Citrus Sinensis ID: 018090

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
MALKANPVWGCAKTPHFHKGLPDLVPNRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLLPTLVYGQIAEPLSIMELSSSPDDGTKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAK
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccccHHHHHccccHHHHHHHcccHHHHHHcccccccccccEEEEEcccccHHHHHHHHHcccccEEccccHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHccccEEEEEEEEEEEEEEEcccccccccccEEEccHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHcccccEEEEccHHHHHHHccHHHHcccccccccccEEEEEEccccccccccccEEEEEEEEcccccHHHHHHHHHHHccccEEccccccccccccEEEEcccccccc
cccccccEEEcccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHcccHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHccccccccHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHcccEEEEEEEEEEEEEEEEEcccccHHHHHHHccccHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHccccccEEEccHHHHHHHcHHHHHHHccccccccEEEEEEEcccccccccccccEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccccEEEEEcccccccc
malkanpvwgcaktphfhkglpdlvpnrcgfgldlrvlnkWECTCVGVLAqthraitpveddrpytpdvqsseanersqdsqssgfhkdlnllptlvygqiaeplsimelssspddgtKVRVAYqglpgayseaaarkaypkcetvpcdQFEAAFKAVELWLVDkavlpiensvggsihrNYDLLLRHRLHIVGEVQLVVNHCllglpgvlKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILaekiqddddNVTRFLILArepiiagtdrpyktSIVFTLEEGPGMLFKALAVFALRDinltkiesrpqrkrplrvvddsnkgsak
malkanpvwgcAKTPHFHKGLPDLVPNRCGFGLDLRVLNKWECTCVGVLAQthraitpveddrpyTPDVQSSeanersqdsqssgfhKDLNLLPTLVYGQIAEPLSIMELSSSPDDGTKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLpiensvggsIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILarepiiagtdrpyKTSIVFTLEEGPGMLFKALAVFALRDINltkiesrpqrkrplrvvddsnkgsak
MALKANPVWGCAKTPHFHKGLPDLVPNRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLLPTLVYGQIAEPLSIMELSSSPDDGTKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAK
******PVWGCAKTPHFHKGLPDLVPNRCGFGLDLRVLNKWECTCVGVLAQTHRAIT*******************************DLNLLPTLVYGQIAEPLSIM***********VRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKI**********************
***KANPVWGCAKT*************RCGFGLDLRVLNKWECTCVGVL**********************************SGFHKD********************************VAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVD*SNK****
MALKANPVWGCAKTPHFHKGLPDLVPNRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDDR**********************FHKDLNLLPTLVYGQIAEPLSIMELSSSPDDGTKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESR*******************
**LKANPVWGCAKTPHFHKGLPDLVPNRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLLPTLVYGQIAEPLSIMELSSSPDDGTKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSN*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
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MALKANPVWGCAKTPHFHKGLPDLVPNRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLLPTLVYGQIAEPLSIMELSSSPDDGTKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query361 2.2.26 [Sep-21-2011]
Q9SA96392 Arogenate dehydratase/pre yes no 0.955 0.880 0.636 1e-124
Q9SGD6413 Arogenate dehydratase/pre no no 0.717 0.627 0.693 1e-100
Q9ZUY3424 Arogenate dehydratase 3, no no 0.756 0.643 0.657 3e-98
Q9SSE7381 Arogenate dehydratase/pre no no 0.692 0.656 0.704 2e-95
O22241424 Arogenate dehydratase 4, no no 0.720 0.613 0.640 9e-89
Q9FNJ8425 Arogenate dehydratase 5, no no 0.756 0.642 0.612 2e-84
P43900385 P-protein OS=Haemophilus yes no 0.634 0.594 0.333 6e-34
Q58054272 Prephenate dehydratase OS yes no 0.612 0.812 0.387 5e-33
O67085362 P-protein OS=Aquifex aeol yes no 0.620 0.618 0.387 2e-32
P27603365 P-protein OS=Pseudomonas no no 0.650 0.643 0.35 1e-30
>sp|Q9SA96|AROD1_ARATH Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  446 bits (1146), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/363 (63%), Positives = 277/363 (76%), Gaps = 18/363 (4%)

Query: 1   MALKANPVWGCAKTPHFHKGLPDLVPNRCGFGLD-LRVLNKWECTCVGVLAQTHRAITPV 59
           MAL+  P+W C +T H    L  L      F  D  R    WEC+     + + RA+T +
Sbjct: 1   MALRCFPIWVCPQTTHHRSPLMGLAE----FDADKRRRFCLWECSS----SASQRAVTAI 52

Query: 60  EDDRPYTPDVQ-SSEANERSQDSQSSGFHKDLNLLPTLVYGQIAEPLSIMELSSSPDDGT 118
           E + P++ +++ SS+    +Q++QS  FH+DL++LP        +PL+   L SS  D +
Sbjct: 53  EGEIPFSRELKKSSDELGLTQETQSLSFHRDLSMLP--------KPLTANSLYSSDGDDS 104

Query: 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSI 178
           KVR+++QG+PGAYSE AA KA+P CETVPC+QFEAAF+AVELWLVDKAVLPIENSVGGSI
Sbjct: 105 KVRISFQGIPGAYSETAALKAFPNCETVPCEQFEAAFQAVELWLVDKAVLPIENSVGGSI 164

Query: 179 HRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIV 238
           HRNYDLLLRHRLHIV EV L VNHCLLG+PGV KE++K V SHPQAL QC  +L+NLGI 
Sbjct: 165 HRNYDLLLRHRLHIVQEVHLPVNHCLLGVPGVKKEDIKCVLSHPQALDQCVNSLNNLGIQ 224

Query: 239 RISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREP 298
           RISA DTA AAQ V+S G+ D GA+AS +AA IYGLDILAE IQDD +NVTRFLILAREP
Sbjct: 225 RISAKDTATAAQTVSSSGKIDVGAIASVRAANIYGLDILAENIQDDVNNVTRFLILAREP 284

