Citrus Sinensis ID: 018101

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGVTDMDMAGGA
cccccccHHHHHHHHHHHHccccEEEEEEcccccccHHHHccccEEEEccccHHHHHHHHHHHHHHHHccccccccccccccEEEccccccccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHcccccccccEEEEcccEEEEEccccHHHHHHHcccccHHHHHcccccEEEEEEEEcccccccccEEEEEEEEEEcccccccccccccc
cccccHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHccEEEEccccHHHHHHHHHHHHHHHHccccccccccccEEEEccccccccccEEEEEccccccEEcccccccccccccEEEEcccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccEEEEEEEEcccccccccccccEEEEcccccHHHHHHHHHHccccccccccEEccccEEEEcccHHHHHHHcHHccccHHHHcccccEEEEEEEEEEccccccEEEEEEEEEEEccccccccccccccc
MEDVGKPKAEVAAKRVMERvsgvnivphfcriedkdisfyndfNIIVLGLDSIEARSYINAVACSFleyetddkpreetikpmvdggtegfkgharviipgvtpcfectiwlfppqvkfplctlaetprtaAHCIEYAHLikwdevhsgksfdpddpehMQWVYSEAVKRAelfgipgvtysltQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTefvkdkdclvcgpgvlieldTSVTLEKFINLLEEHPKLQLAKASVTyrgknlymqappvleemtrsnlslplYDLMDKVAKDILHVtgvtgqsdkktscLRKLRVVFRgvdgvtdmdmagga
MEDVGKPKAEVAAKrvmervsgvnivphfcriedkdisFYNDFNIIVLGLDSIEARSYINAVACSFLeyetddkpreETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLleehpklqlaKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVtgvtgqsdkktsclrklrvvfrgvdgvtdmdmagga
MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKniipaiastnaiisaaCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGVTDMDMAGGA
***************VMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYET************VDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSG*********HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGV*********
*EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECT****PPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGVTD***AG**
**********VAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTG*********SCLRKLRVVFRGVDGVTDMDMAGGA
*EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGV************
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MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGVTDMDMAGGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query360 2.2.26 [Sep-21-2011]
O65041454 NEDD8-activating enzyme E yes no 1.0 0.792 0.775 1e-166
Q54QG9442 NEDD8-activating enzyme E yes no 0.861 0.701 0.474 4e-80
Q99MI7462 NEDD8-activating enzyme E yes no 0.863 0.673 0.478 1e-79
Q8C878462 NEDD8-activating enzyme E yes no 0.863 0.673 0.475 1e-79
Q5R4A0463 NEDD8-activating enzyme E yes no 0.863 0.671 0.468 3e-79
Q8TBC4463 NEDD8-activating enzyme E yes no 0.863 0.671 0.471 3e-79
Q7ZVX6462 NEDD8-activating enzyme E yes no 0.863 0.673 0.465 6e-79
Q9V6U8450 NEDD8-activating enzyme E yes no 0.863 0.691 0.481 5e-78
Q19360430 NEDD8-activating enzyme E yes no 0.866 0.725 0.479 8e-78
Q09765444 NEDD8-activating enzyme E yes no 0.833 0.675 0.382 6e-62
>sp|O65041|UBA3_ARATH NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana GN=ECR1 PE=1 SV=2 Back     alignment and function desciption
 Score =  585 bits (1508), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 280/361 (77%), Positives = 309/361 (85%), Gaps = 1/361 (0%)

Query: 1   MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYIN 60
           +EDVGKPKAEVAAKRVMERVSGV IVPHF RIEDK+I FYNDFNII LGLDSIEAR YIN
Sbjct: 94  IEDVGKPKAEVAAKRVMERVSGVEIVPHFSRIEDKEIEFYNDFNIIALGLDSIEARKYIN 153

Query: 61  AVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFP 120
            VAC FLEY  DD P+ ETIKPMVDGGTEGFKGHARVI+PGVTPCFECTI+LFPPQVKFP
Sbjct: 154 GVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVILPGVTPCFECTIYLFPPQVKFP 213

Query: 121 LCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVT 180
           LCTLAETPR AAHCIEYAHLI+W+ VH GK+FDPD+PEHM+WVY EA++RAELFGIPGVT
Sbjct: 214 LCTLAETPRNAAHCIEYAHLIQWETVHRGKTFDPDEPEHMKWVYDEAIRRAELFGIPGVT 273

Query: 181 YSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEF 240
           YSLTQGVVKNIIPAIASTNAIISAACALETLKI S CSKTL NYLTYNG  GL+ +VT+F
Sbjct: 274 YSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSKTLVNYLTYNGGEGLYTEVTKF 333

Query: 241 VKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEE 300
            +D +CLVCGPG+LIELDTSVTL KFI +LE+HPKL L+KASV      LYMQAPPVLEE
Sbjct: 334 ERDTECLVCGPGILIELDTSVTLSKFIEMLEDHPKLLLSKASVKQGENTLYMQAPPVLEE 393

Query: 301 MTRSNLSLPLYDLMDKVAKDILHVTGVTG-QSDKKTSCLRKLRVVFRGVDGVTDMDMAGG 359
             R  LS PLYDLM +V KD +HV G    ++++K SC  K+RVVF+G DGV DMD A G
Sbjct: 394 FHRPKLSKPLYDLMGRVQKDTIHVFGQRALKNNEKESCTTKVRVVFKGADGVADMDTAIG 453

