAENLSKSFGDR---LL---IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-----PDSGTIKIGE-TV--- 387 (556)
T ss_pred eEEEEEeEEEEECCe---ee---ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECC-ce---
Confidence 479999999999753 45 666999999999999999999999999999999999 9999999843 21
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccch-HHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNI-NMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~-~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.++|++|++ .+++. ++.+|+.++..... .... ...+..+++.+++.+.
T Consensus 388 ----------------------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~--~~~~~~~l~~~~l~~~----- 437 (556)
T PRK11819 388 ----------------------KLAYVDQSRDALDPNKTVWEEISGGLDIIK-VGNR--EIPSRAYVGRFNFKGG----- 437 (556)
T ss_pred ----------------------EEEEEeCchhhcCCCCCHHHHHHhhccccc-cccc--HHHHHHHHHhCCCChh-----
Confidence 255666664 33333 77788776542111 1111 1234467888998642
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cccc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~ 297 (361)
.+++++.+||||||||++||||| ||||++||. ..|||+||| +.+.
T Consensus 438 -----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~ 506 (556)
T PRK11819 438 -----------DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLD 506 (556)
T ss_pred -----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence 24889999999999999999999 999999863 348999999 5677
Q ss_pred cccchhhHhhhh-hhhc-CCCCcccccc
Q 018083 298 SLTDRARIRTYL-GELL-GIPPAKQIFD 323 (361)
Q Consensus 298 ~~aDri~vvl~~-G~iv-~~g~~~~i~~ 323 (361)
.+||+++ +|++ |++. ..|+..++++
T Consensus 507 ~~~d~i~-~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 507 RIATHIL-AFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred HhCCEEE-EEECCCeEEEecCCHHHHHH
Confidence 8999996 5885 7765 4566555443
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-30 Score=266.84 Aligned_cols=179 Identities=14% Similarity=0.084 Sum_probs=134.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ ++
T Consensus 320 ~~~l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~~-~~-- 385 (552)
T TIGR03719 320 DKVIEAENLSKGFGDK---LL---IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ-----PDSGTIKIGE-TV-- 385 (552)
T ss_pred CeEEEEeeEEEEECCe---ee---eccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEECC-ce--
Confidence 3579999999999753 45 666999999999999999999999999999999999 9999999843 21
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH-HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.++|++|++. +++. ++.+|+.++..... .... ..++.++++.+++...
T Consensus 386 -----------------------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~--~~~~~~~l~~~~l~~~---- 435 (552)
T TIGR03719 386 -----------------------KLAYVDQSRDALDPNKTVWEEISGGLDIIQ-LGKR--EVPSRAYVGRFNFKGS---- 435 (552)
T ss_pred -----------------------EEEEEeCCccccCCCCcHHHHHHhhccccc-cCcc--hHHHHHHHHhCCCChh----
Confidence 2455666542 3333 67777776542111 1111 2234567888998642
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Ccc
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDL 296 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~ 296 (361)
..++++.+||||||||++||||| ||||++||. +.|||+||| +.+
T Consensus 436 ------------~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~ 503 (552)
T TIGR03719 436 ------------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFL 503 (552)
T ss_pred ------------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 24789999999999999999999 999999863 458999999 567
Q ss_pred ccccchhhHhhhh-hhhc-CCCCc
Q 018083 297 LSLTDRARIRTYL-GELL-GIPPA 318 (361)
Q Consensus 297 ~~~aDri~vvl~~-G~iv-~~g~~ 318 (361)
..+||+++ +|++ |+++ ..|+.
T Consensus 504 ~~~~d~i~-~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 504 DRIATHIL-AFEGDSHVEWFEGNY 526 (552)
T ss_pred HHhCCEEE-EEECCCeEEEeCCCH
Confidence 78999996 5886 5665 34444
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-30 Score=229.54 Aligned_cols=200 Identities=15% Similarity=0.176 Sum_probs=160.2
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc-cccCc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS-SVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G-~~i~~ 162 (361)
.+|++++++++|++ ..| |+++||+|.+||.-+|||||||||||++-.|+|-.+ |+.|+|+++| .++..
T Consensus 4 ~iL~~~~vsVsF~G---F~A---ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-----p~~G~v~f~g~~dl~~ 72 (249)
T COG4674 4 IILYLDGVSVSFGG---FKA---LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-----PQEGEVLFDGDTDLTK 72 (249)
T ss_pred ceEEEeceEEEEcc---eee---eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-----CCcceEEEcCchhhcc
Confidence 47899999999987 477 555999999999999999999999999999999999 9999999999 77752
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec-------CCChhhhhhhcccccccCCC
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR-------SDSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~-------~~~~~~~~~v~~~l~~~gl~ 234 (361)
. .++.|. |.-++--||.|..|.. ++++|+.......+. ....+-+.+++++|...||.
T Consensus 73 ~---~e~~IA-----------r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~ 138 (249)
T COG4674 73 L---PEHRIA-----------RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG 138 (249)
T ss_pred C---CHHHHH-----------HhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc
Confidence 1 122222 2234445777776666 777777655432111 11244567899999999999
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceee---------------cCCccEEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF---------------RDDKPVVV 290 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L---------------~~g~tvIi 290 (361)
++. +.....||.||||++.|+..+ |||++|+ ..+.+|++
T Consensus 139 ~~~-----------------~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilV 201 (249)
T COG4674 139 DER-----------------DRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILV 201 (249)
T ss_pred hhh-----------------hhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEE
Confidence 843 888999999999999999988 9999994 34889999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|.| ..+.++|++|.| |+.|.++..|+.+++-.+|.
T Consensus 202 VEHDM~Fvr~~A~~VTV-lh~G~VL~EGsld~v~~dp~ 238 (249)
T COG4674 202 VEHDMGFVREIADKVTV-LHEGSVLAEGSLDEVQNDPK 238 (249)
T ss_pred EeccHHHHHHhhheeEE-EeccceeecccHHHhhcCcc
Confidence 999 688999999985 99999999999999877764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-29 Score=266.08 Aligned_cols=170 Identities=13% Similarity=0.060 Sum_probs=131.0
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++++++|+++.|++. . |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++ +.
T Consensus 338 ~~~l~~~~ls~~~~~~--~-----l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-----p~~G~I~~~---~~- 401 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF--S-----LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-----PDEGEVDPE---LK- 401 (590)
T ss_pred ceEEEEcceEEEECCE--E-----EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEe---ee-
Confidence 4579999999999652 2 666999999999999999999999999999999999 999999875 11
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
++|++|++.++.. ++.+++.++.. ... ....+.++++.+++.+
T Consensus 402 ------------------------i~y~~Q~~~~~~~~tv~e~l~~~~~---~~~---~~~~~~~~L~~l~l~~------ 445 (590)
T PRK13409 402 ------------------------ISYKPQYIKPDYDGTVEDLLRSITD---DLG---SSYYKSEIIKPLQLER------ 445 (590)
T ss_pred ------------------------EEEecccccCCCCCcHHHHHHHHhh---hcC---hHHHHHHHHHHCCCHH------
Confidence 2333444332222 56666654321 111 1224567889999986
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
.+++++.+||||||||++||||| ||||++||. +.|||+|||
T Consensus 446 -----------~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~ 514 (590)
T PRK13409 446 -----------LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514 (590)
T ss_pred -----------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45999999999999999999999 999999752 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~ 317 (361)
.++..+|||++ +|+ |++...|.
T Consensus 515 ~~~~~~aDrvi-vl~-~~~~~~g~ 536 (590)
T PRK13409 515 YMIDYISDRLM-VFE-GEPGKHGH 536 (590)
T ss_pred HHHHHhCCEEE-EEc-Ccceeeee
Confidence 46778999995 475 57766665
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-29 Score=267.63 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=134.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..
T Consensus 310 ~~~l~~~~l~~~y~~~---~i---l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-~~- 376 (638)
T PRK10636 310 NPLLKMEKVSAGYGDR---II---LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-----PVSGEIGLAKG-IK- 376 (638)
T ss_pred CceEEEEeeEEEeCCe---ee---eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCC-EE-
Confidence 3479999999999753 45 666999999999999999999999999999999999 99999998631 11
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccch--HHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
++|++|+. .+.+. ++.+++.. .......+++..+++.+++...
T Consensus 377 ------------------------igy~~Q~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~L~~~~l~~~--- 422 (638)
T PRK10636 377 ------------------------LGYFAQHQLEFLRADESPLQHLAR-------LAPQELEQKLRDYLGGFGFQGD--- 422 (638)
T ss_pred ------------------------EEEecCcchhhCCccchHHHHHHH-------hCchhhHHHHHHHHHHcCCChh---
Confidence 12222221 01111 22232210 0112234567788999999642
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cc
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GD 295 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~ 295 (361)
..++++.+||||||||++|||+| ||||++||. +.|||+||| ..
T Consensus 423 -------------~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~ 489 (638)
T PRK10636 423 -------------KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHL 489 (638)
T ss_pred -------------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 24789999999999999999999 999999863 459999999 56
Q ss_pred cccccchhhHhhhhhhhc-CCCCcccc
Q 018083 296 LLSLTDRARIRTYLGELL-GIPPAKQI 321 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv-~~g~~~~i 321 (361)
+..+||+++ +|++|+++ ..|+.+++
T Consensus 490 ~~~~~d~i~-~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 490 LRSTTDDLY-LVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHhCCEEE-EEECCEEEEcCCCHHHH
Confidence 778999996 59999997 77877765
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-29 Score=267.57 Aligned_cols=175 Identities=11% Similarity=0.109 Sum_probs=133.1
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+ |.++.
T Consensus 318 ~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~-~~~~~-- 383 (635)
T PRK11147 318 IVFEMENVNYQIDGK---QL---VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ-----ADSGRIHC-GTKLE-- 383 (635)
T ss_pred ceEEEeeeEEEECCe---EE---EcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEE-CCCcE--
Confidence 479999999999753 45 666999999999999999999999999999999999 99999988 54332
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccch-HHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNI-NMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~-~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
++|++|+. .+++. ++.+|+.++.... .. .....++.++++.+++...
T Consensus 384 -----------------------i~y~~q~~~~l~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~l~~~~l~~~----- 432 (635)
T PRK11147 384 -----------------------VAYFDQHRAELDPEKTVMDNLAEGKQEV-MV--NGRPRHVLGYLQDFLFHPK----- 432 (635)
T ss_pred -----------------------EEEEeCcccccCCCCCHHHHHHhhcccc-cc--cchHHHHHHHHHhcCCCHH-----
Confidence 33444443 12232 5666665532210 00 1123456778888888642
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cccc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~ 297 (361)
..++++.+||||||||++||||| ||||++||. +.|||+||| .++.
T Consensus 433 -----------~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~ 501 (635)
T PRK11147 433 -----------RAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVD 501 (635)
T ss_pred -----------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence 24889999999999999999999 999999863 569999999 4677
Q ss_pred cccchhhHhhh-hhhhcCC
Q 018083 298 SLTDRARIRTY-LGELLGI 315 (361)
Q Consensus 298 ~~aDri~vvl~-~G~iv~~ 315 (361)
.+||+++ +++ +|++...
T Consensus 502 ~~~d~i~-~l~~~g~i~~~ 519 (635)
T PRK11147 502 NTVTECW-IFEGNGKIGRY 519 (635)
T ss_pred HhcCEEE-EEeCCCeEEEc
Confidence 8999996 587 7988653
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-29 Score=230.84 Aligned_cols=190 Identities=17% Similarity=0.151 Sum_probs=148.0
Q ss_pred ccccccceeeecCcce--eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~--~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
|++++|+.+.|.++.. .+++++ +|++|++|+++.|+|.||||||||+|+|+|-+. |++|+|+++|.+++
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~---~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-----~t~G~I~Idg~dVt- 71 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNG---LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-----PTSGQILIDGVDVT- 71 (263)
T ss_pred CcccccceeeecCCChhHHHHHhc---CceeecCCceEEEEcCCCccHHHHHHHhhCccc-----cCCceEEECceecc-
Confidence 4678888888765432 467555 999999999999999999999999999999999 99999999999997
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHH--HHH-HHHhccccceeEE--ecCC---ChhhhhhhcccccccC--
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINM--IKL-WIMEGVRHGELVI--RRSD---SSSLRNRMRCKAHKIG-- 232 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l--~~~-ti~~ni~~~~~~~--~~~~---~~~~~~~v~~~l~~~g-- 232 (361)
.+..+.....++-|||+|.. ++. +|.+|+....... +... ....++..++.+..++
T Consensus 72 --------------k~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lg 137 (263)
T COG1101 72 --------------KKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLG 137 (263)
T ss_pred --------------cCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccc
Confidence 23444444556778999975 444 9999998765421 1111 1222333333445444
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------Cc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 286 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~ 286 (361)
+++ .++.+..-|||||||-++++.|. ||-|++||+ +.
T Consensus 138 Len-----------------rL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~kl 200 (263)
T COG1101 138 LEN-----------------RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200 (263)
T ss_pred hhh-----------------hhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCC
Confidence 455 46888999999999999999996 999999886 88
Q ss_pred cEEEEEc--CccccccchhhHhhhhhhhcCC
Q 018083 287 PVVVVTH--GDLLSLTDRARIRTYLGELLGI 315 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~vvl~~G~iv~~ 315 (361)
|.+|||| .+|..|.+|.+ +|+.|+|+.+
T Consensus 201 TtlMVTHnm~~Al~yG~RlI-mLh~G~IvlD 230 (263)
T COG1101 201 TTLMVTHNMEDALDYGNRLI-MLHSGKIVLD 230 (263)
T ss_pred ceEEEeccHHHHHhhCCeEE-EEeCCeEEEE
Confidence 9999999 78999999995 6999999875
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-29 Score=263.74 Aligned_cols=199 Identities=12% Similarity=0.066 Sum_probs=140.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++||+++|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|... .++
T Consensus 1 ~i~i~nls~~~g~~---~~---l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-----pd~G~I~~~~~~~-i~~ 68 (638)
T PRK10636 1 MIVFSSLQIRRGVR---VL---LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS-----ADGGSYTFPGNWQ-LAW 68 (638)
T ss_pred CEEEEEEEEEeCCc---ee---ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCCE-EEE
Confidence 58899999999763 45 666999999999999999999999999999999999 9999999988531 223
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHh------cc--ccceeEE--ecCCChhhhhhhcccccccCC
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIME------GV--RHGELVI--RRSDSSSLRNRMRCKAHKIGC 233 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~------ni--~~~~~~~--~~~~~~~~~~~v~~~l~~~gl 233 (361)
..+... . ..+..+++++|....+.. +..- +. .++.... ........+.++.++++.+|+
T Consensus 69 ~~q~~~--------~--~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl 138 (638)
T PRK10636 69 VNQETP--------A--LPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGF 138 (638)
T ss_pred EecCCC--------C--CCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Confidence 322110 0 013345666665433322 1100 00 0000000 001112345678889999999
Q ss_pred CcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEE
Q 018083 234 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVV 291 (361)
Q Consensus 234 ~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIii 291 (361)
.+. .+++++.+||||||||++||||| ||||++||. +.|||+|
T Consensus 139 ~~~----------------~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviiv 202 (638)
T PRK10636 139 SNE----------------QLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILI 202 (638)
T ss_pred Cch----------------hhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEE
Confidence 632 24889999999999999999999 999999863 6799999
Q ss_pred Ec--CccccccchhhHhhhhhhhc-CCCCccccc
Q 018083 292 TH--GDLLSLTDRARIRTYLGELL-GIPPAKQIF 322 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv-~~g~~~~i~ 322 (361)
|| ..+..+||+++ +|++|+++ ..|+.....
T Consensus 203 sHd~~~l~~~~d~i~-~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 203 SHDRDFLDPIVDKII-HIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred eCCHHHHHHhcCEEE-EEeCCEEEEecCCHHHHH
Confidence 99 46778999996 59999986 356655443
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-29 Score=234.22 Aligned_cols=160 Identities=12% Similarity=0.075 Sum_probs=116.3
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee-ecccccCcceEeEeeeecCCCcceeeeecCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 185 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~-i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~ 185 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|. ++|..+.
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~sG~i~~~~~~~~~------------------------ 53 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA-----PDEGDFIGLRGDALP------------------------ 53 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCCCEEEecCceec------------------------
Confidence 566999999999999999999999999999999999 9999997 6654321
Q ss_pred CCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhh
Q 018083 186 LSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 264 (361)
Q Consensus 186 ~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGG 264 (361)
+.+.+.+++. ++.+|+.+..... ..+..... ..+.+..++.. .+++++.+||+|
T Consensus 54 ----~~~~~~l~~~ltv~enl~~~~~~~-~~~~~~~~---~~~~~~~~l~~-----------------~~~~~~~~lS~G 108 (213)
T PRK15177 54 ----LGANSFILPGLTGEENARMMASLY-GLDGDEFS---HFCYQLTQLEQ-----------------CYTDRVSEYSVT 108 (213)
T ss_pred ----cccccccCCcCcHHHHHHHHHHHc-CCCHHHHH---HHHHHHhChhH-----------------HhhchHhhcCHH
Confidence 0011122232 4555555432211 11112212 12234456655 347889999999
Q ss_pred hhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCc
Q 018083 265 KQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 265 qrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
||||++||||| |||++++++ +.|+|++|| ..+..+||+++ +|++|+++..++.
T Consensus 109 ~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~-~l~~G~i~~~~~~ 187 (213)
T PRK15177 109 MKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFG-VLLHGKITMCEDL 187 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeE-EEECCeEEEeCCH
Confidence 99999999999 999988543 678999999 46678999996 5999999988877
Q ss_pred ccc
Q 018083 319 KQI 321 (361)
Q Consensus 319 ~~i 321 (361)
++.
T Consensus 188 ~~~ 190 (213)
T PRK15177 188 AQA 190 (213)
T ss_pred HHH
Confidence 655
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-29 Score=214.81 Aligned_cols=166 Identities=15% Similarity=0.154 Sum_probs=140.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
++.++|++.+.++. .. |-++||+|.+||++.|+||||||||||+.-+.|.+.++- ..+|++++++++++
T Consensus 2 ~l~l~nvsl~l~g~---cL---La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F--~~~G~~~l~~~~l~--- 70 (213)
T COG4136 2 MLCLKNVSLRLPGS---CL---LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQF--SCTGELWLNEQRLD--- 70 (213)
T ss_pred ceeeeeeeecCCCc---eE---EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCc--ceeeEEEECCeecc---
Confidence 57899999888764 44 666999999999999999999999999999999998442 46899999999886
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.+...++.+++.||++.+|+. +|.+|+.|.+...- .....+..+..++++.|+..
T Consensus 71 --------------~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~--KG~aRr~~a~aAL~~~gL~g-------- 126 (213)
T COG4136 71 --------------MLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATL--KGNARRNAANAALERSGLDG-------- 126 (213)
T ss_pred --------------ccchhhhheeeeecccccccccccccceEEecCccc--ccHHHHhhHHHHHHHhccch--------
Confidence 233456778999999999999 99999999876422 23456677888999999988
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEcC
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG 294 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH~ 294 (361)
..++.|.+||||||-|+++-|+| |||+|.||. |.++|+|||+
T Consensus 127 ---------~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD 194 (213)
T COG4136 127 ---------AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194 (213)
T ss_pred ---------hhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 56999999999999999999998 999999752 9999999994
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-29 Score=267.24 Aligned_cols=177 Identities=16% Similarity=0.164 Sum_probs=142.4
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+|+|++|++||+++|+||||||||||+++|+|..+.+. ..+|+|.++|.++. . ...++.
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~--~~~G~i~~~g~~~~---------------~---~~~~~~ 100 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGV--KGSGSVLLNGMPID---------------A---KEMRAI 100 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEECC---------------H---HHHhhh
Confidence 566999999999999999999999999999999987110 13799999997754 0 123456
Q ss_pred CcccccchHHHHH-HHHhccccceeEEe--cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccC----
Q 018083 187 SDDASDNINMIKL-WIMEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG---- 259 (361)
Q Consensus 187 i~~v~q~~~l~~~-ti~~ni~~~~~~~~--~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~---- 259 (361)
++||+|+..+++. ++.+|+.++..... ...+++.++++.++++.+++.+. ++..+.
T Consensus 101 i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------------~~t~vg~~~~ 163 (617)
T TIGR00955 101 SAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKC-----------------ANTRIGVPGR 163 (617)
T ss_pred ceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhc-----------------CcCccCCCCC
Confidence 8999999988877 99999998754321 11234455678899999999762 244443
Q ss_pred --Cchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcC---ccccccchhhHhhhh
Q 018083 260 --DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG---DLLSLTDRARIRTYL 309 (361)
Q Consensus 260 --~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~---~~~~~aDri~vvl~~ 309 (361)
+||||||||++|||+| ||||++||. |+|||+++|. ++..+||+++ +|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~-ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKII-LMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEE-EeeC
Confidence 6999999999999999 999999753 8999999992 4678999996 5999
Q ss_pred hhhcCCCCcccc
Q 018083 310 GELLGIPPAKQI 321 (361)
Q Consensus 310 G~iv~~g~~~~i 321 (361)
|+++..|+++++
T Consensus 243 G~~v~~G~~~~~ 254 (617)
T TIGR00955 243 GRVAYLGSPDQA 254 (617)
T ss_pred CeEEEECCHHHH
Confidence 999999999877
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-29 Score=237.93 Aligned_cols=145 Identities=13% Similarity=0.104 Sum_probs=104.8
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD 189 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~ 189 (361)
.+++|++|++++|+||||||||||+++|+|+++ |++|+|.++|..+ ++
T Consensus 18 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-----p~~G~i~~~g~~i---------------------------~~ 65 (246)
T cd03237 18 EGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-----PDEGDIEIELDTV---------------------------SY 65 (246)
T ss_pred ecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCceE---------------------------EE
Confidence 444556899999999999999999999999999 9999999988532 11
Q ss_pred cccchHH-HHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhh
Q 018083 190 ASDNINM-IKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 268 (361)
Q Consensus 190 v~q~~~l-~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQR 268 (361)
++|++.. +..++.+++.+...... .....+.++++.+++.. .+++++.+||||||||
T Consensus 66 ~~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~l~~l~l~~-----------------~~~~~~~~LSgGe~qr 123 (246)
T cd03237 66 KPQYIKADYEGTVRDLLSSITKDFY-----THPYFKTEIAKPLQIEQ-----------------ILDREVPELSGGELQR 123 (246)
T ss_pred ecccccCCCCCCHHHHHHHHhhhcc-----ccHHHHHHHHHHcCCHH-----------------HhhCChhhCCHHHHHH
Confidence 2222211 11234444432211000 01123456788888876 4588999999999999
Q ss_pred hhhhhcc---------CCCceeecC-----------------CccEEEEEc--CccccccchhhHhhhh
Q 018083 269 QIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYL 309 (361)
Q Consensus 269 vaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl~~ 309 (361)
++||||| ||||++||. ++|||+||| ..+..+||+++ +|+.
T Consensus 124 v~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~-~l~~ 191 (246)
T cd03237 124 VAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLI-VFEG 191 (246)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE-EEcC
Confidence 9999999 999999752 789999999 46678999995 4754
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-29 Score=262.46 Aligned_cols=195 Identities=13% Similarity=0.190 Sum_probs=136.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.. ..+
T Consensus 2 ~~l~i~~ls~~~~~~---~i---l~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-----p~~G~I~~~~~~-~~~ 69 (635)
T PRK11147 2 SLISIHGAWLSFSDA---PL---LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-----LDDGRIIYEQDL-IVA 69 (635)
T ss_pred cEEEEeeEEEEeCCc---ee---EeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEeCCCC-EEE
Confidence 479999999999763 45 666999999999999999999999999999999999 999999998732 111
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHH-----HHH-HH-------------HhccccceeE---EecCCChhhh
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINM-----IKL-WI-------------MEGVRHGELV---IRRSDSSSLR 221 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l-----~~~-ti-------------~~ni~~~~~~---~~~~~~~~~~ 221 (361)
+..+. ..+...++++|.... +.. +. .+++...... .........+
T Consensus 70 ~l~q~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 136 (635)
T PRK11147 70 RLQQD-------------PPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLE 136 (635)
T ss_pred EeccC-------------CCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHH
Confidence 21111 011122334443210 000 00 0111100000 0000112345
Q ss_pred hhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--------
Q 018083 222 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------- 284 (361)
Q Consensus 222 ~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------- 284 (361)
.++.++++.+|+.. ++++.+||||||||++||||| ||||++||.
T Consensus 137 ~~~~~~l~~lgl~~-------------------~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~ 197 (635)
T PRK11147 137 NRINEVLAQLGLDP-------------------DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEG 197 (635)
T ss_pred HHHHHHHHhCCCCC-------------------CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH
Confidence 67788899999864 678999999999999999999 999999864
Q ss_pred -----CccEEEEEc--CccccccchhhHhhhhhhhcC-CCCcccccc
Q 018083 285 -----DKPVVVVTH--GDLLSLTDRARIRTYLGELLG-IPPAKQIFD 323 (361)
Q Consensus 285 -----g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~-~g~~~~i~~ 323 (361)
+.|||+||| ..+..+||+|+ +|++|+++. .|+..+++.
T Consensus 198 ~L~~~~~tvlivsHd~~~l~~~~d~i~-~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 198 FLKTFQGSIIFISHDRSFIRNMATRIV-DLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred HHHhCCCEEEEEeCCHHHHHHhcCeEE-EEECCEEEEecCCHHHHHH
Confidence 569999999 46778999996 599999974 577665544
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-29 Score=267.24 Aligned_cols=179 Identities=15% Similarity=0.132 Sum_probs=129.5
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.. ..+
T Consensus 507 ~~L~~~~ls~~y~~~~--~i---l~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-----p~~G~I~~~~~~-~ig 575 (718)
T PLN03073 507 PIISFSDASFGYPGGP--LL---FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-----PSSGTVFRSAKV-RMA 575 (718)
T ss_pred ceEEEEeeEEEeCCCC--ee---EeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCceEEECCce-eEE
Confidence 5799999999996432 35 666999999999999999999999999999999999 999999986521 112
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
|++|. ..... .+.++..++... .. .....+++..+++.+++.+.
T Consensus 576 yv~Q~--------------~~~~l-~~~~~~~~~~~~-------------~~-~~~~~~~i~~~L~~~gl~~~------- 619 (718)
T PLN03073 576 VFSQH--------------HVDGL-DLSSNPLLYMMR-------------CF-PGVPEQKLRAHLGSFGVTGN------- 619 (718)
T ss_pred EEecc--------------ccccC-CcchhHHHHHHH-------------hc-CCCCHHHHHHHHHHCCCChH-------
Confidence 22221 00000 011111110000 00 01123567788999999742
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cccccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSL 299 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~~~ 299 (361)
.+++++.+||||||||++||||| ||||++||. +.|||+||| ..+..+
T Consensus 620 ---------~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~ 690 (718)
T PLN03073 620 ---------LALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGS 690 (718)
T ss_pred ---------HhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHh
Confidence 24789999999999999999999 999999763 459999999 567789
Q ss_pred cchhhHhhhhhhhc-CCCCcc
Q 018083 300 TDRARIRTYLGELL-GIPPAK 319 (361)
Q Consensus 300 aDri~vvl~~G~iv-~~g~~~ 319 (361)
||+++ +|++|+++ ..|+.+
T Consensus 691 ~drv~-~l~~G~i~~~~g~~~ 710 (718)
T PLN03073 691 VDELW-VVSEGKVTPFHGTFH 710 (718)
T ss_pred CCEEE-EEECCEEEEeCCCHH
Confidence 99996 59999987 556554
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-29 Score=274.65 Aligned_cols=207 Identities=15% Similarity=0.111 Sum_probs=163.2
Q ss_pred HHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhh
Q 018083 66 AVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 137 (361)
Q Consensus 66 ~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I 137 (361)
.|+.++|..+...+.. ....++++|.++++.+....+. |+||||+|++|+.+||+||.|||||||+.+|
T Consensus 491 ~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~t---L~dIn~~i~~G~lvaVvG~vGsGKSSLL~Ai 567 (1381)
T KOG0054|consen 491 KRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPT---LKDINFEIKKGQLVAVVGPVGSGKSSLLSAI 567 (1381)
T ss_pred HHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCccc---ccceeEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 3999999755332111 3347999999999976332235 6669999999999999999999999999999
Q ss_pred hhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCC
Q 018083 138 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 217 (361)
Q Consensus 138 ~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~ 217 (361)
.|-++ ..+|.|.++| .++||+|.+.++..+|++||.||.+.
T Consensus 568 LGEm~-----~~sG~v~v~g----------------------------siaYv~Q~pWI~ngTvreNILFG~~~------ 608 (1381)
T KOG0054|consen 568 LGEMP-----KLSGSVAVNG----------------------------SVAYVPQQPWIQNGTVRENILFGSPY------ 608 (1381)
T ss_pred hcCcc-----cccceEEEcC----------------------------eEEEeccccHhhCCcHHHhhhcCccc------
Confidence 99999 9999999876 16789999999999999999998763
Q ss_pred hhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----
Q 018083 218 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 284 (361)
Q Consensus 218 ~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---- 284 (361)
.+++-+++++..+|..++.-.+++=-++| .++..+||||||||+++|||+ |.|.|++|.
T Consensus 609 --d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeI------GErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~ 680 (1381)
T KOG0054|consen 609 --DEERYDKVIKACALKKDLEILPFGDLTEI------GERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGK 680 (1381)
T ss_pred --cHHHHHHHHHHccCHhHHhhcCCCCccee------cCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhH
Confidence 22344445556666554322223323333 445568999999999999999 999999653
Q ss_pred ------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
++|+|++|| -.....||.|+ +|++|+|.+.|+.+++..
T Consensus 681 ~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Ii-vl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 681 HIFEECIRGLLRGKTVILVTHQLQFLPHADQII-VLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEE-EecCCeEecccCHHHHHh
Confidence 899999999 67778899995 699999999999999874
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-29 Score=281.89 Aligned_cols=193 Identities=14% Similarity=0.091 Sum_probs=150.1
Q ss_pred ccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+++++||++.|+.+ ...++ |++||++|++|++++|+||||||||||+++|+|+.+.+. |++|+|.++|+++.
T Consensus 759 ~l~~~nl~~~~~~~~~~~~i---L~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~--~~~G~I~i~G~~~~-- 831 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVI---LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGV--ITGGDRLVNGRPLD-- 831 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEe---eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEECC--
Confidence 57899999999521 11356 566999999999999999999999999999999986332 68899999998763
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe--cCCChhhhhhhcccccccCCCcceeEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~--~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. +.++.++||+|+..+++. ++.+++.++..... ..+.++..++++++++.+++.+
T Consensus 832 -------------~----~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~----- 889 (1394)
T TIGR00956 832 -------------S----SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES----- 889 (1394)
T ss_pred -------------h----hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-----
Confidence 0 234567899998655554 99999988653221 1122344567888999999976
Q ss_pred EEEEEEEEechhhhhhccC----Cchhhhhhhhhhhhcc----------CCCceeecC----------------CccEEE
Q 018083 241 VNFVIFVVDGLAVLKSMEG----DSDVEKQYNQIVATTF----------NCPYLSFRD----------------DKPVVV 290 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~----~LSGGqrQRvaIArAL----------DEPt~~L~~----------------g~tvIi 290 (361)
.+++.+. +||||||||++||+|| ||||++||. |+|||+
T Consensus 890 ------------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~ 957 (1394)
T TIGR00956 890 ------------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957 (1394)
T ss_pred ------------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3466655 7999999999999988 999999763 899999
Q ss_pred EEcC--c-cccccchhhHhhhhh-hhcCCCCcc
Q 018083 291 VTHG--D-LLSLTDRARIRTYLG-ELLGIPPAK 319 (361)
Q Consensus 291 iTH~--~-~~~~aDri~vvl~~G-~iv~~g~~~ 319 (361)
+||+ . +...||+++ +|++| +++..|++.
T Consensus 958 t~H~~~~~~~~~~D~vl-~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 958 TIHQPSAILFEEFDRLL-LLQKGGQTVYFGDLG 989 (1394)
T ss_pred EecCCCHHHHHhcCEEE-EEcCCCEEEEECCcc
Confidence 9993 2 346799996 59987 999999874
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-29 Score=231.80 Aligned_cols=175 Identities=17% Similarity=0.191 Sum_probs=134.4
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceee
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 180 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~ 180 (361)
++|+++ |||+||+|++++++|||||||||++|+|+|++. |++|.|.++|.+... ++..
T Consensus 37 ~~AVqd---isf~IP~G~ivgflGaNGAGKSTtLKmLTGll~-----p~~G~v~V~G~~Pf~----~~~~---------- 94 (325)
T COG4586 37 IEAVQD---ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-----PTSGKVRVNGKDPFR----RREE---------- 94 (325)
T ss_pred hhhhhe---eeeecCCCcEEEEEcCCCCcchhhHHHHhCccc-----cCCCeEEecCcCcch----hHHH----------
Confidence 467555 999999999999999999999999999999999 999999999976531 0000
Q ss_pred eecCCCCccc--------ccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechh
Q 018083 181 YDTRSLSDDA--------SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA 252 (361)
Q Consensus 181 ~d~r~~i~~v--------~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~ 252 (361)
..+.+++| ++.+.+-...+.+.|. ..+.+..+++...+-+.+++++
T Consensus 95 --~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy-------~Ipd~~F~~r~~~l~eiLdl~~----------------- 148 (325)
T COG4586 95 --YLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY-------EIPDDEFAERLDFLTEILDLEG----------------- 148 (325)
T ss_pred --HHHHHHHHhhhhheeeeechhhhhHHHHHHHH-------hCCHHHHHHHHHHHHHHhcchh-----------------
Confidence 00011111 1112111112222222 3455777888888999999988
Q ss_pred hhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cccccccchhh
Q 018083 253 VLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRAR 304 (361)
Q Consensus 253 ~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~ 304 (361)
+++.+.+.||-|||.|+.||.|| ||||.+||- +.||++.|| +++.++||||+
T Consensus 149 ~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~ 228 (325)
T COG4586 149 FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVL 228 (325)
T ss_pred hhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheE
Confidence 45899999999999999999998 999999752 999999999 89999999996
Q ss_pred HhhhhhhhcCCCCccccccC
Q 018083 305 IRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 305 vvl~~G~iv~~g~~~~i~~~ 324 (361)
.++.|+++.+|+.+++..+
T Consensus 229 -~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 229 -LIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred -EeeCCcEeecccHHHHHHH
Confidence 5999999999888776443
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-29 Score=282.17 Aligned_cols=210 Identities=15% Similarity=0.071 Sum_probs=150.6
Q ss_pred hhhHHHHHHHHhHHHHHhh---hccccccccceeeecCc-------------------------------ceeeccccce
Q 018083 63 RRDAVFREVLQSYDQLRTR---IGSLTDAKNKILSYTPG-------------------------------AWIENVGGMT 108 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~---~~~~lei~nl~~~Y~~~-------------------------------~~~~~l~~L~ 108 (361)
....|++++|+.++..... ....++++|+++.|... .+.++ |+
T Consensus 367 ~s~~RI~~fL~~~e~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~---l~ 443 (1490)
T TIGR01271 367 GAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPV---LK 443 (1490)
T ss_pred HHHHHHHHHhcCcccccccccCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcc---ee
Confidence 3445999999754321111 12248889999988421 01135 66
Q ss_pred eccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCc
Q 018083 109 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 188 (361)
Q Consensus 109 ~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~ 188 (361)
|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .++
T Consensus 444 ~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-----~~~G~i~~~g----------------------------~ia 490 (1490)
T TIGR01271 444 NISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-----PSEGKIKHSG----------------------------RIS 490 (1490)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECC----------------------------EEE
Confidence 6999999999999999999999999999999999 9999999876 156
Q ss_pred ccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhh
Q 018083 189 DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 268 (361)
Q Consensus 189 ~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQR 268 (361)
|++|++.+++.++.+||.++... +.. +..++++..++.+.+...++..-+ .....+..||||||||
T Consensus 491 yv~Q~~~l~~~Ti~eNI~~g~~~----~~~----~~~~~~~~~~L~~~l~~l~~g~~t------~vg~~g~~LSgGqkqR 556 (1490)
T TIGR01271 491 FSPQTSWIMPGTIKDNIIFGLSY----DEY----RYTSVIKACQLEEDIALFPEKDKT------VLGEGGITLSGGQRAR 556 (1490)
T ss_pred EEeCCCccCCccHHHHHHhcccc----chH----HHHHHHHHHhHHHHHHhccccccc------cccCcCCCcCHHHHHH
Confidence 78888888888999999987531 111 122223333333221111111111 2255678999999999
Q ss_pred hhhhhcc---------CCCceeecC----------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccc
Q 018083 269 QIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIF 322 (361)
Q Consensus 269 vaIArAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~ 322 (361)
++||||+ |||+++||. ++|+|++|| ......||+|+ +|++|++++.|+++++.
T Consensus 557 i~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii-~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 557 ISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKIL-LLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEE-EEECCEEEEEcCHHHHH
Confidence 9999999 999999753 789999999 33345699995 59999999999988776
Q ss_pred c
Q 018083 323 D 323 (361)
Q Consensus 323 ~ 323 (361)
.
T Consensus 636 ~ 636 (1490)
T TIGR01271 636 A 636 (1490)
T ss_pred h
Confidence 4
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-28 Score=209.40 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=101.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|++++|++. ++ |+++||++++||+++|+||||||||||+++|+|+++ |++|+|+++|..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~~~~------ 63 (144)
T cd03221 1 IELENLSKTYGGK---LL---LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-----PDEGIVTWGSTV------ 63 (144)
T ss_pred CEEEEEEEEECCc---eE---EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCeE------
Confidence 4689999999753 35 666999999999999999999999999999999999 999999987620
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.++|++|
T Consensus 64 --------------------~i~~~~~----------------------------------------------------- 70 (144)
T cd03221 64 --------------------KIGYFEQ----------------------------------------------------- 70 (144)
T ss_pred --------------------EEEEEcc-----------------------------------------------------
Confidence 0111111
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cccccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSLTD 301 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~~~aD 301 (361)
||+||+||++||||| |||+++||. +.|+|++|| +.+..+||
T Consensus 71 ---------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d 135 (144)
T cd03221 71 ---------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVAT 135 (144)
T ss_pred ---------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCC
Confidence 999999999999999 999999763 789999999 56778899
Q ss_pred hhhHhhhhhh
Q 018083 302 RARIRTYLGE 311 (361)
Q Consensus 302 ri~vvl~~G~ 311 (361)
+++ +|++|+
T Consensus 136 ~v~-~l~~g~ 144 (144)
T cd03221 136 KII-ELEDGK 144 (144)
T ss_pred EEE-EEeCCC
Confidence 995 588875
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-28 Score=252.30 Aligned_cols=173 Identities=16% Similarity=0.141 Sum_probs=128.7
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee-----------ecc
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 157 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~-----------i~G 157 (361)
++++++|+... .+ |++++ .+++|++++|+||||||||||+|+|+|+++ |++|+|. ++|
T Consensus 77 ~~~~~~yg~~~--~~---L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~~~~~~~G 145 (590)
T PRK13409 77 EEPVHRYGVNG--FK---LYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-----PNLGDYEEEPSWDEVLKRFRG 145 (590)
T ss_pred cCceEEecCCc--ee---EecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCccccCCCcHHHHHHHhCC
Confidence 44899998643 35 66699 899999999999999999999999999999 9999997 888
Q ss_pred cccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 158 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 158 ~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
.++.. +.. .+.. ........+.++++.+.++..++.+++.. ...++++.++++.+++..
T Consensus 146 ~~l~~-~~~---~~~~-----~~~~~~~~~q~~~~~p~~~~~tv~e~l~~----------~~~~~~~~~~l~~l~l~~-- 204 (590)
T PRK13409 146 TELQN-YFK---KLYN-----GEIKVVHKPQYVDLIPKVFKGKVRELLKK----------VDERGKLDEVVERLGLEN-- 204 (590)
T ss_pred hHHHH-HHH---HHhc-----cCcceeecccchhhhhhhhcchHHHHHHh----------hhHHHHHHHHHHHcCCch--
Confidence 77641 100 0000 00000112344455555555577777652 123456788899999976
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH 293 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH 293 (361)
.+++.+.+||||||||++||+|| ||||++||. ++|||+|||
T Consensus 205 ---------------~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsH 269 (590)
T PRK13409 205 ---------------ILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEH 269 (590)
T ss_pred ---------------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 45899999999999999999999 999999752 789999999
Q ss_pred --CccccccchhhHhhhh
Q 018083 294 --GDLLSLTDRARIRTYL 309 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~ 309 (361)
+.+..+||++. +|++
T Consensus 270 d~~~l~~~~D~v~-vl~~ 286 (590)
T PRK13409 270 DLAVLDYLADNVH-IAYG 286 (590)
T ss_pred CHHHHHHhCCEEE-EEeC
Confidence 56778999995 4865
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-28 Score=274.81 Aligned_cols=185 Identities=13% Similarity=0.071 Sum_probs=139.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+|+|+++++||+++|+||||||||||+|+|+|+.... ..|++|+|.++|+++.. .. ...++.
T Consensus 77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~-~~~~~G~I~~~G~~~~~---------------~~-~~~r~~ 139 (1394)
T TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGF-HIGVEGVITYDGITPEE---------------IK-KHYRGD 139 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-CCCceeEEEECCEehHH---------------HH-hhcCce
Confidence 66699999999999999999999999999999986310 01789999999987641 11 123456
Q ss_pred CcccccchHHHHH-HHHhccccceeEEec------CCChhhhhh-hcccccccCCCcceeEEEEEEEEEEechhhhhhcc
Q 018083 187 SDDASDNINMIKL-WIMEGVRHGELVIRR------SDSSSLRNR-MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME 258 (361)
Q Consensus 187 i~~v~q~~~l~~~-ti~~ni~~~~~~~~~------~~~~~~~~~-v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~ 258 (361)
++|++|+..+++. ++.+++.++...... ..+++..++ ++.+++.+||.+... ..+.+.++
T Consensus 140 i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~------------t~vg~~~~ 207 (1394)
T TIGR00956 140 VVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRN------------TKVGNDFV 207 (1394)
T ss_pred eEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccC------------ceeCCCcC
Confidence 8889998777776 999999886542211 111222223 355788999976210 00124456
Q ss_pred CCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEcC---ccccccchhhHhhhh
Q 018083 259 GDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG---DLLSLTDRARIRTYL 309 (361)
Q Consensus 259 ~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH~---~~~~~aDri~vvl~~ 309 (361)
.+||||||||++||+|| ||||++||. |+|||+++|+ .+..++|+++ +|++
T Consensus 208 ~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~-~L~~ 286 (1394)
T TIGR00956 208 RGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVI-VLYE 286 (1394)
T ss_pred CCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEE-EEeC
Confidence 78999999999999998 999999753 7899999993 4678999996 5999
Q ss_pred hhhcCCCCcccc
Q 018083 310 GELLGIPPAKQI 321 (361)
Q Consensus 310 G~iv~~g~~~~i 321 (361)
|+++..|+++++
T Consensus 287 G~iv~~G~~~~~ 298 (1394)
T TIGR00956 287 GYQIYFGPADKA 298 (1394)
T ss_pred CeEEEECCHHHH
Confidence 999999999877
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-27 Score=270.98 Aligned_cols=192 Identities=10% Similarity=0.044 Sum_probs=147.5
Q ss_pred ccccccceeeecCc----------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee
Q 018083 85 LTDAKNKILSYTPG----------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 154 (361)
Q Consensus 85 ~lei~nl~~~Y~~~----------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~ 154 (361)
.+.++||++..+.. ...++ |++||++|++|++++|+||||||||||+++|+|..+.+ +.+|+|.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~i---L~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g---~~~G~I~ 940 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQL---LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIR 940 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceE---eeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC---cccceEE
Confidence 48899999886411 11246 56699999999999999999999999999999987622 3689999
Q ss_pred ecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe--cCCChhhhhhhccccccc
Q 018083 155 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR--RSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 155 i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~--~~~~~~~~~~v~~~l~~~ 231 (361)
++|.+.. . ...++.++||+|+..+++. ++.+++.++..... ..+.++..+.++++++.+
T Consensus 941 inG~~~~---------------~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~l 1002 (1470)
T PLN03140 941 ISGFPKK---------------Q---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELV 1002 (1470)
T ss_pred ECCccCC---------------h---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHC
Confidence 9997653 0 1123457889998777666 99999988643211 112233445688899999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhcc-----CCchhhhhhhhhhhhcc---------CCCceeecC-------------
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSME-----GDSDVEKQYNQIVATTF---------NCPYLSFRD------------- 284 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~-----~~LSGGqrQRvaIArAL---------DEPt~~L~~------------- 284 (361)
+|.+ .++..+ .+||||||||++||++| ||||++||.
T Consensus 1003 gL~~-----------------~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l 1065 (1470)
T PLN03140 1003 ELDN-----------------LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1065 (1470)
T ss_pred CChh-----------------HhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9976 335554 58999999999999999 999999763
Q ss_pred ---CccEEEEEc--C-ccccccchhhHhhhh-hhhcCCCCc
Q 018083 285 ---DKPVVVVTH--G-DLLSLTDRARIRTYL-GELLGIPPA 318 (361)
Q Consensus 285 ---g~tvIiiTH--~-~~~~~aDri~vvl~~-G~iv~~g~~ 318 (361)
|+|||++|| . ++...||+++ +|++ |+++..|++
T Consensus 1066 ~~~g~tVI~t~Hq~~~~i~~~~D~vl-lL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1066 VDTGRTVVCTIHQPSIDIFEAFDELL-LMKRGGQVIYSGPL 1105 (1470)
T ss_pred HHCCCEEEEEeCCCCHHHHHhCCEEE-EEcCCCEEEEECCc
Confidence 899999999 3 3568899996 5986 899998886
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-27 Score=270.37 Aligned_cols=195 Identities=15% Similarity=0.136 Sum_probs=147.0
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc---cceeeecccccCcceEeEeeeecCCCcceeeeec
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 183 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~---~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~ 183 (361)
|+|+|+.|++|++++|+||||||||||+|+|+|.++ |+ +|+|.++|.++. .+. .
T Consensus 181 L~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-----~~~~~~G~I~~nG~~~~---------------~~~---~ 237 (1470)
T PLN03140 181 LKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGEITYNGYRLN---------------EFV---P 237 (1470)
T ss_pred ccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCcceeEEEECCEech---------------hhc---c
Confidence 566999999999999999999999999999999998 77 999999998764 111 1
Q ss_pred CCCCcccccchHHHHH-HHHhccccceeEEecC---------CChhh------------------------hhhhccccc
Q 018083 184 RSLSDDASDNINMIKL-WIMEGVRHGELVIRRS---------DSSSL------------------------RNRMRCKAH 229 (361)
Q Consensus 184 r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~---------~~~~~------------------------~~~v~~~l~ 229 (361)
++.++||+|+..+++. ++.+++.++....... .+.+. ...+..+++
T Consensus 238 ~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~ 317 (1470)
T PLN03140 238 RKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLK 317 (1470)
T ss_pred cceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567889998777766 9999998865422100 00110 012355788
Q ss_pred ccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------
Q 018083 230 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 284 (361)
Q Consensus 230 ~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------- 284 (361)
.+||.+.. ... +.++++.+||||||||++||++| ||||+|||.
T Consensus 318 ~lGL~~~~-------~t~-----vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~ 385 (1470)
T PLN03140 318 ILGLDICK-------DTI-----VGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL 385 (1470)
T ss_pred HcCCcccc-------Cce-----eCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHh
Confidence 89987511 000 23667889999999999999998 999999763
Q ss_pred -CccEEEEEc---CccccccchhhHhhhhhhhcCCCCccccc--------cCCCCCCCCchhhhh
Q 018083 285 -DKPVVVVTH---GDLLSLTDRARIRTYLGELLGIPPAKQIF--------DIPESSDPENELIIV 337 (361)
Q Consensus 285 -g~tvIiiTH---~~~~~~aDri~vvl~~G~iv~~g~~~~i~--------~~~~~~~~~~~~~~~ 337 (361)
|+|+|+++| .++..++|+|+ +|++|+++..|+++++. ..|....+++++..+
T Consensus 386 ~g~Tviis~Hqp~~~i~~lfD~vi-lL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v 449 (1470)
T PLN03140 386 TEATVLMSLLQPAPETFDLFDDII-LLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEV 449 (1470)
T ss_pred cCCEEEEEecCCCHHHHHHhheEE-EeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHh
Confidence 789999999 26778999996 59999999999998774 445555555555543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-27 Score=253.35 Aligned_cols=207 Identities=10% Similarity=0.000 Sum_probs=134.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. .+ |+++||+|++|+++|||||||||||||+++|+|..... .|.+|+|.+.++.+.+ .
T Consensus 177 ~I~i~nls~~y~~~---~l---l~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g--~p~~g~I~~~~Q~~~g-~ 247 (718)
T PLN03073 177 DIHMENFSISVGGR---DL---IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDG--IPKNCQILHVEQEVVG-D 247 (718)
T ss_pred eEEEceEEEEeCCC---EE---EECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCCCCEEEEEeccCCC-C
Confidence 69999999999753 35 66699999999999999999999999999999975211 2889999877665321 0
Q ss_pred EeEeee-ecCCCcceeeee-cCCCCcccccchHHHHHHHHhccccceeEEecCCCh-------------------hhhhh
Q 018083 165 FLQEYT-IPRGSNSFSLYD-TRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSS-------------------SLRNR 223 (361)
Q Consensus 165 ~~~~~~-i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~-------------------~~~~~ 223 (361)
...... +... ...... .+..+++++|++.+.......+...... ...+.. ..+.+
T Consensus 248 ~~t~~~~v~~~--~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 248 DTTALQCVLNT--DIERTQLLEEEAQLVAQQRELEFETETGKGKGANK--DGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCCHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhhhcccccccccccc--cccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 000000 0000 000000 0112344455443322222222211000 011111 23455
Q ss_pred hcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------
Q 018083 224 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------- 284 (361)
Q Consensus 224 v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------- 284 (361)
+..++..+|+.+. .+++++.+||||||||++||||| ||||++||.
T Consensus 324 ~~~~L~~lgl~~~----------------~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L 387 (718)
T PLN03073 324 AASILAGLSFTPE----------------MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL 387 (718)
T ss_pred HHHHHHHCCCChH----------------HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 6667777888532 24788999999999999999999 999999864
Q ss_pred ---CccEEEEEc--CccccccchhhHhhhhhhhc-CCCCcccc
Q 018083 285 ---DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQI 321 (361)
Q Consensus 285 ---g~tvIiiTH--~~~~~~aDri~vvl~~G~iv-~~g~~~~i 321 (361)
+.|||+||| +.+..+||+++ +|++|++. ..|+...+
T Consensus 388 ~~~~~tviivsHd~~~l~~~~d~i~-~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 388 LKWPKTFIVVSHAREFLNTVVTDIL-HLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHcCCEEEEEECCHHHHHHhCCEEE-EEECCEEEEeCCCHHHH
Confidence 789999999 56778899996 59999996 56665443
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-26 Score=202.65 Aligned_cols=130 Identities=19% Similarity=0.258 Sum_probs=101.0
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
+++++++.|.+. .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 ~~~~~~~~~~~~---~~---l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-----~~~G~i~~~~~~~~~---- 65 (157)
T cd00267 1 EIENLSFRYGGR---TA---LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-----PTSGEILIDGKDIAK---- 65 (157)
T ss_pred CeEEEEEEeCCe---ee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEccc----
Confidence 367899999653 45 666999999999999999999999999999999999 999999999866530
Q ss_pred EeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEE
Q 018083 167 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 246 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~ 246 (361)
......... +++
T Consensus 66 -----------~~~~~~~~~--------------------------------------------i~~------------- 77 (157)
T cd00267 66 -----------LPLEELRRR--------------------------------------------IGY------------- 77 (157)
T ss_pred -----------CCHHHHHhc--------------------------------------------eEE-------------
Confidence 000000000 001
Q ss_pred EEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccccc
Q 018083 247 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSL 299 (361)
Q Consensus 247 vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~~~ 299 (361)
..+||+||+||++||||| |||+++||. ++|+|++|| ..+..+
T Consensus 78 -----------~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 78 -----------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred -----------EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 012999999999999999 999999753 589999999 567788
Q ss_pred cchhhHhhhhhh
Q 018083 300 TDRARIRTYLGE 311 (361)
Q Consensus 300 aDri~vvl~~G~ 311 (361)
||+++ ++++|+
T Consensus 147 ~d~i~-~l~~g~ 157 (157)
T cd00267 147 ADRVI-VLKDGK 157 (157)
T ss_pred CCEEE-EEeCcC
Confidence 89996 487764
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-26 Score=214.14 Aligned_cols=171 Identities=14% Similarity=0.159 Sum_probs=132.2
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceee
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 180 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~ 180 (361)
.+| |+||||+|++||.+||||+||||||||+|+|+|+++ |++|+|.++|+-.. +
T Consensus 40 ~~a---L~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~-----Pt~G~v~v~G~v~~------------------l 93 (249)
T COG1134 40 FWA---LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-----PTSGKVKVTGKVAP------------------L 93 (249)
T ss_pred EEE---ecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC-----CCCceEEEcceEeh------------------h
Confidence 567 555999999999999999999999999999999999 99999999985422 0
Q ss_pred eecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCC
Q 018083 181 YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 260 (361)
Q Consensus 181 ~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~ 260 (361)
.+.- .++-+| .|-++||.+..... +..+++.++++++..+..+|.+ +.+.+...
T Consensus 94 i~lg--~Gf~pe------lTGreNi~l~~~~~-G~~~~ei~~~~~eIieFaELG~-----------------fi~~Pvkt 147 (249)
T COG1134 94 IELG--AGFDPE------LTGRENIYLRGLIL-GLTRKEIDEKVDEIIEFAELGD-----------------FIDQPVKT 147 (249)
T ss_pred hhcc--cCCCcc------cchHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHH-----------------HhhCchhh
Confidence 0000 111111 02334444322211 3446788889999999999998 56999999
Q ss_pred chhhhhhhhhhhhcc---------CCCceee----------------cCCccEEEEEc--CccccccchhhHhhhhhhhc
Q 018083 261 SDVEKQYNQIVATTF---------NCPYLSF----------------RDDKPVVVVTH--GDLLSLTDRARIRTYLGELL 313 (361)
Q Consensus 261 LSGGqrQRvaIArAL---------DEPt~~L----------------~~g~tvIiiTH--~~~~~~aDri~vvl~~G~iv 313 (361)
+|.||+-|++.|-|. ||-.+.- ..+.|||+||| +.+.++|||++ +|++|++.
T Consensus 148 YSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i-~l~~G~i~ 226 (249)
T COG1134 148 YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAI-WLEHGQIR 226 (249)
T ss_pred ccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeE-EEeCCEEE
Confidence 999999999999998 6655541 23899999999 57889999995 59999999
Q ss_pred CCCCccccccC
Q 018083 314 GIPPAKQIFDI 324 (361)
Q Consensus 314 ~~g~~~~i~~~ 324 (361)
..|++++++..
T Consensus 227 ~~G~~~~vi~~ 237 (249)
T COG1134 227 MEGSPEEVIPA 237 (249)
T ss_pred EcCCHHHHHHH
Confidence 99999988764
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-26 Score=204.70 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=100.5
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEe
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 168 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 168 (361)
.|++++|++. .+ ++++ |+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++
T Consensus 4 ~~l~~~~~~~---~~---l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i-------- 63 (177)
T cd03222 4 PDCVKRYGVF---FL---LVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-----PNGDNDEWDGITP-------- 63 (177)
T ss_pred CCeEEEECCE---EE---EccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCcEEEECCEEE--------
Confidence 6899999763 45 5555 8999999999999999999999999999999 9999999987321
Q ss_pred eeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEE
Q 018083 169 YTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVV 248 (361)
Q Consensus 169 ~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv 248 (361)
++++|+.
T Consensus 64 -------------------~~~~q~~------------------------------------------------------ 70 (177)
T cd03222 64 -------------------VYKPQYI------------------------------------------------------ 70 (177)
T ss_pred -------------------EEEcccC------------------------------------------------------
Confidence 1111110
Q ss_pred echhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------C-ccEEEEEc--Ccccccc
Q 018083 249 DGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVTH--GDLLSLT 300 (361)
Q Consensus 249 ~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g-~tvIiiTH--~~~~~~a 300 (361)
. ||||||||++||||| |||+++||. + .|||++|| ..+..+|
T Consensus 71 ------~-----LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~ 139 (177)
T cd03222 71 ------D-----LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS 139 (177)
T ss_pred ------C-----CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC
Confidence 0 999999999999999 999999752 3 89999999 4677889
Q ss_pred chhhHhhhhhhhcCCCCccccccCCC
Q 018083 301 DRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 301 Dri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|+++ +|+++-. ..++|..|.
T Consensus 140 d~i~-~l~~~~~-----~~~~~~~~~ 159 (177)
T cd03222 140 DRIH-VFEGEPG-----VYGIASQPK 159 (177)
T ss_pred CEEE-EEcCCCc-----cceeccCCc
Confidence 9995 4776533 335555554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-27 Score=266.29 Aligned_cols=170 Identities=13% Similarity=0.083 Sum_probs=127.3
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+. ..
T Consensus 676 L~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-----~~~G~i~~~----------------------------~~ 722 (1560)
T PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-----ISEGRVWAE----------------------------RS 722 (1560)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEEC----------------------------Ce
Confidence 666999999999999999999999999999999999 999998752 23
Q ss_pred CcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhh
Q 018083 187 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 266 (361)
Q Consensus 187 i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 266 (361)
++|++|++.++..++.+||.++... ..++..++++..++.+.+...++.. ....++++.+||||||
T Consensus 723 i~yv~Q~~~l~~~Tv~enI~~~~~~--------~~~~~~~~~~~~~l~~~l~~l~~g~------~t~i~~~g~~LSGGQk 788 (1560)
T PTZ00243 723 IAYVPQQAWIMNATVRGNILFFDEE--------DAARLADAVRVSQLEADLAQLGGGL------ETEIGEKGVNLSGGQK 788 (1560)
T ss_pred EEEEeCCCccCCCcHHHHHHcCChh--------hHHHHHHHHHHhhhHHHHHHhhccc------hHHhcCCCCCCCHHHH
Confidence 6788888888777999999975321 1112222233222221110000000 0023677889999999
Q ss_pred hhhhhhhcc---------CCCceeecC----------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccc
Q 018083 267 YNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQ 320 (361)
Q Consensus 267 QRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~ 320 (361)
||++||||| |||+++||. |+|+|++|| ......||+|+ +|++|++++.|++++
T Consensus 789 qRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii-~l~~G~i~~~G~~~~ 867 (1560)
T PTZ00243 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVV-ALGDGRVEFSGSSAD 867 (1560)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE-EEECCEEEEecCHHH
Confidence 999999999 999999763 789999999 34456799995 599999999999988
Q ss_pred cccC
Q 018083 321 IFDI 324 (361)
Q Consensus 321 i~~~ 324 (361)
++..
T Consensus 868 l~~~ 871 (1560)
T PTZ00243 868 FMRT 871 (1560)
T ss_pred HHhC
Confidence 7653
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-26 Score=203.57 Aligned_cols=134 Identities=19% Similarity=0.150 Sum_probs=98.0
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceee
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 180 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~ 180 (361)
.++ |+++||+|++|++++|+||||||||||+|+|. +++|++.++|.... +
T Consensus 8 ~~~---l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il---------~~~G~v~~~~~~~~----------------~-- 57 (176)
T cd03238 8 VHN---LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---------YASGKARLISFLPK----------------F-- 57 (176)
T ss_pred eee---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHh---------hcCCcEEECCcccc----------------c--
Confidence 456 55599999999999999999999999999883 24799988764211 0
Q ss_pred eecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCC
Q 018083 181 YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 260 (361)
Q Consensus 181 ~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~ 260 (361)
.+..+.+++| .++++.+++... .+++++.+
T Consensus 58 --~~~~~~~~~q--------------------------------~~~l~~~~L~~~----------------~~~~~~~~ 87 (176)
T cd03238 58 --SRNKLIFIDQ--------------------------------LQFLIDVGLGYL----------------TLGQKLST 87 (176)
T ss_pred --ccccEEEEhH--------------------------------HHHHHHcCCCcc----------------ccCCCcCc
Confidence 0111222333 134666777542 13788999
Q ss_pred chhhhhhhhhhhhcc-----------CCCceeecC----------------CccEEEEEc-CccccccchhhHhhhhhhh
Q 018083 261 SDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGEL 312 (361)
Q Consensus 261 LSGGqrQRvaIArAL-----------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~vvl~~G~i 312 (361)
||||||||++||||| |||+++||. |+|||++|| ......||+++ +|.+|+.
T Consensus 88 LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~-~l~~g~~ 166 (176)
T cd03238 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWII-DFGPGSG 166 (176)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE-EECCCCC
Confidence 999999999999998 999999642 899999999 33346799995 5977655
Q ss_pred cCC
Q 018083 313 LGI 315 (361)
Q Consensus 313 v~~ 315 (361)
.-.
T Consensus 167 ~~~ 169 (176)
T cd03238 167 KSG 169 (176)
T ss_pred CCC
Confidence 333
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-26 Score=197.64 Aligned_cols=127 Identities=13% Similarity=0.196 Sum_probs=99.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|.|.++|.++. .......+..
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-----~~~G~i~~~~~~~~---------------~~~~~~~~~~ 60 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-----PDSGSILINGKDIS---------------DIDIEELRRR 60 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-----ESEEEEEETTEEGT---------------TSHHHHHHHT
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-----cccccccccccccc---------------cccccccccc
Confidence 567999999999999999999999999999999999 99999999998886 2233345567
Q ss_pred CcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhh
Q 018083 187 SDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 265 (361)
Q Consensus 187 i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 265 (361)
+++++|+..++.. ++.+| ...+++.++++.+++.+.. ....++.+.+||+||
T Consensus 61 i~~~~~~~~~~~~~tv~~~--------------~~~~~~~~~l~~l~~~~~~-------------~~~~~~~~~~LS~Ge 113 (137)
T PF00005_consen 61 IGYVPQDPQLFPGLTVREN--------------ESDERIEEVLKKLGLEDLL-------------DRKIGQRASSLSGGE 113 (137)
T ss_dssp EEEEESSHCHHTTSBHHHH--------------HHHHHHHHHHHHTTHGGGT-------------GSBGTSCGGGSCHHH
T ss_pred ccccccccccccccccccc--------------ccccccccccccccccccc-------------ccccccccchhhHHH
Confidence 7888999777766 46655 2334566677777765511 002355569999999
Q ss_pred hhhhhhhhcc---------CCCce
Q 018083 266 QYNQIVATTF---------NCPYL 280 (361)
Q Consensus 266 rQRvaIArAL---------DEPt~ 280 (361)
|||++||||| ||||+
T Consensus 114 ~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 114 KQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHTTSSEEEEESTTT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9999999999 88874
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-26 Score=236.43 Aligned_cols=199 Identities=17% Similarity=0.142 Sum_probs=132.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+.+|+++++++.|+++ .+ |+++||+|.+|+++||||+||||||||+|+|+|.+. |++|+|...+. ...
T Consensus 1 m~~i~~~~ls~~~g~~---~l---~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-----~~~G~i~~~~~-~~v 68 (530)
T COG0488 1 MSMITLENLSLAYGDR---PL---LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-----PDSGEVTRPKG-LRV 68 (530)
T ss_pred CceEEEeeeEEeeCCc---ee---ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-----CCCCeEeecCC-ceE
Confidence 4579999999999764 44 666999999999999999999999999999999999 99999998753 223
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH-H---HHH--HHHhccccc------ee--EEecCCChhhhhhhcccc
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-M---IKL--WIMEGVRHG------EL--VIRRSDSSSLRNRMRCKA 228 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l---~~~--ti~~ni~~~------~~--~~~~~~~~~~~~~v~~~l 228 (361)
++..|.... .+......+|.+... + ... .+....... .. .....+.-..+.++..++
T Consensus 69 ~~l~Q~~~~---------~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L 139 (530)
T COG0488 69 GYLSQEPPL---------DPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL 139 (530)
T ss_pred EEeCCCCCc---------CCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 333333221 111111111111100 0 000 000000000 00 000011123346677788
Q ss_pred cccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--------------C
Q 018083 229 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------------D 285 (361)
Q Consensus 229 ~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--------------g 285 (361)
..+|+.+ . +++..+||||||.|++||+|| ||||..||- |
T Consensus 140 ~gLg~~~-----------------~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g 201 (530)
T COG0488 140 LGLGFPD-----------------E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG 201 (530)
T ss_pred hcCCCCc-----------------c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC
Confidence 8888887 2 678899999999999999999 999999752 6
Q ss_pred ccEEEEEc--CccccccchhhHhhhhhhhcC-CCCccccc
Q 018083 286 KPVVVVTH--GDLLSLTDRARIRTYLGELLG-IPPAKQIF 322 (361)
Q Consensus 286 ~tvIiiTH--~~~~~~aDri~vvl~~G~iv~-~g~~~~i~ 322 (361)
|+|+||| ..+-..|++|+ -++.|++.. .|.-+...
T Consensus 202 -tviiVSHDR~FLd~V~t~I~-~ld~g~l~~y~Gny~~~~ 239 (530)
T COG0488 202 -TVIVVSHDRYFLDNVATHIL-ELDRGKLTPYKGNYSSYL 239 (530)
T ss_pred -cEEEEeCCHHHHHHHhhheE-EecCCceeEecCCHHHHH
Confidence 9999999 47779999995 699998754 35444333
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-26 Score=239.44 Aligned_cols=196 Identities=17% Similarity=0.203 Sum_probs=158.5
Q ss_pred ccccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.+.+++++....... ..++ |++||.++++||++||+||||||||||+++|+|-...+. ..+|+|.+||+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~i---L~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~--~~~G~ilvNG~~~~- 98 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTI---LKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGL--KLSGEILLNGRPRD- 98 (613)
T ss_pred eeEEEEEEEEecCCCCcccee---eeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCC--cceEEEEECCccCc-
Confidence 366778777765431 2356 555999999999999999999999999999999997443 58999999996543
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec--CCChhhhhhhcccccccCCCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~--~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
....+...+||.|+-.+++. ||.|.+.+....... .+.++.+++++++++.+|+..
T Consensus 99 -----------------~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~---- 157 (613)
T KOG0061|consen 99 -----------------SRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK---- 157 (613)
T ss_pred -----------------hhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh----
Confidence 12234567899999888887 999999987654322 255788899999999999985
Q ss_pred EEEEEEEEEechhhhhhccC-----Cchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 240 KVNFVIFVVDGLAVLKSMEG-----DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~-----~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
..+...+ .+|||||+|++||.-| ||||+|||. |+|||
T Consensus 158 -------------~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi 224 (613)
T KOG0061|consen 158 -------------CADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVI 224 (613)
T ss_pred -------------hccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEE
Confidence 3355554 6999999999999987 999999763 99999
Q ss_pred EEEc---CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 290 VVTH---GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 290 iiTH---~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
++-| ..+..+.|+++ +|..|+++..|+++++
T Consensus 225 ~tIHQPss~lf~lFD~l~-lLs~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 225 CTIHQPSSELFELFDKLL-LLSEGEVVYSGSPREL 258 (613)
T ss_pred EEEeCCcHHHHHHHhHhh-hhcCCcEEEecCHHHH
Confidence 9999 46778999996 5999999999999865
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-26 Score=205.93 Aligned_cols=221 Identities=13% Similarity=0.188 Sum_probs=170.0
Q ss_pred ccccccccceeeec-CcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 83 GSLTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 83 ~~~lei~nl~~~Y~-~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
|+++.++||+..+. +.++++++++ +|+++++||+-+|||+||||||-..|+|+|+.++++. .+.-...+++.++.
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~---v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~-vTADR~Rf~~idLL 76 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDR---VSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWR-VTADRMRFDDIDLL 76 (330)
T ss_pred CCcccccceEEEEecCCCceEeeee---eeeeeccceeeeeeccCCCchhHHHHHHhcccccceE-EEhhhcccccchhh
Confidence 57899999999984 3345789777 9999999999999999999999999999999997764 45567777776654
Q ss_pred cceEeEeeeecCCCcceeeeecCC----CCcccccchHHH--HH-HHHhccccceeEEec-----CCChhhhhhhccccc
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRS----LSDDASDNINMI--KL-WIMEGVRHGELVIRR-----SDSSSLRNRMRCKAH 229 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~----~i~~v~q~~~l~--~~-ti~~ni~~~~~~~~~-----~~~~~~~~~v~~~l~ 229 (361)
. ......|. .++++||++.-. +. .|...+..+.+.... ......++++.++|+
T Consensus 77 ~---------------L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLH 141 (330)
T COG4170 77 R---------------LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLH 141 (330)
T ss_pred c---------------CChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHH
Confidence 1 22222222 346678887532 22 555544443332111 111334677889999
Q ss_pred ccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------
Q 018083 230 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 284 (361)
Q Consensus 230 ~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------- 284 (361)
++|+.+ .++.+.++|.+|..|+-|+|+||.|+ ||||.++++
T Consensus 142 rVGIKd--------------HkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn 207 (330)
T COG4170 142 RVGIKD--------------HKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQN 207 (330)
T ss_pred Hhcccc--------------HHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhcc
Confidence 999976 33478999999999999999999998 999988532
Q ss_pred -CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhh
Q 018083 285 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 337 (361)
Q Consensus 285 -g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~ 337 (361)
++||++++| ..+.++||+|.| |+.|+-++.+++++++..|.|+|++.++.++
T Consensus 208 ~~TtILL~s~Dl~~is~W~d~i~V-lYCGQ~~ESa~~e~l~~~PhHPYTqALi~a~ 262 (330)
T COG4170 208 SNTTILLISHDLQMISQWADKINV-LYCGQTVESAPSEELVTMPHHPYTQALIRAI 262 (330)
T ss_pred CCceEEEEcccHHHHHHHhhheEE-EEecccccccchhHHhcCCCCchHHHHHHhC
Confidence 899999999 467799999985 9999999999999999999999987766554
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-26 Score=201.15 Aligned_cols=188 Identities=18% Similarity=0.171 Sum_probs=142.1
Q ss_pred ccccccceeeec----CcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 85 LTDAKNKILSYT----PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 85 ~lei~nl~~~Y~----~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
.|.++|++|+|. ++-..++ ++++||+|+.||+++|-||||||||||+|+|.+-|. |++|+|++.-..-
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV---~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-----~d~G~I~v~H~g~ 75 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPV---LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-----PDEGQILVRHEGE 75 (235)
T ss_pred eeeeecchhheEeeecCCEEeee---eeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-----CCCceEEEEeCcc
Confidence 588999999884 2323566 555999999999999999999999999999999999 9999999875442
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
.......+ + .-.+.-.+..+|||.|.....|. ...+-++.++.. ++.+.+..+.++..++.++.+...