Query: 299 IIAGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKG 358
           +I  TDRPYKTSIVF+LEEGPG+LFKALAVFALR INL+KIESRPQR+RPLRVVD SN G
Sbjct: 285 MIPRTDRPYKTSIVFSLEEGPGVLFKALAVFALRSINLSKIESRPQRRRPLRVVDGSNNG 344

Query: 359 SAK 361
           SAK
Sbjct: 345 SAK 347
Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 9EC: 1
>sp|Q9SGD6|AROD6_ARATH Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZUY3|AROD3_ARATH Arogenate dehydratase 3, chloroplastic OS=Arabidopsis thaliana GN=ADT3 PE=1 SV=1 Back     alignment and function description
>sp|Q9SSE7|AROD2_ARATH Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1 Back     alignment and function description
>sp|O22241|AROD4_ARATH Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana GN=ADT4 PE=1 SV=1 Back     alignment and function description
>sp|Q9FNJ8|AROD5_ARATH Arogenate dehydratase 5, chloroplastic OS=Arabidopsis thaliana GN=ADT5 PE=1 SV=1 Back     alignment and function description
>sp|P43900|PHEA_HAEIN P-protein OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pheA PE=4 SV=1 Back     alignment and function description
>sp|Q58054|PHEA_METJA Prephenate dehydratase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pheA PE=1 SV=1 Back     alignment and function description
>sp|O67085|PHEA_AQUAE P-protein OS=Aquifex aeolicus (strain VF5) GN=pheA PE=4 SV=1 Back     alignment and function description
>sp|P27603|PHEA_PSEST P-protein OS=Pseudomonas stutzeri GN=pheA PE=4 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
224113661400 arogenate/prephenate dehydratase [Populu 0.972 0.877 0.761 1e-155
255554867403 prephenate dehydratase, putative [Ricinu 0.972 0.870 0.736 1e-148
224078592397 arogenate/prephenate dehydratase [Populu 0.966 0.879 0.732 1e-148
302144131396 unnamed protein product [Vitis vinifera] 0.966 0.881 0.695 1e-138
359483430 575 PREDICTED: arogenate dehydratase/prephen 0.947 0.594 0.698 1e-137
356563073399 PREDICTED: arogenate dehydratase/prephen 0.969 0.877 0.691 1e-130
357480317393 Arogenate dehydratase/prephenate dehydra 0.930 0.854 0.661 1e-126
449479475396 PREDICTED: arogenate dehydratase/prephen 0.950 0.866 0.668 1e-125
388496604393 unknown [Medicago truncatula] 0.930 0.854 0.658 1e-125
449434380396 PREDICTED: LOW QUALITY PROTEIN: arogenat 0.955 0.871 0.663 1e-124
>gi|224113661|ref|XP_002316535.1| arogenate/prephenate dehydratase [Populus trichocarpa] gi|222859600|gb|EEE97147.1| arogenate/prephenate dehydratase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 278/365 (76%), Positives = 310/365 (84%), Gaps = 14/365 (3%)

Query: 1   MALKA-NPVWGCAKTPHFHKGLPDLVPNRCG---FGLDLRVLNKWECTCVGVLAQTHRAI 56
           MAL+A +P+W     PH   G+ DL   RC       DL  L KWEC C+ VLAQ  RAI
Sbjct: 1   MALRAASPIWISPLRPHSKVGVSDLGLRRCADLRCYWDLERLPKWECCCLSVLAQ--RAI 58

Query: 57  TPVEDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLLPTLVYGQIAEPLSIMELSSSPDD 116
           TPVED++P  P V +S A ++ QD+QS GFHKDLNLLP        +PLS  +LSSSP +
Sbjct: 59  TPVEDEKPSAPQVDTSRATDQVQDTQSRGFHKDLNLLP--------KPLSAADLSSSPGN 110

Query: 117 GTKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGG 176
           G +VRVAYQG+PGAYSEAAA KAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGG
Sbjct: 111 GAQVRVAYQGIPGAYSEAAALKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGG 170

Query: 177 SIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLG 236
           SIHRNYDLLLRHRLHIVGEVQ+VVNHCLLGLPGV KEELKRV SHPQALAQCEMTL+ LG
Sbjct: 171 SIHRNYDLLLRHRLHIVGEVQMVVNHCLLGLPGVPKEELKRVLSHPQALAQCEMTLTKLG 230

Query: 237 IVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAR 296
           I+R+SADD+AGAAQMV + GERDTGA+ASA+AA+IYGL+IL EKIQDDDDN+TRFLILAR
Sbjct: 231 IIRVSADDSAGAAQMVVANGERDTGAIASARAADIYGLNILLEKIQDDDDNITRFLILAR 290

Query: 297 EPIIAGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSN 356
           EP+I G++RP+KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSN
Sbjct: 291 EPMIPGSNRPHKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSN 350