Query: 360 A 360
           A
Sbjct: 454 A 454
Catalytic subunit of the dimeric ECR1-AXR1 E1 enzyme. E1 activates NEDD8/RUB1 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-ECR1 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of RCE1.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q54QG9|UBA3_DICDI NEDD8-activating enzyme E1 catalytic subunit OS=Dictyostelium discoideum GN=uba3 PE=1 SV=1 Back     alignment and function description
>sp|Q99MI7|UBA3_RAT NEDD8-activating enzyme E1 catalytic subunit OS=Rattus norvegicus GN=Uba3 PE=1 SV=1 Back     alignment and function description
>sp|Q8C878|UBA3_MOUSE NEDD8-activating enzyme E1 catalytic subunit OS=Mus musculus GN=Uba3 PE=1 SV=2 Back     alignment and function description
>sp|Q5R4A0|UBA3_PONAB NEDD8-activating enzyme E1 catalytic subunit OS=Pongo abelii GN=UBA3 PE=2 SV=2 Back     alignment and function description
>sp|Q8TBC4|UBA3_HUMAN NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2 Back     alignment and function description
>sp|Q7ZVX6|UBA3_DANRE NEDD8-activating enzyme E1 catalytic subunit OS=Danio rerio GN=uba3 PE=2 SV=1 Back     alignment and function description
>sp|Q9V6U8|UBA3_DROME NEDD8-activating enzyme E1 catalytic subunit OS=Drosophila melanogaster GN=CG13343 PE=2 SV=1 Back     alignment and function description
>sp|Q19360|UBA3_CAEEL NEDD8-activating enzyme E1 catalytic subunit OS=Caenorhabditis elegans GN=uba-3 PE=2 SV=2 Back     alignment and function description
>sp|Q09765|UBA3_SCHPO NEDD8-activating enzyme E1 catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uba3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
449432724449 PREDICTED: NEDD8-activating enzyme E1 ca 1.0 0.801 0.883 0.0
255552279449 ubiquitin-activating enzyme E1c, putativ 1.0 0.801 0.880 0.0
225432556449 PREDICTED: NEDD8-activating enzyme E1 ca 1.0 0.801 0.883 0.0
224100343449 predicted protein [Populus trichocarpa] 1.0 0.801 0.866 0.0
357480207454 NEDD8-activating enzyme E1 catalytic sub 1.0 0.792 0.85 0.0
224110476449 predicted protein [Populus trichocarpa] 1.0 0.801 0.861 0.0
356521961446 PREDICTED: NEDD8-activating enzyme E1 ca 1.0 0.807 0.836 0.0
356563478446 PREDICTED: NEDD8-activating enzyme E1 ca 1.0 0.807 0.825 0.0
148909531448 unknown [Picea sitchensis] 1.0 0.803 0.761 1e-167
297807971453 hypothetical protein ARALYDRAFT_909950 [ 1.0 0.794 0.780 1e-166
>gi|449432724|ref|XP_004134149.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Cucumis sativus] gi|449515377|ref|XP_004164726.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/360 (88%), Positives = 342/360 (95%)

Query: 1   MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYIN 60
           +EDVGKPKAEVAAKRVMERVSGVNI+PHFCRIEDK+I FYNDF+II LGLDSIEARSYIN
Sbjct: 90  LEDVGKPKAEVAAKRVMERVSGVNILPHFCRIEDKEIEFYNDFHIIALGLDSIEARSYIN 149

Query: 61  AVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFP 120
           +VACSFLEY++DD P EETIKPMVDGGTEGFKGHARVI+PGVTPCFECTIWLFPPQVKFP
Sbjct: 150 SVACSFLEYDSDDNPLEETIKPMVDGGTEGFKGHARVILPGVTPCFECTIWLFPPQVKFP 209

Query: 121 LCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVT 180
           LCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDD EHM+WVYSEA+KRAELFGIPGVT
Sbjct: 210 LCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDSEHMKWVYSEALKRAELFGIPGVT 269

Query: 181 YSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEF 240
           YSLTQGVVKNIIPAIASTNAIISAACALETLKI SGCSKTLSNYLTYNG  GLH KVTEF
Sbjct: 270 YSLTQGVVKNIIPAIASTNAIISAACALETLKIVSGCSKTLSNYLTYNGAEGLHTKVTEF 329

Query: 241 VKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEE 300
           VKDKDCLVCGPGVLIELD+S+TL+KFI+LLE+HPKL L+KASVT+RGKNLYMQAPPVLEE
Sbjct: 330 VKDKDCLVCGPGVLIELDSSITLQKFIDLLEDHPKLLLSKASVTHRGKNLYMQAPPVLEE 389

Query: 301 MTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGVTDMDMAGGA 360
           MTRSNL +PL+DLM KV KD++HVTGV  ++DKKTSCLRKLRV F+GVDGVTDMD A GA
Sbjct: 390 MTRSNLGVPLFDLMGKVLKDVVHVTGVASKNDKKTSCLRKLRVAFKGVDGVTDMDTASGA 449

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255552279|ref|XP_002517184.1| ubiquitin-activating enzyme E1c, putative [Ricinus communis] gi|223543819|gb|EEF45347.1| ubiquitin-activating enzyme E1c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225432556|ref|XP_002280928.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Vitis vinifera] gi|297736997|emb|CBI26198.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224100343|ref|XP_002311839.1| predicted protein [Populus trichocarpa] gi|222851659|gb|EEE89206.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357480207|ref|XP_003610389.1| NEDD8-activating enzyme E1 catalytic subunit [Medicago truncatula] gi|355511444|gb|AES92586.1| NEDD8-activating enzyme E1 catalytic subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|224110476|ref|XP_002315531.1| predicted protein [Populus trichocarpa] gi|222864571|gb|EEF01702.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356521961|ref|XP_003529618.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Glycine max] Back     alignment and taxonomy information
>gi|356563478|ref|XP_003549989.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Glycine max] Back     alignment and taxonomy information
>gi|148909531|gb|ABR17860.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|297807971|ref|XP_002871869.1| hypothetical protein ARALYDRAFT_909950 [Arabidopsis lyrata subsp. lyrata] gi|297317706|gb|EFH48128.1| hypothetical protein ARALYDRAFT_909950 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
TAIR|locus:2182172454 ECR1 "E1 C-terminal related 1" 0.997 0.790 0.734 4.2e-143
FB|FBgn0263697450 Uba3 "Ubiquitin activating enz 0.863 0.691 0.453 3e-69
UNIPROTKB|E1BT61463 UBA3 "Uncharacterized protein" 0.863 0.671 0.45 2.1e-68
UNIPROTKB|F1P4G8351 F1P4G8 "Uncharacterized protei 0.863 0.886 0.45 2.1e-68
RGD|621084462 Uba3 "ubiquitin-like modifier 0.863 0.673 0.443 7.2e-68
UNIPROTKB|Q99MI7462 Uba3 "NEDD8-activating enzyme 0.863 0.673 0.443 7.2e-68
MGI|MGI:1341217462 Uba3 "ubiquitin-like modifier 0.863 0.673 0.440 9.2e-68
UNIPROTKB|Q0P5I7463 UBA3 "Ubiquitin-like modifier 0.863 0.671 0.437 1.9e-67
UNIPROTKB|F8W8D4422 UBA3 "NEDD8-activating enzyme 0.863 0.736 0.437 1.9e-67
UNIPROTKB|Q8TBC4463 UBA3 "NEDD8-activating enzyme 0.863 0.671 0.437 1.9e-67
TAIR|locus:2182172 ECR1 "E1 C-terminal related 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1399 (497.5 bits), Expect = 4.2e-143, P = 4.2e-143
 Identities = 266/362 (73%), Positives = 297/362 (82%)