T Consensus 76 ~vdl~~a~---p----r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~-~gv~~~~a~~~a~~Ll~rLnlper--- 144 (235)
T COG4778 76 WVDLVTAE---P----REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA-RGVPREVARAKAADLLTRLNLPER--- 144 (235)
T ss_pred hhhhhccC---h----HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCCCHH---
Confidence 21000000 0 01122234568999888776666 445555555442 345667788899999999999875
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcC
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG 294 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~ 294 (361)
++.-.|.++|||+||||-|||.+ ||||++||. |..+|=|-|+
T Consensus 145 -------------LW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD 211 (235)
T COG4778 145 -------------LWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD 211 (235)
T ss_pred -------------HhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc
Confidence 57889999999999999999998 999999863 8999999994
Q ss_pred -ccc-cccchhh
Q 018083 295 -DLL-SLTDRAR 304 (361)
Q Consensus 295 -~~~-~~aDri~ 304 (361)
++. ..|||+.
T Consensus 212 eevre~vadR~~ 223 (235)
T COG4778 212 EEVREAVADRLL 223 (235)
T ss_pred HHHHHHHhhhee
Confidence 443 6789984
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-26 Score=201.53 Aligned_cols=161 Identities=12% Similarity=0.155 Sum_probs=120.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+++.+||+..-+.. .. +.++||++.+||++-|.||||||||||+|+|+|+.+ |++|+|+++|..+..
T Consensus 2 ~L~a~~L~~~R~e~---~l---f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-----p~~G~v~~~~~~i~~-- 68 (209)
T COG4133 2 MLEAENLSCERGER---TL---FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-----PDAGEVYWQGEPIQN-- 68 (209)
T ss_pred cchhhhhhhccCcc---ee---ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-----CCCCeEEecCCCCcc--
Confidence 57889999886553 34 677999999999999999999999999999999999 999999999988751
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHH-HHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMI-KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.........-|+.-.+-+- ..|+.||+.|-...+.. .....+.++++.+||..
T Consensus 69 --------------~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~----~~~~~i~~Al~~vgL~g-------- 122 (209)
T COG4133 69 --------------VRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS----GNAATIWEALAQVGLAG-------- 122 (209)
T ss_pred --------------chhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC----CchhhHHHHHHHcCccc--------
Confidence 0000111112222122222 22777887764432221 23456778899999988
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 293 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH 293 (361)
+.+-+..+||-|||+|+||||-+ |||+++||. |--||..||
T Consensus 123 ---------~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttH 188 (209)
T COG4133 123 ---------LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188 (209)
T ss_pred ---------ccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 55889999999999999999987 999999864 667889999
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-25 Score=243.42 Aligned_cols=196 Identities=15% Similarity=0.130 Sum_probs=167.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
..+.+++|++.|+.... |+++ +||.|++||+.+++|||||||||++|+|.|..+ |++|++++.|.++..
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~---ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~-----~t~G~a~i~g~~i~~- 631 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRG---LSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK-----PTSGEALIKGHDITV- 631 (885)
T ss_pred ceEEEcceeeeecchhh--hhcc---eEEEecCCceEEEecCCCCCchhhHHHHhCCcc-----CCcceEEEecCcccc-
Confidence 56889999999986532 7666 999999999999999999999999999999999 999999999988751
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.....+.+..+||.||...+... |.++++.+-... ++.++.+..+.++.+++.+++.+
T Consensus 632 -------------~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arl-rG~~~~di~~~v~~ll~~~~L~~------- 690 (885)
T KOG0059|consen 632 -------------STDFQQVRKQLGYCPQFDALWEELTGREHLEFYARL-RGLPRSDIGSAIEKLLRLVGLGP------- 690 (885)
T ss_pred -------------ccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHH-cCCChhHHHHHHHHHHHHcCChh-------
Confidence 12223366779999999888877 888887664432 34556778888999999999998
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
.++++...+|||+|+|+++|.|+ |||++|+|+ ++.||+.|| ++
T Consensus 691 ----------~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE 760 (885)
T KOG0059|consen 691 ----------YANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEE 760 (885)
T ss_pred ----------hhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 45888999999999999999998 999999875 559999999 78
Q ss_pred cccccchhhHhhhhhhhcCCCCccccc
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIF 322 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~ 322 (361)
+..+|||+++ |.+|++...|+++++-
T Consensus 761 ~EaLCtR~aI-mv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 761 AEALCTRTAI-MVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHhhhhhe-eecCeeEEecChHHHH
Confidence 8999999986 9999999999998874
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-24 Score=211.10 Aligned_cols=182 Identities=14% Similarity=0.223 Sum_probs=141.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.||++|+.+.|.+.... +--||++|++||++-|+|.||||||||+++|.|+++ |++|+|++||+++.
T Consensus 322 ~lelrnvrfay~~~~Fh-----vgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~-----PqsG~I~ldg~pV~--- 388 (546)
T COG4615 322 TLELRNVRFAYQDNAFH-----VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVS--- 388 (546)
T ss_pred ceeeeeeeeccCcccce-----ecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC-----CCCCceeECCccCC---
Confidence 59999999999875433 455999999999999999999999999999999999 99999999999987
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.-.+.+.|+.++-||-|..+|+..+ +.+.....+.+..+++++.+.++.+
T Consensus 389 ------------~e~ledYR~LfSavFsDyhLF~~ll------------~~e~~as~q~i~~~LqrLel~~kts------ 438 (546)
T COG4615 389 ------------AEQLEDYRKLFSAVFSDYHLFDQLL------------GPEGKASPQLIEKWLQRLELAHKTS------ 438 (546)
T ss_pred ------------CCCHHHHHHHHHHHhhhHhhhHhhh------------CCccCCChHHHHHHHHHHHHhhhhc------
Confidence 4566778888888888888887643 1122245567777788887766431
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc--CCCceeec------------------------CCccEEEEEcCcc-c
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--NCPYLSFR------------------------DDKPVVVVTHGDL-L 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL--DEPt~~L~------------------------~g~tvIiiTH~~~-~ 297 (361)
|.|. .--+-.||-|||+|+|+--|+ +.|..-+| .|+||+.|||++. .
T Consensus 439 --l~d~----~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF 512 (546)
T COG4615 439 --LNDG----RFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF 512 (546)
T ss_pred --ccCC----cccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh
Confidence 1111 123446999999999999998 55554433 2999999999554 4
Q ss_pred cccchhhHhhhhhhhcCCC
Q 018083 298 SLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g 316 (361)
..|||+. .|.+|++++.-
T Consensus 513 ~~ADrll-~~~~G~~~e~t 530 (546)
T COG4615 513 IHADRLL-EMRNGQLSELT 530 (546)
T ss_pred hhHHHHH-HHhcCceeecc
Confidence 7789995 69999998864
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-24 Score=200.83 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=61.9
Q ss_pred cccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-----------CCCceeecC---------
Q 018083 225 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD--------- 284 (361)
Q Consensus 225 ~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPt~~L~~--------- 284 (361)
.++++.+++.+. .+++++.+||||||||++||||| ||||++||.
T Consensus 118 ~~~l~~~~l~~~----------------~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~ 181 (226)
T cd03270 118 LGFLVDVGLGYL----------------TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIET 181 (226)
T ss_pred HHHHHHCCCCcc----------------cccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 457888998752 24889999999999999999987 999999652
Q ss_pred -------CccEEEEEc-CccccccchhhHhh------hhhhhcCCC
Q 018083 285 -------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIP 316 (361)
Q Consensus 285 -------g~tvIiiTH-~~~~~~aDri~vvl------~~G~iv~~g 316 (361)
|.|||++|| .....+||+++ +| ++|+|++.|
T Consensus 182 l~~~~~~g~tii~itH~~~~~~~~d~i~-~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 182 LKRLRDLGNTVLVVEHDEDTIRAADHVI-DIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCCEEEEEEeCHHHHHhCCEEE-EeCCCccccCCEEEecC
Confidence 889999999 33346899995 59 899998875
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-23 Score=216.72 Aligned_cols=172 Identities=15% Similarity=0.163 Sum_probs=129.9
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
..+++++|+++.|+++. .+ ++++||.|.+|+.+|||||||+|||||+|+|+|... |.+|.|.+. ..+..
T Consensus 319 ~~vl~~~~~~~~y~~~~--~l---~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-----~~~G~v~~g-~~v~i 387 (530)
T COG0488 319 KLVLEFENVSKGYDGGR--LL---LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-----PLSGTVKVG-ETVKI 387 (530)
T ss_pred CeeEEEeccccccCCCc--ee---ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-----cCCceEEeC-CceEE
Confidence 34799999999997653 34 666999999999999999999999999999999999 999999874 34555
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
+|+.|...- +.+. ++.+.+.... ....+..++..|..+++..+.
T Consensus 388 gyf~Q~~~~------------------------l~~~~t~~d~l~~~~-------~~~~e~~~r~~L~~f~F~~~~---- 432 (530)
T COG0488 388 GYFDQHRDE------------------------LDPDKTVLEELSEGF-------PDGDEQEVRAYLGRFGFTGED---- 432 (530)
T ss_pred EEEEehhhh------------------------cCccCcHHHHHHhhC-------ccccHHHHHHHHHHcCCChHH----
Confidence 565554310 0011 2223332111 111267788899999998743
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cccc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~ 297 (361)
..+++..||||||-|+++|+.+ ||||..||- .-|||+||| ..+.
T Consensus 433 ------------~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~ 500 (530)
T COG0488 433 ------------QEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLD 500 (530)
T ss_pred ------------HhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 4789999999999999999998 999999762 568999999 4778
Q ss_pred cccchhhHhhhhhhhcC
Q 018083 298 SLTDRARIRTYLGELLG 314 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~ 314 (361)
.+|+++++ +.+ ++..
T Consensus 501 ~va~~i~~-~~~-~~~~ 515 (530)
T COG0488 501 RVATRIWL-VED-KVEE 515 (530)
T ss_pred hhcceEEE-EcC-ceeE
Confidence 99999964 665 4433
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-24 Score=188.24 Aligned_cols=186 Identities=16% Similarity=0.182 Sum_probs=138.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+++++++...- . |--+|.++..||++=+|||||||||||+-.++|+. |.+|+|.++|.++.
T Consensus 3 l~qln~v~~~t-----R-----L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~------~~sGsi~~~G~~l~--- 63 (248)
T COG4138 3 LMQLNDVAEST-----R-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------SGSGSIQFAGQPLE--- 63 (248)
T ss_pred eeeeccccccc-----c-----ccccccccccceEEEEECCCCccHHHHHHHHhCCC------CCCceEEECCcchh---
Confidence 46677776542 1 44488899999999999999999999999999999 57999999999875
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchH-HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.+...++.+.-+|..|+.. .|..-|+.-+.+ ..+.++....+.++..++++.++
T Consensus 64 ------------~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L------~qP~~~~a~~i~~i~~~L~l~DK------- 118 (248)
T COG4138 64 ------------AWSATELARHRAYLSQQQTPPFAMPVWHYLTL------HQPDKTRTELLNDVAGALALDDK------- 118 (248)
T ss_pred ------------HHhHhHHHHHHHHHhhccCCcchhhhhhhhhh------cCchHHHHHHHHHHHhhhcccch-------
Confidence 2222223333334333211 121122222221 11235556677788899999994
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc----------------CCCceeec----------------CCccEEEE
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFR----------------DDKPVVVV 291 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----------------DEPt~~L~----------------~g~tvIii 291 (361)
+.+..++||||+.|||-+|-.. |||.++|| .|.+|||.
T Consensus 119 ----------L~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims 188 (248)
T COG4138 119 ----------LGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMS 188 (248)
T ss_pred ----------hhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 4899999999999999999875 99999964 29999999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+| +.-.+.||++++ ++.|+++..|..++++..+
T Consensus 189 ~HDLNhTLrhA~~~wL-L~rG~l~~~G~~~eVlt~~ 223 (248)
T COG4138 189 SHDLNHTLRHAHRAWL-LKRGKLLASGRREEVLTPP 223 (248)
T ss_pred ccchhhHHHHHHHHHH-HhcCeEEeecchhhhcChH
Confidence 99 567788999986 9999999999999998754
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-22 Score=193.38 Aligned_cols=188 Identities=16% Similarity=0.074 Sum_probs=113.4
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhh-----hhhcccccccccce-----------eeecccccCcceEeEeee
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-----KVFENDKFASERAQ-----------VTYNSSVGDGTYFLQEYT 170 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~-----gl~~~~~~~p~~G~-----------I~i~G~~i~~~~~~~~~~ 170 (361)
|+++|++||.|.+++|+|+||||||||++.+. +.+......|..++ |.++..++....-.....
T Consensus 11 l~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~t 90 (261)
T cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPAT 90 (261)
T ss_pred CCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHH
Confidence 77799999999999999999999999999662 22211100122222 333333331100000000
Q ss_pred ecC-----------CCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 171 IPR-----------GSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 171 i~~-----------~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
+.. .+.+..+.+....+.|..++...+.. ++.+++.|-... .. .+++.++++.+||...
T Consensus 91 y~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~------~~-~~~~~~~L~~vgL~~l-- 161 (261)
T cd03271 91 YTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI------PK-IARKLQTLCDVGLGYI-- 161 (261)
T ss_pred HHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh------hh-HHHHHHHHHHcCCchh--
Confidence 000 00000001101112333444444444 666665442110 11 2356678889999762
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC----------------CccEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----------------DKPVVV 290 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~----------------g~tvIi 290 (361)
.+++++.+|||||+||++|||+| ||||++|+. |.|||+
T Consensus 162 --------------~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIi 227 (261)
T cd03271 162 --------------KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVV 227 (261)
T ss_pred --------------hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 14889999999999999999987 999999752 899999
Q ss_pred EEc-CccccccchhhHhh------hhhhhcCCCCc
Q 018083 291 VTH-GDLLSLTDRARIRT------YLGELLGIPPA 318 (361)
Q Consensus 291 iTH-~~~~~~aDri~vvl------~~G~iv~~g~~ 318 (361)
+|| ......||+++ +| ++|+|++.|++
T Consensus 228 itH~~~~i~~aD~ii-~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 228 IEHNLDVIKCADWII-DLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EeCCHHHHHhCCEEE-EecCCcCCCCCEEEEeCCC
Confidence 999 33446799995 59 89999998864
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-22 Score=184.45 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=98.8
Q ss_pred eeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccc----ccccceeeecccccCcceEeEeeeecCCCcceeeeec
Q 018083 108 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKF----ASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 183 (361)
Q Consensus 108 ~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~----~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~ 183 (361)
+++++++++| +++|+||||||||||+++|+++..+... .+..|++.+.|++.. . ...
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-~~~ 74 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETR-----------------K-PAN 74 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCC-----------------C-CCc
Confidence 4589999999 9999999999999999999999861100 012334555554432 0 112
Q ss_pred CCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchh
Q 018083 184 RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 263 (361)
Q Consensus 184 r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSG 263 (361)
+..++++||++..+ ++.. ..+++.++++. .+ ..++.+.+|||
T Consensus 75 ~~~v~~vfq~~~~~---------~~~~---------~~~~~~~~l~~---~~-----------------~~~~~~~~LS~ 116 (197)
T cd03278 75 FAEVTLTFDNSDGR---------YSII---------SQGDVSEIIEA---PG-----------------KKVQRLSLLSG 116 (197)
T ss_pred eEEEEEEEEcCCCc---------eeEE---------ehhhHHHHHhC---CC-----------------ccccchhhcCH
Confidence 34578889988654 1111 12345555555 22 24778999999
Q ss_pred hhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-CccccccchhhH
Q 018083 264 EKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARI 305 (361)
Q Consensus 264 GqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~v 305 (361)
|||||++||++| |||+++|+. +.|||++|| .....+||+++.
T Consensus 117 G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~ 187 (197)
T cd03278 117 GEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYG 187 (197)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEE
Confidence 999999999963 999999653 789999999 344578999953
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-22 Score=188.44 Aligned_cols=169 Identities=12% Similarity=0.003 Sum_probs=105.5
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-cceeeeccc-ccCcceEeEeeeecCCCcceeeeecCCCCcccc
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSS-VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 191 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G~-~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~ 191 (361)
+.+| +++||||||||||||+++|++++. +. .|++.+.+. ++... . . ........+.+++
T Consensus 23 ~~~~-~~~IvG~NGsGKStll~Ai~~ll~-----~~~~~~~r~~~~~~li~~--~-~----------~~~~~~~~v~~~f 83 (251)
T cd03273 23 FDPQ-FNAITGLNGSGKSNILDAICFVLG-----ITNLSTVRASNLQDLIYK--R-G----------QAGITKASVTIVF 83 (251)
T ss_pred CCCC-eEEEECCCCCCHHHHHHHHHHHhc-----ccccccccccCHHHHhhc--C-C----------CCCCcEEEEEEEE
Confidence 3454 999999999999999999999998 65 457777665 32100 0 0 0000011233445
Q ss_pred cch---------HHHHH-HHHhccccceeEEecC-CChhhhhhhcccccccCCCcceeEEEEEEE------EEEechhhh
Q 018083 192 DNI---------NMIKL-WIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVNFVI------FVVDGLAVL 254 (361)
Q Consensus 192 q~~---------~l~~~-ti~~ni~~~~~~~~~~-~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~------~vv~~~~~~ 254 (361)
|++ .+.+. +|..++..+....... ......+++.++++.+++..+- ..++| -+++....+
T Consensus 84 q~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~---~~~~i~Qg~v~~~~~~~~~~ 160 (251)
T cd03273 84 DNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNN---PHFLIMQGRITKVLNMGGVW 160 (251)
T ss_pred EcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCC---ceEEEeehHHHHHHHhHHhh
Confidence 543 12222 5666665543221111 1233457788889999986210 00000 011112245
Q ss_pred hhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cccccccchhh
Q 018083 255 KSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 304 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~ 304 (361)
+.++.+||+|||||++||||| ||||++|+. |.|+|+||| ..+...||+++
T Consensus 161 ~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~ 239 (251)
T cd03273 161 KESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLF 239 (251)
T ss_pred cccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEE
Confidence 788999999999999999854 999999642 889999999 67777899993
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-20 Score=194.99 Aligned_cols=169 Identities=16% Similarity=0.150 Sum_probs=126.5
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
...|+++|+++.-+++. .. |++.||+|++|+.+.|.||||||||||+|+|+|+.+ .-+|+|.+-. +
T Consensus 390 ~~~i~~~nl~l~~p~~~--~l---l~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP-----~g~G~I~~P~-~--- 455 (604)
T COG4178 390 DHGITLENLSLRTPDGQ--TL---LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP-----WGSGRISMPA-D--- 455 (604)
T ss_pred cceeEEeeeeEECCCCC--ee---eccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc-----cCCCceecCC-C---
Confidence 36799999999988764 34 677999999999999999999999999999999999 7778776541 1
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
...-|+||.|.+...+.++-|+++.... ....+++.++|.++||.+-..+
T Consensus 456 ----------------------~~~lflpQ~PY~p~GtLre~l~YP~~~~-----~~~d~~l~~vL~~vgL~~L~~r--- 505 (604)
T COG4178 456 ----------------------SALLFLPQRPYLPQGTLREALCYPNAAP-----DFSDAELVAVLHKVGLGDLAER--- 505 (604)
T ss_pred ----------------------CceEEecCCCCCCCccHHHHHhCCCCCC-----CCChHHHHHHHHHcCcHHHHHH---
Confidence 1123457777766667788888765421 2345677788999999862200
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Cccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLL 297 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~ 297 (361)
+|+. ++=-..||+|||||+++||.| ||.|++||+ +.|||-|.| ..+.
T Consensus 506 -----l~~~---~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~ 577 (604)
T COG4178 506 -----LDEE---DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW 577 (604)
T ss_pred -----Hhcc---CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhH
Confidence 1111 111225999999999999998 999999763 899999999 6666
Q ss_pred cccchh
Q 018083 298 SLTDRA 303 (361)
Q Consensus 298 ~~aDri 303 (361)
.+.++.
T Consensus 578 ~~h~~~ 583 (604)
T COG4178 578 NFHSRQ 583 (604)
T ss_pred HHHhhh
Confidence 666665
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-20 Score=174.32 Aligned_cols=167 Identities=11% Similarity=0.038 Sum_probs=99.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCC-CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc-cccCc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS-SVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~-~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G-~~i~~ 162 (361)
.|+++|+. +|.+. .+++|+.. +|++++|+||||||||||+++|++.+.+ +..+....+. .+..
T Consensus 5 ~i~l~nf~-~y~~~---------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g----~~~~~~~~~~~~~~~- 69 (213)
T cd03279 5 KLELKNFG-PFREE---------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG----KTPRYGRQENLRSVF- 69 (213)
T ss_pred EEEEECCc-CcCCc---------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec----CccccccchhHHHHh-
Confidence 37788887 66442 22777654 5899999999999999999999964421 3334333320 0000
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
........++++||+... .+........+.....+.+ .++..++.+
T Consensus 70 ----------------~~~~~~~~v~~~f~~~~~---------~~~~~r~~gl~~~~~~~~~--~l~~g~l~~------- 115 (213)
T cd03279 70 ----------------APGEDTAEVSFTFQLGGK---------KYRVERSRGLDYDQFTRIV--LLPQGEFDR------- 115 (213)
T ss_pred ----------------cCCCccEEEEEEEEECCe---------EEEEEEecCCCHHHHHHhh--hhhhcchHH-------
Confidence 000111123334444311 0000001111111111111 233444444
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc-------------------CCCceeecC----------------Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------------NCPYLSFRD----------------DKP 287 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-------------------DEPt~~L~~----------------g~t 287 (361)
++++++.+||+||+||++||||| |||++++|. +.|
T Consensus 116 ----------~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~t 185 (213)
T cd03279 116 ----------FLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRM 185 (213)
T ss_pred ----------HhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 45888999999999999998854 899999642 789
Q ss_pred EEEEEc--CccccccchhhHhhhhhh
Q 018083 288 VVVVTH--GDLLSLTDRARIRTYLGE 311 (361)
Q Consensus 288 vIiiTH--~~~~~~aDri~vvl~~G~ 311 (361)
||+||| ..+..+||++. ++++|.
T Consensus 186 ii~itH~~~~~~~~~~~i~-~~~~~~ 210 (213)
T cd03279 186 VGVISHVEELKERIPQRLE-VIKTPG 210 (213)
T ss_pred EEEEECchHHHHhhCcEEE-EEecCC
Confidence 999999 56778899996 488774
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.9e-21 Score=192.72 Aligned_cols=192 Identities=13% Similarity=0.120 Sum_probs=144.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..+.+++++++..- . ++|+||++++||+++|.|--|||+|-|+++|.|+.+ +.+|+|.++|+++.
T Consensus 260 ~~~~l~v~~l~~~~-------~---~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-----~~~G~i~l~G~~v~ 324 (500)
T COG1129 260 GEPVLEVRNLSGGG-------K---VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-----ASSGEILLDGKPVR 324 (500)
T ss_pred CCcEEEEecCCCCC-------c---eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-----CCCceEEECCEEcc
Confidence 34567888887542 1 667999999999999999999999999999999888 89999999999876
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchH---HHHH-HHHhcccccee-EE--e-cCCChhhhhhhcccccccCC
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN---MIKL-WIMEGVRHGEL-VI--R-RSDSSSLRNRMRCKAHKIGC 233 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~---l~~~-ti~~ni~~~~~-~~--~-~~~~~~~~~~v~~~l~~~gl 233 (361)
... .-......++||++|-. ++.. +|.+|+.++.. .. + ..+....++.+.++.+.+++
T Consensus 325 ~~s--------------p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~I 390 (500)
T COG1129 325 IRS--------------PRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI 390 (500)
T ss_pred CCC--------------HHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCc
Confidence 211 01112224555655432 3333 77888877622 11 1 24455556667778888888
Q ss_pred CcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec----------------CCccE
Q 018083 234 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPV 288 (361)
Q Consensus 234 ~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~----------------~g~tv 288 (361)
...- .+....+||||-||++.|||.| ||||.|+| +|++|
T Consensus 391 k~~s----------------~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ai 454 (500)
T COG1129 391 KTPS----------------PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAI 454 (500)
T ss_pred ccCC----------------ccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEE
Confidence 6421 2788999999999999999999 99999953 39999
Q ss_pred EEEEc--CccccccchhhHhhhhhhhcCCCCcc
Q 018083 289 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAK 319 (361)
Q Consensus 289 IiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~ 319 (361)
||||- .++..+||||+ ||++|++++.-+.+
T Consensus 455 l~iSSElpEll~~~DRIl-Vm~~Gri~~e~~~~ 486 (500)
T COG1129 455 LMISSELPELLGLSDRIL-VMREGRIVGELDRE 486 (500)
T ss_pred EEEeCChHHHHhhCCEEE-EEECCEEEEEeccc
Confidence 99999 68889999996 69999998854443
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-20 Score=172.09 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=44.6
Q ss_pred hhhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cccccccchhh
Q 018083 254 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 304 (361)
Q Consensus 254 ~~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~ 304 (361)
.+.++.+||||||||++||||| |||+++||+ +++||++|| .++..+||+++
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~ 231 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFY 231 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEE
Confidence 3678899999999999999975 899999653 678888888 67778999995
Q ss_pred Hhhh
Q 018083 305 IRTY 308 (361)
Q Consensus 305 vvl~ 308 (361)
+ |.
T Consensus 232 ~-l~ 234 (243)
T cd03272 232 G-VK 234 (243)
T ss_pred E-EE
Confidence 4 54
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-20 Score=185.01 Aligned_cols=178 Identities=15% Similarity=0.132 Sum_probs=129.5
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..|.+.++|++|.|.++.++ +++++|-|..++.+++|||||||||||+|++.|.+. |+.|.|.-.-...-
T Consensus 386 p~pvi~~~nv~F~y~~~~~i-----y~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-----p~~G~vs~~~H~~~ 455 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMI-----YKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-----PTIGMVSRHSHNKL 455 (614)
T ss_pred CCCeEEEeccccCCCCcchh-----hhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-----cccccccccccccc
Confidence 34679999999999876544 777999999999999999999999999999999999 99998875432211
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchH---HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN---MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~---l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
+ +-.|+.. .+..+..+++.--+ .+....+.++.++.++||..+.
T Consensus 456 ----------~----------------~y~Qh~~e~ldl~~s~le~~~~~~------~~~~~~e~~r~ilgrfgLtgd~- 502 (614)
T KOG0927|consen 456 ----------P----------------RYNQHLAEQLDLDKSSLEFMMPKF------PDEKELEEMRSILGRFGLTGDA- 502 (614)
T ss_pred ----------h----------------hhhhhhHhhcCcchhHHHHHHHhc------cccchHHHHHHHHHHhCCCccc-
Confidence 0 0011110 01112223332111 1134457788899999998643
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--C
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--G 294 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~ 294 (361)
...+..+||+|||.||+.|+++ ||||++||- .-+||++|| .
T Consensus 503 ---------------q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfr 567 (614)
T KOG0927|consen 503 ---------------QVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFR 567 (614)
T ss_pred ---------------cccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhh
Confidence 3678899999999999999997 999999762 457999999 4
Q ss_pred ccccccchhhHhhhhhhhc-CCCCc
Q 018083 295 DLLSLTDRARIRTYLGELL-GIPPA 318 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv-~~g~~ 318 (361)
.+.+++++|++ ..+|.+. ..|..
T Consensus 568 lI~qVaeEi~~-c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 568 LISQVAEEIWV-CENGTVTKWDGDI 591 (614)
T ss_pred HHHHHHHHhHh-hccCceeecCccH
Confidence 67799999975 6666553 34433
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-20 Score=170.56 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=45.9
Q ss_pred hhhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cccccccchhh
Q 018083 254 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 304 (361)
Q Consensus 254 ~~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~ 304 (361)
.++++..||+|||||++||||+ |||+++||+ +.|+|++|| ..+.++|||+.
T Consensus 121 ~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~ 200 (212)
T cd03274 121 SWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLV 200 (212)
T ss_pred cccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEE
Confidence 4778889999999999999844 999999753 678999999 77889999995
Q ss_pred Hhhhh
Q 018083 305 IRTYL 309 (361)
Q Consensus 305 vvl~~ 309 (361)
+|..
T Consensus 201 -~~~~ 204 (212)
T cd03274 201 -GIYK 204 (212)
T ss_pred -EEEe
Confidence 4653
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-19 Score=179.20 Aligned_cols=186 Identities=16% Similarity=0.052 Sum_probs=131.5
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
..|++++|++.-+..+. .. ++++||+|+.|+.+.|.||||||||+|+|.|+|+.+ ..+|.+..-.....
T Consensus 432 n~i~~e~v~l~tPt~g~-~l---ie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-----~~~G~l~k~~~~~~-- 500 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGD-LL---IENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-----STGGKLTKPTDGGP-- 500 (659)
T ss_pred ceEEeeeeeecCCCCCc-ee---eeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-----cCCCeEEecccCCC--
Confidence 47999999999876332 34 566999999999999999999999999999999998 78998875432211
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
+..-|+||.|.+...|+++.|.++........+....+++.+.|+.++|.+-+.+ ...
T Consensus 501 ---------------------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~gg 558 (659)
T KOG0060|consen 501 ---------------------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGG 558 (659)
T ss_pred ---------------------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCC
Confidence 1234578888877778999999886533222233445566677777776651100 000
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc-Ccccccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLT 300 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH-~~~~~~a 300 (361)
+. .. +-..=...||+||+||+++||.+ ||-|++++. |+|.|-|.| ..+.++-
T Consensus 559 ld----~~-~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfH 633 (659)
T KOG0060|consen 559 LD----QQ-VDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFH 633 (659)
T ss_pred CC----ch-hhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhh
Confidence 00 00 00112235999999999999998 999999652 999999999 6777777
Q ss_pred chhhHhhh
Q 018083 301 DRARIRTY 308 (361)
Q Consensus 301 Dri~vvl~ 308 (361)
|.+. .|+
T Consensus 634 d~~L-~~~ 640 (659)
T KOG0060|consen 634 DYVL-RMD 640 (659)
T ss_pred hEEE-Eec
Confidence 7773 354
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-19 Score=166.40 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=42.6
Q ss_pred hhccCCchhhhhhhhhhhhcc-------------CCCceeecC----------------CccEEEEEc-Cccccccchhh
Q 018083 255 KSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRAR 304 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~ 304 (361)
..++.+||+|||||++||+|+ |||+++|+. |.+||+||| ......||+++
T Consensus 150 ~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~ 229 (247)
T cd03275 150 FRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALV 229 (247)
T ss_pred hhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEE
Confidence 344589999999999999975 999999642 789999999 55668899996
Q ss_pred H
Q 018083 305 I 305 (361)
Q Consensus 305 v 305 (361)
+
T Consensus 230 ~ 230 (247)
T cd03275 230 G 230 (247)
T ss_pred E
Confidence 5
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-19 Score=192.37 Aligned_cols=92 Identities=15% Similarity=0.099 Sum_probs=73.0
Q ss_pred cccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC--------
Q 018083 225 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD-------- 284 (361)
Q Consensus 225 ~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~-------- 284 (361)
.++++.++|... .+++.+.+|||||+||++||++| |||+++|+.
T Consensus 811 l~~L~~vgL~~l----------------~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~ 874 (943)
T PRK00349 811 LQTLVDVGLGYI----------------KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE 874 (943)
T ss_pred HHHHHHCCCCcc----------------cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH
Confidence 456777788642 24788999999999999999988 999999642
Q ss_pred --------CccEEEEEc-CccccccchhhHhh------hhhhhcCCCCccccccCCCCCCCCchh
Q 018083 285 --------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 285 --------g~tvIiiTH-~~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
|.|||+||| .+....||+++ .| ++|++++.|++++++..+. +++..++
T Consensus 875 ~L~~l~~~G~TVIiitH~~~~i~~aD~ii-~Lgp~~G~~~G~Iv~~Gt~~el~~~~~-s~t~~~l 937 (943)
T PRK00349 875 VLHRLVDKGNTVVVIEHNLDVIKTADWII-DLGPEGGDGGGEIVATGTPEEVAKVEA-SYTGRYL 937 (943)
T ss_pred HHHHHHhCCCEEEEEecCHHHHHhCCEEE-EecCCcCCCCCEEEEeCCHHHHHhCcc-cHHHHHH
Confidence 899999999 33446799995 59 7999999999999988765 4444443
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.4e-19 Score=175.66 Aligned_cols=198 Identities=17% Similarity=0.215 Sum_probs=146.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|++++|+..-..+ .++ +++|||+|++||+++|.|=.|-|-+-|+.+|+|+.+ +.+|.|.++|+++.
T Consensus 254 g~~vL~V~~L~v~~~~~--~~~---v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-----~~~G~I~l~G~~v~ 323 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG--VTA---VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-----PASGRILLNGKDVL 323 (501)
T ss_pred CCeEEEEeeeEeecCCC--Cce---eeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-----cCCceEEECCEecc
Confidence 44589999999875433 356 555999999999999999999999999999999998 88899999999861
Q ss_pred cceEeEeeeecCCCcceeeeec-CCCCcccccchH---HHHH-HHHhccccceeE------EecCCChhhhhhhcccccc
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNIN---MIKL-WIMEGVRHGELV------IRRSDSSSLRNRMRCKAHK 230 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~---l~~~-ti~~ni~~~~~~------~~~~~~~~~~~~v~~~l~~ 230 (361)
.. ...... ...+++||++-. +.+. ++.+|+.+.... .+..+..+..+.+.++++.
T Consensus 324 ~~--------------~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~ 389 (501)
T COG3845 324 GR--------------LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEE 389 (501)
T ss_pred cc--------------CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHH
Confidence 00 011111 122344444431 1122 555665554321 1224456777788888888
Q ss_pred cCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec----------------CC
Q 018083 231 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DD 285 (361)
Q Consensus 231 ~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~----------------~g 285 (361)
+++...- ...+...||||.+||+.+||-| ..||-||| .|
T Consensus 390 fdVr~~~----------------~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G 453 (501)
T COG3845 390 FDVRAPS----------------PDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAG 453 (501)
T ss_pred cCccCCC----------------CCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcC
Confidence 8886311 2567889999999999999998 78888864 29
Q ss_pred ccEEEEEc--CccccccchhhHhhhhhhhcCCCCccc
Q 018083 286 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 320 (361)
Q Consensus 286 ~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~ 320 (361)
+.||+|+- +++..+||||+ ||++|+++...++++
T Consensus 454 ~AVLLiS~dLDEil~lsDrIa-Vi~~Gri~~~~~~~~ 489 (501)
T COG3845 454 KAVLLISEDLDEILELSDRIA-VIYEGRIVGIVPPEE 489 (501)
T ss_pred CEEEEEehhHHHHHHhhheee-eeeCCceeccccccc
Confidence 99999999 78999999997 599999999877754
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-19 Score=200.16 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=71.4
Q ss_pred hhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC-
Q 018083 218 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD- 284 (361)
Q Consensus 218 ~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~- 284 (361)
+...+++ ++++.++|... .+++.+.+|||||+||++||||| ||||++|+.
T Consensus 784 ~~i~~~l-~~L~~vGL~~l----------------~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~ 846 (1809)
T PRK00635 784 PSIHEKI-HALCSLGLDYL----------------PLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTH 846 (1809)
T ss_pred HHHHHHH-HHHHHcCCcch----------------hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHH
Confidence 3455556 47888899762 14889999999999999999998 999999752
Q ss_pred ---------------CccEEEEEc--CccccccchhhHhhh------hhhhcCCCCcccccc
Q 018083 285 ---------------DKPVVVVTH--GDLLSLTDRARIRTY------LGELLGIPPAKQIFD 323 (361)
Q Consensus 285 ---------------g~tvIiiTH--~~~~~~aDri~vvl~------~G~iv~~g~~~~i~~ 323 (361)
|.|||+||| +.+ .+||+++ +|. .|+++..|++++++.
T Consensus 847 ~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi-~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 847 DIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVL-ELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEE-EEccCCCCCCCEEEEeCCHHHHHh
Confidence 889999999 444 8999995 585 789999999998875
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-18 Score=174.47 Aligned_cols=196 Identities=14% Similarity=0.130 Sum_probs=127.3
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee--cccccCc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY--NSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i--~G~~i~~ 162 (361)
-+.+.|+++.|.+. .. ++|+.|++.+|+.++|+|||||||||+|++|.|-.. |..-.+.+ ..+++..
T Consensus 75 dvk~~sls~s~~g~---~l---~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~-----P~p~~~d~y~ls~e~~p 143 (614)
T KOG0927|consen 75 DVKIESLSLSFHGV---EL---IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV-----PIPEHIDFYLLSREIEP 143 (614)
T ss_pred cceeeeeeeccCCc---ee---eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC-----CCCcccchhhhcccCCC
Confidence 58999999999764 45 677999999999999999999999999999999988 65443322 2222110
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccc------------eeEEecCCChhhhhhhcccccc
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG------------ELVIRRSDSSSLRNRMRCKAHK 230 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~------------~~~~~~~~~~~~~~~v~~~l~~ 230 (361)
... -.++. .+-.+.+...-+. ...+.+... .......+.+....++..+|.-
T Consensus 144 ----s~~--------~av~~---v~~~~~~e~~rle-~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~g 207 (614)
T KOG0927|consen 144 ----SEK--------QAVQA---VVMETDHERKRLE-YLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHG 207 (614)
T ss_pred ----chH--------HHHHH---HhhhhHHHHHHHH-HHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHh
Confidence 000 00000 0000000000000 000111100 0000012334455666677778
Q ss_pred cCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------Cc-c
Q 018083 231 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DK-P 287 (361)
Q Consensus 231 ~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~-t 287 (361)
+|+.+. ..++....||||||.|+++|||| ||||++||. +. +
T Consensus 208 lgf~~~----------------m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~ 271 (614)
T KOG0927|consen 208 LGFLSE----------------MQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRII 271 (614)
T ss_pred cCCCHh----------------HHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCce
Confidence 887764 35888999999999999999998 999999762 55 8
Q ss_pred EEEEEc--CccccccchhhHhhhhhh-hcCCCCccccccC
Q 018083 288 VVVVTH--GDLLSLTDRARIRTYLGE-LLGIPPAKQIFDI 324 (361)
Q Consensus 288 vIiiTH--~~~~~~aDri~vvl~~G~-iv~~g~~~~i~~~ 324 (361)
+++++| +.+-.+|..|+ -++.++ +...|+.++....
T Consensus 272 lVi~sh~QDfln~vCT~Ii-~l~~kkl~~y~Gnydqy~~t 310 (614)
T KOG0927|consen 272 LVIVSHSQDFLNGVCTNII-HLDNKKLIYYEGNYDQYVKT 310 (614)
T ss_pred EEEEecchhhhhhHhhhhh-eecccceeeecCCHHHHhhH
Confidence 999999 77889999995 599999 5667877766543
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-18 Score=186.95 Aligned_cols=182 Identities=10% Similarity=0.064 Sum_probs=136.8
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceee
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 180 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~ 180 (361)
.+. |+||+=-++||..+||+|+||||||||+++|+|-...+ ..+|+|.++|.+...
T Consensus 804 ~qL---L~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G---~I~Gdi~i~G~p~~q------------------ 859 (1391)
T KOG0065|consen 804 RQL---LNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG---YIEGDILISGFPKDQ------------------ 859 (1391)
T ss_pred eEh---hhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc---eEEeEEEECCeeCch------------------
Confidence 456 55599999999999999999999999999999986544 578999999977641
Q ss_pred eecCCCCcccccchHHHHH-HHHhccccceeEE--ecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhc
Q 018083 181 YDTRSLSDDASDNINMIKL-WIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 257 (361)
Q Consensus 181 ~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~--~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~ 257 (361)
....+.+|||.|+..-.+. ||+|-+.++...+ ...+.++..+.++++++.++|++-. ..+-..+
T Consensus 860 ~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------------daiVG~~ 926 (1391)
T KOG0065|consen 860 ETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------------DALVGLP 926 (1391)
T ss_pred hhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------------hhhccCC
Confidence 1234567888776543344 8999888865432 2233445557888999999998621 0022334
Q ss_pred cCCchhhhhhhhhhhhcc----------CCCceeecC----------------CccEEEEEc---CccccccchhhHhhh
Q 018083 258 EGDSDVEKQYNQIVATTF----------NCPYLSFRD----------------DKPVVVVTH---GDLLSLTDRARIRTY 308 (361)
Q Consensus 258 ~~~LSGGqrQRvaIArAL----------DEPt~~L~~----------------g~tvIiiTH---~~~~~~aDri~vvl~ 308 (361)
...||..||+|+.||=-| ||||+|||. |.|||..-| .++.+..|++++ |+
T Consensus 927 G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLL-Lk 1005 (1391)
T KOG0065|consen 927 GSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLL-LK 1005 (1391)
T ss_pred CCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHH-Hh
Confidence 455999999999999777 999999863 999999999 366788999975 65
Q ss_pred -hhhhcCCCCccc
Q 018083 309 -LGELLGIPPAKQ 320 (361)
Q Consensus 309 -~G~iv~~g~~~~ 320 (361)
.|+.|..|+.-+
T Consensus 1006 rGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 1006 RGGQTVYFGPLGE 1018 (1391)
T ss_pred cCCeEEEecCccc
Confidence 577888876643
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-18 Score=156.38 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=43.0
Q ss_pred hhhccCCchhhhhhh------hhhhhcc---------CCCceeecC------------------CccEEEEEc-Cccccc
Q 018083 254 LKSMEGDSDVEKQYN------QIVATTF---------NCPYLSFRD------------------DKPVVVVTH-GDLLSL 299 (361)
Q Consensus 254 ~~~~~~~LSGGqrQR------vaIArAL---------DEPt~~L~~------------------g~tvIiiTH-~~~~~~ 299 (361)
+++.+..||+||+|| ++||||+ |||+++||. +.|||++|| ......
T Consensus 109 ~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 109 LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 366788999999996 6788887 999999642 579999999 445567
Q ss_pred cchhhHhhh
Q 018083 300 TDRARIRTY 308 (361)
Q Consensus 300 aDri~vvl~ 308 (361)
||+++. |.
T Consensus 189 ~d~i~~-l~ 196 (204)
T cd03240 189 ADHIYR-VE 196 (204)
T ss_pred CCEEEE-Ee
Confidence 999964 54
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-17 Score=148.28 Aligned_cols=190 Identities=12% Similarity=0.061 Sum_probs=123.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
...|++.++.|.|+...++ +-|+|+++|.|....+||.||||||||+|+|+|-.- .-.|.|.+.|.+.--
T Consensus 11 ~~aievsgl~f~y~~~dP~-----~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-----v~~~~v~VlgrsaFh 80 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPI-----FFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-----VGGGVVQVLGRSAFH 80 (291)
T ss_pred cceEEEeccEEecccCCce-----EEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-----ccCCeEEEcCcCccc
Confidence 4469999999999866544 777999999999999999999999999999999665 556899999876410
Q ss_pred ceEeEeeeecCC-CcceeeeecCCCCcc---cccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 163 TYFLQEYTIPRG-SNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~-~~~~~~~d~r~~i~~---v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
...+..+ ...|---++....++ ||=.-.+ ++ +.+.++.. +. .. ++-+.+.+.+.++-
T Consensus 81 -----Dt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~---sa-e~mifgV~---g~-dp---~Rre~LI~iLDIdl--- 141 (291)
T KOG2355|consen 81 -----DTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDI---SA-EHMIFGVG---GD-DP---ERREKLIDILDIDL--- 141 (291)
T ss_pred -----cccccccCceeEecccccccccccccccccccc---cH-HHHHhhcc---CC-Ch---hHhhhhhhheeccc---
Confidence 0000000 000111111111111 1111111 11 11122211 11 12 33444555555543
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec-----------------CCccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR-----------------DDKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~-----------------~g~tvIiiT 292 (361)
.-+.+.+|-|||+||.||..| ||-|--|| .|.||++.|
T Consensus 142 ----------------~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYAT 205 (291)
T KOG2355|consen 142 ----------------RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYAT 205 (291)
T ss_pred ----------------eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEe
Confidence 446788999999999999998 88776643 299999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCc
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
| +-++.++.+++ .+..|+++..-+.
T Consensus 206 HIFDGLe~Wpthl~-yi~~Gkl~~~l~~ 232 (291)
T KOG2355|consen 206 HIFDGLETWPTHLV-YIKSGKLVDNLKY 232 (291)
T ss_pred eeccchhhcchhEE-EecCCeeeecccc
Confidence 9 77889999996 4999999874433
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-17 Score=165.16 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=104.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+++...+++.|++-. .++=.| +|..||+++++||||-|||||+++|+|.++ |++|. ..++...|
T Consensus 342 lv~y~~~~k~~g~F~-L~V~~G------~i~~gEvigilGpNgiGKTTFvk~LAG~ik-----Pdeg~----~~~~~vSy 405 (591)
T COG1245 342 LVEYPDLKKTYGDFK-LEVEEG------EIYDGEVIGILGPNGIGKTTFVKLLAGVIK-----PDEGS----EEDLKVSY 405 (591)
T ss_pred eeecchheeecCceE-EEecCC------eeecceEEEEECCCCcchHHHHHHHhcccc-----CCCCC----CccceEee
Confidence 455566666666432 223333 788899999999999999999999999999 99998 34444333
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+|.. ..+ .-+.|.|- +........ ..+. -..++++-+.|++
T Consensus 406 KPQyI----------~~~---~~gtV~~~---l~~~~~~~~----------~~s~---~~~ei~~pl~l~~--------- 447 (591)
T COG1245 406 KPQYI----------SPD---YDGTVEDL---LRSAIRSAF----------GSSY---FKTEIVKPLNLED--------- 447 (591)
T ss_pred cceee----------cCC---CCCcHHHH---HHHhhhhhc----------ccch---hHHhhcCccchHH---------
Confidence 33221 111 11112221 111110000 0111 1223566677777
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEcC--cc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG--DL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH~--~~ 296 (361)
+++++..+||||+.||+|||.|| |||.+-||- ++|.++|.|+ .+
T Consensus 448 --------i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~ 519 (591)
T COG1245 448 --------LLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI 519 (591)
T ss_pred --------HHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehh
Confidence 67999999999999999999999 999998752 8999999994 44
Q ss_pred ccccchhh
Q 018083 297 LSLTDRAR 304 (361)
Q Consensus 297 ~~~aDri~ 304 (361)
--++||++
T Consensus 520 dyvsDr~i 527 (591)
T COG1245 520 DYVSDRLI 527 (591)
T ss_pred hhhhceEE
Confidence 46789994
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-17 Score=182.25 Aligned_cols=81 Identities=14% Similarity=0.082 Sum_probs=65.5
Q ss_pred hcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC-------
Q 018083 224 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------- 284 (361)
Q Consensus 224 v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~------- 284 (361)
..++++.+||... .+++.+.+|||||+||++||++| |||+++|+.
T Consensus 808 ~l~~L~~~gL~~l----------------~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~ 871 (924)
T TIGR00630 808 KLQTLCDVGLGYI----------------KLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL 871 (924)
T ss_pred HHHHHHHcCCCch----------------hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH
Confidence 3456777888642 24788999999999999999987 999999652
Q ss_pred ---------CccEEEEEc-CccccccchhhHhh------hhhhhcCCCCcccc
Q 018083 285 ---------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQI 321 (361)
Q Consensus 285 ---------g~tvIiiTH-~~~~~~aDri~vvl------~~G~iv~~g~~~~i 321 (361)
|.|||++|| ......||+++ +| ++|++++.|+++++
T Consensus 872 ~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii-~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 872 EVLQRLVDQGNTVVVIEHNLDVIKTADYII-DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHhCCEEE-EecCCccCCCCEEEEeCCHHHh
Confidence 899999999 33446799995 59 79999999988764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-17 Score=163.50 Aligned_cols=180 Identities=14% Similarity=0.076 Sum_probs=114.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|.+.++++.|+++ .. |.+-++++..|..++|+|+||+|||||+|+|+. |+|.....+-
T Consensus 81 i~~~~fdLa~G~k---~L---L~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----------~~v~~f~veq----- 138 (582)
T KOG0062|consen 81 IHIDNFDLAYGGK---IL---LNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----------GQVSGFHVEQ----- 138 (582)
T ss_pred eeeeeeeeeecch---hh---hcCCceeeecccccceeCCCCCcHHHHHHHHHh-----------cCcCccCchh-----
Confidence 6778899999864 34 666999999999999999999999999999876 3332222110
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcc-cccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC-KAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~-~l~~~gl~~~~~~~~~~~ 244 (361)
+.++..-..-|.......++.+-+...... ......+++.. +|.-+|+.++.
T Consensus 139 ----------------E~~g~~t~~~~~~l~~D~~~~dfl~~e~~l----~~~~~l~ei~~~~L~glGFt~em------- 191 (582)
T KOG0062|consen 139 ----------------EVRGDDTEALQSVLESDTERLDFLAEEKEL----LAGLTLEEIYDKILAGLGFTPEM------- 191 (582)
T ss_pred ----------------heeccchHHHhhhhhccHHHHHHHHhhhhh----hccchHHHHHHHHHHhCCCCHHH-------
Confidence 000000000000000000111111100000 00001122333 78899998864
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Ccccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSLT 300 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~~~a 300 (361)
..++..+||||-|-|+++|||| ||||.-||- ..|+|+||| ..+-..|
T Consensus 192 ---------q~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~ 262 (582)
T KOG0062|consen 192 ---------QLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVC 262 (582)
T ss_pred ---------HhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHH
Confidence 4678889999999999999998 999998752 789999999 5777889
Q ss_pred chhhHhhhhhhh-cCCCCccccccC
Q 018083 301 DRARIRTYLGEL-LGIPPAKQIFDI 324 (361)
Q Consensus 301 Dri~vvl~~G~i-v~~g~~~~i~~~ 324 (361)
..| |.++.-++ ...|.-+++...
T Consensus 263 tdI-IH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 263 TDI-IHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHH-HHHhhhhhhhhcCcHHHHHHh
Confidence 888 44766555 345766665543
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-17 Score=164.02 Aligned_cols=174 Identities=11% Similarity=0.045 Sum_probs=108.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|.++|+-+--+.+. .+ ...++|+|++|-.+.|+||||||||+|+|+|.|+.+ ...|...+--
T Consensus 482 I~lenIpvItP~~~--vv---v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP-----vy~g~L~~P~-------- 543 (728)
T KOG0064|consen 482 IILENIPVITPAGD--VL---VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-----VYNGLLSIPR-------- 543 (728)
T ss_pred eEEecCceeccCcc--ee---ecceeEEecCCceEEEECCCCccHHHHHHHHhccCc-----ccCCeeecCC--------
Confidence 55666666555543 24 445999999999999999999999999999999998 6555444311
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
...+-|+||.|.+-..+..|.|-++...-...++.-.++..+.+|..+.|+.-+-+.. ...
T Consensus 544 ------------------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~-g~d 604 (728)
T KOG0064|consen 544 ------------------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREG-GWD 604 (728)
T ss_pred ------------------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhcc-Chh
Confidence 1124456666665544666666654321000011112233444555555543110000 000
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec-------------CCccEEEEEc-Cccccccch
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR-------------DDKPVVVVTH-GDLLSLTDR 302 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~-------------~g~tvIiiTH-~~~~~~aDr 302 (361)
....--..||||+|||+++||.+ ||-|++.. -|.++|-||| ..+-++-..
T Consensus 605 -------a~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h~~ 677 (728)
T KOG0064|consen 605 -------AVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYHTH 677 (728)
T ss_pred -------hhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHHHHH
Confidence 00111235999999999999998 99999843 2999999999 666666666
Q ss_pred h
Q 018083 303 A 303 (361)
Q Consensus 303 i 303 (361)
+
T Consensus 678 l 678 (728)
T KOG0064|consen 678 L 678 (728)
T ss_pred H
Confidence 6
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-16 Score=146.47 Aligned_cols=147 Identities=10% Similarity=0.046 Sum_probs=86.8
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
++++++++.+| +.+|+||||||||||+.+|.-.+. .... ....|..... .+.. + .....
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~-~~~r~~~~~~-------~i~~---~----~~~~~ 70 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKAS-DTNRGSSLKD-------LIKD---G----ESSAK 70 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcc-cccccccHHH-------HhhC---C----CCeEE
Confidence 44578888888 789999999999999999986554 1111 0111111000 0000 0 00011
Q ss_pred CcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhh
Q 018083 187 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 266 (361)
Q Consensus 187 i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 266 (361)
+.+++++..++. | ......++++.++++. .+ ..++++.+||+|||
T Consensus 71 i~~~~~~~~~~~-----~----------~~~~~~~~~~~~~l~~---~~-----------------~~~~~~~~lS~G~k 115 (198)
T cd03276 71 ITVTLKNQGLDA-----N----------PLCVLSQDMARSFLTS---NK-----------------AAVRDVKTLSGGER 115 (198)
T ss_pred EEEEEEcCCccC-----C----------cCCHHHHHHHHHHhcc---cc-----------------ccCCcccccChhHH
Confidence 222333322111 0 0011123456566666 33 24788999999999
Q ss_pred hhhhhhhcc-------------CCCceeecC-------------------CccEEEEEc--CccccccchhhHhhhhhh
Q 018083 267 YNQIVATTF-------------NCPYLSFRD-------------------DKPVVVVTH--GDLLSLTDRARIRTYLGE 311 (361)
Q Consensus 267 QRvaIArAL-------------DEPt~~L~~-------------------g~tvIiiTH--~~~~~~aDri~vvl~~G~ 311 (361)
||++||+|+ |||+++++. +.|||++|| +.+..+ |+|.| |..++
T Consensus 116 ~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~-~~~~~ 192 (198)
T cd03276 116 SFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKV-FRMKD 192 (198)
T ss_pred HHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeE-EEecC
Confidence 999999865 999999542 248999999 556664 99964 77643
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-16 Score=160.08 Aligned_cols=173 Identities=13% Similarity=0.100 Sum_probs=128.0
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.|.+++.+++|.|.++.+ +. +.++++++.--..++++|+||+||||+++++.+-+. |.+|-+.+.+.-
T Consensus 360 ~p~l~i~~V~f~y~p~~y-~~---~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-----~~rgi~~~~~r~--- 427 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY-QW---RKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-----PTRGIVGRHPRL--- 427 (582)
T ss_pred CCeeEEEeeeccCCCcch-hh---hhccCCccchhhhhheeccCchhHHHHHHHHhccCC-----cccceeeecccc---
Confidence 357999999999988763 44 666999999999999999999999999999999888 899988776421
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHH-HH--HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMI-KL--WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~-~~--ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
.+++.+|.---+ .. ...+-.. .. -+...++.++..+..+|+..++
T Consensus 428 -----------------------ri~~f~Qhhvd~l~~~v~~vd~~~---~~----~pG~~~ee~r~hl~~~Gl~g~l-- 475 (582)
T KOG0062|consen 428 -----------------------RIKYFAQHHVDFLDKNVNAVDFME---KS----FPGKTEEEIRRHLGSFGLSGEL-- 475 (582)
T ss_pred -----------------------eecchhHhhhhHHHHHhHHHHHHH---Hh----CCCCCHHHHHHHHHhcCCCchh--
Confidence 122222221111 00 1001111 00 0122567778889999999865
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cc
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GD 295 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~ 295 (361)
+.+....||||||=||++|... ||||.-||. +-.||+||| ..
T Consensus 476 --------------a~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~f 541 (582)
T KOG0062|consen 476 --------------ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEF 541 (582)
T ss_pred --------------hhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHH
Confidence 3455889999999999999886 999999863 557999999 46
Q ss_pred cccccchhhHhhhhhhhcC
Q 018083 296 LLSLTDRARIRTYLGELLG 314 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~ 314 (361)
+...|+.+|+ .++|++..
T Consensus 542 i~~~c~E~Wv-ve~g~vt~ 559 (582)
T KOG0062|consen 542 ISSLCKELWV-VEDGKVTP 559 (582)
T ss_pred HhhcCceeEE-EcCCcEEe
Confidence 7789999985 99998865
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-16 Score=143.01 Aligned_cols=61 Identities=10% Similarity=-0.036 Sum_probs=51.5
Q ss_pred hhccCCchhhhhhhhhhhhcc--------CCCceeecC-----------------CccEEEEEc-CccccccchhhHhhh
Q 018083 255 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH-GDLLSLTDRARIRTY 308 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL--------DEPt~~L~~-----------------g~tvIiiTH-~~~~~~aDri~vvl~ 308 (361)
......+|+||+|+..|++++ |||+++++. +.|+|++|| ..+..+||++. +++
T Consensus 86 ~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~-~l~ 164 (200)
T cd03280 86 EQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKRE-GVE 164 (200)
T ss_pred hcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCC-CeE
Confidence 566778999999999999887 999999642 789999999 56678999995 599
Q ss_pred hhhhcCCC
Q 018083 309 LGELLGIP 316 (361)
Q Consensus 309 ~G~iv~~g 316 (361)
+|+++.++
T Consensus 165 ~g~l~~~~ 172 (200)
T cd03280 165 NASMEFDP 172 (200)
T ss_pred EEEEEEec
Confidence 99997653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-16 Score=171.34 Aligned_cols=199 Identities=15% Similarity=0.120 Sum_probs=139.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+|+|.-+++|+.+.++||.|||||||+++++|-.+... -..|.|.+||.+... +.. ...
T Consensus 131 l~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~--~~~~~isy~G~~~~e---------------~~~---~~~ 190 (1391)
T KOG0065|consen 131 LKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFL--KSSGEITYNGHDLKE---------------FVP---KKT 190 (1391)
T ss_pred ecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccc--cCCCceeECCCcccc---------------ccc---Cce
Confidence 666999999999999999999999999999999887544 346799999988752 111 222
Q ss_pred CcccccchHHHHH-HHHhccccceeEEec---CCChhhhh----hhcccccccCCCcceeEEEEEEEEEEechhhhhhcc
Q 018083 187 SDDASDNINMIKL-WIMEGVRHGELVIRR---SDSSSLRN----RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME 258 (361)
Q Consensus 187 i~~v~q~~~l~~~-ti~~ni~~~~~~~~~---~~~~~~~~----~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~ 258 (361)
++|..|+-..++. |+++-+.|...+... .++-+.++ ..+.+++.+|+.. |..++|+ +...
T Consensus 191 ~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~-------~~dT~VG-----nd~~ 258 (1391)
T KOG0065|consen 191 VAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDH-------CADTLVG-----NDMV 258 (1391)
T ss_pred EEeccccccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchh-------hccceec-----cccc
Confidence 3333333223333 444444444332221 11112222 3457889999975 4444444 4567
Q ss_pred CCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc---CccccccchhhHhhhh
Q 018083 259 GDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH---GDLLSLTDRARIRTYL 309 (361)
Q Consensus 259 ~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH---~~~~~~aDri~vvl~~ 309 (361)
...|||||+|+.+|-++ ||+|.|||. +.|++++-| .+...+.|.|. +|.+
T Consensus 259 RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~-lL~e 337 (1391)
T KOG0065|consen 259 RGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVI-LLSE 337 (1391)
T ss_pred ccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhhee-eeec
Confidence 78999999999999998 999999863 888888888 57888999996 5999
Q ss_pred hhhcCCCCcccccc--------CCCCCCCCchhhhhh
Q 018083 310 GELLGIPPAKQIFD--------IPESSDPENELIIVD 338 (361)
Q Consensus 310 G~iv~~g~~~~i~~--------~~~~~~~~~~~~~~~ 338 (361)
|+++..|+.+++.. .|....+++++..+.
T Consensus 338 G~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vt 374 (1391)
T KOG0065|consen 338 GYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVT 374 (1391)
T ss_pred cceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhh
Confidence 99999999988643 355555566655443
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-15 Score=149.66 Aligned_cols=158 Identities=15% Similarity=0.209 Sum_probs=105.9
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcc---cccccccceeeecccccCcceEeEeeeecCCCcceeeeec
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEN---DKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 183 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~---~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~ 183 (361)
|+|+||+|++|++++|+|+||||||||+++|+|.... +.|.|++|.|.+--..+. ..++. .+
T Consensus 399 lr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-------a~iPg---e~----- 463 (593)
T COG2401 399 LRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-------ALIPG---EY----- 463 (593)
T ss_pred eeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-------hccCc---cc-----
Confidence 5669999999999999999999999999999997653 346789998876432211 01110 00
Q ss_pred CCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchh
Q 018083 184 RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 263 (361)
Q Consensus 184 r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSG 263 (361)
++.+-.-++.+++.. ....-..+.++|.++|+.+.+ +..+..++||-
T Consensus 464 ---------Ep~f~~~tilehl~s---------~tGD~~~AveILnraGlsDAv---------------lyRr~f~ELSt 510 (593)
T COG2401 464 ---------EPEFGEVTILEHLRS---------KTGDLNAAVEILNRAGLSDAV---------------LYRRKFSELST 510 (593)
T ss_pred ---------ccccCchhHHHHHhh---------ccCchhHHHHHHHhhccchhh---------------hhhccHhhcCc
Confidence 011111133333331 011112355678999998855 56788999999
Q ss_pred hhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cccccc-cchhhHhhhhhhhc
Q 018083 264 EKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSL-TDRARIRTYLGELL 313 (361)
Q Consensus 264 GqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~-aDri~vvl~~G~iv 313 (361)
||+.|..||+++ ||-.+-||+ +.|++++|| +....+ -|++.+ +.-|+..
T Consensus 511 GQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~-vgYg~v~ 588 (593)
T COG2401 511 GQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLIL-VGYGKVP 588 (593)
T ss_pred chHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEE-eeccccc
Confidence 999999999999 555555543 999999999 444455 588843 5555543
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-15 Score=149.24 Aligned_cols=168 Identities=18% Similarity=0.227 Sum_probs=108.5
Q ss_pred cceeeecCcceeeccccceeccC-CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee-----------ecc
Q 018083 90 NKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 157 (361)
Q Consensus 90 nl~~~Y~~~~~~~~l~~L~~is~-~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~-----------i~G 157 (361)
++.-+|+.+. ++--.+ ..++|.+++|+||||-||||.+|+|+|-+. |.=|+-. |.|
T Consensus 79 e~vHRYg~Ng-------FkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~-----PNLG~~~~pp~wdeVi~~FrG 146 (591)
T COG1245 79 EVVHRYGVNG-------FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELK-----PNLGRYEDPPSWDEVIKRFRG 146 (591)
T ss_pred cceeeccCCc-------eEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc-----cCCCCCCCCCCHHHHHHHhhh
Confidence 4667887654 333455 356799999999999999999999999999 6655321 111
Q ss_pred cccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 158 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 158 ~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
..+. .|+. .+.+---....-+|-....|..+...+..-+. +...+-...++.+.++|..
T Consensus 147 tELq-~YF~------------~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk------~~de~g~~devve~l~L~n-- 205 (591)
T COG1245 147 TELQ-NYFK------------KLYEGELRAVHKPQYVDLIPKVVKGKVGELLK------KVDERGKFDEVVERLGLEN-- 205 (591)
T ss_pred hHHH-HHHH------------HHHcCCcceecchHHHHHHHHHhcchHHHHHH------hhhhcCcHHHHHHHhcchh--
Confidence 1110 0000 01111111112256666666544433332111 1111234566788889988
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec----------------CCccEEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVT 292 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~----------------~g~tvIiiT 292 (361)
++++..++||||+.||+|||.|+ |||++-|| ++++||+|.
T Consensus 206 ---------------vl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVE 270 (591)
T COG1245 206 ---------------VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVE 270 (591)
T ss_pred ---------------hhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 67999999999999999999998 99999864 279999999
Q ss_pred cCcc--ccccchhhH
Q 018083 293 HGDL--LSLTDRARI 305 (361)
Q Consensus 293 H~~~--~~~aDri~v 305 (361)
|+.+ --++|-|.|
T Consensus 271 HDLavLD~lsD~vhI 285 (591)
T COG1245 271 HDLAVLDYLSDFVHI 285 (591)
T ss_pred chHHHHHHhhheeEE
Confidence 9543 356788853
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-14 Score=144.64 Aligned_cols=154 Identities=13% Similarity=0.136 Sum_probs=104.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..|+|-+-+|+|.|++.. +. ++.++|-|.-...++||||||.|||||+++|.|-+. |+.|+..-+- .+.
T Consensus 583 ~PPvLGlH~VtFgy~gqk--pL---FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-----P~~GE~RKnh-rL~ 651 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQK--PL---FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-----PNDGELRKNH-RLR 651 (807)
T ss_pred CCCeeecccccccCCCCC--ch---hhcccccccccceeEEECCCCccHHHHHHHHhcCCC-----CCcchhhccc-eee
Confidence 446788999999997764 33 667999999999999999999999999999999999 9999876542 222
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcc-cccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~-v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.+++.|.+. ..+ ..|.+..+.... | +.+ -+.++..|-.+||.+..
T Consensus 652 iG~FdQh~~----------------E~L~~Eetp~EyLqr~-----F------Nlp----yq~ARK~LG~fGL~sHA--- 697 (807)
T KOG0066|consen 652 IGWFDQHAN----------------EALNGEETPVEYLQRK-----F------NLP----YQEARKQLGTFGLASHA--- 697 (807)
T ss_pred eechhhhhH----------------HhhccccCHHHHHHHh-----c------CCC----hHHHHHHhhhhhhhhcc---
Confidence 222222110 000 122222222110 1 111 23444567778886521
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhc-c--------CCCceeecC-------------CccEEEEEc
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT-F--------NCPYLSFRD-------------DKPVVVVTH 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArA-L--------DEPt~~L~~-------------g~tvIiiTH 293 (361)
-.-.+..|||||+-||++|-. + ||||..|+- .-.||||||
T Consensus 698 -------------HTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsH 759 (807)
T KOG0066|consen 698 -------------HTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSH 759 (807)
T ss_pred -------------ceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEec
Confidence 023456899999999999864 3 999999752 557999999
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.3e-14 Score=146.74 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=68.3
Q ss_pred hhhccCCchhhhhhhhhhhhcc------------CCCceee----------------cCCccEEEEEc-Cccccccchhh
Q 018083 254 LKSMEGDSDVEKQYNQIVATTF------------NCPYLSF----------------RDDKPVVVVTH-GDLLSLTDRAR 304 (361)
Q Consensus 254 ~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L----------------~~g~tvIiiTH-~~~~~~aDri~ 304 (361)
+.++..+||||+.||+-+|.-| ||||.|| +.|.|||+|.| -++.+.||.|
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I- 894 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI- 894 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE-
Confidence 5889999999999999999988 9999995 34999999999 6888999999
Q ss_pred Hhh------hhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 305 IRT------YLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 305 vvl------~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+-| ..|+|++.|+|+++...+ .+++..++.
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~-~S~Tg~yLk 930 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVK-ASYTGKYLK 930 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCc-cchhHHHHH
Confidence 433 468999999999999876 567666554
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-13 Score=127.25 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=28.7
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++++++++.+| +.+|+||||||||||+.+|.-.+-
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~ 48 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLG 48 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 33466777777 778999999999999999987775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.7e-14 Score=158.55 Aligned_cols=93 Identities=17% Similarity=0.062 Sum_probs=74.1
Q ss_pred hcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeec--------
Q 018083 224 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFR-------- 283 (361)
Q Consensus 224 v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~-------- 283 (361)
..+.|..+||.-- .+.+...+|||||.||+-||.-| ||||.||+
T Consensus 1679 ~L~~L~~vGLgYl----------------~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll 1742 (1809)
T PRK00635 1679 PLQALIDNGLGYL----------------PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL 1742 (1809)
T ss_pred HHHHHHHcCCCee----------------eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH
Confidence 3456778888642 25899999999999999999887 99999964
Q ss_pred --------CCccEEEEEc-CccccccchhhHhh------hhhhhcCCCCccccccCCCCCCCCchh
Q 018083 284 --------DDKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 284 --------~g~tvIiiTH-~~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
.|.|||+|.| .++.+.||.| |-| +.|+|++.|+|+++...+. +++..++
T Consensus 1743 ~~l~~L~~~g~tvivieH~~~~i~~aD~i-idlgp~gG~~GG~iva~Gtp~~i~~~~~-S~t~~~l 1806 (1809)
T PRK00635 1743 VQLRTLVSLGHSVIYIDHDPALLKQADYL-IEMGPGSGKTGGKILFSGPPKDISASKD-SLLKTYM 1806 (1809)
T ss_pred HHHHHHHhcCCeEEEEeCCHHHHHhCCEE-EEcCCCcccCCCEEEEEeCHHHHhhCCC-CcHHHHh
Confidence 3999999999 5777779999 444 4589999999999988764 4554443
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.8e-13 Score=109.91 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=60.0
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|++++|++++|++++|+||||||||||++++. +|++.++|.++. .+...+....
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----------~G~i~~~g~di~---------------~~~~~~~~~~ 58 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI-----------KRKHRLVGDDNV---------------EIREDSKDEL 58 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----------CCeEEEeeEeHH---------------HhhhhhcCCE
Confidence 56699999999999999999999999999975 478999998875 2222233444
Q ss_pred CcccccchHHHHHHHHhcccccee
Q 018083 187 SDDASDNINMIKLWIMEGVRHGEL 210 (361)
Q Consensus 187 i~~v~q~~~l~~~ti~~ni~~~~~ 210 (361)
.++++|+ +|..++.+||.+...
T Consensus 59 ~~~~~q~--lf~~ti~~Ni~~~~~ 80 (107)
T cd00820 59 IGRNPEL--GLEIRLRLNIFLITK 80 (107)
T ss_pred EEEechh--cchhhHHhhceeeeE
Confidence 5667777 777899999998544
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-13 Score=121.26 Aligned_cols=63 Identities=8% Similarity=-0.103 Sum_probs=45.2
Q ss_pred ccCCchhhhhhhhhhhhcc--------CCCceeecC-----------------CccEEEEEc-CccccccchhhHhhhhh
Q 018083 257 MEGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH-GDLLSLTDRARIRTYLG 310 (361)
Q Consensus 257 ~~~~LSGGqrQRvaIArAL--------DEPt~~L~~-----------------g~tvIiiTH-~~~~~~aDri~vvl~~G 310 (361)
..+.++.+++|...|+..+ |||++++++ +.++|++|| .++...|+++. .+..+
T Consensus 88 ~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~-~l~~~ 166 (202)
T cd03243 88 GRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVP-GVKNL 166 (202)
T ss_pred CceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCC-CeEEE
Confidence 3446777777776666543 888888542 789999999 56667788874 48888
Q ss_pred hhcCCCCccc
Q 018083 311 ELLGIPPAKQ 320 (361)
Q Consensus 311 ~iv~~g~~~~ 320 (361)
++...+...+
T Consensus 167 ~~~~~~~~~~ 176 (202)
T cd03243 167 HMEELITTGG 176 (202)
T ss_pred EEEEEecCCe
Confidence 8877765433
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.4e-13 Score=125.52 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=84.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
.+|++|+++++++++|.||||||||||+++|+-+.- ....|
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~----la~~g----------------------------------- 60 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVL----MAQIG----------------------------------- 60 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHH----HHHhC-----------------------------------
Confidence 566999999999999999999999999999873211 00011
Q ss_pred CcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhh
Q 018083 187 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 266 (361)
Q Consensus 187 i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 266 (361)
.+||.+... -..+.+++..+++.+. ....+|.|++
T Consensus 61 -~~vpa~~~~------------------------~~~~~~il~~~~l~d~--------------------~~~~lS~~~~ 95 (222)
T cd03285 61 -CFVPCDSAD------------------------IPIVDCILARVGASDS--------------------QLKGVSTFMA 95 (222)
T ss_pred -CCcCcccEE------------------------EeccceeEeeeccccc--------------------hhcCcChHHH
Confidence 012211100 0012234555666542 2456777777
Q ss_pred hhhhhhhcc-----------CCC---ceeec---------------CCccEEEEEc-CccccccchhhHhhhhhhhcCCC
Q 018083 267 YNQIVATTF-----------NCP---YLSFR---------------DDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 267 QRvaIArAL-----------DEP---t~~L~---------------~g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g 316 (361)
|+..+++++ ||| |+++| .+.++|++|| .++..+||++. .+++|++....