Query: 357 KGSAK 361
           KGSA+
Sbjct: 351 KGSAR 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255554867|ref|XP_002518471.1| prephenate dehydratase, putative [Ricinus communis] gi|223542316|gb|EEF43858.1| prephenate dehydratase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224078592|ref|XP_002305566.1| arogenate/prephenate dehydratase [Populus trichocarpa] gi|222848530|gb|EEE86077.1| arogenate/prephenate dehydratase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302144131|emb|CBI23236.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359483430|ref|XP_002268124.2| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356563073|ref|XP_003549790.1| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|357480317|ref|XP_003610444.1| Arogenate dehydratase/prephenate dehydratase [Medicago truncatula] gi|355511499|gb|AES92641.1| Arogenate dehydratase/prephenate dehydratase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449479475|ref|XP_004155609.1| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388496604|gb|AFK36368.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449434380|ref|XP_004134974.1| PREDICTED: LOW QUALITY PROTEIN: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
TAIR|locus:2027332392 ADT1 "arogenate dehydratase 1" 0.955 0.880 0.636 2.2e-112
TAIR|locus:2199963413 ADT6 "arogenate dehydratase 6" 0.883 0.772 0.582 2.3e-94
TAIR|locus:2042021424 PD1 "prephenate dehydratase 1" 0.756 0.643 0.657 3e-92
TAIR|locus:2091127381 ADT2 "arogenate dehydratase 2" 0.692 0.656 0.704 1.4e-89
TAIR|locus:2101630424 ADT4 "arogenate dehydratase 4" 0.720 0.613 0.640 2.1e-84
TAIR|locus:2162459425 ADT5 "arogenate dehydratase 5" 0.756 0.642 0.615 9.1e-84
TIGR_CMR|DET_0461358 DET_0461 "chorismate mutase/pr 0.620 0.625 0.427 5.2e-42
UNIPROTKB|Q0C4F5278 HNE_0659 "Prephenate dehydrata 0.609 0.791 0.426 4.2e-40
TIGR_CMR|SPO_3539284 SPO_3539 "prephenate dehydrata 0.609 0.774 0.417 8e-37
UNIPROTKB|Q9KU24391 VC_0705 "Chorismate mutase/pre 0.703 0.649 0.334 8.3e-35
TAIR|locus:2027332 ADT1 "arogenate dehydratase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 231/363 (63%), Positives = 277/363 (76%)

Query:     1 MALKANPVWGCAKTPHFHKGLPDLVPNRCGFGLDLRV-LNKWECTCVGVLAQTHRAITPV 59
             MAL+  P+W C +T H    L  L      F  D R     WEC+     + + RA+T +
Sbjct:     1 MALRCFPIWVCPQTTHHRSPLMGLAE----FDADKRRRFCLWECSS----SASQRAVTAI 52

Query:    60 EDDRPYTPDVQ-SSEANERSQDSQSSGFHKDLNLLPTLVYGQIAEPLSIMELSSSPDDGT 118
             E + P++ +++ SS+    +Q++QS  FH+DL++LP        +PL+   L SS  D +
Sbjct:    53 EGEIPFSRELKKSSDELGLTQETQSLSFHRDLSMLP--------KPLTANSLYSSDGDDS 104

Query:   119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSI 178
             KVR+++QG+PGAYSE AA KA+P CETVPC+QFEAAF+AVELWLVDKAVLPIENSVGGSI
Sbjct:   105 KVRISFQGIPGAYSETAALKAFPNCETVPCEQFEAAFQAVELWLVDKAVLPIENSVGGSI 164

Query:   179 HRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIV 238
             HRNYDLLLRHRLHIV EV L VNHCLLG+PGV KE++K V SHPQAL QC  +L+NLGI 
Sbjct:   165 HRNYDLLLRHRLHIVQEVHLPVNHCLLGVPGVKKEDIKCVLSHPQALDQCVNSLNNLGIQ 224

Query:   239 RISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREP 298
             RISA DTA AAQ V+S G+ D GA+AS +AA IYGLDILAE IQDD +NVTRFLILAREP
Sbjct:   225 RISAKDTATAAQTVSSSGKIDVGAIASVRAANIYGLDILAENIQDDVNNVTRFLILAREP 284

Query:   299 IIAGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKG 358
             +I  TDRPYKTSIVF+LEEGPG+LFKALAVFALR INL+KIESRPQR+RPLRVVD SN G
Sbjct:   285 MIPRTDRPYKTSIVFSLEEGPGVLFKALAVFALRSINLSKIESRPQRRRPLRVVDGSNNG 344

Query:   359 SAK 361
             SAK
Sbjct:   345 SAK 347
GO:0004664 "prephenate dehydratase activity" evidence=IEA;ISS
GO:0008152 "metabolic process" evidence=IEA
GO:0009094 "L-phenylalanine biosynthetic process" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016597 "amino acid binding" evidence=IEA
GO:0047769 "arogenate dehydratase activity" evidence=IDA
GO:0010048 "vernalization response" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0048440 "carpel development" evidence=RCA
TAIR|locus:2199963 ADT6 "arogenate dehydratase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042021 PD1 "prephenate dehydratase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091127 ADT2 "arogenate dehydratase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101630 ADT4 "arogenate dehydratase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162459 ADT5 "arogenate dehydratase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0461 DET_0461 "chorismate mutase/prephenate dehydratase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C4F5 HNE_0659 "Prephenate dehydratase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3539 SPO_3539 "prephenate dehydratase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KU24 VC_0705 "Chorismate mutase/prephenate dehydratase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SA96AROD1_ARATH4, ., 2, ., 1, ., 9, 10.63630.95560.8801yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.2.1.910.946
3rd Layer4.2.10.963
4th Layer4.2.1.510.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
PLN02317382 PLN02317, PLN02317, arogenate dehydratase 0.0
COG0077279 COG0077, PheA, Prephenate dehydratase [Amino acid 3e-94
PRK11899279 PRK11899, PRK11899, prephenate dehydratase; Provis 6e-84
pfam00800181 pfam00800, PDT, Prephenate dehydratase 1e-81
PRK11898283 PRK11898, PRK11898, prephenate dehydratase; Provis 7e-76
PRK10622386 PRK10622, pheA, bifunctional chorismate mutase/pre 6e-40
cd0490580 cd04905, ACT_CM-PDT, C-terminal ACT domain of the 9e-18
cd0488075 cd04880, ACT_AAAH-PDT-like, ACT domain of the nonh 8e-16
cd0490474 cd04904, ACT_AAAH, ACT domain of the nonheme iron- 1e-09
cd0493190 cd04931, ACT_PAH, ACT domain of the nonheme iron-d 5e-07
TIGR01268 436 TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydrox 4e-06
cd0492974 cd04929, ACT_TPH, ACT domain of the nonheme iron-d 2e-05
cd04930115 cd04930, ACT_TH, ACT domain of the nonheme iron-de 2e-04
cd0211660 cd02116, ACT, ACT domains are commonly involved in 6e-04
>gnl|CDD|215181 PLN02317, PLN02317, arogenate dehydratase Back     alignment and domain information 
 Score =  554 bits (1429), Expect = 0.0
 Identities = 230/321 (71%), Positives = 262/321 (81%), Gaps = 11/321 (3%)