Query:     1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYIN 60
             +EDVGKPKAEVAAKRVMERVSGV IVPHF RIEDK+I FYNDFNII LGLDSIEAR YIN
Sbjct:    94 IEDVGKPKAEVAAKRVMERVSGVEIVPHFSRIEDKEIEFYNDFNIIALGLDSIEARKYIN 153

Query:    61 AVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFP 120
              VAC FLEY  DD P+ ETIKPMVDGGTEGFKGHARVI+PGVTPCFECTI+LFPPQVKFP
Sbjct:   154 GVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVILPGVTPCFECTIYLFPPQVKFP 213

Query:   121 LCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVT 180
             LCTLAETPR AAHCIEYAHLI+W+ VH GK+FDPD+PEHM+WVY EA++RAELFGIPGVT
Sbjct:   214 LCTLAETPRNAAHCIEYAHLIQWETVHRGKTFDPDEPEHMKWVYDEAIRRAELFGIPGVT 273

Query:   181 YSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEF 240
             YSLTQGVVK                CALETLKI S CSKTL NYLTYNG  GL+ +VT+F
Sbjct:   274 YSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSKTLVNYLTYNGGEGLYTEVTKF 333

Query:   241 VKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKN-LYMQAPPVLE 299
              +D +CLVCGPG+LIELDTSVTL KFI +LE+HPKL L+KASV  +G+N LYMQAPPVLE
Sbjct:   334 ERDTECLVCGPGILIELDTSVTLSKFIEMLEDHPKLLLSKASVK-QGENTLYMQAPPVLE 392

Query:   300 EMTRSNLSLPLYDLMDKVAKDILHVTGVTG-QSDKKTSCLRKLRVVFRGVDGVTDMDMAG 358
             E  R  LS PLYDLM +V KD +HV G    ++++K SC  K+RVVF+G DGV DMD A 
Sbjct:   393 EFHRPKLSKPLYDLMGRVQKDTIHVFGQRALKNNEKESCTTKVRVVFKGADGVADMDTAI 452

Query:   359 GA 360
             GA
Sbjct:   453 GA 454
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0008641 "small protein activating enzyme activity" evidence=IEA;IDA
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
GO:0045116 "protein neddylation" evidence=IEA;TAS
GO:0019781 "NEDD8 activating enzyme activity" evidence=IDA
GO:0046982 "protein heterodimerization activity" evidence=NAS
FB|FBgn0263697 Uba3 "Ubiquitin activating enzyme 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BT61 UBA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4G8 F1P4G8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|621084 Uba3 "ubiquitin-like modifier activating enzyme 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q99MI7 Uba3 "NEDD8-activating enzyme E1 catalytic subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1341217 Uba3 "ubiquitin-like modifier activating enzyme 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P5I7 UBA3 "Ubiquitin-like modifier activating enzyme 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F8W8D4 UBA3 "NEDD8-activating enzyme E1 catalytic subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TBC4 UBA3 "NEDD8-activating enzyme E1 catalytic subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O65041UBA3_ARATH6, ., 3, ., 2, ., -0.77561.00.7929yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
cd01488291 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1 1e-158
cd01484234 cd01484, E1-2_like, Ubiquitin activating enzyme (E 3e-67
cd01489312 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E 8e-42
pfam0213466 pfam02134, UBACT, Repeat in ubiquitin-activating ( 5e-28
pfam0882585 pfam08825, E2_bind, E2 binding domain 1e-25
cd01490435 cd01490, Ube1_repeat2, Ubiquitin activating enzyme 4e-25
cd00757228 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA 1e-16
COG0476254 COG0476, ThiF, Dinucleotide-utilizing enzymes invo 2e-16
TIGR01408 1008 TIGR01408, Ube1, ubiquitin-activating enzyme E1 8e-15
pfam00899134 pfam00899, ThiF, ThiF family 3e-14
cd01483143 cd01483, E1_enzyme_family, Superfamily of activati 5e-14
pfam1058544 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating e 5e-10
TIGR02356202 TIGR02356, adenyl_thiF, thiazole biosynthesis aden 3e-07
PRK08762376 PRK08762, PRK08762, molybdopterin biosynthesis pro 2e-06
PRK12475338 PRK12475, PRK12475, thiamine/molybdopterin biosynt 1e-05
PRK08328231 PRK08328, PRK08328, hypothetical protein; Provisio 3e-05
TIGR014081008 TIGR01408, Ube1, ubiquitin-activating enzyme E1 2e-04
PRK07878392 PRK07878, PRK07878, molybdopterin biosynthesis-lik 0.001
pfam0523777 pfam05237, MoeZ_MoeB, MoeZ/MoeB domain 0.001
PRK07688339 PRK07688, PRK07688, thiamine/molybdopterin biosynt 0.001
PRK05690245 PRK05690, PRK05690, molybdopterin biosynthesis pro 0.003
>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3 Back     alignment and domain information 
 Score =  444 bits (1143), Expect = e-158
 Identities = 151/250 (60%), Positives = 183/250 (73%), Gaps = 5/250 (2%)

Query: 1   MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYIN 60
            +D+GKPKAEVAAK V +RV GVN+ PHF +I+DKD  FY  FNII+ GLDSIEAR +IN
Sbjct: 47  EKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQDKDEEFYRQFNIIICGLDSIEARRWIN 106