T Consensus 96 e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~-~i~~g~~~~~~ 174 (222)
T cd03285 96 EMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVP-NVKNLHVTALT 174 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCC-CeEEEEEEEEE
Confidence 777777766 999 66632 2789999999 77888999995 58999987654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.7e-13 Score=126.37 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=44.1
Q ss_pred hhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-CccccccchhhH
Q 018083 255 KSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARI 305 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~v 305 (361)
......|||||+||++||+++ |||+++|+. +.|+|++|| ..+..+||++++
T Consensus 165 ~~~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~ 244 (276)
T cd03241 165 KPLAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFL 244 (276)
T ss_pred chhhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEE
Confidence 344456999999999999741 999999652 779999999 445688999964
Q ss_pred hhhhhhh
Q 018083 306 RTYLGEL 312 (361)
Q Consensus 306 vl~~G~i 312 (361)
+.++..
T Consensus 245 -l~~~~~ 250 (276)
T cd03241 245 -VEKEVE 250 (276)
T ss_pred -EEEecC
Confidence 777644
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-13 Score=134.56 Aligned_cols=193 Identities=16% Similarity=0.105 Sum_probs=114.6
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhh-hcccccccccceeeecccccCcce
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl-~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
|.++|.+++-.+. .. +-+.|+.|-.|..++||||||-|||||++-|+.- +. .|..=.|++..+.+-...
T Consensus 265 IKiEnF~ISA~Gk---~L---FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala----IPpnIDvLlCEQEvvad~ 334 (807)
T KOG0066|consen 265 IKIENFDISAQGK---LL---FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA----IPPNIDVLLCEQEVVADS 334 (807)
T ss_pred ceeeeeeeecccc---ee---eeccceEEEecceecccCCCCCchHHHHHHHHhhhcc----CCCCCceEeeeeeeeecC
Confidence 7788888886553 23 5669999999999999999999999999998642 22 133334444444331000
Q ss_pred EeEeeeecCCCcceeee-ecCCCCcccccchHHHHH------HHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 165 FLQEYTIPRGSNSFSLY-DTRSLSDDASDNINMIKL------WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~-d~r~~i~~v~q~~~l~~~------ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
...+ ...+. |.+ ...+..+...+... ++.+.+.....-.+.......+.+++.+|.-+|+..+.
T Consensus 335 ---t~Ai-----~tvl~aD~k-Rl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEM 405 (807)
T KOG0066|consen 335 ---TSAI-----DTVLKADKK-RLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEM 405 (807)
T ss_pred ---cHHH-----HHHHHhhHH-HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhH
Confidence 0000 00000 000 00111111111100 11111100000000112234456677788888988754
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-- 293 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH-- 293 (361)
-+++...+|||-|.||++|||| ||||..|+- .+|++||+|
T Consensus 406 ----------------Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQ 469 (807)
T KOG0066|consen 406 ----------------QERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ 469 (807)
T ss_pred ----------------hcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEeccc
Confidence 3567778999999999999998 899987641 789999999
Q ss_pred CccccccchhhHhhhhhhhcC
Q 018083 294 GDLLSLTDRARIRTYLGELLG 314 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~ 314 (361)
..+-..|..| |.+++-++-.
T Consensus 470 gFLD~VCtdI-IHLD~qkLhy 489 (807)
T KOG0066|consen 470 GFLDSVCTDI-IHLDNQKLHY 489 (807)
T ss_pred chHHHHHHHH-hhhhhhhhhh
Confidence 5777889988 4588777643
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-12 Score=116.75 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=38.9
Q ss_pred chhhhhhhhhhhhcc-------------CCCceeecC----------------CccEEEEEc-CccccccchhhHhhh
Q 018083 261 SDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTY 308 (361)
Q Consensus 261 LSGGqrQRvaIArAL-------------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~vvl~ 308 (361)
||+||+||++|||++ |||+++++. +.|+|++|| ......||+++. ++
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~-i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIG-VL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEE-EE
Confidence 999999999999974 999999653 689999999 445568999954 54
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.5e-12 Score=111.49 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=39.3
Q ss_pred Cchhhhhhhhhhhhcc-------------CCCceeecC----------------CccEEEEEc-CccccccchhhHhhhh
Q 018083 260 DSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYL 309 (361)
Q Consensus 260 ~LSGGqrQRvaIArAL-------------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~vvl~~ 309 (361)
+||+||+||++||++| |||+++++. +.++|++|| ......+|+++ .|+.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~-~l~~ 155 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLI-HIKK 155 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEE-EEEE
Confidence 4999999999999987 999988542 579999999 45556789985 3543
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.6e-12 Score=119.45 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=36.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+||||||||||+++|+|++. |++|+|.++|+++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-----~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-----TGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-----CCCceEEECCEEee
Confidence 5789999999999999999999999 99999999998874
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-11 Score=122.20 Aligned_cols=140 Identities=11% Similarity=0.135 Sum_probs=89.0
Q ss_pred eccCCCCCc-----eEEEEEccCCCCcchhhhhhhhhhcccccccccc-eeeecccccCcceEeEeeeecCCCcceeeee
Q 018083 109 LSDYDVPKT-----TSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGSNSFSLYD 182 (361)
Q Consensus 109 ~is~~I~~G-----e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d 182 (361)
+..|.|..| |++..+|+||.|||||+++++|.++ |++| +|-.... ++..+.
T Consensus 354 ~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-----pd~~~e~p~lnV------------------Sykpqk 410 (592)
T KOG0063|consen 354 DFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-----PDEGGEIPVLNV------------------SYKPQK 410 (592)
T ss_pred eEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-----CCccCcccccce------------------eccccc
Confidence 366666665 6789999999999999999999999 8766 2221111 111111
Q ss_pred cCCC-CcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCc
Q 018083 183 TRSL-SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 261 (361)
Q Consensus 183 ~r~~-i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~L 261 (361)
.+-. -+-|.| ++-..+++.-. ..+-+.+.++-+.++. ..++-...|
T Consensus 411 ispK~~~tvR~---ll~~kIr~ay~-------------~pqF~~dvmkpL~ie~-----------------i~dqevq~l 457 (592)
T KOG0063|consen 411 ISPKREGTVRQ---LLHTKIRDAYM-------------HPQFVNDVMKPLQIEN-----------------IIDQEVQGL 457 (592)
T ss_pred cCccccchHHH---HHHHHhHhhhc-------------CHHHHHhhhhhhhHHH-----------------HHhHHhhcC
Confidence 1111 111111 11111211111 1123334455566665 458888899
Q ss_pred hhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEcCc--cccccchhh
Q 018083 262 DVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHGD--LLSLTDRAR 304 (361)
Q Consensus 262 SGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH~~--~~~~aDri~ 304 (361)
|||++||+|||.+| |||.+-|+. ++|-.+|.|+. +.-+|||++
T Consensus 458 SggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvi 528 (592)
T KOG0063|consen 458 SGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 528 (592)
T ss_pred CchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeE
Confidence 99999999999999 999988652 88999999954 446799994
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-11 Score=117.77 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=29.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++.++++.+| +.+|+|||||||||++.+|.-+..
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~ 46 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLAT 46 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhcc
Confidence 44477788887 788999999999999999977664
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-11 Score=132.38 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=71.1
Q ss_pred hhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-----------CCCceeecC----
Q 018083 220 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD---- 284 (361)
Q Consensus 220 ~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPt~~L~~---- 284 (361)
+.+++. +++.+||... .+++.+.+|||||+||++||+|| ||||++|++
T Consensus 466 i~~rl~-~L~~vGL~~l----------------~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~ 528 (943)
T PRK00349 466 IRERLK-FLVDVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDND 528 (943)
T ss_pred HHHHHH-HhhccccCCC----------------CCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHH
Confidence 344443 6888888751 15899999999999999999998 999999753
Q ss_pred ------------CccEEEEEc-CccccccchhhHhh------hhhhhcCCCCccccccCC
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~ 325 (361)
|.|||+||| .+....||+|+ +| ++|+++..|+++++...+
T Consensus 529 ~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi-~LgpgaG~~~G~iv~~g~~~e~~~~~ 587 (943)
T PRK00349 529 RLIETLKHLRDLGNTLIVVEHDEDTIRAADYIV-DIGPGAGVHGGEVVASGTPEEIMKNP 587 (943)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE-EeccccCCCCCEEeeccCHHHHhcCh
Confidence 899999999 23345699995 59 999999999998886543
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.8e-11 Score=130.80 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=61.3
Q ss_pred hhhccCCchhhhhhhhhhhhcc-----------CCCceeecC----------------CccEEEEEc-CccccccchhhH
Q 018083 254 LKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 305 (361)
Q Consensus 254 ~~~~~~~LSGGqrQRvaIArAL-----------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~v 305 (361)
+++.+.+|||||+||++||+|| ||||++|++ |.|||+|+| .+....||+++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi- 559 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVI- 559 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEE-
Confidence 4889999999999999999998 999999753 899999999 33445899995
Q ss_pred hh------hhhhhcCCCCccccccCC
Q 018083 306 RT------YLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 306 vl------~~G~iv~~g~~~~i~~~~ 325 (361)
+| ++|+|++.|+++++...+
T Consensus 560 ~LgpgaG~~~G~Iv~~g~~~el~~~~ 585 (924)
T TIGR00630 560 DIGPGAGIHGGEVVASGTPEEILANP 585 (924)
T ss_pred EecccccCCCCEEeeccCHHHHhcCc
Confidence 59 899999999998886543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-10 Score=105.67 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=33.3
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|++|++++|++++|+||||||||||+++|+++.-
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~ 54 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI 54 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 666999999999999999999999999999998764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.7e-10 Score=100.78 Aligned_cols=49 Identities=14% Similarity=-0.025 Sum_probs=37.3
Q ss_pred hhccCCchhhhhhhhhhhhcc--------CCCceeec------------------CCccEEEEEc-Cccccccchh
Q 018083 255 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFR------------------DDKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL--------DEPt~~L~------------------~g~tvIiiTH-~~~~~~aDri 303 (361)
.+..+++|+|++|...+++.. |||+++++ .+.++|++|| .++..+||+.
T Consensus 56 ~~~~s~fs~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~ 131 (185)
T smart00534 56 AQGLSTFMVEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEH 131 (185)
T ss_pred hccccHHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcC
Confidence 667788999999887777763 99998843 1678999999 5566667653
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-10 Score=103.27 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=29.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|++|+. |++++|+||||||||||+|+|++...
T Consensus 17 ~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 17 ANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred cceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 45577776 69999999999999999999998663
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.3e-10 Score=113.24 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=43.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc-eeeecccccC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGD 161 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G~~i~ 161 (361)
|++|||+|++||+++|+||||||||||++ +|+.. |++| +|.++|+++.
T Consensus 22 L~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-----~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 22 LVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-----FSEGYEFFLDATHSF 70 (504)
T ss_pred HhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-----CCCCCEEEECCEECC
Confidence 45599999999999999999999999999 67777 7777 7999999875
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.9e-10 Score=102.18 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=31.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|++|++.+ ++++|+||||||||||+|+|+++.-
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~ 55 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIAL 55 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHH
Confidence 5669999987 8999999999999999999987653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-09 Score=100.73 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=29.2
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.|.+|+.++|+||+|+|||||++.|.+...
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4789999999999999999999999999887
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-09 Score=114.84 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=28.8
Q ss_pred ccCCCCCc-eEEEEEccCCCCcchhhhhhhhh
Q 018083 110 SDYDVPKT-TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 110 is~~I~~G-e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
+|+++..+ ++++|+||||+|||||+|+|+++
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHH
Confidence 68888877 89999999999999999999998
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-09 Score=108.89 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=45.4
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
+.++ +++ |.|.+|++++|+|+||+|||||+++|+++.+ ++.|.|.+.|++.
T Consensus 146 ~~vi---d~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-----~~~gvI~~~Gerg 196 (438)
T PRK07721 146 VRAI---DSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-----ADLNVIALIGERG 196 (438)
T ss_pred hhhh---hee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEEecCC
Confidence 3564 449 9999999999999999999999999999999 8999999977654
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.4e-09 Score=95.27 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=33.4
Q ss_pred Cchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cccccccchhh
Q 018083 260 DSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 304 (361)
Q Consensus 260 ~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~ 304 (361)
.||||||-+++||--| |||.++||+ +.-+|++|| ......||+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~ 209 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLI 209 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999665 888888653 578999999 66777788773
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-08 Score=102.98 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=53.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
.++-+.++..|..+ +.++ +.+ |.+.+|+.++|+|++|+|||||+++|++..+ ++.|.|.+.|+..
T Consensus 130 ~~~r~~i~~~l~TG--iraI---D~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~gvI~~iGerg 194 (432)
T PRK06793 130 AFEREEITDVFETG--IKSI---DSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-----ADINVISLVGERG 194 (432)
T ss_pred chheechhhccCCC--CEEE---ecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC-----CCeEEEEeCCCCc
Confidence 46777787777654 4564 435 9999999999999999999999999999998 8889887777553
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-08 Score=100.99 Aligned_cols=160 Identities=16% Similarity=0.106 Sum_probs=90.7
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee--cccccCcceEeEeeeecCCCcceeeeecCCCCcccc
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY--NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 191 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i--~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~ 191 (361)
-++|+.+++||.||-||||-+++++|-++ |.-|.-.. +++.+. +++.- ..+...+.. .+.+... .-.-+
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~k-----pnlg~~~~pp~w~~il-~~frg-selq~yftk-~le~~lk-~~~kp 167 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRYDNPPDWQEIL-TYFRG-SELQNYFTK-ILEDNLK-AIIKP 167 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCC-----CCCCCCCCCcchHHHh-hhhhh-HHHhhhhhh-hcccccc-CcCCh
Confidence 35799999999999999999999999999 65553211 011110 11100 000000000 1111111 01124
Q ss_pred cchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhh
Q 018083 192 DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 271 (361)
Q Consensus 192 q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaI 271 (361)
|...-++..+..++.--+ .....++...++.+.+.|.. ++++-..+||||+.||.+|
T Consensus 168 Qyvd~ipr~~k~~v~~~l------~~~~~r~~~~~~~~~~~L~~-----------------~~~re~~~lsggelqrfai 224 (592)
T KOG0063|consen 168 QYVDQIPRAVKGTVGSLL------DRKDERDNKEEVCDQLDLNN-----------------LLDREVEQLSGGELQRFAI 224 (592)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHhhcccHHHHHHHHHHhh-----------------HHHhhhhhcccchhhhhhh
Confidence 444433332222221100 11122233445566677766 5688889999999999999
Q ss_pred hhcc---------CCCceeec----------------CCccEEEEEcC-ccc-cccchhhH
Q 018083 272 ATTF---------NCPYLSFR----------------DDKPVVVVTHG-DLL-SLTDRARI 305 (361)
Q Consensus 272 ArAL---------DEPt~~L~----------------~g~tvIiiTH~-~~~-~~aDri~v 305 (361)
|.+- |||.+.|| ++.-||+|.|+ .++ -++|-+.+
T Consensus 225 a~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCc 285 (592)
T KOG0063|consen 225 AMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICC 285 (592)
T ss_pred hhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeE
Confidence 9986 99998854 37789999993 333 55677743
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.7e-08 Score=89.40 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=37.5
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhh-hhcccccccccceee
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVT 154 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g-l~~~~~~~p~~G~I~ 154 (361)
..+++|++.+|++++|+||||+|||||+++|++ .+. +..|...
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-----a~~G~~v 64 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-----AQIGSFV 64 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HhCCCEE
Confidence 666999999999999999999999999999999 555 6667644
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=1e-07 Score=103.67 Aligned_cols=57 Identities=5% Similarity=-0.138 Sum_probs=42.1
Q ss_pred hhccCCchhhhhhhhhhhhcc--------CCCceeecC-----------------CccEEEEEc--CccccccchhhHhh
Q 018083 255 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRT 307 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL--------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl 307 (361)
.+..+++|+||+|++.|++++ |||++|+++ +.++|++|| +.+...+++.. +
T Consensus 385 ~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~--v 462 (782)
T PRK00409 385 EQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREG--V 462 (782)
T ss_pred hhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCC--e
Confidence 567788999999999999986 999999542 789999999 33444456553 3
Q ss_pred hhhhhc
Q 018083 308 YLGELL 313 (361)
Q Consensus 308 ~~G~iv 313 (361)
.++.+.
T Consensus 463 ~~~~~~ 468 (782)
T PRK00409 463 ENASVE 468 (782)
T ss_pred EEEEEE
Confidence 344443
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-07 Score=96.20 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=57.2
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
..+.++.++++..|..+ +.+++. ++ +|.+|++++|+||||||||||+++|+++.+ |+.|.|.+.|++
T Consensus 136 ~p~~~~r~~v~~~l~TG--i~aID~---L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-----pd~gvv~liGer 202 (450)
T PRK06002 136 APPAMTRARVETGLRTG--VRVIDI---FT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-----FDTVVIALVGER 202 (450)
T ss_pred CCCCeEeecceEEcCCC--cEEeee---ec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCeeeeeecccC
Confidence 44578999999999765 567555 75 999999999999999999999999999998 899998886543
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.2e-08 Score=104.29 Aligned_cols=72 Identities=22% Similarity=0.332 Sum_probs=64.2
Q ss_pred hhhccCCchhhhhhhhhhhhcc-----------CCCceeecC----------------CccEEEEEc-CccccccchhhH
Q 018083 254 LKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 305 (361)
Q Consensus 254 ~~~~~~~LSGGqrQRvaIArAL-----------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~v 305 (361)
+++...+||||+.||+-||.-+ |||..||.+ |.|+|+|.| .+....||+| |
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~i-I 553 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHI-I 553 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEE-E
Confidence 4788899999999999999988 999999753 999999999 6888999999 4
Q ss_pred h------hhhhhhcCCCCccccccCCC
Q 018083 306 R------TYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 306 v------l~~G~iv~~g~~~~i~~~~~ 326 (361)
- .+.|+|++.|++++++..++
T Consensus 554 DiGPgAG~~GGeIv~~Gtp~~i~~~~~ 580 (935)
T COG0178 554 DIGPGAGEHGGEIVAEGTPEELLANPE 580 (935)
T ss_pred eeCCCCCcCCCEEEEccCHHHHHhCCc
Confidence 3 46799999999999999875
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.2e-08 Score=86.35 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=40.0
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 157 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 157 (361)
+.+.+++|+.++|+||||||||||+++|+++++ |+.|.|.+.+
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-----~~~~~i~ied 60 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIP-----PDERIITIED 60 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEECC
Confidence 777899999999999999999999999999999 8889998865
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-07 Score=94.54 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHhHHHHH---hhhccccccccceeeecCcceeeccccce-----------eccCCCCCceEEEEEccCCC
Q 018083 63 RRDAVFREVLQSYDQLR---TRIGSLTDAKNKILSYTPGAWIENVGGMT-----------LSDYDVPKTTSLLLIGPKGS 128 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~---~~~~~~lei~nl~~~Y~~~~~~~~l~~L~-----------~is~~I~~Ge~vaLvGpnGS 128 (361)
+...|+.+++...+... .....-++++||++.|++.. .+ |+ |+.+.|.+|++++|+||+||
T Consensus 105 ~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~er--~~---Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~ 179 (415)
T TIGR00767 105 KEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNER--LR---LETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKA 179 (415)
T ss_pred ccHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCCcc--ce---eecCccccceeeeeeEEEeCCCCEEEEECCCCC
Confidence 34559999997655421 22344699999999998654 34 54 69999999999999999999
Q ss_pred Ccchhhhhhhhhhc
Q 018083 129 GKSSLVNRISKVFE 142 (361)
Q Consensus 129 GKSTLl~~I~gl~~ 142 (361)
|||||++.|...+.
T Consensus 180 GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 180 GKTVLLQKIAQAIT 193 (415)
T ss_pred ChhHHHHHHHHhhc
Confidence 99999999999886
|
Members of this family differ in the specificity of RNA binding. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-07 Score=84.59 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=25.3
Q ss_pred CCccEEEEEc-CccccccchhhHhhhhhhhcCC
Q 018083 284 DDKPVVVVTH-GDLLSLTDRARIRTYLGELLGI 315 (361)
Q Consensus 284 ~g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~ 315 (361)
.+.++|+++| ..+..++|+|. .+.+|+|+..
T Consensus 125 ~~~~~i~v~h~~~~~~~~~~i~-~~~~~~i~~~ 156 (174)
T PRK13695 125 SEKPVIATLHRRSVHPFVQEIK-SRPGGRVYEL 156 (174)
T ss_pred CCCeEEEEECchhhHHHHHHHh-ccCCcEEEEE
Confidence 4789999999 56667899995 6999988665
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-07 Score=90.60 Aligned_cols=42 Identities=14% Similarity=0.372 Sum_probs=38.2
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
+++.+..|+.++|+||+|||||||+++|+++++ +..+.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-----~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-----KDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-----ccccEEEEc
Confidence 677899999999999999999999999999998 888877774
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.4e-07 Score=93.27 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=40.8
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 158 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 158 (361)
+.++++ + |+|.+|++++|+|+||||||||+++|+++.+. .+.|.|.+.|+
T Consensus 152 i~aID~---~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~----~~~~vi~liGe 201 (442)
T PRK06315 152 VRCIDG---M-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE----ADVNVIALIGE 201 (442)
T ss_pred EEEEec---c-ccccCCcEEEEECCCCCCcchHHHHhhccccc----CCceEEEEECC
Confidence 567555 8 99999999999999999999999999998851 34466766553
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-06 Score=81.22 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=23.7
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
++++=..+.+++|+||||+|||||+|.|..
T Consensus 22 ~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 22 TEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 444422237899999999999999999984
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.9e-07 Score=96.57 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=26.0
Q ss_pred CCCCceEEEEEccCCCCcchhhhhh--hhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRI--SKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I--~gl~~ 142 (361)
=+++|..+.|.||+|||||||...+ .|+.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~ 48 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH 48 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999876 45554
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-06 Score=88.69 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=54.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
+.++.+.++..|..+ +.++++ + |+|.+|++++|+|+||+|||||+++|+++.. ++.|.+.+.|..
T Consensus 128 ~~~~r~~v~~~l~tG--i~aID~---l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~-----~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMTG--IRAIDS---V-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD-----ADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCCC--ceeeee---e-eecCCCCEEEEECCCCCCccHHHHHhcCCCC-----CCEEEEEEECCC
Confidence 357778888888544 567555 9 9999999999999999999999999999998 888888777764
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.1e-07 Score=79.73 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=29.7
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
|++++|+||||||||||+++|++.+. + .+.+.+..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~---~~~~~~~~~ 37 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----T---QLLVAHRYI 37 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----C---eEEEcCEEC
Confidence 68999999999999999999999887 4 355555444
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=1e-06 Score=65.95 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=28.2
Q ss_pred ccCCCCC-ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPK-TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~-Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++++.+ |.+++|.||||||||||+.+|.=++-
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 5566664 56999999999999999999988887
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.6e-06 Score=77.98 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=32.2
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+|++++|+||||||||||+++|++++. + +.++|.++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-----~----~~i~gd~~~ 38 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-----A----KFIDGDDLH 38 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-----C----EEECCcccC
Confidence 589999999999999999999999998 5 477776653
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-06 Score=80.13 Aligned_cols=24 Identities=38% Similarity=0.769 Sum_probs=21.3
Q ss_pred EEEEEccCCCCcchhh-hhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLV-NRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl-~~I~gl~~ 142 (361)
.++|+|++|||||||+ +.+.|.+.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~ 35 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFE 35 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999 57888775
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-06 Score=79.49 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=27.4
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
=++|++++|+||||||||||+++|++++.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 37899999999999999999999999997
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.8e-06 Score=78.42 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=26.4
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999875
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.7e-06 Score=83.65 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=46.6
Q ss_pred ceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 91 KILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 91 l~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
++..|..+ +.++++ + |.+.+|++++|+|+||+|||||+++|+++.. ++.|.+.+-|.+
T Consensus 49 ~~~~l~tG--i~aiD~---l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGer 106 (326)
T cd01136 49 IDEVLPTG--VRAIDG---L-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGER 106 (326)
T ss_pred ceeEcCCC--cEEEee---e-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEecC
Confidence 33445433 467555 9 9999999999999999999999999999998 887877766644
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.6e-06 Score=86.72 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=35.1
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.++++ + |+|.+|++++|+||||||||||+++|+|+.+
T Consensus 143 i~aID~---l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 143 VNAING---L-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred eeeccc---e-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence 567555 9 9999999999999999999999999999998
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.6e-06 Score=75.68 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=30.0
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++++++|+. .|++++- ++.|+|.||||||||+.+|+-...
T Consensus 23 lPa~r~l~~-~LeF~ap-IT~i~GENGsGKSTLLEaiA~~~~ 62 (233)
T COG3910 23 LPAFRHLEE-RLEFRAP-ITFITGENGSGKSTLLEAIAAGMG 62 (233)
T ss_pred chHHHhhhh-hccccCc-eEEEEcCCCccHHHHHHHHHhhcc
Confidence 466666552 4555553 889999999999999999976665
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.5e-06 Score=86.73 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=44.8
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccc---ceeeecccccC
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSVGD 161 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~---G~I~i~G~~i~ 161 (361)
+.+ ++++ ++|.+|++++|+|+||||||||+++|++... ++. |.|...|.++.
T Consensus 139 i~a---id~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~-----~dv~v~g~Ig~rg~ev~ 193 (428)
T PRK08149 139 VRA---IDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE-----ADVFVIGLIGERGREVT 193 (428)
T ss_pred cEE---Eeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC-----CCeEEEEEEeeCCccHH
Confidence 467 4449 9999999999999999999999999999988 554 88888887764
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.5e-06 Score=78.51 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=30.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhccccccccccee
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 153 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I 153 (361)
.+..+++|.||||||||||+++|+++++ +..|.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~-----~~~g~~ 64 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ-----QDGELP 64 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh-----hccCCc
Confidence 4568999999999999999999999999 888883
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.6e-06 Score=87.27 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=54.1
Q ss_pred cccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 88 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 88 i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+.+++..|+.. .+ ++.+++.+..|+.++|+||||||||||+++|.|+++ |.+|++.+....+.
T Consensus 187 ~~d~~~v~Gq~---~~---~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp-----p~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQE---QG---KRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP-----DLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECcH---HH---HhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCCcEEEecchhh
Confidence 45788778653 45 445999999999999999999999999999999999 99999998887653
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.7e-06 Score=84.06 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=41.3
Q ss_pred ceeccCCC---CCceE-----EEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 107 MTLSDYDV---PKTTS-----LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 107 L~~is~~I---~~Ge~-----vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
++.+++.+ ++|+. ++|+|++|||||||++.|.+++.... ...|.|.++|..+.
T Consensus 82 l~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g--~~~g~IsiDdfYLt 142 (347)
T PLN02796 82 EDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATG--RRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccC--CceeEEEECCcccc
Confidence 44588887 56665 99999999999999999999998210 13688899886653
|
|
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.4e-06 Score=83.60 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=50.2
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
++-+.++--+..+ +.+ ++ .+|+|.+|++++|+|+||+|||||+++|++..+ |+.|.|.+.|+..
T Consensus 115 ~~R~~i~~~l~tG--i~a---iD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~-----~~~gvi~~iGer~ 178 (418)
T TIGR03498 115 MSRARVGEPLDTG--VRV---ID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD-----ADVVVIALVGERG 178 (418)
T ss_pred hhccCcccccCCc--cEE---Ee-eeccccCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEeeec
Confidence 4444444444333 344 43 689999999999999999999999999999998 8899888888654
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.5e-06 Score=94.69 Aligned_cols=56 Identities=7% Similarity=0.031 Sum_probs=47.2
Q ss_pred hhhhccCCchhhhhhhhhhhhcc-------------------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 253 VLKSMEGDSDVEKQYNQIVATTF-------------------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 253 ~~~~~~~~LSGGqrQRvaIArAL-------------------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
...+.+..|||||++|++||+|| |||+++||+ |++|+|||| ..
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF 1022 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 44778899999999999998875 999999764 889999999 56
Q ss_pred cccccchhhHhhhh
Q 018083 296 LLSLTDRARIRTYL 309 (361)
Q Consensus 296 ~~~~aDri~vvl~~ 309 (361)
...+||+|.| ++.
T Consensus 1023 ~~~~~~~i~v-~~~ 1035 (1042)
T TIGR00618 1023 RERIPHRILV-KKT 1035 (1042)
T ss_pred HHhhCCEEEE-EEC
Confidence 7789999964 654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03496 FliI_clade1 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.7e-06 Score=82.93 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=52.0
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
+.++-+.++..|..+ +.+++. + |+|.+|++++|+|+||+|||||+++|+++.. ++.+.+...|++
T Consensus 110 ~~~~R~~~~~~~~tG--i~~id~---l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~-----~~~~vi~~iGer 174 (411)
T TIGR03496 110 NPLKRAPIDEPLDVG--VRAING---L-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE-----ADVVVVGLIGER 174 (411)
T ss_pred CHHhccCcceEeeee--EEeecc---e-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEEecC
Confidence 345666677777544 567555 8 9999999999999999999999999999998 777766666654
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.3e-06 Score=88.87 Aligned_cols=52 Identities=12% Similarity=0.039 Sum_probs=43.1
Q ss_pred CCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-CccccccchhhHhhhh
Q 018083 259 GDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYL 309 (361)
Q Consensus 259 ~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~ 309 (361)
..|||||+||++||+++ |||+++++. +.+||+||| ...+.+||+++ ++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~-~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHF-KVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEE-EEEE
Confidence 57999999999999875 999999642 899999999 44456899995 5888
Q ss_pred hh
Q 018083 310 GE 311 (361)
Q Consensus 310 G~ 311 (361)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 75
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.3e-06 Score=83.64 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=45.0
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
+.++++ + |++.+|++++|+|+||+|||||+++|++... ++.|.+.+.|+..
T Consensus 151 i~~ID~---l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~-----~d~~vi~~iGer~ 201 (441)
T PRK09099 151 VRIVDG---L-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ-----CDVNVIALIGERG 201 (441)
T ss_pred ceeccc---e-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEccCh
Confidence 466555 9 9999999999999999999999999999998 8889888888653
|
|
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.3e-06 Score=82.64 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=44.4
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
+.++++ + |.+.+|++++|+|+||+|||||+++|++... ++.|.+.+.|.+.
T Consensus 133 ~~~id~---l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~~~ 183 (422)
T TIGR02546 133 VRAIDG---L-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS-----ADVNVIALIGERG 183 (422)
T ss_pred ceeehh---h-ccccCCCEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEccCC
Confidence 456444 9 9999999999999999999999999999998 8888888866543
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.4e-06 Score=83.32 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=43.0
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
+.++++ + |.|.+|++++|+|+||+|||||+++|++..+ ++.|.+...|..
T Consensus 151 i~~iD~---l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~r 200 (440)
T TIGR01026 151 VRSIDG---L-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-----ADVNVIALIGER 200 (440)
T ss_pred eeeeee---c-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCEEEEEEEeec
Confidence 467444 8 9999999999999999999999999999998 887777666654
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.5e-06 Score=82.81 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=44.0
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccc---ceeeecccccC
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSVGD 161 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~---G~I~i~G~~i~ 161 (361)
+.+++. + |+|.+|++++|+|+||+|||||+++|+++.+ ++. |.|.+.|.++.
T Consensus 163 iraID~---l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~-----~d~iv~g~Igerg~ev~ 217 (455)
T PRK07960 163 VRAINA---L-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ-----ADVIVVGLIGERGREVK 217 (455)
T ss_pred ceeeee---c-ccccCCcEEEEECCCCCCccHHHHHHhCCCC-----CCEEEEEEEEECCeEHH
Confidence 455444 5 9999999999999999999999999999998 664 88888887764
|
|
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=97.85 E-value=8e-06 Score=82.84 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=48.4
Q ss_pred ceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 91 KILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 91 l~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
++..|..+ +.++++ + |.+.+|++++|+|++|+|||||+++|++..+ ++.|.|.+.|++.
T Consensus 117 ~~~~~~tG--i~~iD~---l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~-----~~~gvi~~~Ger~ 175 (413)
T TIGR03497 117 IRDPLETG--IKAIDG---L-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK-----ADINVIALIGERG 175 (413)
T ss_pred hhhhcccc--ceeeee---E-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEccch
Confidence 34445433 466444 9 9999999999999999999999999999998 8889888888654
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.1e-05 Score=80.35 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=26.1
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++..++|+||+||||||++++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999985
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.1e-06 Score=82.21 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=42.3
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
++.+.-.+++|++++|+|+||+|||||+|+|+|... +..|+|.+++..
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-----~~~G~i~~~~~~ 232 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-----QKTGAVREDDSK 232 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-----cceeeEEECCCC
Confidence 444666788999999999999999999999999999 999999988644
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.9e-06 Score=72.65 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=36.4
Q ss_pred hhccCCchhhhhh-----hhhhhhcc----------CCCceeec-------------------CCccEEEEEc--Cc---
Q 018083 255 KSMEGDSDVEKQY-----NQIVATTF----------NCPYLSFR-------------------DDKPVVVVTH--GD--- 295 (361)
Q Consensus 255 ~~~~~~LSGGqrQ-----RvaIArAL----------DEPt~~L~-------------------~g~tvIiiTH--~~--- 295 (361)
+..+..+|+|++| +..+.+++ |||++.++ .|.|+|+++| ..
T Consensus 66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~ 145 (187)
T cd01124 66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGT 145 (187)
T ss_pred ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCc
Confidence 5567788999887 23333332 99987654 2889999999 22
Q ss_pred ------cccccchhhHhhh
Q 018083 296 ------LLSLTDRARIRTY 308 (361)
Q Consensus 296 ------~~~~aDri~vvl~ 308 (361)
+..+||.++ .|+
T Consensus 146 ~~~~~~~~~~aD~ii-~l~ 163 (187)
T cd01124 146 GFGGGDVEYLVDGVI-RLR 163 (187)
T ss_pred ccCcCceeEeeeEEE-EEE
Confidence 568899884 465
|
A related protein is found in archaea. |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.8e-06 Score=87.77 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=42.4
Q ss_pred hhccCCchhhhhhhhhhhhcc-------------------CCCc-eeecC--------------CccEEEEEc-Cccccc
Q 018083 255 KSMEGDSDVEKQYNQIVATTF-------------------NCPY-LSFRD--------------DKPVVVVTH-GDLLSL 299 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL-------------------DEPt-~~L~~--------------g~tvIiiTH-~~~~~~ 299 (361)
+..+..|||||+||++||+|| |||+ ++|+. +.|||+||| ......
T Consensus 463 ~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~~ 542 (562)
T PHA02562 463 DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQK 542 (562)
T ss_pred ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchhh
Confidence 445678999999999999652 9998 66542 789999999 556678
Q ss_pred cchhhHhhhh
Q 018083 300 TDRARIRTYL 309 (361)
Q Consensus 300 aDri~vvl~~ 309 (361)
||+++ +|.+
T Consensus 543 ~d~~~-~l~~ 551 (562)
T PHA02562 543 FDRHL-KMEK 551 (562)
T ss_pred hhcEE-EEEE
Confidence 99995 4765
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.3e-05 Score=71.24 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=24.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|++++|+||||||||||++.|++.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999886
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.2e-05 Score=77.93 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=33.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
-.++||.||||||||||+++|.+++.. .|.+|.|.+.+.|.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~---~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSR---WPEHRKVELITTDG 102 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhh---cCCCCceEEEeccc
Confidence 369999999999999999999999962 15678877766553
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.5e-06 Score=92.26 Aligned_cols=61 Identities=11% Similarity=0.038 Sum_probs=48.8
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GD 295 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~ 295 (361)
.+.+.++...+..+..|||||+||++||+++ |||+++|+. +.++||||| ..
T Consensus 1074 ~~~~~~~~~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~ 1153 (1179)
T TIGR02168 1074 EIFAQPPGKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKG 1153 (1179)
T ss_pred eEEEeCCCCccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChh
Confidence 3445555566789999999999999999974 999999753 678999999 45
Q ss_pred cccccchhhH
Q 018083 296 LLSLTDRARI 305 (361)
Q Consensus 296 ~~~~aDri~v 305 (361)
...+||+++.
T Consensus 1154 ~~~~~d~~~~ 1163 (1179)
T TIGR02168 1154 TMEVADQLYG 1163 (1179)
T ss_pred HHHHhhhHee
Confidence 5678999953
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK08472 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.3e-05 Score=81.64 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=49.4
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+=+-++..|..+ +.++++ + +++.+|++++|+|+||+|||||+++|++... ++.+.|...|++..
T Consensus 133 ~R~~i~~~l~tg--i~aid~---l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~-----~~v~vi~~iGergr 196 (434)
T PRK08472 133 KRGLIDEVFSVG--VKSIDG---L-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL-----APIKVVALIGERGR 196 (434)
T ss_pred HcCCcceeccch--hHHhhh---c-ceecCCCEEEEECCCCCCHHHHHHHHhhccC-----CCEEEEEeeCccch
Confidence 333444445332 356555 8 9999999999999999999999999999887 77788887776643
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.6e-05 Score=74.42 Aligned_cols=56 Identities=16% Similarity=0.342 Sum_probs=40.9
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-.+++..+.+.++.....+..|.+++| +++|+.+.|+||+|+|||+|+.+|+....
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345666666654322123333556999 99999999999999999999999976654
|
|
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.2e-05 Score=74.87 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=22.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++||.||||||||||++.|.+++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999997
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=7.5e-06 Score=86.08 Aligned_cols=51 Identities=10% Similarity=-0.006 Sum_probs=41.9
Q ss_pred Cchhhhhhhhhhhhcc-------------CCCceeec---------------CCccEEEEEc-CccccccchhhHhhhhh
Q 018083 260 DSDVEKQYNQIVATTF-------------NCPYLSFR---------------DDKPVVVVTH-GDLLSLTDRARIRTYLG 310 (361)
Q Consensus 260 ~LSGGqrQRvaIArAL-------------DEPt~~L~---------------~g~tvIiiTH-~~~~~~aDri~vvl~~G 310 (361)
.|||||+||++||+++ |||+++++ .+.+||+||| ..++.+||+.+ ++.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~-~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHF-FVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEE-EEecc
Confidence 4899999999999887 99999964 2789999999 55668999995 47664
Q ss_pred h
Q 018083 311 E 311 (361)
Q Consensus 311 ~ 311 (361)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 3
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.5e-05 Score=71.07 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=28.0
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
|+++++..+++.+ +|+|++|||||||++.+.+
T Consensus 10 ~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 10 LSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 5558999888755 9999999999999999987
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.2e-05 Score=77.16 Aligned_cols=41 Identities=17% Similarity=0.419 Sum_probs=37.5
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
++|++++|+|||||||||++..|++.+. +..++|.+.+.|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~-----~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK-----AQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCeEEEEecCc
Confidence 5789999999999999999999999998 7778999888775
|
|
| >PRK05922 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=1.9e-05 Score=80.47 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=42.9
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
+.+++. + +.|.+|+.++|+||||+|||||+++|++..+ ++.|.+...|..
T Consensus 145 Ir~ID~---l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~-----~d~gvi~liGer 194 (434)
T PRK05922 145 IKAIDA---F-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK-----STINVIALIGER 194 (434)
T ss_pred ceeecc---e-EEEcCCcEEEEECCCCCChHHHHHHHhccCC-----CCceEEEEeCCC
Confidence 566555 6 9999999999999999999999999999988 888887666654
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.72 E-value=1.7e-05 Score=71.78 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|+||||||||||+++|.+++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999984
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=1.8e-05 Score=81.72 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=35.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccce
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 152 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~ 152 (361)
+++.++.+++|.+++|+|||||||||++..|++.+. ...|.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~-----~~~G~ 286 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV-----MRHGA 286 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH-----HhcCC
Confidence 344777888999999999999999999999999987 66654
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.72 E-value=1.6e-05 Score=70.70 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=24.3
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 68999999999999999999999875
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=1.5e-05 Score=70.93 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=29.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEN 143 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~ 143 (361)
++++++++.+| +.+|+||||+||||++.+|.-++.+
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~~ 45 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALGG 45 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45577788888 9999999999999999999888864
|
|
| >PRK05688 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=1.6e-05 Score=81.23 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=35.0
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.++++ + |.|.+|++++|+|+||+|||||+++|+|+..
T Consensus 156 i~aID~---l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 156 IRSING---L-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred eeeecc---e-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 577555 8 9999999999999999999999999999887
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=2.6e-05 Score=77.22 Aligned_cols=54 Identities=26% Similarity=0.252 Sum_probs=45.7
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCce-------EEEEEccCCCCcchhhhhhhhh
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTT-------SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge-------~vaLvGpnGSGKSTLl~~I~gl 140 (361)
..+.+++++++++|+.. ..+ ++.++|+++.|+ .++|+|..|+|||||+|.|.|-
T Consensus 15 ~~g~~~~~~~~~~~~~~--~~~---~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 15 FKGDTEALAAAVREDAS--TGS---TSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred hCCccccccccccCCCC--ccc---ccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 44568899999999843 246 555999999999 9999999999999999999874
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=97.68 E-value=2.5e-05 Score=68.20 Aligned_cols=23 Identities=17% Similarity=0.586 Sum_probs=21.4
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+||+|||||||++.|.+.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcC
Confidence 46999999999999999999996
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=2.9e-05 Score=70.69 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=35.0
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccc-cceeeeccccc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVG 160 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G~~i 160 (361)
++|.+++|+|+||||||||++.|.+.+. +. .|.+.++|.++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~-----~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH-----ELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-----hCCCCEEEEcCEeH
Confidence 7789999999999999999999999876 33 46788888655
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=3.4e-05 Score=70.58 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=25.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++.+++|.|+||||||||++.|.+.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999999985
|
|
| >cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=97.65 E-value=2.8e-05 Score=74.82 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=27.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
+++|+|+||||||||+++|++++. +..|.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~-----~~~~~vi~ 32 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG-----SDLVTVIC 32 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC-----CCceEEEE
Confidence 589999999999999999999998 76665544
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=3.3e-05 Score=88.93 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=41.4
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
+.+..|++.+| +++|+|+|||||||++++|++++. |..|.+.+++.+
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~-----~~~~~~~f~~~~ 64 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTT 64 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHcccc-----CCCCeEEECCcc
Confidence 55578888886 999999999999999999999998 888999888764
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=4.4e-05 Score=82.46 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=38.9
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc--eeeecccc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSV 159 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G--~I~i~G~~ 159 (361)
+++.++.+++|+++++|||||+||||++..|++.+. ...| .|.+-..|
T Consensus 175 l~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~-----~~~G~kkV~lit~D 224 (767)
T PRK14723 175 LRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV-----AREGADQLALLTTD 224 (767)
T ss_pred ccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH-----HHcCCCeEEEecCc
Confidence 445888888999999999999999999999999886 5555 56554443
|
|
| >PRK08972 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=3.1e-05 Score=78.91 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=34.0
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.+++. + |.|.+|++++|+|+||+|||||+++|++...
T Consensus 150 i~aID~---l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 150 VRAINA---M-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred ceeecc---e-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 456444 7 9999999999999999999999999999877
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=97.56 E-value=3.7e-05 Score=68.37 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=25.2
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
.++. .+++++|+||+|||||+|.|.+-.. ...|.|.-
T Consensus 32 ~l~~-k~~vl~G~SGvGKSSLiN~L~~~~~-----~~t~~is~ 68 (161)
T PF03193_consen 32 LLKG-KTSVLLGQSGVGKSSLINALLPEAK-----QKTGEISE 68 (161)
T ss_dssp HHTT-SEEEEECSTTSSHHHHHHHHHTSS---------S----
T ss_pred HhcC-CEEEEECCCCCCHHHHHHHHHhhcc-----hhhhhhhc
Confidence 3444 8999999999999999999998766 55566653
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=4.5e-05 Score=74.14 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=32.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
+|.+++++|+||+|||||+|+|.|... +..|.|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~-----~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLE-----LKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcC-----CCCcceec
Confidence 588999999999999999999999988 88899986
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=65.51 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|++|+|||||++.|.+-
T Consensus 26 ~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 26 EIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5999999999999999999983
|
|
| >PLN02318 phosphoribulokinase/uridine kinase | Back alignment and domain information |
|---|
Probab=97.52 E-value=5.8e-05 Score=79.29 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=33.2
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
..--+++|.||||||||||++.|+++++ ..|.|.+||..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp------~vgvIsmDdy~ 101 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVISMDNYN 101 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCC------CcEEEEEccee
Confidence 3446999999999999999999999974 57899998753
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.52 E-value=4.5e-05 Score=73.72 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=34.9
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
+...+. +.+++++|+||+|||||+|+|.|... ++.|.|..
T Consensus 155 L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~-----~~~g~v~~ 194 (287)
T cd01854 155 LREYLK-GKTSVLVGQSGVGKSTLINALLPDLD-----LATGEISE 194 (287)
T ss_pred HHhhhc-cceEEEECCCCCCHHHHHHHHhchhh-----ccccceec
Confidence 545666 48999999999999999999999998 88898875
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=97.50 E-value=5e-05 Score=64.20 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEccCCCCcchhhhhhhhhhc
Q 018083 120 LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|+|++|||||||++.|.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~ 24 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF 24 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC
Confidence 68999999999999999998743
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=97.49 E-value=3.9e-05 Score=68.22 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=29.0
Q ss_pred ceEEEEEccCCCCcchhhhhhh---hhhcccccccccceeeec
Q 018083 117 TTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVTYN 156 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~---gl~~~~~~~p~~G~I~i~ 156 (361)
..+++|+||+||||||+++.|+ |+.. ++.|++...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~-----~~~g~~~~~ 40 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTH-----LSTGDLLRA 40 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcE-----EeHHHHHHH
Confidence 4689999999999999999999 6655 777876544
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >PLN03046 D-glycerate 3-kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=6.4e-05 Score=76.11 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=33.4
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
-++||.|++|||||||++.|.++++... ...|.|.+||..+
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g--~~vgvISiDDfYL 253 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTG--RKSATLSIDDFYL 253 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccC--CceEEEEECCccC
Confidence 6899999999999999999999997211 1268888888654
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=3.8e-05 Score=86.43 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=40.0
Q ss_pred hhccCCchhhhhhhhhhhhcc-----------------CCCceeecC----------------CccEEEEEc--Cccccc
Q 018083 255 KSMEGDSDVEKQYNQIVATTF-----------------NCPYLSFRD----------------DKPVVVVTH--GDLLSL 299 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL-----------------DEPt~~L~~----------------g~tvIiiTH--~~~~~~ 299 (361)
.+++.+|||||+++++||+|| |||+.+||+ |+||+|||| ....++
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 578899999999999999986 999999764 899999999 333355
Q ss_pred cchh
Q 018083 300 TDRA 303 (361)
Q Consensus 300 aDri 303 (361)
..+|
T Consensus 1024 ~~qi 1027 (1047)
T PRK10246 1024 PVQI 1027 (1047)
T ss_pred cceE
Confidence 5555
|
|
| >PRK00889 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=8.3e-05 Score=66.01 Aligned_cols=38 Identities=13% Similarity=0.365 Sum_probs=31.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee-ecc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-YNS 157 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~-i~G 157 (361)
++|++++|+|++||||||+.+.|++.+. +..+.+. +++
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~-----~~g~~v~~id~ 40 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR-----EAGYPVEVLDG 40 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEcC
Confidence 5799999999999999999999999997 5555554 554
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=97.47 E-value=4.3e-05 Score=85.99 Aligned_cols=61 Identities=10% Similarity=0.018 Sum_probs=48.8
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GD 295 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~ 295 (361)
.+.|.++......+..||||||++++||++| |||+++||. +.++|+||| ..
T Consensus 1059 ~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~ 1138 (1164)
T TIGR02169 1059 ELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSP 1138 (1164)
T ss_pred EEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHH
Confidence 3444455555678899999999999999887 999999764 678999999 55
Q ss_pred cccccchhhH
Q 018083 296 LLSLTDRARI 305 (361)
Q Consensus 296 ~~~~aDri~v 305 (361)
...+||+++.
T Consensus 1139 ~~~~~d~~~~ 1148 (1164)
T TIGR02169 1139 MIEYADRAIG 1148 (1164)
T ss_pred HHHhcceeEe
Confidence 6689999953
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=97.46 E-value=6.4e-05 Score=78.11 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=45.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+.+++.+..|+.++|+||+|||||||+++|.++++ |.+|.+.+.+..+.
T Consensus 201 ~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp-----~~~~~~~le~~~i~ 250 (499)
T TIGR00368 201 KRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILP-----PLTNEEAIETARIW 250 (499)
T ss_pred HhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccC-----CCCCcEEEeccccc
Confidence 444999999999999999999999999999999999 99999988877653
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >PRK06820 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=7.5e-05 Score=76.28 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=39.8
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 158 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 158 (361)
+.++++ + +++.+|+.++|+|+||+|||||+++|++... ++.+-+-.-|+
T Consensus 151 i~aID~---l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~-----~dv~V~~~iGe 199 (440)
T PRK06820 151 IRAIDG---I-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSA-----ADVMVLALIGE 199 (440)
T ss_pred Cceecc---e-EEecCCCEEEEECCCCCChHHHHHHHhccCC-----CCEEEEEEEcc
Confidence 567555 8 9999999999999999999999999999887 66543333333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 7e-11
Identities = 63/407 (15%), Positives = 133/407 (32%), Gaps = 81/407 (19%)
Query: 16 EEIISPVDDFDIP-LLRNN-SNNNNNNLSMNSGDDEGSRDSWDSLVDQRRR--DAVFREV 71
+ + D D+ + ++ S +++ M+ G+ + +L+ ++ EV
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 72 LQ-SYDQLRTRIGSLTDAKNKILSYTPGAWIENV-----GGMTLSDYDVPK-------TT 118
L+ +Y L + I T+ + + +IE + Y+V +
Sbjct: 87 LRINYKFLMSPIK--TEQRQPSMMTR--MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 119 SLL---------LIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGDGTYFLQE 168
+LL + G GSGK+ + V + K + ++ + + E
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVAL---DVCLSYKVQCKMDFKIFW---LNLKNCNSPE 196
Query: 169 YTIPRGSNSFSLYDTRSLS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSL------R 221
+ D S D S NI + I +R L+ + + L +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQ 254
Query: 222 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK-SMEGDSDV--EKQYNQIVATTFNCP 278
N A + C+ + + V + S++ S + ++ +C
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 279 YLSFRDDKPVVVVTHGDLL------SLTDR-ARIRTY-------LGELLG-----IPPA- 318
D P V+T S+ D A + L ++ + PA
Sbjct: 315 P----QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 319 -KQIFD----IPESSD-PENELIIV--DMLRYCLEHADRNLSCKSCA 357
+++FD P S+ P L ++ D+++ + L S
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 8e-07
Identities = 59/429 (13%), Positives = 123/429 (28%), Gaps = 147/429 (34%)
Query: 16 EEIISPVDD----FDIPLLRNNSNNNNNNLSMNSGDDEGSR---------------DSWD 56
E ++ + D + +++N L ++S E R + +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 57 SLVDQRRRDAVFREVLQSYD-QLR----TRIGSLTDAKNKILSYTPGAWIENVGGMT--- 108
+ + +++ + TR +TD + + T + + +T
Sbjct: 256 A------------KAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDE 302
Query: 109 ----LSDY------DVP---KTTSLLLIGPKGSGKSSLVNRIS--KVFENDKFASERAQV 153
L Y D+P TT+ + + K DK +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT----- 357
Query: 154 TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS---DNIN-----MIKLW----- 200
SS+ N + R + D S + + + +W
Sbjct: 358 IIESSL----------------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 201 -----IMEGVRHGELVIRRSDSS-----SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDG 250
++ + LV ++ S S+ ++ K E ++ R + VD
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN---EYALHRSI------VDH 452
Query: 251 LAVLKSMEGDS---DVEKQY--NQIV-----------ATTFNCPYLSF-------RDDKP 287
+ K+ + D QY + I T F +L F R D
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 288 VVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHA 347
+ L +L ++ Y I D +DP+ E ++ +L + +
Sbjct: 513 AWNASGSILNTLQQ---LKFYK---------PYICD----NDPKYERLVNAILDFLPKIE 556
Query: 348 DRNLSCKSC 356
+ + K
Sbjct: 557 ENLICSKYT 565
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 7e-05
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 18/106 (16%)
Query: 120 LLLIGPKGSGKSSLVNRI--SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNS 177
+L++G G GKSS VN I +V F SE + + R +
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP-------------VMVSRSRAGFT 88
Query: 178 FSLYDTRSLSDDASDN---INMIKLWIMEGVRHGELVIRRSDSSSL 220
++ DT L + N +N+IK ++++ L + R D+ +
Sbjct: 89 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV 134
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 361 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.98 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.95 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.95 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.95 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.95 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.95 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.95 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.94 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.94 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.93 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.92 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.92 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.92 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.91 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.88 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.88 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.87 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.85 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.84 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.82 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.79 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.79 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.78 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.78 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.76 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.76 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.75 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.74 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.74 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.74 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.74 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.72 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.7 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.7 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.7 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.67 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.59 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.55 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.54 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.52 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.51 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.51 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.5 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.49 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.49 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.47 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.47 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.47 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.47 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.44 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.42 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.42 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.41 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.41 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.41 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.41 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.4 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.4 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.39 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.37 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.37 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.36 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.35 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.32 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.32 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.29 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.28 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.27 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.27 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.26 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.25 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.24 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.18 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.17 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.16 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.16 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.16 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.15 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.14 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.09 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.08 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.06 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.05 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.01 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.0 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.99 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 98.99 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.97 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.94 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.93 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.91 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.91 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.91 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.9 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.89 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 98.87 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.85 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.72 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.7 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.7 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 98.68 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.6 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.59 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.55 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.52 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.51 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.48 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.43 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.41 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.4 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 98.38 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.37 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.35 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.34 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.34 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.33 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.33 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.31 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.27 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.26 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.23 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.22 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.22 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.21 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.2 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.14 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.12 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.08 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.08 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.08 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.06 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.04 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.03 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.02 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.02 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.98 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.96 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 97.95 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.95 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.92 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.89 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.87 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.85 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.82 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.82 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.81 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.81 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.81 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.75 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.74 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.74 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.69 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.65 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.64 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.6 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.55 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.52 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.48 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.44 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.41 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.4 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.4 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.37 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.29 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.28 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.26 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.21 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.2 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.19 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.18 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.16 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.16 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.14 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.14 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.14 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.14 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.12 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.12 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.06 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.05 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 97.02 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.97 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.96 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.94 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.93 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.92 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.84 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.83 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.8 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.8 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.8 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 96.8 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.77 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.75 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.73 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.72 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.7 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.68 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.67 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.67 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.66 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.66 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.65 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 96.62 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.61 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.6 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.6 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.58 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.58 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.57 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.52 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.5 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.5 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 96.49 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.49 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.48 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.47 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.47 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.46 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.46 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.45 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.42 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.41 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.41 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.39 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.37 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.34 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.33 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.32 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.3 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.29 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.29 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.29 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.29 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.27 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.26 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.25 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.23 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.23 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.22 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.21 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.21 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.21 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.2 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.2 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.19 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.19 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.19 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.17 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.17 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 96.17 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.17 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.16 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.16 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.16 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.16 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.15 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.15 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 96.14 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.13 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.13 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.13 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.12 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.09 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.08 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.08 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.08 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.08 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.08 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.07 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.06 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.06 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.06 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.06 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 96.05 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.04 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.03 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 96.03 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.01 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.01 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.0 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 96.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.98 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.97 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 95.97 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.97 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.96 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.94 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.93 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.92 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.92 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.92 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.91 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.9 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.9 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.88 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.87 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.87 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.84 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.84 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.83 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.82 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 95.82 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.81 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.81 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 95.79 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.79 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.79 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.79 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.78 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.77 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.77 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.76 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.76 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 95.76 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.76 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 95.74 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.74 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.73 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.73 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.72 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 95.71 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.7 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.7 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.68 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.67 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.67 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.65 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.63 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.63 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.62 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.62 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.62 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.62 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.62 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.62 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.62 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.62 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.62 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.61 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.61 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.61 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.6 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.59 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.59 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.58 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.58 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.58 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.58 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.56 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.55 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.55 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.54 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.54 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.54 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.53 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.51 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.5 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.48 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.48 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 95.47 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.46 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 95.46 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 95.46 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.45 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.41 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.41 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.4 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.39 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.37 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.37 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.36 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.36 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.33 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.32 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.31 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.31 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.29 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.27 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.25 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.25 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.24 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.22 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.2 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.19 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.18 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.17 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.17 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.16 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.15 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.13 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.13 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.1 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 95.1 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.04 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.02 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.01 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.0 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 94.98 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 94.94 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.88 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 94.82 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 94.73 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 94.62 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 94.62 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.58 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.57 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.56 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.58 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.54 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 94.49 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 94.47 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 94.42 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.36 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.35 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 94.34 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 94.34 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.28 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 94.23 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 94.19 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.15 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.15 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 94.14 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.13 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 94.07 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.04 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 94.02 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.02 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 94.0 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 93.99 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 93.98 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 93.95 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 93.94 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 93.91 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 93.91 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 93.82 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 93.74 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 93.69 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 93.61 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 93.58 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 93.57 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 93.54 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 93.51 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 93.49 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 93.44 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 93.38 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 93.37 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 93.34 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 93.28 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 93.23 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 93.2 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 93.2 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 93.18 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-46 Score=366.01 Aligned_cols=218 Identities=13% Similarity=0.148 Sum_probs=178.3
Q ss_pred HhhhccccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc
Q 018083 79 RTRIGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 157 (361)
Q Consensus 79 ~~~~~~~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 157 (361)
.+..+++|+++||+++|+.+. ..++ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|
T Consensus 18 ~~~~~~mi~v~~ls~~y~~~~~~~~a---L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-----p~~G~I~i~G 89 (366)
T 3tui_C 18 DDDDKHMIKLSNITKVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDG 89 (366)
T ss_dssp -----CCEEEEEEEEEEECSSSEEEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETT
T ss_pred CCCCCceEEEEeEEEEeCCCCCCeEE---EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-----CCceEEEECC
Confidence 344667999999999997432 2457 556999999999999999999999999999999999 9999999999
Q ss_pred cccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcc
Q 018083 158 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 158 ~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
+++.... ...+...+..++||||++.+++. ++.+|+.++.... ..++.+.++++.++++.+||.+
T Consensus 90 ~~i~~~~------------~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~-~~~~~~~~~~v~~lL~~vgL~~- 155 (366)
T 3tui_C 90 QELTTLS------------ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEVKRRVTELLSLVGLGD- 155 (366)
T ss_dssp EECSSCC------------HHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTCGG-
T ss_pred EECCcCC------------HHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch-
Confidence 9885100 01122345679999999988877 9999999876432 2344566788999999999988
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 290 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIi 290 (361)
+++++|.+||||||||++||||| ||||++||+ |+|||+
T Consensus 156 ----------------~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~ 219 (366)
T 3tui_C 156 ----------------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219 (366)
T ss_dssp ----------------GTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred ----------------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 46999999999999999999999 999999753 899999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
||| +.+..+||||+ +|++|++++.|++++++..|.+++++.++.
T Consensus 220 vTHdl~~~~~~aDrv~-vl~~G~iv~~g~~~ev~~~p~~~~~~~~~~ 265 (366)
T 3tui_C 220 ITHEMDVVKRICDCVA-VISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265 (366)
T ss_dssp EESCHHHHHHHCSEEE-EEETTEEEECCBHHHHHSSCCSHHHHHHHH
T ss_pred EecCHHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCcHHHHHHHh
Confidence 999 56778999996 599999999999999999988766655544
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=359.96 Aligned_cols=204 Identities=13% Similarity=0.178 Sum_probs=173.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++||+++|++. ++ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~i~~ls~~y~~~---~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~i~~~ 71 (359)
T 3fvq_A 3 AALHIGHLSKSFQNT---PV---LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-----PDSGEISLSGKTIFSK 71 (359)
T ss_dssp CCEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEESS
T ss_pred cEEEEEeEEEEECCE---EE---EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 379999999999753 56 666999999999999999999999999999999999 9999999999887310
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.......++.++||||++.+|+. ++.+|+.+++... ...+.+.++++.++++.++|.+
T Consensus 72 -------------~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~------- 130 (359)
T 3fvq_A 72 -------------NTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG-KGRTAQERQRIEAMLELTGISE------- 130 (359)
T ss_dssp -------------SCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS-SCCSHHHHHHHHHHHHHHTCGG-------
T ss_pred -------------ccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCCch-------
Confidence 01122335679999999999887 9999999987532 2345666788999999999988
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| +
T Consensus 131 ----------~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 131 ----------LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200 (359)
T ss_dssp ----------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56999999999999999999999 999999763 899999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
++..+||||+ +|++|++++.|++++++..|...++
T Consensus 201 ea~~~aDri~-vl~~G~i~~~g~~~el~~~p~~~~~ 235 (359)
T 3fvq_A 201 EALQYADRIA-VMKQGRILQTASPHELYRQPADLDA 235 (359)
T ss_dssp HHHHHCSEEE-EEETTEEEEEECHHHHHHSCSCHHH
T ss_pred HHHHHCCEEE-EEECCEEEEEeCHHHHHhCcccHHH
Confidence 7889999996 5999999999999999988865443
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-45 Score=363.50 Aligned_cols=204 Identities=12% Similarity=0.161 Sum_probs=175.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++||+++|++ .++ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~yg~---~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~~~~- 69 (381)
T 3rlf_A 2 ASVQLQNVTKAWGE---VVV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMND- 69 (381)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred CEEEEEeEEEEECC---EEE---EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-----CCCeEEEECCEECCC-
Confidence 46999999999975 356 666999999999999999999999999999999999 999999999998751
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. ..++.++||||++.+++. ++.+||.++.... ..++.+.++++.++++.++|.+
T Consensus 70 --------------~~--~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------- 125 (381)
T 3rlf_A 70 --------------TP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAH------- 125 (381)
T ss_dssp --------------CC--GGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT-TCCHHHHHHHHHHHHHHTTCGG-------
T ss_pred --------------CC--HHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 11 123458999999999988 9999999986532 2344566788999999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| +
T Consensus 126 ----------~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 126 ----------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (381)
T ss_dssp ----------GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred ----------hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 56999999999999999999999 999999763 899999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
++..+||||+ +|++|++++.|++++++..|.+.+++.++
T Consensus 196 ea~~~aDri~-vl~~G~i~~~g~~~~l~~~p~~~~v~~~~ 234 (381)
T 3rlf_A 196 EAMTLADKIV-VLDAGRVAQVGKPLELYHYPADRFVAGFI 234 (381)
T ss_dssp HHHHHCSEEE-EEETTEEEEEECHHHHHHCCSBHHHHHHS
T ss_pred HHHHhCCEEE-EEECCEEEEEeCHHHHHhCCccHHHHHhc
Confidence 7889999996 59999999999999999988766554444
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=340.47 Aligned_cols=201 Identities=12% Similarity=0.202 Sum_probs=166.2
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++||+++|+++. .+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 5 ~~~l~i~~ls~~y~~~~--~~---L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G~I~~~G~~i~~ 74 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGT--HA---LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-----PSSGRILFDNKPIDY 74 (275)
T ss_dssp CEEEEEEEEEEECTTSC--EE---EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCC
T ss_pred CcEEEEEEEEEEECCCC--eE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeEEEECCEECCc
Confidence 35799999999997543 35 666999999999999999999999999999999999 999999999988730
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. .......+..+++|||++. ++..++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 75 ~-------------~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~----- 135 (275)
T 3gfo_A 75 S-------------RKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM-KLPEDEIRKRVDNALKRTGIEH----- 135 (275)
T ss_dssp S-------------HHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHTTCGG-----
T ss_pred c-------------cccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 0 1112234567899999873 44448999998875421 2334556778899999999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| ||||++||+ |+|||+|||
T Consensus 136 ------------~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 203 (275)
T 3gfo_A 136 ------------LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203 (275)
T ss_dssp ------------GTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred ------------hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecC
Confidence 56999999999999999999999 999999753 889999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+..+|||++ +|++|++++.|++++++..+
T Consensus 204 l~~~~~~~drv~-~l~~G~i~~~g~~~~~~~~~ 235 (275)
T 3gfo_A 204 IDIVPLYCDNVF-VMKEGRVILQGNPKEVFAEK 235 (275)
T ss_dssp CSSGGGGCSEEE-EEETTEEEEEECHHHHTHHH
T ss_pred HHHHHHhCCEEE-EEECCEEEEECCHHHHhcCH
Confidence 57778999996 59999999999999988753
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=350.08 Aligned_cols=204 Identities=15% Similarity=0.168 Sum_probs=166.4
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
|.+|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 M~~l~~~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~ 77 (372)
T 1v43_A 9 MVEVKLENLTKRFGNF---TA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTY 77 (372)
T ss_dssp CCCEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred eeeEEEEEEEEEECCE---EE---EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCC
Confidence 4469999999999752 46 666999999999999999999999999999999999 999999999988751
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. ..++.++||||++.+|+. ++.+|+.+++... ..++.+.++++.++++.++|.+
T Consensus 78 ---------------~~--~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------ 133 (372)
T 1v43_A 78 ---------------LP--PKDRNISMVFQSYAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEE------ 133 (372)
T ss_dssp ---------------SC--GGGGTEEEEEC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGG------
T ss_pred ---------------CC--hhhCcEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh------
Confidence 11 123468999999999988 9999999986532 2233455678899999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
+++++|.+||||||||++||||| |||+++||. |+|+|+|||
T Consensus 134 -----------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 134 -----------LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp -----------GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 56999999999999999999999 999999763 899999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
+++..+|||++ +|++|++++.|++++++..|...++..+
T Consensus 203 ~~a~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~a~~ 241 (372)
T 1v43_A 203 VEAMTMGDRIA-VMNRGQLLQIGSPTEVYLRPNSVFVATF 241 (372)
T ss_dssp HHHHHHCSEEE-EEETTEEEEEECHHHHHHCCSBHHHHHH
T ss_pred HHHHHhCCEEE-EEECCEEEEeCCHHHHHhCcccHHHHHH
Confidence 57789999996 5999999999999999988765444333
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-44 Score=351.15 Aligned_cols=203 Identities=14% Similarity=0.204 Sum_probs=171.0
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++|++++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 2 ~~l~~~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~-- 68 (362)
T 2it1_A 2 VEIKLENIVKKFGNF---TA---LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-----PTSGKIYFDEKDVT-- 68 (362)
T ss_dssp CCEEEEEEEEESSSS---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECT--
T ss_pred cEEEEEeEEEEECCE---EE---EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCceEEEECCEECC--
Confidence 368999999999653 45 666999999999999999999999999999999999 99999999998875
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
... ..++.++||||++.+|+. ++.+|+.+++... ..++.+.++++.++++.++|.+
T Consensus 69 -------------~~~--~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------- 125 (362)
T 2it1_A 69 -------------ELP--PKDRNVGLVFQNWALYPHMTVYKNIAFPLELR-KAPREEIDKKVREVAKMLHIDK------- 125 (362)
T ss_dssp -------------TSC--GGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTT-------
T ss_pred -------------cCC--HhHCcEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 111 123568999999988887 9999999876421 2233455678899999999988
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| +
T Consensus 126 ----------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 126 ----------LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA 195 (362)
T ss_dssp ----------CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred ----------HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 56999999999999999999999 999999763 899999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
++..+||||+ +|++|++++.|++++++..|...++..+
T Consensus 196 ~a~~~adri~-vl~~G~i~~~g~~~~~~~~p~~~~~~~~ 233 (362)
T 2it1_A 196 EALAMADRIA-VIREGEILQVGTPDEVYYKPKYKFVGGF 233 (362)
T ss_dssp HHHHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHHHHH
T ss_pred HHHHhCCEEE-EEECCEEEEEcCHHHHHhCccchHHHHH
Confidence 7789999996 5999999999999999988765443333
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-44 Score=350.51 Aligned_cols=203 Identities=13% Similarity=0.187 Sum_probs=170.8
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++|++++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~- 69 (359)
T 2yyz_A 2 PSIRVVNLKKYFGKV---KA---VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-----PTSGEIYFDDVLVND- 69 (359)
T ss_dssp CCEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred cEEEEEEEEEEECCE---EE---EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-----CCccEEEECCEECCC-
Confidence 368999999999752 46 666999999999999999999999999999999999 999999999988751
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. ..++.++||||++.+|+. ++.+|+.++.... ..++.+.++++.++++.++|.+
T Consensus 70 --------------~~--~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------- 125 (359)
T 2yyz_A 70 --------------IP--PKYREVGMVFQNYALYPHMTVFENIAFPLRAR-RISKDEVEKRVVEIARKLLIDN------- 125 (359)
T ss_dssp --------------SC--GGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS-CSHHHHTTHHHHHHHHHTTCGG-------
T ss_pred --------------CC--hhhCcEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 11 123568999999988887 9999999976421 1222344677889999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| +
T Consensus 126 ----------~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 126 ----------LLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195 (359)
T ss_dssp ----------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 56999999999999999999999 999999763 899999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
++..+|||++ +|++|++++.|++++++..|...+++.+
T Consensus 196 ~~~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~~~~ 233 (359)
T 2yyz_A 196 EAMTMASRIA-VFNQGKLVQYGTPDEVYDSPKNMFVASF 233 (359)
T ss_dssp HHHHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHHHHH
T ss_pred HHHHhCCEEE-EEECCEEEEeCCHHHHHhCcccHHHHHH
Confidence 7788999996 5999999999999999988865444333
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-44 Score=350.22 Aligned_cols=208 Identities=14% Similarity=0.225 Sum_probs=172.0
Q ss_pred cccccccceeeecCcceee--ccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 84 SLTDAKNKILSYTPGAWIE--NVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~--~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+|+++||+++|++. + + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 2 ~~l~i~~l~~~y~~~---~~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~ 70 (353)
T 1oxx_K 2 VRIIVKNVSKVFKKG---KVVA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVA 70 (353)
T ss_dssp CCEEEEEEEEEEGGG---TEEE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEE
T ss_pred cEEEEEeEEEEECCE---eeee---EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECc
Confidence 468999999999753 3 6 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
... .......++.++||||++.+|+. ++.+|+.++.... ..++++.++++.++++.++|.+
T Consensus 71 ~~~------------~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~----- 132 (353)
T 1oxx_K 71 SNG------------KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM-KMSKEEIRKRVEEVAKILDIHH----- 132 (353)
T ss_dssp ETT------------EESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS-SCCHHHHHHHHHHHHHHTTCGG-----
T ss_pred ccc------------cccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 100 00112234668999999988887 9999999976421 2233455678899999999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+|||
T Consensus 133 ------------~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 200 (353)
T 1oxx_K 133 ------------VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200 (353)
T ss_dssp ------------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 56999999999999999999999 999999764 899999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
+++..+|||++ +|++|++++.|++++++..|...+++.+
T Consensus 201 ~~~~~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~~~~ 240 (353)
T 1oxx_K 201 PADIFAIADRVG-VLVKGKLVQVGKPEDLYDNPVSIQVASL 240 (353)
T ss_dssp HHHHHHHCSEEE-EEETTEEEEEECHHHHHHSCSSHHHHHH
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCcccHHHHHh
Confidence 57789999996 5999999999999999988765444333
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=348.99 Aligned_cols=206 Identities=14% Similarity=0.165 Sum_probs=173.0
Q ss_pred hccccccccceeee-cCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 82 IGSLTDAKNKILSY-TPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 82 ~~~~lei~nl~~~Y-~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
..++|+++||+++| ++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 11 ~~~~l~~~~l~~~y~g~~---~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i 79 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGA---RS---VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-----PTKGDVWIGGKRV 79 (355)
T ss_dssp CCEEEEEEEEEECCTTST---TC---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEC
T ss_pred CCceEEEEEEEEEEcCCC---EE---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEEC
Confidence 34579999999999 543 45 666999999999999999999999999999999999 9999999999887
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
.. . ...++.++||||++.+|+. ++.+|+.+++... ..++.+.++++.++++.++|.+
T Consensus 80 ~~---------------~--~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~---- 137 (355)
T 1z47_A 80 TD---------------L--PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK-RVPKDEMDARVRELLRFMRLES---- 137 (355)
T ss_dssp TT---------------C--CGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCGG----
T ss_pred Cc---------------C--ChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh----
Confidence 51 1 1234568999999998887 9999999876421 2233455678899999999987
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH 293 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+|||
T Consensus 138 -------------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH 204 (355)
T 1z47_A 138 -------------YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204 (355)
T ss_dssp -------------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECS
T ss_pred -------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 56999999999999999999999 999999763 899999999
Q ss_pred --CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
+++..+|||++ +|++|++++.|++++++..|...+++.++
T Consensus 205 d~~~a~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~~~~~ 246 (355)
T 1z47_A 205 DQEEALEVADRVL-VLHEGNVEQFGTPEEVYEKPGTLFVASFI 246 (355)
T ss_dssp CHHHHHHHCSEEE-EEETTEEEEEECHHHHHHSCSSHHHHHHT
T ss_pred CHHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCccchHHHHhc
Confidence 57789999996 59999999999999999887654443333
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=350.18 Aligned_cols=206 Identities=13% Similarity=0.171 Sum_probs=170.0
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 2 ~~l~~~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~ 70 (372)
T 1g29_1 2 AGVRLVDVWKVFGEV---TA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVADP 70 (372)
T ss_dssp EEEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEEG
T ss_pred CEEEEEeEEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-----CCccEEEECCEECccc
Confidence 368999999999652 46 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. .......++.++||||++.+|+. ++.+|+.+++... ..++.+.++++.++++.++|.+
T Consensus 71 ----~~-------~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------- 131 (372)
T 1g29_1 71 ----EK-------GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTE------- 131 (372)
T ss_dssp ----GG-------TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGG-------
T ss_pred ----cc-------cccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCch-------
Confidence 00 00011224568999999988887 9999999876421 2233455678889999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| +
T Consensus 132 ----------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 201 (372)
T 1g29_1 132 ----------LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (372)
T ss_dssp ----------GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred ----------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 56999999999999999999999 999999763 899999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
++..+|||++ +|++|++++.|++++++..|...++
T Consensus 202 ~a~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~ 236 (372)
T 1g29_1 202 EAMTMGDRIA-VMNRGVLQQVGSPDEVYDKPANTFV 236 (372)
T ss_dssp HHHHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHHHhCCEEE-EEeCCEEEEeCCHHHHHhCcccHHH
Confidence 7788999996 5999999999999999988765443
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=340.23 Aligned_cols=221 Identities=13% Similarity=0.177 Sum_probs=169.4
Q ss_pred hhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhh
Q 018083 64 RDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 135 (361)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~ 135 (361)
...|+.++++..++.... ..+.|+++||+|+|+++. ++ |++|||+|++|++++|+||||||||||++
T Consensus 24 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~--~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 24 DMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGR--ET---LQDVSFTVMPGQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp CHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTC--EE---EEEEEEEECTTCEEEEESSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCC--ce---eeeeeEEEcCCCEEEEECCCCchHHHHHH
Confidence 355999999877654221 123599999999997543 45 66699999999999999999999999999
Q ss_pred hhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecC
Q 018083 136 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 215 (361)
Q Consensus 136 ~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~ 215 (361)
+|+|+++ |++|+|.++|+++. .+.....+..++||+|++.+|..+|.+||.++...