Query: 41  WECTCVGVLAQTHRAITPVEDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLLPTLVYGQ 100
           W+ +C  +   + +  +P  D  P  P V+SS        +QS  FH+DL+ LP      
Sbjct: 27  WQSSCAIL---SSKVRSPEGDAPPSRPAVESSGGAGLVVATQSVSFHRDLSGLP------ 77

Query: 101 IAEPLSIMELSSSPDDGTKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVEL 160
              PLSI +LS SP  G+K+RVAYQG+PGAYSEAAARKAYP CE VPC+QFEAAF+AVEL
Sbjct: 78  --RPLSITDLSPSPMHGSKLRVAYQGVPGAYSEAAARKAYPNCEAVPCEQFEAAFQAVEL 135

Query: 161 WLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFS 220
           WL D+AVLPIENS+GGSIHRNYDLLLRHRLHIVGEVQL V+HCLL LPGV KEELKRV S
Sbjct: 136 WLADRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEELKRVIS 195

Query: 221 HPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEK 280
           HPQALAQCE TL+ LG+VR + DDTAGAA+MVA+ G RDT A+ASA+AAE+YGLDILAE 
Sbjct: 196 HPQALAQCENTLTKLGVVREAVDDTAGAAKMVAANGLRDTAAIASARAAELYGLDILAEG 255

Query: 281 IQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIE 340
           IQDD DNVTRFL+LAREPII  TDRP+KTSIVF+LEEGPG+LFKALAVFALRDINLTKIE
Sbjct: 256 IQDDSDNVTRFLMLAREPIIPRTDRPFKTSIVFSLEEGPGVLFKALAVFALRDINLTKIE 315

Query: 341 SRPQRKRPLRVVDDSNKGSAK 361
           SRPQRKRPLRVVDDSN G+AK
Sbjct: 316 SRPQRKRPLRVVDDSNSGTAK 336

Length = 382
>gnl|CDD|223155 COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|237014 PRK11899, PRK11899, prephenate dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|216127 pfam00800, PDT, Prephenate dehydratase Back     alignment and domain information
>gnl|CDD|237013 PRK11898, PRK11898, prephenate dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|182594 PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|153177 cd04905, ACT_CM-PDT, C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>gnl|CDD|153152 cd04880, ACT_AAAH-PDT-like, ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>gnl|CDD|153176 cd04904, ACT_AAAH, ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>gnl|CDD|153203 cd04931, ACT_PAH, ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) Back     alignment and domain information
>gnl|CDD|130335 TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydroxylase, tetrameric form Back     alignment and domain information
>gnl|CDD|153201 cd04929, ACT_TPH, ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes Back     alignment and domain information
>gnl|CDD|153202 cd04930, ACT_TH, ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH) Back     alignment and domain information
>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 361
PLN02317382 arogenate dehydratase 100.0
COG0077279 PheA Prephenate dehydratase [Amino acid transport 100.0
PRK11899279 prephenate dehydratase; Provisional 100.0
KOG2797377 consensus Prephenate dehydratase [Amino acid trans 100.0
PRK10622386 pheA bifunctional chorismate mutase/prephenate deh 100.0
PRK11898283 prephenate dehydratase; Provisional 100.0
PF00800181 PDT: Prephenate dehydratase Caution this is only a 100.0
cd0490474 ACT_AAAH ACT domain of the nonheme iron-dependent, 99.51
cd0493190 ACT_PAH ACT domain of the nonheme iron-dependent a 99.48
cd04930115 ACT_TH ACT domain of the nonheme iron-dependent ar 99.42
PRK06034279 hypothetical protein; Provisional 99.42
cd0492974 ACT_TPH ACT domain of the nonheme iron-dependent a 99.4
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 99.17
TIGR01268 436 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra 99.03
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 98.98
TIGR01270 464 Trp_5_monoox tryptophan 5-monooxygenase, tetrameri 98.97
PRK08818370 prephenate dehydrogenase; Provisional 98.19
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 97.6
TIGR01269 457 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. 97.18
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 96.87
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 96.46
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 96.37
KOG3820 461 consensus Aromatic amino acid hydroxylase [Amino a 96.15
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 95.7
PRK0673776 acetolactate synthase 1 regulatory subunit; Valida 95.48
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 95.44
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 95.38
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 95.24
PRK1115276 ilvM acetolactate synthase 2 regulatory subunit; P 95.16
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 95.14
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 94.86
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 94.66
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 94.65
cd0490273 ACT_3PGDH-xct C-terminal ACT (regulatory) domain o 94.48
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 94.46
cd0211660 ACT ACT domains are commonly involved in specifica 94.24
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 93.73
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 93.6
cd0488568 ACT_ThrD-I Tandem C-terminal ACT domains of threon 93.51
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 93.32
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 93.24
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 93.14
PRK1356284 acetolactate synthase 1 regulatory subunit; Provis 93.07
cd0490169 ACT_3PGDH C-terminal ACT (regulatory) domain of D- 93.03
PRK11895 161 ilvH acetolactate synthase 3 regulatory subunit; R 92.95
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 92.63
PRK0817896 acetolactate synthase 1 regulatory subunit; Review 92.55
TIGR00119 157 acolac_sm acetolactate synthase, small subunit. ac 92.34
PRK08526403 threonine dehydratase; Provisional 92.28
PF1371063 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. 91.65
PF12974243 Phosphonate-bd: ABC transporter, phosphonate, peri 91.64
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 91.27
PRK0019490 hypothetical protein; Validated 91.27
cd0490685 ACT_ThrD-I_1 First of two tandem C-terminal ACT do 90.86
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 90.38
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 90.38
PRK08639420 threonine dehydratase; Validated 90.23
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 90.04
PRK04435147 hypothetical protein; Provisional 89.92
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 89.92
COG4747142 ACT domain-containing protein [General function pr 89.64
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 89.51
TIGR01127380 ilvA_1Cterm threonine dehydratase, medium form. A 89.29
TIGR01728288 SsuA_fam ABC transporter, substrate-binding protei 88.92
PRK06382406 threonine dehydratase; Provisional 88.11
PRK08577136 hypothetical protein; Provisional 88.06
PRK08198404 threonine dehydratase; Provisional 88.04
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 86.86
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 86.23
smart00079134 PBPe Eukaryotic homologues of bacterial periplasmi 86.02
cd08417200 PBP2_Nitroaromatics_like The C-terminal substrate 85.99
PRK06545359 prephenate dehydrogenase; Validated 84.66
cd08445203 PBP2_BenM_CatM_CatR The C-terminal substrate bindi 84.42
TIGR00363258 lipoprotein, YaeC family. This family of putative 84.3
COG4492150 PheB ACT domain-containing protein [General functi 84.15
PRK09959 1197 hybrid sensory histidine kinase in two-component r 84.0
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 83.95
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 83.69
cd08452197 PBP2_AlsR The C-terminal substrate binding domain 83.19
PRK15007243 putative ABC transporter arginine-biding protein; 83.11
COG2061 170 ACT-domain-containing protein, predicted allosteri 82.67
PF00497225 SBP_bac_3: Bacterial extracellular solute-binding 82.46
PRK07334403 threonine dehydratase; Provisional 82.16
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 81.8
TIGR01096250 3A0103s03R lysine-arginine-ornithine-binding perip 81.59
PLN02550 591 threonine dehydratase 81.08
PRK11151305 DNA-binding transcriptional regulator OxyR; Provis 81.05
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 80.99
PRK09224 504 threonine dehydratase; Reviewed 80.81
>PLN02317 arogenate dehydratase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-84  Score=647.50  Aligned_cols=322  Identities=72%  Similarity=1.085  Sum_probs=297.9