Query: 61  AVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFP 120
               S L YE       E+I P++DGGTEGFKGHARVI+PG+T C EC++ LFPPQV FP
Sbjct: 107 GTLVSLLLYED-----PESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTFP 161

Query: 121 LCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVT 180
           LCT+A TPR   HCIEYA LI+W +       D DDPEH++W+Y +A++RA  F I GVT
Sbjct: 162 LCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVT 221

Query: 181 YSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEF 240
           YSLTQGVVK IIPA+ASTNAII+AAC LE LKIA+ C + L+NYL YNGV G +    E 
Sbjct: 222 YSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCYTYTFEH 281

Query: 241 VKDKDCLVCG 250
            + +DC VC 
Sbjct: 282 ERKEDCPVCS 291

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291
>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like Back     alignment and domain information
>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2 Back     alignment and domain information
>gnl|CDD|202124 pfam02134, UBACT, Repeat in ubiquitin-activating (UBA) protein Back     alignment and domain information
>gnl|CDD|192164 pfam08825, E2_bind, E2 binding domain Back     alignment and domain information
>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2 Back     alignment and domain information
>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA Back     alignment and domain information
>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1 Back     alignment and domain information
>gnl|CDD|216180 pfam00899, ThiF, ThiF family Back     alignment and domain information
>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins Back     alignment and domain information
>gnl|CDD|192635 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active site Back     alignment and domain information
>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E Back     alignment and domain information
>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>gnl|CDD|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional Back     alignment and domain information
>gnl|CDD|169382 PRK08328, PRK08328, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1 Back     alignment and domain information
>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated Back     alignment and domain information
>gnl|CDD|113988 pfam05237, MoeZ_MoeB, MoeZ/MoeB domain Back     alignment and domain information
>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated Back     alignment and domain information
>gnl|CDD|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 360
KOG2015422 consensus NEDD8-activating complex, catalytic comp 100.0
cd01488291 Uba3_RUB Ubiquitin activating enzyme (E1) subunit 100.0
KOG2013603 consensus SMT3/SUMO-activating complex, catalytic 100.0
cd01490435 Ube1_repeat2 Ubiquitin activating enzyme (E1), rep 100.0
TIGR014081008 Ube1 ubiquitin-activating enzyme E1. This model re 100.0
cd01489312 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit 100.0
KOG20121013 consensus Ubiquitin activating enzyme UBA1 [Posttr 100.0
cd01484234 E1-2_like Ubiquitin activating enzyme (E1), repeat 100.0
TIGR02355240 moeB molybdopterin synthase sulfurylase MoeB. This 99.96
PRK07411390 hypothetical protein; Validated 99.95
PRK08762376 molybdopterin biosynthesis protein MoeB; Validated 99.95
PRK05597355 molybdopterin biosynthesis protein MoeB; Validated 99.95
PRK05600370 thiamine biosynthesis protein ThiF; Validated 99.95
PRK05690245 molybdopterin biosynthesis protein MoeB; Provision 99.95
PRK07878392 molybdopterin biosynthesis-like protein MoeZ; Vali 99.94
PRK12475338 thiamine/molybdopterin biosynthesis MoeB-like prot 99.94
KOG2017427 consensus Molybdopterin synthase sulfurylase [Coen 99.94
PRK07688339 thiamine/molybdopterin biosynthesis ThiF/MoeB-like 99.94
PRK08223287 hypothetical protein; Validated 99.93
TIGR03603318 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy 99.93
cd00757228 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 99.92
PRK08328231 hypothetical protein; Provisional 99.92
TIGR02356202 adenyl_thiF thiazole biosynthesis adenylyltransfer 99.91
COG0476254 ThiF Dinucleotide-utilizing enzymes involved in mo 99.9
cd01491286 Ube1_repeat1 Ubiquitin activating enzyme (E1), rep 99.88
cd01492197 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit 99.85
cd01485198 E1-1_like Ubiquitin activating enzyme (E1), repeat 99.81
KOG2014331 consensus SMT3/SUMO-activating complex, AOS1/RAD31 99.79
PRK08644212 thiamine biosynthesis protein ThiF; Provisional 99.78
PF0213467 UBACT: Repeat in ubiquitin-activating (UBA) protei 99.77
cd01487174 E1_ThiF_like E1_ThiF_like. Member of superfamily o 99.75
TIGR01381664 E1_like_apg7 E1-like protein-activating enzyme Gsa 99.74
PRK14852 989 hypothetical protein; Provisional 99.74
KOG2336422 consensus Molybdopterin biosynthesis-related prote 99.72
TIGR01408 1008 Ube1 ubiquitin-activating enzyme E1. This model re 99.72
PRK14851 679 hypothetical protein; Provisional 99.69
cd01493425 APPBP1_RUB Ubiquitin activating enzyme (E1) subuni 99.69
PRK07877 722 hypothetical protein; Provisional 99.69
TIGR03736244 PRTRC_ThiF PRTRC system ThiF family protein. A nov 99.67
PF0882584 E2_bind: E2 binding domain; InterPro: IPR014929 E1 99.66
PF00899135 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a 99.58
cd01483143 E1_enzyme_family Superfamily of activating enzymes 99.58
cd01486307 Apg7 Apg7 is an E1-like protein, that activates tw 99.56
TIGR02354200 thiF_fam2 thiamine biosynthesis protein ThiF, fami 99.53
PF1058545 UBA_e1_thiolCys: Ubiquitin-activating enzyme activ 99.46
cd00755231 YgdL_like Family of activating enzymes (E1) of ubi 99.27
PF0523784 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 T 99.22
TIGR03693 637 ocin_ThiF_like putative thiazole-containing bacter 99.2
PRK15116268 sulfur acceptor protein CsdL; Provisional 99.14
KOG2012 1013 consensus Ubiquitin activating enzyme UBA1 [Posttr 99.14
PRK06153393 hypothetical protein; Provisional 99.13
COG1179263 Dinucleotide-utilizing enzymes involved in molybdo 99.11
KOG2016523 consensus NEDD8-activating complex, APP-BP1/UBA5 c 99.05
PF1473287 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquiti 98.91
PF09358125 UBA_e1_C: Ubiquitin-activating enzyme e1 C-termina 98.76
KOG2018430 consensus Predicted dinucleotide-utilizing enzyme 98.31
KOG2337669 consensus Ubiquitin activating E1 enzyme-like prot 97.67
PTZ00245287 ubiquitin activating enzyme; Provisional 96.8
TIGR03882193 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr 92.21
PF01113124 DapB_N: Dihydrodipicolinate reductase, N-terminus; 85.13
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-75  Score=543.22  Aligned_cols=331  Identities=46%  Similarity=0.763  Sum_probs=315.6