T Consensus 99 ll~gl~~-----p~~G~I~i~G~~i~---------------~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~---- 154 (306)
T 3nh6_A 99 LLFRFYD-----ISSGCIRIDGQDIS---------------QVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT---- 154 (306)
T ss_dssp HHTTSSC-----CSEEEEEETTEETT---------------SBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTT----
T ss_pred HHHcCCC-----CCCcEEEECCEEcc---------------cCCHHHHhcceEEEecCCccCcccHHHHHHhhccc----
Confidence 9999999 99999999999986 34445567789999999998877999999987531
Q ss_pred CChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--
Q 018083 216 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 284 (361)
Q Consensus 216 ~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-- 284 (361)
...+++.++++.+++.+.+...++.+ .....+.+.+||||||||++||||| ||||++||.
T Consensus 155 ---~~~~~~~~~~~~~~l~~~i~~lp~gl------~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~ 225 (306)
T 3nh6_A 155 ---AGNDEVEAAAQAAGIHDAIMAFPEGY------RTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN 225 (306)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHSTTGG------GCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHH
T ss_pred ---CCHHHHHHHHHHhCcHHHHHhccchh------hhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 11234555566665544210000000 0022456679999999999999999 999999763
Q ss_pred -------------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 -------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 -------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ..+. .||||+ +|++|+|++.|++++++..
T Consensus 226 ~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~aD~i~-vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 226 ERAIQASLAKVCANRTTIVVAHRLSTVV-NADQIL-VIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHHHHHHHHHHTTSEEEEECCSHHHHH-TCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEcChHHHH-cCCEEE-EEECCEEEEECCHHHHHhc
Confidence 899999999 3444 499996 6999999999999998764
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=326.34 Aligned_cols=197 Identities=19% Similarity=0.196 Sum_probs=157.6
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+|+++||+++|+.+. ..++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~---L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~- 71 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYA---LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTND- 71 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT-
T ss_pred CEEEEEEEEEeCCCCcceee---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEEccc-
Confidence 478999999997432 1346 666999999999999999999999999999999999 999999999988751
Q ss_pred eEeEeeeecCCCcceeee---ec-CCCCcccccchHHHHH-HHHhccccceeEE--ecCCChhhhhhhcccccccCCCcc
Q 018083 164 YFLQEYTIPRGSNSFSLY---DT-RSLSDDASDNINMIKL-WIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~---d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~--~~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
+... .. +..++||||++.+++. ++.+|+.++.... ......+..+++.++++.+++.+.
T Consensus 72 --------------~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 137 (235)
T 3tif_A 72 --------------LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137 (235)
T ss_dssp --------------CCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG
T ss_pred --------------CCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh
Confidence 1111 11 2358899999988877 9999998764321 112234556778889999999762
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 290 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIi 290 (361)
.+++++.+||||||||++||||| ||||++||. |+|||+
T Consensus 138 ----------------~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~ 201 (235)
T 3tif_A 138 ----------------FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV 201 (235)
T ss_dssp ----------------GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred ----------------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 24889999999999999999999 999999753 899999
Q ss_pred EEcC-ccccccchhhHhhhhhhhcCCCCcccc
Q 018083 291 VTHG-DLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 291 iTH~-~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
|||+ .+..+|||++ +|++|++++.++++++
T Consensus 202 vtHd~~~~~~~d~i~-~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 202 VTHDINVARFGERII-YLKDGEVEREEKLRGF 232 (235)
T ss_dssp ECSCHHHHTTSSEEE-EEETTEEEEEEECC--
T ss_pred EcCCHHHHHhCCEEE-EEECCEEEEEcChhhh
Confidence 9992 3558999996 5999999998887665
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=345.55 Aligned_cols=200 Identities=14% Similarity=0.182 Sum_probs=169.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
||+++|++++|++. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~~----~---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~-- 66 (348)
T 3d31_A 1 MIEIESLSRKWKNF----S---LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTD-- 66 (348)
T ss_dssp CEEEEEEEEECSSC----E---EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEECCE----E---EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCEECCC--
Confidence 47899999999652 4 777999999999999999999999999999999999 999999999988751
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
....++.++||||++.+|+. ++.+|+.++.... ..++. +++.++++.++|.+
T Consensus 67 ---------------~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~-~~~~~---~~v~~~l~~~~L~~-------- 119 (348)
T 3d31_A 67 ---------------LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK-KIKDP---KRVLDTARDLKIEH-------- 119 (348)
T ss_dssp ---------------SCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH-CCCCH---HHHHHHHHHTTCTT--------
T ss_pred ---------------CchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc-CCCHH---HHHHHHHHHcCCch--------
Confidence 11224568999999988887 9999999876421 11222 67888999999988
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| ++
T Consensus 120 ---------~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~ 190 (348)
T 3d31_A 120 ---------LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190 (348)
T ss_dssp ---------TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 56999999999999999999999 999999753 899999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+..+|||++ +|++|++++.|++++++..|...+++.++.
T Consensus 191 ~~~~adri~-vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 229 (348)
T 3d31_A 191 ARIMADRIA-VVMDGKLIQVGKPEEIFEKPVEGRVASFVG 229 (348)
T ss_dssp HHHHCSEEE-EESSSCEEEEECHHHHHSSCCTTHHHHHHC
T ss_pred HHHhCCEEE-EEECCEEEEECCHHHHHhCcccHHHHHhcC
Confidence 789999996 599999999999999999887665544443
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=334.56 Aligned_cols=202 Identities=15% Similarity=0.202 Sum_probs=163.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 23 ~~l~i~~l~~~y~~~---~v---L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~~- 90 (263)
T 2olj_A 23 QMIDVHQLKKSFGSL---EV---LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-----FDEGEIIIDGINLKA- 90 (263)
T ss_dssp CSEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEESSS-
T ss_pred heEEEEeEEEEECCE---EE---EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEECCC-
Confidence 479999999999652 45 666999999999999999999999999999999999 999999999987630
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. .......+..++||+|++.+++. ++.+|+.++............++++.++++.+++.+
T Consensus 91 ~------------~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~------- 151 (263)
T 2olj_A 91 K------------DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD------- 151 (263)
T ss_dssp T------------TCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-------
T ss_pred c------------cccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-------
Confidence 0 01111223457889998877776 899999875311111222344567888999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
++++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 152 ----------~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 221 (263)
T 2olj_A 152 ----------KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF 221 (263)
T ss_dssp ----------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 45899999999999999999999 999999753 899999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
+..+||+++ +|++|++++.|++++++..+..
T Consensus 222 ~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~ 252 (263)
T 2olj_A 222 AREVGDRVL-FMDGGYIIEEGKPEDLFDRPQH 252 (263)
T ss_dssp HHHHCSEEE-EEETTEEEEEECHHHHHHSCCS
T ss_pred HHHhCCEEE-EEECCEEEEECCHHHHHhCccc
Confidence 778999996 5999999999999988876543
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=325.52 Aligned_cols=194 Identities=13% Similarity=0.148 Sum_probs=160.5
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (257)
T 1g6h_A 5 MEILRTENIVKYFGEF---KA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITN 73 (257)
T ss_dssp CEEEEEEEEEEEETTE---EE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CcEEEEeeeEEEECCE---ee---EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 4579999999999753 46 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceee-eecCCCCcccccchHHHHH-HHHhccccceeE-Eec-----------CCChhhhhhhcccc
Q 018083 163 TYFLQEYTIPRGSNSFSL-YDTRSLSDDASDNINMIKL-WIMEGVRHGELV-IRR-----------SDSSSLRNRMRCKA 228 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~-~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~-~~~-----------~~~~~~~~~v~~~l 228 (361)
... ...+..+++|+|++.+++. ++.+|+.++... ... ......++++.+++
T Consensus 74 ---------------~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 138 (257)
T 1g6h_A 74 ---------------KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138 (257)
T ss_dssp ---------------CCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHH
T ss_pred ---------------CCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHH
Confidence 110 1123458899999888776 999999886432 001 12344556788899
Q ss_pred cccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------
Q 018083 229 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------------- 284 (361)
Q Consensus 229 ~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--------------- 284 (361)
+.+++.+ ++++++.+||||||||++||||| ||||++||.
T Consensus 139 ~~~~l~~-----------------~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 201 (257)
T 1g6h_A 139 EFLKLSH-----------------LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201 (257)
T ss_dssp HHTTCGG-----------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCch-----------------hhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 9999987 45899999999999999999999 999999753
Q ss_pred -CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccc
Q 018083 285 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 320 (361)
Q Consensus 285 -g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~ 320 (361)
|+|||++|| +.+..+|||++ +|++|+++..|++++
T Consensus 202 ~g~tvi~vtHd~~~~~~~~d~v~-~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 202 KGITFLIIEHRLDIVLNYIDHLY-VMFNGQIIAEGRGEE 239 (257)
T ss_dssp TTCEEEEECSCCSTTGGGCSEEE-EEETTEEEEEEESHH
T ss_pred CCCEEEEEecCHHHHHHhCCEEE-EEECCEEEEEeCHHH
Confidence 899999999 56778999996 599999999888887
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-42 Score=319.68 Aligned_cols=199 Identities=17% Similarity=0.211 Sum_probs=164.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++ + |+++||+|++ ++++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~---~-----l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 64 (240)
T 2onk_A 1 MFLKVRAEKRLGN---F-----RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADITP-- 64 (240)
T ss_dssp CCEEEEEEEEETT---E-----EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEeCC---E-----EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc--
Confidence 4789999999964 3 6779999999 9999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
....+..++|++|++.+++. ++.+|+.++.... .....++++.++++.+++.+
T Consensus 65 ---------------~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~l~~~~l~~-------- 118 (240)
T 2onk_A 65 ---------------LPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV---ERVERDRRVREMAEKLGIAH-------- 118 (240)
T ss_dssp ---------------SCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS---CHHHHHHHHHHHHHTTTCTT--------
T ss_pred ---------------CchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc---CCchHHHHHHHHHHHcCCHH--------
Confidence 11234568999999888776 8999998865311 11122567888999999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
++++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 119 ---------~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~ 189 (240)
T 2onk_A 119 ---------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189 (240)
T ss_dssp ---------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 45899999999999999999999 999999753 899999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhh
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 336 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~ 336 (361)
+..+||+++ +|++|+++..|++++++..+ ..++..++..
T Consensus 190 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~-~~~~~~~~~~ 228 (240)
T 2onk_A 190 AAMLADEVA-VMLNGRIVEKGKLKELFSAK-NGEVAEFLSA 228 (240)
T ss_dssp HHHHCSEEE-EEETTEEEEEECHHHHHHSC-CSSHHHHGGG
T ss_pred HHHhCCEEE-EEECCEEEEECCHHHHHhCc-hHHHHHHhcC
Confidence 778999996 59999999999999998876 5554444433
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=332.76 Aligned_cols=211 Identities=17% Similarity=0.122 Sum_probs=163.9
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++||+++|+.. ++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 5 ~~l~i~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~~ 73 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGH---EV---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLV 73 (262)
T ss_dssp CCEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEE
T ss_pred ceEEEeeEEEEECCE---EE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcccc
Confidence 479999999999752 45 666999999999999999999999999999999999 9999999999876400
Q ss_pred eEeEe--eeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 164 YFLQE--YTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 164 ~~~~~--~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
..... .... .......+..+++|||++.+++. ++.+|+.++.......+....++++.++++.+++.+
T Consensus 74 ~~~~~~~~~~~----~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----- 144 (262)
T 1b0u_A 74 RDKDGQLKVAD----KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDE----- 144 (262)
T ss_dssp ECTTSSEEESC----HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCH-----
T ss_pred ccccccccccC----hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCc-----
Confidence 00000 0000 00011223457889999877776 899999875311111222344567888999999987
Q ss_pred EEEEEEEEechhh-hhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAV-LKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~-~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH- 293 (361)
+ +++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 145 ------------~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 212 (262)
T 1b0u_A 145 ------------RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212 (262)
T ss_dssp ------------HHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC
T ss_pred ------------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5 6899999999999999999999 999999753 899999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
+.+..+|||++ +|++|++++.|++++++..+..
T Consensus 213 ~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~ 246 (262)
T 1b0u_A 213 MGFARHVSSHVI-FLHQGKIEEEGDPEQVFGNPQS 246 (262)
T ss_dssp HHHHHHHCSEEE-EEETTEEEEEECHHHHHHSCCS
T ss_pred HHHHHHhCCEEE-EEECCEEEEeCCHHHHHhCcch
Confidence 46778999996 5999999999999999876644
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=325.55 Aligned_cols=195 Identities=13% Similarity=0.111 Sum_probs=161.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|++. ++ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~~~---~v---L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQ---AL---INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-----PSHGECHLLGQNLNS 77 (266)
T ss_dssp CCEEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-----CSSCEEEETTEETTT
T ss_pred cceEEEEeEEEEeCCe---eE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence 3579999999999763 56 666999999999999999999999999999999999 999999999998751
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
......+..+++++|++.+++. ++.+|+.++... ......++++.++++.+++.+
T Consensus 78 ---------------~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~---~~~~~~~~~~~~~l~~~~l~~------ 133 (266)
T 4g1u_C 78 ---------------WQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAP---YGGSQDRQALQQVMAQTDCLA------ 133 (266)
T ss_dssp ---------------SCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTT---SCSTTHHHHHHHHHHHTTCST------
T ss_pred ---------------CCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhh---cCcHHHHHHHHHHHHHcCChh------
Confidence 1222233446788888766444 889999886542 123455677888999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------------CCCceeecC-----------------CccEE
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD-----------------DKPVV 289 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------------DEPt~~L~~-----------------g~tvI 289 (361)
++++++.+||||||||++||||| ||||++||. ++|||
T Consensus 134 -----------~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi 202 (266)
T 4g1u_C 134 -----------LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVC 202 (266)
T ss_dssp -----------TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEE
T ss_pred -----------HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 45899999999999999999997 999999763 57999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+||| +.+..+|||++ +|++|++++.|++++++..
T Consensus 203 ~vtHdl~~~~~~~d~v~-vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 203 CVLHDLNLAALYADRIM-LLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp EECSCHHHHHHHCSEEE-EEETTEEEEEECHHHHCCH
T ss_pred EEEcCHHHHHHhCCEEE-EEECCEEEEEcCHHHHhCc
Confidence 9999 56778999996 5999999999999888653
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-42 Score=319.67 Aligned_cols=195 Identities=14% Similarity=0.198 Sum_probs=159.4
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAI---HA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp SEEEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CceEEEEeEEEEECCe---eE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence 3579999999999752 45 666999999999999999999999999999999999 999999999988741
Q ss_pred ceEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccC-CCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~g-l~~~~~~ 239 (361)
..... .+..++|++|++.+++. ++.+|+.++... .......++.+.++++.++ +.+
T Consensus 73 ---------------~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~--~~~~~~~~~~~~~~l~~~~~l~~---- 131 (240)
T 1ji0_A 73 ---------------KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN--RKDKEGIKRDLEWIFSLFPRLKE---- 131 (240)
T ss_dssp ---------------CCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTT--CCCSSHHHHHHHHHHHHCHHHHT----
T ss_pred ---------------CCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhc--CCCHHHHHHHHHHHHHHcccHhh----
Confidence 11111 13458899999887777 999999886421 1123344566778888884 876
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH- 293 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 132 -------------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd 198 (240)
T 1ji0_A 132 -------------RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198 (240)
T ss_dssp -------------TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred -------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 45899999999999999999999 999999753 899999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+.+..+|||++ +|++|+++..|++++++.
T Consensus 199 ~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 199 ALGALKVAHYGY-VLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHHHCSEEE-EEETTEEEEEEEHHHHHT
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHhc
Confidence 46778999996 599999999998887764
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-42 Score=322.20 Aligned_cols=197 Identities=15% Similarity=0.118 Sum_probs=161.5
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 12 ~~~~l~i~~l~~~y~~~---~v---l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKK---EI---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVV 80 (256)
T ss_dssp --CCEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETT
T ss_pred cCCeEEEEEEEEEECCE---EE---EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence 67899999999999752 46 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. .....+..++|++|++.+++. ++.+|+.++.... .....+.++++.++++.+++.+
T Consensus 81 ~----------------~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~----- 138 (256)
T 1vpl_A 81 E----------------EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY-ASSSSEIEEMVERATEIAGLGE----- 138 (256)
T ss_dssp T----------------CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCGG-----
T ss_pred c----------------cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCch-----
Confidence 1 111234568889998877766 8999998753211 1122334567888999999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
++++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 139 ------------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 139 ------------KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp ------------GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 45899999999999999999999 999999753 899999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+.+..+||+++ +|++|+++..|++++++..
T Consensus 207 ~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 207 LEVEFLCDRIA-LIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHHTTTCSEEE-EEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHCCEEE-EEECCEEEEecCHHHHHHh
Confidence 56778999996 5999999999998888653
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-42 Score=316.05 Aligned_cols=192 Identities=20% Similarity=0.131 Sum_probs=152.9
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~y~~~---~~---l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 71 (224)
T 2pcj_A 3 EILRAENIKKVIRGY---EI---LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-----PTEGKVFLEGKEVDYT 71 (224)
T ss_dssp EEEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-----CSEEEEEETTEECCSS
T ss_pred cEEEEEeEEEEECCE---ee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCCC
Confidence 579999999999752 45 666999999999999999999999999999999999 9999999999886410
Q ss_pred eEeEeeeecCCCcceeeeecC-CCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
. .......+ ..++||+|++.+++. ++.+|+.++.... .......++++.++++.+++.+
T Consensus 72 ~------------~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------ 132 (224)
T 2pcj_A 72 N------------EKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM-GKPKKEAKERGEYLLSELGLGD------ 132 (224)
T ss_dssp C------------HHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTT------
T ss_pred C------------HHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCch------
Confidence 0 00001112 457889998877766 8899998764311 1222344567888999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcC-c
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG-D 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~-~ 295 (361)
++++++.+||||||||++||||| ||||++||. |+|||++||+ .
T Consensus 133 -----------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~ 201 (224)
T 2pcj_A 133 -----------KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE 201 (224)
T ss_dssp -----------CTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 45899999999999999999999 999999753 8999999993 2
Q ss_pred cccccchhhHhhhhhhhcCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~ 317 (361)
...+||+++ +|++|++++.|+
T Consensus 202 ~~~~~d~v~-~l~~G~i~~~g~ 222 (224)
T 2pcj_A 202 LAELTHRTL-EMKDGKVVGEIT 222 (224)
T ss_dssp HHTTSSEEE-EEETTEEEEEEE
T ss_pred HHHhCCEEE-EEECCEEEEEee
Confidence 238899996 599999987764
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=319.19 Aligned_cols=197 Identities=13% Similarity=0.138 Sum_probs=160.5
Q ss_pred ccccccceeeec-Ccc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYT-PGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~-~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+|+++||+++|+ ++. ..++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~- 72 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKA---LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-----PTSGDVLYDGERKK- 72 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECC-
T ss_pred EEEEEEEEEEecCCCccccce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEECc-
Confidence 589999999997 221 0145 666999999999999999999999999999999999 99999999998764
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccch-HH-HHHHHHhccccceeEEecCCChhhhhhhcccccccCCC--ccee
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI-NM-IKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE--PSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~-~l-~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~--~~~~ 238 (361)
.. ..+..++||+|++ .. +..++.+|+.++.... ......++++.++++.+++. +
T Consensus 73 --------------~~---~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~--- 130 (266)
T 2yz2_A 73 --------------GY---EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDS--- 130 (266)
T ss_dssp --------------HH---HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT--CTTSCSHHHHHHHHHHTTCCHHH---
T ss_pred --------------hH---HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCcCCcc---
Confidence 11 3345688899985 33 3348999998764311 22234456788899999998 7
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH 293 (361)
++++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 131 --------------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtH 196 (266)
T 2yz2_A 131 --------------FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 196 (266)
T ss_dssp --------------HTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred --------------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 45899999999999999999999 999999753 899999999
Q ss_pred --CccccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
+.+..+||+++ +|++|+++..|++++++..+..
T Consensus 197 d~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~ 231 (266)
T 2yz2_A 197 DIETVINHVDRVV-VLEKGKKVFDGTRMEFLEKYDP 231 (266)
T ss_dssp CCTTTGGGCSEEE-EEETTEEEEEEEHHHHHHHSCC
T ss_pred CHHHHHHhCCEEE-EEECCEEEEeCCHHHHhcCccc
Confidence 56778899996 5999999999999988876654
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=310.38 Aligned_cols=201 Identities=13% Similarity=0.152 Sum_probs=152.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|+++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 1 ml~~~~l~~~y~~~~--~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~--- 67 (243)
T 1mv5_A 1 MLSARHVDFAYDDSE--QI---LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPID--- 67 (243)
T ss_dssp CEEEEEEEECSSSSS--CS---EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEEST---
T ss_pred CEEEEEEEEEeCCCC--ce---EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhh---
Confidence 478999999994322 45 666999999999999999999999999999999999 99999999998875
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.......+..++|++|++.+++.++.+|+.++... ....+++.++++.+++.+.+.+.++
T Consensus 68 ------------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~-- 127 (243)
T 1mv5_A 68 ------------NISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG------DYTDEDLWQVLDLAFARSFVENMPD-- 127 (243)
T ss_dssp ------------TTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTS------CSCHHHHHHHHHHHTCTTTTTSSTT--
T ss_pred ------------hCCHHHHHhhEEEEcCCCccccccHHHHHhhhccC------CCCHHHHHHHHHHhChHHHHHhCcc--
Confidence 12223346678999999887766999999876320 1123445566666666542100000
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEcC-ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTHG-DLLSL 299 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH~-~~~~~ 299 (361)
+-...+++++.+||||||||++||||| ||||++||. |+|||++||+ .....
T Consensus 128 ----gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~ 203 (243)
T 1mv5_A 128 ----QLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD 203 (243)
T ss_dssp ----GGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH
T ss_pred ----chhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHh
Confidence 000012456789999999999999999 999999764 8999999993 33356
Q ss_pred cchhhHhhhhhhhcCCCCcccccc
Q 018083 300 TDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
|||++ +|++|++++.|++++++.
T Consensus 204 ~d~v~-~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 204 ADKIY-FIEKGQITGSGKHNELVA 226 (243)
T ss_dssp CSEEE-EEETTEECCCSCHHHHHH
T ss_pred CCEEE-EEECCEEEEeCCHHHHHh
Confidence 99996 599999999999887765
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=318.15 Aligned_cols=203 Identities=13% Similarity=0.123 Sum_probs=159.7
Q ss_pred HhhhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc
Q 018083 79 RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 158 (361)
Q Consensus 79 ~~~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 158 (361)
++...++|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 15 ~~~~~~~l~~~~l~~~y~~~---~v---L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~ 83 (279)
T 2ihy_A 15 PRGSHMLIQLDQIGRMKQGK---TI---LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGK 83 (279)
T ss_dssp ----CEEEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTB
T ss_pred CCCCCceEEEEeEEEEECCE---EE---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCeEEEECCE
Confidence 33455679999999999753 45 666999999999999999999999999999999999 99999999998
Q ss_pred ccCcceEeEeeeecCCCcceeeeecCCCCcccccchHH-HHH--HHHhccccceeEE---ecCCChhhhhhhcccccccC
Q 018083 159 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINM-IKL--WIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 159 ~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l-~~~--ti~~ni~~~~~~~---~~~~~~~~~~~v~~~l~~~g 232 (361)
++... .....+.+..++|++|++.+ +.. ++.+|+.++.... ......+..+++.++++.++
T Consensus 84 ~~~~~-------------~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 150 (279)
T 2ihy_A 84 MPGKV-------------GYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVG 150 (279)
T ss_dssp CCC----------------CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTT
T ss_pred Ecccc-------------cCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcC
Confidence 76300 01112235668999999864 322 8999998864321 11123344567888999999
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------Ccc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKP 287 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~t 287 (361)
+.+ ++++++.+||||||||++||||| ||||++||. |+|
T Consensus 151 l~~-----------------~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~t 213 (279)
T 2ihy_A 151 MSA-----------------KAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPT 213 (279)
T ss_dssp CGG-----------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTT
T ss_pred Chh-----------------HhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCE
Confidence 987 45899999999999999999999 999999763 789
Q ss_pred E--EEEEc--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 288 V--VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 288 v--IiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
| |+||| +.+..+||+++ +|++|++++.|++++++.
T Consensus 214 v~~iivtHd~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 214 LAMIYVTHFIEEITANFSKIL-LLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp CEEEEEESCGGGCCTTCCEEE-EEETTEEEEEEEHHHHCS
T ss_pred EEEEEEecCHHHHHHhCCEEE-EEECCEEEEECCHHHHhc
Confidence 9 99999 56778999996 599999999998887754
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-41 Score=313.52 Aligned_cols=202 Identities=12% Similarity=0.121 Sum_probs=152.8
Q ss_pred ccccccceeeec-CcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~-~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
-++++||+++|+ ++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 7 ~~~~~~l~~~y~~~~~--~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~~~-- 74 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSP--VI---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLA-- 74 (247)
T ss_dssp EEEEEEEEEESSTTSC--EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETT--
T ss_pred ceeEEEEEEEeCCCCc--ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhh--
Confidence 478999999993 232 45 666999999999999999999999999999999999 99999999998875
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..++||+|++.+++.++.+|+.++.. ....+++.++++.+++.+.+.+.++
T Consensus 75 -------------~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~- 133 (247)
T 2ff7_A 75 -------------LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-------GMSVEKVIYAAKLAGAHDFISELRE- 133 (247)
T ss_dssp -------------TSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCT-------TCCHHHHHHHHHHHTCHHHHHTSTT-
T ss_pred -------------hCCHHHHHhcEEEEeCCCccccccHHHHHhccCC-------CCCHHHHHHHHHHhChHHHHHhCcc-
Confidence 1122223456889999988776699999987632 1123445566777776541100000
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Ccccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLS 298 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~~ 298 (361)
+-...+++++.+||||||||++||||| ||||++||. |+|||++|| .....
T Consensus 134 -----gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 134 -----GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp -----GGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred -----hhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 000012445689999999999999999 999999753 899999999 23335
Q ss_pred ccchhhHhhhhhhhcCCCCccccccCC
Q 018083 299 LTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
.||+++ +|++|++++.|++++++..|
T Consensus 209 ~~d~v~-~l~~G~i~~~g~~~~l~~~~ 234 (247)
T 2ff7_A 209 NADRII-VMEKGKIVEQGKHKELLSEP 234 (247)
T ss_dssp TSSEEE-EEETTEEEEEECHHHHHTST
T ss_pred hCCEEE-EEECCEEEEECCHHHHHhCC
Confidence 699996 59999999999999988765
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-41 Score=334.42 Aligned_cols=202 Identities=13% Similarity=0.166 Sum_probs=167.6
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.+.|+++||+++|+.+. ..+ |++|||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.
T Consensus 17 ~~~i~~~~l~~~y~~~~-~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~~i~- 85 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGG-NAI---LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGVSWD- 85 (390)
T ss_dssp SCCEEEEEEEEESSSSS-CCS---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSCBTT-
T ss_pred CCeEEEEEEEEEecCCC-eEE---eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCEECC-
Confidence 35799999999995332 256 666999999999999999999999999999999985 5799999999886
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.....+.++.++||||++.+|+.++.+|+.+.. ...++++.++++.+++.+
T Consensus 86 --------------~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~--------~~~~~~v~~~l~~~~L~~------- 136 (390)
T 3gd7_A 86 --------------SITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNA--------AHSDQEIWKVADEVGLRS------- 136 (390)
T ss_dssp --------------SSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTC--------CSCHHHHHHHHHHTTCHH-------
T ss_pred --------------cCChHHHhCCEEEEcCCcccCccCHHHHhhhcc--------ccCHHHHHHHHHHhCCHH-------
Confidence 223334456789999999888779999997422 123456778899999987
Q ss_pred EEEEEEechhhhhhccCC-----------chhhhhhhhhhhhcc---------CCCceeecC---------------Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGD-----------SDVEKQYNQIVATTF---------NCPYLSFRD---------------DKP 287 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~-----------LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~t 287 (361)
+++++|.+ ||||||||++||||| ||||++||. ++|
T Consensus 137 ----------~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~t 206 (390)
T 3gd7_A 137 ----------VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCT 206 (390)
T ss_dssp ----------HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSC
T ss_pred ----------HHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCE
Confidence 56888888 999999999999999 999999753 889
Q ss_pred EEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 288 VVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 288 vIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+|++|| .++...||||+ +|++|+|++.|++++++..|.+.+++.++.
T Consensus 207 vi~vtHd~e~~~~aDri~-vl~~G~i~~~g~~~el~~~p~~~~va~f~g 254 (390)
T 3gd7_A 207 VILCEARIEAMLECDQFL-VIEENKVRQYDSILELYHYPADRFVAGFIG 254 (390)
T ss_dssp EEEECSSSGGGTTCSEEE-EEETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred EEEEEcCHHHHHhCCEEE-EEECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence 999999 56667799996 599999999999999999987766655544
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-41 Score=376.02 Aligned_cols=229 Identities=15% Similarity=0.130 Sum_probs=185.2
Q ss_pred hhhhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 62 RRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
..+..|+.++++..++.... ..+.|+++||+++|+++...++ |+|+||+|++||.+|||||||||||||
T Consensus 1045 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~V---L~~isl~I~~Ge~vaIVG~SGsGKSTL 1121 (1321)
T 4f4c_A 1045 TFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI---LKGLSFSVEPGQTLALVGPSGCGKSTV 1121 (1321)
T ss_dssp HHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCS---EEEEEEEECTTCEEEEECSTTSSTTSH
T ss_pred HHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCcc---ccceeEEECCCCEEEEECCCCChHHHH
Confidence 34455889988766554322 2236999999999975433356 666999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 134 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
+++|.|+++ |++|+|.+||.|+. .+.+.++|+.+++|+|++.+|..||++||.+|..
T Consensus 1122 ~~lL~rl~~-----p~~G~I~iDG~di~---------------~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld--- 1178 (1321)
T 4f4c_A 1122 VALLERFYD-----TLGGEIFIDGSEIK---------------TLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLD--- 1178 (1321)
T ss_dssp HHHHTTSSC-----CSSSEEEETTEETT---------------TBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSC---
T ss_pred HHHHhcCcc-----CCCCEEEECCEEhh---------------hCCHHHHHhheEEECCCCEeeCccHHHHHhccCC---
Confidence 999999999 99999999999997 6788889999999999999999999999998753
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
+.+...+++.++++.+++.+.+...++.+.+.|+ .....||||||||+|||||| |||||+||.
T Consensus 1179 --~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg------e~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~ 1250 (1321)
T 4f4c_A 1179 --PSSVTMAQVEEAARLANIHNFIAELPEGFETRVG------DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 1250 (1321)
T ss_dssp --TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEET------TTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTS
T ss_pred --CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEec------CCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCH
Confidence 1234556788888988887643222222333232 33457999999999999998 999999764
Q ss_pred ---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 285 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 ---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
++|+|+||| -.....||||+ ||++|+|++.|+|++++..+
T Consensus 1251 ~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~-Vld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1251 ESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIA-VVSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp HHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEE-EESSSSEEEEECHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEE-EEECCEEEEECCHHHHHhCC
Confidence 899999999 45557799995 69999999999999999864
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-40 Score=340.69 Aligned_cols=225 Identities=12% Similarity=0.175 Sum_probs=174.9
Q ss_pred hhhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhh
Q 018083 63 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 136 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~ 136 (361)
....|+.++++.+++.... ....|+++|++++|+++. .++ |+++||+|++||+++|+||||||||||+++
T Consensus 313 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~i~l~i~~G~~~~ivG~sGsGKSTll~~ 388 (582)
T 3b5x_A 313 AACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKE-KPA---LSHVSFSIPQGKTVALVGRSGSGKSTIANL 388 (582)
T ss_pred HHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCC-ccc---cccceEEECCCCEEEEECCCCCCHHHHHHH
Confidence 3455899998765432111 134699999999997531 245 566999999999999999999999999999
Q ss_pred hhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCC
Q 018083 137 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 216 (361)
Q Consensus 137 I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~ 216 (361)
|+|+++ |++|+|.++|+++. .....+.+..+++|+|++.+|+.++.+|+.++..
T Consensus 389 l~g~~~-----p~~G~i~~~g~~~~---------------~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~------ 442 (582)
T 3b5x_A 389 FTRFYD-----VDSGSICLDGHDVR---------------DYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE------ 442 (582)
T ss_pred HhcCCC-----CCCCEEEECCEEhh---------------hCCHHHHhcCeEEEcCCCccccccHHHHHhccCC------
Confidence 999999 99999999998875 2333455678999999999998899999998641
Q ss_pred ChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---
Q 018083 217 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 284 (361)
Q Consensus 217 ~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--- 284 (361)
....++++.++++.+++.+.+.+.++.+.. ...+.+.+||||||||++||||| ||||++||.
T Consensus 443 ~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t------~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~ 516 (582)
T 3b5x_A 443 GEYTREQIEQAARQAHAMEFIENMPQGLDT------VIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE 516 (582)
T ss_pred CCCCHHHHHHHHHHCCCHHHHHhCcccccc------hhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 112345677788888887644333333333 22445689999999999999999 999999763
Q ss_pred ------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|+|+|+||| ......||+|+ +|++|++++.|++++++..
T Consensus 517 ~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 517 RAIQAALDELQKNKTVLVIAHRLSTIEQADEIL-VVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 899999999 33345799995 6999999999999998764
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=316.04 Aligned_cols=198 Identities=10% Similarity=0.122 Sum_probs=153.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++||+++|+++...++ |++|||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~- 84 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQV---LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEPLV- 84 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCC---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG-
T ss_pred CceEEEEEEEEEeCCCCCcee---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEcc-
Confidence 357999999999975111245 666999999999999999999999999999999999 99999999998874
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCC-hhh-----hhhhccccccc--CCC
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS-SSL-----RNRMRCKAHKI--GCE 234 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~-~~~-----~~~v~~~l~~~--gl~ 234 (361)
.......+..++||+|++.+++.++.+|+.++... ... ... ...+.++++.+ ++.
T Consensus 85 --------------~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~gl~ 147 (271)
T 2ixe_A 85 --------------QYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR---TPTMEEITAVAMESGAHDFISGFPQGYD 147 (271)
T ss_dssp --------------GBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSS---CCCHHHHHHHHHHHTCHHHHHHSTTGGG
T ss_pred --------------cCCHHHHhccEEEEecCCccccccHHHHHhhhccc---CChHHHHHHHHHHHhHHHHHHhhhcchh
Confidence 11112234568899999877767999999886531 111 111 12344556666 666
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPV 288 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tv 288 (361)
. .+++++.+||||||||++||||| ||||++||. |+||
T Consensus 148 ~-----------------~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tv 210 (271)
T 2ixe_A 148 T-----------------EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTV 210 (271)
T ss_dssp S-----------------BCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEE
T ss_pred h-----------------hhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEE
Confidence 5 34888999999999999999999 999999642 7899
Q ss_pred EEEEcC-ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 289 VVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 289 IiiTH~-~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|+|||+ .....||+++ +|++|++++.|++++++..
T Consensus 211 iivtHd~~~~~~~d~v~-~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 211 LLITQQLSLAERAHHIL-FLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp EEECSCHHHHTTCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred EEEeCCHHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 999993 2334599996 5999999999999888754
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-40 Score=308.87 Aligned_cols=192 Identities=14% Similarity=0.079 Sum_probs=146.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhh--hcccccccccceeeecccccC
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl--~~~~~~~p~~G~I~i~G~~i~ 161 (361)
++|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|+++.
T Consensus 2 ~~l~~~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 2 SQLEIRDLWASIDGE---TI---LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-----VERGEILLDGENIL 70 (250)
T ss_dssp CEEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEECT
T ss_pred ceEEEEeEEEEECCE---EE---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEECC
Confidence 369999999999752 45 6669999999999999999999999999999998 77 99999999998874
Q ss_pred cceEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEec--CCChhhhhhhcccccccCCC-cc
Q 018083 162 GTYFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCE-PS 236 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~--~~~~~~~~~v~~~l~~~gl~-~~ 236 (361)
. ..... .+..+++++|++.+++. ++.+|+.++...... ....+..+++.++++.+++. +
T Consensus 71 ~---------------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~- 134 (250)
T 2d2e_A 71 E---------------LSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDES- 134 (250)
T ss_dssp T---------------SCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGG-
T ss_pred C---------------CCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChh-
Confidence 1 11111 12346788998877765 788888765321001 11123346778889999995 5
Q ss_pred eeEEEEEEEEEEechhhhhhccCC-chhhhhhhhhhhhcc---------CCCceeecC----------------CccEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 290 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~-LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIi 290 (361)
++++++.+ ||||||||++||||| ||||++||. |+|||+
T Consensus 135 ----------------~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 198 (250)
T 2d2e_A 135 ----------------YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALV 198 (250)
T ss_dssp ----------------GGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEE
T ss_pred ----------------HhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45889999 999999999999999 999999653 789999
Q ss_pred EEc--Cccccc-cchhhHhhhhhhhcCCCCcc
Q 018083 291 VTH--GDLLSL-TDRARIRTYLGELLGIPPAK 319 (361)
Q Consensus 291 iTH--~~~~~~-aDri~vvl~~G~iv~~g~~~ 319 (361)
+|| +.+..+ |||++ +|++|+++..|+++
T Consensus 199 vtHd~~~~~~~~~d~v~-~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 199 ITHYQRILNYIQPDKVH-VMMDGRVVATGGPE 229 (250)
T ss_dssp ECSSSGGGGTSCCSEEE-EEETTEEEEEESHH
T ss_pred EecCHHHHHHhcCCEEE-EEECCEEEEEeCHH
Confidence 999 456667 59996 59999999887764
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-40 Score=341.91 Aligned_cols=224 Identities=14% Similarity=0.165 Sum_probs=170.1
Q ss_pred hhhhHHHHHHHHhHHHHHhh-------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh
Q 018083 62 RRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 134 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~-------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl 134 (361)
.....|+.++++.+++.... ..+.|+++|++++|+++. ++ |+|+||+|++||+++|+||||||||||+
T Consensus 324 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~--~~---l~~isl~i~~G~~~~ivG~sGsGKSTll 398 (598)
T 3qf4_B 324 LASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKK--PV---LKDITFHIKPGQKVALVGPTGSGKTTIV 398 (598)
T ss_dssp HHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSSSS--CS---CCSEEEECCTTCEEEEECCTTSSTTHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCC--cc---ccceEEEEcCCCEEEEECCCCCcHHHHH
Confidence 34455899988755432111 223599999999997543 46 5669999999999999999999999999
Q ss_pred hhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec
Q 018083 135 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 214 (361)
Q Consensus 135 ~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~ 214 (361)
++|+|+++ |++|+|.++|.++. .+...+.+..+++|+|++.+|+.++.+|+.++..
T Consensus 399 ~~l~g~~~-----p~~G~i~~~g~~i~---------------~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~---- 454 (598)
T 3qf4_B 399 NLLMRFYD-----VDRGQILVDGIDIR---------------KIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP---- 454 (598)
T ss_dssp HHHTTSSC-----CSEEEEEETTEEGG---------------GSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST----
T ss_pred HHHhcCcC-----CCCeEEEECCEEhh---------------hCCHHHHHhceEEEeCCCccccccHHHHHhcCCC----
Confidence 99999999 99999999999886 3344456777999999999988899999997632
Q ss_pred CCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-
Q 018083 215 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 284 (361)
Q Consensus 215 ~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~- 284 (361)
....+++.++++.+++.+.+...++.+ .....+.+.+||||||||++||||| ||||++||.
T Consensus 455 ---~~~~~~~~~~~~~~~~~~~~~~~~~g~------~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~ 525 (598)
T 3qf4_B 455 ---GATDEEIKEAAKLTHSDHFIKHLPEGY------ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK 525 (598)
T ss_dssp ---TCCTTHHHHHTTTTTCHHHHHTSTTGG------GCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHH
T ss_pred ---CCCHHHHHHHHHHhCCHHHHHhccccc------cchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 122345566677776654210000000 0012344578999999999999999 999999763
Q ss_pred --------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 --------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|+|+|+||| -.....||+|+ +|++|++++.|++++++..
T Consensus 526 ~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 526 TEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLII-VLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEE-EECSSSEEECSCHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhC
Confidence 899999999 33445699995 6999999999999998864
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-40 Score=340.21 Aligned_cols=227 Identities=11% Similarity=0.106 Sum_probs=171.3
Q ss_pred hhhhhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcch
Q 018083 61 QRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 132 (361)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKST 132 (361)
.+....|+.++++.+++.... ..+.++++|++++|+++. .++ |+|+||+|++||+++|+|||||||||
T Consensus 307 ~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~isl~i~~G~~~~ivG~sGsGKST 382 (578)
T 4a82_A 307 SFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNE-API---LKDINLSIEKGETVAFVGMSGGGKST 382 (578)
T ss_dssp HHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSS-CCS---EEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred HHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCC-Ccc---eeeeEEEECCCCEEEEECCCCChHHH
Confidence 334455999998765443211 123599999999997533 245 66699999999999999999999999
Q ss_pred hhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEE
Q 018083 133 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 212 (361)
Q Consensus 133 Ll~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~ 212 (361)
|+++|+|+++ |++|+|.++|+++. .+...+.+..+++|+|++.+|+.++.+|+.++..
T Consensus 383 ll~~l~g~~~-----p~~G~i~~~g~~~~---------------~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-- 440 (578)
T 4a82_A 383 LINLIPRFYD-----VTSGQILIDGHNIK---------------DFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-- 440 (578)
T ss_dssp HHTTTTTSSC-----CSEEEEEETTEEGG---------------GSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS--
T ss_pred HHHHHhcCCC-----CCCcEEEECCEEhh---------------hCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC--
Confidence 9999999999 99999999999886 3344456778999999999988899999998643
Q ss_pred ecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec
Q 018083 213 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 283 (361)
Q Consensus 213 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~ 283 (361)
....+++.++++.+++.+.+...++.+ .....+.+.+||||||||++||||| ||||++||
T Consensus 441 -----~~~~~~~~~~~~~~~~~~~~~~lp~g~------~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD 509 (578)
T 4a82_A 441 -----TATDEEVVEAAKMANAHDFIMNLPQGY------DTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509 (578)
T ss_dssp -----SCCHHHHHHHHHHTTCHHHHHTSTTGG------GCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCC
T ss_pred -----CCCHHHHHHHHHHhCcHHHHHhCcchh------hhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 122344555566665543110000000 0022455678999999999999999 99999976
Q ss_pred C---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 284 D---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 284 ~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
. ++|+|+||| -.....||||+ +|++|++++.|++++++..+
T Consensus 510 ~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~-~l~~G~i~~~g~~~el~~~~ 566 (578)
T 4a82_A 510 LESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIV-VIENGHIVETGTHRELIAKQ 566 (578)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEE-EEETTEEEEEECHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhCC
Confidence 3 899999999 33445699995 69999999999999988653
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=337.66 Aligned_cols=225 Identities=11% Similarity=0.141 Sum_probs=170.7
Q ss_pred hhhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhh
Q 018083 63 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 136 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~ 136 (361)
....|+.++++.+++.... ....|+++|++++|+++. .++ |+++||+|++||+++|+||||||||||+++
T Consensus 313 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~ 388 (582)
T 3b60_A 313 AACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGRE-VPA---LRNINLKIPAGKTVALVGRSGSGKSTIASL 388 (582)
T ss_dssp HHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEEECTTSSHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCC-Ccc---ccceeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 3455899998765432111 134699999999997431 145 666999999999999999999999999999
Q ss_pred hhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCC
Q 018083 137 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 216 (361)
Q Consensus 137 I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~ 216 (361)
|+|+++ |++|+|.++|+++. .....+.+..+++|+|++.+|+.++.+|+.++..
T Consensus 389 l~g~~~-----p~~G~i~~~g~~~~---------------~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~------ 442 (582)
T 3b60_A 389 ITRFYD-----IDEGHILMDGHDLR---------------EYTLASLRNQVALVSQNVHLFNDTVANNIAYART------ 442 (582)
T ss_dssp HTTTTC-----CSEEEEEETTEETT---------------TBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT------
T ss_pred HhhccC-----CCCCeEEECCEEcc---------------ccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC------
Confidence 999999 99999999999875 2333445667899999999888899999998641
Q ss_pred ChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---
Q 018083 217 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 284 (361)
Q Consensus 217 ~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--- 284 (361)
....++++.++++.+++.+.+.+.++.+ ....++.+.+||||||||++||||| ||||++||.
T Consensus 443 ~~~~~~~~~~~l~~~~l~~~~~~~p~g~------~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~ 516 (582)
T 3b60_A 443 EEYSREQIEEAARMAYAMDFINKMDNGL------DTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516 (582)
T ss_dssp SCCCHHHHHHHHHTTTCHHHHHHSTTGG------GSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHH
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhccccc------cccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHH
Confidence 1122456777788888765220000000 0012345679999999999999999 999999763
Q ss_pred ------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|+|+|+||| ......||||+ +|++|++++.|++++++..
T Consensus 517 ~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 517 RAIQAALDELQKNRTSLVIAHRLSTIEQADEIV-VVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE-EEECCEEEEecCHHHHHHc
Confidence 899999999 34446799995 6999999999999988764
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=307.97 Aligned_cols=199 Identities=15% Similarity=0.059 Sum_probs=147.5
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhh--hcccccccccceeeecccc
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSV 159 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl--~~~~~~~p~~G~I~i~G~~ 159 (361)
.+++|+++||+++|++. ++ |+++||+|++|++++|+||||||||||+|+|+|+ ++ |++|+|.++|++
T Consensus 17 ~~~~l~~~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~ 85 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVEDK---AI---LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKD 85 (267)
T ss_dssp ---CEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEE
T ss_pred CCceEEEEeEEEEECCE---EE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCCeEEEECCEE
Confidence 45589999999999652 45 6669999999999999999999999999999999 46 899999999987
Q ss_pred cCcceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEE---ec---CCChhhhhhhccccccc
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVI---RR---SDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~---~~---~~~~~~~~~v~~~l~~~ 231 (361)
+.. ...... +..+++++|++.+++. ++.+|+.+..... .. .+..+..+++.++++.+
T Consensus 86 i~~---------------~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (267)
T 2zu0_C 86 LLA---------------LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALL 150 (267)
T ss_dssp GGG---------------SCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHT
T ss_pred CCc---------------CCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHc
Confidence 641 111111 1235677777655544 5555554422000 00 11223356788899999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccC-Cchhhhhhhhhhhhcc---------CCCceeecC----------------C
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------D 285 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g 285 (361)
++... ++++++. +||||||||++||||| ||||++||. |
T Consensus 151 gl~~~----------------~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g 214 (267)
T 2zu0_C 151 KMPED----------------LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGK 214 (267)
T ss_dssp TCCTT----------------TTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSS
T ss_pred CCChh----------------HhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99632 3478887 5999999999999999 999999753 7
Q ss_pred ccEEEEEc--Cccccc-cchhhHhhhhhhhcCCCCcccccc
Q 018083 286 KPVVVVTH--GDLLSL-TDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 286 ~tvIiiTH--~~~~~~-aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+|||++|| +.+..+ |||++ +|++|+++..|+++++..
T Consensus 215 ~tviivtHd~~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 215 RSFIIVTHYQRILDYIKPDYVH-VLYQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp CEEEEECSSGGGGGTSCCSEEE-EEETTEEEEEECTTHHHH
T ss_pred CEEEEEeeCHHHHHhhcCCEEE-EEECCEEEEEcCHHHHhh
Confidence 89999999 455565 89996 599999999988877643
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=339.88 Aligned_cols=225 Identities=15% Similarity=0.143 Sum_probs=168.9
Q ss_pred hhhhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 62 RRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
+....|+.++++.+++.... ..+.|+++|++++|+++. .++ |+++||+|++||+++|+||||||||||
T Consensus 310 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~isl~i~~Ge~~~ivG~sGsGKSTl 385 (587)
T 3qf4_A 310 SASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENT-DPV---LSGVNFSVKPGSLVAVLGETGSGKSTL 385 (587)
T ss_dssp HHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEECSSSSSHHHH
T ss_pred HHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCC-Ccc---eeceEEEEcCCCEEEEECCCCCCHHHH
Confidence 33455999999765442211 223699999999996533 246 666999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 134 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
+++|+|+++ |++|+|.++|+++. .+...+.++.+++|+|++.+|+.++.+|+.++..
T Consensus 386 l~~l~g~~~-----~~~G~i~i~g~~i~---------------~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~--- 442 (587)
T 3qf4_A 386 MNLIPRLID-----PERGRVEVDELDVR---------------TVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--- 442 (587)
T ss_dssp HHTTTTSSC-----CSEEEEEESSSBGG---------------GBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS---
T ss_pred HHHHhCCcc-----CCCcEEEECCEEcc---------------cCCHHHHHhheEEECCCCcCcCccHHHHHhccCC---
Confidence 999999999 99999999999986 3444556778999999999988899999998643
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
....+++.++++.+++.+.+...++. -....++++.+||||||||++||||| ||||++||.
T Consensus 443 ----~~~~~~~~~~~~~~~~~~~i~~l~~g------~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~ 512 (587)
T 3qf4_A 443 ----DATDDEIVEAAKIAQIHDFIISLPEG------YDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDP 512 (587)
T ss_dssp ----SCCHHHHHHHHHHTTCHHHHHTSSSG------GGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCH
T ss_pred ----CCCHHHHHHHHHHhCcHHHHHhcccc------hhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 11123333344444432211000000 00023677889999999999999999 999999763
Q ss_pred ---------------CccEEEEEcC-ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ---------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ---------------g~tvIiiTH~-~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|+|+|+|||+ .....||||+ +|++|++++.|++++++..
T Consensus 513 ~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~-vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 513 ITEKRILDGLKRYTKGCTTFIITQKIPTALLADKIL-VLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEE-EEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 8999999993 3345899995 6999999999999998764
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=304.59 Aligned_cols=204 Identities=11% Similarity=0.159 Sum_probs=152.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++||+++|++....++ |+++||+|++|++++|+||||||||||+|+|+|+++ | +|+|.++|.++.
T Consensus 15 ~~~l~i~~l~~~y~~~~~~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~-~G~I~i~g~~i~- 84 (260)
T 2ghi_A 15 GVNIEFSDVNFSYPKQTNHRT---LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-----A-EGDIKIGGKNVN- 84 (260)
T ss_dssp CCCEEEEEEEECCTTCCSSCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----C-EEEEEETTEEGG-
T ss_pred CCeEEEEEEEEEeCCCCcCce---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----C-CeEEEECCEEhh-
Confidence 357999999999975321245 666999999999999999999999999999999998 8 799999998874
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.......+..++||+|++.+++.++.+|+.++.. . ...+++.++++.+++.+.+..-++
T Consensus 85 --------------~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~---~----~~~~~~~~~l~~~~l~~~~~~l~~ 143 (260)
T 2ghi_A 85 --------------KYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL---D----ATDEEVIKATKSAQLYDFIEALPK 143 (260)
T ss_dssp --------------GBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCT---T----CCHHHHHHHHHHTTCHHHHHTSTT
T ss_pred --------------hcCHHHHhccEEEEcCCCcccccCHHHHHhccCC---C----CCHHHHHHHHHHhCCHHHHHhccc
Confidence 1222234567899999988776699999987532 1 112345555666665431100000
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Cccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLL 297 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~ 297 (361)
.....+++++.+||||||||++||||| ||||++||. ++|||++|| ....
T Consensus 144 ------~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~ 217 (260)
T 2ghi_A 144 ------KWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTI 217 (260)
T ss_dssp ------GGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGS
T ss_pred ------cccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH
Confidence 000012467889999999999999999 999999753 789999999 2333
Q ss_pred cccchhhHhhhhhhhcCCCCccccccC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
..||+++ +|++|++++.|++++++..
T Consensus 218 ~~~d~i~-~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 218 SSAESII-LLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp TTCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred HhCCEEE-EEECCEEEEECCHHHHHhc
Confidence 5699996 5999999999999888653
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-40 Score=367.37 Aligned_cols=225 Identities=13% Similarity=0.139 Sum_probs=183.0
Q ss_pred hhhHHHHHHHHhHHHHHhh---------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 63 RRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~---------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
....|+.++++.++++... ..+.|+++|++|+|++....++ |+|+||+|++|+++|||||||||||||
T Consensus 384 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~v---L~~isl~i~~G~~vaivG~sGsGKSTl 460 (1321)
T 4f4c_A 384 GAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPI---LRGMNLRVNAGQTVALVGSSGCGKSTI 460 (1321)
T ss_dssp HHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCS---EEEEEEEECTTCEEEEEECSSSCHHHH
T ss_pred HHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCce---eeceEEeecCCcEEEEEecCCCcHHHH
Confidence 3345999999876553222 2235999999999975432356 666999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 134 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
+++|.|+++ |++|+|.+||.++. .+....+|+.++||+|++.+|..||.+||.+|..
T Consensus 461 l~ll~~~~~-----~~~G~I~idG~~i~---------------~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~--- 517 (1321)
T 4f4c_A 461 ISLLLRYYD-----VLKGKITIDGVDVR---------------DINLEFLRKNVAVVSQEPALFNCTIEENISLGKE--- 517 (1321)
T ss_dssp HHHHTTSSC-----CSEEEEEETTEETT---------------TSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT---
T ss_pred HHHhccccc-----cccCcccCCCccch---------------hccHHHHhhcccccCCcceeeCCchhHHHhhhcc---
Confidence 999999999 99999999999987 5677778889999999999999999999998753
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
...++++.++++.+++++.+...++.+.++|+ .....||||||||++||||+ |||||+||.
T Consensus 518 ----~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vG------e~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 518 ----GITREEMVAACKMANAEKFIKTLPNGYNTLVG------DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDA 587 (1321)
T ss_dssp ----TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEES------SSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCT
T ss_pred ----cchHHHHHHHHHHccchhHHHcCCCCCccEec------CCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCH
Confidence 33456788888888876644333333333333 34557999999999999999 999999874
Q ss_pred ---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|+|+|+||| -...+.||+|+ +|++|+|++.|++++++..
T Consensus 588 ~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Ii-vl~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 588 ESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLII-SCKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEE-EEETTEEEEEECHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEE-EeeCCeeeccCCHHHHHHh
Confidence 899999999 56668899995 6999999999999998765
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=290.60 Aligned_cols=175 Identities=13% Similarity=0.181 Sum_probs=142.9
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
..+|+++|++++|++ . + |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 8 ~~~l~~~~ls~~y~~--~--i---l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~- 74 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--P--V---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPIT- 74 (214)
T ss_dssp -CEEEEEEEEEESSS--E--E---EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG-
T ss_pred CceEEEEEEEEEeCC--e--E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEhh-
Confidence 357999999999965 3 4 777999999999999999999999999999999999 99999999997652
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
+.+..++|++|++.+++. ++.+|+.++.... .. ... ++++.++++.+++.+
T Consensus 75 -------------------~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~-~~-~~~-~~~~~~~l~~~gl~~------ 126 (214)
T 1sgw_A 75 -------------------KVKGKIFFLPEEIIVPRKISVEDYLKAVASLY-GV-KVN-KNEIMDALESVEVLD------ 126 (214)
T ss_dssp -------------------GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHT-TC-CCC-HHHHHHHHHHTTCCC------
T ss_pred -------------------hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhc-CC-chH-HHHHHHHHHHcCCCc------
Confidence 123457888888877666 8889988754211 11 122 567788899999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
. ++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 127 -----------~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 127 -----------L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp -----------T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred -----------C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6 788999999999999999999 999999864 789999999 6
Q ss_pred ccccccchhhHhhhhhhh
Q 018083 295 DLLSLTDRARIRTYLGEL 312 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~i 312 (361)
.+..+||++ + +..|+|
T Consensus 195 ~~~~~~d~v-~-~~~~~~ 210 (214)
T 1sgw_A 195 SYCDVNENL-H-KYSTKI 210 (214)
T ss_dssp TTSSEEEEG-G-GGBC--
T ss_pred HHHHhCCEE-E-EeCCcc
Confidence 778899999 4 666765
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=299.23 Aligned_cols=182 Identities=12% Similarity=0.105 Sum_probs=147.2
Q ss_pred cccccccceeeec-CcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~-~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++|+++|++++|+ +. ++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+
T Consensus 3 ~~l~i~~l~~~y~~~~---~v---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~------- 64 (253)
T 2nq2_C 3 KALSVENLGFYYQAEN---FL---FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKIEV------- 64 (253)
T ss_dssp EEEEEEEEEEEETTTT---EE---EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-----CSEEEEEE-------
T ss_pred ceEEEeeEEEEeCCCC---eE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEE-------
Confidence 3699999999997 42 45 666999999999999999999999999999999999 99999972
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec---CCChhhhhhhcccccccCCCccee
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~---~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
+..++|++|++.+++. ++.+|+.++...... ......++++.++++.+++.+
T Consensus 65 ---------------------~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--- 120 (253)
T 2nq2_C 65 ---------------------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH--- 120 (253)
T ss_dssp ---------------------CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG---
T ss_pred ---------------------eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH---
Confidence 1235667777665544 788888876421100 112344567888999999987
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
++++++.+||||||||++||||| ||||++||. |+|||++|
T Consensus 121 --------------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vt 186 (253)
T 2nq2_C 121 --------------LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTT 186 (253)
T ss_dssp --------------GTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred --------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45899999999999999999999 999999642 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
| +.+..+||+++ +|++|+ +..|++++++.
T Consensus 187 Hd~~~~~~~~d~v~-~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 187 HQPNQVVAIANKTL-LLNKQN-FKFGETRNILT 217 (253)
T ss_dssp SCHHHHHHHCSEEE-EEETTE-EEEEEHHHHCC
T ss_pred cCHHHHHHhCCEEE-EEeCCe-EecCCHHHHhC
Confidence 9 46678999996 599999 88888877754
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=298.96 Aligned_cols=184 Identities=14% Similarity=0.128 Sum_probs=152.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++ ++ |+++||+|++|++++|+||||||||||+|+|+|+++ |+ |+|.++|+++.
T Consensus 4 ~l~~~~l~~~-------~v---l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~~~--- 64 (249)
T 2qi9_C 4 VMQLQDVAES-------TR---LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQPLE--- 64 (249)
T ss_dssp EEEEEEEEET-------TT---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEEGG---
T ss_pred EEEEEceEEE-------EE---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEECC---
Confidence 6899999987 13 777999999999999999999999999999999999 99 99999998764
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..++|++|++.+++. ++.+|+.++... .. . ++++.++++.+++.+
T Consensus 65 ------------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~--~~---~-~~~~~~~l~~~~l~~-------- 118 (249)
T 2qi9_C 65 ------------AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD--KT---R-TELLNDVAGALALDD-------- 118 (249)
T ss_dssp ------------GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS--TT---C-HHHHHHHHHHTTCGG--------
T ss_pred ------------cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc--CC---c-HHHHHHHHHHcCChh--------
Confidence 11122234457889999877765 899999876321 11 1 567788999999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc----------------CCCceeecC----------------CccEEEE
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVV 291 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----------------DEPt~~L~~----------------g~tvIii 291 (361)
++++++.+||||||||++||||| ||||++||. |+|||++
T Consensus 119 ---------~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviiv 189 (249)
T 2qi9_C 119 ---------KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMS 189 (249)
T ss_dssp ---------GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45899999999999999999998 699999753 8899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
|| +.+..+||+++ +|++|++++.|++++++.
T Consensus 190 tHd~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 190 SHDLNHTLRHAHRAW-LLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CSCHHHHHHHCSEEE-EEETTEEEEEEEHHHHSC
T ss_pred eCCHHHHHHhCCEEE-EEECCEEEEeCCHHHHhc
Confidence 99 46668999996 599999999998887754
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=295.88 Aligned_cols=188 Identities=14% Similarity=0.125 Sum_probs=152.6
Q ss_pred ccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+|+++|++++|++. ...++ |+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.++|+++.
T Consensus 1 ml~~~~l~~~y~~~~~~~~i---l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~------p~~G~I~~~g~~~~-- 68 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFS---LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL------PYSGNIFINGMEVR-- 68 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEE---EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS------CCEEEEEETTEEGG--
T ss_pred CEEEEEEEEEeCCCCcccee---EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC------CCCcEEEECCEECc--
Confidence 47899999999641 00145 666999999 9999999999999999999999997 46899999998764
Q ss_pred eEeEeeeecCCCcceeeeecCCCCc-ccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCC-cceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~-~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~-~~~~~~~ 241 (361)
.. .. +..++ |++|++.+ ..++.+|+.++... . ...++++.++++.+++. +
T Consensus 69 -------------~~--~~-~~~i~~~v~Q~~~l-~~tv~enl~~~~~~---~--~~~~~~~~~~l~~~gl~~~------ 120 (263)
T 2pjz_A 69 -------------KI--RN-YIRYSTNLPEAYEI-GVTVNDIVYLYEEL---K--GLDRDLFLEMLKALKLGEE------ 120 (263)
T ss_dssp -------------GC--SC-CTTEEECCGGGSCT-TSBHHHHHHHHHHH---T--CCCHHHHHHHHHHTTCCGG------
T ss_pred -------------ch--HH-hhheEEEeCCCCcc-CCcHHHHHHHhhhh---c--chHHHHHHHHHHHcCCChh------
Confidence 11 12 45688 99999877 55899999875321 1 12345678889999998 6
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cccc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~ 297 (361)
.+++++.+||||||||++||||| ||||++||. ..|||++|| +.+.
T Consensus 121 -----------~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~ 189 (263)
T 2pjz_A 121 -----------ILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLN 189 (263)
T ss_dssp -----------GGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGG
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHH
Confidence 45899999999999999999999 999999763 229999999 4667
Q ss_pred cccc-hhhHhhhhhhhcCCCCccccccC
Q 018083 298 SLTD-RARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 298 ~~aD-ri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
.+|| +++ +|++|++++.|++++++..
T Consensus 190 ~~~d~~i~-~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 190 LYKEYKAY-FLVGNRLQGPISVSELLES 216 (263)
T ss_dssp GCTTSEEE-EEETTEEEEEEEHHHHHTE
T ss_pred HhcCceEE-EEECCEEEEecCHHHHHhh
Confidence 8999 996 5999999999999888743
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-37 Score=285.77 Aligned_cols=186 Identities=13% Similarity=0.155 Sum_probs=136.1
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++|++++|+... .++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 2 ~~l~~~~l~~~y~~~~-~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~----- 67 (237)
T 2cbz_A 2 NSITVRNATFTWARSD-PPT---LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVAIKGS----- 67 (237)
T ss_dssp CCEEEEEEEEESCTTS-CCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-----EEEEEEEECSC-----
T ss_pred CeEEEEEEEEEeCCCC-Cce---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCE-----
Confidence 3689999999997421 245 666999999999999999999999999999999999 99999999871
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcc---cccccCCCcceeEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC---KAHKIGCEPSVIRK 240 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~---~l~~~gl~~~~~~~ 240 (361)
++|++|++.++..++.+|+.++... .. ...+++.+ +++.+++.+.-
T Consensus 68 -----------------------i~~v~Q~~~~~~~tv~enl~~~~~~----~~-~~~~~~~~~~~l~~~~~~~~~~--- 116 (237)
T 2cbz_A 68 -----------------------VAYVPQQAWIQNDSLRENILFGCQL----EE-PYYRSVIQACALLPDLEILPSG--- 116 (237)
T ss_dssp -----------------------EEEECSSCCCCSEEHHHHHHTTSCC----CT-THHHHHHHHTTCHHHHTTSTTG---
T ss_pred -----------------------EEEEcCCCcCCCcCHHHHhhCcccc----CH-HHHHHHHHHHhhHHHHHhcccc---
Confidence 4455666544433778888875431 11 11122222 22223322100
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec------------------CCccEEEEEc
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR------------------DDKPVVVVTH 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~------------------~g~tvIiiTH 293 (361)
....+++++.+||||||||++||||| ||||++|| .++|||++||
T Consensus 117 ---------~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH 187 (237)
T 2cbz_A 117 ---------DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH 187 (237)
T ss_dssp ---------GGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECS
T ss_pred ---------ccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence 00013678999999999999999999 99999943 2689999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
......||+++ +|++|++++.|++++++..
T Consensus 188 ~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 188 SMSYLPQVDVII-VMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp CSTTGGGSSEEE-EEETTEEEEEECHHHHHHH
T ss_pred ChHHHHhCCEEE-EEeCCEEEEeCCHHHHhhc
Confidence 33345799996 5999999999998887653
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=286.37 Aligned_cols=189 Identities=15% Similarity=0.116 Sum_probs=135.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++|++++|+.+. .++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 5 ~~l~~~~l~~~y~~~~-~~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~----- 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEGG-TPV---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR----- 70 (229)
T ss_dssp EEEEEEEEEECSSTTS-CCS---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEECSC-----
T ss_pred ceEEEEEEEEEeCCCC-cee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEEEECCE-----
Confidence 4799999999996322 245 666999999999999999999999999999999999 99999999871
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
++|++|++.+++.++.+|+.++... .. .++.++++.+++.+.+...+
T Consensus 71 -----------------------i~~v~q~~~~~~~tv~enl~~~~~~-----~~---~~~~~~~~~~~l~~~~~~~~-- 117 (229)
T 2pze_A 71 -----------------------ISFCSQFSWIMPGTIKENIIFGVSY-----DE---YRYRSVIKACQLEEDISKFA-- 117 (229)
T ss_dssp -----------------------EEEECSSCCCCSBCHHHHHHTTSCC-----CH---HHHHHHHHHTTCHHHHTTST--
T ss_pred -----------------------EEEEecCCcccCCCHHHHhhccCCc-----Ch---HHHHHHHHHhCcHHHHHhCc--
Confidence 4456666655555778888775321 11 11112222233321000000
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcC-ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG-DLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~-~~~ 297 (361)
......+++++.+||||||||++||||| ||||++||. ++|||++||+ ...
T Consensus 118 ----~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~ 193 (229)
T 2pze_A 118 ----EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 193 (229)
T ss_dssp ----TGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH
T ss_pred ----ccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHH
Confidence 0000012445689999999999999999 999999642 7899999993 233
Q ss_pred cccchhhHhhhhhhhcCCCCccccccC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
..||+++ +|++|++++.|++++++..
T Consensus 194 ~~~d~v~-~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 194 KKADKIL-ILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp HHCSEEE-EEETTEEEEEECHHHHHTC
T ss_pred HhCCEEE-EEECCEEEEECCHHHHHhc
Confidence 4699996 5999999999998888654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=342.87 Aligned_cols=226 Identities=12% Similarity=0.138 Sum_probs=169.2
Q ss_pred hhhhHHHHHHHHhHHHHHh---------hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcch
Q 018083 62 RRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 132 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~---------~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKST 132 (361)
+.+..|+.++++.+++... ...+.|+++|++|+|+++...++ |+|+||+|++||+++|+|||||||||
T Consensus 355 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~v---L~~isl~i~~G~~~~ivG~sGsGKST 431 (1284)
T 3g5u_A 355 RGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI---LKGLNLKVKSGQTVALVGNSGCGKST 431 (1284)
T ss_dssp HHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCS---EEEEEEEECTTCEEEEECCSSSSHHH
T ss_pred HHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcc---eecceEEEcCCCEEEEECCCCCCHHH
Confidence 3345588888876544321 12236999999999975422346 66699999999999999999999999
Q ss_pred hhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEE
Q 018083 133 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 212 (361)
Q Consensus 133 Ll~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~ 212 (361)
|+++|+|+++ |++|+|.++|.++. .+...+.|..+++|+|++.+|+.++.+||.++..