Q ss_pred             ccCCccccccccccchhhhhhhhccccccccccCCCCCCCcccchhhhhcccccccccccccCCcccccccccccccccc
Q 018090           28 RCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLLPTLVYGQIAEPLSI  107 (361)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~lp~~~~~~~~~~~~~  107 (361)
                      .+..+|.. +.+.|+|+|.. +.+  +...+..+..+..+.+..+++.......+...+++|...+|        +|++.
T Consensus        15 ~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~   82 (382)
T PLN02317         15 SFPARWAS-RRAAWQSSCAI-LSS--KVRSPEGDAPPSRPAVESSGGAGLVVATQSVSFHRDLSGLP--------RPLSI   82 (382)
T ss_pred             ccCCCccc-cchhhhhhcch-hhc--ccccccccccccccccccccccccccccccccccccccccc--------ccccH
Confidence            34444544 33567766654 445  56778888888889999999999999999999999998888        99999


Q ss_pred             cccCCCCCCCCccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhc
Q 018090          108 MELSSSPDDGTKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLR  187 (361)
Q Consensus       108 ~~~~~~~~~~~~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~  187 (361)
                      .+++..++.+.++|||||||+|||||+||+++|++.+++||++|++||++|++|++||||||||||++|+|++|||+|.+
T Consensus        83 ~~~~~~~~~~~~~rVaylGp~GtfSe~AA~~~f~~~e~vp~~sf~~vf~AVe~g~ad~gVvPIENS~~GsV~~t~DlL~~  162 (382)
T PLN02317         83 TDLSPSPMHGSKLRVAYQGVPGAYSEAAARKAYPNCEAVPCEQFEAAFQAVELWLADRAVLPIENSLGGSIHRNYDLLLR  162 (382)
T ss_pred             hhhcccccCCCCcEEEEECCCcCHHHHHHHHhhCcCceeecCCHHHHHHHHHCCCCCEEEEEEeccCccchHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEEEeeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHh
Q 018090          188 HRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQ  267 (361)
Q Consensus       188 ~~L~IvgEi~lpI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~  267 (361)
                      ++++|+||+++||+|||++++|+++++|++||||||||+||++||++++++++++.|||+||++|++.+.++.|||||+.
T Consensus       163 ~~l~IvgEv~l~I~h~Ll~~~g~~l~~Ik~VySHPQALaQC~~~L~~~~~~~~~~~sTA~AA~~Va~~~~~~~AAIaS~~  242 (382)
T PLN02317        163 HRLHIVGEVQLPVHHCLLALPGVRKEELKRVISHPQALAQCENTLTKLGVVREAVDDTAGAAKMVAANGLRDTAAIASAR  242 (382)
T ss_pred             CCCEEEEEEEEEeeeEEecCCCCCHHHCeEEEEehHHHHHHHHHHHHcCCeEEEcCCHHHHHHHHHhcCCCCceeecCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999987777899999999


Q ss_pred             hHHHcCCceeeccccCCCCCceEEEEEeeCCCCCCCCCCceEEEEEEecCCcchHHHHHHHHHHCCccccceeeecCCCC
Q 018090          268 AAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKR  347 (361)
Q Consensus       268 AA~~YgL~iLa~~IqD~~~N~TRFlvl~r~~~~~~~~~~~KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESRP~~~~  347 (361)
                      ||++|||+||+++|||+++|+|||+||+|++..+..++.+||||+|+++|+||+|+++|++|+.+|||||||||||.+++
T Consensus       243 aA~~YgL~iLa~~IqD~~~N~TRFlvl~r~~~~~~~~~~~KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~  322 (382)
T PLN02317        243 AAELYGLDILAEGIQDDSDNVTRFLMLAREPIIPRTDRPFKTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKR  322 (382)
T ss_pred             HHHHcCCcchhhhhcCCCCCeeeEEEEecCCcCCCCCCCccEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCC
Confidence            99999999999999999999999999999976555556679999999999999999999999999999999999999999