Q ss_pred             CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101            1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI   80 (360)
Q Consensus         1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~   80 (360)
                      ++|||+|||++||++++++.|++.|.+|..+|++++++||++||+||+++|++++|+|||.+.+.+..+   |.++...-
T Consensus        88 ~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~---g~~d~~~i  164 (422)
T KOG2015|consen   88 ESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLE---GNYDISSI  164 (422)
T ss_pred             ccccCchhHHHHHHHHHhhCCCcEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhc---cCCCccce
Confidence            579999999999999999999999999999999999999999999999999999999999999876654   77888889


Q ss_pred             CcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCC-CCCCCCChhH
Q 018101           81 KPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSG-KSFDPDDPEH  159 (360)
Q Consensus        81 iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~-~~fd~dd~~~  159 (360)
                      +||||||++|++|++++|+|+.|+|++|..+.+|++.++|+|||+|+|+.|||||+|++.++|++.++. ..+|.||++|
T Consensus       165 iPlIDGGtEG~KG~arvI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~g~~~~gdd~~h  244 (422)
T KOG2015|consen  165 IPLIDGGTEGFKGHARVIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPFGVPLDGDDPEH  244 (422)
T ss_pred             eeeeecCcccccceeEEEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCccCCCCCCCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999876 6799999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCcccceeeeecccCceeeeee
Q 018101          160 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTE  239 (360)
Q Consensus       160 l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~n~~~~~~~~~~~~~~~~  239 (360)
                      ++||++.+++||.+|+|.++++.+++|++++||||+|+|||+||+.+|.|++|+++....+++||++|++..|.+++++.
T Consensus       245 I~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~ytytf~  324 (422)
T KOG2015|consen  245 IEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGIYTYTFL  324 (422)
T ss_pred             HHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccceeEEEee
Confidence            99999999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             cccCCCCccCCC-ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeC-CcEEEecCCCChhHhhhccCCCchHHhhccc
Q 018101          240 FVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYR-GKNLYMQAPPVLEEMTRSNLSLPLYDLMDKV  317 (360)
Q Consensus       240 ~~~~~~C~vC~~-~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~-~~~LY~~~~~~~~~~~~~~L~k~l~elv~~g  317 (360)
                      ++|.++|++|+. ...+.+.+..||+++++++++.+  ++..|.+++. ...||.++++++++.+++||.++|.|| .+|
T Consensus       325 ~er~~nC~vCS~~~~~~~ispt~tl~~vl~~ls~~~--~lk~p~~tt~~~~~ly~~~~~~~e~~t~~nl~~~l~~l-~dg  401 (422)
T KOG2015|consen  325 LERDKNCPVCSNLVQNYDISPTVTLEDVLNHLSKSF--QLKSPALTTAAGRTLYLSSVPSIEEATRKNLSQSLKEL-SDG  401 (422)
T ss_pred             eccCCCCccccCCCcccccCCcccHHHHHHHhhhhh--ccCCchhhhhhcceEeecCCcHHHHHhhhhhhhhHHHh-cCC
Confidence            999999999998 77778888999999999999765  9999999854 579999999999999999999999999 888


Q ss_pred             ccceeeeccccccccCCcceeEEEEEEE
Q 018101          318 AKDILHVTGVTGQSDKKTSCLRKLRVVF  345 (360)
Q Consensus       318 ~~~~l~~~~~~~v~d~~~~~~~~~~~~~  345 (360)
                        .+|      .|||.+.+..+.|+|++
T Consensus       402 --~~l------~vtd~~~~~~l~~~l~~  421 (422)
T KOG2015|consen  402 --QEL------VVTDKTLSTALTLQLRE  421 (422)
T ss_pred             --ceE------EEecccCCcceeEEEec
Confidence              899      99999999999999986

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 Back     alignment and domain information
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 Back     alignment and domain information
>TIGR01408 Ube1 ubiquitin-activating enzyme E1 Back     alignment and domain information
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 Back     alignment and domain information
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like Back     alignment and domain information
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB Back     alignment and domain information
>PRK07411 hypothetical protein; Validated Back     alignment and domain information
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>PRK05600 thiamine biosynthesis protein ThiF; Validated Back     alignment and domain information
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional Back     alignment and domain information
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated Back     alignment and domain information
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional Back     alignment and domain information
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated Back     alignment and domain information
>PRK08223 hypothetical protein; Validated Back     alignment and domain information
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family Back     alignment and domain information
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA Back     alignment and domain information
>PRK08328 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E Back     alignment and domain information
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism] Back     alignment and domain information
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 Back     alignment and domain information
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 Back     alignment and domain information
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like Back     alignment and domain information
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08644 thiamine biosynthesis protein ThiF; Provisional Back     alignment and domain information
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ] Back     alignment and domain information
>cd01487 E1_ThiF_like E1_ThiF_like Back     alignment and domain information
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p Back     alignment and domain information
>PRK14852 hypothetical protein; Provisional Back     alignment and domain information
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR01408 Ube1 ubiquitin-activating enzyme E1 Back     alignment and domain information
>PRK14851 hypothetical protein; Provisional Back     alignment and domain information
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 Back     alignment and domain information
>PRK07877 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein Back     alignment and domain information
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades Back     alignment and domain information
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP Back     alignment and domain information
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins Back     alignment and domain information
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively Back     alignment and domain information
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 Back     alignment and domain information
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP Back     alignment and domain information
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E Back     alignment and domain information
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein Back     alignment and domain information
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein Back     alignment and domain information
>PRK15116 sulfur acceptor protein CsdL; Provisional Back     alignment and domain information
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06153 hypothetical protein; Provisional Back     alignment and domain information
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] Back     alignment and domain information
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B Back     alignment and domain information
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised Back     alignment and domain information
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism] Back     alignment and domain information
>PTZ00245 ubiquitin activating enzyme; Provisional Back     alignment and domain information
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain Back     alignment and domain information
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
1tt5_B434 Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I 3e-72
2nvu_B805 Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1 3e-72
3gzn_B463 Structure Of Nedd8-Activating Enzyme In Complex Wit 3e-72
1yov_B444 Insights Into The Ubiquitin Transfer Cascade From T 4e-72
3dbl_B434 Structural Dissection Of A Gating Mechanism Prevent 3e-71
1r4m_B431 Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com 3e-71
3dbr_B434 Structural Dissection Of A Gating Mechanism Prevent 1e-70
3dbh_B434 Structural Dissection Of A Gating Mechanism Prevent 2e-70
3kyc_B 660 Human Sumo E1 Complex With A Sumo1-Amp Mimic Length 2e-14
3kyd_B 551 Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mi 2e-14
1y8q_B 640 Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex 2e-13
3cmm_A 1015 Crystal Structure Of The Uba1-Ubiquitin Complex Len 4e-10
4ii2_A 1001 Crystal Structure Of Ubiquitin Activating Enzyme 1 2e-09
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 434 Back     alignment and structure 
Iteration: 1