T Consensus 432 l~~ll~g~~~-----~~~G~i~i~g~~i~---------------~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~-- 489 (1284)
T 3g5u_A 432 TVQLMQRLYD-----PLDGMVSIDGQDIR---------------TINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-- 489 (1284)
T ss_dssp HHHHTTTSSC-----CSEEEEEETTEEGG---------------GSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS--
T ss_pred HHHHHhCCCC-----CCCeEEEECCEEHH---------------hCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC--
Confidence 9999999999 99999999999886 3455566778999999999998899999998754
Q ss_pred ecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec
Q 018083 213 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 283 (361)
Q Consensus 213 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~ 283 (361)
....+++.++++.+++.+.+...++.+ .....+.+.+||||||||++||||| ||||++||
T Consensus 490 -----~~~~~~~~~~~~~~~~~~~i~~l~~g~------~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD 558 (1284)
T 3g5u_A 490 -----DVTMDEIEKAVKEANAYDFIMKLPHQF------DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558 (1284)
T ss_dssp -----SCCHHHHHHHHHHTTCHHHHHHSTTGG------GCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSC
T ss_pred -----CCCHHHHHHHHHHhCcHHHHHhccccc------cccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 112233444445444433110000000 0012456678999999999999999 99999976
Q ss_pred C---------------CccEEEEEcC-ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 284 D---------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 284 ~---------------g~tvIiiTH~-~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
. |+|+|+|||+ .....||+|+ +|++|++++.|++++++..
T Consensus 559 ~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~-vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 559 TESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIA-GFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEE-ECSSSCCCCEECHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhC
Confidence 3 8999999992 3334599995 6999999999999988764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-36 Score=334.69 Aligned_cols=228 Identities=11% Similarity=0.103 Sum_probs=170.4
Q ss_pred hhhhHHHHHHHHhHHHHHh---------hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcch
Q 018083 62 RRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 132 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~---------~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKST 132 (361)
.....|+.++++..++... ...+.++++||+++|++....++ |+++||+|++||++||+|||||||||
T Consensus 998 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~---l~~vsl~i~~Ge~v~ivG~sGsGKST 1074 (1284)
T 3g5u_A 998 TVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPV---LQGLSLEVKKGQTLALVGSSGCGKST 1074 (1284)
T ss_dssp HHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCS---BSSCCEEECSSSEEEEECSSSTTHHH
T ss_pred HHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCee---ecceeEEEcCCCEEEEECCCCCCHHH
Confidence 3445588888876544321 12346999999999975432356 55599999999999999999999999
Q ss_pred hhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEE
Q 018083 133 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 212 (361)
Q Consensus 133 Ll~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~ 212 (361)
|+++|.|+++ |++|+|.++|.++. .....+.|..+++|+|++.+|..++.+|+.++...
T Consensus 1075 l~~~l~g~~~-----p~~G~I~i~g~~i~---------------~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~- 1133 (1284)
T 3g5u_A 1075 VVQLLERFYD-----PMAGSVFLDGKEIK---------------QLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNS- 1133 (1284)
T ss_dssp HHHHHTTSSC-----CSEEEEESSSSCTT---------------SSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSS-
T ss_pred HHHHHhcCcC-----CCCCEEEECCEEcc---------------cCCHHHHHhceEEECCCCccccccHHHHHhccCCC-
Confidence 9999999999 99999999999986 34455678889999999998888999999986531
Q ss_pred ecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec
Q 018083 213 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 283 (361)
Q Consensus 213 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~ 283 (361)
.....+++.++++.+++.+.+.+.++.+.+ ...+.+.+||||||||++||||| ||||++||
T Consensus 1134 ----~~~~~~~i~~~~~~~~~~~~i~~l~~gldt------~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD 1203 (1284)
T 3g5u_A 1134 ----RVVSYEEIVRAAKEANIHQFIDSLPDKYNT------RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203 (1284)
T ss_dssp ----CCCCHHHHHHHHHHHTCHHHHSSTTTGGGC------BCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCC
T ss_pred ----CCCCHHHHHHHHHHhCcHHHHHhCcccccc------ccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 111223344445555544311000000000 12345678999999999999999 99999976
Q ss_pred C---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 284 D---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 284 ~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
. |+|+|+||| -.....||||+ +|++|++++.|++++++..
T Consensus 1204 ~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~-vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1204 TESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIV-VIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp HHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEE-EEETBEEEEEECHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhC
Confidence 3 899999999 33346699996 6999999999999999875
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-35 Score=281.16 Aligned_cols=200 Identities=16% Similarity=0.107 Sum_probs=124.1
Q ss_pred HHHHHHHhHHHHH-----hhhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 67 VFREVLQSYDQLR-----TRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 67 ~~~~~l~~~~~~~-----~~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
++.++++.+.+.. ....++|+++|+++.+ . ++ |+++||+|++|++++|+||||||||||+|+|+|++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~---~v---l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 17 GFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG--T---PV---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHCC-----------------------C--C---CS---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHhcccccccccccccCCCceEEEEEEEEcC--c---eE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 5666665433211 1233579999999864 1 35 66799999999999999999999999999999999
Q ss_pred cccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhh
Q 018083 142 ENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLR 221 (361)
Q Consensus 142 ~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~ 221 (361)
+ |++|+|.++|. ++|++|++.+++.++.+|+. +.. . ..
T Consensus 89 ~-----p~~G~I~~~g~----------------------------i~~v~Q~~~l~~~tv~enl~-~~~----~-~~--- 126 (290)
T 2bbs_A 89 E-----PSEGKIKHSGR----------------------------ISFCSQNSWIMPGTIKENII-GVS----Y-DE--- 126 (290)
T ss_dssp C-----EEEEEEECCSC----------------------------EEEECSSCCCCSSBHHHHHH-TTC----C-CH---
T ss_pred C-----CCCcEEEECCE----------------------------EEEEeCCCccCcccHHHHhh-Ccc----c-ch---
Confidence 9 99999999861 34556665555456777776 321 0 11
Q ss_pred hhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--------
Q 018083 222 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------- 284 (361)
Q Consensus 222 ~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------- 284 (361)
.++.++++.+++.+.+.+.+ ......+++.+.+||||||||++||||| ||||++||.
T Consensus 127 ~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 200 (290)
T 2bbs_A 127 YRYRSVIKACQLEEDISKFA------EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200 (290)
T ss_dssp HHHHHHHHHTTCHHHHHTST------TGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHhcc------ccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHH
Confidence 11222233334332100000 0000012445689999999999999999 999999542
Q ss_pred --------CccEEEEEcC-ccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 285 --------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 285 --------g~tvIiiTH~-~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
++|||++||+ .....||+++ +|++|+++..|++++++.
T Consensus 201 ~ll~~~~~~~tviivtHd~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 201 SCVCKLMANKTRILVTSKMEHLKKADKIL-ILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HCCCCCTTTSEEEEECCCHHHHHHSSEEE-EEETTEEEEEECHHHHHH
T ss_pred HHHHHhhCCCEEEEEecCHHHHHcCCEEE-EEECCeEEEeCCHHHHhh
Confidence 7899999993 3335699996 599999999999888764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-31 Score=272.85 Aligned_cols=178 Identities=15% Similarity=0.135 Sum_probs=132.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++++++|+++.|++. . |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.+. ...
T Consensus 285 ~~~l~~~~l~~~~~~~----~---l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~---~~i 349 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF----R---LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIEWD---LTV 349 (538)
T ss_dssp CEEEEECCEEEEETTE----E---EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCCCC---CCE
T ss_pred CeEEEEeeEEEEECCE----E---EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEC---ceE
Confidence 3579999999999652 2 677999999999999999999999999999999999 999999862 111
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHH-HHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMI-KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
+++ +|++... ..++.+++..... .. ....+.+.++++.+++.+
T Consensus 350 ~~v-------------------------~Q~~~~~~~~tv~~~~~~~~~--~~---~~~~~~~~~~l~~~~l~~------ 393 (538)
T 1yqt_A 350 AYK-------------------------PQYIKADYEGTVYELLSKIDA--SK---LNSNFYKTELLKPLGIID------ 393 (538)
T ss_dssp EEE-------------------------CSSCCCCCSSBHHHHHHHHHH--HH---HTCHHHHHHTTTTTTCGG------
T ss_pred EEE-------------------------ecCCcCCCCCcHHHHHHhhhc--cC---CCHHHHHHHHHHHcCChh------
Confidence 222 2221110 0022222211000 00 011345777899999976
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
.+++++.+||||||||++||||| ||||++||. |.|||+|||
T Consensus 394 -----------~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~ 462 (538)
T 1yqt_A 394 -----------LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 462 (538)
T ss_dssp -----------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred -----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45899999999999999999999 999999652 889999999
Q ss_pred CccccccchhhHhhhh--hhhcCCCCcccccc
Q 018083 294 GDLLSLTDRARIRTYL--GELLGIPPAKQIFD 323 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~--G~iv~~g~~~~i~~ 323 (361)
+++..+|||++ +|++ |+++..|++++++.
T Consensus 463 ~~~~~~~drv~-vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 463 LMIDYVSDRLM-VFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHCSEEE-EEEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEE-EEeCCcceEeecCCHHHHHh
Confidence 57778999996 5885 67777888887764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-31 Score=275.88 Aligned_cols=177 Identities=16% Similarity=0.144 Sum_probs=131.9
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++++++|+++.|++. . |+.+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+. ...+
T Consensus 356 ~~l~~~~l~~~~~~~----~---l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~---~~i~ 420 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF----K---LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVEWD---LTVA 420 (607)
T ss_dssp EEEEECCEEEECSSC----E---EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCCCC---CCEE
T ss_pred eEEEEeceEEEecce----E---EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEEe---eEEE
Confidence 479999999999652 2 677999999999999999999999999999999999 999999872 1112
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHH-HHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMI-KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
+ ++|++... ..++.+++..... .. ....+++.++++.+++.+
T Consensus 421 ~-------------------------v~Q~~~~~~~~tv~e~~~~~~~--~~---~~~~~~~~~~l~~~~l~~------- 463 (607)
T 3bk7_A 421 Y-------------------------KPQYIKAEYEGTVYELLSKIDS--SK---LNSNFYKTELLKPLGIID------- 463 (607)
T ss_dssp E-------------------------ECSSCCCCCSSBHHHHHHHHHH--HH---HHCHHHHHHTHHHHTCTT-------
T ss_pred E-------------------------EecCccCCCCCcHHHHHHhhhc--cC---CCHHHHHHHHHHHcCCch-------
Confidence 2 22221110 0022222221100 00 011345677899999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
++++++.+||||||||++||||| ||||++||. |.|||+||| +
T Consensus 464 ----------~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~ 533 (607)
T 3bk7_A 464 ----------LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 533 (607)
T ss_dssp ----------TTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45899999999999999999999 999999652 889999999 5
Q ss_pred ccccccchhhHhhhh--hhhcCCCCcccccc
Q 018083 295 DLLSLTDRARIRTYL--GELLGIPPAKQIFD 323 (361)
Q Consensus 295 ~~~~~aDri~vvl~~--G~iv~~g~~~~i~~ 323 (361)
.+..+|||++ +|++ |+++..|++++++.
T Consensus 534 ~~~~~adrv~-vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 534 MIDYVSDRLI-VFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHCSEEE-EEEEETTTEEEECCCEEHHH
T ss_pred HHHHhCCEEE-EEcCCcceEEecCCHHHHHh
Confidence 7778999996 5885 66667788887765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-30 Score=263.66 Aligned_cols=168 Identities=11% Similarity=0.079 Sum_probs=125.7
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++++++++++.|++. . |+.+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++..+.
T Consensus 266 ~~~~l~~~~l~~~~~~~----~---l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~i~ 333 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGDF----Q---LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVTPEKQILS 333 (538)
T ss_dssp CCEEEEECCEEEEETTE----E---EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEESSCCCEE
T ss_pred ccceEEEcceEEEECCE----E---EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCeeeE
Confidence 34579999999999752 2 666899999999999999999999999999999999 99999998875542
Q ss_pred cceEeEeeeecCCCcceeeeecCCC-CcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSL-SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~-i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
+.+ ++.... ...|.| |+.+... .. .......+.++++.+++.+
T Consensus 334 --~~~--------------q~~~~~~~~tv~~-----------~l~~~~~---~~-~~~~~~~~~~~l~~~~l~~----- 377 (538)
T 3ozx_A 334 --YKP--------------QRIFPNYDGTVQQ-----------YLENASK---DA-LSTSSWFFEEVTKRLNLHR----- 377 (538)
T ss_dssp --EEC--------------SSCCCCCSSBHHH-----------HHHHHCS---ST-TCTTSHHHHHTTTTTTGGG-----
T ss_pred --eec--------------hhcccccCCCHHH-----------HHHHhhh---hc-cchhHHHHHHHHHHcCCHH-----
Confidence 111 111110 111233 2222100 00 0112345677899999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| ||||++||. |+|||+|||
T Consensus 378 ------------~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 445 (538)
T 3ozx_A 378 ------------LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445 (538)
T ss_dssp ------------CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 45899999999999999999999 999999753 889999999
Q ss_pred -CccccccchhhHhhhhh
Q 018083 294 -GDLLSLTDRARIRTYLG 310 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G 310 (361)
+.+..+||||+ +|+.+
T Consensus 446 l~~~~~~aDri~-vl~~~ 462 (538)
T 3ozx_A 446 LSIHDYIADRII-VFKGE 462 (538)
T ss_dssp HHHHHHHCSEEE-EEEEE
T ss_pred HHHHHHhCCEEE-EEeCC
Confidence 57788999996 58763
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-30 Score=267.75 Aligned_cols=175 Identities=15% Similarity=0.143 Sum_probs=126.6
Q ss_pred ccccc--------ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee--
Q 018083 84 SLTDA--------KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-- 153 (361)
Q Consensus 84 ~~lei--------~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I-- 153 (361)
.+|++ +|++++|++.. .+ |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~--~~---l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-----p~~G~~~~ 150 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNA--FV---LYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-----PNLCEDND 150 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTC--CE---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-----CCTTTTCC
T ss_pred ceEEEecCCccccCCeEEEECCCC--ee---eCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-----CCCCcccc
Confidence 35777 89999997532 35 56699 999999999999999999999999999999 999996
Q ss_pred -------eecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHH----HHHHhccccceeEEecCCChhhhh
Q 018083 154 -------TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK----LWIMEGVRHGELVIRRSDSSSLRN 222 (361)
Q Consensus 154 -------~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~----~ti~~ni~~~~~~~~~~~~~~~~~ 222 (361)
.++|.++.. +. .........+++++|+...++ .++.+++.. ....+
T Consensus 151 ~~~~~~~~~~G~~~~~-~~------------~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----------~~~~~ 207 (607)
T 3bk7_A 151 SWDNVIRAFRGNELQN-YF------------ERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----------VDEVG 207 (607)
T ss_dssp CHHHHHHHTTTSTHHH-HH------------HHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----------TCCSS
T ss_pred ccchhhheeCCEehhh-hh------------hhhhhhhcceEEeechhhhchhhccccHHHHhhh----------hHHHH
Confidence 345544320 00 000001112344455433221 134444431 12235
Q ss_pred hhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------
Q 018083 223 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------- 284 (361)
Q Consensus 223 ~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--------- 284 (361)
++.++++.++|.+ ++++++.+||||||||++||||| ||||++||.
T Consensus 208 ~~~~~L~~lgL~~-----------------~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~ 270 (607)
T 3bk7_A 208 KFEEVVKELELEN-----------------VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARV 270 (607)
T ss_dssp CHHHHHHHTTCTT-----------------GGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCc-----------------hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 6778899999987 46999999999999999999999 999999763
Q ss_pred -------CccEEEEEc--CccccccchhhHhhhhh
Q 018083 285 -------DKPVVVVTH--GDLLSLTDRARIRTYLG 310 (361)
Q Consensus 285 -------g~tvIiiTH--~~~~~~aDri~vvl~~G 310 (361)
|+|||+||| +.+..+||||+ +|+++
T Consensus 271 L~~l~~~g~tvIivsHdl~~~~~~adri~-vl~~~ 304 (607)
T 3bk7_A 271 IRRLANEGKAVLVVEHDLAVLDYLSDVIH-VVYGE 304 (607)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHCSEEE-EEESC
T ss_pred HHHHHhcCCEEEEEecChHHHHhhCCEEE-EECCC
Confidence 899999999 46678899995 48743
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-30 Score=277.53 Aligned_cols=209 Identities=16% Similarity=0.186 Sum_probs=132.3
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|++++|++.. .++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|+++|. ...
T Consensus 669 ~~mL~v~nLs~~Y~g~~-~~i---L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~~~~-~~I 738 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTS-KPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYTHEN-CRI 738 (986)
T ss_dssp SEEEEEEEEEECCTTCS-SCS---EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEECTT-CCE
T ss_pred CceEEEEeeEEEeCCCC-cee---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEcCc-cce
Confidence 45799999999996422 245 666999999999999999999999999999999999 99999999863 223
Q ss_pred ceEeEeeee--c----CC-----------C----------cceeeeec-------------C--------CCC--cc---
Q 018083 163 TYFLQEYTI--P----RG-----------S----------NSFSLYDT-------------R--------SLS--DD--- 189 (361)
Q Consensus 163 ~~~~~~~~i--~----~~-----------~----------~~~~~~d~-------------r--------~~i--~~--- 189 (361)
+|+.|.... . .. . ..+...+. | ..+ .+
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 333332100 0 00 0 00000000 0 000 00
Q ss_pred ----cccchHHH-----HHHHHhccccceeE------------------EecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 190 ----ASDNINMI-----KLWIMEGVRHGELV------------------IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 190 ----v~q~~~l~-----~~ti~~ni~~~~~~------------------~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
+.+|..+. ..++.+|+.++... .....+...++++.++++.+||....
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~----- 893 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI----- 893 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH-----
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchh-----
Confidence 00000000 00111111110000 00001122345677889999997521
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Ccccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~~ 298 (361)
..++++.+||||||||++||||| ||||++||. +.|||+||| +.+..
T Consensus 894 ----------~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~ 963 (986)
T 2iw3_A 894 ----------VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKN 963 (986)
T ss_dssp ----------HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTT
T ss_pred ----------hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHH
Confidence 14788999999999999999999 999999864 779999999 56778
Q ss_pred ccchhhHhhhhhhhcCCCC
Q 018083 299 LTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~ 317 (361)
+||+++ +|++|+++..|+
T Consensus 964 l~DrVi-vL~~G~Iv~~G~ 981 (986)
T 2iw3_A 964 LTEEVW-AVKDGRMTPSGH 981 (986)
T ss_dssp TCCEEE-CCBTTBCCC---
T ss_pred hCCEEE-EEECCEEEEeCC
Confidence 999996 599999988774
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-30 Score=263.32 Aligned_cols=173 Identities=16% Similarity=0.159 Sum_probs=122.4
Q ss_pred ccc-ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee---------ee
Q 018083 86 TDA-KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV---------TY 155 (361)
Q Consensus 86 lei-~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I---------~i 155 (361)
.++ +||+++|++.. .+ |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++ .+
T Consensus 21 ~~~~~~ls~~yg~~~--~~---l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-----p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNA--FV---LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-----PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEECSTTC--CE---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEECCcc--cc---ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCccCcchhhhHHhh
Confidence 455 69999997532 35 56699 999999999999999999999999999999 999996 34
Q ss_pred cccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH----HHHhccccceeEEecCCChhhhhhhccccccc
Q 018083 156 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL----WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 156 ~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~----ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~ 231 (361)
+|.++.. . . .........+++++|....++. ++.+++.. ....+++.++++.+
T Consensus 90 ~g~~~~~-~-~-----------~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----------~~~~~~~~~~l~~l 146 (538)
T 1yqt_A 90 RGNELQN-Y-F-----------EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK----------ADETGKLEEVVKAL 146 (538)
T ss_dssp TTSTHHH-H-H-----------HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH----------HCSSSCHHHHHHHT
T ss_pred CCccHHH-H-H-----------HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh----------hhHHHHHHHHHHHc
Confidence 5544320 0 0 0000011123444554332211 23333321 12235677889999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------Cc
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DK 286 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~ 286 (361)
|+.. .+++++.+||||||||++||||| ||||++||. |+
T Consensus 147 gl~~-----------------~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~ 209 (538)
T 1yqt_A 147 ELEN-----------------VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGK 209 (538)
T ss_dssp TCTT-----------------TTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCh-----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 9987 45899999999999999999999 999999763 89
Q ss_pred cEEEEEc--CccccccchhhHhhhhh
Q 018083 287 PVVVVTH--GDLLSLTDRARIRTYLG 310 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~vvl~~G 310 (361)
|||+||| +.+..+||||+ +|++|
T Consensus 210 tvi~vsHd~~~~~~~~dri~-vl~~~ 234 (538)
T 1yqt_A 210 SVLVVEHDLAVLDYLSDIIH-VVYGE 234 (538)
T ss_dssp EEEEECSCHHHHHHHCSEEE-EEEEE
T ss_pred EEEEEeCCHHHHHHhCCEEE-EEcCc
Confidence 9999999 56778999996 58765
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-29 Score=264.64 Aligned_cols=176 Identities=10% Similarity=0.030 Sum_probs=126.4
Q ss_pred ccceeeecCcceeeccccceeccCCCCCc-----eEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKT-----TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~G-----e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+++++.|+... .+ ++++||++.+| |+++|+||||||||||+++|+|+++ |++|+.. ... ..
T Consensus 350 ~~~~~~y~~~~--~~---l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~~~-~~~--~i- 415 (608)
T 3j16_B 350 ASRAFSYPSLK--KT---QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQDI-PKL--NV- 415 (608)
T ss_dssp SSSCCEECCEE--EE---CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-----CSBCCCC-CSC--CE-
T ss_pred cceeEEecCcc--cc---cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcCc-cCC--cE-
Confidence 67888887542 45 55599999999 7799999999999999999999999 9999731 111 11
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.+..++.... ++ .++.+++..... . .....+.+.++++.+++.+
T Consensus 416 -------------~~~~q~~~~~----~~------~tv~e~~~~~~~---~--~~~~~~~~~~~l~~l~l~~-------- 459 (608)
T 3j16_B 416 -------------SMKPQKIAPK----FP------GTVRQLFFKKIR---G--QFLNPQFQTDVVKPLRIDD-------- 459 (608)
T ss_dssp -------------EEECSSCCCC----CC------SBHHHHHHHHCS---S--TTTSHHHHHHTHHHHTSTT--------
T ss_pred -------------EEeccccccc----CC------ccHHHHHHHHhh---c--ccccHHHHHHHHHHcCChh--------
Confidence 1111111111 00 112222211110 0 0112245667889999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
++++++.+||||||||++||||| ||||++||. |+|||+||| ++
T Consensus 460 ---------~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~ 530 (608)
T 3j16_B 460 ---------IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIM 530 (608)
T ss_dssp ---------TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred ---------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 45999999999999999999999 999999763 899999999 57
Q ss_pred cccccchhhHhhhh--hhhcCCCCccccccC
Q 018083 296 LLSLTDRARIRTYL--GELLGIPPAKQIFDI 324 (361)
Q Consensus 296 ~~~~aDri~vvl~~--G~iv~~g~~~~i~~~ 324 (361)
+..+|||++ +|++ |+++..|+|+++++.
T Consensus 531 ~~~~aDrvi-vl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 531 ATYLADKVI-VFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHCSEEE-ECEEETTTEEECCCCEEHHHH
T ss_pred HHHhCCEEE-EEeCCCCeEEecCChHHHhhh
Confidence 788999996 5886 899999999888764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-28 Score=260.75 Aligned_cols=210 Identities=16% Similarity=0.177 Sum_probs=108.7
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh---------------------hhhhhhhcccccc
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV---------------------NRISKVFENDKFA 147 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl---------------------~~I~gl~~~~~~~ 147 (361)
+++++.|-.+....+ |++|||+|++||+++|+||||||||||+ +++.++..
T Consensus 19 ~~~~~~~~~~~~~~~---L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~----- 90 (670)
T 3ux8_A 19 SHMDKIIVKGARAHN---LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK----- 90 (670)
T ss_dssp ---CEEEEEEECSTT---CCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-------------------
T ss_pred CCcceEEEcCCCccc---eeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-----
Confidence 445544422222356 5559999999999999999999999998 78888887
Q ss_pred ccccee-------eecccccCcceEeEeeeecCCCccee-eeecCCCCcccccc--hHHHHH-HHHhccccceeEE-ecC
Q 018083 148 SERAQV-------TYNSSVGDGTYFLQEYTIPRGSNSFS-LYDTRSLSDDASDN--INMIKL-WIMEGVRHGELVI-RRS 215 (361)
Q Consensus 148 p~~G~I-------~i~G~~i~~~~~~~~~~i~~~~~~~~-~~d~r~~i~~v~q~--~~l~~~-ti~~ni~~~~~~~-~~~ 215 (361)
|+.|.| .+++.+... .....+...+.... +......+++++|. ...+.. ++.+|+.+..... ...
T Consensus 91 ~~~~~i~~~~~~i~~~~~~~~~---~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~ 167 (670)
T 3ux8_A 91 PDVDAIEGLSPAISIDQKTTSR---NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK 167 (670)
T ss_dssp CCCSEEESCCCEEEESSCC--------CCBHHHHTTCC-------------------------CC---------------
T ss_pred CCccceeccccceEecCchhhc---cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh
Confidence 774444 444433210 00000000000000 00011112222222 222222 5677776532110 000
Q ss_pred CChhhhhh------hcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-----------CCC
Q 018083 216 DSSSLRNR------MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCP 278 (361)
Q Consensus 216 ~~~~~~~~------v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEP 278 (361)
........ ...+++.+||.+. .+++++.+||||||||++||||| |||
T Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~gL~~~----------------~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEP 231 (670)
T 3ux8_A 168 EAQIARLILREIRDRLGFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEP 231 (670)
T ss_dssp -----------CHHHHHHHHHTTCTTC----------------CTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECT
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCchh----------------hhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECC
Confidence 00001111 1124777888752 24889999999999999999998 999
Q ss_pred ceeecC----------------CccEEEEEcC-ccccccchhhHhh------hhhhhcCCCCccccccCCC
Q 018083 279 YLSFRD----------------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 279 t~~L~~----------------g~tvIiiTH~-~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~~ 326 (361)
|++||. |+|||+|||+ .....|||++ +| ++|++++.|++++++..+.
T Consensus 232 tsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii-~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 232 SIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLI-DIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp TTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEE-EECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEE-EecccccccCCEEEEecCHHHHhcCch
Confidence 999864 8999999993 3445699996 58 8999999999998877653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-28 Score=249.51 Aligned_cols=174 Identities=11% Similarity=0.009 Sum_probs=135.1
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc-e-eeecccc
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-Q-VTYNSSV 159 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G-~-I~i~G~~ 159 (361)
..++++++||++.|+ + +||++++|++++|+||||||||||+|+|+|++. |++| + |+++|.
T Consensus 115 ~~~mi~~~nl~~~y~---------~---vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-----p~~G~~pI~vdg~- 176 (460)
T 2npi_A 115 NHTMKYIYNLHFMLE---------K---IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-----KFNAYQPLYINLD- 176 (460)
T ss_dssp CCTHHHHHHHHHHHH---------H---HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-----HHHCCCCEEEECC-
T ss_pred Ccchhhhhhhhehhh---------c---CceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-----ccCCceeEEEcCC-
Confidence 356899999999985 2 999999999999999999999999999999999 9999 9 999871
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHH----HHHHhccccceeEEecCCChhhhhhhcccccccCCCc
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK----LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 235 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~----~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~ 235 (361)
.+..+++++|+..+++ .++.+|+ ++...... ....+++.++++.+|+.+
T Consensus 177 -----------------------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~---~~~~~~~~~ll~~~gl~~ 229 (460)
T 2npi_A 177 -----------------------PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSG---ATLLHNKQPMVKNFGLER 229 (460)
T ss_dssp -----------------------TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSS---CCSSCCBCCEECCCCSSS
T ss_pred -----------------------ccCCeeeeccchhhcccccccchhhhh-cccccccC---cchHHHHHHHHHHhCCCc
Confidence 1234566666654322 1455666 54331111 122456778899999987
Q ss_pred ceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhc--c-------------CC-CceeecC------------Ccc
Q 018083 236 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT--F-------------NC-PYLSFRD------------DKP 287 (361)
Q Consensus 236 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArA--L-------------DE-Pt~~L~~------------g~t 287 (361)
..+ +.+||||||||++|||| | || |+++||. ++|
T Consensus 230 -----------------~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~t 290 (460)
T 2npi_A 230 -----------------INE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVN 290 (460)
T ss_dssp -----------------GGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCC
T ss_pred -----------------ccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCC
Confidence 334 88999999999999999 3 99 9999753 889
Q ss_pred EEEEEc--C------ccccccch-----hhHhhh-hhhhcCCCCcccc
Q 018083 288 VVVVTH--G------DLLSLTDR-----ARIRTY-LGELLGIPPAKQI 321 (361)
Q Consensus 288 vIiiTH--~------~~~~~aDr-----i~vvl~-~G~iv~~g~~~~i 321 (361)
+|+||| . ++..+||| |+ +|+ +|+++ .++++++
T Consensus 291 viiVth~~~~~l~~~~~~~~~dr~~~~~vi-~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 291 IMLVLCSETDPLWEKVKKTFGPELGNNNIF-FIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp EEEEECCSSCTHHHHHHHHHHHHHCGGGEE-EECCCTTCC-CCCHHHH
T ss_pred EEEEEccCchhhhHHHHHHhcccccCCEEE-EEeCCCcEE-ECCHHHH
Confidence 999999 4 44589999 85 598 99999 8877654
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-27 Score=247.26 Aligned_cols=175 Identities=16% Similarity=0.122 Sum_probs=118.7
Q ss_pred ccceeeecCcceeeccccceeccCCCC-CceEEEEEccCCCCcchhhhhhhhhhccccccccccee-----------eec
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-----------TYN 156 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~-~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I-----------~i~ 156 (361)
++.+.+|+.+. ++...|.++ +||++||+||||||||||+|+|+|+++ |++|+| .++
T Consensus 3 ~~~~~~~~~~~-------f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i~~~~~~~~~~~~~~ 70 (538)
T 3ozx_A 3 GEVIHRYKVNG-------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDPNSKVGKDEVLKRFR 70 (538)
T ss_dssp CCEEEESSTTS-------CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCTTSCCCHHHHHHHHT
T ss_pred CCCceecCCCc-------eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCccccccchhhHHhhcC
Confidence 45678898764 555667555 899999999999999999999999999 999998 566
Q ss_pred ccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcc
Q 018083 157 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 157 G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
|.++.. ++... ... .... ...+.++.+.+.++..++.+++. ....++++.++++.+++..
T Consensus 71 g~~i~~-~~~~~--~~~---~~~~---~~~~~~~~~~~~~~~~~v~~~l~----------~~~~~~~~~~~l~~l~l~~- 130 (538)
T 3ozx_A 71 GKEIYN-YFKEL--YSN---ELKI---VHKIQYVEYASKFLKGTVNEILT----------KIDERGKKDEVKELLNMTN- 130 (538)
T ss_dssp TSTTHH-HHHHH--HTT---CCCE---EEECSCTTGGGTTCCSBHHHHHH----------HHCCSSCHHHHHHHTTCGG-
T ss_pred CeeHHH-HHHHH--hhc---ccch---hhccchhhhhhhhccCcHHHHhh----------cchhHHHHHHHHHHcCCch-
Confidence 665421 00000 000 0000 00122222222211112222211 1122346677889999987
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVT 292 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiT 292 (361)
.+++++.+||||||||++||||| ||||++||. |+|||+||
T Consensus 131 ----------------~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vs 194 (538)
T 3ozx_A 131 ----------------LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVD 194 (538)
T ss_dssp ----------------GTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred ----------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 45899999999999999999999 999999753 89999999
Q ss_pred c--CccccccchhhHhhhhhhh
Q 018083 293 H--GDLLSLTDRARIRTYLGEL 312 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~i 312 (361)
| +.+..+||+|. +|++|..
T Consensus 195 Hdl~~~~~~~d~i~-vl~~~~~ 215 (538)
T 3ozx_A 195 HDLIVLDYLTDLIH-IIYGESS 215 (538)
T ss_dssp SCHHHHHHHCSEEE-EEEEETT
T ss_pred eChHHHHhhCCEEE-EecCCcc
Confidence 9 57778999996 4876543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-27 Score=250.67 Aligned_cols=171 Identities=14% Similarity=0.069 Sum_probs=115.4
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee-----------ecc
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 157 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~-----------i~G 157 (361)
++++++|+.... + |++++ .+++||+++|+||||||||||+|+|+|+++ |++|+|. +.|
T Consensus 81 ~~~~~~Y~~~~~--~---l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i~~~~~~~~~~~~~~g 149 (608)
T 3j16_B 81 AHVTHRYSANSF--K---LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRFDDPPEWQEIIKYFRG 149 (608)
T ss_dssp TTEEEECSTTSC--E---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSSCHHHHHHHTTT
T ss_pred CCeEEEECCCce--e---ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceEecccchhhhhheecC
Confidence 467888876532 3 44466 699999999999999999999999999999 9999983 333
Q ss_pred cccCcceEeEeeeecCCCcceeeeecCCCCc--ccccchHHHHH-------HHHhccccceeEEecCCChhhhhhhcccc
Q 018083 158 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD--DASDNINMIKL-------WIMEGVRHGELVIRRSDSSSLRNRMRCKA 228 (361)
Q Consensus 158 ~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~--~v~q~~~l~~~-------ti~~ni~~~~~~~~~~~~~~~~~~v~~~l 228 (361)
.++.. +........+. +.+|....++. ++.+++.. ......+++.+++
T Consensus 150 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~--------~~~~~~~~~~~~l 206 (608)
T 3j16_B 150 SELQN---------------YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL--------RMEKSPEDVKRYI 206 (608)
T ss_dssp STHHH---------------HHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH--------HCCSCHHHHHHHH
T ss_pred hhhhh---------------hhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh--------hhhhHHHHHHHHH
Confidence 22210 00000000000 01111111111 11111110 0122345678889
Q ss_pred cccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------
Q 018083 229 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------------- 284 (361)
Q Consensus 229 ~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--------------- 284 (361)
+.+++.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 207 ~~~gl~~-----------------~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~ 269 (608)
T 3j16_B 207 KILQLEN-----------------VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA 269 (608)
T ss_dssp HHHTCTG-----------------GGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT
T ss_pred HHcCCcc-----------------hhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh
Confidence 9999987 46999999999999999999999 999999753
Q ss_pred -CccEEEEEc--CccccccchhhHhhhhhh
Q 018083 285 -DKPVVVVTH--GDLLSLTDRARIRTYLGE 311 (361)
Q Consensus 285 -g~tvIiiTH--~~~~~~aDri~vvl~~G~ 311 (361)
|+|||+||| +.+..+||||+ +|+.|.
T Consensus 270 ~g~tvi~vtHdl~~~~~~~drv~-vl~~~~ 298 (608)
T 3j16_B 270 PTKYVICVEHDLSVLDYLSDFVC-IIYGVP 298 (608)
T ss_dssp TTCEEEEECSCHHHHHHHCSEEE-EEESCT
T ss_pred CCCEEEEEeCCHHHHHHhCCEEE-EEeCCc
Confidence 899999999 57778999996 587654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-27 Score=247.24 Aligned_cols=87 Identities=13% Similarity=0.159 Sum_probs=71.7
Q ss_pred hhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC-----
Q 018083 222 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 284 (361)
Q Consensus 222 ~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~----- 284 (361)
+++.+++..+++... .+++++.+||||||||++||||| ||||++||.
T Consensus 521 ~~~~~~l~~~~l~~~----------------~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~ 584 (670)
T 3ux8_A 521 KRKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIAR 584 (670)
T ss_dssp HHHHHHHHHTTCTTS----------------BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCchh----------------hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHH
Confidence 345567778888642 24889999999999999999997 999999753
Q ss_pred -----------CccEEEEEcC-ccccccchhhHhh------hhhhhcCCCCccccccCC
Q 018083 285 -----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 -----------g~tvIiiTH~-~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~ 325 (361)
|+|||+|||+ .....||||+ +| ++|+|++.|+++++...+
T Consensus 585 i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~-~l~~~~g~~~G~i~~~g~~~~~~~~~ 642 (670)
T 3ux8_A 585 LLDVLHRLVDNGDTVLVIEHNLDVIKTADYII-DLGPEGGDRGGQIVAVGTPEEVAEVK 642 (670)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE-EEESSSGGGCCEEEEEECHHHHHTCT
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEE-EecCCcCCCCCEEEEecCHHHHHhCC
Confidence 8999999993 3446799995 59 899999999999997654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-27 Score=254.62 Aligned_cols=174 Identities=12% Similarity=0.066 Sum_probs=126.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.|...|++++|++. .+ |+++||+|++|++++|+||||||||||+|+|+| |+| +|.+...
T Consensus 435 ~L~~~~ls~~yg~~---~i---L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----------G~i--~g~~~~~-- 493 (986)
T 2iw3_A 435 DLCNCEFSLAYGAK---IL---LNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----------GQV--DGFPTQE-- 493 (986)
T ss_dssp EEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----------TCS--TTCCCTT--
T ss_pred eeEEeeEEEEECCE---Ee---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----------CCc--CCCcccc--
Confidence 36666899999753 45 666999999999999999999999999999995 222 2222110
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccch-HHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNI-NMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~-~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. ..+++++|++ .+++. ++.+++.+.. .. . ++++.++++.+|+...
T Consensus 494 ------------~-------~~~~~v~q~~~~~~~~ltv~e~l~~~~-----~~--~-~~~v~~~L~~lgL~~~------ 540 (986)
T 2iw3_A 494 ------------E-------CRTVYVEHDIDGTHSDTSVLDFVFESG-----VG--T-KEAIKDKLIEFGFTDE------ 540 (986)
T ss_dssp ------------T-------SCEEETTCCCCCCCTTSBHHHHHHTTC-----SS--C-HHHHHHHHHHTTCCHH------
T ss_pred ------------c-------eeEEEEcccccccccCCcHHHHHHHhh-----cC--H-HHHHHHHHHHcCCChh------
Confidence 0 0012333332 11112 4555655310 01 1 5678888999999532
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Ccccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~~ 298 (361)
.+++++.+||||||||++||||| ||||++||. |.|||+||| +.+..
T Consensus 541 ----------~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 541 ----------MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDN 610 (986)
T ss_dssp ----------HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHH
T ss_pred ----------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 45899999999999999999999 999999763 899999999 56778
Q ss_pred ccchhhHhhhhhhhc-CCCCcccccc
Q 018083 299 LTDRARIRTYLGELL-GIPPAKQIFD 323 (361)
Q Consensus 299 ~aDri~vvl~~G~iv-~~g~~~~i~~ 323 (361)
+||+++ +|++|+++ ..|++++++.
T Consensus 611 ~adrii-~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 611 VCEYII-NYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HCSEEE-EEETTEEEEEESCHHHHHH
T ss_pred hCCEEE-EEECCeeecCCCCHHHHHh
Confidence 999996 59999996 5788777653
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-25 Score=213.34 Aligned_cols=186 Identities=13% Similarity=0.053 Sum_probs=125.3
Q ss_pred chhhhhhhhhhhH--HHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEcc
Q 018083 54 SWDSLVDQRRRDA--VFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 125 (361)
Q Consensus 54 ~~~~~~~~~~~~~--~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGp 125 (361)
++.....++...+ |+.+++..+++.... ....|+++||++.|+ . ++ |+++||+|++|++++|+||
T Consensus 62 ~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~-~---~v---L~~vsl~i~~Ge~vaIvGp 134 (305)
T 2v9p_A 62 ATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF-I---NA---LKLWLKGIPKKNCLAFIGP 134 (305)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH-H---HH---HHHHHHTCTTCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC-h---hh---hccceEEecCCCEEEEECC
Confidence 3333444444433 888988766543211 123589999999996 2 45 6669999999999999999
Q ss_pred CCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHh-c
Q 018083 126 KGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIME-G 204 (361)
Q Consensus 126 nGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~-n 204 (361)
||||||||+++|+|++. |+|... ++|++.++..++.+ |
T Consensus 135 sGsGKSTLl~lL~gl~~--------G~I~~~---------------------------------v~q~~~lf~~ti~~~n 173 (305)
T 2v9p_A 135 PNTGKSMLCNSLIHFLG--------GSVLSF---------------------------------ANHKSHFWLASLADTR 173 (305)
T ss_dssp SSSSHHHHHHHHHHHHT--------CEEECG---------------------------------GGTTSGGGGGGGTTCS
T ss_pred CCCcHHHHHHHHhhhcC--------ceEEEE---------------------------------ecCccccccccHHHHh
Confidence 99999999999999983 777432 34455555556665 7
Q ss_pred cccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc--CCC---c
Q 018083 205 VRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--NCP---Y 279 (361)
Q Consensus 205 i~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL--DEP---t 279 (361)
|.++... .. .+.+.++.+ +.. .++ +..|||||||| |||| +.| |
T Consensus 174 i~~~~~~-----~~----~~~~~i~~~-L~~-----------------gld--g~~LSgGqkQR---ARAll~~p~iLlT 221 (305)
T 2v9p_A 174 AALVDDA-----TH----ACWRYFDTY-LRN-----------------ALD--GYPVSIDRKHK---AAVQIKAPPLLVT 221 (305)
T ss_dssp CEEEEEE-----CH----HHHHHHHHT-TTG-----------------GGG--TCCEECCCSSC---CCCEECCCCEEEE
T ss_pred hccCccc-----cH----HHHHHHHHH-hHc-----------------cCC--ccCcCHHHHHH---HHHHhCCCCEEEE
Confidence 7764221 11 222333332 333 123 77999999999 9998 555 7
Q ss_pred eeecC--CccEEEEEc-CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 280 LSFRD--DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 280 ~~L~~--g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
++||. ...+..+|| ......||+| + |++|++++.|+++++
T Consensus 222 s~LD~~~~~~i~~ltH~~~~~~~aD~i-v-l~~G~iv~~g~~~el 264 (305)
T 2v9p_A 222 SNIDVQAEDRYLYLHSRVQTFRFEQPC-T-DESGEQPFNITDADW 264 (305)
T ss_dssp ESSCSTTCGGGGGGTTTEEEEECCCCC-C-CC---CCCCCCHHHH
T ss_pred CCCCHHHHHHHHHHhCCHHHHHhCCEE-E-EeCCEEEEeCCHHHH
Confidence 77774 223344589 4566889999 6 999999999999876
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-25 Score=237.68 Aligned_cols=95 Identities=17% Similarity=0.158 Sum_probs=77.1
Q ss_pred hhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC-----
Q 018083 222 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 284 (361)
Q Consensus 222 ~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~----- 284 (361)
.++.++|+.+||... .+++++.+||||||||++||||| ||||++||.
T Consensus 783 ~~~~~~L~~vGL~~~----------------~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~ 846 (916)
T 3pih_A 783 KRTLQVLHDVGLGYV----------------KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRK 846 (916)
T ss_dssp HHHHHHHHHTTGGGS----------------BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCchh----------------hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 456678889999652 24889999999999999999998 999999752
Q ss_pred -----------CccEEEEEcC-ccccccchhhHhh------hhhhhcCCCCccccccCCCCCCCCchh
Q 018083 285 -----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 285 -----------g~tvIiiTH~-~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
|.|||+|||+ +....||+|+ +| ++|+|++.|++++++..+ .+++..++
T Consensus 847 L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIi-vLgp~gg~~~G~Iv~~Gtpeel~~~~-~syt~~~l 912 (916)
T 3pih_A 847 LVEVLHRLVDRGNTVIVIEHNLDVIKNADHII-DLGPEGGKEGGYIVATGTPEEIAKNP-HSYTGRFL 912 (916)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE-EEESSSGGGCCEEEEEESHHHHHSCT-TCHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE-EecCCCCCCCCEEEEEcCHHHHHhCC-chHHHHHH
Confidence 8999999993 3445699995 59 899999999999999876 34554443
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-24 Score=229.53 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=73.8
Q ss_pred hhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC-----
Q 018083 222 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 284 (361)
Q Consensus 222 ~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~----- 284 (361)
+++.++++.++|... .+++++.+||||||||++||++| ||||++||.
T Consensus 708 ~~~~~~L~~~gL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~ 771 (842)
T 2vf7_A 708 FRALDTLREVGLGYL----------------RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVER 771 (842)
T ss_dssp HHHHHHHHHTTCTTS----------------BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCcc----------------cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 467788999999762 14889999999999999999998 999999742
Q ss_pred -----------CccEEEEEc--CccccccchhhHhh------hhhhhcCCCCccccccCCC
Q 018083 285 -----------DKPVVVVTH--GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 285 -----------g~tvIiiTH--~~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~~ 326 (361)
|.|||+||| +.+ ..||||+ +| ++|+|++.|++++++..+.
T Consensus 772 l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii-~L~p~~g~~~G~Iv~~g~~~el~~~~~ 830 (842)
T 2vf7_A 772 LQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVL-DIGPGAGEDGGRLVAQGTPAEVAQAAG 830 (842)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEE-EECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEE-EECCCCCCCCCEEEEEcCHHHHHhCch
Confidence 899999999 445 7899995 59 7999999999999987654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-23 Score=226.62 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=72.0
Q ss_pred hhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC------
Q 018083 223 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------ 284 (361)
Q Consensus 223 ~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~------ 284 (361)
++.++++.++|... .+++++.+||||||||++||++| ||||++||.
T Consensus 824 ~~~~~L~~~gL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l 887 (972)
T 2r6f_A 824 RKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARL 887 (972)
T ss_dssp HHHHHHHHTTCSSS----------------BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCcc----------------cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHH
Confidence 34567888999752 24889999999999999999998 999999752
Q ss_pred ----------CccEEEEEcC-ccccccchhhHhh------hhhhhcCCCCccccccCCC
Q 018083 285 ----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 285 ----------g~tvIiiTH~-~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~~ 326 (361)
|.|||+|||+ +....||||+ +| ++|++++.|++++++..+.
T Consensus 888 ~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi-vL~p~gG~~~G~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 888 LDVLHRLVDNGDTVLVIEHNLDVIKTADYII-DLGPEGGDRGGQIVAVGTPEEVAEVKE 945 (972)
T ss_dssp HHHHHHHHHTTCEEEEECCCHHHHTTCSEEE-EECSSSTTSCCSEEEEESHHHHHTCTT
T ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE-EEcCCCCCCCCEEEEecCHHHHHhCch
Confidence 8999999993 3346799995 59 7899999999999987543
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-22 Score=200.56 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=33.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++++|++.+| +++|+||||||||||+++|.++..
T Consensus 51 l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred eeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 67799999999 999999999999999999998886
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-21 Score=177.06 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=32.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 154 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~ 154 (361)
++|++++|+||||||||||+++|+|+ + |++|+|.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I~ 53 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQVS 53 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCeee
Confidence 89999999999999999999999999 9 9999994
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-21 Score=195.76 Aligned_cols=185 Identities=11% Similarity=0.049 Sum_probs=126.8
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc---cc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---VG 160 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~---~i 160 (361)
++++++++++.|+.+ +++ |+++ |+|.+|++++|+||||||||||+++|+|+.+ |+.|.|.++|+ ++
T Consensus 130 ~~l~~~~v~~~~~tg--~~v---ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-----~~~G~i~~~G~r~~ev 198 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG--VRA---INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-----ADVIVVGLIGERGREV 198 (438)
T ss_dssp CTTTSCCCCSBCCCS--CHH---HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHHH
T ss_pred CceEEeccceecCCC--ceE---Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEeceecHHH
Confidence 579999999999743 357 4559 9999999999999999999999999999999 99999999997 33
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccc-hHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDN-INMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~-~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.. +... .......+..+++++|+ ...+.. ++.+|+.+.....+ ...+.+
T Consensus 199 ~~--------~~~~--~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~-----~~~~~v-------------- 249 (438)
T 2dpy_A 199 KD--------FIEN--ILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFR-----DRGQHV-------------- 249 (438)
T ss_dssp HH--------HHHT--TTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH-----TTTCEE--------------
T ss_pred HH--------HHHh--hccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHH-----hCCCCH--------------
Confidence 20 0000 00011123456778874 333444 77777764322100 000011
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhccCCC--ceeecC--------------------Cc-----cEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRD--------------------DK-----PVVVV 291 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArALDEP--t~~L~~--------------------g~-----tvIii 291 (361)
..++|. ...||+|| ||++|| +.+| +++++. |. ||+++
T Consensus 250 ------~~~ld~-------l~~lS~g~-qrvslA--l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~ 313 (438)
T 2dpy_A 250 ------LLIMDS-------LTRYAMAQ-REIALA--IGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTE 313 (438)
T ss_dssp ------EEEEEC-------HHHHHHHH-HHHHHH--TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECS
T ss_pred ------HHHHHh-------HHHHHHHH-HHHHHH--hCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEe
Confidence 111121 34689999 999999 6555 565321 42 89999
Q ss_pred EcCccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 292 THGDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 292 TH~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
||+.-..+||++. +|.+|+++..+++.++...|
T Consensus 314 tHdl~~~iad~v~-~l~dG~Ivl~~~~~~~~~~P 346 (438)
T 2dpy_A 314 GDDQQDPIADSAR-AILDGHIVLSRRLAEAGHYP 346 (438)
T ss_dssp SSCSCCHHHHHHH-HHSSEEEEECHHHHHTTCSS
T ss_pred CCCccchhhceEE-EEeCcEEEEeCCHHHccCCC
Confidence 9954478899995 59999999999988876654
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-20 Score=178.92 Aligned_cols=153 Identities=10% Similarity=0.078 Sum_probs=110.5
Q ss_pred eeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCC
Q 018083 108 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS 187 (361)
Q Consensus 108 ~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i 187 (361)
..+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..... +. ....+..+..+
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~g~V~l~g~d~~r~~a-----~~----ql~~~~~~~~i 156 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAA-----SD----QLEIWAERTGC 156 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHH-----HH----HHHHHHHHHTC
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeecccchhH-----HH----HHHHHHHhcCc
Confidence 34999999999999999999999999999999999 999999999988641000 00 00011112347
Q ss_pred cccccchH-HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhh
Q 018083 188 DDASDNIN-MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 265 (361)
Q Consensus 188 ~~v~q~~~-l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 265 (361)
++++|++. +++. ++.+++.++.. . .....+++.+|+.+ ..++++.+||
T Consensus 157 ~~v~q~~~~~~~~~~v~e~l~~~~~---~-------~~d~~lldt~gl~~-----------------~~~~~~~eLS--- 206 (302)
T 3b9q_A 157 EIVVAEGDKAKAATVLSKAVKRGKE---E-------GYDVVLCDTSGRLH-----------------TNYSLMEELI--- 206 (302)
T ss_dssp EEECCC--CCCHHHHHHHHHHHHHH---T-------TCSEEEECCCCCSS-----------------CCHHHHHHHH---
T ss_pred eEEEecCCccCHHHHHHHHHHHHHH---c-------CCcchHHhcCCCCc-----------------chhHHHHHHH---
Confidence 78888876 5555 78888875432 0 01134677888876 3378889999
Q ss_pred hhhhhhhhcc-----------CCCceeecC-----------CccEEEEEc-CccccccchhhH
Q 018083 266 QYNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-GDLLSLTDRARI 305 (361)
Q Consensus 266 rQRvaIArAL-----------DEPt~~L~~-----------g~tvIiiTH-~~~~~~aDri~v 305 (361)
+||++||||| | ||++++. +.|+|++|| +...+.+.-+.+
T Consensus 207 kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 207 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 9999999998 7 8888653 899999999 666666655544
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-20 Score=179.97 Aligned_cols=59 Identities=14% Similarity=0.022 Sum_probs=46.9
Q ss_pred hhhhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cccccccchh
Q 018083 253 VLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 253 ~~~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri 303 (361)
..+.++.+||+|||||++||+|| ||||++||+ +.|||++|| ..+..+||++
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~ 291 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLL 291 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEE
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceE
Confidence 34667889999999999999974 999999753 789999999 5667889986
Q ss_pred -hHhhhhhh
Q 018083 304 -RIRTYLGE 311 (361)
Q Consensus 304 -~vvl~~G~ 311 (361)
.++|.+|.
T Consensus 292 ~~v~~~~g~ 300 (322)
T 1e69_A 292 HGVTMVNGV 300 (322)
T ss_dssp EEEEESSSC
T ss_pred EEEEEeCCE
Confidence 12366664
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.9e-21 Score=194.52 Aligned_cols=171 Identities=8% Similarity=-0.049 Sum_probs=116.3
Q ss_pred cccccccceeeecCcceeeccccceeccC-CCCCceEEEEEccCCCCcchhhhh--hhhhhcccccccccceeeeccccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~-~I~~Ge~vaLvGpnGSGKSTLl~~--I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
++++.+++.+.+ .+ +++ |++++| .|++|++++|+||||||||||+++ ++|+++ |++|.|+++|.+.
T Consensus 11 ~~~~~~~~~~~~-~g--~~~---Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 11 NNSEHQAIAKMR-TM--IEG---FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEET 79 (525)
T ss_dssp ---CCSSCCEEC-CC--CTT---HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSC
T ss_pred CCcccccccccc-CC--chh---HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeCC
Confidence 357777775543 33 467 555999 999999999999999999999999 789999 8999999999773
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. ..+...+..+++++|++... +++.+. .. .. .++..++++.+++.+
T Consensus 80 ~----------------~~~~~~~~~~g~~~q~~~~~-----~~l~~~----~~-~~---~~~~~~~l~~~~l~~----- 125 (525)
T 1tf7_A 80 P----------------QDIIKNARSFGWDLAKLVDE-----GKLFIL----DA-SP---DPEGQEVVGGFDLSA----- 125 (525)
T ss_dssp H----------------HHHHHHHGGGTCCHHHHHHT-----TSEEEE----EC-CC---CSSCCSCCSSHHHHH-----
T ss_pred H----------------HHHHHHHHHcCCChHHhhcc-----CcEEEE----ec-Cc---ccchhhhhcccCHHH-----
Confidence 2 11222334568889986531 233211 11 11 123445677777766
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-CCCceeec----------------CCccEEEEEc--Ccc-----
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-NCPYLSFR----------------DDKPVVVVTH--GDL----- 296 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-DEPt~~L~----------------~g~tvIiiTH--~~~----- 296 (361)
++++.+.+||+||+||+.|+.++ -.|.++++ .|+|||++|| +.+
T Consensus 126 ------------~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~ 193 (525)
T 1tf7_A 126 ------------LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIAR 193 (525)
T ss_dssp ------------HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSST
T ss_pred ------------HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCcccccc
Confidence 56899999999999999775543 12222221 2899999999 343
Q ss_pred ----ccccchhhHhhhhhhh
Q 018083 297 ----LSLTDRARIRTYLGEL 312 (361)
Q Consensus 297 ----~~~aDri~vvl~~G~i 312 (361)
..+||+++ +|++|++
T Consensus 194 ~~i~~~laD~vi-~L~~~~~ 212 (525)
T 1tf7_A 194 YGVEEFVSDNVV-ILRNVLE 212 (525)
T ss_dssp TSCHHHHCSEEE-EEEEECS
T ss_pred ccceeeeeeEEE-EEEEEcc
Confidence 34599995 5998654
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-21 Score=187.14 Aligned_cols=161 Identities=12% Similarity=-0.076 Sum_probs=109.5
Q ss_pred cccccccceeeecCcceeeccccceeccC-----------------------CCCCceEEEEEccCCCCcchhhhhhhhh
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDY-----------------------DVPKTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~-----------------------~I~~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
..|++++|++.|.+ + ++++++ ++++|++++|+||||||||||+++|+|+
T Consensus 42 ~~i~~~~v~~~y~p-----~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 42 EQIDLLEVEEVYLP-----L---ARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCCHHHHHHTHHH-----H---HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEeeehhhhhhh-----H---HHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 46999999999953 2 333444 2899999999999999999999999999
Q ss_pred hcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhh
Q 018083 141 FENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 220 (361)
Q Consensus 141 ~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~ 220 (361)
++ |+.|. ..+++|+|+..+++.++.+|+.+... ...+....
T Consensus 114 l~-----~~~G~--------------------------------~~v~~v~qd~~~~~~t~~e~~~~~~~--~g~~~~~d 154 (312)
T 3aez_A 114 LA-----RWDHH--------------------------------PRVDLVTTDGFLYPNAELQRRNLMHR--KGFPESYN 154 (312)
T ss_dssp HH-----TSTTC--------------------------------CCEEEEEGGGGBCCHHHHHHTTCTTC--TTSGGGBC
T ss_pred cc-----ccCCC--------------------------------CeEEEEecCccCCcccHHHHHHHHHh--cCCChHHH
Confidence 99 76542 12445677766666677788764211 11122233
Q ss_pred hhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec---C----
Q 018083 221 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR---D---- 284 (361)
Q Consensus 221 ~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~---~---- 284 (361)
.+.+.++++.++ ... .+.++..|||||+||+++|+|+ |||++.++ .
T Consensus 155 ~~~~~~~L~~l~-~~~-----------------~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~ 216 (312)
T 3aez_A 155 RRALMRFVTSVK-SGS-----------------DYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSD 216 (312)
T ss_dssp HHHHHHHHHHHH-TTC-----------------SCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGG
T ss_pred HHHHHHHHHHhC-CCc-----------------ccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHH
Confidence 455666677766 331 2456779999999999999998 99988763 1
Q ss_pred --CccEEEEEc--Cc-cccccchhhHhhhhhh
Q 018083 285 --DKPVVVVTH--GD-LLSLTDRARIRTYLGE 311 (361)
Q Consensus 285 --g~tvIiiTH--~~-~~~~aDri~vvl~~G~ 311 (361)
+.+ |+|+| +. ...+.+|.. .+.+++
T Consensus 217 ~~D~~-I~V~a~~~~~~~R~i~R~~-~~rd~~ 246 (312)
T 3aez_A 217 LFDFS-LYVDARIEDIEQWYVSRFL-AMRTTA 246 (312)
T ss_dssp GCSEE-EEEEECHHHHHHHHHHHHH-HHTTTG
T ss_pred hcCcE-EEEECCHHHHHHHHHHHHH-HHHhcc
Confidence 444 56666 22 235567773 355554
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-20 Score=160.79 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=27.8
Q ss_pred eccCCCCCceEEEEEccCCCCcchhhhhhh
Q 018083 109 LSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 109 ~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~ 138 (361)
++||+|++||+++|+||||||||||++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 489999999999999999999999999743
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-19 Score=165.82 Aligned_cols=128 Identities=12% Similarity=0.086 Sum_probs=75.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|++|||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++... ......+..
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~------p--G~i~~-g~~~~~~--------------~~~~~~~~~ 69 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF------P--NYFYF-SVSCTTR--------------KKREKEKEG 69 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS------T--TTEEE-CCCEECS--------------CCCSSCCBT
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC------C--CcEEE-eecccCC--------------CCCcccccC
Confidence 67799999999999999999999999999999977 4 88988 7654310 000112346
Q ss_pred CcccccchHHHHHHH--Hhcccccee--EEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCch
Q 018083 187 SDDASDNINMIKLWI--MEGVRHGEL--VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 262 (361)
Q Consensus 187 i~~v~q~~~l~~~ti--~~ni~~~~~--~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LS 262 (361)
++|++|++.+|+..+ .+++.++.. ..... ..+.+.++++...+ +++| .+||
T Consensus 70 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~----~~~~i~~~l~~~~~------------~il~---------~~ls 124 (218)
T 1z6g_A 70 VDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGT----LKSEYDKAKEQNKI------------CLFE---------MNIN 124 (218)
T ss_dssp TTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE----EHHHHHHHHHTTCE------------EEEE---------ECHH
T ss_pred CeEEECCHHHHHHhhhccchhhhhhcccccCCC----cHHHHHHHHhCCCc------------EEEE---------ecHH
Confidence 788999998887642 223322111 01111 11234444443221 1111 4799
Q ss_pred hhhhhhhhh-----hhcc---------CCCceee
Q 018083 263 VEKQYNQIV-----ATTF---------NCPYLSF 282 (361)
Q Consensus 263 GGqrQRvaI-----ArAL---------DEPt~~L 282 (361)
|||+||++| ||+| |||++++
T Consensus 125 ggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~ 158 (218)
T 1z6g_A 125 GVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTR 158 (218)
T ss_dssp HHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhc
Confidence 999999999 7777 6777664
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-19 Score=176.49 Aligned_cols=152 Identities=9% Similarity=0.073 Sum_probs=111.1
Q ss_pred eccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCc
Q 018083 109 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 188 (361)
Q Consensus 109 ~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~ 188 (361)
.+||++++|++++|+||||||||||++.|+|+++ |++|+|.++|.++..... +. ....+..+..++
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~G~V~l~g~D~~r~~a-----~e----ql~~~~~r~~i~ 214 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAA-----SD----QLEIWAERTGCE 214 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHH-----HH----HHHHHHHHHTCE
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-----ccCCEEEEecccccccch-----hH----HHHHHHHhcCeE
Confidence 4899999999999999999999999999999999 999999999988641000 00 000111123467
Q ss_pred ccccchH-HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhh
Q 018083 189 DASDNIN-MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 266 (361)
Q Consensus 189 ~v~q~~~-l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 266 (361)
+++|+.. +++. ++.+++.++.. . ..-..+++.+|+.+ ..++++.+|| +
T Consensus 215 ~v~q~~~~~~p~~tv~e~l~~~~~---~-------~~d~~lldt~Gl~~-----------------~~~~~~~eLS---k 264 (359)
T 2og2_A 215 IVVAEGDKAKAATVLSKAVKRGKE---E-------GYDVVLCDTSGRLH-----------------TNYSLMEELI---A 264 (359)
T ss_dssp EECCSSSSCCHHHHHHHHHHHHHH---T-------TCSEEEEECCCCSS-----------------CCHHHHHHHH---H
T ss_pred EEEecccccChhhhHHHHHHHHHh---C-------CCHHHHHHhcCCCh-----------------hhhhHHHHHH---H
Confidence 7888765 4444 78888875432 0 01124677788876 3378889999 9
Q ss_pred hhhhhhhcc-----------CCCceeecC-----------CccEEEEEc-CccccccchhhH
Q 018083 267 YNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-GDLLSLTDRARI 305 (361)
Q Consensus 267 QRvaIArAL-----------DEPt~~L~~-----------g~tvIiiTH-~~~~~~aDri~v 305 (361)
||++||||| | ||++++. +.|+|++|| +...+....+.+
T Consensus 265 qr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi 325 (359)
T 2og2_A 265 CKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSV 325 (359)
T ss_dssp HHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHH
Confidence 999999988 7 8888653 899999999 766676666654
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.9e-20 Score=164.83 Aligned_cols=151 Identities=11% Similarity=0.028 Sum_probs=90.7
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
+.+ .+|++|++++|+||||||||||+|+|+|+++ ...+.+.+.+.+.. ...+..
T Consensus 12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-----~i~~~~~~~~~~~~-------------------~~~~~~ 65 (207)
T 1znw_A 12 ARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-----NLHFSVSATTRAPR-------------------PGEVDG 65 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHST-----TCEECCCEESSCCC-------------------TTCCBT
T ss_pred CCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-----ceEEcccccccCCc-------------------ccccCC
Confidence 555 6999999999999999999999999999986 32222221111100 012345
Q ss_pred CcccccchHHHHH-HHHhccccceeE-----EecCCChhhhhhhccc------ccccCCCcceeEEEEEEEEEEechhhh
Q 018083 187 SDDASDNINMIKL-WIMEGVRHGELV-----IRRSDSSSLRNRMRCK------AHKIGCEPSVIRKVNFVIFVVDGLAVL 254 (361)
Q Consensus 187 i~~v~q~~~l~~~-ti~~ni~~~~~~-----~~~~~~~~~~~~v~~~------l~~~gl~~~~~~~~~~~~~vv~~~~~~ 254 (361)
++|+||++.+++. ++.+++...... ....+..+.++++.+. ++.+++.. ++
T Consensus 66 i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------------~~ 128 (207)
T 1znw_A 66 VDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARA-----------------IK 128 (207)
T ss_dssp TTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHH-----------------HH
T ss_pred CeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHH-----------------HH
Confidence 7899999988876 666776432211 1112223344445444 55556644 45
Q ss_pred hhccCCchhhhhhhhhhhh-----ccCCCceeec---------------------CCccEEEEEc--CccccccchhhHh
Q 018083 255 KSMEGDSDVEKQYNQIVAT-----TFNCPYLSFR---------------------DDKPVVVVTH--GDLLSLTDRARIR 306 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIAr-----ALDEPt~~L~---------------------~g~tvIiiTH--~~~~~~aDri~vv 306 (361)
++++.+|| +++. .||||+++++ .+.|+|+||| +++..+||||++
T Consensus 129 ~~~~~~lS-------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~- 200 (207)
T 1znw_A 129 KTMPEAVT-------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLV- 200 (207)
T ss_dssp HHCTTSEE-------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred HhcCCcEE-------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHH-
Confidence 77888888 2221 1288877641 2789999999 578899999954
Q ss_pred hh
Q 018083 307 TY 308 (361)
Q Consensus 307 l~ 308 (361)
|.
T Consensus 201 l~ 202 (207)
T 1znw_A 201 GT 202 (207)
T ss_dssp --
T ss_pred hc
Confidence 63
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-20 Score=174.17 Aligned_cols=127 Identities=13% Similarity=0.100 Sum_probs=77.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHH
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK 198 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~ 198 (361)
.++|+||||||||||+|+|+|+.. |++|+|.++|.++.. ...+..+++++|+..+++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-----~~~G~i~~~g~~i~~------------------~~~~~~i~~v~q~~~~~~ 60 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-----SRKASSWNREEKIPK------------------TVEIKAIGHVIEEGGVKM 60 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------CCC------------------CCSCCEEEESCC----CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----CCCCccccCCcccCc------------------ceeeeeeEEEeecCCCcC
Confidence 589999999999999999999999 999999999977631 012344677888876655
Q ss_pred H-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc--
Q 018083 199 L-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-- 275 (361)
Q Consensus 199 ~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-- 275 (361)
. ++.+|+.++.... .....+.+.+++. .. +.+.++.+||||||||++||||+
T Consensus 61 ~ltv~d~~~~g~~~~----~~~~~~~i~~~~~----~~-----------------~~~~~~~~LS~G~~qrv~iaRal~~ 115 (270)
T 3sop_A 61 KLTVIDTPGFGDQIN----NENCWEPIEKYIN----EQ-----------------YEKFLKEEVNIARKKRIPDTRVHCC 115 (270)
T ss_dssp EEEEECCCC--CCSB----CTTCSHHHHHHHH----HH-----------------HHHHHHHHSCTTCCSSCCCCSCCEE
T ss_pred CceEEechhhhhhcc----cHHHHHHHHHHHH----HH-----------------HHhhhHHhcCcccchhhhhheeeee
Confidence 5 7788888765421 1111222222222 22 45778889999999999999997
Q ss_pred ----CCCceeec-----------CCccEEEEEc
Q 018083 276 ----NCPYLSFR-----------DDKPVVVVTH 293 (361)
Q Consensus 276 ----DEPt~~L~-----------~g~tvIiiTH 293 (361)
|||+.+++ ...+||+|.|
T Consensus 116 lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~ 148 (270)
T 3sop_A 116 LYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIA 148 (270)
T ss_dssp EEEECCCSSSCCHHHHHHHHHHHTTSEEEEEET
T ss_pred eEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEe
Confidence 99988854 2578888888
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-19 Score=175.72 Aligned_cols=190 Identities=10% Similarity=0.023 Sum_probs=115.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++++++++++.|+.+ +.++++ + |+|.+|++++|+||||||||||+++|+|+.+ |+.|.|.+.|++...
T Consensus 43 ~~~i~~~~l~~~~~tg--~~ald~---l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-----~~~g~i~~~G~~~~e 111 (347)
T 2obl_A 43 PDPLLRQVIDQPFILG--VRAIDG---L-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-----ADIIVLALIGERGRE 111 (347)
T ss_dssp SCSTTCCCCCSEECCS--CHHHHH---H-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHH
T ss_pred CCCeeecccceecCCC--CEEEEe---e-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEecccHHH
Confidence 3579999999999743 467555 9 9999999999999999999999999999999 999999998865310
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. ...+.. . ... .....+.+++|... ........+.. .+.+.....+ .
T Consensus 112 v----~~~i~~-~-~~~--~~~~~v~~~~~~~~~~~~r~~~~~~~~----------------~~ae~~~~~~--~----- 160 (347)
T 2obl_A 112 V----NEFLAL-L-PQS--TLSKCVLVVTTSDRPALERMKAAFTAT----------------TIAEYFRDQG--K----- 160 (347)
T ss_dssp H----HHHHTT-S-CHH--HHTTEEEEEECTTSCHHHHHHHHHHHH----------------HHHHHHHTTT--C-----
T ss_pred H----HHHHHh-h-hhh--hhhceEEEEECCCCCHHHHHHHHHHHH----------------HHHHHHHhcc--c-----
Confidence 0 000000 0 000 00011112222110 00000000000 0000000001 1
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhccCCC-ceeec------------------CCc-----cEEEEEcCcc
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP-YLSFR------------------DDK-----PVVVVTHGDL 296 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArALDEP-t~~L~------------------~g~-----tvIiiTH~~~ 296 (361)
++++ ++ ..+..||+|| ||+++| +-+.| ++|++ .|. ||+++||+.-
T Consensus 161 -~vl~-~l-------d~~~~lS~g~-r~v~la-l~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~ 229 (347)
T 2obl_A 161 -NVLL-MM-------DSVTRYARAA-RDVGLA-SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN 229 (347)
T ss_dssp -EEEE-EE-------ETHHHHHHHH-HHHHHH-TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC
T ss_pred -cHHH-HH-------hhHHHHHHHH-HHHHHH-cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC
Confidence 1111 12 2466899999 899999 33555 45632 256 8999999544
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
..+||++. ++.+|+|+..++..++...|.
T Consensus 230 ~~i~d~v~-~i~dG~Ivl~~~l~~~~~~Pa 258 (347)
T 2obl_A 230 DPIGDEVR-SILDGHIVLTRELAEENHFPA 258 (347)
T ss_dssp CHHHHHHH-HHCSEEEEBCHHHHTTTCSSC
T ss_pred ChhhhheE-EeeCcEEEEeCCHHHcCCCCC
Confidence 78899996 599999999998887765554
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.70 E-value=8.7e-19 Score=170.50 Aligned_cols=127 Identities=10% Similarity=0.037 Sum_probs=94.2
Q ss_pred cccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeE
Q 018083 88 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 167 (361)
Q Consensus 88 i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 167 (361)
++++++ | . ++ +++++|.|++|++++|+||||||||||+++|+|+++ |++|.|.++|.+..