Q ss_pred             CCeeeecCCCCCCC
Q 018090          348 PLRVVDDSNKGSAK  361 (361)
Q Consensus       348 pw~y~~~~~~~~~~  361 (361)
                      |-+.+||+|+|++|
T Consensus       323 ~~~~~~~~~~~~~~  336 (382)
T PLN02317        323 PLRVVDDSNSGTAK  336 (382)
T ss_pred             Cccccccccccccc
Confidence            99999999999875

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11899 prephenate dehydratase; Provisional Back     alignment and domain information
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional Back     alignment and domain information
>PRK11898 prephenate dehydratase; Provisional Back     alignment and domain information
>PF00800 PDT: Prephenate dehydratase Caution this is only a partial structure Back     alignment and domain information
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) Back     alignment and domain information
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH) Back     alignment and domain information
>PRK06034 hypothetical protein; Provisional Back     alignment and domain information
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric Back     alignment and domain information
>PRK08818 prephenate dehydrogenase; Provisional Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism] Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional Back     alignment and domain information
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria Back     alignment and domain information
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed Back     alignment and domain information
>TIGR00119 acolac_sm acetolactate synthase, small subunit Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B Back     alignment and domain information
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>COG4747 ACT domain-containing protein [General function prediction only] Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
>cd08417 PBP2_Nitroaromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK06545 prephenate dehydrogenase; Validated Back     alignment and domain information
>cd08445 PBP2_BenM_CatM_CatR The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold Back     alignment and domain information
>TIGR00363 lipoprotein, YaeC family Back     alignment and domain information
>COG4492 PheB ACT domain-containing protein [General function prediction only] Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>cd08452 PBP2_AlsR The C-terminal substrate binding domain of LysR-type trnascriptional regulator AlsR, which regulates acetoin formation under stationary phase growth conditions; contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK15007 putative ABC transporter arginine-biding protein; Provisional Back     alignment and domain information
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>PLN02550 threonine dehydratase Back     alignment and domain information
>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>PRK09224 threonine dehydratase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
2qmx_B283 The Crystal Structure Of L-Phe Inhibited Prephenate 3e-53
3mwb_A313 The Crystal Structure Of Prephenate Dehydratase In 6e-22
2qmw_A267 The Crystal Structure Of The Prephenate Dehydratase 1e-15
3luy_A329 Putative Chorismate Mutase From Bifidobacterium Ado 2e-04
1phz_A 429 Structure Of Phosphorylated Phenylalanine Hydroxyla 8e-04
>pdb|2QMX|B Chain B, The Crystal Structure Of L-Phe Inhibited Prephenate Dehydratase From Chlorobium Tepidum Tls Length = 283 Back     alignment and structure 
Iteration: 1

 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 120/243 (49%), Positives = 152/243 (62%), Gaps = 11/243 (4%)
Query: 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGS 177
           T   +AYQG PGAYSE AA +     E +PC+ F+  F AV     D AV+PIENS+GGS
Sbjct: 5   TNWLIAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSLGGS 61
Query: 178 IHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGI 237
           IH+NYDLLLR  + I+ E  + V HCLLGLPG   E   +  SHPQAL QC    +    
Sbjct: 62  IHQNYDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAXSHPQALVQCHNFFATHPQ 121
Query: 238 VRI-SADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAR 296
           +R  +A DTAG+A+ VA   ++   A+AS +A E+YGLDIL E + D++ N+TRF  +A 
Sbjct: 122 IRAEAAYDTAGSAKXVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFCIAH 181
Query: 297 E--PIIAGTD-RP----YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPL 349
           E  P I+    RP     KTSIVF L    G LF+ALA FALR I+LTKIESRP RK+  
Sbjct: 182 ENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAF 241
Query: 350 RVV 352
             +
Sbjct: 242 EYL 244
>pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex With L-Phe From Arthrobacter Aurescens To 2.0a Length = 313 Back     alignment and structure
>pdb|2QMW|A Chain A, The Crystal Structure Of The Prephenate Dehydratase (Pdt) From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 267 Back     alignment and structure
>pdb|3LUY|A Chain A, Putative Chorismate Mutase From Bifidobacterium Adolescentis Length = 329 Back     alignment and structure
>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase Length = 429 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
2qmx_A283 Prephenate dehydratase; APC86053, L-Phe inhibition 1e-125
2qmw_A267 PDT, prephenate dehydratase; APC85812, prephenate 1e-111
3mwb_A313 Prephenate dehydratase; L-Phe, PSI, MCSG, structur 1e-110
3luy_A329 Probable chorismate mutase; structural genomics, A 1e-103
1phz_A 429 Protein (phenylalanine hydroxylase); aromatic amin 2e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls} Length = 283 Back     alignment and structure
 Score =  359 bits (925), Expect = e-125
 Identities = 117/239 (48%), Positives = 148/239 (61%), Gaps = 11/239 (4%)

Query: 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGS 177
           T   +AYQG PGAYSE AA +     E +PC+ F+  F AV     D AV+PIENS+GGS
Sbjct: 5   TNWLIAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSLGGS 61

Query: 178 IHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLS-NLG 236
           IH+NYDLLLR  + I+ E  + V HCLLGLPG   E   +  SHPQAL QC    + +  
Sbjct: 62  IHQNYDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATHPQ 121