 Score =  268 bits (686), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 140/320 (43%), Positives = 195/320 (60%), Gaps = 9/320 (2%)
Query: 2   EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA 61
           +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLDSI AR +IN 
Sbjct: 89  KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWING 148
Query: 62  VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 121
           +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+
Sbjct: 149 MLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPM 207
Query: 122 CTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPG 178
           CT+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ ++++RA  + I G
Sbjct: 208 CTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRG 267
Query: 179 VTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVT 238
           VTY LTQGVVK                CA E  KIA+     L+NYL +N V GL+    
Sbjct: 268 VTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTF 327
Query: 239 EFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQ 293
           E  + ++C  C      I+   S  L++ ++ L     LQ+   ++  T  GKN  LY+Q
Sbjct: 328 EAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQ 387
Query: 294 APPVLEEMTRSNLSLPLYDL 313
           +   +EE TR NLS  L +L
Sbjct: 388 SVTSIEERTRPNLSKTLKEL 407
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 805 Back     alignment and structure
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 463 Back     alignment and structure
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 444 Back     alignment and structure
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 434 Back     alignment and structure
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 431 Back     alignment and structure
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190gln-Nedd8ala72arg) Length = 434 Back     alignment and structure
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 434 Back     alignment and structure
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic Length = 660 Back     alignment and structure
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic Length = 551 Back     alignment and structure
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 640 Back     alignment and structure
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015 Back     alignment and structure
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
2nvu_B805 Maltose binding protein/NEDD8-activating enzyme E1 1e-136
1tt5_B434 Ubiquitin-activating enzyme E1C isoform 1; cell cy 1e-121
1y8q_B 640 Anthracycline-, ubiquitin-like 2 activating enzyme 3e-50
1y8q_B640 Anthracycline-, ubiquitin-like 2 activating enzyme 1e-38
3cmm_A1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 4e-37
3cmm_A 1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 2e-34
3cmm_A 1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 4e-19
1tt5_A 531 APPBP1, amyloid protein-binding protein 1; cell cy 4e-25
1y8x_B98 Ubiquitin-activating enzyme E1C; ubiquitin-conjuga 1e-20
1y8q_A346 Ubiquitin-like 1 activating enzyme E1A; SUMO, hete 7e-17
3h5n_A353 MCCB protein; ubiquitin-activating enzyme, microci 2e-13
3h8v_A292 Ubiquitin-like modifier-activating enzyme 5; rossm 4e-11
1zud_1251 Adenylyltransferase THIF; thiamin, thiazole, prote 6e-09
1jw9_B249 Molybdopterin biosynthesis MOEB protein; MOEB: mod 1e-08
3rui_A340 Ubiquitin-like modifier-activating enzyme ATG7; au 3e-07
3vh1_A598 Ubiquitin-like modifier-activating enzyme ATG7; au 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805 Back     alignment and structure
 Score =  407 bits (1047), Expect = e-136
 Identities = 154/352 (43%), Positives = 216/352 (61%), Gaps = 16/352 (4%)

Query: 2   EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA 61
           +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLDSI AR +IN 
Sbjct: 460 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWING 519

Query: 62  VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 121
           +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+
Sbjct: 520 MLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPM 578

Query: 122 CTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPG 178
           CT+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ ++++RA  + I G
Sbjct: 579 CTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRG 638

Query: 179 VTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVT 238
           VTY LTQGVVK IIPA+ASTNA+I+A CA E  KIA+     L+NYL +N V GL+    
Sbjct: 639 VTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTF 698

Query: 239 EFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVT----YRGKNLYMQ 293
           E  + ++C  C      I+   S  L++ ++ L     LQ+   ++T     + + LY+Q
Sbjct: 699 EAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQ 758