T Consensus 151 ~~~v~f-y--~---~~---l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-----~~~g~i~i~~~~e~------ 210 (330)
T 2pt7_A 151 YNLLDN-K--E---QA---ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIEDTEEI------ 210 (330)
T ss_dssp TTTSTT-H--H---HH---HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-----TTSCEEEEESSCCC------
T ss_pred cCchhh-H--H---HH---HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCcEEEECCeecc------
Confidence 667777 6 1 34 556999999999999999999999999999999999 99999999875311
Q ss_pred eeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEE
Q 018083 168 EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFV 247 (361)
Q Consensus 168 ~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~v 247 (361)
.+...+ .. +++
T Consensus 211 -----------~~~~~~-------------------------------------~~-------i~~-------------- 221 (330)
T 2pt7_A 211 -----------VFKHHK-------------------------------------NY-------TQL-------------- 221 (330)
T ss_dssp -----------CCSSCS-------------------------------------SE-------EEE--------------
T ss_pred -----------ccccch-------------------------------------hE-------EEE--------------
Confidence 000000 00 000
Q ss_pred EechhhhhhccCCchhhhhhhhhhhhcc---------CCCcee--------ecCC-ccEEEEEc-CccccccchhhHhhh
Q 018083 248 VDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLS--------FRDD-KPVVVVTH-GDLLSLTDRARIRTY 308 (361)
Q Consensus 248 v~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~--------L~~g-~tvIiiTH-~~~~~~aDri~vvl~ 308 (361)
+ . + |||+||++||||| |||++. +..| .|+|++|| ..+...|||++ +|.
T Consensus 222 -----~-~----g--gg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~-~l~ 288 (330)
T 2pt7_A 222 -----F-F----G--GNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLA-NMS 288 (330)
T ss_dssp -----E-C----B--TTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHH-HHH
T ss_pred -----E-e----C--CChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhhe-ehh
Confidence 0 0 1 8999999999998 999974 2234 57999999 66888999995 599
Q ss_pred hhhhcCCC
Q 018083 309 LGELLGIP 316 (361)
Q Consensus 309 ~G~iv~~g 316 (361)
+|.....+
T Consensus 289 ~g~~~~~~ 296 (330)
T 2pt7_A 289 SSNSAARN 296 (330)
T ss_dssp HTSGGGTT
T ss_pred cCCcccCC
Confidence 98755433
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-18 Score=169.77 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=50.2
Q ss_pred hhccCCchhhhhhhhhhhhcc---------------CCCceeecC----------------CccEEEEEcC-ccccccch
Q 018083 255 KSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD----------------DKPVVVVTHG-DLLSLTDR 302 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL---------------DEPt~~L~~----------------g~tvIiiTH~-~~~~~aDr 302 (361)
++++.+||||||||++||||| ||||++||+ |.|||+|||+ .....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 688999999999999998876 999999753 7999999993 44678999
Q ss_pred hhHhhhhhhhcC
Q 018083 303 ARIRTYLGELLG 314 (361)
Q Consensus 303 i~vvl~~G~iv~ 314 (361)
++ +|++|+++.
T Consensus 354 ~~-~l~~G~i~~ 364 (365)
T 3qf7_A 354 KL-RITGGVVVN 364 (365)
T ss_dssp EE-EEETTEEC-
T ss_pred EE-EEECCEEEe
Confidence 95 599999875
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-19 Score=177.97 Aligned_cols=146 Identities=13% Similarity=0.039 Sum_probs=101.0
Q ss_pred ceeccCCCCCce--------------------EEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 107 MTLSDYDVPKTT--------------------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 107 L~~is~~I~~Ge--------------------~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
|++|||+|++|+ +++|+||||||||||+|+|+|+++ |++|+|.++|.+.+.
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-----p~~GsI~~~g~~~t~---- 109 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-----EEEGAAKTGVVEVTM---- 109 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-----TSTTSCCCCC----C----
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-----ccCceEEECCeecce----
Confidence 555999999999 999999999999999999999999 999999999866431
Q ss_pred EeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 167 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.++++|++. ++. ++.+++.++. .+.++.++++.+++.+.
T Consensus 110 --------------------~~~v~q~~~-~~~ltv~D~~g~~~----------~~~~~~~~L~~~~L~~~--------- 149 (413)
T 1tq4_A 110 --------------------ERHPYKHPN-IPNVVFWDLPGIGS----------TNFPPDTYLEKMKFYEY--------- 149 (413)
T ss_dssp --------------------CCEEEECSS-CTTEEEEECCCGGG----------SSCCHHHHHHHTTGGGC---------
T ss_pred --------------------eEEeccccc-cCCeeehHhhcccc----------hHHHHHHHHHHcCCCcc---------
Confidence 022233221 111 2233333221 12456677888887651
Q ss_pred EEEechhhhhhccCCchhh--hhhhhhhhhcc-------------------CCCceeecC--------------------
Q 018083 246 FVVDGLAVLKSMEGDSDVE--KQYNQIVATTF-------------------NCPYLSFRD-------------------- 284 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGG--qrQRvaIArAL-------------------DEPt~~L~~-------------------- 284 (361)
+..+. ||+| |+||++||+|| ||||++||.
T Consensus 150 ---------~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 150 ---------DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp ---------SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 23333 9999 99999999997 999999542
Q ss_pred -C----ccEEEEEc--Cc--cccccchhhHhhhhhh
Q 018083 285 -D----KPVVVVTH--GD--LLSLTDRARIRTYLGE 311 (361)
Q Consensus 285 -g----~tvIiiTH--~~--~~~~aDri~vvl~~G~ 311 (361)
| .+|+++|| .. +..+||++.-.+..|+
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 1 45778899 33 7888999953455554
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.6e-18 Score=149.94 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=42.2
Q ss_pred hhhccCCchhhhhhhhhhhhc-----c---------CC--CceeecC-------------CccEEEEEc-Cccccccchh
Q 018083 254 LKSMEGDSDVEKQYNQIVATT-----F---------NC--PYLSFRD-------------DKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 254 ~~~~~~~LSGGqrQRvaIArA-----L---------DE--Pt~~L~~-------------g~tvIiiTH-~~~~~~aDri 303 (361)
+++++.+||||||||++|||| + || |+++++. +.|+|++|| ..-..+++++
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHH
Confidence 478889999999999999996 6 99 9998642 567999998 3223333444
Q ss_pred hHhhhhhhhcC
Q 018083 304 RIRTYLGELLG 314 (361)
Q Consensus 304 ~vvl~~G~iv~ 314 (361)
. --.+|++++
T Consensus 150 ~-~r~~~~i~~ 159 (178)
T 1ye8_A 150 R-RLPGAVLIE 159 (178)
T ss_dssp H-TCTTCEEEE
T ss_pred H-hcCCcEEEE
Confidence 2 123456554
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-16 Score=151.08 Aligned_cols=144 Identities=13% Similarity=0.076 Sum_probs=94.1
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchH
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN 195 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~ 195 (361)
+|++++|+||||||||||+++|+|+++ |++|+|.+.|.++..... + .....+..+..+++++|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-----~~~g~V~l~g~D~~r~~a-----~----~ql~~~~~~~~i~~v~q~~~ 166 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-----NLGKKVMFCAGDTFRAAG-----G----TQLSEWGKRLSIPVIQGPEG 166 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-----TTTCCEEEECCCCSSTTT-----T----HHHHHHHHHHTCCEECCCTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEeecCCChhH-----H----HHHHHHHHhcCceEEEeCCC
Confidence 799999999999999999999999999 999999999988641000 0 00111111234677888876
Q ss_pred HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhc
Q 018083 196 MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 274 (361)
Q Consensus 196 l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArA 274 (361)
+++. ++.+++.++.. ...-..+++.+|..+. ...++.+|| +||++||||
T Consensus 167 ~~p~~~v~~~v~~~~~----------~~~d~~llDt~G~~~~-----------------~~~~~~eLs---~~r~~iaRa 216 (304)
T 1rj9_A 167 TDSAALAYDAVQAMKA----------RGYDLLFVDTAGRLHT-----------------KHNLMEELK---KVKRAIAKA 216 (304)
T ss_dssp CCHHHHHHHHHHHHHH----------HTCSEEEECCCCCCTT-----------------CHHHHHHHH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh----------CCCCEEEecCCCCCCc-----------------hHHHHHHHH---HHHHHHHHh
Confidence 6555 67777764321 0011124555565441 244555565 899999999
Q ss_pred c-CCCc---eeecC-----------------CccEEEEEc-Cccccccchh
Q 018083 275 F-NCPY---LSFRD-----------------DKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 275 L-DEPt---~~L~~-----------------g~tvIiiTH-~~~~~~aDri 303 (361)
+ .+|. ..||. +.|+|++|| +..++...-+
T Consensus 217 l~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l 267 (304)
T 1rj9_A 217 DPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLI 267 (304)
T ss_dssp CTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSSCCCTTHH
T ss_pred hcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcccccccHHH
Confidence 8 4453 44432 899999999 5544444333
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-15 Score=143.30 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=51.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-cceeeeccccc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVG 160 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G~~i 160 (361)
++++++|++. ++ |+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.++
T Consensus 5 ~~~l~~l~~~-------~v---l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-----~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 5 IPEFKKLGLP-------DK---VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPI 64 (261)
T ss_dssp -CCGGGSSCC-------TH---HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-----HHCCCEEEEEESSC
T ss_pred CCChHHCCCH-------HH---HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-----CCCCCEEEEcCCcc
Confidence 5788888854 23 66698 89999999999999999999999999999 88 99999998765
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-16 Score=154.71 Aligned_cols=181 Identities=9% Similarity=0.039 Sum_probs=105.7
Q ss_pred ceeccCCCCC--ceEEEEEccCCCCcchhhhhhhhhhccccccccc----ceeeecccccCcceEeEeeeecCCCcceee
Q 018083 107 MTLSDYDVPK--TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 180 (361)
Q Consensus 107 L~~is~~I~~--Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~----G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~ 180 (361)
.+.|+++|++ |+.++|+||||||||||+++|+|+++ |++ |++++++..... .+ .+..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-----~~~~~e~G~i~i~~~~~~~-------~~-----~~~~ 220 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-----TTSAWEYGREFVFEKLGGD-------EQ-----AMQY 220 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-----CEEECCTTHHHHHHSSSSC-------TT-----SSCT
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-----CCcchhhHHHHHHhhcCCC-------cc-----cCCh
Confidence 3459999999 99999999999999999999999999 888 998875321000 00 0111
Q ss_pred eecCCCCcccccchHHHHHHHHhccccceeEEecCCChhh-----hhhhccccccc--CCCcceeEEEEEEEEEEechhh
Q 018083 181 YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL-----RNRMRCKAHKI--GCEPSVIRKVNFVIFVVDGLAV 253 (361)
Q Consensus 181 ~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~-----~~~v~~~l~~~--gl~~~~~~~~~~~~~vv~~~~~ 253 (361)
.+. ..+++++|+..++..++.+|+.+...... .... ..+....+..+ +...+ +.++|+...
T Consensus 221 ~~~-~~I~~~~q~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~--------lllLdE~~~ 288 (365)
T 1lw7_A 221 SDY-PQMALGHQRYIDYAVRHSHKIAFIDTDFI---TTQAFCIQYEGKAHPFLDSMIKEYPFD--------VTILLKNNT 288 (365)
T ss_dssp TTH-HHHHHHHHHHHHHHHHHCSSEEEESSCHH---HHHHHHHHHHSCCCHHHHHHHHHSCCS--------EEEEEECCC
T ss_pred hHH-HHHHHHHHHHHHHHHhccCCEEEEeCCch---HHHHHHHHHcCCCCHHHHHHHhhcCCC--------EEEECCCCC
Confidence 111 23666788877777788888875432000 0000 00001111111 12222 133454210
Q ss_pred -hhhccCCchhhhhhhhhhhhccCCCceeecCCccEEEEEc-CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 254 -LKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 254 -~~~~~~~LSGGqrQRvaIArALDEPt~~L~~g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
+......+|+||+||.+|+++|.+-.. ..+.+||+++| ..+.++++++.+ +++ ++..+++.++
T Consensus 289 p~~~~g~~~sld~~~r~~l~~~l~~l~~--~~~~~ililde~~~~~r~~~~i~~-i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 289 EWVDDGLRSLGSQKQRQQFQQLLKKLLD--KYKVPYIEIESPSYLDRYNQVKAV-IEK--VLNEEEISEL 353 (365)
T ss_dssp C-----------CCSHHHHHHHHHHHHH--GGGCCCEEEECSSHHHHHHHHHHH-HHH--HTSCCCCSSC
T ss_pred CcccCCCcCCccHHHHHHHHHHHHHHHH--HcCCCEEEeCCCCHHHHHHHHHHH-HHH--HhcccchhHh
Confidence 011223589999999999999832211 12568999999 678889999964 764 7777777665
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.2e-15 Score=145.02 Aligned_cols=64 Identities=8% Similarity=-0.086 Sum_probs=54.0
Q ss_pred hhccC-Cchhhhhhhhhhhhcc------------------CCCceeecC-------------CccEEEEEcCccccccch
Q 018083 255 KSMEG-DSDVEKQYNQIVATTF------------------NCPYLSFRD-------------DKPVVVVTHGDLLSLTDR 302 (361)
Q Consensus 255 ~~~~~-~LSGGqrQRvaIArAL------------------DEPt~~L~~-------------g~tvIiiTH~~~~~~aDr 302 (361)
++++. .||||||||++||++| |||+++||+ +.|+|++||... .||+
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~~~--~~~~ 336 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTELAP--GAAL 336 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSCCT--TCSE
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEeccc--cCCE
Confidence 44565 7999999999999998 999999864 578999999322 8999
Q ss_pred hhHhhhhhhhcCCCCcccc
Q 018083 303 ARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 303 i~vvl~~G~iv~~g~~~~i 321 (361)
++ ++++|+++..|+++++
T Consensus 337 i~-~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 337 TL-RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EE-EEETTEEEECCCTTTS
T ss_pred EE-EEECCEEEecCCHHHH
Confidence 95 5999999999998876
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-15 Score=156.23 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=94.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccce--eeecccccC
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ--VTYNSSVGD 161 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~--I~i~G~~i~ 161 (361)
+.+++++++..|+.-. .+ ++..|++|++++|+||||||||||+++++|+.. +. |. +++.+++..
T Consensus 256 ~~~~~~~l~~g~~~ld--~v------L~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-----~~-G~~vi~~~~ee~~ 321 (525)
T 1tf7_A 256 QRSSNVRVSSGVVRLD--EM------CGGGFFKDSIILATGATGTGKTLLVSRFVENAC-----AN-KERAILFAYEESR 321 (525)
T ss_dssp CCCCCCEECCSCHHHH--HH------TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-----TT-TCCEEEEESSSCH
T ss_pred cccccceeecChHHHH--HH------hCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----hC-CCCEEEEEEeCCH
Confidence 3467777776664311 12 355999999999999999999999999999998 64 54 233221110
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
+ .+.... . .++. + .. + +...|+..
T Consensus 322 ------------------------------~--~l~~~~--~--~~g~------~---~~----~-~~~~g~~~------ 345 (525)
T 1tf7_A 322 ------------------------------A--QLLRNA--Y--SWGM------D---FE----E-MERQNLLK------ 345 (525)
T ss_dssp ------------------------------H--HHHHHH--H--TTSC------C---HH----H-HHHTTSEE------
T ss_pred ------------------------------H--HHHHHH--H--HcCC------C---HH----H-HHhCCCEE------
Confidence 0 011111 0 0110 0 00 1 11223322
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------------CccEEEE
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------------DKPVVVV 291 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------------g~tvIii 291 (361)
+.+..|.+||+||+||+++|+++ | |+++|+. |+|||++
T Consensus 346 -----------~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilv 413 (525)
T 1tf7_A 346 -----------IVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFT 413 (525)
T ss_dssp -----------ECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -----------EEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 23667889999999999999997 8 9887542 8999999
Q ss_pred EcCc------------cccccchhhHhhhhhh
Q 018083 292 THGD------------LLSLTDRARIRTYLGE 311 (361)
Q Consensus 292 TH~~------------~~~~aDri~vvl~~G~ 311 (361)
||+. +..+||+++ +|+.|+
T Consensus 414 sh~~~~~~~~~~~~~~l~~~~D~vi-~L~~ge 444 (525)
T 1tf7_A 414 NTSDQFMGAHSITDSHISTITDTII-LLQYVE 444 (525)
T ss_dssp EECSSSSCCCSSCSSCCTTTCSEEE-EEEEEE
T ss_pred ECcccccCcccccCcccceeeeEEE-EEEEEE
Confidence 9943 347899995 599887
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-15 Score=143.98 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=42.5
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc-eeeecccc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSV 159 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G~~ 159 (361)
|+++++.|++|++++|+||||||||||++.|++... |.+| .|.+.+.+
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-----~~~G~~v~~~~~e 73 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-----TAMGKKVGLAMLE 73 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-----HTSCCCEEEEESS
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-----HHcCCeEEEEeCc
Confidence 666999999999999999999999999999999998 8878 77665543
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-15 Score=165.10 Aligned_cols=146 Identities=14% Similarity=0.075 Sum_probs=87.0
Q ss_pred ccccccc-----ceeeecCcceeeccccceeccCCCCC-------ceEEEEEccCCCCcchhhhhhhhhhcccccccccc
Q 018083 84 SLTDAKN-----KILSYTPGAWIENVGGMTLSDYDVPK-------TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 151 (361)
Q Consensus 84 ~~lei~n-----l~~~Y~~~~~~~~l~~L~~is~~I~~-------Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G 151 (361)
++|++++ |++.|.++. .+ ++|++|++++ |++++|+||||||||||+|+| |++. +- +
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~--~v---~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-----~~-a 816 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDD--FI---PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-----VM-A 816 (1022)
T ss_dssp CCEEEEEECCCC------CCC--CC---CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-----HH-H
T ss_pred ceEEEEeccccEEEEEecCCc--eE---eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-----HH-h
Confidence 3588999 999984332 35 6679999987 899999999999999999999 9997 41 1
Q ss_pred eeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhccccccc
Q 018083 152 QVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 152 ~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~ 231 (361)
+ ..++|||+..- .++.++ ++..+
T Consensus 817 q---------------------------------iG~~Vpq~~~~--l~v~d~----------------------I~~ri 839 (1022)
T 2o8b_B 817 Q---------------------------------MGCYVPAEVCR--LTPIDR----------------------VFTRL 839 (1022)
T ss_dssp T---------------------------------TTCCEESSEEE--ECCCSB----------------------EEEEC
T ss_pred h---------------------------------eeEEeccCcCC--CCHHHH----------------------HHHHc
Confidence 0 01134443210 011111 12234
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec-----------------C-
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR-----------------D- 284 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~-----------------~- 284 (361)
|+.+.+ ....+++|+++++ +++|+++ |||++|++ .
T Consensus 840 g~~d~~-----------------~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~ 901 (1022)
T 2o8b_B 840 GASDRI-----------------MSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI 901 (1022)
T ss_dssp C--------------------------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHH-----------------hhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC
Confidence 544422 3445678888776 7888876 99998842 2
Q ss_pred CccEEEEEc--CccccccchhhHhhhhhhhc--CCCCc
Q 018083 285 DKPVVVVTH--GDLLSLTDRARIRTYLGELL--GIPPA 318 (361)
Q Consensus 285 g~tvIiiTH--~~~~~~aDri~vvl~~G~iv--~~g~~ 318 (361)
|+++|++|| +.+..+||++.+ + +|++. ..|++
T Consensus 902 g~~vl~~TH~~el~~~~~d~~~v-~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 902 KCRTLFSTHYHSLVEDYSQNVAV-R-LGHMACMVENEC 937 (1022)
T ss_dssp CCEEEEECCCHHHHHHTSSCSSE-E-EEEEEEC-----
T ss_pred CCEEEEEeCCHHHHHHhCCccee-e-cCeEEEEEecCc
Confidence 789999999 566678999943 4 68876 44443
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.9e-16 Score=134.97 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=54.7
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
++.+++++.|+.. .+ ++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.
T Consensus 8 ~~~~~~~~~~g~~---~~---l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l------~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 8 IPDEFSMLRFGKK---FA---EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI------GHQGNVKSPTYTLV 71 (158)
T ss_dssp ECSHHHHHHHHHH---HH---HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT------TCCSCCCCCTTTCE
T ss_pred cCCHHHHHHHHHH---HH---HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC------CCCCeEEECCEeee
Confidence 4566788888642 46 55599999999999999999999999999999998 36899999998874
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-16 Score=150.79 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=22.3
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhh-hcccccccccceeeecccccC
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl-~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.||++.|+.. .+ +++++|+| +|+||||||||||+++|.|. .. |++| +.++|.++.
T Consensus 2 ~~l~~~~~~~---~~---l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-----~~~g-i~~~g~~~~ 57 (301)
T 2qnr_A 2 SNLPNQVHRK---SV---KKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-----PERV-ISGAAEKIE 57 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------
T ss_pred CCCcceECCE---EE---EcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-----CCCC-cccCCcccC
Confidence 4788999763 56 55599987 99999999999999999997 66 8888 888776653
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-15 Score=140.88 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=26.8
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|+++||++++|+++||+||||||||||+++|+|++.
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 555999999999999999999999999999999873
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.5e-15 Score=159.43 Aligned_cols=134 Identities=11% Similarity=0.056 Sum_probs=84.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
++|++|++++|++++|+||||||||||+|+|+.+.-. +..|.. ++... ..
T Consensus 652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~----aq~G~~-----------vpa~~--------~~------- 701 (934)
T 3thx_A 652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM----AQIGCF-----------VPCES--------AE------- 701 (934)
T ss_dssp CEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH----HHHTCC-----------BSEEE--------EE-------
T ss_pred cccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH----HhcCCc-----------ccccc--------cc-------
Confidence 5679999999999999999999999999999554320 222200 00000 00
Q ss_pred CcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhh
Q 018083 187 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 266 (361)
Q Consensus 187 i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 266 (361)
+ ..+..++..+|+.+.+ .+..+++|++|+
T Consensus 702 ~----------------------------------~~~d~i~~~ig~~d~l-----------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 V----------------------------------SIVDCILARVGAGDSQ-----------------LKGVSTFMAEML 730 (934)
T ss_dssp E----------------------------------ECCSEEEEECC--------------------------CHHHHHHH
T ss_pred c----------------------------------hHHHHHHHhcCchhhH-----------------HHhHhhhHHHHH
Confidence 0 0011234445554422 344445566666
Q ss_pred hhhhhhhcc--------CCCceeec------------------CCccEEEEEc-CccccccchhhHhhhhhhhcCCCCcc
Q 018083 267 YNQIVATTF--------NCPYLSFR------------------DDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAK 319 (361)
Q Consensus 267 QRvaIArAL--------DEPt~~L~------------------~g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~ 319 (361)
|+..|++++ |||++|++ .|+|+|++|| .++..+||++. .+.+|++...++.+
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~-~v~ng~v~~~~~~~ 809 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIP-TVNNLHVTALTTEE 809 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCT-TEEEEEEEEEEETT
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccc-eeEeeEEEEEecCC
Confidence 666666444 99999953 2899999999 67778999995 59999998877776
Q ss_pred ccc
Q 018083 320 QIF 322 (361)
Q Consensus 320 ~i~ 322 (361)
++.
T Consensus 810 ~l~ 812 (934)
T 3thx_A 810 TLT 812 (934)
T ss_dssp EEE
T ss_pred cEE
Confidence 653
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-15 Score=158.31 Aligned_cols=174 Identities=14% Similarity=0.132 Sum_probs=82.2
Q ss_pred ccccccceeeecCcceeeccccce-------eccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc-ccceeeec
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMT-------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYN 156 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~-------~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p-~~G~I~i~ 156 (361)
.++++|+++.|+... .++++.++ +.+|+++. ++|+||||||||||+++|+|++. | ++|.|+++
T Consensus 10 ~i~~~~l~~~~~~~~-r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~-----P~~sG~vt~~ 80 (608)
T 3szr_A 10 SVAENNLCSQYEEKV-RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL-----PRGSGIVTRC 80 (608)
T ss_dssp ----------CHHHH-HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC------------CCCS
T ss_pred hhhhhhhhHHHHHHH-HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC-----CCCCCeEEEc
Confidence 578999999996432 12222100 12477765 99999999999999999999998 7 79999999
Q ss_pred ccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCc
Q 018083 157 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 235 (361)
Q Consensus 157 G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~ 235 (361)
|.++... . . ......+..+++++|+..+++. ++.+|+.+..............+.+.-.+..... +
T Consensus 81 g~~i~~~---~---~------~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~-p 147 (608)
T 3szr_A 81 PLVLKLK---K---L------VNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDV-P 147 (608)
T ss_dssp CEEEEEE---E---C------SSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSS-C
T ss_pred CEEEEEe---c---C------CccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCC-C
Confidence 9876310 0 0 0011234567888888766555 8888887643211111111111111111111111 2
Q ss_pred ceeEEEEEEEEEEechhhhhhccCCchhh-hhhhhhhhhcc-CCCceeecCCccEEEEEc
Q 018083 236 SVIRKVNFVIFVVDGLAVLKSMEGDSDVE-KQYNQIVATTF-NCPYLSFRDDKPVVVVTH 293 (361)
Q Consensus 236 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGG-qrQRvaIArAL-DEPt~~L~~g~tvIiiTH 293 (361)
+ +.++|++.+.......|+.+ ++|...+++.+ .+|. +.+++++||
T Consensus 148 ~--------LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~-----~iil~vvt~ 194 (608)
T 3szr_A 148 D--------LTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE-----TISLVVVPS 194 (608)
T ss_dssp C--------EEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS-----CCEEEEEES
T ss_pred c--------eeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC-----CCceEEEec
Confidence 1 46788887766667777665 44666666663 3332 245666677
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-14 Score=128.76 Aligned_cols=137 Identities=15% Similarity=0.208 Sum_probs=83.9
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHH
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINM 196 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l 196 (361)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.. .+...+..+++++|+..-
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~------~~G-i~~~g~~~~-----------------~~~~~~~~ig~~~~~~~g 56 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK------SSG-VPVDGFYTE-----------------EVRQGGRRIGFDVVTLSG 56 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH------HTT-CCCEEEECC-----------------EEETTSSEEEEEEEETTS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc------cCC-EEEcCEecc-----------------hhHhhhceEEEEEEeccc
Confidence 68999999999999999999999996 568 999886653 111234445666665410
Q ss_pred HHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcc-eeEEEEEEEEEEechhhhhhccCCchhhhhhhh-hhhh-
Q 018083 197 IKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS-VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ-IVAT- 273 (361)
Q Consensus 197 ~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~-~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRv-aIAr- 273 (361)
. ..++ ..+.+... .. ......++...+|+|||+++ ++++
T Consensus 57 ---~-~~~l-----------------------~~~~~~~~~~~-----------~~~~v~~~~~~ls~~er~~~~~l~~~ 98 (189)
T 2i3b_A 57 ---T-RGPL-----------------------SRVGLEPPPGK-----------RECRVGQYVVDLTSFEQLALPVLRNA 98 (189)
T ss_dssp ---C-EEEE-----------------------EECCCCCCSSS-----------CCEESSSSEECHHHHHTTTTTTTCCC
T ss_pred ---c-eehh-----------------------hcccccCCccc-----------cccccceEEEcchHHHHHHHHHHhhh
Confidence 0 0010 11111000 00 00012556667999999988 5555
Q ss_pred --cc---------CC--Cceee------------cCCccEEE--EE--cCccccccchhhHhhhhhhhcCCC
Q 018083 274 --TF---------NC--PYLSF------------RDDKPVVV--VT--HGDLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 274 --AL---------DE--Pt~~L------------~~g~tvIi--iT--H~~~~~~aDri~vvl~~G~iv~~g 316 (361)
|+ || |+..+ +...|+|+ ++ |+....++|+|. .+.+|+|+...
T Consensus 99 a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~-~~~~~~i~~~~ 169 (189)
T 2i3b_A 99 DCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIR-NRKDVKVFNVT 169 (189)
T ss_dssp CCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHH-TTCCSEEEECC
T ss_pred hHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHe-ecCCcEEEEeC
Confidence 33 99 66432 23556665 44 843367899995 58889887654
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-15 Score=134.16 Aligned_cols=157 Identities=11% Similarity=0.113 Sum_probs=84.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhccccccc-----ccceeeecccccCcceEeEeeeecCCCcceeeeecCCCC
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-----ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS 187 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p-----~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i 187 (361)
-|++|++++|+||||||||||+++|+|++... + ..+.+++++.+.. . ...+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~---~~~g~~~~~~i~~~~~~~~-----------------~----~~~i 76 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTENTF-----------------R----PERI 76 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTCCSCEEEEEESSSCC-----------------C----HHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcc---cccCCCCCEEEEEECCCCC-----------------C----HHHH
Confidence 79999999999999999999999999976611 2 2235555543311 0 0123
Q ss_pred cccccchHHHHHHHHhccccceeEEecCCChhh---hhhhcccccc-cC-CCcceeEEEEEEEEEEechhhhhhccCCch
Q 018083 188 DDASDNINMIKLWIMEGVRHGELVIRRSDSSSL---RNRMRCKAHK-IG-CEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 262 (361)
Q Consensus 188 ~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~---~~~v~~~l~~-~g-l~~~~~~~~~~~~~vv~~~~~~~~~~~~LS 262 (361)
.+++|...+++.++.+|+.+.... ..... .+++.+++.. +. ... .=++++|++... ...++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-------~~llilDe~~~~--l~~~~~ 143 (231)
T 4a74_A 77 REIAQNRGLDPDEVLKHIYVARAF----NSNHQMLLVQQAEDKIKELLNTDRP-------VKLLIVDSLTSH--FRSEYI 143 (231)
T ss_dssp HHHHHHTTSCHHHHHHTEEEEECC----SHHHHHHHHHHHHHHHHHHTTSSSC-------EEEEEEETSSHH--HHHHSC
T ss_pred HHHHHHcCCCHHHHhhcEEEEecC----ChHHHHHHHHHHHHHHHHhcccCCc-------eeEEEECChHHH--hccccC
Confidence 344555555555778887754321 11111 1222222221 10 111 124677886532 233444
Q ss_pred h----hhhhhh--hhhhccCCCceee--cCCccEEEEEc--Cc----cccccchhhHhhhhhh
Q 018083 263 V----EKQYNQ--IVATTFNCPYLSF--RDDKPVVVVTH--GD----LLSLTDRARIRTYLGE 311 (361)
Q Consensus 263 G----GqrQRv--aIArALDEPt~~L--~~g~tvIiiTH--~~----~~~~aDri~vvl~~G~ 311 (361)
+ +|||+. .+.+.| ..+ ..|+|||++|| .. +..+||+++ ++++|+
T Consensus 144 ~~~~~~~r~~~~~~~~~~l----~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l-~l~~~~ 201 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADL----HRLANLYDIAVFVTNQVQANGGHILAHSATLRV-YLRKGK 201 (231)
T ss_dssp STTHHHHHHHHHHHHHHHH----HHHHHHHTCEEEEEEECC---------CCSEEE-EEEECT
T ss_pred CCcchhHHHHHHHHHHHHH----HHHHHHCCCeEEEEeecccCcchhhHhhceEEE-EEEecC
Confidence 4 344332 233332 111 23889999999 33 678899995 588754
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-14 Score=141.72 Aligned_cols=69 Identities=10% Similarity=0.107 Sum_probs=61.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++++++++++.|+.. .+ |++++|++.+|++++|+||||||||||+++|+|++. |++|+|.+.|.++.
T Consensus 26 ~i~~ie~~~~~~~~~~~---~~---l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-----~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 26 AITLAESRRADHRAAVR---DL---IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-----AAGHKVAVLAVDPS 94 (337)
T ss_dssp HHHHHTCSSHHHHHHHH---HH---HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECGG
T ss_pred HHHHHeeCCcccccChH---HH---HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-----hCCCEEEEEEEcCc
Confidence 34579999999999642 45 556999999999999999999999999999999999 99999999998764
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-14 Score=144.72 Aligned_cols=168 Identities=11% Similarity=0.119 Sum_probs=102.5
Q ss_pred eeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCC
Q 018083 108 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS 187 (361)
Q Consensus 108 ~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i 187 (361)
+++||++++|++++|+||||||||||+++|+|+++ +++|+|.++|.+..... .+. ....+..+..+
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-----~~~G~V~l~g~D~~r~a-----a~e----QL~~~~~r~~I 349 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-----QQGKSVMLAAGDTFRAA-----AVE----QLQVWGQRNNI 349 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEECCCTTCHH-----HHH----HHHHHHHHHTC
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-----hcCCeEEEecCcccchh-----hHH----HHHHHHHhcCc
Confidence 45999999999999999999999999999999999 99999999887753100 000 00111123457
Q ss_pred cccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhh
Q 018083 188 DDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 266 (361)
Q Consensus 188 ~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 266 (361)
++++|+..+++. ++.+++.++... .. + .-+++.+|..... ..+..+|+
T Consensus 350 ~vV~Q~~~~~p~~tV~e~l~~a~~~--~~------D--vVLIDTaGrl~~~-----------------~~lm~EL~---- 398 (503)
T 2yhs_A 350 PVIAQHTGADSASVIFDAIQAAKAR--NI------D--VLIADTAGRLQNK-----------------SHLMEELK---- 398 (503)
T ss_dssp CEECCSTTCCHHHHHHHHHHHHHHT--TC------S--EEEECCCCSCCCH-----------------HHHHHHHH----
T ss_pred eEEecccCcCHHHHHHHHHHHHHhc--CC------C--EEEEeCCCccchh-----------------hhHHHHHH----
Confidence 888887654444 788888754320 00 0 1134444443210 22222333
Q ss_pred hhhhhhhcc--CCCc---eeec-----------------CCccEEEEEc-CccccccchhhHhhhh-h-hhcCCCCcccc
Q 018083 267 YNQIVATTF--NCPY---LSFR-----------------DDKPVVVVTH-GDLLSLTDRARIRTYL-G-ELLGIPPAKQI 321 (361)
Q Consensus 267 QRvaIArAL--DEPt---~~L~-----------------~g~tvIiiTH-~~~~~~aDri~vvl~~-G-~iv~~g~~~~i 321 (361)
|++.+++++ +.|. .-++ -+.|.||+|| +...+....+.+ ++. | .|...|.-+.+
T Consensus 399 kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~itgvIlTKLD~takgG~~lsi-~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 399 KIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSV-ADQFGIPIRYIGVGERI 477 (503)
T ss_dssp HHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCSEEEEECGGGCSCCTHHHHH-HHHHCCCEEEEECSSSG
T ss_pred HHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCCEEEEEcCCCcccccHHHHH-HHHHCCCEEEEecCCCh
Confidence 566666655 2332 1111 2789999999 766777777764 442 3 45555555444
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.41 E-value=6.5e-14 Score=136.06 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=44.4
Q ss_pred hhhhccCCchhhhhh------hhhhhhcc---------CCCceeecC----------------CccEEEEEc-Ccccccc
Q 018083 253 VLKSMEGDSDVEKQY------NQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLT 300 (361)
Q Consensus 253 ~~~~~~~~LSGGqrQ------RvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~~~a 300 (361)
..++++.+||||||| |+++|+|| ||||++||+ +.|||+||| ..+...|
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~ 320 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 320 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGC
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhC
Confidence 357889999999999 55666665 999999763 679999999 5677889
Q ss_pred chhhHhhh
Q 018083 301 DRARIRTY 308 (361)
Q Consensus 301 Dri~vvl~ 308 (361)
|+++ +|.
T Consensus 321 d~~~-~l~ 327 (339)
T 3qkt_A 321 DHVI-RIS 327 (339)
T ss_dssp SEEE-EEE
T ss_pred CEEE-EEE
Confidence 9995 464
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-14 Score=125.65 Aligned_cols=63 Identities=10% Similarity=0.115 Sum_probs=36.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
+|+++|+++.|+. .+ +++ |++++|..++|+|+||||||||+|+|+|........|+.|.+.+.
T Consensus 3 ~l~~~~~~~~~~~----~~---l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~ 65 (210)
T 1pui_A 3 NLNYQQTHFVMSA----PD---IRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI 65 (210)
T ss_dssp --------CEEEE----SS---GGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCE
T ss_pred chhhhhhhheeec----CC---HhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee
Confidence 5899999999962 23 655 999999999999999999999999999987101111788877654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-14 Score=126.32 Aligned_cols=118 Identities=13% Similarity=0.025 Sum_probs=71.8
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCccccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 192 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q 192 (361)
.+++|++++|+||||||||||+++|++.. ..|.|.++|.++.. .. ..+...++++|
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~-------~~g~i~i~~d~~~~---------------~~--~~~~~~~~~~~ 60 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP-------GVPKVHFHSDDLWG---------------YI--KHGRIDPWLPQ 60 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS-------SSCEEEECTTHHHH---------------TC--CSSCCCTTSSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc-------CCCeEEEcccchhh---------------hh--hcccccCCccc
Confidence 57899999999999999999999999973 46899999876530 00 11234567777
Q ss_pred chHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhh--hhccCCchhhhhhhhh
Q 018083 193 NINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL--KSMEGDSDVEKQYNQI 270 (361)
Q Consensus 193 ~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~--~~~~~~LSGGqrQRva 270 (361)
+.. ...++.+++.+....... ......+..++...++.. +. +..+..+|+|++|+++
T Consensus 61 ~~~-~~~~v~~~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~ls~~~~~~v~ 119 (191)
T 1zp6_A 61 SHQ-QNRMIMQIAADVAGRYAK---EGYFVILDGVVRPDWLPA-----------------FTALARPLHYIVLRTTAAEA 119 (191)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHH---TSCEEEECSCCCTTTTHH-----------------HHTTCSCEEEEEEECCHHHH
T ss_pred hhh-hhHHHHHHHHHHHHHHhc---cCCeEEEeccCcHHHHHH-----------------HHhcCCCeEEEEecCCHHHH
Confidence 654 223566666432210000 000011122222223322 11 2345679999999999
Q ss_pred hhhcc
Q 018083 271 VATTF 275 (361)
Q Consensus 271 IArAL 275 (361)
+||++
T Consensus 120 ~~R~~ 124 (191)
T 1zp6_A 120 IERCL 124 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99998
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-14 Score=145.41 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=54.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.++++++++.|+.. .+ |+++ +. .+|++++|+||||||||||+++|+|++. |++|.|.+.+.++.
T Consensus 143 ~~~l~~Lg~~~~~~---~~---L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~-----~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 143 RLDLHSLGMTAHNH---DN---FRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN-----SSERNILTVEDPIE 206 (418)
T ss_dssp CCCGGGSCCCHHHH---HH---HHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC-----CTTSCEEEEESSCC
T ss_pred CCCHHHcCCCHHHH---HH---HHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEEecccch
Confidence 57899999888542 45 5558 64 8999999999999999999999999999 88999999987764
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-14 Score=154.01 Aligned_cols=115 Identities=11% Similarity=0.057 Sum_probs=76.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccc-ceeeecccccCcceEeEeeeecCCCcceeeeecCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 185 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~-G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~ 185 (361)
++|++|++++|++++|+||||||||||+|+|+++.- ... |. + +
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-----~aq~g~-~-----v------------------------- 706 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI-----MAQIGS-Y-----V------------------------- 706 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH-----HHHHTC-C-----B-------------------------
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH-----HhhcCc-c-----c-------------------------
Confidence 566999999999999999999999999999988754 211 10 0 0
Q ss_pred CCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhh
Q 018083 186 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 265 (361)
Q Consensus 186 ~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 265 (361)
+.... . ...+..++..+++.+. +.+..+++|+||
T Consensus 707 -----pa~~~----------~--------------i~~~d~i~~~ig~~d~-----------------l~~~~stfs~em 740 (918)
T 3thx_B 707 -----PAEEA----------T--------------IGIVDGIFTRMGAADN-----------------IYKGRSTFMEEL 740 (918)
T ss_dssp -----SSSEE----------E--------------EECCSEEEEEC---------------------------CCHHHHH
T ss_pred -----cchhh----------h--------------hhHHHHHHHhCChHHH-----------------HHHhHHHhhHHH
Confidence 00000 0 0001223445555553 256678999999
Q ss_pred hhhhhhhhcc--------CCCceeec------------------CCccEEEEEc-Cccccccchh
Q 018083 266 QYNQIVATTF--------NCPYLSFR------------------DDKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 266 rQRvaIArAL--------DEPt~~L~------------------~g~tvIiiTH-~~~~~~aDri 303 (361)
+|++.|+++. |||++|++ .|+|+|++|| .++..+||+.
T Consensus 741 ~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 741 TDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 9999999875 99999953 2899999999 5666788876
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=8.4e-15 Score=141.32 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=85.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhcccc---cccccceeeecccccCcceEeEeeeecCCCcceeeeecCC----CCcc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDK---FASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS----LSDD 189 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~---~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~----~i~~ 189 (361)
-++++|+|+||||||||+|.|.|+..+.. ..|+.|+|.++|..+.... ..-..+... -++- +.+. .+++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~-~~~~el~~g--Cicc-~~~~~~~~~l~~ 79 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRA-TQIKTLTNG--CICC-SRSNELEDALLD 79 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTS-CEEEEETTS--CEEE-CTTSCHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCC-CCEEEECCC--ceEE-cccHHHHHHHHH
Confidence 47899999999999999999999871100 0189999999998764210 000111100 0000 0111 1111
Q ss_pred c---ccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhh
Q 018083 190 A---SDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 265 (361)
Q Consensus 190 v---~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 265 (361)
+ +|+..++.. ++.+++.++ ......+.. ...-... ...+++.++.+||...+.+++. +||+||
T Consensus 80 l~~~~q~~~~~~~~~v~E~~~l~-------~p~~~~~~~---~~~~~~~--~~~~l~~~l~~vd~~~~~~~~~-~ls~g~ 146 (318)
T 1nij_A 80 LLDNLDKGNIQFDRLVIECTGMA-------DPGPIIQTF---FSHEVLC--QRYLLDGVIALVDAVHADEQMN-QFTIAQ 146 (318)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTC-------CHHHHHHHH---HHSHHHH--HHEEEEEEEEEEETTTHHHHHH-HCHHHH
T ss_pred HHhHHhcCCCCCCEEEEeCCCCC-------CHHHHHHHH---hcCcccc--CeEEECCEEEEEEHHHHHHHHh-hchHHH
Confidence 1 111110000 111111111 001100000 0000000 1124566788999987766665 899999
Q ss_pred hhhhhhhhcc-------CCCcee-------ecCCccEEEEEc
Q 018083 266 QYNQIVATTF-------NCPYLS-------FRDDKPVVVVTH 293 (361)
Q Consensus 266 rQRvaIArAL-------DEPt~~-------L~~g~tvIiiTH 293 (361)
+||+..++++ ||| .. +.++.||+++||
T Consensus 147 ~Q~~~ad~ill~k~dl~de~-~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 147 SQVGYADRILLTKTDVAGEA-EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp HHHHTCSEEEEECTTTCSCT-HHHHHHHHHHCSSSCEEECCS
T ss_pred HHHHhCCEEEEECcccCCHH-HHHHHHHHHhCCCCeEEEecc
Confidence 9999999998 677 22 346899999999
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-14 Score=139.41 Aligned_cols=124 Identities=15% Similarity=0.060 Sum_probs=80.7
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee---cccccCcceEeEeeeecCCCcceeeeecCCCCcc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD 189 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i---~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~ 189 (361)
++.+|++++|+||||||||||+|+|+ +.+ |++|+|.+ +|++++... + ... ...+++
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~t~~~--~------------~~~-~~~~g~ 219 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHTTTGV--R------------LIP-FGKGSF 219 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------CCCCE--E------------EEE-ETTTEE
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCceeeE--E------------EEE-cCCCcE
Confidence 45679999999999999999999999 998 99999999 888765211 0 011 113556
Q ss_pred cccchHH-----HHH-HHHhcc--cccee-----EEec-CCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhh
Q 018083 190 ASDNINM-----IKL-WIMEGV--RHGEL-----VIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK 255 (361)
Q Consensus 190 v~q~~~l-----~~~-ti~~ni--~~~~~-----~~~~-~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~ 255 (361)
++|++.+ ++. ++ +|+ .|+.. .... ....+...++.++++.++|.+. .++
T Consensus 220 v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~----------------~~~ 282 (302)
T 2yv5_A 220 VGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCE----------------RYK 282 (302)
T ss_dssp EESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHH----------------HHH
T ss_pred EEECcCcCcCcccccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHH----------------HHH
Confidence 6666532 122 45 666 44310 0111 1234456778899999999752 358
Q ss_pred hccCCchhhhhhhhhhhhc
Q 018083 256 SMEGDSDVEKQYNQIVATT 274 (361)
Q Consensus 256 ~~~~~LSGGqrQRvaIArA 274 (361)
+++..|||.+++++.|||-
T Consensus 283 ~~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 283 SYLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp HHHHHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999998999999983
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.4e-15 Score=159.47 Aligned_cols=87 Identities=16% Similarity=0.165 Sum_probs=72.1
Q ss_pred hcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-----------CCCceeecC--------
Q 018083 224 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD-------- 284 (361)
Q Consensus 224 v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPt~~L~~-------- 284 (361)
..+.|..+||... .+++++.+||||||||++||||| ||||++|++
T Consensus 444 ~~~~L~~vgL~~l----------------~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~ 507 (916)
T 3pih_A 444 RLEFLVDVGLEYL----------------TLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK 507 (916)
T ss_dssp HHHHHHTTTCTTC----------------BTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred HHHHHHHcCCccc----------------cccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH
Confidence 3456788898752 14889999999999999999998 999999753
Q ss_pred --------CccEEEEEcC-ccccccchhhHhh------hhhhhcCCCCccccccCCCC
Q 018083 285 --------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 285 --------g~tvIiiTH~-~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~~~ 327 (361)
|.|||+|||+ +....||+|+ +| ++|++++.|++++++..+..
T Consensus 508 ~L~~L~~~G~TvivVtHd~~~~~~aD~ii-~lgpgag~~~G~iv~~G~~~e~~~~~~~ 564 (916)
T 3pih_A 508 TLKKLRDLGNTVIVVEHDEEVIRNADHII-DIGPGGGTNGGRVVFQGTVDELLKNPDS 564 (916)
T ss_dssp HHHHTTTTTCEEEEECCCHHHHHTCSEEE-EEESSSGGGCSEEEEEECHHHHHHSCTT
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHhCCEEE-EEcCCcccCCCEEEEeechhhhhcCchh
Confidence 8999999993 4445699995 58 89999999999999876653
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.1e-14 Score=135.11 Aligned_cols=143 Identities=10% Similarity=0.052 Sum_probs=87.6
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCccccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 192 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q 192 (361)
..++|++++|+||||||||||+++|+|+++ |++|+|.+.|.++....... ....+..+..+.+++|
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~-----~~~g~V~l~g~D~~r~~a~e---------ql~~~~~~~gv~~v~q 190 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK-----NHGFSVVIAASDTFRAGAIE---------QLEEHAKRIGVKVIKH 190 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECCSSTTHHH---------HHHHHHHHTTCEEECC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCEEEEEeecccccchHH---------HHHHHHHHcCceEEec
Confidence 558999999999999999999999999999 99999999998864100000 0000011112335667
Q ss_pred chHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhh
Q 018083 193 NINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 271 (361)
Q Consensus 193 ~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaI 271 (361)
...+.+. ++.+|+.++... ..-.-+++..|+.+. ......+||+ |
T Consensus 191 ~~~~~p~~~v~e~l~~~~~~----------~~d~vliDtaG~~~~-----------------~~~l~~eL~~-------i 236 (328)
T 3e70_C 191 SYGADPAAVAYDAIQHAKAR----------GIDVVLIDTAGRSET-----------------NRNLMDEMKK-------I 236 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHH----------TCSEEEEEECCSCCT-----------------TTCHHHHHHH-------H
T ss_pred cccCCHHHHHHHHHHHHHhc----------cchhhHHhhccchhH-----------------HHHHHHHHHH-------H
Confidence 6655555 777887653210 000112444454331 1333444543 6
Q ss_pred hhcc--CCCceeecC-----------------CccEEEEEc-Cccccccchh
Q 018083 272 ATTF--NCPYLSFRD-----------------DKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 272 ArAL--DEPt~~L~~-----------------g~tvIiiTH-~~~~~~aDri 303 (361)
+|++ |||+..+|. +.|+|++|| +...+...-+
T Consensus 237 ~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l 288 (328)
T 3e70_C 237 ARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAAL 288 (328)
T ss_dssp HHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHH
T ss_pred HHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHH
Confidence 7776 788766542 889999999 5544444433
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.35 E-value=9.7e-14 Score=136.42 Aligned_cols=122 Identities=11% Similarity=0.007 Sum_probs=79.0
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec-ccccCcceEeEeeeecCCCcceeeeecCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SSVGDGTYFLQEYTIPRGSNSFSLYDTRS 185 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~-G~~i~~~~~~~~~~i~~~~~~~~~~d~r~ 185 (361)
++++++.+ +|++++|+||||||||||+|+|+|+... |++|+|.++ |..... ....
T Consensus 206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~----~~~G~I~~~~G~g~~t-------------------t~~~ 261 (358)
T 2rcn_A 206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE----ILTNDVSNVSGLGQHT-------------------TTAA 261 (358)
T ss_dssp HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC----CCCC--------------------------------CCC
T ss_pred HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc----cccCCccccCCCCccc-------------------eEEE
Confidence 45577754 7999999999999999999999998851 578999886 644320 0111
Q ss_pred CCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhh
Q 018083 186 LSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 264 (361)
Q Consensus 186 ~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGG 264 (361)
.+++++|+..++.. ++.++... ..+..+..+.+.++++.+++.. +.+..+.+|| |
T Consensus 262 ~i~~v~q~~~l~dtpgv~e~~l~------~l~~~e~~~~~~e~l~~~gl~~-----------------f~~~~~~~lS-G 317 (358)
T 2rcn_A 262 RLYHFPHGGDVIDSPGVREFGLW------HLEPEQITQGFVEFHDYLGHCK-----------------YRDCKHDADP-G 317 (358)
T ss_dssp EEEECTTSCEEEECHHHHTCCCC------CCCHHHHHHTSGGGGGGTTCSS-----------------STTCCSSSCT-T
T ss_pred EEEEECCCCEecCcccHHHhhhc------CCCHHHHHHHHHHHHHHcCCch-----------------hcCCCcccCC-H
Confidence 23444554433322 44443211 2233456677888999999987 4588999999 9
Q ss_pred hhhhhhhhhccC
Q 018083 265 KQYNQIVATTFN 276 (361)
Q Consensus 265 qrQRvaIArALD 276 (361)
|+||++||+++.
T Consensus 318 ~~~r~ala~gli 329 (358)
T 2rcn_A 318 CAIREAVENGAI 329 (358)
T ss_dssp CHHHHHHHHTSS
T ss_pred HHHHHHHHhcCC
Confidence 999999999983
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-14 Score=126.37 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=31.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhcccccccc---cceeeecccccC
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGD 161 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~---~G~I~i~G~~i~ 161 (361)
++++|+|+||||||||+++|+|+++ |+ .|.|.++|.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-----ERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-----hcCCceEEEEEcCcccc
Confidence 5799999999999999999999999 87 899999998753
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-13 Score=120.62 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=31.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
|++++|+||||||||||+++|++ +.+|.++++|.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--------~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--------QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--------HSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--------ccCCeEEEcccch
Confidence 78999999999999999999986 3468899988665
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-14 Score=129.29 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=26.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..++|++++|+||||||||||+++|+|++.
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999999999998
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.1e-14 Score=137.75 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=54.3
Q ss_pred ccccceee---ecCcceeeccc------cceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc
Q 018083 87 DAKNKILS---YTPGAWIENVG------GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 157 (361)
Q Consensus 87 ei~nl~~~---Y~~~~~~~~l~------~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 157 (361)
++++++|+ |++.. .+++. -++++||.|++|++++|+||||||||||+++|+|+++ |++|.|.++|
T Consensus 137 ~f~~v~f~~~~Y~~~~-~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-----~~~g~I~ie~ 210 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFE-QELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-----FDQRLITIED 210 (361)
T ss_dssp TTSCCCCSCSCCCHHH-HHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-----TTSCEEEEES
T ss_pred CcCccccccccccchh-HHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEECC
Confidence 78899988 85421 12320 0255999999999999999999999999999999999 9999999987
Q ss_pred c
Q 018083 158 S 158 (361)
Q Consensus 158 ~ 158 (361)
.
T Consensus 211 ~ 211 (361)
T 2gza_A 211 V 211 (361)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-13 Score=132.61 Aligned_cols=123 Identities=12% Similarity=-0.030 Sum_probs=74.4
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee---cccccCcceEeEeeeecCCCcceeeeec-CCCC
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDT-RSLS 187 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i---~G~~i~~~~~~~~~~i~~~~~~~~~~d~-r~~i 187 (361)
|++.+|++++|+||||||||||+|+|+|+.+ |++|+|.+ +|++++... +...+ ....+.++.. ....
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~~~~~~g~~~t~~~--~~~~~--~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSEKLQRGRHTTTTA--QLLKF--DFGGYVVDTPGFANL 234 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-------------CCCSC--CEEEC--TTSCEEESSCSSTTC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc-----ccccceecccCCCCCceeee--EEEEc--CCCCEEEECcCCCcc
Confidence 4567899999999999999999999999999 99999999 888765211 11111 1123333332 1223
Q ss_pred cccccc----hHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCch
Q 018083 188 DDASDN----INMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 262 (361)
Q Consensus 188 ~~v~q~----~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LS 262 (361)
++++|+ ..+|+. ++ +|+.++... ...+...++.++|+.++|.+. .++++|.+||
T Consensus 235 ~~~~~~~~~~~~l~~~~~~-~n~~~~~~~----~~~e~~~~v~~~l~~~~L~~~----------------~~~~~~~~ls 293 (301)
T 1u0l_A 235 EINDIEPEELKHYFKEFGD-KQCFFSDCN----HVDEPECGVKEAVENGEIAES----------------RYENYVKMFY 293 (301)
T ss_dssp CCCSSCHHHHGGGSTTSSS-CCCSSTTCC----SSSCSSCHHHHHHHHTSSCHH----------------HHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHhccc-ccCcCCCCc----CCCCCCcHHHHHHHcCCCCHH----------------HHHHHHHHHH
Confidence 444554 335555 66 888876421 124456778899999999632 4689999999
Q ss_pred hh
Q 018083 263 VE 264 (361)
Q Consensus 263 GG 264 (361)
+=
T Consensus 294 e~ 295 (301)
T 1u0l_A 294 EL 295 (301)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-13 Score=136.33 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=36.6
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+++||++.|+.. .+ +++++|+| +|+||||||||||+|+|+|+..
T Consensus 9 ~~~l~~~~l~~~y~~~---~v---l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 9 EGYVGFANLPNQVYRK---SV---KRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp ------CCCCCCTTTT---TC---C-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred cCcEEEEecceeECCE---EE---ecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 3579999999999763 46 55599987 9999999999999999999987
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-13 Score=149.19 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=73.4
Q ss_pred hhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-----------CCCceeecC---
Q 018083 219 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD--- 284 (361)
Q Consensus 219 ~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPt~~L~~--- 284 (361)
++.+++. .+..+||... .+++.+.+|||||+||++||++| ||||++|++
T Consensus 355 ei~~rl~-~L~~vGL~~l----------------~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~ 417 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYL----------------GLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADT 417 (842)
T ss_dssp HHHHHHH-HHHHTTCTTS----------------BTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGH
T ss_pred HHHHHHH-HHHhCCCCcC----------------CccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHH
Confidence 4455555 5778999752 15899999999999999999998 999999753
Q ss_pred -------------CccEEEEEc-CccccccchhhHhh------hhhhhcCCCCccccccCC
Q 018083 285 -------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 -------------g~tvIiiTH-~~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~ 325 (361)
|.|||+|+| .++...||+|+ +| ++|+++..|+++++...+
T Consensus 418 ~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii-~lgpgaG~~~G~iv~~g~~~~~~~~~ 477 (842)
T 2vf7_A 418 EALLSALENLKRGGNSLFVVEHDLDVIRRADWLV-DVGPEAGEKGGEILYSGPPEGLKHVP 477 (842)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEE-EECSSSGGGCCSEEEEECGGGGGGCT
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEE-EeCCCcccCCCEEEEecCHHHHHhch
Confidence 899999999 34556799995 58 799999999999987764
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.6e-13 Score=120.39 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=42.6
Q ss_pred ceeccC-CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 107 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 107 L~~is~-~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
|+++.+ .|++|++++|+||||||||||++.|++... +..|.|.+.+.+.
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-----~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-----RDGDPCIYVTTEE 61 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-----HHTCCEEEEESSS
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEccc
Confidence 444888 899999999999999999999999999988 7888888776543
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.3e-14 Score=139.71 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=39.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceE--EEEEccCCCCcchhhhhhhhhh
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~--vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.+++++ ++.|++. + +++ +||+|++|++ ++|+||||||||||+|+|+|+.
T Consensus 16 ~l~~~~-~~~y~~~---~-L~~---vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 16 TVPLAG-HVGFDSL---P-DQL---VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHH---HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEee-EEEECCe---e-cCC---CceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 578888 8999652 3 555 9999999999 9999999999999999999985
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-13 Score=132.53 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=55.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCc-------eEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT-------TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~G-------e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
.+++.++++..|+.. .+ ++++++.|.+| +.++|+||||||||||+++|++.+.. .+.+++|.+..+
T Consensus 17 ~~lr~~~l~~~~g~~---~~---~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-~~~~~sg~~~~~ 89 (334)
T 1in4_A 17 QFLRPKSLDEFIGQE---NV---KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT-NIHVTSGPVLVK 89 (334)
T ss_dssp CTTSCSSGGGCCSCH---HH---HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC-CEEEEETTTCCS
T ss_pred HHcCCccHHHccCcH---HH---HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEechHhcC
Confidence 468889999989753 45 55599999887 89999999999999999999999821 112788988877
Q ss_pred cccc
Q 018083 157 SSVG 160 (361)
Q Consensus 157 G~~i 160 (361)
+.++
T Consensus 90 ~~~l 93 (334)
T 1in4_A 90 QGDM 93 (334)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-11 Score=121.32 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=42.8
Q ss_pred cceeeecCcceeeccccceeccC-------CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-cceeeecc
Q 018083 90 NKILSYTPGAWIENVGGMTLSDY-------DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNS 157 (361)
Q Consensus 90 nl~~~Y~~~~~~~~l~~L~~is~-------~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G 157 (361)
.++++|-+.. ... |+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...+
T Consensus 93 ~~~iR~~~~~-~~~---l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-----~~~~~~i~t~e 159 (356)
T 3jvv_A 93 GAVFRTIPSK-VLT---MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-----NTKYHHILTIE 159 (356)
T ss_dssp EEEEEEECCS-CCC---TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH-----HHCCCEEEEEE
T ss_pred EEEEEECCCC-CCC---HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc-----CCCCcEEEEcc
Confidence 4555553322 234 444666 678888999999999999999999999998 77 45664433
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.6e-13 Score=128.32 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=41.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
++++++++++| ++|+||||||||||+++|+|... + +.|.++|.++.
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-----~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-----L--NFISVKGPELL 81 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-----C--EEEEEETTTTC
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-----C--CEEEEEcHHHH
Confidence 56699999999 99999999999999999999987 5 68899887764
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.16 E-value=6e-12 Score=123.03 Aligned_cols=76 Identities=11% Similarity=0.102 Sum_probs=54.9
Q ss_pred ceec-cCCCCCceEEEEEccCCCCcchhhhhhhhhh--ccccccccc----ce-eeecccccCcceEeEeeeecCCCcce
Q 018083 107 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASER----AQ-VTYNSSVGDGTYFLQEYTIPRGSNSF 178 (361)
Q Consensus 107 L~~i-s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~--~~~~~~p~~----G~-I~i~G~~i~~~~~~~~~~i~~~~~~~ 178 (361)
|+.+ ++.|++|++++|+||||||||||++.|++.. + |++ |. |++++.+..
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~-----~~~Gg~~G~vi~i~~e~~~----------------- 177 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP-----PEEGGLNGSVIWIDTENTF----------------- 177 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTSCSCEEEEEESSSCC-----------------
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-----hhcCCCCCeEEEEeCCCCC-----------------
Confidence 3335 7899999999999999999999999999998 5 666 57 788775431
Q ss_pred eeeecCCCCcccccchHHHHHHHHhccccc
Q 018083 179 SLYDTRSLSDDASDNINMIKLWIMEGVRHG 208 (361)
Q Consensus 179 ~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~ 208 (361)
.+..+.+++|...++..++.+|+.+.
T Consensus 178 ----~~~~i~~i~q~~~~~~~~v~~ni~~~ 203 (349)
T 1pzn_A 178 ----RPERIREIAQNRGLDPDEVLKHIYVA 203 (349)
T ss_dssp ----CHHHHHHHHHTTTCCHHHHGGGEEEE
T ss_pred ----CHHHHHHHHHHcCCCHHHHhhCEEEE
Confidence 01123445555555555777887754
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6e-12 Score=135.27 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=32.7
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|++|+ ++|++++|+||||||||||+|+|+|+..
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 6679999 9999999999999999999999999864
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-12 Score=140.34 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=71.8
Q ss_pred hhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-----------CCCceeecC----
Q 018083 220 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD---- 284 (361)
Q Consensus 220 ~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPt~~L~~---- 284 (361)
+.+++ +.|..+||... .+++.+.+|||||+||++||++| ||||++|++
T Consensus 481 i~~Rl-~~L~~vGL~~l----------------~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~ 543 (972)
T 2r6f_A 481 IRDRL-GFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDND 543 (972)
T ss_dssp HHHHH-HHHHHHTCTTS----------------BSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred HHHHH-HHhhhCCCCcc----------------ccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHH
Confidence 34444 45788898751 14899999999999999999997 999999763
Q ss_pred ------------CccEEEEEc-CccccccchhhHhh------hhhhhcCCCCccccccCC
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~ 325 (361)
|.|||+|+| .+....||+|+ +| ++|++++.|++++++..+
T Consensus 544 ~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi-~LgpgaG~~gG~iv~~G~~~e~~~~~ 602 (972)
T 2r6f_A 544 RLIATLKSMRDLGNTLIVVEHDEDTMLAADYLI-DIGPGAGIHGGEVVAAGTPEEVMNDP 602 (972)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEE-EECSSSGGGCCSEEEEECTTTTTTCT
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE-EeCCCccCCCCEEEEecCHHHHHhhh
Confidence 899999999 33446799995 58 899999999999987754
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-11 Score=121.66 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=40.7
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-cceeeeccccc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVG 160 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G~~i 160 (361)
|++++ +++|++++|+||||||||||+++|+|+++ |+ +|.|.+.+.++
T Consensus 128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~-----~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPI 175 (372)
T ss_dssp HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH-----HHSCCEEEEEESSC
T ss_pred HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC-----cCCCcEEEEecccH
Confidence 44454 89999999999999999999999999999 87 89998777544
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-11 Score=123.12 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=46.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
|+++||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCTTSC
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEEcc
Confidence 6669999999 9999999999999999999999999 99999999998875
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-11 Score=129.74 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=30.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|+||+ |++++|+||||||||||+|+|+|+..
T Consensus 569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 5669999 99999999999999999999999874
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.9e-11 Score=107.34 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=38.0
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhccccccc---ccceeeecccccC
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVGD 161 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p---~~G~I~i~G~~i~ 161 (361)
.++|++++|+||||||||||+++|+|+++ | ..|.|.++|..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~-----~~g~~~g~v~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS-----AQGLPAEVVPMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH-----HTTCCEEEEESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCceEEEecCCCcCC
Confidence 58899999999999999999999999998 5 4788888886653
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-11 Score=116.41 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=56.6
Q ss_pred hccccccccceeeecCcceeeccccceeccCCC-------------------CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV-------------------PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I-------------------~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
...+|++++|++.|+ ++ +++++|.+ .+|+++||+||||||||||+++|+|++.
T Consensus 34 ~~~~i~~~~v~~~y~-----~~---~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 34 INEDLSLEEVAEIYL-----PL---SRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp HCTTCCHHHHHHTHH-----HH---HHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CccccchHhHHHHHH-----HH---HHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345799999999994 34 56699988 9999999999999999999999999985
Q ss_pred ccccccccceeee---ccccc
Q 018083 143 NDKFASERAQVTY---NSSVG 160 (361)
Q Consensus 143 ~~~~~p~~G~I~i---~G~~i 160 (361)
.. |++|+|.+ +|...
T Consensus 106 ~~---~~~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 106 RW---PEHRRVELITTDGFLH 123 (308)
T ss_dssp TS---TTCCCEEEEEGGGGBC
T ss_pred hC---CCCCeEEEEecCCccC
Confidence 11 57899999 77553
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-12 Score=123.38 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=27.6
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee---cccccC
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGD 161 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i---~G~~i~ 161 (361)
+++.+|++++|+||||||||||+|+|+|+.+ |.+|+|.+ +|+..+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~~~~~~G~~tt 215 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISEHLGRGKHTT 215 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------C
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-----ccccceeeecCCCcccc
Confidence 7788999999999999999999999999999 99999998 777654
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-10 Score=101.50 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=48.8
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCccc
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA 190 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v 190 (361)
|+++++|++++|+||||||||||+++|+|++ | .+.+.+..+.. ......+..++++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~------~---~~~~~~~~~~~---------------~~~~~~~~~~~~~ 56 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL------A---EIKISISHTTR---------------PKRPGDQEGVDYF 56 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS------S---SEEECCCEECS---------------CCCTTCCBTTTBE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC------C---CeEEeceeccC---------------CCchhHhcCceEE
Confidence 5778899999999999999999999999996 3 35555544320 0001123457889
Q ss_pred ccchHHHHH-HHHhcccc
Q 018083 191 SDNINMIKL-WIMEGVRH 207 (361)
Q Consensus 191 ~q~~~l~~~-ti~~ni~~ 207 (361)
+|++..+.. ++.+++.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 57 FIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ECCHHHHHHHHHHTCEEE
T ss_pred eccHHHHHHHHhcCcEEe
Confidence 999888777 55566544
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-10 Score=109.26 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=27.9
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.|++|++++|+||||||||||++.|++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999999999765
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-10 Score=105.25 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=52.8
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc--ccceeeecccccCcceEeEeeeecCCCcceeeeecCCCC
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS 187 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p--~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i 187 (361)
-.-..++|++++|+||||||||||+++|+|+++ | ..|.|.+.+.+.. . ..+..+
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-----p~~~~g~v~~ttr~~~---------------~----~e~~gi 64 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-----LYDTQVSVSHTTRQPR---------------P----GEVHGE 64 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSC-----TTTEEECCCEECSCCC---------------T----TCCBTT
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCC-----CCceEEEEEecCCCCC---------------c----ccccCc
Confidence 444679999999999999999999999999998 6 6788888775432 0 113457
Q ss_pred cccccchHHHHH-HH----Hhcccc
Q 018083 188 DDASDNINMIKL-WI----MEGVRH 207 (361)
Q Consensus 188 ~~v~q~~~l~~~-ti----~~ni~~ 207 (361)
+|+||+..+|.. ++ .+++.+
T Consensus 65 ~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 65 HYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp TBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred eEEECCHHHHHHHHhcCHHHHHHHH
Confidence 889999988877 55 355543
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=8.4e-11 Score=101.62 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=45.0
Q ss_pred hhhccCCchhhhhhhhhhh------hcc---------CCCceeecC----------------CccEEEEEc-Cccccccc
Q 018083 254 LKSMEGDSDVEKQYNQIVA------TTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTD 301 (361)
Q Consensus 254 ~~~~~~~LSGGqrQRvaIA------rAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aD 301 (361)
.++++.+||||||||++|| ||| ||||++||. |.|||++|| ..+..+||
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d 130 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 130 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCC
Confidence 3678999999999999886 666 999999753 789999999 55678899
Q ss_pred hhhHhhh
Q 018083 302 RARIRTY 308 (361)
Q Consensus 302 ri~vvl~ 308 (361)
+++ +|+
T Consensus 131 ~ii-~l~ 136 (148)
T 1f2t_B 131 HVI-RIS 136 (148)
T ss_dssp EEE-EEE
T ss_pred EEE-EEE
Confidence 995 474
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-10 Score=114.68 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=32.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-++++|+++.|+.++|+|+||||||||+++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 45699999999999999999999999999999984
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=7.6e-11 Score=108.76 Aligned_cols=60 Identities=22% Similarity=0.264 Sum_probs=47.1
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
.+++++.+.|+.. .+ ++++++++++| ++|+||||||||||+++|++... .|.+.+++.++
T Consensus 26 ~~l~~l~~~~~~~---~~---~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~ 85 (254)
T 1ixz_A 26 EELKEIVEFLKNP---SR---FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 85 (254)
T ss_dssp HHHHHHHHHHHCH---HH---HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHHHHHHHHHCH---HH---HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHH
Confidence 3455666666432 34 55699999999 99999999999999999999875 57788877654
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.91 E-value=7.7e-11 Score=112.49 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=26.9
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-.++.+++|+||+|||||||+++|.+++.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35678999999999999999999999998
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.91 E-value=8.3e-11 Score=106.75 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=35.7
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhh--hhccccccc-----ccceeeecccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFAS-----ERAQVTYNSSV 159 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~g--l~~~~~~~p-----~~G~I~i~G~~ 159 (361)
-|++|++++|+||||||||||++.|++ +.+ | ..|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-----~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP-----IDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC-----GGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc-----hhcCCCCCeEEEEECCC
Confidence 689999999999999999999999999 454 4 46778887755
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.90 E-value=7.4e-11 Score=110.67 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=46.4
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
+++++.+.|+.. .+ ++++++++++| ++|+||||||||||+++|++... .|.|.+++.++
T Consensus 51 ~l~~l~~~~~~~---~~---l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~ 109 (278)
T 1iy2_A 51 ELKEIVEFLKNP---SR---FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 109 (278)
T ss_dssp HHHHHHHHHHCH---HH---HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHHHHHHHHCH---HH---HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-------CCEEEecHHHH
Confidence 345555556432 34 56699999999 89999999999999999999885 57888887654
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.8e-11 Score=111.57 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=35.6
Q ss_pred CceEEEEEccCCCCcchhhhhhh---hhhcccccccccceeeecccc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~---gl~~~~~~~p~~G~I~i~G~~ 159 (361)
++++++|+||||||||||+++|+ |+.. |+.|+|.++|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-----~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-----LSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-----EEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-----ecHHHHHHHHHh
Confidence 36899999999999999999999 9988 999999988754
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.1e-10 Score=101.36 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=35.0
Q ss_pred ceeccC-CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc
Q 018083 107 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 157 (361)
Q Consensus 107 L~~is~-~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 157 (361)
|+.+.. .|++|++++|+||||||||||++.|++ . +..+.++++.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-----~~~~v~~i~~ 53 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-----SGKKVAYVDT 53 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-----HCSEEEEEES
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-----cCCcEEEEEC
Confidence 344665 799999999999999999999999999 4 4445555544
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.2e-10 Score=101.41 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=22.9
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhh-hhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~-gl~~ 142 (361)
.+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 55699999999999999999999999999999 9986
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-09 Score=102.24 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=34.9
Q ss_pred cccccccc-eeeecCcceeeccccceeccCCCCC---ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 84 SLTDAKNK-ILSYTPGAWIENVGGMTLSDYDVPK---TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 84 ~~lei~nl-~~~Y~~~~~~~~l~~L~~is~~I~~---Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++++++|+ +++|++. .++ |+++||+|.+ |++++|+|++||||||++++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~--~~~---l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE--QQI---LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ------------------CHH---HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCc--chh---hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57999999 9999332 256 5669999999 99999999999999999999999765
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.6e-10 Score=105.24 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=41.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.|+++|++..|+. +|++.+ ++++|+||||||||||+++|+|++. |++|+|.++|.++.
T Consensus 9 ~l~l~~~~~~~~~-------------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~~~~ 66 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTTEA 66 (227)
T ss_dssp EEEEEEETTEEEE-------------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC--------
T ss_pred EEEEEeeecccCC-------------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCEEcc
Confidence 4778887765521 233445 7999999999999999999999999 99999999998864
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.5e-09 Score=106.51 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=34.0
Q ss_pred CCCCceEEEEEccCCCCcchhhhh--hhhhhcccccccccc-----eeeecccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERA-----QVTYNSSV 159 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~--I~gl~~~~~~~p~~G-----~I~i~G~~ 159 (361)
-|++|++++|+||||||||||++. +.++.+ ++.| .+++++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p-----~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP-----LDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC-----cccCCCCCcEEEEeCCC
Confidence 689999999999999999999994 456666 5444 77777755
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.3e-09 Score=94.92 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=44.3
Q ss_pred hhhhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cccccccchh
Q 018083 253 VLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 253 ~~~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri 303 (361)
...+.+..||||||||++||++| |||+++||+ +.++|+||| ......||++
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i 136 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKI 136 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEE
Confidence 44677889999999999999987 999999763 678999999 5566889999
Q ss_pred h
Q 018083 304 R 304 (361)
Q Consensus 304 ~ 304 (361)
+
T Consensus 137 ~ 137 (173)
T 3kta_B 137 I 137 (173)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=5.8e-09 Score=92.98 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=44.8
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee--eecccccC
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV--TYNSSVGD 161 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I--~i~G~~i~ 161 (361)
+|++.+++. +.+.+ ..++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~---~~~~~---~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS---VEKVD---RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC---CCHHH---HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHHHHT
T ss_pred CCCcccccc---cCHHH---HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCchhh
Confidence 456665544 35544 4899999999999999999999999999999996 46887 88887664
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-08 Score=97.93 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=41.5
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
++++..+|++++|+|||||||||+++.|++++. +..|+|.+.+.|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-----~~g~kV~lv~~D~ 142 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-----DEGKSVVLAAADT 142 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-----hcCCEEEEEcccc
Confidence 677788999999999999999999999999999 8888998877664
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.55 E-value=8.5e-09 Score=105.68 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=44.5
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
++++++.|++|+.++|+||||||||||+++|+|+++ |++|.|.+.|..
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-----~~~giitied~~ 297 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-----PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEEESSC
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-----CCCCEEEEcCcc
Confidence 445999999999999999999999999999999999 999999999865
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.7e-08 Score=86.67 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=35.4
Q ss_pred eeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee
Q 018083 108 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 154 (361)
Q Consensus 108 ~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~ 154 (361)
++++|++.+| +.+|+||||||||||+++|.+++. +..|...
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~-----~~~~~~~ 58 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG-----GLSAKAM 58 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT-----CCCTGGG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc-----CCccccc
Confidence 4588999999 999999999999999999999998 6555443
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.8e-08 Score=88.82 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=24.2
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999985
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.5e-08 Score=87.85 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=32.4
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.++.++|++++|+||||||||||+++|++.+ |.+.+++.++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~~~ 64 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET---------GLEFAEADAFH 64 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH---------CCEEEEGGGGS
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---------CCeEEcccccc
Confidence 4567889999999999999999999999976 56778776653
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.5e-08 Score=85.44 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=27.3
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|++|++++|+||||||||||+++|++++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4789999999999999999999999999997
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=3.9e-08 Score=100.71 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=40.1
Q ss_pred eccCCCCCceEEEEEccCCCCcchhhhhhhh--hhcccccccccceeeecccccC
Q 018083 109 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 109 ~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g--l~~~~~~~p~~G~I~i~G~~i~ 161 (361)
-+.+++.++..++|.|++||||||++++|.. ++. ++.+++.+.+.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-----~~p~~v~l~liDpK 208 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-----AQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-----CCTTTEEEEEECCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-----CCCceEEEEEECCc
Confidence 3778888999999999999999999999876 455 66788888777754
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.40 E-value=7.5e-08 Score=92.35 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=27.5
Q ss_pred eEEEEEccCCCCcchhhhhhhh-hhcccccccccceeeeccccc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~g-l~~~~~~~p~~G~I~i~G~~i 160 (361)
..++|.||+|+|||||+++|++ ++. |+.|.+.++|.+.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~-----~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFG-----PGVYRLKIDVRQF 75 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSC-----TTCCC--------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcC-----CCCCeEEecceee
Confidence 3489999999999999999999 777 8899999988664
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.8e-08 Score=100.59 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=45.2
Q ss_pred hhccCCc-hhhhhhhhhhhhcc-----------CCCceeecC---------------CccEEEEEc-CccccccchhhHh
Q 018083 255 KSMEGDS-DVEKQYNQIVATTF-----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIR 306 (361)
Q Consensus 255 ~~~~~~L-SGGqrQRvaIArAL-----------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~vv 306 (361)
.+++..| ||||+||++||||| ||||++||. +.|||+||| ..++..||+++ +
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~-~ 469 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHY-K 469 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEE-E
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE-E
Confidence 3567788 99999999999987 999999764 889999999 34556799996 5
Q ss_pred hhhh
Q 018083 307 TYLG 310 (361)
Q Consensus 307 l~~G 310 (361)
|+++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 8655
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.37 E-value=1e-07 Score=84.77 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=25.7
Q ss_pred eecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 94 SYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 94 ~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|.++....+ ++++||++++|.+++|+||+||||||+.+.|++.+.
T Consensus 5 ~~~~~~~~~~---~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 5 HHHSSGVDLG---TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----------------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCCCCCC---CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4554443345 556999999999999999999999999999998774
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.3e-08 Score=89.38 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=38.0
Q ss_pred CCceEEEEEccCCCCcchhhhhhh---hhhcccccccccceee--------eccccc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVT--------YNSSVG 160 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~---gl~~~~~~~p~~G~I~--------i~G~~i 160 (361)
++|++++|+|||||||||++++|+ |+.. +++|.++ .+|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-----~d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL-----LDSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-----EEHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-----CCCCceehHhHHHHHHcCCCc
Confidence 789999999999999999999999 9888 9999999 777765
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-07 Score=89.87 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=52.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+.++++++.|+.. .++++|+ +|++++|+|+|||||||++..|++++. +..|+|.+.+.+..
T Consensus 77 ~~~~~l~~~~~~~--------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-----~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (295)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-----HTTCCEEEEECCSS
T ss_pred HHHHHHHHHHCCC--------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEecCCcc
Confidence 5678888888642 1338888 899999999999999999999999999 88899999988764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-07 Score=82.13 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=30.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhccccccc-ccceeeec
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYN 156 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p-~~G~I~i~ 156 (361)
.+|++++|+||||||||||+++|.+.++ + ..|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~-----~~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP-----DRFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT-----TTEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC-----ccEEEeeecc
Confidence 3689999999999999999999999986 3 45666543
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-07 Score=82.96 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=39.0
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
...++|++++|+|+||||||||+++|++++. +..|.|.+.+.+.
T Consensus 17 ~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~-----~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 17 IKTAGRLVLGIDGLSRSGKTTLANQLSQTLR-----EQGISVCVFHMDD 60 (201)
T ss_dssp SCCSSSEEEEEEECTTSSHHHHHHHHHHHHH-----HTTCCEEEEEGGG
T ss_pred hccCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCeEEEeccCc
Confidence 3568899999999999999999999999998 8888988877664
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-07 Score=95.91 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=39.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
++++++++++| ++|+||+|||||||+++|++... .+-+.+++.++.
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~~ 101 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFV 101 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGGT
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHHH
Confidence 55599999999 89999999999999999999875 467788776653
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.8e-07 Score=81.50 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=32.8
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 151 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G 151 (361)
+|++++|+.++|+||||||||||+++|++.+. |.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-----EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-----HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-----HHcC
Confidence 56778899999999999999999999999998 7766
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-07 Score=87.94 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=45.4
Q ss_pred eeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 108 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 108 ~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
++++|++++|++++|+|||||||||++..|++.+. +..|+|.+.+.|..
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-----~~g~kVllid~D~~ 144 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-----ELGYKVLIAAADTF 144 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEeCCCc
Confidence 45999999999999999999999999999999999 88899999888764
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.9e-07 Score=76.98 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=33.1
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhcccccccccc--eeeeccccc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 160 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G--~I~i~G~~i 160 (361)
+|+.++|+||||||||||+++|++.+. + +| .+++++.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~-~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-----E-AGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-----T-TTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-----h-cCCcEEEEcHHHh
Confidence 899999999999999999999999997 5 46 566665443
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.9e-07 Score=90.61 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=55.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
.+++.+++.+.|+.. .+ ++++++.+.+|.+++|+|++|||||||++.|++.+. +..++|.+-+.+.
T Consensus 29 ~~ie~~~~~~~~~~~---~~---~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-----~~~~~v~v~~~d~ 94 (341)
T 2p67_A 29 TLVESRHPRHQALST---QL---LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-----REGLKVAVIAVDP 94 (341)
T ss_dssp HHHHCCCHHHHHHHH---HH---HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECC
T ss_pred hHhhcCCchhhhHHH---HH---HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEEeecC
Confidence 367888888887542 45 555999999999999999999999999999999998 7788888776655
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.22 E-value=7.2e-08 Score=93.27 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=44.3
Q ss_pred ccceeeecCcceeeccccceeccCCCCCce------EEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTT------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge------~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
+.+++.|+.. ++ |++++..+.++. ++||+||||||||||+++|.+++... |+.|.+.+-+.+
T Consensus 64 rll~~~~~~~---~~---l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~---~~~~~v~~i~~D 131 (321)
T 3tqc_A 64 RLLSFYVTAR---QT---LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW---PDHPNVEVITTD 131 (321)
T ss_dssp HHHHHHHHHH---HH---HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS---TTCCCEEEEEGG
T ss_pred HHHHHhhcch---HH---HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc---CCCCeEEEEeec
Confidence 4455566543 44 444777777766 99999999999999999999999721 356665544443
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=6.2e-07 Score=81.70 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=36.5
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
-+.+.++|++++|+|+||||||||+++|+++ .|+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY---------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG---------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc---------cCCeEEEecCH
Confidence 5567899999999999999999999999987 37788887764
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-06 Score=85.27 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=42.9
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhh--hhcccccccccceeeecc
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNS 157 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g--l~~~~~~~p~~G~I~i~G 157 (361)
+++++...|+......+ |++++++++ .++|+|++|||||||+++|.| +++ +.+|.+.-..
T Consensus 10 ~l~~~~~~~~~~~~~~~---l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp-----~~~~~vT~~p 71 (360)
T 3t34_A 10 KIQRACTALGDHGDSSA---LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP-----RGSGIVTRRP 71 (360)
T ss_dssp HTTTTTTSCSSCCSSCC---C----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC-----CCSSSCCCSC
T ss_pred HHHHHHHhhCccccccc---cccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC-----CCCCcccCcc
Confidence 57788888875322245 555999998 899999999999999999999 556 6666665443
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-06 Score=76.94 Aligned_cols=43 Identities=26% Similarity=0.313 Sum_probs=33.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhccccccc------ccceeeeccccc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 160 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p------~~G~I~i~G~~i 160 (361)
-.++|+|+||||||||+++++|......+.| ++|.|.++|.++
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 4789999999999999999999876221112 578888887654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.12 E-value=1e-07 Score=93.39 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=34.9
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee-eeccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNSS 158 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I-~i~G~ 158 (361)
-|++|+++.|.||+|||||||+..++.... +..|.+ ++++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~-----~~gg~VlyId~E 98 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ-----KMGGVAAFIDAE 98 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEEEESS
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeEEEEecc
Confidence 588999999999999999999999999987 666766 44443
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.4e-06 Score=78.19 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=26.8
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|++++|+||||||||||+++|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6799999999999999999999999987
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.08 E-value=1.2e-06 Score=87.17 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=42.5
Q ss_pred hccCCchhhhhhhhhhhhcc-------------CCCceeecC----------------CccEEEEEc-CccccccchhhH
Q 018083 256 SMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 305 (361)
Q Consensus 256 ~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~v 305 (361)
+.+..||||||||++||++| |||+++||. +.++|++|| ......||++++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEE
Confidence 44567999999999999987 999999753 579999999 455678999954
Q ss_pred hhh
Q 018083 306 RTY 308 (361)
Q Consensus 306 vl~ 308 (361)
+.
T Consensus 409 -~~ 410 (430)
T 1w1w_A 409 -VY 410 (430)
T ss_dssp -EE
T ss_pred -EE
Confidence 54
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.08 E-value=8.7e-07 Score=87.46 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=33.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|+++++.+++|++++|+||||||||||+++|++.+.
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 555999999999999999999999999999998664
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.06 E-value=7.1e-07 Score=92.25 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=38.1
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc-eee-eccccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVT-YNSSVG 160 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G-~I~-i~G~~i 160 (361)
.+++|++++|+|+||||||||+++|++.+. |++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-----~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-----EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-----TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-----ccCCceEEEECCcHH
Confidence 678999999999999999999999999998 8886 674 777654
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-06 Score=85.04 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=48.9
Q ss_pred hccccccccceeeecCcceeeccccce--------------eccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMT--------------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~--------------~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
...-++++||++.|+... .. |+ |+.+.|.+|+.++|+||+|||||||++.|++...
T Consensus 130 ~~~ri~Fe~ltp~yP~er--~~---Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 130 ARNKILFENLTPLHANSR--LR---MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HTTSCCTTTSCEESCCSB--CC---CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCCCc--cc---cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 455689999999998754 33 66 6999999999999999999999999999999875
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.3e-06 Score=73.76 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=31.0
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---------CcEEEeCccc
Confidence 578999999999999999999999875 4566766554
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=2.4e-06 Score=75.09 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=30.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhhccccccc------ccceeeeccccc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 160 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p------~~G~I~i~G~~i 160 (361)
.++|+|+||||||||+++|+|......+.| ..|.|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 589999999999999999999753111112 357788877554
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.02 E-value=6.3e-07 Score=89.29 Aligned_cols=45 Identities=33% Similarity=0.468 Sum_probs=36.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|+++|+ ++|++ .. ++++.+|++++|+||||||||||+++|++++.
T Consensus 7 l~~~~~-~~~~~---------~~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 7 LELSNF-KSYRG---------VT--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEESC-SSCCS---------EE--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEeCE-EEECC---------ce--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 677888 67754 11 13467789999999999999999999999987
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.98 E-value=2.6e-06 Score=84.48 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=36.9
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc----cc---ccccccceeeecccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE----ND---KFASERAQVTYNSSV 159 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~----~~---~~~p~~G~I~i~G~~ 159 (361)
.+++|..++|+|+||||||||+|+|+|... .. ...|+.|.|.+.|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r 69 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDER 69 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcc
Confidence 678999999999999999999999999211 00 012889999988744
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.7e-06 Score=77.60 Aligned_cols=37 Identities=16% Similarity=0.380 Sum_probs=30.6
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
+.+++|+||+||||||++++|++.+. ...++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g--~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ--WHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCcccCcceee
Confidence 46899999999999999999999872 11178898877
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=97.95 E-value=1.5e-06 Score=87.34 Aligned_cols=49 Identities=10% Similarity=0.128 Sum_probs=40.3
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc-eeeeccccc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVG 160 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G~~i 160 (361)
|+++..-+++|+++.|.|++|+|||||+..|++... +..| .|.+.+.+.
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-----~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-----TKTNENVAIFSLEM 242 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-----HHSSCCEEEEESSS
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----HhCCCcEEEEECCC
Confidence 555888899999999999999999999999999886 5555 676665443
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.9e-06 Score=90.84 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=34.8
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
+++++++..++|+|++|||||||+++|.+....- +..|+| .+|..+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~---~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK---ERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS---SSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC---Ccccee-cCCccc
Confidence 4678999999999999999999999999877511 367887 555443
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.92 E-value=3.6e-06 Score=75.90 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=27.1
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|+...+|++++|+||||||||||+++|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45556899999999999999999999999875
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.8e-06 Score=84.50 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=40.4
Q ss_pred hccCCchhhhhhhhhh------hhcc----------CCCceeecC---------------CccEEEEEc-Cccccccchh
Q 018083 256 SMEGDSDVEKQYNQIV------ATTF----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 256 ~~~~~LSGGqrQRvaI------ArAL----------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri 303 (361)
.++..|||||+||++| |++| |||+++||. +.+||++|| ..+..+||++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~ 355 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVI 355 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEE
Confidence 5667899999999854 4543 999999753 458999999 4567889999
Q ss_pred hHhhh
Q 018083 304 RIRTY 308 (361)
Q Consensus 304 ~vvl~ 308 (361)
+ +++
T Consensus 356 ~-~l~ 359 (371)
T 3auy_A 356 I-NVK 359 (371)
T ss_dssp E-EEE
T ss_pred E-EEE
Confidence 5 465
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.87 E-value=5.3e-06 Score=79.16 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=50.1
Q ss_pred ccccceeeecCcceeecccccee-ccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 87 DAKNKILSYTPGAWIENVGGMTL-SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~-is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
-.+++...|++. .++ ++|+++ +.+++++|++|+||||++..|++.+. +..++|.+.+.+..
T Consensus 76 ~~~~l~~~~~~~--------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-----~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 76 VYDELSNLFGGD--------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-----KKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHHTTCS--------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred HHHHHHHHhccc--------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEecCCC
Confidence 356677777653 345 888877 99999999999999999999999998 88889998887754
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.85 E-value=4.3e-06 Score=71.72 Aligned_cols=27 Identities=26% Similarity=0.692 Sum_probs=24.7
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.|.+++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999999886
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=7.4e-06 Score=79.69 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=37.1
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+++.+++|+|++|||||||+|.|.|.+. +..|.|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-----~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-----ERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-----hcCCeEEEEeecCC
Confidence 4578999999999999999999999998 88899988887654
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=6.7e-06 Score=78.35 Aligned_cols=41 Identities=15% Similarity=0.404 Sum_probs=35.7
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccc-eeeeccccc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVG 160 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G~~i 160 (361)
.+|++++|+|||||||||+++.|++.+. +++| .|.+-+.|.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-----~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-----LEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-----HhcCCEEEEEecCc
Confidence 5789999999999999999999999998 7778 777766554
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=7.3e-06 Score=71.09 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=32.7
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccc--eeeeccccc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 160 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G--~I~i~G~~i 160 (361)
++|++++|+|++||||||++++|++.+. + .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-----~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-----C-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-----H-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-----h-CCCcEEEECChHH
Confidence 4689999999999999999999999987 5 46 566666544
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.81 E-value=2.6e-06 Score=87.71 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=48.1
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 158 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 158 (361)
.-++++...|.. ..+ +.++++++ +|+.++|+||+|||||||+++|++.+. +..|.|.+.|.
T Consensus 84 ~G~~~vk~~i~~---~~~---l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~ 144 (543)
T 3m6a_A 84 HGLEKVKERILE---YLA---VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGV 144 (543)
T ss_dssp SSCHHHHHHHHH---HHH---HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC-
T ss_pred ccHHHHHHHHHH---HHH---HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEeccc
Confidence 334556666643 235 44599999 899999999999999999999999998 88888888764
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=7.1e-06 Score=72.84 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=29.5
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+--++++|.+++|+|++|||||||+++|.+.++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 444789999999999999999999999999874
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.75 E-value=1.4e-05 Score=73.06 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=31.8
Q ss_pred ceeccCCCC---CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 107 MTLSDYDVP---KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 107 L~~is~~I~---~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
|.++||.+. +|.+++|.||+||||||+++.|...+. + .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-----~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-----K-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-----T-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-----c-CCCceee
Confidence 555777776 999999999999999999999999998 6 4555443
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=1.1e-05 Score=72.20 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=38.8
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc--eeeeccccc
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 160 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G--~I~i~G~~i 160 (361)
.+.+++|.+++|+|++||||||+++.|.+.+. |..| .+.+++..+
T Consensus 19 ~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-----~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 19 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLV-----RDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-----HHHCCCEEEECHHHH
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-----cccCCcEEEECChHH
Confidence 35678999999999999999999999999998 7888 778876544
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.74 E-value=1e-05 Score=80.94 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=49.2
Q ss_pred cccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 88 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 88 i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++++.|++. -++++|+ ++++++++|++||||||++..|++.+. +..+.|.+.+.|..
T Consensus 79 ~~~L~~~~~~~--------~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-----~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 79 YEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEECCSS
T ss_pred HHHHHHHhCCC--------cccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEeecccc
Confidence 45677788653 1238888 889999999999999999999999999 88889999887764
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.2e-05 Score=68.76 Aligned_cols=31 Identities=35% Similarity=0.456 Sum_probs=25.5
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 44455566 89999999999999999998655
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.65 E-value=2.3e-05 Score=76.74 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=21.2
Q ss_pred ceE-EEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTS-LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~-vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|-. ++|+|++|||||||+|+|+|...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 444 99999999999999999998764
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.64 E-value=5.5e-06 Score=86.19 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=49.6
Q ss_pred cccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccc-ceeeecccccC
Q 018083 88 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSVGD 161 (361)
Q Consensus 88 i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~-G~I~i~G~~i~ 161 (361)
-++++.-|+.. .+ ++++++.+.+|+.++|+||||||||||+++|+++++ +.. |.+.+++....
T Consensus 37 p~~l~~i~G~~---~~---l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 37 EKLIDQVIGQE---HA---VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-----TETLEDILVFPNPED 100 (604)
T ss_dssp SSHHHHCCSCH---HH---HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-----CSSCEEEEEECCTTC
T ss_pred ccccceEECch---hh---HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-----cccCCeEEEeCCccc
Confidence 34444456543 45 455999999999999999999999999999999998 666 77777776543
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.60 E-value=1e-05 Score=82.58 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=31.4
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++++|++.+| +.+|+|+||||||||+.+|..++.
T Consensus 51 ~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp BSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred eeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 55699999999 999999999999999999988743
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.55 E-value=3.8e-05 Score=66.90 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=33.8
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee-eecc
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNS 157 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I-~i~G 157 (361)
-+...+|.+++|+|++||||||+++.|+..+. +..+.+ .+++
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~~~~~~~~~ 49 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ-----KEGYRVEVLDG 49 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEeeH
Confidence 34557899999999999999999999999997 666665 3444
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=2.6e-05 Score=68.65 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=28.4
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
+++++|..++. .++|+|++|||||||++.+.+
T Consensus 16 l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 55599999988 578999999999999999976
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=4.1e-05 Score=66.94 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=26.9
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
+|++.+++..++|+|++||||||+.+.|+..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999999999876
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.44 E-value=3.2e-05 Score=69.59 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=28.1
Q ss_pred ceec-cCCCCCceEEEEEccCCCCcchhhhhh-hhhhc
Q 018083 107 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRI-SKVFE 142 (361)
Q Consensus 107 L~~i-s~~I~~Ge~vaLvGpnGSGKSTLl~~I-~gl~~ 142 (361)
|+.+ .--+++|++++|+||||||||||+..+ ..+.+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3335 567999999999999999999996655 44444
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.41 E-value=4.4e-05 Score=67.74 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=26.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
...+|.+++|+||||||||||++.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456789999999999999999999988775
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=4.8e-05 Score=67.22 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
+++|+||+||||||+.++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=5.1e-05 Score=68.00 Aligned_cols=32 Identities=34% Similarity=0.414 Sum_probs=26.3
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++++.+| +.+|+|||||||||++.+|.-++.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44556666 899999999999999999976664
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.37 E-value=7.4e-05 Score=65.16 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=20.5
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
+++++++.++. .++|+|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 55699998887 788999999999999999987
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.29 E-value=7.6e-05 Score=65.76 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=20.2
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
+++|+|++||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.28 E-value=8.3e-05 Score=63.89 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.2
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
++|..++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999864
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.26 E-value=2.2e-05 Score=75.31 Aligned_cols=49 Identities=24% Similarity=0.299 Sum_probs=38.9
Q ss_pred cccceeeecCcceeeccccceeccCCCCCceE--EEEEccCCCCcchhhhhhhhhhc
Q 018083 88 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 88 i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~--vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-++++..|+.. .+ ++.++..|..|++ +.|.||+|+||||+++++++.+.
T Consensus 21 p~~~~~~~g~~---~~---~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 21 PETLDEVYGQN---EV---ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CSSGGGCCSCH---HH---HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCcHHHhcCcH---HH---HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 34555556542 45 4448888999988 99999999999999999999986
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00012 Score=62.79 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|++|+|||||++.|.+-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999884
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00011 Score=69.65 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.1
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++.+++|+|++|||||||+|.|.|..
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3455689999999999999999999864
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=3.5e-05 Score=75.21 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=34.2
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.+.+++..|+.. .+ +++++|+| +|+|++|+|||||+++|.+...
T Consensus 16 ~~v~~~~l~~~~~~k---~~---~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 16 GYVGFANLPNQVHRK---SV---KKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp -----CCHHHHHHTH---HH---HHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred ceEEeccchHHhCCe---ee---cCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 468899999998753 34 44488876 9999999999999999987654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00013 Score=72.75 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=30.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhcc-------cccccccceeeecccc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFEN-------DKFASERAQVTYNSSV 159 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~~-------~~~~p~~G~I~i~G~~ 159 (361)
-.++|+|++|||||||+|+|.|.... ....+..|.+.++|.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 48999999999999999999997530 0001456777777754
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00013 Score=64.34 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+++|+|++|||||||++.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00015 Score=71.85 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=33.5
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc------ccccccccceeeeccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE------NDKFASERAQVTYNSS 158 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~------~~~~~p~~G~I~i~G~ 158 (361)
.+..+..++|+|++|+|||||+|+|.|.-. .....|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 667788999999999999999999999711 0001167788887664
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00016 Score=70.50 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=27.4
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
+++..+++.+| +.+|+|||||||||++.+|.=
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 44577777886 899999999999999999974
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00021 Score=65.77 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=32.8
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
...++.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-------~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-------GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-------TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-------CCcEEEecHHH
Confidence 567788999999999999999999998875 24566666444
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00016 Score=62.41 Aligned_cols=27 Identities=22% Similarity=0.613 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999998654
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=8.9e-05 Score=72.55 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=32.8
Q ss_pred ceeccCCCCCceE--EEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~--vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.+++.+++|++ ++|+||+||||||+.++|++.+.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4559999999998 99999999999999999999876
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0002 Score=62.97 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=28.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 157 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 157 (361)
.+++|+|++|||||||++.|.+.+.... ..-|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g--~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC--CceeEEeeCC
Confidence 5799999999999999999999876111 1235555544
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00018 Score=65.81 Aligned_cols=34 Identities=29% Similarity=0.537 Sum_probs=25.9
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.+++.+++| ++|+||+|+|||||+++|++.+.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 33466677777 88999999999999999999875
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00018 Score=61.05 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.6
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|++|+|||||++.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0002 Score=60.61 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.9
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|+|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988764
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00047 Score=59.74 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.1
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|++|||||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999876553
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00022 Score=61.54 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|++|||||||++.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998643
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00029 Score=63.93 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=29.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 154 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~ 154 (361)
+-++|.+++|+|++||||||+.+.|++.+. ...++.|.+.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg--~~~~d~d~~~ 51 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFG--FTYLDTGAMY 51 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHC--CEEEEHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcC--CceecCCCee
Confidence 457788999999999999999999998543 1115556554
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00017 Score=63.65 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=22.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|.|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00017 Score=66.46 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=26.1
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhccccccccccee
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 153 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I 153 (361)
.-+++|+||+||||||+.+.|+..+.-. ..+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~--~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGAR--YLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCE--EEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC--cccCCcH
Confidence 3489999999999999999999655311 1455555
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00032 Score=60.10 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.4
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998775
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00044 Score=59.64 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.5
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.++..+.|+|++||||||+.+.|+..+.
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 445678899999999999999999986654
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00047 Score=59.64 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=24.4
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999987553
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00045 Score=60.12 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=22.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|+|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999765
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00041 Score=58.35 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=18.2
Q ss_pred EEEEEccCCCCcchhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRI 137 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I 137 (361)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00041 Score=67.35 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=31.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|+.+.--+++|+++.|.|++|+|||||+..++....
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 444666799999999999999999999998887665
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00048 Score=59.28 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999988664
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00056 Score=68.58 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=35.3
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
++.+++++||+||||||++..|++.+. +..+.|.+-+.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-----~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-----KRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecCc
Confidence 578999999999999999999999998 7778888766554
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00055 Score=63.21 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.3
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++|+||+|||||||.+.|++-+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998764
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00049 Score=59.14 Aligned_cols=24 Identities=38% Similarity=0.665 Sum_probs=21.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00054 Score=61.95 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-.++|+|++|+|||||++.|.|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCc
Confidence 3689999999999999999998765
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0012 Score=55.13 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00097 Score=62.82 Aligned_cols=28 Identities=39% Similarity=0.468 Sum_probs=24.2
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.++.|.||+|||||||.+.|..-++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999987553
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00071 Score=63.81 Aligned_cols=31 Identities=26% Similarity=0.582 Sum_probs=27.1
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.++++..+.|.||+|||||||+++|++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4556777899999999999999999999775
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00071 Score=60.20 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCCcchhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
.+-+++|+|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00072 Score=58.93 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCCcchhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999999875
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00065 Score=58.59 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+..+.|+||+||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999987664
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00059 Score=66.35 Aligned_cols=39 Identities=15% Similarity=0.335 Sum_probs=31.0
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
-+++|+++.|.||+|||||||+..++.... ...|.+.|-
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~-----~~g~~vlyi 95 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ-----AAGGIAAFI 95 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH-----hCCCeEEEE
Confidence 678999999999999999999888876665 444555443
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00077 Score=58.86 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+|-+++|.|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999998876
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00069 Score=57.70 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.3
Q ss_pred eEEEEEccCCCCcchhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00084 Score=58.72 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.6
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998876
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0007 Score=60.17 Aligned_cols=24 Identities=29% Similarity=0.743 Sum_probs=20.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|+||||||||||++.|..-++
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999877654
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00082 Score=58.20 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=24.5
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++.+++|+|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567999999999999999999987664
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00087 Score=65.46 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=31.9
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 158 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 158 (361)
.+..++|+||+|||||||++.|...+. +..+.|.+.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-----~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-----MQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-----HCCCEEEEEeC
Confidence 566899999999999999999998887 66777777543
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00091 Score=57.37 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.2
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999987654
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=57.47 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|++|+|||||++.+.+..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc
Confidence 368999999999999999997654
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00093 Score=58.43 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998664
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00086 Score=67.97 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=29.7
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 44488889988 88999999999999999999764
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00093 Score=58.71 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|-+++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999988664
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.00096 Score=57.37 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=22.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|.|++||||||+.+.|+.-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998775
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0019 Score=57.03 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|++|+|||||++.+.+-.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999887643
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.002 Score=56.14 Aligned_cols=23 Identities=52% Similarity=0.663 Sum_probs=20.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998744
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0011 Score=58.32 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=25.2
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+|-+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999997664
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0011 Score=57.07 Aligned_cols=26 Identities=23% Similarity=0.509 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999987553
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0009 Score=61.97 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.9
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998754
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0013 Score=57.68 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=23.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++|+|++|||||||++.|.+.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999999886
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0015 Score=60.89 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=27.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhccccccccccee
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 153 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I 153 (361)
...+.|+||+|+|||||+++|++.+. +..+.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~-----~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF-----DTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH-----SCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc-----CCCcce
Confidence 35899999999999999999999987 555544
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00041 Score=60.30 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=25.3
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++.+-+++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344567899999999999999999987664
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0012 Score=56.81 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998864
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0024 Score=55.44 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0013 Score=54.64 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0016 Score=63.78 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=29.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc------ccccccccceeeeccc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE------NDKFASERAQVTYNSS 158 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~------~~~~~p~~G~I~i~G~ 158 (361)
-.++|||.+|+|||||+|+|.+-.. .....|..|.+.+.+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~ 49 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDP 49 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCc
Confidence 4689999999999999999998321 0011256677777653
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0014 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998653
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0015 Score=61.63 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=20.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++-+++|.||+||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999988664
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0014 Score=54.12 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.002 Score=55.33 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+++|+|+.||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987654
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0021 Score=53.37 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|||||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0015 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999987643
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0032 Score=53.32 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998753
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0013 Score=54.83 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|+.|+|||||++.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 489999999999999999987543
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0016 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998643
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0016 Score=54.27 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.1
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|||||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0015 Score=54.25 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0017 Score=54.09 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998755
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0016 Score=54.17 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0016 Score=54.70 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0017 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=20.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|||||||++.+.+-.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999988744
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0017 Score=57.43 Aligned_cols=24 Identities=29% Similarity=0.645 Sum_probs=20.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+||+||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976553
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0016 Score=55.92 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCCcchhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
--.++|+|+.|||||||++.|.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999875
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0016 Score=55.57 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.9
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998754
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0016 Score=55.29 Aligned_cols=24 Identities=13% Similarity=0.594 Sum_probs=21.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|+|++||||||+.+.|+..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987664
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0021 Score=54.16 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=22.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
++.-.++|+|+.|||||||++.+.+-.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345579999999999999999997643
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0019 Score=57.58 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|-+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999988664
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0035 Score=54.25 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=20.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.+.-.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC
Confidence 334578999999999999999987643
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0018 Score=57.85 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+-++.|+||+||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999987664
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0032 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998743
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0019 Score=55.59 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|.|+.||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988774
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0018 Score=54.54 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|||||||++.+.+-.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998753
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0017 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|+.|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 478999999999999999976443
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0016 Score=54.77 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999997643
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0019 Score=54.41 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998644
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0034 Score=55.39 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=21.3
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0022 Score=56.27 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+-+++|+|+.||||||+.+.|+..+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999987664
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0026 Score=55.71 Aligned_cols=28 Identities=18% Similarity=0.523 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+..+++|.|+.||||||+.+.|+..+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4456899999999999999999986553
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0019 Score=55.11 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.4
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998864
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0021 Score=53.40 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0019 Score=55.01 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999988743
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.002 Score=57.77 Aligned_cols=28 Identities=32% Similarity=0.637 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++.+++|+|+.||||||+.+.|+.-+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999986553
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0022 Score=54.18 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988654
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0018 Score=55.74 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=21.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999987654
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0017 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.-.++|+|++|+|||||++.+.+-.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998753
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0021 Score=56.93 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=20.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+||.||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976553
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0027 Score=56.16 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998876
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0023 Score=54.42 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987654
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0022 Score=54.49 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998644
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0022 Score=54.53 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0024 Score=55.28 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=4.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998875
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.002 Score=60.32 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=21.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|++|||||||++.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0023 Score=58.58 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
--+++|.|++||||||+.+.|...+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35799999999999999999988654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0048 Score=53.22 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 368999999999999999887643
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0022 Score=54.43 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCCcchhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
+.-.++|+|++|||||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455799999999999999999874
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0023 Score=53.72 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|||||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0024 Score=54.96 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998744
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0025 Score=52.97 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999763
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0051 Score=52.91 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0032 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.667 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCCcchhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
.-.++|+|+.|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999965
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0026 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998644
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0027 Score=60.26 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=25.4
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999886
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0033 Score=54.34 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=20.8
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|||||||++.+.+-.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999997643
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0026 Score=53.38 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0027 Score=53.74 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|||||||++.+.+-.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468999999999999999998643
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0027 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999997644
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0022 Score=59.46 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|++|+|||||+|.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987643
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0027 Score=54.33 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.|.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0038 Score=53.40 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0031 Score=55.09 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.8
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999998876
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0029 Score=53.43 Aligned_cols=23 Identities=52% Similarity=0.661 Sum_probs=20.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.003 Score=53.96 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=22.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|+.|+|||||++.+.+.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 589999999999999999998776
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0029 Score=53.78 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|||||||++.+.+-.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999997644
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0029 Score=55.59 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.9
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.|.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998755
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0045 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.8
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998643
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.003 Score=56.11 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
..+++|+|+.||||||+.+.|...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998764
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0036 Score=57.15 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++-+++|+||+||||||+.+.|+.-+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 556899999999999999999986553
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0045 Score=52.40 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999984
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0096 Score=51.98 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=21.8
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34456899999999999999998764
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.003 Score=57.63 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.3
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|++|||||||++.|.+-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998743
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0033 Score=53.93 Aligned_cols=24 Identities=46% Similarity=0.592 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998744
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0049 Score=58.85 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=23.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|.||+|+|||||++.+++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 799999999999999999999887
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.003 Score=58.36 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999998864
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.006 Score=54.11 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998744
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0035 Score=57.78 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998754
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0033 Score=54.05 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=20.6
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 36899999999999999999874
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0034 Score=53.85 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0033 Score=53.64 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
++.-.++|+|+.|||||||++.+.+-.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578999999999999999998644
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0033 Score=60.41 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=27.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
++...+++ .|.-++|+|+||+|||||+..|.+
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 34477887 688999999999999999999877
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0034 Score=54.26 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0038 Score=60.19 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=26.3
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-|++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999999998875
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0041 Score=52.45 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3446789999999999999999998775
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0037 Score=58.00 Aligned_cols=26 Identities=35% Similarity=0.641 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+..+.|.||+|+|||||+++|++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999998765
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0019 Score=58.40 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=22.6
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
.+.+|+.++|+||+||||||++.++..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 345789999999999999998887653
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0052 Score=52.93 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0034 Score=59.53 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|++|+|||||+|.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0038 Score=56.06 Aligned_cols=24 Identities=33% Similarity=0.709 Sum_probs=21.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0033 Score=60.71 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
..-.++|+|++|+|||||++.|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998865
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0058 Score=53.11 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=22.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.-.++|+|+.|+|||||++.+.+-..
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCC
Confidence 3445789999999999999999987543
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0038 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.3
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|||||||++.+.+-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999998764
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0032 Score=54.11 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.6
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998765
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0039 Score=53.73 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998755
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0037 Score=59.26 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
++| +++|+|+.|||||||+|.|.|--
T Consensus 9 ~~g-~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVG-YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCC-EEEEECCCCCcHHHHHHHHhCCC
Confidence 344 89999999999999999998843
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0054 Score=61.31 Aligned_cols=43 Identities=16% Similarity=0.374 Sum_probs=32.4
Q ss_pred CCCCCc--eEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 112 YDVPKT--TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 112 ~~I~~G--e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
|.+.++ .+++|+|++||||||++..|++.+. .....|.+-..|
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~-----~~G~kVllv~~D 136 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ-----KRGLKPALIAAD 136 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH-----HHHCCEEEECCS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecc
Confidence 555534 5899999999999999999999887 444456554433
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0045 Score=52.24 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998864
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0045 Score=57.97 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCCcchhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
.-+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0041 Score=54.85 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-.++|+|+.|||||||++.|.+-..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999987653
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0041 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987744
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0039 Score=53.22 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=20.6
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0043 Score=53.02 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0037 Score=53.08 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=9.8
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0019 Score=56.97 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|||||||++.|.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998854
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0041 Score=57.28 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=23.7
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++..+.|.||+|+|||||+++|+..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3444589999999999999999988775
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0046 Score=54.31 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998543
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0046 Score=52.22 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.3
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0043 Score=54.01 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.3
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.004 Score=55.54 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999998774
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0037 Score=61.20 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|++|||||||+++|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999874
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0043 Score=55.05 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987553
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0039 Score=53.58 Aligned_cols=26 Identities=19% Similarity=0.463 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.-.++|+|+.|+|||||++.+.+-..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~ 42 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQS 42 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34789999999999999999887443
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.004 Score=57.95 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|..|||||||+|.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998864
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0043 Score=55.31 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|-+++|+|+.||||||+.+.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999987664
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.004 Score=58.29 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999863
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0042 Score=53.18 Aligned_cols=24 Identities=17% Similarity=0.468 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCCcchhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.-.++|+|+.|||||||++.+.+-
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 447899999999999999999853
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0036 Score=54.19 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=19.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998644
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0046 Score=53.17 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCC
Confidence 34468999999999999999998643
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0044 Score=57.30 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|+.|||||||++.|.|...
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~~ 30 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTKQ 30 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Confidence 589999999999999999988543
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0046 Score=53.79 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3478999999999999999998643
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0047 Score=53.64 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=21.7
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.+.-.++|+|+.|+|||||++.+.+-.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 334578999999999999999998644
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0047 Score=58.27 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=23.5
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+..+.|.||+|+|||||+++|++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 45689999999999999999999886
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0022 Score=58.61 Aligned_cols=31 Identities=32% Similarity=0.608 Sum_probs=25.9
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.+..+.| +.|.||+|+|||||+++|+....
T Consensus 39 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 39 LGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 55566666 77999999999999999998765
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0048 Score=53.37 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0045 Score=54.22 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=24.7
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+.|.-..--.++|+|+.|||||||++.+.+-.
T Consensus 18 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 18 LYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp -CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 55544444579999999999999999998743
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.005 Score=59.77 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998775
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0045 Score=53.96 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=19.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC--
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999987543
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0043 Score=62.76 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=28.3
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.+-+|+.++|+||+|+|||||++.|+.-..
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 5777899999999999999999999988776
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0042 Score=53.96 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.4
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
=.++|+|+.|||||||++.+.+-
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998763
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0051 Score=57.26 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999863
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0078 Score=53.12 Aligned_cols=25 Identities=40% Similarity=0.790 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCcchhhhh-hhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNR-ISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~-I~gl~~ 142 (361)
-.++|+|+.|||||||++. +.+-+.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~ 41 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFE 41 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3589999999999999999 555543
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0054 Score=58.48 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-+++|+++.|.||+|||||||+..++.-.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 68999999999999999999999888753
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0048 Score=54.59 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+-+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34799999999999999999988653
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0067 Score=54.74 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=24.9
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.-+++ .|..++|+||+|||||||...|+.-.
T Consensus 28 ~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 28 VLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 55555 36789999999999999999887644
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0055 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998644
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0053 Score=56.85 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|..|+|||||++.|.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0052 Score=56.75 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++++|++|+|||||+|.|.+-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998744
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0053 Score=56.48 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|++|+|||||++.|.|-.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998844
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0065 Score=54.73 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+..+.|+|+.||||||+.+.|+.-+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999987664
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.006 Score=55.71 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=22.9
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+|-+++|.|+.||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999998876
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0054 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999988643
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0082 Score=54.45 Aligned_cols=33 Identities=24% Similarity=0.559 Sum_probs=27.4
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+-.+++..++.|+||.||||+|..+.|+.-+.
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 445677888999999999999999999987775
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0055 Score=51.73 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
....+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999998775
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.31 E-value=0.006 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998743
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.007 Score=58.68 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=24.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++.++.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3556899999999999999999998775
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0057 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999763
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0069 Score=54.59 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=25.1
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|-+++|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999988876
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0086 Score=59.24 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+.=++..++.|+|++||||||+.+.|+.-+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 334567899999999999999999987644
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0071 Score=55.51 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.8
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++-+++|.|+.||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999998775
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0064 Score=56.54 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.6
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-.++|+|.+|+|||||+|.|.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5799999999999999999998654
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0054 Score=52.48 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=21.2
Q ss_pred CCceEEEEEccCCCCcchhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
++.-.++|+|+.|+|||||++.+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 3445799999999999999999854
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0069 Score=55.66 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=25.2
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|.+++|.|++||||||+++.|...+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999998886
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0081 Score=54.27 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=22.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.-+.|.||+|+|||||+++|+..+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3488999999999999999998764
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0066 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|+.|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999998887554
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.008 Score=57.83 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.+++|+||+|||||||...|+.-+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35789999999999999999987665
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0076 Score=57.86 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+++|+||+|||||||...|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 35789999999999999999988775
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0071 Score=53.49 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=21.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-.++|+|+.|||||||++.+..-..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999987653
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0078 Score=52.45 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=22.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|.||.|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999988775
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0076 Score=58.06 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..++|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998765
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0077 Score=52.21 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=21.3
Q ss_pred CCceEEEEEccCCCCcchhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
.+.-.++|+|+.|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999864
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.011 Score=51.78 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCCcchhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 347899999999999999888753
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.013 Score=52.59 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=18.6
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|.+|+|||||++.+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 589999999999999998753
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0092 Score=53.94 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.7
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|-+++|.|+.||||||+++.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998775
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.0083 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCC
Confidence 468999999999999999987643
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.0085 Score=54.06 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.9
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|-+++|-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998886
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.0067 Score=60.57 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|++|+|||||+|.|.|-.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998843
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.01 Score=53.83 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=26.0
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|.++.|-|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999999999887
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.01 Score=54.05 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|-+++|.|+.||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5688999999999999999999998886
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.009 Score=53.45 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=20.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|++|+|||||++.+.+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998864
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.01 Score=52.44 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.011 Score=55.67 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=26.1
Q ss_pred ccCCCCCc--eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKT--TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~G--e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.-.+..| ..+.|.||+|+|||||+++|++.+.
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44344444 3489999999999999999999875
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.016 Score=48.36 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.-+.|.||+|+|||+|+++|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3445689999999999999999988664
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.0099 Score=56.28 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=25.3
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-+++|+++.|.||+|||||||+..++.-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999888753
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.014 Score=51.62 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=22.7
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
.-+++ .|.-++|.|+||+|||||...+..
T Consensus 10 s~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 10 NFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44444 367899999999999999887754
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.013 Score=52.45 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.|+||.||||+|..+.|+.-+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998775
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.014 Score=54.78 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+-.++|+|.+|+|||||+|.|.|-..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce
Confidence 445799999999999999999988653
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.0063 Score=52.95 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCCcchhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
.-.++|+|+.|+|||||++.+.+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 34689999999999999988864
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.014 Score=54.15 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++..+.|.||.|+|||||+++|+..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445699999999999999999998875
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.011 Score=56.25 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=29.7
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
|+.+.--+++|+++.|.|++|+|||||+..++.-.
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44477679999999999999999999998887544
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.013 Score=58.48 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.6
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999875
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.013 Score=57.02 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-+++|.++.|.||+|||||||+..++.-..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999988876554
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.015 Score=50.13 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999988764
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.015 Score=57.78 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++|+||+|||||||...|+.-+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999988775
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.014 Score=56.28 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|..|||||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.021 Score=57.26 Aligned_cols=27 Identities=41% Similarity=0.786 Sum_probs=24.9
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.+++++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999887
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.017 Score=54.49 Aligned_cols=25 Identities=44% Similarity=0.535 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.+-.++|+|+.|+|||||++.+.+-
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999997764
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.018 Score=52.16 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=26.7
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++.-.+.|.||.|+||||++.+|+..+.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 477766799999999999999999999876
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.014 Score=52.07 Aligned_cols=26 Identities=31% Similarity=0.636 Sum_probs=22.9
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~ 138 (361)
=+++|+++.|.|++|+|||||+--++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999999986543
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.018 Score=54.66 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=24.7
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+..+.|.||+|+|||||++.+...+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556899999999999999999998875
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.025 Score=54.60 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.4
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.-+++|+|+.|+|||||++.|++.+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999998775
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.022 Score=52.24 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
...+.|.||+|+|||||+++|+....
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34688999999999999999988654
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=94.13 E-value=0.018 Score=55.35 Aligned_cols=26 Identities=38% Similarity=0.865 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+..+.|.||+|+||||++++|+..+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 34688999999999999999998774
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.015 Score=57.65 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|++|+|||||+|.|.|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.029 Score=53.40 Aligned_cols=28 Identities=18% Similarity=0.442 Sum_probs=24.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|..+.|.||.|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456899999999999999999999886
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.017 Score=56.24 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++..++++|.+|+|||||+|.|.+...
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~ 187 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEAT 187 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhcc
Confidence 345799999999999999999999743
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.025 Score=49.48 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=20.7
Q ss_pred CceEEEEEccCCCCcchhh-hhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLV-NRISKVF 141 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl-~~I~gl~ 141 (361)
+|.++.+.||.||||||++ +++..+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999997 5544443
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.018 Score=57.54 Aligned_cols=31 Identities=35% Similarity=0.656 Sum_probs=25.8
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+....++| +.|.||.|||||+|+++|++-..
T Consensus 201 ~g~~~prG--iLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 201 IGIDPPRG--VLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp HCCCCCCE--EEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 34455666 88999999999999999999776
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=93.99 E-value=0.024 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|.||.|+|||+|+++|+.-+.
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477889999999999999998775
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.02 Score=52.78 Aligned_cols=25 Identities=36% Similarity=0.818 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.|.||.|+|||||+++|+..+.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999998875
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.023 Score=54.05 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+..-+.|.||.|+|||||+++|+....
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~ 70 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEAN 70 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcC
Confidence 334588999999999999999998773
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.018 Score=57.61 Aligned_cols=31 Identities=32% Similarity=0.593 Sum_probs=25.7
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+..++| +.|.||.|||||+|+++|++-..
T Consensus 210 ~g~~~prG--vLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 210 VGIKPPKG--VLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp HCCCCCCE--EEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCe--EEEECCCCCcHHHHHHHHHHHhC
Confidence 33445566 88999999999999999999876
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.018 Score=56.08 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++..++++|.+|+|||||+|.|.+-..
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~ 185 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFS 185 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhc
Confidence 456899999999999999999998753
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.019 Score=47.78 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+.-+.|.||.|+|||+++++|....
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCcEEEECCCCccHHHHHHHHHHhC
Confidence 3458899999999999999987644
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.02 Score=57.31 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=25.7
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+..++| +.|.||.|||||+|+++|++-..
T Consensus 210 ~g~~~prG--vLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 210 MGIRAPKG--ALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp HCCCCCCE--EEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCe--eEEECcCCCCHHHHHHHHHHHhC
Confidence 34445555 88999999999999999999876
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.027 Score=50.28 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.5
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46899999999999999999998775
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.021 Score=56.27 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|..++|||||+|+|.+--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999998754
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.027 Score=51.59 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=21.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-.+||+||.||||||+.+.|+.-+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987664
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.026 Score=56.82 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.|-.++|+|+.|+|||||+|.|.+-.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45569999999999999999999864
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.023 Score=56.27 Aligned_cols=31 Identities=29% Similarity=0.550 Sum_probs=26.2
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.-++| +.|.||.|||||+|+++|++-..
T Consensus 177 ~gi~~prG--vLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 177 LGIAQPKG--VILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp HTCCCCCC--EEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCCCc--eEEeCCCCCCHHHHHHHHHHhhC
Confidence 44455666 88999999999999999999876
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=93.54 E-value=0.031 Score=52.87 Aligned_cols=26 Identities=38% Similarity=0.662 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..-+.|.||.|+|||+|+++|+....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 34589999999999999999998765
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.03 Score=57.85 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=25.0
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.|-++.|.|++||||||+.+.|...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999998775
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.025 Score=58.07 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
--.++|+|..|+|||||+|.|.|--
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3489999999999999999999854
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.026 Score=57.54 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=25.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.|-.+.|+|.+||||||+.++|+.-+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999886
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.026 Score=58.61 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+--.++|+|+.|+|||||+|.|.|-.
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 44678999999999999999999864
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.032 Score=55.45 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=30.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|+.+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 333555699999999999999999999998887664
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.04 Score=53.15 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=23.0
Q ss_pred CCCCceEEEEEccCCCCcchhh-hhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLV-NRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl-~~I~gl~~ 142 (361)
=+++| ++.|.||+|||||||+ .++....+
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~ 54 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMR 54 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999 8999999999999994 44444444
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.033 Score=53.63 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+...+.|.||+|+|||||+++|+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 345689999999999999999988764
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.026 Score=56.96 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=26.3
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.+..++| +.|.||.|||||+|+++|++-..
T Consensus 238 ~Gi~pprG--ILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 238 LGIDPPKG--ILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp HTCCCCSE--EEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCc--eEeeCCCCCcHHHHHHHHHhccC
Confidence 44556666 88999999999999999999776
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.20 E-value=0.032 Score=53.73 Aligned_cols=25 Identities=40% Similarity=0.836 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.|.||+|+|||||+++|+..+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998774
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.032 Score=52.61 Aligned_cols=24 Identities=42% Similarity=0.659 Sum_probs=21.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|.||+|+|||||++.|+....
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988765
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.035 Score=58.04 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=24.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|.++.|+|.+||||||+.+.|...+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999998773
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 361 | ||||
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 6e-04 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 0.001 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 0.003 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 0.004 |
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 6e-04
Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 23/170 (13%)
Query: 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYT 170
D DV T +L+IG G GKSSL+ R F +D F E A + ++ +
Sbjct: 1 DEDVLTTLKILIIGESGVGKSSLLLR----FTDDTFDPELAATIGV------DFKVKTIS 50
Query: 171 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 230
+ +++DT + + + R + VI D + ++
Sbjct: 51 VDGNKAKLAIWDTAGQERFRT----LTPSYY----RGAQGVILVYDVTRRDTFVKLDNWL 102
Query: 231 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYL 280
E R + L K + + +V++ A + ++
Sbjct: 103 NELETYCTRNDIVNM-----LVGNKIDKENREVDRNEGLKFARKHSMLFI 147
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.1 bits (85), Expect = 0.001
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 110 SDYD-VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 168
S+YD + K LLLIG G GKS L+ R F +D + ++ Y S++G + ++
Sbjct: 1 SEYDYLFK---LLLIGNSGVGKSCLLLR----FSDDTYTND-----YISTIGV-DFKIKT 47
Query: 169 YTIPRGSNSFSLYDT 183
+ + ++DT
Sbjct: 48 VELDGKTVKLQIWDT 62
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 36.3 bits (83), Expect = 0.003
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 174
+ ++L++G G GKSS VN I + S + R
Sbjct: 30 VNSLTILVMGKGGVGKSSTVNSIIG--------ERVVSI---SPFQSEGPRPVMVSRSRA 78
Query: 175 SNSFSLYDTRSLSDDASDN---INMIKLWIMEGVRHGELVIRRSDSSSLRN--RMRCKAH 229
+ ++ DT L + N +N+IK ++++ L + R D+ + N ++ KA
Sbjct: 79 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAI 138
Query: 230 KIGCEPSVIRKVNFVIFVVDGL 251
+ K +
Sbjct: 139 TDSFGKGIWNKAIVALTHAQFS 160
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 36.1 bits (83), Expect = 0.004
Identities = 36/224 (16%), Positives = 79/224 (35%), Gaps = 20/224 (8%)
Query: 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYT 170
+V ++L+GP G GK++ + I+ + E + ++
Sbjct: 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 171 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 230
I S++LY ++ D+ + + + K+ E + V + L NR
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK------ 136
Query: 231 IGCEPSVI-----RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 285
P + ++V +V V E S+++ + + L +
Sbjct: 137 ----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM--RAELKKLQRQLG 190
Query: 286 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327
+ VTH + +++ DR G L + +++D P +
Sbjct: 191 VTTIYVTHDQVEAMTMGDRI-AVMNRGVLQQVGSPDEVYDKPAN 233
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 361 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.44 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.43 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.78 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.64 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.62 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.55 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.53 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.46 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.45 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.44 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.42 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.4 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.4 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.36 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.22 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.22 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.22 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.22 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.18 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.16 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.16 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.13 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.1 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.09 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.07 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.04 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.02 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.0 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.98 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.88 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.83 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.82 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.81 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.81 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.8 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.79 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.78 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.77 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.76 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.75 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.73 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.72 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.72 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.71 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.71 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.68 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.65 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.65 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.62 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.6 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.6 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.56 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.52 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.52 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.51 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.47 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.47 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.47 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.46 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.43 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.42 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.41 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.39 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.38 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.36 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.36 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.33 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.29 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.27 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.24 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.21 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.21 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.2 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.19 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.17 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 96.13 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.06 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.03 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.02 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.02 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 96.01 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.01 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.97 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.97 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.96 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 95.93 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.92 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.9 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.88 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.83 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.83 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.81 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.8 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.8 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.77 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.77 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.76 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.74 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.73 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.72 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.72 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.71 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.71 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.69 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.69 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.68 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.67 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.66 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.63 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.62 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.62 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.61 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.59 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.54 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.54 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.47 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.46 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.45 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.44 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.43 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.43 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.38 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.37 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.37 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.35 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.35 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.34 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.34 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.32 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.31 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.3 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.28 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.25 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.24 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.23 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.22 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.21 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.21 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.19 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.18 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.16 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.16 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.15 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.14 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.12 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.09 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.08 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.04 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.04 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.04 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.02 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.98 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.97 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.94 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.94 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.92 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.92 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.91 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.89 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.83 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.82 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.8 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.74 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 94.71 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.64 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 94.62 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.59 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.58 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.53 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 94.52 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.51 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.51 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.49 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.45 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.36 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.33 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 94.3 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 94.26 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.19 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.15 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.1 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.07 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.06 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.03 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.99 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.97 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.81 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.78 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.73 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.47 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.25 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.05 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.93 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 92.92 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.76 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.75 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 92.74 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.53 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.51 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 92.19 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 92.15 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.85 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.81 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.76 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.61 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.6 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.41 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.41 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 91.24 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.04 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 90.88 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 90.66 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 90.59 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.42 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.02 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 89.71 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 89.18 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.12 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 89.11 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 88.28 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 88.13 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 87.91 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 87.86 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 87.64 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 87.57 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 87.4 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 87.3 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 86.92 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 86.69 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.89 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 85.15 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.61 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.25 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 84.07 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 83.28 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 83.06 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 82.84 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.76 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 81.44 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 80.84 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 80.83 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 80.19 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.4e-51 Score=382.58 Aligned_cols=206 Identities=15% Similarity=0.174 Sum_probs=175.2
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
|..|+++||+++|++ .+| |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 4 M~~I~v~nlsk~yg~---~~a---l~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~-----p~sG~I~i~g~~i~~ 72 (239)
T d1v43a3 4 MVEVKLENLTKRFGN---FTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTY 72 (239)
T ss_dssp CCCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred cCeEEEEEEEEEECC---EEE---EcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEEcceeccc
Confidence 456899999999976 467 555999999999999999999999999999999999 999999999998861
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. +.++.++||||++.+|+. ++.+|+.++.... ..++++.++++.++++.++|.+
T Consensus 73 ---------------~~--~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------ 128 (239)
T d1v43a3 73 ---------------LP--PKDRNISMVFQSYAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEE------ 128 (239)
T ss_dssp ---------------SC--GGGGTEEEEEC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGG------
T ss_pred ---------------CC--cccceEEEEeechhhcccchHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh------
Confidence 11 234568999999999988 9999999987644 4566788899999999999988
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
+++++|.+||||||||++||||| ||||++||+ |+|||+|||
T Consensus 129 -----------~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~ 197 (239)
T d1v43a3 129 -----------LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 197 (239)
T ss_dssp -----------GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred -----------hhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 56999999999999999999999 999999864 999999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+++.++||||+ +|++|+|++.|++++++.+|.+++++.++.
T Consensus 198 ~~a~~~~dri~-vm~~G~iv~~G~~~el~~~P~~~~~~~~lg 238 (239)
T d1v43a3 198 VEAMTMGDRIA-VMNRGQLLQIGSPTEVYLRPNSVFVATFIG 238 (239)
T ss_dssp HHHHHHCSEEE-EEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCCHHHHHhhC
Confidence 68889999996 599999999999999999998887766653
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-51 Score=378.96 Aligned_cols=202 Identities=12% Similarity=0.165 Sum_probs=142.8
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++||+++|++ .+| |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 1 Iev~nv~k~yg~---~~~---l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~-----p~sG~I~i~g~~i~~--- 66 (232)
T d2awna2 1 VQLQNVTKAWGE---VVV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMND--- 66 (232)
T ss_dssp EEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEESSSCCTT---
T ss_pred CEEEEEEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCCEEEECCEECCC---
Confidence 689999999976 367 566999999999999999999999999999999999 999999999998851
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.. ..++.++||||++.+++. ++.+|+.++.... ..++++.++++.++++.+++.+
T Consensus 67 ------------~~--~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~l~~--------- 122 (232)
T d2awna2 67 ------------TP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAH--------- 122 (232)
T ss_dssp ------------SC--GGGTCEEEECSSCCC----------------------CHHHHHHHHHHHHC-------------
T ss_pred ------------Cc--hhhceeeeeccccccccchhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCChh---------
Confidence 11 234568999999999988 9999999987643 3456778889999999999988
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
+++++|++||||||||++||||| ||||++||+ |+|||+||| +++
T Consensus 123 --------~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a 194 (232)
T d2awna2 123 --------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 194 (232)
T ss_dssp -------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH
T ss_pred --------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 46999999999999999999999 999999764 999999999 688
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
..+||||+ +|++|+|++.|++++++..|.+.+++.++
T Consensus 195 ~~~~dri~-vm~~G~iv~~G~~~el~~~P~~~~v~~fl 231 (232)
T d2awna2 195 MTLADKIV-VLDAGRVAQVGKPLELYHYPADRFVAGFI 231 (232)
T ss_dssp HHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHhCCEEE-EEECCEEEEEeCHHHHHhCCCCHHHHHhc
Confidence 89999996 59999999999999999999887765554
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-51 Score=381.97 Aligned_cols=210 Identities=14% Similarity=0.160 Sum_probs=181.6
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
||+++||+++|+.+. .++| |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 mi~v~nlsk~y~~~~~~~~a---l~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~-----p~sG~I~~~g~~i~~~ 72 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQELTTL 72 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEE---EEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEECTT
T ss_pred CEEEEeEEEEeCCCCeeEEE---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc-----ccCCceEEcCeEeeeC
Confidence 589999999997543 2467 555999999999999999999999999999999999 9999999999987511
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. .......|+.+++|||++.+++. ++.+||.+++... ..++++.++++.++|+.+||.+
T Consensus 73 ~------------~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~-~~~~~~~~~~v~~~L~~vgL~~------- 132 (240)
T d3dhwc1 73 S------------ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEVKRRVTELLSLVGLGD------- 132 (240)
T ss_dssp C------------HHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT-TCCTTHHHHHHHHHHHHHSTTT-------
T ss_pred C------------hhhhhhhhccccccccccccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 0 11223345668999999998887 9999999987533 3566778899999999999988
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
.++++|++||||||||++||||| ||||++||+ |+|||+||| +
T Consensus 133 ----------~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~ 202 (240)
T d3dhwc1 133 ----------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD 202 (240)
T ss_dssp ----------TTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH
T ss_pred ----------hhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH
Confidence 56999999999999999999999 999999864 999999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
.+..+||||+ +|++|+|++.|+++++|.+|.+++++.|
T Consensus 203 ~~~~~~dri~-vl~~G~iv~~G~~~ei~~~P~~~~t~~F 240 (240)
T d3dhwc1 203 VVKRICDCVA-VISNGELIEQDTVSEVFSHPKTPLAQKF 240 (240)
T ss_dssp HHHHHCSEEE-EEETTEEEEEEETTTTTCSSCCTTTTCC
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHHHhCCCChHHcCC
Confidence 7889999996 5999999999999999999999998764
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=8.1e-52 Score=384.62 Aligned_cols=212 Identities=14% Similarity=0.213 Sum_probs=182.9
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
|..|+++||+++|+.+. ++| |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 1 M~~i~v~nlsk~y~~g~-~~a---L~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~-----p~~G~I~~~g~~i~~ 71 (242)
T d1oxxk2 1 MVRIIVKNVSKVFKKGK-VVA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVAS 71 (242)
T ss_dssp CCCEEEEEEEEEEGGGT-EEE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEEE
T ss_pred CCEEEEEeEEEEECCCC-EEE---EeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC-----CCCceEEECCEEeec
Confidence 45689999999996543 467 555999999999999999999999999999999999 999999999998751
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......++.+++|||++.+|+. ++.+||.+++.. ...++++.++++.++++.++|.+
T Consensus 72 ~~------------~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~------ 132 (242)
T d1oxxk2 72 NG------------KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN-MKMSKEEIRKRVEEVAKILDIHH------ 132 (242)
T ss_dssp TT------------EESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT-SSCCHHHHHHHHHHHHHHTTCGG------
T ss_pred Cc------------hhhcchhhccceEEeccccccccccHHHHhhhhhHh-hcCCHHHHHHHHHHHHhhcChHh------
Confidence 00 11223345679999999999988 999999998763 34566778899999999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
+++++|++||||||||++||||| ||||++||+ |+|||+|||
T Consensus 133 -----------~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~ 201 (242)
T d1oxxk2 133 -----------VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP 201 (242)
T ss_dssp -----------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred -----------hhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCH
Confidence 56999999999999999999999 999999874 999999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
+++.++||||+ +|++|+|++.|++++++.+|.+.+++.++
T Consensus 202 ~~~~~~~dri~-vm~~G~iv~~g~~~el~~~P~~~~~~~fl 241 (242)
T d1oxxk2 202 ADIFAIADRVG-VLVKGKLVQVGKPEDLYDNPVSIQVASLI 241 (242)
T ss_dssp HHHHHHCSEEE-EEETTEEEEEECHHHHHHSCSSHHHHHHH
T ss_pred HHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCCHHHHhcc
Confidence 57889999996 59999999999999999999888776654
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.6e-51 Score=381.07 Aligned_cols=210 Identities=12% Similarity=0.166 Sum_probs=181.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
|+.|+++||+++|++ .+| |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 M~~i~v~nl~k~yg~---~~a---l~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~-----p~sG~I~~~g~~i~~ 69 (240)
T d1g2912 1 MAGVRLVDVWKVFGE---VTA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVAD 69 (240)
T ss_dssp CEEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEE
T ss_pred CCcEEEEeEEEEECC---EEE---EcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCCEEEECCEEecc
Confidence 457999999999976 367 555999999999999999999999999999999999 999999999988741
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
. .........++.+++|||++.+++. ++.+|+.++...+ +.++.+.++++.++++.+++.+
T Consensus 70 ~-----------~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~-~~~~~e~~~~v~~~l~~~~l~~------ 131 (240)
T d1g2912 70 P-----------EKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTE------ 131 (240)
T ss_dssp G-----------GGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGG------
T ss_pred c-----------chhhhcccccccceecccchhhcchhhhhHhhhhhHHHc-CCCHHHHHHHHHHHHHHcCChh------
Confidence 0 0011222335679999999999988 9999999987633 3456778889999999999988
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
+++++|.+||||||||++||||| ||||++||+ |+|||+|||
T Consensus 132 -----------~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~ 200 (240)
T d1g2912 132 -----------LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ 200 (240)
T ss_dssp -----------GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCH
Confidence 56999999999999999999999 999999764 999999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
+++..+||||+ +|++|+|++.|++++++.+|.++++++|
T Consensus 201 ~~~~~~~drv~-vm~~G~iv~~G~~~el~~~P~~~~~~~f 239 (240)
T d1g2912 201 VEAMTMGDRIA-VMNRGVLQQVGSPDEVYDKPANTFVAGF 239 (240)
T ss_dssp HHHHHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHHHHH
T ss_pred HHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCCHHHHHh
Confidence 57889999996 5999999999999999999998887655
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.1e-50 Score=371.34 Aligned_cols=199 Identities=14% Similarity=0.186 Sum_probs=172.9
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++||+++|++ .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.
T Consensus 1 mi~v~nlsk~y~~----~a---L~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~-----p~sG~I~~~G~~i~--- 65 (229)
T d3d31a2 1 MIEIESLSRKWKN----FS---LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVT--- 65 (229)
T ss_dssp CEEEEEEEEECSS----CE---EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECT---
T ss_pred CEEEEEEEEEeCC----EE---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCCCEEEEccEecc---
Confidence 5899999999975 25 666999999999999999999999999999999999 99999999999986
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
... ..++.++||||++.+|+. ++.+|+.++..... ...++++.++++.+++.+
T Consensus 66 ------------~~~--~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~----~~~~~~~~~~l~~~~l~~-------- 119 (229)
T d3d31a2 66 ------------DLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK----IKDPKRVLDTARDLKIEH-------- 119 (229)
T ss_dssp ------------TSC--HHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC----CCCHHHHHHHHHHTTCTT--------
T ss_pred ------------ccc--hhHhcceeeccccccCccccHHHHHHHHHhhcc----ccHHHHHHHHHHHhcchh--------
Confidence 111 224568999999999988 99999998875322 123467888999999988
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
++++++.+||||||||++||||| ||||++||+ |+|||+||| .+
T Consensus 120 ---------~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~ 190 (229)
T d3d31a2 120 ---------LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190 (229)
T ss_dssp ---------TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred ---------hHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHH
Confidence 56999999999999999999999 999999764 899999999 57
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
+..+||||+ +|++|+|++.|++++++..|.+.+++.|+
T Consensus 191 ~~~~~drv~-vm~~G~iv~~g~~~el~~~P~~~~v~~fl 228 (229)
T d3d31a2 191 ARIMADRIA-VVMDGKLIQVGKPEEIFEKPVEGRVASFV 228 (229)
T ss_dssp HHHHCSEEE-EESSSCEEEEECHHHHHSSCCTTHHHHHH
T ss_pred HHHhCCEEE-EEECCEEEEEcCHHHHHhCCCCHHHHhcc
Confidence 889999996 59999999999999999999887765554
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.8e-49 Score=372.77 Aligned_cols=221 Identities=16% Similarity=0.128 Sum_probs=179.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.|+++||+++|++ .+| |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++....
T Consensus 2 ~Lev~nl~k~yg~---~~a---l~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~-----p~~G~I~~~G~~i~~~~ 70 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEV---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLVR 70 (258)
T ss_dssp CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEEE
T ss_pred eEEEEEEEEEECC---EEE---EcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc-----CCCCCEEECCEEeccCC
Confidence 5899999999976 367 556999999999999999999999999999999999 99999999999986211
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
. ....... .........+..+++|||++.+++. ++.+|+.++.......+..+.++++.++++.+++.+.
T Consensus 71 ~-~~~~~~~-~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------- 141 (258)
T d1b0ua_ 71 D-KDGQLKV-ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER------- 141 (258)
T ss_dssp C-TTSSEEE-SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHH-------
T ss_pred c-cchhccc-ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchh-------
Confidence 0 0000000 0001112244568999999998877 9999999875433344557778889999999999763
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
..+++|.+||||||||++||||| ||||++||. |+|||+||| +++
T Consensus 142 ---------~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~ 212 (258)
T d1b0ua_ 142 ---------AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA 212 (258)
T ss_dssp ---------HHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHH
T ss_pred ---------hhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHH
Confidence 24788999999999999999999 999999763 899999999 578
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
..+||||+ +|++|+|++.|++++++.+|.+++++.++.
T Consensus 213 ~~~adri~-vm~~G~iv~~g~~~ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 213 RHVSSHVI-FLHQGKIEEEGDPEQVFGNPQSPRLQQFLK 250 (258)
T ss_dssp HHHCSEEE-EEETTEEEEEECHHHHHHSCCSHHHHHHHH
T ss_pred HHhCCEEE-EEECCEEEEEcCHHHHHhCCCCHHHHHHHh
Confidence 89999996 599999999999999999999988877653
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-47 Score=354.40 Aligned_cols=197 Identities=19% Similarity=0.182 Sum_probs=161.4
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
||+++||+++|+.+. .+.| |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++...
T Consensus 1 mI~i~nlsk~y~~~~~~~~a---l~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~-----p~sG~I~~~g~~i~~~ 72 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYA---LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDL 72 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTC
T ss_pred CEEEEeEEEEeCCCCeeEEE---EeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC-----CCcceeEECCEEcCcC
Confidence 589999999997543 3457 555999999999999999999999999999999999 9999999999998610
Q ss_pred eEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEE--ecCCChhhhhhhcccccccCCCcceeE
Q 018083 164 YFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~--~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
. ....... +..+++|||++.+++. ++.+|+.+++... ...+..+..+++.++++.++|.+.
T Consensus 73 ~------------~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~--- 137 (230)
T d1l2ta_ 73 D------------DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER--- 137 (230)
T ss_dssp C------------HHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG---
T ss_pred C------------hhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhh---
Confidence 0 0111112 3458999999998887 9999999876532 123445667788899999999764
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH 293 (361)
+++++|++|||||||||+||||| ||||++||+ |+|||+|||
T Consensus 138 -------------~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTH 204 (230)
T d1l2ta_ 138 -------------FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (230)
T ss_dssp -------------GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred -------------hhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECC
Confidence 35899999999999999999999 999999764 899999999
Q ss_pred C-ccccccchhhHhhhhhhhcCCCCc
Q 018083 294 G-DLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 294 ~-~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
+ +++++|||++ +|++|+|+++|++
T Consensus 205 d~~~a~~~drv~-~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 205 DINVARFGERII-YLKDGEVEREEKL 229 (230)
T ss_dssp CHHHHTTSSEEE-EEETTEEEEEEEC
T ss_pred CHHHHHhCCEEE-EEECCEEEEeccC
Confidence 3 3457999996 5999999998865
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.9e-46 Score=347.94 Aligned_cols=202 Identities=13% Similarity=0.144 Sum_probs=156.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
||+++||+|+|++.. ++ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 1 mle~knvsf~Y~~~~--~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~--- 67 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSE--QI---LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPID--- 67 (242)
T ss_dssp CEEEEEEEECSSSSS--CS---EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEEST---
T ss_pred CEEEEEEEEECCCCC--ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC-----CCCCEEEECCEEec---
Confidence 689999999997653 45 677999999999999999999999999999999999 99999999999987
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+.....|+.++||+|++.+|+.++.+|+.++... ....+.+.++++.+++...+...++.
T Consensus 68 ------------~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~- 128 (242)
T d1mv5a_ 68 ------------NISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG------DYTDEDLWQVLDLAFARSFVENMPDQ- 128 (242)
T ss_dssp ------------TTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTS------CSCHHHHHHHHHHHTCTTTTTSSTTG-
T ss_pred ------------cccHHHHHhheEEEccccccCCcchhhheeccccc------ccchhhHHHHHHHHHhhhhhccCccc-
Confidence 45667788899999999999988999999876431 11112222222222221100000000
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEcC-ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTHG-DLLSL 299 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH~-~~~~~ 299 (361)
......+.+.+||||||||++||||| ||||++||. ++|||+|||+ .....
T Consensus 129 -----~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~ 203 (242)
T d1mv5a_ 129 -----LNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD 203 (242)
T ss_dssp -----GGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH
T ss_pred -----ccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence 00012456678999999999999999 999999864 8999999993 44467
Q ss_pred cchhhHhhhhhhhcCCCCccccccC
Q 018083 300 TDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
||||+ +|++|+|++.|++++++..
T Consensus 204 ~D~i~-vl~~G~iv~~G~~~eLl~~ 227 (242)
T d1mv5a_ 204 ADKIY-FIEKGQITGSGKHNELVAT 227 (242)
T ss_dssp CSEEE-EEETTEECCCSCHHHHHHH
T ss_pred CCEEE-EEECCEEEEECCHHHHHhC
Confidence 99996 6999999999999999874
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.6e-45 Score=341.44 Aligned_cols=197 Identities=17% Similarity=0.219 Sum_probs=168.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|++ ++.++|++. . + ||||++. +|+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 3 l~v-~~~k~~g~~---~----~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~-----p~~G~I~~~G~~i~---- 63 (240)
T d2onka1 3 LKV-RAEKRLGNF---R----L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADIT---- 63 (240)
T ss_dssp EEE-EEEEEETTE---E----E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECT----
T ss_pred EEE-EEEEEECCE---E----E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECC----
Confidence 566 567888763 1 3 5999996 58999999999999999999999999 99999999999986
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
... ..++.++||||++.+++. +|.+||.+++. ..++.+.++++.++++.+++.+
T Consensus 64 -----------~~~--~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~---~~~~~~~~~~v~~~l~~~gl~~--------- 118 (240)
T d2onka1 64 -----------PLP--PERRGIGFVPQDYALFPHLSVYRNIAYGLR---NVERVERDRRVREMAEKLGIAH--------- 118 (240)
T ss_dssp -----------TSC--TTTSCCBCCCSSCCCCTTSCHHHHHHTTCT---TSCHHHHHHHHHHHHHTTTCTT---------
T ss_pred -----------cCC--HHHcCceeeccchhhcccchhhHhhhhhhc---ccCHHHHHHHHHHHHHhcCcHh---------
Confidence 111 235679999999999987 99999999875 3445667788999999999988
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
+++++|.+||||||||++||||| ||||++||+ |+|||+||| +++
T Consensus 119 --------~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~ 190 (240)
T d2onka1 119 --------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA 190 (240)
T ss_dssp --------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH
T ss_pred --------hhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 56999999999999999999999 999999864 899999999 688
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhh
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 336 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~ 336 (361)
..+||||+ +|++|++++.|+++++++.|. .+++.++..
T Consensus 191 ~~~adri~-vm~~G~ii~~G~~~el~~~~~-~~v~~fl~~ 228 (240)
T d2onka1 191 AMLADEVA-VMLNGRIVEKGKLKELFSAKN-GEVAEFLSA 228 (240)
T ss_dssp HHHCSEEE-EEETTEEEEEECHHHHHHSCC-SSHHHHGGG
T ss_pred HHhCCEEE-EEECCEEEEEecHHHHhcCCC-HHHHHHhCc
Confidence 89999996 599999999999999998764 455666554
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-46 Score=346.57 Aligned_cols=206 Identities=14% Similarity=0.126 Sum_probs=160.2
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++||+|+|+++.. .+ |++|||+|++||++||+||||||||||+++|+|+++ |++|+|+++|+++.
T Consensus 2 I~~~nvsf~Y~~~~~-~v---L~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~---- 68 (241)
T d2pmka1 2 ITFRNIRFRYKPDSP-VI---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLA---- 68 (241)
T ss_dssp EEEEEEEEESSTTSC-EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETT----
T ss_pred eEEEEEEEEeCCCCc-ce---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC-----CCCCEEEECCEEec----
Confidence 689999999975442 45 666999999999999999999999999999999999 99999999999986
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.+...++|+.++||+|++.+|..+|.+||.++.. .. ..+++..+++..++.+.+...+
T Consensus 69 -----------~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~---~~----~~~~~~~~~~~~~~~~~i~~~~---- 126 (241)
T d2pmka1 69 -----------LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP---GM----SVEKVIYAAKLAGAHDFISELR---- 126 (241)
T ss_dssp -----------TSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTST---TC----CHHHHHHHHHHHTCHHHHTTST----
T ss_pred -----------ccchhhhhceEEEEecccccCCccccccccccCc---cc----cHHHHHHHHHHHhhHHHHHhhh----
Confidence 4555667788999999999998899999998654 11 1222333333333221000000
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Ccccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSLT 300 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~~~a 300 (361)
.+........+..||||||||++||||| ||||++||. ++|+|+||| -.....|
T Consensus 127 --~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~ 204 (241)
T d2pmka1 127 --EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA 204 (241)
T ss_dssp --TGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTS
T ss_pred --cchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhC
Confidence 0000023667889999999999999999 999999763 899999999 4555789
Q ss_pred chhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 301 DRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 301 Dri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
|||+ +|++|+|++.|++++++..|...|
T Consensus 205 D~i~-vl~~G~Iv~~G~~~ell~~~~~~y 232 (241)
T d2pmka1 205 DRII-VMEKGKIVEQGKHKELLSEPESLY 232 (241)
T ss_dssp SEEE-EEETTEEEEEECHHHHHHSTTCHH
T ss_pred CEEE-EEECCEEEEECCHHHHHhCCCCHH
Confidence 9995 699999999999999998876444
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9.8e-46 Score=346.66 Aligned_cols=197 Identities=13% Similarity=0.163 Sum_probs=165.2
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
|.+|+++||+++|++ .+| |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 2 M~iL~v~nlsk~yg~---~~a---L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~-----p~~G~I~~~g~~i~~ 70 (254)
T d1g6ha_ 2 MEILRTENIVKYFGE---FKA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITN 70 (254)
T ss_dssp CEEEEEEEEEEEETT---EEE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred cceEEEEEEEEEECC---eEE---EcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc-----CCCcEEEECCEeccc
Confidence 668999999999976 467 555999999999999999999999999999999999 999999999999862
Q ss_pred ceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEE------------ecCCChhhhhhhcccc
Q 018083 163 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVI------------RRSDSSSLRNRMRCKA 228 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~------------~~~~~~~~~~~v~~~l 228 (361)
....+. +..++++||++.+++. ++.+|+.++.... .....+...+++.+++
T Consensus 71 ---------------~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 135 (254)
T d1g6ha_ 71 ---------------KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135 (254)
T ss_dssp ---------------CCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHH
T ss_pred ---------------hhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHH
Confidence 222222 2247889999998887 9999998864311 1122344556788889
Q ss_pred cccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------
Q 018083 229 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------------- 284 (361)
Q Consensus 229 ~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--------------- 284 (361)
+.+++.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 136 ~~~~l~~-----------------~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~ 198 (254)
T d1g6ha_ 136 EFLKLSH-----------------LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 198 (254)
T ss_dssp HHTTCGG-----------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HhcCcch-----------------hccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999987 45899999999999999999999 999999753
Q ss_pred -CccEEEEEc--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 285 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 285 -g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
|+|||+||| +++..+||||+ +|++|+|++.|++++++.
T Consensus 199 ~g~til~vsHdl~~~~~~~Drv~-vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 199 KGITFLIIEHRLDIVLNYIDHLY-VMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp TTCEEEEECSCCSTTGGGCSEEE-EEETTEEEEEEESHHHHH
T ss_pred CCCEEEEEeCcHHHHHHhCCEEE-EEeCCEEEEEecHHHHhh
Confidence 999999999 78889999996 599999999999988654
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-45 Score=344.01 Aligned_cols=200 Identities=11% Similarity=0.134 Sum_probs=158.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++.|+++||+|+|++.....+ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|+++.
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~-----p~~G~I~i~g~~i~- 79 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLV---LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ-----PTGGQLLLDGKPLP- 79 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG-
T ss_pred cceEEEEEEEEECCCCCCCEe---EeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCcCEEEECCEecc-
Confidence 456999999999976433356 666999999999999999999999999999999999 99999999999986
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhh-----hhhccccccc--CCCc
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLR-----NRMRCKAHKI--GCEP 235 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~-----~~v~~~l~~~--gl~~ 235 (361)
.+.....++.+++|+|++.+|..++.+|+.++.... ....... ....+.++.+ ++..
T Consensus 80 --------------~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~ 143 (251)
T d1jj7a_ 80 --------------QYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQK--PTMEEITAAAVKSGAHSFISGLPQGYDT 143 (251)
T ss_dssp --------------GBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSC--CCHHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred --------------hhhhHHHHHHhhhccccccccCcchhhhhhhhhccc--chHHHHHHHHHHHHHHHHHHhccccchh
Confidence 455556777899999999998889999999875411 0101111 1111222222 3333
Q ss_pred ceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEE
Q 018083 236 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 289 (361)
Q Consensus 236 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvI 289 (361)
.+++.+.+||||||||++||||| ||||++||. ++|+|
T Consensus 144 -----------------~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi 206 (251)
T d1jj7a_ 144 -----------------EVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVL 206 (251)
T ss_dssp -----------------BCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEE
T ss_pred -----------------hHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEE
Confidence 23778899999999999999999 999999753 78999
Q ss_pred EEEcC-ccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 290 VVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 290 iiTH~-~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+|||+ ...+.||||+ +|++|+|++.|++++++..+
T Consensus 207 ~itH~l~~~~~aDrI~-vl~~G~iv~~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 207 LITQHLSLVEQADHIL-FLEGGAIREGGTHQQLMEKK 242 (251)
T ss_dssp EECSCHHHHHTCSEEE-EEETTEEEEEECHHHHHHHT
T ss_pred EEeCCHHHHHhCCEEE-EEECCEEEEECCHHHHHhCC
Confidence 99993 4457799995 69999999999999998754
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.4e-45 Score=343.01 Aligned_cols=197 Identities=14% Similarity=0.194 Sum_probs=161.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
..+|+++||+++|++ .+| |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 4 d~~Lev~~l~k~yg~---~~a---l~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~-----p~~G~I~~~G~~i~~ 72 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGA---IHA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp SEEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred ceEEEEeeEEEEECC---EEE---EeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEeccccccc
Confidence 458999999999976 467 556999999999999999999999999999999999 999999999999862
Q ss_pred ceEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhccccccc-CCCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~-gl~~~~~~ 239 (361)
..... .+..+++++|+..+|+. ++.+|+.++.... ..+...++.+.++++.+ ++.+
T Consensus 73 ---------------~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~---- 131 (240)
T d1ji0a_ 73 ---------------KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR--KDKEGIKRDLEWIFSLFPRLKE---- 131 (240)
T ss_dssp ---------------CCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC--CCSSHHHHHHHHHHHHCHHHHT----
T ss_pred ---------------ccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhc--CCHHHHHHHHHHHHHHhhChHH----
Confidence 11111 12346778898888877 8999988766422 23344455556666655 5666
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH- 293 (361)
.+++++.+||||||||++||||| ||||++||+ |+|||++||
T Consensus 132 -------------~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~ 198 (240)
T d1ji0a_ 132 -------------RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198 (240)
T ss_dssp -------------TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred -------------HHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 45899999999999999999999 999999764 899999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+++.++||||+ +|++|++++.|++++++++|
T Consensus 199 l~~~~~~~drv~-vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 199 ALGALKVAHYGY-VLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp HHHHHHHCSEEE-EEETTEEEEEEEHHHHHTCH
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHhcCH
Confidence 68889999996 59999999999999998754
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=8.1e-46 Score=347.22 Aligned_cols=203 Identities=12% Similarity=0.131 Sum_probs=163.2
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
-|+++||+|+|+++. .++ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 16 ~I~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~--- 83 (255)
T d2hyda1 16 RIDIDHVSFQYNDNE-API---LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-----VTSGQILIDGHNIK--- 83 (255)
T ss_dssp CEEEEEEEECSCSSS-CCS---EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC-----CSEEEEEETTEEGG---
T ss_pred EEEEEEEEEEeCCCC-Ccc---eeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC-----ccccccccCCEEcc---
Confidence 599999999997654 246 666999999999999999999999999999999999 99999999999986
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+...++|..++||+|++.+|..||.+||.++.. ....+++.++++.+++.+.+.+.++.+
T Consensus 84 ------------~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~-------~~~~~~~~~al~~~~l~~~i~~lp~gl 144 (255)
T d2hyda1 84 ------------DFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-------TATDEEVVEAAKMANAHDFIMNLPQGY 144 (255)
T ss_dssp ------------GSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS-------SCCHHHHHHHHHHTTCHHHHHTSTTGG
T ss_pred ------------cCCHHHhhheeeeeeccccCCCCCHHHHHhccCc-------CCCHHHHHHHHHHhCCHHHHHhccccc
Confidence 4556677888999999999998899999998754 122345556666666544210000000
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Cccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 299 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~~~ 299 (361)
.......+.+||||||||++||||| ||||++||. ++|+|+||| ......
T Consensus 145 ------~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~ 218 (255)
T d2hyda1 145 ------DTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH 218 (255)
T ss_dssp ------GCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT
T ss_pred ------cchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 0022456778999999999999999 999999753 899999999 455678
Q ss_pred cchhhHhhhhhhhcCCCCccccccCC
Q 018083 300 TDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
||||+ +|++|+|++.|++++++..+
T Consensus 219 ~D~ii-~l~~G~iv~~G~~~eLl~~~ 243 (255)
T d2hyda1 219 ADKIV-VIENGHIVETGTHRELIAKQ 243 (255)
T ss_dssp CSEEE-EEETTEEEEEECHHHHHHTT
T ss_pred CCEEE-EEECCEEEEECCHHHHHhCC
Confidence 99995 69999999999999998864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.4e-45 Score=339.73 Aligned_cols=205 Identities=11% Similarity=0.144 Sum_probs=160.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.+-|+++||+|+|++.. .++ |++|||+|++||++|||||||||||||+++|+|+++ |++|+|+++|+++.
T Consensus 11 ~g~I~~~nvsf~Y~~~~-~~~---L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~- 80 (253)
T d3b60a1 11 TGDLEFRNVTFTYPGRE-VPA---LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-----IDEGHILMDGHDLR- 80 (253)
T ss_dssp CCCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC-----CSEEEEEETTEETT-
T ss_pred ceEEEEEEEEEEeCCCC-Cce---eeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC-----CCccEEEECCcccc-
Confidence 34699999999997654 256 666999999999999999999999999999999999 99999999999986
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.+...+++..++||+|++.+|..++.+|+.++.. .....+++.++++.+++.+.+...++
T Consensus 81 --------------~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~------~~~~~~~i~~a~~~~~l~~~i~~l~~ 140 (253)
T d3b60a1 81 --------------EYTLASLRNQVALVSQNVHLFNDTVANNIAYART------EEYSREQIEEAARMAYAMDFINKMDN 140 (253)
T ss_dssp --------------TBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT------SCCCHHHHHHHHHTTTCHHHHHHSTT
T ss_pred --------------hhhhhhhhheEEEEeeccccCCcchhhhhhhcCc------ccCCHHHHHHHHHHHhHHHHHHhccc
Confidence 4555667788999999999998899999987642 11223444444555444321100000
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Cccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLL 297 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~ 297 (361)
. -.+.+.+.+.+||||||||++||||| ||||++||. ++|+|+||| -...
T Consensus 141 g------l~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~ 214 (253)
T d3b60a1 141 G------LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 214 (253)
T ss_dssp G------GGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGT
T ss_pred c------chhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH
Confidence 0 00023567889999999999999999 999999763 899999999 3455
Q ss_pred cccchhhHhhhhhhhcCCCCccccccC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
..||||+ +|++|+|++.|++++++..
T Consensus 215 ~~~D~v~-vl~~G~Iv~~G~~~eLl~~ 240 (253)
T d3b60a1 215 EQADEIV-VVEDGIIVERGTHSELLAQ 240 (253)
T ss_dssp TTCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred HhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 7899995 6999999999999999875
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-44 Score=335.97 Aligned_cols=199 Identities=15% Similarity=0.128 Sum_probs=167.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.|+++||+++|+.. +| |++|||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 aI~v~nl~k~yg~~---~v---l~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~-----p~~G~i~i~G~~i~~-- 68 (238)
T d1vpla_ 2 AVVVKDLRKRIGKK---EI---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVVE-- 68 (238)
T ss_dssp CEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTT--
T ss_pred CEEEEeEEEEECCE---EE---EccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECcEeccc--
Confidence 48899999999863 56 566999999999999999999999999999999999 999999999998751
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.....+..++++||...+++. ++.+|+.+....+ ..+..+..+.+..+++.+++.+
T Consensus 69 --------------~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 125 (238)
T d1vpla_ 69 --------------EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY-ASSSSEIEEMVERATEIAGLGE-------- 125 (238)
T ss_dssp --------------CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCGG--------
T ss_pred --------------ChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhCCCHH--------
Confidence 112345668888888777666 7888887654322 2344666778888999999988
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||+ |+|||++|| +++
T Consensus 126 ---------~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~ 196 (238)
T d1vpla_ 126 ---------KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV 196 (238)
T ss_dssp ---------GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred ---------HHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45899999999999999999999 999999763 899999999 688
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
..+||||+ +|++|++++.|+++++...+....
T Consensus 197 ~~~~drv~-vl~~G~iv~~g~~~el~~~~~~~~ 228 (238)
T d1vpla_ 197 EFLCDRIA-LIHNGTIVETGTVEELKERYKAQN 228 (238)
T ss_dssp TTTCSEEE-EEETTEEEEEEEHHHHHHHTTCSS
T ss_pred HHhCCEEE-EEECCEEEEEcCHHHHHhccCCch
Confidence 99999996 599999999999999987655443
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-39 Score=301.10 Aligned_cols=186 Identities=15% Similarity=0.129 Sum_probs=139.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++| + |++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++....
T Consensus 3 il~~~dv~~~~-------~---l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~------~~~G~I~~~g~~i~~~~ 66 (231)
T d1l7vc_ 3 VMQLQDVAEST-------R---LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------SGKGSIQFAGQPLEAWS 66 (231)
T ss_dssp EEEEEEECCTT-------T---SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC------CCSSEEEESSSBGGGSC
T ss_pred EEEEECcccCc-------e---ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------CCceEEEECCEECCcCC
Confidence 68999998765 2 66799999999999999999999999999999965 57899999999875211
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHH-HHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINM-IKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l-~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
....+...++++|+... +..++.+++.++. ......+.+.++++.+++.+
T Consensus 67 ---------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~l~~-------- 117 (231)
T d1l7vc_ 67 ---------------ATKLALHRAYLSQQQTPPFATPVWHYLTLHQ------HDKTRTELLNDVAGALALDD-------- 117 (231)
T ss_dssp ---------------HHHHHHHEEEECSCCCCCSSCBHHHHHHHHC------SCTTCHHHHHHHHHHTTCTT--------
T ss_pred ---------------HHHHHhhceeeeccccCCccccHHHHhhhcc------chhhHHHHHHHHHHhcCCHh--------
Confidence 00111111222222110 1112223333221 12344566778888999988
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc----------------CCCceeecC----------------CccEEEE
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVV 291 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----------------DEPt~~L~~----------------g~tvIii 291 (361)
++++++.+||||||||++||||| ||||++||. |+|||++
T Consensus 118 ---------~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~v 188 (231)
T d1l7vc_ 118 ---------KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMS 188 (231)
T ss_dssp ---------TTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred ---------HhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45899999999999999999963 999999763 9999999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
|| +.+..+|||++ +|++|++++.|++++++..|
T Consensus 189 tHdl~~~~~~~dri~-vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 189 SHDLNHTLRHAHRAW-LLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp CCCHHHHHHHCSBCC-BEETTEECCCSBHHHHSCHH
T ss_pred eCCHHHHHHHCCEEE-EEECCEEEEECCHHHHhCCh
Confidence 99 58899999996 59999999999999998765
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.4e-38 Score=300.21 Aligned_cols=181 Identities=15% Similarity=0.084 Sum_probs=132.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
..++++|+++.+ . ++ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+
T Consensus 37 ~~i~~~~~~~~g--~---pv---L~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~----- 98 (281)
T d1r0wa_ 37 NNVSFSHLCLVG--N---PV---LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-----ASEGIIKHSGR----- 98 (281)
T ss_dssp ---CHHHHHHTT--C---EE---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEECCSC-----
T ss_pred CcEEEEEcCCCC--C---eE---EeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc-----CCCcEEEECCE-----
Confidence 346667766532 2 45 777999999999999999999999999999999999 99999998872
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhc---ccccccCCCcceeEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMR---CKAHKIGCEPSVIRK 240 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~---~~l~~~gl~~~~~~~ 240 (361)
++|++|++.+|+.++.+|+.++... .....++.++ .......+....
T Consensus 99 -----------------------i~~v~Q~~~l~~~tv~eni~~~~~~----~~~~~~~~~~~~~~~~~i~~l~~~~--- 148 (281)
T d1r0wa_ 99 -----------------------VSFCSQFSWIMPGTIKENIIFGVSY----DEYRYKSVVKACQLQQDITKFAEQD--- 148 (281)
T ss_dssp -----------------------EEEECSSCCCCSEEHHHHHTTTSCC----CHHHHHHHHHHTTCHHHHTTSTTGG---
T ss_pred -----------------------EEEEeccccccCceeeccccccccc----cchHHHHHHHHHHhHHHHHhchhhh---
Confidence 4556777777777889999887531 1111111111 001111121100
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-C
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-G 294 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-~ 294 (361)
...+.+.+.+||||||||++||||| ||||++||. ++|+|+||| .
T Consensus 149 ----------~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~ 218 (281)
T d1r0wa_ 149 ----------NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 218 (281)
T ss_dssp ----------GCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH
T ss_pred ----------hhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechH
Confidence 0023566778999999999999999 999999753 899999999 3
Q ss_pred ccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
...+.||||+ +|++|+|++.|++++++.
T Consensus 219 ~~l~~aDrI~-vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 219 EHLRKADKIL-ILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp HHHHTCSEEE-EEETTEEEEEECHHHHHH
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHHhc
Confidence 5567899996 599999999999999875
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=9.6e-36 Score=269.11 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=118.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.|+++||++.|+. ++ |++|||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~lev~~ls~~y~~----~v---l~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~-----p~~G~I~~~g~~i~~-- 67 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK----PV---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPITK-- 67 (200)
T ss_dssp EEEEEEEEEESSS----EE---EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGGG--
T ss_pred eEEEEEEEEEeCC----eE---EeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc-----cCCCEEEECCEehhH--
Confidence 4899999999943 45 666999999999999999999999999999999999 999999999988751
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.+..+++++|+..++.. ++.+++.+.... ...+..++++.++++.+++.+
T Consensus 68 ------------------~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~---~~~~~~~~~~~~~l~~~~~~~-------- 118 (200)
T d1sgwa_ 68 ------------------VKGKIFFLPEEIIVPRKISVEDYLKAVASL---YGVKVNKNEIMDALESVEVLD-------- 118 (200)
T ss_dssp ------------------GGGGEEEECSSCCCCTTSBHHHHHHHHHHH---TTCCCCHHHHHHHHHHTTCCC--------
T ss_pred ------------------hcCcEEEEeecccCCCCcCHHHHHHHHHHh---cCCccCHHHHHHHHHHcCCcc--------
Confidence 01112223332222111 223333221110 011222345666777777755
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEcCccccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTHGDLLSL 299 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH~~~~~~ 299 (361)
+++++.+||||||||++||||| ||||++||. ..++++++|.....+
T Consensus 119 ----------~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l~~ 188 (200)
T d1sgwa_ 119 ----------LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSY 188 (200)
T ss_dssp ----------TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTT
T ss_pred ----------cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechhhh
Confidence 2567889999999999999999 999999874 233334444222468
Q ss_pred cchhhHhhhh
Q 018083 300 TDRARIRTYL 309 (361)
Q Consensus 300 aDri~vvl~~ 309 (361)
||++. +|++
T Consensus 189 ~D~~~-~l~~ 197 (200)
T d1sgwa_ 189 CDVNE-NLHK 197 (200)
T ss_dssp SSEEE-EGGG
T ss_pred cchhh-heee
Confidence 99995 4764
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.44 E-value=6.5e-15 Score=125.95 Aligned_cols=56 Identities=13% Similarity=0.017 Sum_probs=44.9
Q ss_pred Cchhhhhhhhhhhhcc---------CCCcee--------------ec-CCccEEEEEc-CccccccchhhHhhhhhhhcC
Q 018083 260 DSDVEKQYNQIVATTF---------NCPYLS--------------FR-DDKPVVVVTH-GDLLSLTDRARIRTYLGELLG 314 (361)
Q Consensus 260 ~LSGGqrQRvaIArAL---------DEPt~~--------------L~-~g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~ 314 (361)
++|+|++++.++++++ |||... +. .+.|+|+++| .....+||++. .+.+|+++.
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~-~~~~~~i~~ 159 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIR-RLPGAVLIE 159 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHH-TCTTCEEEE
T ss_pred hhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHHHHhhceEE-EEeCCEEEE
Confidence 5899999999999987 887543 12 3789999999 66778899996 599999876
Q ss_pred CC
Q 018083 315 IP 316 (361)
Q Consensus 315 ~g 316 (361)
.+
T Consensus 160 v~ 161 (178)
T d1ye8a1 160 LT 161 (178)
T ss_dssp CC
T ss_pred EC
Confidence 54
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=6.7e-07 Score=74.79 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=30.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++.+|++.+| +++|+|||||||||++.+|.-++-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 55577888777 899999999999999999987765
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=1.4e-05 Score=65.64 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=22.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|+|++|||||||++.|..-+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998876
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=1.8e-05 Score=65.15 Aligned_cols=34 Identities=32% Similarity=0.539 Sum_probs=27.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 157 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 157 (361)
.+.|+||+|||||||++.++..+. ...+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~-----~~~~~v~~~~ 36 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLK-----SSGVPVDGFY 36 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-----HTTCCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-----HCCCEEEEEE
Confidence 488999999999999999999998 5545554443
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.45 E-value=2.1e-05 Score=66.62 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.7
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|.++.|+||||||||||++.|..-++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999987765
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.44 E-value=2.4e-05 Score=64.26 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=25.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|-++.|+|++||||||+.++|+..+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999999998875
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.42 E-value=2.2e-05 Score=64.75 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.4
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.|.+++|.||+||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999988764
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.40 E-value=2.2e-05 Score=69.93 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=25.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
+|.+.+++|+||+|||||+|.|.+-.. ...|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~-----~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC-----CC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh-----hhccCccc
Confidence 478999999999999999999988665 45577653
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.40 E-value=3.4e-05 Score=69.84 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=38.2
Q ss_pred ccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cccccccchhh
Q 018083 257 MEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 304 (361)
Q Consensus 257 ~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~ 304 (361)
....+|+|+|+..+++..+ |||.++|++ +.-||++|| ..+...+|++.
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLH 292 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEE
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEE
Confidence 4557999999998777654 999988643 778999999 67778889884
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=3.5e-05 Score=63.37 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=25.4
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.+.++.|+||+||||||+.+.|+..+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5678999999999999999999998775
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.22 E-value=6.2e-05 Score=61.24 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++.|.||+||||||+++.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998875
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.22 E-value=5.7e-05 Score=62.65 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=22.3
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|+|++|||||||++.|...+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988877
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.22 E-value=4.4e-05 Score=62.72 Aligned_cols=25 Identities=40% Similarity=0.751 Sum_probs=22.8
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..++|+||.|||||||++.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998875
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.22 E-value=4.6e-05 Score=71.41 Aligned_cols=49 Identities=10% Similarity=-0.016 Sum_probs=38.5
Q ss_pred ccCCchhhhhhhhhhhhcc-------------CCCceeecC----------------CccEEEEEc-CccccccchhhH
Q 018083 257 MEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 305 (361)
Q Consensus 257 ~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~v 305 (361)
....||||||.++++|-.+ |||+++|++ +.-+|++|| ..++..||+.+.
T Consensus 329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~ 407 (427)
T d1w1wa_ 329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVG 407 (427)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEE
T ss_pred hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEE
Confidence 4456899999998887543 999998653 456999999 678888999753
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.18 E-value=6.8e-05 Score=61.63 Aligned_cols=28 Identities=32% Similarity=0.670 Sum_probs=25.1
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|++-.++|.||+||||||+.+.|+.-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5677899999999999999999988765
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.16 E-value=6.7e-05 Score=61.41 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.6
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999999886
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.16 E-value=6.2e-05 Score=63.00 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-++||-||+|||||||.+.|...+.
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998876
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.13 E-value=6.4e-05 Score=63.80 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|++|||||||+|.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999984
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=7.7e-05 Score=59.87 Aligned_cols=24 Identities=29% Similarity=0.762 Sum_probs=21.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|+||+||||||+.+.|+..+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 477899999999999999998775
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.09 E-value=2.6e-05 Score=69.73 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
+|.+.+++|+||+|||||+|+|.+-.. -..|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~-----~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH-----hhhccccc
Confidence 467889999999999999999998665 55677763
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.07 E-value=9.1e-05 Score=59.76 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.2
Q ss_pred eEEEEEccCCCCcchhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++.|.||+|||||||++.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.0001 Score=64.21 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=24.1
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|.++.|+||||||||||++.|..-++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999887664
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.02 E-value=0.00012 Score=60.30 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=23.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++|.|+.||||||+++.|+..+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998876
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.00 E-value=9.7e-05 Score=60.36 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+||+||||||+.+.|+--+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 377999999999999999987664
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=6.3e-05 Score=63.00 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=24.7
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|-++.|+|++||||||+.+.|+..+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999998775
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.88 E-value=0.00014 Score=60.48 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|++|+|||||+|.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.83 E-value=0.00017 Score=59.73 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+++|+|+.|||||||+|.|.|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.82 E-value=0.00025 Score=60.12 Aligned_cols=29 Identities=17% Similarity=0.485 Sum_probs=25.2
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-++-.++.|+||.||||||+.+.|+.-+.
T Consensus 5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35567899999999999999999988774
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.00019 Score=61.63 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=22.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++||.|++|||||||.+.|.-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999988775
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.81 E-value=0.00014 Score=61.07 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEccCCCCcchhhhhhhhhh
Q 018083 120 LLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+||+|+.++|||||+|.|.|--
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999997743
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.80 E-value=0.00026 Score=59.14 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
..+=.+||+|+.|+|||||+|+|.|-
T Consensus 6 ~~~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 6 TDAIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34457999999999999999999874
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.79 E-value=0.0002 Score=59.31 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
+++|+|.+|+|||||+|+|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.78 E-value=0.00023 Score=60.16 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+..+++|+||.||||||+.+.|+.-+.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 446899999999999999999987664
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.77 E-value=0.00022 Score=57.08 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.9
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998874
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.76 E-value=0.00023 Score=61.59 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=21.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|+||.|||||||++.|.....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 689999999999999999987654
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.75 E-value=0.00022 Score=60.40 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=20.4
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
+++|+|+.|||||||+|.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.73 E-value=0.00023 Score=59.35 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.7
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
+++|+|++|+|||||+|.|.|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999875
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.72 E-value=0.00025 Score=56.98 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=19.4
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|++|||||||++.+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.72 E-value=0.00026 Score=59.65 Aligned_cols=27 Identities=37% Similarity=0.767 Sum_probs=23.7
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
|+|-.+.|+||.||||||+.+.|+.-+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 567788999999999999999999544
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.00026 Score=57.54 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
|=.++|+|+.|||||||+|.|.|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998754
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.71 E-value=0.00024 Score=60.24 Aligned_cols=23 Identities=30% Similarity=0.769 Sum_probs=20.6
Q ss_pred EEEEccCCCCcchhhhhhhhhhc
Q 018083 120 LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|+||||||||||++.|..-++
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999977664
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.68 E-value=0.00027 Score=58.08 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+--.++|||++|||||||++.|.+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33478899999999999999987644
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.65 E-value=0.0003 Score=56.81 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.7
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|++|||||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998763
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.0003 Score=59.59 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.|+||||||||||++.|..-.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 4689999999999999999887654
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.62 E-value=0.0003 Score=59.92 Aligned_cols=23 Identities=35% Similarity=0.729 Sum_probs=20.6
Q ss_pred EEEEccCCCCcchhhhhhhhhhc
Q 018083 120 LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|+||||||||||++.|...++
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999887665
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.00025 Score=58.42 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.-.++|+|++++|||||+|+|.+--
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999998853
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.60 E-value=0.00037 Score=57.47 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=22.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.|.|++||||||+++.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999998886
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.56 E-value=0.00014 Score=68.01 Aligned_cols=27 Identities=37% Similarity=0.683 Sum_probs=22.3
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~ 138 (361)
|+| ..+.+.+|+|||||||||++.+|.
T Consensus 20 i~f--~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGF--GESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEC--TTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeC--CCCCEEEEECCCCCCHHHHHHHHH
Confidence 445 444489999999999999999985
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.52 E-value=0.00025 Score=59.20 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.2
Q ss_pred EEEEccCCCCcchhhhhhhhhh
Q 018083 120 LLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+||+|..++|||||+|.|.|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998754
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.52 E-value=0.00039 Score=57.46 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.0
Q ss_pred EEEEccCCCCcchhhhhhhhhhc
Q 018083 120 LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.|+|++||||||+.++|+..+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999988875
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.51 E-value=0.0006 Score=59.75 Aligned_cols=25 Identities=44% Similarity=0.527 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.|.||.|||||||+++|++-+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3488999999999999999999876
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.47 E-value=0.00041 Score=57.57 Aligned_cols=24 Identities=13% Similarity=0.594 Sum_probs=21.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|+|++||||||+.+.|+.-+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999987765
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.47 E-value=0.00035 Score=58.00 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=25.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
=|++|+++.|.||+|||||||+.-++.-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999988776544
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.47 E-value=0.00047 Score=58.15 Aligned_cols=25 Identities=16% Similarity=0.513 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++++|.+|||||||++.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999998775
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.46 E-value=0.00038 Score=58.62 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.3
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.|+||.||||||+.+.|+--+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999987664
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.43 E-value=0.00061 Score=57.24 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=23.0
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
+.-++-+++.++|++||||||+++.+..
T Consensus 9 ~~~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 9 LLSPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446678999999999999999987643
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.42 E-value=0.00033 Score=59.39 Aligned_cols=29 Identities=24% Similarity=0.551 Sum_probs=25.0
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.++.++.|+||.||||||+.+.|+.-+.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35667899999999999999999987664
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.41 E-value=0.00021 Score=58.05 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||+|+|.|--
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998854
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.39 E-value=0.00053 Score=56.82 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=21.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|+||.||||||+.+.|+.-+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 378999999999999999987664
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.00075 Score=62.41 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=23.3
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
=++||-|++|||||||.+.|..++.
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCCcHHHHHHHHHHh
Confidence 4899999999999999999999885
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.36 E-value=0.00055 Score=56.47 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=20.7
Q ss_pred EEEEccCCCCcchhhhhhhhhhc
Q 018083 120 LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.|+|+.||||||+.++|+.-+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 66889999999999999998775
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.00059 Score=57.37 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=21.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.|+||.||||||..+.|+.-+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987664
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.33 E-value=0.00058 Score=55.80 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=20.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|+.|||||||++.|.+-..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 488999999999999999887543
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.29 E-value=0.00084 Score=56.44 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.5
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.-+++|-|+.||||||+++.|...+.
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456899999999999999999998775
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.27 E-value=0.00063 Score=60.88 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|.+|+|||||+|.|.|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.24 E-value=0.00071 Score=57.91 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|-||+||||||+.+.|+.-+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998775
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.21 E-value=0.00071 Score=56.91 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.1
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
++||.|++||||||+++.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998854
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.00085 Score=57.88 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=24.4
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.+++|-|+-||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999999875
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.20 E-value=0.00077 Score=56.31 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=21.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|+||.||||||+.+.|+.-+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999998774
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.00077 Score=57.24 Aligned_cols=34 Identities=18% Similarity=0.423 Sum_probs=26.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhhcccccccccceee
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 154 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~ 154 (361)
+++|.||.||||||+.+.|+.-+.- ...++|.++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl--~~iStGdLl 38 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQW--HLLDSGAIY 38 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC--EEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cEECHHHHH
Confidence 8999999999999999999987751 114566664
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.17 E-value=0.00079 Score=55.24 Aligned_cols=25 Identities=16% Similarity=0.469 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCCcchhhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
+-=.++|+|..|||||||++.|.+-
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3346899999999999999998773
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.13 E-value=0.0017 Score=54.76 Aligned_cols=20 Identities=60% Similarity=0.845 Sum_probs=18.4
Q ss_pred EEEEccCCCCcchhhhhhhh
Q 018083 120 LLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~g 139 (361)
++|+|+.|||||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.00095 Score=55.49 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|+||.||||||..+.|+--+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477999999999999999987664
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.03 E-value=0.00098 Score=56.64 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|||||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999773
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.02 E-value=0.0011 Score=55.29 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=21.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|+||.||||||+.+.|+.-+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999987764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.02 E-value=0.00096 Score=55.85 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEccCCCCcchhhhhhhhhh
Q 018083 120 LLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+||+|+.+||||||+|.|.+.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 9999999999999999998754
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.0024 Score=52.16 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.3
Q ss_pred eEEEEEccCCCCcchhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~g 139 (361)
-.++|+|+.|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999999764
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.01 E-value=0.00077 Score=62.61 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=23.7
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+..+.|.||.|||||||+++|.+..+
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEeeccccchHHHHHHhhhcc
Confidence 44589999999999999999999997
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=0.0013 Score=58.36 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=23.5
Q ss_pred eccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 109 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 109 ~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
|++++ +...++.|.|||.|||||++|.++=
T Consensus 34 di~l~-~~~~~~iiTGpN~~GKSt~lk~i~l 63 (234)
T d1wb9a2 34 PLNLS-PQRRMLIITGPNMGGKSTYMRQTAL 63 (234)
T ss_dssp EEEEC-SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEC-CCceEEEEeccCchhhHHHHHHHHH
Confidence 35555 2346899999999999999999854
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.97 E-value=0.0025 Score=52.25 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=18.9
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999986643
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.96 E-value=0.0011 Score=60.60 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=19.9
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++||.|+|||||||+.+.|..++.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999999886
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.93 E-value=0.0013 Score=54.40 Aligned_cols=21 Identities=48% Similarity=0.773 Sum_probs=9.0
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|..|||||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987765
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.92 E-value=0.0013 Score=53.78 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=18.7
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|++|||||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998865
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.0014 Score=60.90 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.-++||.||.|||||||++.|...+.
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999988776
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0031 Score=51.75 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=18.9
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|+.|+|||||++.+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0017 Score=58.19 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=24.0
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+....++| +.|.||+|||||+|+++|+..+.
T Consensus 40 ~g~~~~~~--iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 40 LGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp ---CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCCCe--EEeeCCCCCCccHHHHHHHHHcC
Confidence 44455555 78999999999999999998775
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.83 E-value=0.0015 Score=53.75 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=18.8
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 378999999999999998765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.81 E-value=0.002 Score=56.11 Aligned_cols=27 Identities=22% Similarity=0.635 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.+++++||+||||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999998777777665
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.80 E-value=0.0014 Score=56.05 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.5
Q ss_pred EEEEEccCCCCcchhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~ 138 (361)
++||.|+.||||||+++.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999875
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.0015 Score=53.50 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=19.0
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998765
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.77 E-value=0.0019 Score=55.90 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=32.4
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhccccccccc--ceeeecccccC
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER--AQVTYNSSVGD 161 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~--G~I~i~G~~i~ 161 (361)
=++|-++-|.|.+|||||||.+.|..-+. ... -.+.++|..+.
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~-----~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEHQLV-----RDRRVHAYRLDGDNIR 65 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH-----HHHCCCEEEECHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HhcCceEEEEcchHHH
Confidence 37889999999999999999999986553 122 24567776553
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.77 E-value=0.0015 Score=53.73 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=18.4
Q ss_pred EEEEccCCCCcchhhhhhhh
Q 018083 120 LLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~g 139 (361)
++++|+.|||||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 88999999999999998765
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.76 E-value=0.0014 Score=53.95 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=19.5
Q ss_pred eEEEEEccCCCCcchhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~g 139 (361)
-.++|+|+.|||||||++.+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999998855
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.74 E-value=0.0018 Score=56.28 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=22.6
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.|.||+|+||||++++|+.-+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999776
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.73 E-value=0.0016 Score=56.22 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|.||+|+|||||+++|+.-+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Confidence 378999999999999999998765
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.72 E-value=0.0018 Score=55.23 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.7
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|.+++|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999998775
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.72 E-value=0.0017 Score=54.16 Aligned_cols=24 Identities=33% Similarity=0.735 Sum_probs=20.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|+||.||||||+.+.|+--+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g 27 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFH 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999987664
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.71 E-value=0.0017 Score=55.05 Aligned_cols=24 Identities=42% Similarity=0.739 Sum_probs=21.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+||.||||||+.+.|+--+.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHC
Confidence 678999999999999999987664
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0019 Score=55.76 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=25.4
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|-+++|-|+-||||||+++.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999988775
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.69 E-value=0.0017 Score=59.44 Aligned_cols=28 Identities=36% Similarity=0.765 Sum_probs=23.4
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++ -++++||+|||||+|+|+|+..+.
T Consensus 47 ~~~~-~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 47 VTPK-NILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCC-CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCc-eEEEECCCCCCHHHHHHHHhhccc
Confidence 3444 566899999999999999999875
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.69 E-value=0.0013 Score=56.16 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~ 138 (361)
=+++|.++.|.||+|||||||+.-++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999987664
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0031 Score=54.99 Aligned_cols=31 Identities=23% Similarity=0.554 Sum_probs=23.9
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++=++-.+++++||+|+||||.+-=|+..+.
T Consensus 4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp CCSCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3334446899999999999988777777665
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.67 E-value=0.0022 Score=55.46 Aligned_cols=24 Identities=38% Similarity=0.689 Sum_probs=22.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.+.||.|+|||||+++|+.-+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 378999999999999999999887
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.66 E-value=0.0019 Score=56.87 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.7
Q ss_pred eEEEEEccCCCCcchhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~g 139 (361)
+++.|.|||.|||||++|.++=
T Consensus 36 ~~~iiTGpN~~GKSt~lk~i~l 57 (224)
T d1ewqa2 36 ELVLITGPNMAGKSTFLRQTAL 57 (224)
T ss_dssp CEEEEESCSSSSHHHHHHHHHH
T ss_pred cEEEEECCCccccchhhhhhHH
Confidence 5899999999999999998754
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.63 E-value=0.0018 Score=53.52 Aligned_cols=21 Identities=43% Similarity=0.838 Sum_probs=18.7
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998765
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.62 E-value=0.0026 Score=52.26 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.8
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|.+|||||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998754
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.62 E-value=0.002 Score=52.56 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=18.4
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|+.|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999997764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.61 E-value=0.0017 Score=61.90 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|.+|+|||||+|+|.|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 489999999999999999999654
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.0023 Score=54.96 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=24.6
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
=|++|.++.|.||+|||||||.-.++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999887764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.54 E-value=0.0021 Score=55.75 Aligned_cols=23 Identities=43% Similarity=0.756 Sum_probs=21.3
Q ss_pred EEEEccCCCCcchhhhhhhhhhc
Q 018083 120 LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.+.||.|+|||||+++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999999776
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.54 E-value=0.0021 Score=55.67 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.+++|.||.|+|||||++.++.-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 356899999999999999998765544
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.47 E-value=0.0022 Score=55.10 Aligned_cols=23 Identities=35% Similarity=0.673 Sum_probs=20.9
Q ss_pred EEEEccCCCCcchhhhhhhhhhc
Q 018083 120 LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.|.||+|+|||||+++|+.-+.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHHc
Confidence 78999999999999999998653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0023 Score=52.78 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=18.4
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|++|||||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 378999999999999998754
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0023 Score=52.47 Aligned_cols=21 Identities=48% Similarity=0.653 Sum_probs=18.5
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|..|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.44 E-value=0.0024 Score=56.77 Aligned_cols=28 Identities=36% Similarity=0.700 Sum_probs=23.5
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.| +.|.||.|||||+|+++|+..+.
T Consensus 40 ~~~~g--iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 40 RIPKG--VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCce--EEEecCCCCChhHHHHHHHHHcC
Confidence 44555 78999999999999999998664
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.43 E-value=0.0041 Score=54.28 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=24.2
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++.=.+..+++++||+|+||||.+-=|+..+.
T Consensus 4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444566899999999999987666665554
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.0026 Score=54.56 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.0
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
++||+|..||||||+++.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999998753
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0025 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.3
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999988653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.0025 Score=52.99 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=18.6
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|+.|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 388999999999999998764
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.37 E-value=0.0025 Score=52.03 Aligned_cols=21 Identities=48% Similarity=0.763 Sum_probs=18.7
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++++|++|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.35 E-value=0.0028 Score=52.80 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=23.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhhcccccccccc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 151 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G 151 (361)
.+.|+|.+|||||||++.+. .... +.||-|
T Consensus 4 KivllG~~~vGKTsll~r~~-f~~~--~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR-IIHG--QDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHS--CCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHh-cCCC--CCCeee
Confidence 47899999999999999994 3332 237766
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0028 Score=52.10 Aligned_cols=21 Identities=43% Similarity=0.816 Sum_probs=19.0
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.0028 Score=51.54 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=18.8
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|..|||||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998865
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.34 E-value=0.0028 Score=52.65 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=18.6
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|..|||||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.32 E-value=0.0032 Score=52.50 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=27.9
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
...++|.+++|-|+=|||||||.|.++.-+.
T Consensus 28 ~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ccCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 3557999999999999999999999998876
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.31 E-value=0.0029 Score=55.08 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.9
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
++||+|..+||||||+++|.+-.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhhc
Confidence 59999999999999999998754
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.30 E-value=0.0032 Score=54.41 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=25.1
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|-+++|-|+-||||||++++|...+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999998776
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.28 E-value=0.0029 Score=56.31 Aligned_cols=31 Identities=26% Similarity=0.525 Sum_probs=25.6
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+..++| +.|.||.|||||+|+++++....
T Consensus 33 ~g~~~~~g--iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 33 IGVKPPRG--ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CCCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCce--eEEecCCCCCchHHHHHHHHHhC
Confidence 34455666 78999999999999999999775
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.0029 Score=51.99 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|+.|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 378999999999999999887543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.24 E-value=0.003 Score=51.30 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=18.2
Q ss_pred EEEEccCCCCcchhhhhhhh
Q 018083 120 LLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~g 139 (361)
++|+|+.|+|||||++.+..
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.23 E-value=0.0026 Score=54.84 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.8
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~ 138 (361)
=+++|.++.|.||+|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 37999999999999999999976543
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.22 E-value=0.0035 Score=56.09 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.-+.|.||+|||||+|+++|++.+.
T Consensus 42 ~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 42 KGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcchhHHHHHHHHhC
Confidence 3388999999999999999999886
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.0033 Score=51.31 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=18.6
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999988765
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.0045 Score=51.01 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=18.9
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|++|+|||||++.+..-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999887653
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.19 E-value=0.0049 Score=53.17 Aligned_cols=25 Identities=20% Similarity=0.534 Sum_probs=23.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.|.||.|+||||+++.|+..+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999886
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.18 E-value=0.0027 Score=53.93 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=24.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
=+++|+++.|.|++|+|||||+--++--
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3899999999999999999998777543
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.16 E-value=0.0045 Score=53.71 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
...+++++||+|+||||.+--|+..+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345889999999999998887877665
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.16 E-value=0.0037 Score=51.77 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=21.0
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
++--.++|+|++|||||||++.+.+-
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 33446889999999999999987543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.15 E-value=0.0051 Score=53.55 Aligned_cols=28 Identities=18% Similarity=0.526 Sum_probs=18.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+...+++++||+|+||||.+-=|+..+.
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999998777776665
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.14 E-value=0.0036 Score=51.15 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=18.7
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.12 E-value=0.0043 Score=54.92 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-+.|.||.|||||+|+++|+....
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHhhccc
Confidence 578999999999999999998765
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.09 E-value=0.0038 Score=52.54 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=22.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999998775
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.0038 Score=51.34 Aligned_cols=20 Identities=50% Similarity=0.808 Sum_probs=18.0
Q ss_pred EEEEccCCCCcchhhhhhhh
Q 018083 120 LLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~g 139 (361)
++|+|++|||||||++.+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987754
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=95.04 E-value=0.0033 Score=51.70 Aligned_cols=22 Identities=18% Similarity=0.528 Sum_probs=19.4
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|++|+|||||++.+..-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998643
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.04 E-value=0.0029 Score=53.54 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.3
Q ss_pred CCCCceEEEEEccCCCCcchhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRI 137 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I 137 (361)
=+++|+++.|.|++|+|||||+--+
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHH
Confidence 4899999999999999999998543
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.0041 Score=50.79 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.5
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.02 E-value=0.0031 Score=54.41 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=25.1
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
=|++|.++.|.||+|||||||+.-++--.
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999987765544
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.98 E-value=0.0042 Score=51.29 Aligned_cols=21 Identities=48% Similarity=0.797 Sum_probs=19.1
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|+.|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=0.0054 Score=55.82 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
=++||-|+.|||||||.+.|.-.+
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEeECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999886555
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.94 E-value=0.0033 Score=51.77 Aligned_cols=21 Identities=38% Similarity=0.721 Sum_probs=18.0
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|+.|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998754
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.94 E-value=0.0039 Score=51.36 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.7
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|..|+|||||++.+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=0.0038 Score=51.45 Aligned_cols=24 Identities=42% Similarity=0.703 Sum_probs=20.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 478999999999999999887543
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=0.0041 Score=51.10 Aligned_cols=20 Identities=40% Similarity=0.770 Sum_probs=18.3
Q ss_pred EEEEccCCCCcchhhhhhhh
Q 018083 120 LLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~g 139 (361)
++|+|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.91 E-value=0.0042 Score=53.31 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.8
Q ss_pred EEEEccCCCCcchhhhhhhhhhc
Q 018083 120 LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.|.||+|+||||++++|+.-+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 67999999999999999988765
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.89 E-value=0.0046 Score=54.64 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=27.3
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
|+++..=+.+|+++.|.|++|+|||||+.-|+-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 333555589999999999999999999887764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.83 E-value=0.0056 Score=56.58 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.-+++|.||.|||||||+..|...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999987654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.82 E-value=0.0045 Score=59.73 Aligned_cols=29 Identities=34% Similarity=0.770 Sum_probs=24.6
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.|- -+.+|||+|||||-|++.|++++.
T Consensus 46 ei~ks-NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 46 EVTPK-NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp TCCCC-CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccccc-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 44443 588999999999999999999885
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.0047 Score=50.58 Aligned_cols=21 Identities=52% Similarity=0.713 Sum_probs=18.7
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|+.|+|||||++.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998874
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=0.0055 Score=50.84 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.9
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988764
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.71 E-value=0.0057 Score=50.30 Aligned_cols=28 Identities=36% Similarity=0.617 Sum_probs=22.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhhcccccccccc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 151 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G 151 (361)
.++|||..|+|||||++.+..-.- |+.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~-----~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHE-----AGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHS-----CCCS
T ss_pred EEEEECCCCCCHHHHHHHHhhCCC-----CCcc
Confidence 478999999999999998765544 6655
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.64 E-value=0.0049 Score=53.28 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.7
Q ss_pred EEEEccCCCCcchhhhhhhhhhc
Q 018083 120 LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.|.||.|+||||++++++.-+.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~ 58 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIF 58 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhhc
Confidence 78999999999999999988653
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.62 E-value=0.0055 Score=50.29 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.7
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|..|||||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.59 E-value=0.0083 Score=56.87 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.-++.|.||.||||||++.++...+.
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 344899999999999999999988765
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.58 E-value=0.0057 Score=50.03 Aligned_cols=20 Identities=35% Similarity=0.743 Sum_probs=18.1
Q ss_pred EEEEccCCCCcchhhhhhhh
Q 018083 120 LLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~g 139 (361)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.53 E-value=0.0074 Score=54.05 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=23.1
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+++| .++++|.-.||||||+|+|+|.-
T Consensus 24 ~~~P---~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 24 LDLP---QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCC---EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCC---eEEEEcCCCCCHHHHHHHHhCCC
Confidence 4555 48899999999999999999954
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=94.52 E-value=0.0065 Score=49.78 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=18.6
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|..|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998754
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.51 E-value=0.0059 Score=52.22 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=20.8
Q ss_pred EEEEccCCCCcchhhhhhhhhhc
Q 018083 120 LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.|.||.|+||||++++|+.-+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhh
Confidence 67999999999999999998664
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.51 E-value=0.0071 Score=54.48 Aligned_cols=28 Identities=32% Similarity=0.579 Sum_probs=23.9
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
++++| .++++|.-.||||||+|+|.|.-
T Consensus 21 ~~~lP---~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 21 PLDLP---QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp TTCCC---EEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCCC---eEEEEeCCCCCHHHHHHHHhCCC
Confidence 45565 48899999999999999999955
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.0062 Score=49.65 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=18.4
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|..|+|||||++.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998754
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.45 E-value=0.0057 Score=55.94 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=23.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
--+.|+||.|+|||||++.|.++++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCC
Confidence 3589999999999999999999986
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.36 E-value=0.0066 Score=51.16 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-+||+|...+|||||++.|.|...
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEEeccCCcHHHHHHHHHhhhh
Confidence 379999999999999999998654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.33 E-value=0.01 Score=49.19 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=17.9
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999986644
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.0079 Score=50.00 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=19.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++++|+.|+|||||++.+.+-
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999977653
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.26 E-value=0.0077 Score=50.14 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=18.2
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 389999999999999988653
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.19 E-value=0.0055 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.|.||.|+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 466779999999999999999875
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.0077 Score=50.31 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.2
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|+.|+|||||++.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987654
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.10 E-value=0.0094 Score=50.46 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=22.3
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~ 138 (361)
.-+.| .|.-+.|.||||+|||||.-.+.
T Consensus 9 ~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 9 VLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 55566 56789999999999999986653
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.07 E-value=0.0098 Score=50.30 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=20.8
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~ 138 (361)
.-+.+. |.-++|.|+||+|||||.-.+.
T Consensus 8 ~~v~~~-g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 8 VLVDIY-GLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEET-TEEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEC-CEEEEEEeCCCCCHHHHHHHHH
Confidence 334443 5679999999999999886543
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.06 E-value=0.0087 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.6
Q ss_pred eEEEEEccCCCCcchhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++||.|+-||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.03 E-value=0.011 Score=55.45 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=28.3
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++++.++.+.||.|+|||||.++|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 578888999999999999999999999997
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.99 E-value=0.011 Score=48.72 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=22.9
Q ss_pred EEEEEccCCCCcchhhhhhhhhhcccccccccc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 151 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G 151 (361)
.+.|+|..|+|||||++.+..-... +.||-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGS--GVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSS--CCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCceee
Confidence 4789999999999999998654432 235544
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.97 E-value=0.011 Score=53.94 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=28.4
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.|-+|+..+|+|++|+|||||+..|+.-..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999999999988665
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.81 E-value=0.012 Score=53.77 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=22.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.++||+|+|||.|++.|+..+.
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCcchhHHHHHHHHhhcc
Confidence 3678999999999999999999886
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.78 E-value=0.01 Score=53.61 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+=-+++|+||-++|||||+|.|.|-..
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CEEEEEEECCCCCCHHHHHHHHcCCCC
Confidence 446999999999999999999998553
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.73 E-value=0.011 Score=51.00 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=22.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhhcccccccccc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 151 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G 151 (361)
.+.|+|++|+|||||++.+..-. +.||-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~----~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILH----VVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----CCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----cCCCCC
Confidence 57899999999999999874322 237766
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.47 E-value=0.011 Score=53.63 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.4
Q ss_pred EEEEccCCCCcchhhhhhhhhhc
Q 018083 120 LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+||||...||||||+|+|+|.-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~~ 25 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVDV 25 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC---
T ss_pred EeEECCCCCCHHHHHHHHHCCCC
Confidence 79999999999999999988643
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.25 E-value=0.016 Score=48.62 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=20.1
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRI 137 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I 137 (361)
.-+.+ .|.-+.|.|+||+|||||.-.+
T Consensus 9 ~~v~~-~g~gvli~G~sg~GKS~la~~l 35 (169)
T d1ko7a2 9 VLVDV-YGVGVLITGDSGIGKSETALEL 35 (169)
T ss_dssp EEEEE-TTEEEEEEESTTSSHHHHHHHH
T ss_pred EEEEE-CCEEEEEEeCCCCCHHHHHHHH
Confidence 33443 3567999999999999987543
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.018 Score=49.42 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++|=|+-||||||+++.|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999998775
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.93 E-value=0.017 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-++|+|..+||||||++.|...
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999999654
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=92.92 E-value=0.017 Score=50.46 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.0
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.+|+++.|.|+.|+|||||+-.|+--+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~i 53 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQI 53 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 459999999999999999998776543
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.76 E-value=0.019 Score=51.38 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=25.8
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
=|++|.++.|.||+|||||||+-.++....
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 578999999999999999999877766554
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.75 E-value=0.021 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.4
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
=.+||||...||||||+++|++.-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHST
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 359999999999999999999763
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=92.74 E-value=0.021 Score=53.42 Aligned_cols=29 Identities=38% Similarity=0.809 Sum_probs=24.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++++- +.++||+|+|||-|.|.|+.++.
T Consensus 65 ~~p~~n-iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 65 ELSKSN-ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp TCCCCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCCcc-eeeeCCCCccHHHHHHHHHhhcc
Confidence 556664 66889999999999999999875
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.53 E-value=0.027 Score=47.66 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=23.8
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|.=-++|+|.-.+|||||++.|.+...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 4444699999999999999999988664
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.51 E-value=0.024 Score=49.08 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-++.|.|.=|||||||++.+..-
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred CEEEEeeCCCCCHHHHHHHHHhc
Confidence 36889999999999999988764
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.19 E-value=0.032 Score=50.04 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=25.5
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
=++.|.++-|.||+|||||||+-.++....
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q 85 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 85 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHh
Confidence 689999999999999999999766655444
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.15 E-value=0.02 Score=50.80 Aligned_cols=29 Identities=34% Similarity=0.665 Sum_probs=23.7
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+++.++ +.+|+|||||||||++.+|.-++
T Consensus 20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~~~l 48 (308)
T d1e69a_ 20 IGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (308)
T ss_dssp EECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred EeCCCC-eEEEECCCCCcHHHHHHHHHHHh
Confidence 344455 88999999999999999996654
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.85 E-value=0.026 Score=50.61 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=18.4
Q ss_pred EEEEEccCCCCcchhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~ 138 (361)
.++|+|+.|||||||+.+|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 48999999999999999984
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.81 E-value=0.03 Score=49.88 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.9
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.+||||-..+|||||+++|++.-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999764
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.76 E-value=0.029 Score=50.55 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=18.9
Q ss_pred eEEEEEccCCCCcchhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~ 138 (361)
.-++|+|+.|||||||+..|.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 458999999999999999984
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.61 E-value=0.03 Score=50.15 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=26.8
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
=|+.|.++-|.||+|||||||+-.++....
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 578999999999999999999988877665
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.60 E-value=0.032 Score=47.51 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.+.||.|+||||+++.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 388999999999999999998775
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.41 E-value=0.034 Score=48.14 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|.||+|+||||++++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 367899999999999999988775
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.41 E-value=0.038 Score=51.45 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=19.6
Q ss_pred eEEEEEccCCCCcchhhhh-hhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNR-ISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~-I~gl~~ 142 (361)
..+.|+|++|||||++++. |..++.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~ 76 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLL 76 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHh
Confidence 4689999999999999864 444444
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=91.24 E-value=0.051 Score=49.91 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=24.6
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
...++| ++.++||.|||||.|.+.|++-..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHhc
Confidence 355666 566789999999999999999764
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=91.04 E-value=0.049 Score=46.17 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-+||+|.-++|||||++.|.++..
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~~ 28 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKILA 28 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHH
Confidence 489999999999999999988764
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=90.88 E-value=0.045 Score=49.90 Aligned_cols=25 Identities=32% Similarity=0.662 Sum_probs=22.3
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-.+.++||+|+|||.|.+.|+..+-
T Consensus 54 ~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCcchHHHHHHHHHHHhc
Confidence 3678999999999999999999874
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.66 E-value=0.051 Score=48.86 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=26.5
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
=+.+-+|+..+|+|++|+|||||+..|+.-.
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999987776553
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=90.59 E-value=0.07 Score=40.74 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=18.3
Q ss_pred CCCceEEEEEccCCCCcchhh
Q 018083 114 VPKTTSLLLIGPKGSGKSSLV 134 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl 134 (361)
+++|+.+.|..|.|||||..+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 578999999999999999654
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.42 E-value=0.055 Score=48.06 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCCcchhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
..+++|+|.-|.|||||++.+..-
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999988643
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.02 E-value=0.051 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEccCCCCcchhhhhhhhhhc
Q 018083 120 LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.|.||+|||||-|+++++.-..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~ 61 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAK 61 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 67999999999999999987665
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=89.71 E-value=0.097 Score=48.13 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-+|+|=|+-||||||+++.|...+.
T Consensus 6 lrI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 6 LRIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999998776
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=89.18 E-value=0.077 Score=45.60 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=27.7
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++--++.|.||.++|||+|+.+|+.++.
T Consensus 49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 468888999999999999999999999986
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.12 E-value=0.068 Score=47.77 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-+.||||.|+|||+++.-++..+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 578999999999999999998775
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=89.11 E-value=0.097 Score=48.14 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.9
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|.|=|+-||||||+++.|..-+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 578899999999999999999876
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.28 E-value=0.088 Score=44.87 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-+.||||.|.|||+++.-|+..+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHHH
Confidence 578999999999999999998775
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=88.13 E-value=0.1 Score=46.19 Aligned_cols=28 Identities=39% Similarity=0.610 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.+-.++|+|-..+|||||+|+|.|--.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEEecCccchhhhhhhhhccce
Confidence 3455699999999999999999998554
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.91 E-value=0.084 Score=45.25 Aligned_cols=20 Identities=45% Similarity=0.732 Sum_probs=18.2
Q ss_pred EEEEEccCCCCcchhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~ 138 (361)
-++++|..++|||||+..|.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 48999999999999999884
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=87.86 E-value=0.098 Score=45.14 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.3
Q ss_pred EEEEccCCCCcchhhhhhhh
Q 018083 120 LLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~g 139 (361)
++++|...+|||||+..|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 79999999999999999954
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=87.64 E-value=0.15 Score=39.53 Aligned_cols=21 Identities=38% Similarity=0.412 Sum_probs=16.7
Q ss_pred CceEEEEEccCCCCcchhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNR 136 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~ 136 (361)
..+...|.+|.|||||+++-.
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~ 27 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPA 27 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHH
Confidence 346678899999999987643
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=87.57 E-value=0.12 Score=45.86 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=27.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..++--++.|.||-++|||||+++|..++.
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg 129 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 567778999999999999999999999985
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=87.40 E-value=0.14 Score=44.77 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=21.1
Q ss_pred CCCceEEEEEccCCCCcchh--hhhhhhhh
Q 018083 114 VPKTTSLLLIGPKGSGKSSL--VNRISKVF 141 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTL--l~~I~gl~ 141 (361)
+.+|+.+.|.+|.|||||+. ..++....
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~ 35 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI 35 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999973 34444333
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=87.30 E-value=0.094 Score=48.21 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.-.|+|=|+-||||||+++.|...+.
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ceEEEEECCcCCCHHHHHHHHHHHhC
Confidence 34588999999999999999987665
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.92 E-value=0.097 Score=47.15 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=24.9
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
=+.|-+|+.++|+|+.|+|||+|+.-+..
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred ccCccCCCEEEeecCCCCChHHHHHHHHH
Confidence 46899999999999999999999765543
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=86.69 E-value=0.12 Score=46.26 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=25.9
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
=+.|-+|+.++|+|++|+|||+|+..+....
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~ 91 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQ 91 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred cccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence 3588999999999999999999987654433
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=85.89 E-value=0.18 Score=44.50 Aligned_cols=24 Identities=38% Similarity=0.672 Sum_probs=17.5
Q ss_pred EEEEEccCCCCcch-hhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSS-LVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKST-Ll~~I~gl~~ 142 (361)
.+.|.|+-|||||| |+..++.++.
T Consensus 26 ~~lV~g~aGSGKTt~l~~ri~~ll~ 50 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVLTHRIAYLMA 50 (318)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEecCCccHHHHHHHHHHHHHH
Confidence 47789999999996 4555555554
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.15 E-value=0.15 Score=44.48 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.2
Q ss_pred EEEEEccCCCCcchhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~ 138 (361)
-++|+|..++|||||+..|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999998885
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=84.61 E-value=0.16 Score=46.24 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.2
Q ss_pred CCceEEEEEccCCCCcchhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVN 135 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~ 135 (361)
+.|++.++.|.||+|||||-.
T Consensus 12 ~~~~~alfFGLSGTGKTTLs~ 32 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLST 32 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHHC
T ss_pred CCCCEEEEEccCCCCccccee
Confidence 468899999999999999763
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=84.25 E-value=0.17 Score=46.22 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.0
Q ss_pred CCceEEEEEccCCCCcchhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVN 135 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~ 135 (361)
+.|++.++.|.||+|||||--
T Consensus 12 ~~~~valffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 12 KEGDVAVFFGLSGTGKTTLST 32 (318)
T ss_dssp TTCCEEEEEECTTSCHHHHTC
T ss_pred CCCCEEEEEccCCCCcccccc
Confidence 357889999999999999764
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.07 E-value=0.2 Score=39.44 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=23.2
Q ss_pred CCceEEEEEccCCCCcchhhhhhh-hhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRIS-KVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~-gl~~ 142 (361)
++|=++.+.|-+|||||||.++|. .++.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q 32 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 32 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 467788999999999999999994 4544
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.28 E-value=0.15 Score=44.51 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=17.4
Q ss_pred EEEEccCCCCcchhhhhh
Q 018083 120 LLLIGPKGSGKSSLVNRI 137 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I 137 (361)
++|+|..++|||||+..|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHH
Confidence 899999999999999998
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=83.06 E-value=0.16 Score=44.18 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=18.2
Q ss_pred EEEEEccCCCCcch-hhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSS-LVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKST-Ll~~I~gl~~ 142 (361)
-+.|+|+-|||||| |+..+..++.
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~~ll~ 40 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIAHLIR 40 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHHHHHHH
Confidence 46799999999996 4566666654
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=82.84 E-value=0.28 Score=39.09 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCCcch-hhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSS-LVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKST-Ll~~I~gl~~ 142 (361)
|.+..|+||=.||||| |++.+.....
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~~~ 28 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRLEY 28 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHHHH
Confidence 6788999999999999 7777665543
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=81.76 E-value=0.24 Score=45.17 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.2
Q ss_pred CCceEEEEEccCCCCcchhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVN 135 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~ 135 (361)
+.|++.++.|-||+|||||--
T Consensus 12 ~~gd~alfFGLSGTGKTTLs~ 32 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLSA 32 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHHC
T ss_pred CCCCEEEEEccCCCCccccee
Confidence 367888999999999999873
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.44 E-value=0.2 Score=46.14 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=18.1
Q ss_pred EEEEccCCCCcchhhhhhh
Q 018083 120 LLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~ 138 (361)
++|+|..|+|||||+.+|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 9999999999999999984
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.84 E-value=0.28 Score=41.68 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=16.8
Q ss_pred CceEEEEEccCCCCcchhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNR 136 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~ 136 (361)
.|+-+.|+.|.|||||+..-+
T Consensus 57 ~g~~~~i~apTGsGKT~~~~~ 77 (237)
T d1gkub1 57 RKESFAATAPTGVGKTSFGLA 77 (237)
T ss_dssp TTCCEECCCCBTSCSHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHH
Confidence 467788999999999976543
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=80.83 E-value=0.27 Score=42.79 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..-+.|.||.|+||+++.++|-..-.
T Consensus 23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~ 48 (247)
T d1ny5a2 23 ECPVLITGESGVGKEVVARLIHKLSD 48 (247)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 34588999999999999999976544
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=80.19 E-value=0.24 Score=46.30 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=19.5
Q ss_pred EEEEccCCCCcchhhhhhhhhhc
Q 018083 120 LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..||||+|+|||+++.-|+.-+.
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i~ 68 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRIV 68 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999998776543
|