Query: 237 IVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAR 296
           I   +A DTAG+A+MVA   ++   A+AS +A E+YGLDIL E + D++ N+TRF  +A 
Sbjct: 122 IRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFCIAH 181

Query: 297 EPIIAGTDRP-------YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRP 348
           E     +           KTSIVF L    G LF+ALA FALR I+LTKIESRP RK+ 
Sbjct: 182 ENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKA 240
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3 Length = 267 Back     alignment and structure
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens} Length = 313 Back     alignment and structure
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis} Length = 329 Back     alignment and structure
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A Length = 429 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
2qmx_A283 Prephenate dehydratase; APC86053, L-Phe inhibition 100.0
2qmw_A267 PDT, prephenate dehydratase; APC85812, prephenate 100.0
3mwb_A313 Prephenate dehydratase; L-Phe, PSI, MCSG, structur 100.0
3luy_A329 Probable chorismate mutase; structural genomics, A 100.0
1phz_A 429 Protein (phenylalanine hydroxylase); aromatic amin 99.31
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 95.65
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 95.31
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 94.39
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 94.23
1xt8_A292 Putative amino-acid transporter periplasmic solut 94.21
3k4u_A245 Binding component of ABC transporter; structural g 94.18
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 94.17
3kzg_A237 Arginine 3RD transport system periplasmic binding 94.13
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 93.85
2f1f_A 164 Acetolactate synthase isozyme III small subunit; f 93.7
2pc6_A 165 Probable acetolactate synthase isozyme III (small; 93.17
3del_B242 Arginine binding protein; alpha and beta protein ( 92.91
2fgc_A 193 Acetolactate synthase, small subunit; regulatory s 92.4
2f06_A144 Conserved hypothetical protein; structural genomic 92.04
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 91.89
3qax_A268 Probable ABC transporter arginine-binding protein; 91.85
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 91.43
2qpq_A301 Protein BUG27; alpha/beta domain, venus flytrap, t 90.59
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 90.57
2pfz_A301 Putative exported protein; extracytoplasmic solute 90.26
2vha_A287 Periplasmic binding transport protein; periplasmic 90.08
2f5x_A312 BUGD; periplasmic binding protein, transport prote 89.65
3tql_A227 Arginine-binding protein; transport and binding pr 89.62
2f06_A144 Conserved hypothetical protein; structural genomic 89.61
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 89.39
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 88.99
3un6_A341 Hypothetical protein saouhsc_00137; structural gen 88.65
2pfy_A301 Putative exported protein; extracytoplasmic solute 88.56
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 88.48
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 88.29
4h5g_A243 Amino acid ABC superfamily ATP binding cassette tr 88.24
1u8s_A192 Glycine cleavage system transcriptional repressor, 86.68
3hv1_A268 Polar amino acid ABC uptake transporter substrate 86.44
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 86.35
2yln_A283 Putative ABC transporter, periplasmic binding Pro 86.26
2dvz_A314 BUGE, putative exported protein; periplamsic bindi 86.23
2hpg_A327 ABC transporter, periplasmic substrate-binding pro 85.69
3ksx_A324 Nitrate transport protein; SSUA, alkanesulfonate-b 85.48
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 85.42
2vpn_A316 Periplasmic substrate binding protein; ectoine, hy 84.72
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 84.08
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 82.96
2q88_A257 EHUB, putative ABC transporter amino acid-binding 81.79
2nwr_A267 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD 81.61
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls} Back     alignment and structure
Probab=100.00  E-value=1.9e-79  Score=589.91  Aligned_cols=230  Identities=50%  Similarity=0.751  Sum_probs=219.8

Q ss_pred             ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEE
Q 018090          119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQL  198 (361)
Q Consensus       119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~l  198 (361)
                      +++||||||+|||||+||+++|   +++||+||++||++|++|++||||||||||++|+|.+|||+|.+++++|+||+.+
T Consensus         6 ~~~iaylGp~Gtfs~~Aa~~~f---~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~l   82 (283)
T 2qmx_A            6 NWLIAYQGEPGAYSEIAALRFG---EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVVILAETFV   82 (283)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHS---EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEEEEEEEEE
T ss_pred             CcEEEEECCCCCHHHHHHHHHh---HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhcCCcEEEEEEEE
Confidence            4689999999999999999999   8999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHhc-CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCcee
Q 018090          199 VVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNL-GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDIL  277 (361)
Q Consensus       199 pI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~~-~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iL  277 (361)
                      ||+|||++++|.++++|++||||||||+||++||+++ +++.+++.|||+||++|+++++++.|||||+.||++|||+||
T Consensus        83 ~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~~p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~AA~~ygL~il  162 (283)
T 2qmx_A           83 KVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATHPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDIL  162 (283)
T ss_dssp             ECCCEEEECSSCCTTTCCEEEECHHHHHHTHHHHHHCTTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHHHHHTTCEEE
T ss_pred             eeeeeEecCCCCChhhCCEEEEeHHHHHHHHHHHHHCCCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHHHHHcCCcee
Confidence            9999999999999999999999999999999999998 799999999999999999987788999999999999999999


Q ss_pred             eccccCCCCCceEEEEEeeCCCC--------CCCCCCceEEEEEEecCCcchHHHHHHHHHHCCccccceeeecCCCCCC
Q 018090          278 AEKIQDDDDNVTRFLILAREPII--------AGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPL  349 (361)
Q Consensus       278 a~~IqD~~~N~TRFlvl~r~~~~--------~~~~~~~KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESRP~~~~pw  349 (361)
                      +++|||+++|+|||+||++++..        +. .+.+||||+|+++|+||+|+++|++|+++|||||||||||+++++|
T Consensus       163 ~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~-~~~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~  241 (283)
T 2qmx_A          163 KENLADEEWNITRFFCIAHENNPDISHLKVRPD-VARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAF  241 (283)
T ss_dssp             ESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCE-EEEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTT
T ss_pred             cccCcCCCCCeeeEEEEecCccccccccccCCC-CCCceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCc
Confidence            99999999999999999998643        21 2258999999999999999999999999999999999999999999


Q ss_pred             eee
Q 018090          350 RVV  352 (361)
Q Consensus       350 ~y~  352 (361)
                      +|+
T Consensus       242 ~Y~  244 (283)
T 2qmx_A          242 EYL  244 (283)
T ss_dssp             EEE
T ss_pred             ceE
Confidence            984
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3 Back     alignment and structure
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens} Back     alignment and structure
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis} Back     alignment and structure
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Back     alignment and structure
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis} Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 Back     alignment and structure
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I} Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp} Back     alignment and structure
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I} Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis} Back     alignment and structure
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima} Back     alignment and structure
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 361
d2qmwa1184 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphyl 2e-49
d1phza197 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-t 4e-14
d2qmwa280 d.58.18.3 (A:185-264) Prephenate dehydratase C-ter 1e-10
>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus aureus [TaxId: 1280]} Length = 184 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Prephenate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

 Score =  162 bits (410), Expect = 2e-49
 Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 6/182 (3%)

Query: 121 RVAYQGLPGAYSEAAARKAYPKCET--VPCDQFEAAFKAVELWLVDKAVLPIENSVGGSI 178
           ++ Y G  G +S  A R+ + + E    P        KAV        V+PIENS+ G+I
Sbjct: 2   QLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTI 61

Query: 179 HRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIV 238
           +   D L +  +   GE++L +N  L G       ++K+V+S   A++Q    +      
Sbjct: 62  NIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFD 121

Query: 239 RISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREP 298
               D T  +   +    E    A+A   + E YG   +   I+D   NVTRFL++  + 
Sbjct: 122 YDYVDSTIQSLTKI----ENGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQ 177

Query: 299 II 300
             
Sbjct: 178 QF 179
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 Back     information, alignment and structure
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 80 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
d2qmwa1184 Prephenate dehydratase {Staphylococcus aureus [Tax 100.0
d1phza197 Phenylalanine hydroxylase N-terminal domain {Rat ( 99.61
d2qmwa280 Prephenate dehydratase C-terminal domain {Staphylo 99.48
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 96.26
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 95.8
d2f1fa176 Acetolactate synthase small subunit, IlvH {Escheri 95.44
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 95.04
d2fgca278 Acetolactate synthase small subunit, IlvH {Thermot 94.96
d2pc6a277 Acetolactate synthase small subunit, IlvH {Nitroso 94.68
d1ygya378 Phosphoglycerate dehydrogenase, regulatory (C-term 94.21
d1xt8a1248 Putative amino-acid transporter CjaA {Campylobacte 94.14
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 93.35
d1sc6a384 Phosphoglycerate dehydrogenase, regulatory (C-term 92.4
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 90.51
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 90.3
d1xs5a_240 Putative lipoprotein (NlpA family) {Treponema pall 86.57
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 82.54
d1ii5a_226 Glutamate receptor ligand binding core {Synechocys 81.75
>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Prephenate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.9e-60  Score=430.30  Aligned_cols=177  Identities=26%  Similarity=0.355  Sum_probs=169.0

Q ss_pred             cEEEEeCCCCcHHHHHHHHHCCC--CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEE
Q 018090          120 VRVAYQGLPGAYSEAAARKAYPK--CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQ  197 (361)
Q Consensus       120 ~rIAyLGP~GTySe~AA~~~f~~--~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~  197 (361)
                      |||+||||+|||||+||+++|++  .+++||.||++||++|++|++||||||||||++|+|.+|||+|.+++++|+||+.
T Consensus         1 mki~yLGp~GtfS~~Aa~~~f~~~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~D~L~~~~~~I~~E~~   80 (184)
T d2qmwa1           1 MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFAHGEIR   80 (184)
T ss_dssp             CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEEEEEEE
T ss_pred             CEEEEeCCCChHHHHHHHHhcccCCceeeecCCHHHHHHHHHcCCCceeEEEeecccccchHHHHHhhhccCceeEeeec
Confidence            68999999999999999999985  5789999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCcee
Q 018090          198 LVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDIL  277 (361)
Q Consensus       198 lpI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iL  277 (361)
                      +||+|||+++++.++++|++|||||||++||++||+++.++.+.++||++||+.+.    ++.|||+|+.||++|||+||
T Consensus        81 l~I~h~Ll~~~~~~l~~I~~V~SHpqal~QC~~~l~~~~~~~~~~~sta~aa~~~~----~~~aAIas~~aa~~ygL~il  156 (184)
T d2qmwa1          81 LDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVDSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPI  156 (184)
T ss_dssp             EECCEEEECCSSCCSTTCCEEEECHHHHHHSHHHHHHTTCEEEECSSHHHHHHTCB----TTEEEEEETTTSGGGTCCEE
T ss_pred             ccchhhhcccccccccccceEEEecchHHHHHHHHHhhccchhhhhhHHHHHhhhh----hhhhccccHhHHHHcCChhh
Confidence            99999999999999999999999999999999999998888999999999998753    46899999999999999999


Q ss_pred             eccccCCCCCceEEEEEeeCCCC
Q 018090          278 AEKIQDDDDNVTRFLILAREPII  300 (361)
Q Consensus       278 a~~IqD~~~N~TRFlvl~r~~~~  300 (361)
                      +++|||+++|+|||+||+|++..
T Consensus       157 ~~~I~D~~~N~TRF~vi~~~~~~  179 (184)
T d2qmwa1         157 DTHIEDYPHNVTRFLVIKNQQQF  179 (184)
T ss_dssp             EECCCSCSCCEEEEEEEESCCCC
T ss_pred             hhCCCCCCCCeEeEEEEecCCcC
Confidence            99999999999999999998654
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Back     information, alignment and structure