Query: 294 APPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVF 345
           +   +EE TR NLS  L +L   V    L V       D  T      ++ F
Sbjct: 759 SVTSIEERTRPNLSKTLKEL-GLVDGQELAVA------DVTTPQTVLFKLHF 803
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434 Back     alignment and structure
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640 Back     alignment and structure
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640 Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015 Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015 Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015 Back     alignment and structure
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531 Back     alignment and structure
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A Length = 98 Back     alignment and structure
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346 Back     alignment and structure
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Length = 292 Back     alignment and structure
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Length = 251 Back     alignment and structure
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Length = 249 Back     alignment and structure
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Length = 340 Back     alignment and structure
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Length = 598 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
1tt5_B434 Ubiquitin-activating enzyme E1C isoform 1; cell cy 100.0
1y8q_B640 Anthracycline-, ubiquitin-like 2 activating enzyme 100.0
2nvu_B805 Maltose binding protein/NEDD8-activating enzyme E1 100.0
3cmm_A1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 100.0
1y8q_A346 Ubiquitin-like 1 activating enzyme E1A; SUMO, hete 99.97
3h8v_A292 Ubiquitin-like modifier-activating enzyme 5; rossm 99.96
1zud_1251 Adenylyltransferase THIF; thiamin, thiazole, prote 99.95
1jw9_B249 Molybdopterin biosynthesis MOEB protein; MOEB: mod 99.94
3h5n_A353 MCCB protein; ubiquitin-activating enzyme, microci 99.93
3rui_A340 Ubiquitin-like modifier-activating enzyme ATG7; au 99.92
4gsl_A615 Ubiquitin-like modifier-activating enzyme ATG7; ub 99.9
1tt5_A 531 APPBP1, amyloid protein-binding protein 1; cell cy 99.88
3vh1_A598 Ubiquitin-like modifier-activating enzyme ATG7; au 99.88
3cmm_A 1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 99.83
1z7l_A276 Ubiquitin-activating enzyme E1 1; SCCH, second cat 99.71
1y8x_B98 Ubiquitin-activating enzyme E1C; ubiquitin-conjuga 99.66
3onh_A127 Ubiquitin-activating enzyme E1-like; ligase, SUMO 97.14
1z7l_A276 Ubiquitin-activating enzyme E1 1; SCCH, second cat 92.08
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Back     alignment and structure
Probab=100.00  E-value=4.7e-68  Score=531.93  Aligned_cols=337  Identities=45%  Similarity=0.784  Sum_probs=298.8

Q ss_pred             CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101            1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI   80 (360)
Q Consensus         1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~   80 (360)
                      ++|||++||++|+++++++||+++|+++..++.+.+.++++++|+||+|+||+++|+|+|++|+.+.++.+ |.+...++
T Consensus        88 ~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~~~-g~~~~~~~  166 (434)
T 1tt5_B           88 PKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYED-GVLDPSSI  166 (434)
T ss_dssp             GGGTTSBHHHHHHHHHHHHSTTCCCEEEESCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCBSS-SCBCGGGC
T ss_pred             hhHcCcHHHHHHHHHHHhhCCCCEEEEEecccchhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhccc-cccccccC
Confidence            36899999999999999999999999999999887789999999999999999999999999986555533 55555679


Q ss_pred             CcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCC---CCCCCCCh
Q 018101           81 KPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSG---KSFDPDDP  157 (360)
Q Consensus        81 iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~---~~fd~dd~  157 (360)
                      +|||++|+.|+.||++++.|+.++||+|.++..|+++.+|.||++++|+.|+|||+||+.+.|+..++.   ..||+|++
T Consensus       167 iPli~~~~~g~~G~v~v~~p~~t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i~~~~~~~~~~~~~~d~d~~  246 (434)
T 1tt5_B          167 VPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDP  246 (434)
T ss_dssp             CCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHSCTTCTTCCCCTTCH
T ss_pred             CcEEEeccccceeEEEEECCCCCCCcccccCCCCCcCCCcccccccCCcchhHHHHHHHHHHHhhhcccccccccCCCcH
Confidence            999999999999999999999999999998777788899999999999999999999999999887743   58999999


Q ss_pred             hHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCcccceeeeecccCceeee
Q 018101          158 EHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKV  237 (360)
Q Consensus       158 ~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~n~~~~~~~~~~~~~~  237 (360)
                      +|++|+++.|++||..|||.+.+++.++|++++|+|||+||+|||||++++|++|+|+|.++++++++.|++..+.+.+.
T Consensus       247 ~~~~~v~~~a~~~~~~~gi~~~~~~~~~gv~~~iipaia~t~aiig~l~a~EaiK~l~g~~~~l~~~l~~d~~~~~~~~~  326 (434)
T 1tt5_B          247 EHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYT  326 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTCSCCCCSEEEEECSBSCEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCHHHHHhHhhccCcccccHHHHHHHHHHHHHHHHHhCCCcccCceEEEEcCCCceeEE
Confidence            99999999999999999999999999999999999999999999999999999999999998899999999998887778


Q ss_pred             eecccCCCCccCCC-ceEEEeCCCCCHHHHHHHHhcCccccceeceeee----CCcEEEecCCCChhHhhhccCCCchHH
Q 018101          238 TEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTY----RGKNLYMQAPPVLEEMTRSNLSLPLYD  312 (360)
Q Consensus       238 ~~~~~~~~C~vC~~-~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~----~~~~LY~~~~~~~~~~~~~~L~k~l~e  312 (360)
                      +.++|+|+|++|+. |..+.+++++||++|++.+++++.++++.|+|++    ++++||+++++++++.+++||.|+|+|
T Consensus       327 ~~~~~~~~C~vC~~~~~~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~  406 (434)
T 1tt5_B          327 FEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKE  406 (434)
T ss_dssp             ECCCCCTTCTTTCSSCBCCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC----
T ss_pred             EeccCCCCCCccCCCCceEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHH
Confidence            88899999999999 8888888889999999999999888999999988    589999999888998899999999999


Q ss_pred             h-hcccccceeeeccccccccCCcceeEEEEEEEe
Q 018101          313 L-MDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFR  346 (360)
Q Consensus       313 l-v~~g~~~~l~~~~~~~v~d~~~~~~~~~~~~~~  346 (360)
                      | +.+|  +++      .|+|+..+.+++++|+|.
T Consensus       407 l~~~~g--~~~------~v~d~~~~~~~~~~~~~~  433 (434)
T 1tt5_B          407 LGLVDG--QEL------AVADVTTPQTVLFKLHFT  433 (434)
T ss_dssp             -CCCSS--CCE------ECCCTTCSSCCEEC----
T ss_pred             cCCCCC--CEE------EEECCCCcccEEEEEEec
Confidence            9 9999  899      999999999999999986
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Back     alignment and structure
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Back     alignment and structure
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Back     alignment and structure
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Back     alignment and structure
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Back     alignment and structure
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Back     alignment and structure
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A Back     alignment and structure
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Back     alignment and structure
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus} Back     alignment and structure
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A Back     alignment and structure
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A Back     alignment and structure
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 360
d1yovb1426 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T 1e-102
d1yova1 529 c.111.1.2 (A:6-534) Amyloid beta precursor protein 8e-25
d1y8xb192 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [ 5e-21
d1jw9b_247 c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr 0.001
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  305 bits (783), Expect = e-102
 Identities = 149/335 (44%), Positives = 208/335 (62%), Gaps = 10/335 (2%)

Query: 2   EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA 61
           +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLDSI AR +IN 
Sbjct: 86  KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWING 145

Query: 62  VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 121
                L    D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+
Sbjct: 146 -MLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPM 204

Query: 122 CTLAETPRTAAHCIEYAHLIKWDEVHS---GKSFDPDDPEHMQWVYSEAVKRAELFGIPG 178
           CT+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ ++++RA  + I G
Sbjct: 205 CTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRG 264

Query: 179 VTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVT 238
           VTY LTQGVVK IIPA+ASTNA+I+A CA E  KIA+     L+NYL +N V GL+    
Sbjct: 265 VTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTF 324

Query: 239 EFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVT----YRGKNLYMQ 293
           E  + ++C  C      I+   S  L++ ++ L     LQ+   ++T     + + LY+Q
Sbjct: 325 EAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQ 384

Query: 294 APPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVT 328
           +   +EE TR NLS  L +L        L V  VT
Sbjct: 385 SVTSIEERTRPNLSKTLKELGLVDG-QELAVADVT 418
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 92 Back     information, alignment and structure
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
d1yovb1426 UBA3 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1jw9b_247 Molybdenum cofactor biosynthesis protein MoeB {Esc 99.94
d1yova1 529 Amyloid beta precursor protein-binding protein 1, 99.81
d1y8xb192 UBA3 {Human (Homo sapiens) [TaxId: 9606]} 99.58
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-73  Score=566.82  Aligned_cols=333  Identities=45%  Similarity=0.803  Sum_probs=287.2

Q ss_pred             CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101            1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI   80 (360)
Q Consensus         1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~   80 (360)
                      ++|||++||++|+++++++||+++|+++..++.+.+.+|+++||+|++|+||+++|+++|++|+.+..+. ++.+..+.+
T Consensus        85 ~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c~~l~k~~-~~~~~~~~~  163 (426)
T d1yovb1          85 PKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSI  163 (426)
T ss_dssp             GGGTTSBHHHHHHHHHHHHSTTCCCEEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCEE-TTEECGGGC
T ss_pred             hhHcCcHHHHHHHHHHHhhCCCCceEeeeccccchHHHHHHhcchheeccCcHHHHHHHHHHHHHhhccc-ccccccccC
Confidence            3699999999999999999999999999999998888999999999999999999999999998665542 334455788


Q ss_pred             CcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhc---CCCCCCCCCh
Q 018101           81 KPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDP  157 (360)
Q Consensus        81 iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~---~~~~fd~dd~  157 (360)
                      +|||+||+.|+.||+++++|+.|+||+|.++..|+++++|.|||+++|+.|+|||+||+.++|.+.+   .+..+|+||+
T Consensus       164 iPlI~gg~~G~~G~~~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~hci~~ak~l~~~~~~~~~~~~~~d~dd~  243 (426)
T d1yovb1         164 VPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDP  243 (426)
T ss_dssp             CCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHSCTTSTTCCCCTTCH
T ss_pred             CceEEeEEeeeEEEEEEECCCCCCCcCcCCCCCCCCCCCCcccccCCCCCchheeehhhhhcccccccccccCCCCCCCH
Confidence            9999999999999999999999999999998889999999999999999999999999999998876   4678999999


Q ss_pred             hHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCcccceeeeecccCceeee
Q 018101          158 EHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKV  237 (360)
Q Consensus       158 ~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~n~~~~~~~~~~~~~~  237 (360)
                      +|++||+++|++||.+|+|++.+++.+++++||||||||||||||||++++|++|+++++..+++|+++|++..+.+...
T Consensus       244 ~~i~~i~~~a~~ra~~~~I~~~~~~~~k~ia~nIIPaiatTnAIVagl~~~E~iK~lt~~~~p~~n~~~~~~~~~~~~~~  323 (426)
T d1yovb1         244 EHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYT  323 (426)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCSEEEEECSBSCEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCccHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhcCCccccceEEEecCCCceEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             eecccCCCCccCCC-ceEEEeCCCCCHHHHHHHHhcCccccceeceeee----CCcEEEecCCCChhHhhhccCCCchHH
Q 018101          238 TEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTY----RGKNLYMQAPPVLEEMTRSNLSLPLYD  312 (360)
Q Consensus       238 ~~~~~~~~C~vC~~-~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~----~~~~LY~~~~~~~~~~~~~~L~k~l~e  312 (360)
                      ++++|+|+|++|+. +.++.+++++||++|++.+++++++++..|++..    ++++||+.+++++++.+++||+|+|+|
T Consensus       324 ~~~~k~~~C~vC~~~~~~~~~~~~~tL~~li~~~~~~~~l~~~~p~~~~~~~~~~~~Ly~~~~~~le~~~~~nl~k~L~e  403 (426)
T d1yovb1         324 FEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKE  403 (426)
T ss_dssp             ECCCCCTTCTTTCSSCBCCC------CTTHHHHTTTCSSSCCSSCCEECC-----CEECCCC----CGGGSTTC------
T ss_pred             eeccCCCCCCeeCCceEEEEECCCCCHHHHHHHHHHhhCcCccCCcceeeecCCCcEEEecCCchhhHHhhhhhcCCHHH
Confidence            99999999999998 7778888889999999999999989998887743    578999999999999999999999999


Q ss_pred             h-hcccccceeeeccccccccCCcceeEEEE
Q 018101          313 L-MDKVAKDILHVTGVTGQSDKKTSCLRKLR  342 (360)
Q Consensus       313 l-v~~g~~~~l~~~~~~~v~d~~~~~~~~~~  342 (360)
                      | +.+|  ++|      .|+|++.|.++.||
T Consensus       404 L~~~~g--~~l------~v~D~~~~~~~~~~  426 (426)
T d1yovb1         404 LGLVDG--QEL------AVADVTTPQTVLFK  426 (426)
T ss_dssp             ----------C------BCCBTTBSSCCBBC
T ss_pred             hCCCCC--CEE------EEECCCCCcceecC
Confidence            9 9999  899      99999999887664
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure