Citrus Sinensis ID: 018105

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
MASATAPTTLSLVKTAASSSLSSPRASFLRMPTSASRRLGFSAADPLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSYK
cccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHHcHHHHHHHcccEEEEEcccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHccccEEEEccHHHHHHHcHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHHcEEEEEHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccEEEccccEEEcccccccccccEEEccccc
ccccccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEccccccccHcccccccEEEEcccccccccccEEcccHHHHHHHHHHHHHHHcccEEEEEccccccccccHHHccHHHHHHHHHHHccccEEccccccHHHHHHHHccccccEEEcccHHHcHccHHHHHHHHHHHHccccEEEEEcHHHcccccccccHHHHHHcccEEcHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHccEEEEcccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccEEEccccEEEEccccccccEEEEEHHHcc
masataptTLSLVKTAassslssprasflrmptsasrrlgfsaadpllTCHVASRlssiktkgTRAVVSMAKKSVgelsgadlkgkkVFVRadlnvplddnqnitddtriraAVPTIKHLIQNGAKVILSshlgrpkgvtpkfslaplvprlsellgiqvvkaddcigpEVEKLVASLPEGGVLLLENVRFykeeekndPEFAKKLASLADLYvndafgtahrahastegvtkylkpsvagFLLQKELDYLVgavsspkrpfaaivggskvssKIGVIESLLETCDILLLGGGMIFTFYKAQgisvgsslveeDKLDLATTLLAKAKAKgvnlllpsdvviadkfapdanskvcflnsyk
masatapttlSLVKtaassslssprasflRMPTSASRRLGFSAADPLLTCHVAsrlssiktkgtraVVSMAKksvgelsgadlkgkKVFVRADlnvplddnqnitddtRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLvaslpeggvLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRahastegvtkyLKPSVAGFLLQKELDYLVGAVSSPKRpfaaivggskvsSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVViadkfapdanskvcflnsyk
MASATAPttlslvktaassslssprasFLRMPTSASRRLGFSAADPLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEdkldlattllakakakGVNLLLPSDVVIADKFAPDANSKVCFLNSYK
****************************************FSAADPLLTCHVASRLSSIKTKGTRAVVS********L*GADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKE******EFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFL****
***************************************G***ADPL*********************SMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSYK
*******************************PTSASRRLGFSAADPLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSYK
*********************************************PLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSYK
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASATAPTTLSLVKTAASSSLSSPRASFLRMPTSASRRLGFSAADPLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSYK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query360 2.2.26 [Sep-21-2011]
P50318 478 Phosphoglycerate kinase 2 yes no 0.944 0.711 0.836 1e-165
Q9LD57 481 Phosphoglycerate kinase 1 no no 0.983 0.735 0.819 1e-163
Q42961 481 Phosphoglycerate kinase, N/A no 0.975 0.729 0.823 1e-163
P29409 433 Phosphoglycerate kinase, N/A no 0.852 0.709 0.880 1e-156
P12782 480 Phosphoglycerate kinase, N/A no 0.983 0.737 0.792 1e-151
Q42962 401 Phosphoglycerate kinase, N/A no 0.786 0.705 0.848 1e-138
P12783 401 Phosphoglycerate kinase, N/A no 0.786 0.705 0.823 1e-134
Q9SBN4 462 Phosphoglycerate kinase, N/A no 0.897 0.699 0.713 1e-123
Q3MF40 400 Phosphoglycerate kinase O yes no 0.802 0.722 0.709 1e-117
Q8YPR1 400 Phosphoglycerate kinase O yes no 0.802 0.722 0.705 1e-117
>sp|P50318|PGKH2_ARATH Phosphoglycerate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=3 Back     alignment and function desciption
 Score =  580 bits (1494), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 287/343 (83%), Positives = 317/343 (92%), Gaps = 3/343 (0%)

Query: 15  TAASSSLSSPRASFLRMPTSA--SRRLGFSAA-DPLLTCHVASRLSSIKTKGTRAVVSMA 71
           T  ++   S RASF  +P+++  +RRLGFSA  D   + HVAS++ S++ KG R V++MA
Sbjct: 16  TGGAAVTRSSRASFGHIPSTSVSARRLGFSAVVDSRFSVHVASKVHSVRGKGARGVITMA 75

Query: 72  KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131
           KKSVG+L+  DLKGKKVFVRADLNVPLDDNQNITDDTRIRAA+PTIK LI+NGAKVILS+
Sbjct: 76  KKSVGDLNSVDLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKFLIENGAKVILST 135

Query: 132 HLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191
           HLGRPKGVTPKFSLAPLVPRLSELLGI+VVKADDCIGPEVE LVASLPEGGVLLLENVRF
Sbjct: 136 HLGRPKGVTPKFSLAPLVPRLSELLGIEVVKADDCIGPEVETLVASLPEGGVLLLENVRF 195

Query: 192 YKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 251
           YKEEEKN+P+FAKKLASLADLYVNDAFGTAHRAHASTEGVTK+LKPSVAGFLLQKELDYL
Sbjct: 196 YKEEEKNEPDFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYL 255

Query: 252 VGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLV 311
           VGAVS+PKRPFAAIVGGSKVSSKIGVIESLLE CDILLLGGGMIFTFYKAQG+SVGSSLV
Sbjct: 256 VGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLV 315

Query: 312 EEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
           EEDKL+LATTLLAKAKA+GV+LLLP+DVVIADKFAPDANSK+ 
Sbjct: 316 EEDKLELATTLLAKAKARGVSLLLPTDVVIADKFAPDANSKIV 358

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 2EC: .EC: 3
>sp|Q9LD57|PGKH1_ARATH Phosphoglycerate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=PGK1 PE=1 SV=1 Back     alignment and function description
>sp|Q42961|PGKH_TOBAC Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P29409|PGKH_SPIOL Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2 Back     alignment and function description
>sp|P12782|PGKH_WHEAT Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1 Back     alignment and function description
>sp|Q42962|PGKY_TOBAC Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P12783|PGKY_WHEAT Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1 Back     alignment and function description
>sp|Q9SBN4|PGKH_VOLCA Phosphoglycerate kinase, chloroplastic OS=Volvox carteri GN=PGK PE=2 SV=1 Back     alignment and function description
>sp|Q3MF40|PGK_ANAVT Phosphoglycerate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pgk PE=3 SV=1 Back     alignment and function description
>sp|Q8YPR1|PGK_NOSS1 Phosphoglycerate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=pgk PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
224109060 481 predicted protein [Populus trichocarpa] 0.983 0.735 0.855 1e-171
255544584 479 phosphoglycerate kinase, putative [Ricin 0.980 0.736 0.863 1e-168
224101335 481 predicted protein [Populus trichocarpa] 0.983 0.735 0.861 1e-166
118488917 481 unknown [Populus trichocarpa x Populus d 0.983 0.735 0.858 1e-166
297847996 478 hypothetical protein ARALYDRAFT_474689 [ 0.944 0.711 0.845 1e-165
357451629 479 Phosphoglycerate kinase [Medicago trunca 0.977 0.734 0.831 1e-163
225464995 478 PREDICTED: phosphoglycerate kinase, chlo 0.925 0.696 0.863 1e-163
449444282 485 PREDICTED: phosphoglycerate kinase, chlo 0.905 0.672 0.871 1e-163
15223484 478 phosphoglycerate kinase [Arabidopsis tha 0.944 0.711 0.836 1e-163
15230595 481 phosphoglycerate kinase 1 [Arabidopsis t 0.983 0.735 0.819 1e-162
>gi|224109060|ref|XP_002315066.1| predicted protein [Populus trichocarpa] gi|222864106|gb|EEF01237.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 309/361 (85%), Positives = 331/361 (91%), Gaps = 7/361 (1%)

Query: 1   MASATAPTTLSLVKTAASSSLSSPRASFLRMPTSASRR-----LGFSAADPLLTCHVASR 55
           MASATAPTTLSL+KTAASS+ +S RAS L + TS  R      LGFSAAD L + HV S+
Sbjct: 1   MASATAPTTLSLLKTAASSTSTSVRASLLPVSTSGLRTTSLRGLGFSAADTLFSSHVVSK 60

Query: 56  LSSIKTKGT--RAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAA 113
           + S K+ G   RAVVSMAKKSVG+L+ ADLKGKKVFVRADLNVPLDDNQNITDDTRIRAA
Sbjct: 61  IRSFKSNGKAPRAVVSMAKKSVGDLTAADLKGKKVFVRADLNVPLDDNQNITDDTRIRAA 120

Query: 114 VPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK 173
           +PTIK+LI NGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK
Sbjct: 121 IPTIKYLISNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK 180

Query: 174 LVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233
           LVASLP+GGVLLLENVRFYKEEEKN+PEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK
Sbjct: 181 LVASLPDGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 240

Query: 234 YLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGG 293
           +LKPSV+GFLLQKELDYLVGAVS+PKRPFAAIVGGSKVSSKIGVIESLLE CDILLLGGG
Sbjct: 241 FLKPSVSGFLLQKELDYLVGAVSTPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGG 300

Query: 294 MIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV 353
           MIFTFYKAQG+ VGSSLVEEDKL LAT+LL KAKAKGV+LLLPSDV+IADKFAPDANSK+
Sbjct: 301 MIFTFYKAQGLPVGSSLVEEDKLGLATSLLEKAKAKGVSLLLPSDVIIADKFAPDANSKI 360

Query: 354 C 354
            
Sbjct: 361 V 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255544584|ref|XP_002513353.1| phosphoglycerate kinase, putative [Ricinus communis] gi|223547261|gb|EEF48756.1| phosphoglycerate kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224101335|ref|XP_002312238.1| predicted protein [Populus trichocarpa] gi|3738261|dbj|BAA33803.1| chloroplast phosphoglycerate kinase [Populus nigra] gi|222852058|gb|EEE89605.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118488917|gb|ABK96267.1| unknown [Populus trichocarpa x Populus deltoides] gi|118489457|gb|ABK96531.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|297847996|ref|XP_002891879.1| hypothetical protein ARALYDRAFT_474689 [Arabidopsis lyrata subsp. lyrata] gi|297337721|gb|EFH68138.1| hypothetical protein ARALYDRAFT_474689 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357451629|ref|XP_003596091.1| Phosphoglycerate kinase [Medicago truncatula] gi|355485139|gb|AES66342.1| Phosphoglycerate kinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|225464995|ref|XP_002263796.1| PREDICTED: phosphoglycerate kinase, chloroplastic isoform 1 [Vitis vinifera] gi|147843756|emb|CAN81990.1| hypothetical protein VITISV_000725 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444282|ref|XP_004139904.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Cucumis sativus] gi|449475841|ref|XP_004154567.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15223484|ref|NP_176015.1| phosphoglycerate kinase [Arabidopsis thaliana] gi|332278232|sp|P50318.3|PGKH2_ARATH RecName: Full=Phosphoglycerate kinase 2, chloroplastic; Flags: Precursor gi|12321760|gb|AAG50920.1|AC069159_21 phosphoglycerate kinase, putative [Arabidopsis thaliana] gi|15810505|gb|AAL07140.1| putative phosphoglycerate kinase [Arabidopsis thaliana] gi|20466264|gb|AAM20449.1| phosphoglycerate kinase, putative [Arabidopsis thaliana] gi|23198084|gb|AAN15569.1| phosphoglycerate kinase, putative [Arabidopsis thaliana] gi|332195235|gb|AEE33356.1| phosphoglycerate kinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15230595|ref|NP_187884.1| phosphoglycerate kinase 1 [Arabidopsis thaliana] gi|75273138|sp|Q9LD57.1|PGKH1_ARATH RecName: Full=Phosphoglycerate kinase 1, chloroplastic; Flags: Precursor gi|7839389|gb|AAF70258.1|AF247558_1 phosphoglycerate kinase [Arabidopsis thaliana] gi|13430644|gb|AAK25944.1|AF360234_1 putative phosphoglycerate kinase [Arabidopsis thaliana] gi|16226508|gb|AAL16186.1|AF428418_1 AT3g12780/MBK21_14 [Arabidopsis thaliana] gi|11994421|dbj|BAB02423.1| phosphoglycerate kinase [Arabidopsis thaliana] gi|15010644|gb|AAK73981.1| AT3g12780/MBK21_14 [Arabidopsis thaliana] gi|16648943|gb|AAL24323.1| phosphoglycerate kinase [Arabidopsis thaliana] gi|17065610|gb|AAL33785.1| putative phosphoglycerate kinase [Arabidopsis thaliana] gi|20334796|gb|AAM16259.1| AT3g12780/MBK21_14 [Arabidopsis thaliana] gi|21387107|gb|AAM47957.1| phosphoglycerate kinase [Arabidopsis thaliana] gi|22022520|gb|AAM83218.1| AT3g12780/MBK21_14 [Arabidopsis thaliana] gi|110742702|dbj|BAE99262.1| phosphoglycerate kinase like protein [Arabidopsis thaliana] gi|222423303|dbj|BAH19627.1| AT3G12780 [Arabidopsis thaliana] gi|332641725|gb|AEE75246.1| phosphoglycerate kinase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
TAIR|locus:2205215 478 AT1G56190 [Arabidopsis thalian 0.905 0.682 0.823 9.5e-137
TAIR|locus:2087750 481 PGK1 "phosphoglycerate kinase 0.980 0.733 0.769 3.2e-136
TAIR|locus:2206410 401 PGK "phosphoglycerate kinase" 0.783 0.703 0.801 7.1e-116
TIGR_CMR|CHY_0281 394 CHY_0281 "phosphoglycerate kin 0.791 0.723 0.575 1.7e-82
TIGR_CMR|BA_5367 394 BA_5367 "phosphoglycerate kina 0.788 0.720 0.520 6.5e-74
TIGR_CMR|DET_0744 397 DET_0744 "phosphoglycerate kin 0.747 0.677 0.518 2.7e-68
TIGR_CMR|CJE_1589 400 CJE_1589 "phosphoglycerate kin 0.752 0.677 0.494 9.4e-66
UNIPROTKB|F1NU17 417 PGK1 "Uncharacterized protein" 0.752 0.649 0.474 1.3e-59
TIGR_CMR|SPO_2235 398 SPO_2235 "phosphoglycerate kin 0.761 0.688 0.458 1.3e-59
DICTYBASE|DDB_G0287595 420 pgkA "calmodulin-binding prote 0.758 0.65 0.470 1.7e-59
TAIR|locus:2205215 AT1G56190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1339 (476.4 bits), Expect = 9.5e-137, P = 9.5e-137
 Identities = 271/329 (82%), Positives = 293/329 (89%)

Query:    28 FLRMP-TSAS-RRLGFSAA-DPLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLK 84
             F  +P TS S RRLGFSA  D   + HVAS++ S++ KG R V++MAKKSVG+L+  DLK
Sbjct:    29 FGHIPSTSVSARRLGFSAVVDSRFSVHVASKVHSVRGKGARGVITMAKKSVGDLNSVDLK 88

Query:    85 GKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFS 144
             GKKVFVRADLNVPLDDNQNITDDTRIRAA+PTIK LI+NGAKVILS+HLGRPKGVTPKFS
Sbjct:    89 GKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKFLIENGAKVILSTHLGRPKGVTPKFS 148

Query:   145 LAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAK 204
             LAPLVPRLSELLGI+VVKADDCIGPEVE LVASLPEGGVLLLENVRFYKEEEKN+P+FAK
Sbjct:   149 LAPLVPRLSELLGIEVVKADDCIGPEVETLVASLPEGGVLLLENVRFYKEEEKNEPDFAK 208

Query:   205 KLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAA 264
             KLASLADLYVNDAFGTAHRAHASTEGVTK+LKPSVAGFLLQKELDYLVGAVS+PKRPFAA
Sbjct:   209 KLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPKRPFAA 268

Query:   265 IVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEXXXXXXXXXXX 324
             IVGGSKVSSKIGVIESLLE CDILLLGGGMIFTFYKAQG+SVGSSLVEE           
Sbjct:   269 IVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATTLLA 328

Query:   325 XXXXXGVNLLLPSDVVIADKFAPDANSKV 353
                  GV+LLLP+DVVIADKFAPDANSK+
Sbjct:   329 KAKARGVSLLLPTDVVIADKFAPDANSKI 357
GO:0004618 "phosphoglycerate kinase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006096 "glycolysis" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0009579 "thylakoid" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0070838 "divalent metal ion transport" evidence=RCA
TAIR|locus:2087750 PGK1 "phosphoglycerate kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206410 PGK "phosphoglycerate kinase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0281 CHY_0281 "phosphoglycerate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5367 BA_5367 "phosphoglycerate kinase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0744 DET_0744 "phosphoglycerate kinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1589 CJE_1589 "phosphoglycerate kinase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|F1NU17 PGK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2235 SPO_2235 "phosphoglycerate kinase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0287595 pgkA "calmodulin-binding protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B0JT86PGK_MICAN2, ., 7, ., 2, ., 30.66080.78880.7064yesno
A8G2K1PGK_PROM22, ., 7, ., 2, ., 30.67240.80270.7189yesno
P12782PGKH_WHEAT2, ., 7, ., 2, ., 30.79270.98330.7375N/Ano
P12783PGKY_WHEAT2, ., 7, ., 2, ., 30.82330.78610.7057N/Ano
B2ITU1PGK_NOSP72, ., 7, ., 2, ., 30.70030.76940.6925yesno
Q7U3V0PGK_SYNPX2, ., 7, ., 2, ., 30.69120.78880.7064yesno
B8HXQ5PGK_CYAP42, ., 7, ., 2, ., 30.69700.74440.6600yesno
Q9SBN4PGKH_VOLCA2, ., 7, ., 2, ., 30.71340.89720.6991N/Ano
Q3AFD1PGK_CARHZ2, ., 7, ., 2, ., 30.60340.79160.7233yesno
Q8YPR1PGK_NOSS12, ., 7, ., 2, ., 30.70580.80270.7225yesno
A2BUH2PGK_PROM52, ., 7, ., 2, ., 30.65170.80270.7189yesno
C5D7M4PGK_GEOSW2, ., 7, ., 2, ., 30.58620.78880.7208yesno
Q5N4Z6PGK_SYNP62, ., 7, ., 2, ., 30.66890.80270.7189yesno
Q8KAE1PGK_CHLTE2, ., 7, ., 2, ., 30.58590.78050.7078yesno
A2CDG7PGK_PROM32, ., 7, ., 2, ., 30.65860.80270.7206yesno
Q10Z46PGK_TRIEI2, ., 7, ., 2, ., 30.67930.80.7236yesno
A2C025PGK_PROM12, ., 7, ., 2, ., 30.64910.78880.7082yesno
Q8R965PGK_THETN2, ., 7, ., 2, ., 30.63130.74720.6827yesno
A5GW73PGK_SYNR32, ., 7, ., 2, ., 30.67580.80270.7189yesno
P29409PGKH_SPIOL2, ., 7, ., 2, ., 30.88060.85270.7090N/Ano
Q2JKX6PGK_SYNJB2, ., 7, ., 2, ., 30.64110.80270.7014yesno
B7K9Q5PGK_CYAP72, ., 7, ., 2, ., 30.68300.78610.7057yesno
Q8DGP7PGK_THEEB2, ., 7, ., 2, ., 30.67600.78880.71yesno
Q3AGU1PGK_SYNSC2, ., 7, ., 2, ., 30.67580.80270.7206yesno
Q7VDZ4PGK_PROMA2, ., 7, ., 2, ., 30.67930.80270.7189yesno
Q46HH8PGK_PROMT2, ., 7, ., 2, ., 30.64210.78880.7082yesno
Q42961PGKH_TOBAC2, ., 7, ., 2, ., 30.82360.9750.7297N/Ano
Q42962PGKY_TOBAC2, ., 7, ., 2, ., 30.84800.78610.7057N/Ano
B7JVE4PGK_CYAP82, ., 7, ., 2, ., 30.66090.80550.725yesno
Q3AVX6PGK_SYNS92, ., 7, ., 2, ., 30.68420.78880.7082yesno
A3PAR3PGK_PROM02, ., 7, ., 2, ., 30.65860.80270.7189yesno
A5GPB2PGK_SYNPW2, ., 7, ., 2, ., 30.69120.78880.7064yesno
Q31CY6PGK_PROM92, ., 7, ., 2, ., 30.67580.80270.7189yesno
B8E2D3PGK_DICTD2, ., 7, ., 2, ., 30.58410.80270.7297yesno
Q31P73PGK_SYNE72, ., 7, ., 2, ., 30.67240.80270.7189yesno
B0CD95PGK_ACAM12, ., 7, ., 2, ., 30.69590.75550.6783yesno
B1XNQ1PGK_SYNP22, ., 7, ., 2, ., 30.65510.79440.7185yesno
Q2JXF0PGK_SYNJA2, ., 7, ., 2, ., 30.64780.80270.7014yesno
Q7V390PGK_PROMP2, ., 7, ., 2, ., 30.65510.80270.7189yesno
B3QLX7PGK_CHLP82, ., 7, ., 2, ., 30.57540.78050.7078yesno
P41758PGKH_CHLRE2, ., 7, ., 2, ., 30.73350.79720.6225N/Ano
Q3ANU2PGK_CHLCH2, ., 7, ., 2, ., 30.56990.78330.7103yesno
A9BDF8PGK_PROM42, ., 7, ., 2, ., 30.65860.80270.7189yesno
P50318PGKH2_ARATH2, ., 7, ., 2, ., 30.83670.94440.7112yesno
A2BNZ0PGK_PROMS2, ., 7, ., 2, ., 30.66890.80270.7189yesno
Q3MF40PGK_ANAVT2, ., 7, ., 2, ., 30.70930.80270.7225yesno
Q0I6M5PGK_SYNS32, ., 7, ., 2, ., 30.68770.78880.7064yesno
Q7V461PGK_PROMM2, ., 7, ., 2, ., 30.65860.80270.7206yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.2.30.991
3rd Layer2.7.20.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
PLN03034 481 PLN03034, PLN03034, phosphoglycerate kinase; Provi 0.0
PLN02282 401 PLN02282, PLN02282, phosphoglycerate kinase 1e-176
PRK00073 389 PRK00073, pgk, phosphoglycerate kinase; Provisiona 1e-169
pfam00162383 pfam00162, PGK, Phosphoglycerate kinase 1e-162
cd00318 397 cd00318, Phosphoglycerate_kinase, Phosphoglycerate 1e-149
PRK13962 645 PRK13962, PRK13962, bifunctional phosphoglycerate 1e-144
COG0126 395 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydr 1e-143
PTZ00005 417 PTZ00005, PTZ00005, phosphoglycerate kinase; Provi 1e-107
>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional Back     alignment and domain information 
 Score =  610 bits (1574), Expect = 0.0
 Identities = 307/360 (85%), Positives = 333/360 (92%), Gaps = 7/360 (1%)

Query: 1   MASATAPTTLSLVK-TAASSSLSSPRASFL-----RMPTSASRRLGFSAA-DPLLTCHVA 53
           MASA APT LSL+K TAA++S ++ RAS L      +  ++ RRLGFSAA D   + HVA
Sbjct: 1   MASAAAPTALSLLKSTAAAASTAASRASLLPVPSTGLSATSLRRLGFSAAADSRFSVHVA 60

Query: 54  SRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAA 113
           S++ S + KG+R VVSMAKKSVG+L+ ADLKGKKVFVRADLNVPLDDNQNITDDTRIRAA
Sbjct: 61  SKVRSFRGKGSRGVVSMAKKSVGDLTSADLKGKKVFVRADLNVPLDDNQNITDDTRIRAA 120

Query: 114 VPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK 173
           +PTIK+LI NGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK
Sbjct: 121 IPTIKYLISNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK 180

Query: 174 LVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233
           LVASLPEGGVLLLENVRFYKEEEKN+PEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK
Sbjct: 181 LVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 240

Query: 234 YLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGG 293
           +LKPSVAGFLLQKELDYLVGAVS+PKRPFAAIVGGSKVSSKIGVIESLLE CDILLLGGG
Sbjct: 241 FLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGG 300

Query: 294 MIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV 353
           MIFTFYKAQG+SVGSSLVEEDKL+LAT+LLAKAKAKGV+LLLP+DVVIADKFAPDANSK+
Sbjct: 301 MIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKI 360

Length = 481
>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase Back     alignment and domain information
>gnl|CDD|234613 PRK00073, pgk, phosphoglycerate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase Back     alignment and domain information
>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate Back     alignment and domain information
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|223204 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 360
PLN03034 481 phosphoglycerate kinase; Provisional 100.0
PLN02282 401 phosphoglycerate kinase 100.0
PRK00073 389 pgk phosphoglycerate kinase; Provisional 100.0
COG0126 395 Pgk 3-phosphoglycerate kinase [Carbohydrate transp 100.0
cd00318 397 Phosphoglycerate_kinase Phosphoglycerate kinase (P 100.0
PF00162384 PGK: Phosphoglycerate kinase; InterPro: IPR001576 100.0
PRK13962 645 bifunctional phosphoglycerate kinase/triosephospha 100.0
PTZ00005 417 phosphoglycerate kinase; Provisional 100.0
KOG1367 416 consensus 3-phosphoglycerate kinase [Carbohydrate 100.0
TIGR01663526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 90.29
TIGR03590279 PseG pseudaminic acid biosynthesis-associated prot 89.66
PRK05826 465 pyruvate kinase; Provisional 80.57
>PLN03034 phosphoglycerate kinase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.8e-111  Score=850.83  Aligned_cols=357  Identities=84%  Similarity=1.180  Sum_probs=318.8

Q ss_pred             CCCCCCcccccccccccccc--------ccCCCcccccCCcchhhccccC-cCCchhhhhhhhhhhccccccchhhhhcc
Q 018105            1 MASATAPTTLSLVKTAASSS--------LSSPRASFLRMPTSASRRLGFS-AADPLLTCHVASRLSSIKTKGTRAVVSMA   71 (360)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (360)
                      |+++++|+.+++...++.+.        ..+.++..++..+++.+  +++ ++|+..+.+.+.++++......+....|.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~   78 (481)
T PLN03034          1 MASAAAPTALSLLKSTAAAASTAASRASLLPVPSTGLSATSLRRL--GFSAAADSRFSVHVASKVRSFRGKGSRGVVSMA   78 (481)
T ss_pred             CccccccchhhhhhhhhhhhhhccccccccccccccccccCcccc--chhcccCccchhhhhhhhccchhcCcchhhhcc
Confidence            78888888888764443221        11122333333444444  554 57899999998888777333333333566


Q ss_pred             cccccCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHH
Q 018105           72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPR  151 (360)
Q Consensus        72 ~~~i~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~  151 (360)
                      +++++|+++.|++|||||||||||||++++|+|+||+||++++|||+||+++||||||+||||||+|.++++||+|||++
T Consensus        79 ~~tl~d~~~~dl~GK~VlvRvD~NvPi~~~g~I~Dd~RI~a~lpTI~~L~~~gakvVl~SHlGRPkg~~~~~SL~pva~~  158 (481)
T PLN03034         79 KKSVGDLTSADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLISNGAKVILSSHLGRPKGVTPKFSLAPLVPR  158 (481)
T ss_pred             cCcHhhcchhhcCCCEEEEEeccCCCcCCCCcccChHhHHHHHHHHHHHHHCCCeEEEEEecCCCCCCCcccCHHHHHHH
Confidence            77888888789999999999999999976689999999999999999999999999999999999987789999999999


Q ss_pred             HHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcchhcc
Q 018105          152 LSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGV  231 (360)
Q Consensus       152 Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi  231 (360)
                      |+++||++|.|++||+|++++++|++|++|||+||||+|||+||++||++|+++||+++|+|||||||++||+|||++||
T Consensus       159 Ls~lL~~~V~fv~d~~G~~~~~~i~~l~~GeVlLLENvRF~~eE~~nd~~fa~~LA~l~DiyVNDAFgtaHR~haS~vGi  238 (481)
T PLN03034        159 LSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGV  238 (481)
T ss_pred             HHHHhCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcccccCcHHHHHHHHhhCCEEEecchhhhHhcccchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccc
Q 018105          232 TKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLV  311 (360)
Q Consensus       232 ~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~Slv  311 (360)
                      ++|++|+|+|+||||||++|.+++++|+||+++|+||+||||||++|+||++|||+||+||+|+||||+|+|++||+|++
T Consensus       239 ~~~l~ps~aG~LmekEl~~L~k~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~slv  318 (481)
T PLN03034        239 TKFLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLV  318 (481)
T ss_pred             hhhcCcchhhHHHHHHHHHHHHHHcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcchhhc
Confidence            99998899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCCC
Q 018105          312 EEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSY  359 (360)
Q Consensus       312 E~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~~  359 (360)
                      |++.++.|++||++++++|++|+||+||+|+++|+.+++.+++++++|
T Consensus       319 E~d~i~~A~~il~~a~~~gv~I~lPvD~v~a~~~~~~~~~~~~~~~~I  366 (481)
T PLN03034        319 EEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAI  366 (481)
T ss_pred             ChhhhHHHHHHHHHHHhcCCEEECCceEEEecccCCCCCeEEeehhcC
Confidence            999999999999999999999999999999999998887777766554

>PLN02282 phosphoglycerate kinase Back     alignment and domain information
>PRK00073 pgk phosphoglycerate kinase; Provisional Back     alignment and domain information
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate Back     alignment and domain information
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2 Back     alignment and domain information
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional Back     alignment and domain information
>PTZ00005 phosphoglycerate kinase; Provisional Back     alignment and domain information
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG Back     alignment and domain information
>PRK05826 pyruvate kinase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
1php_A 394 Structure Of The Adp Complex Of The 3-Phosphoglycer 3e-84
1vpe_A 398 Crystallographic Analysis Of Phosphoglycerate Kinas 2e-77
3uwd_A 394 Crystal Structure Of Phosphoglycerate Kinase From B 9e-74
3q3v_A 403 Crystal Structure Of Phosphoglycerate Kinase From C 6e-67
2p9q_A 416 Crystal Structure Of Phosphoglycerate Kinase-2 Leng 2e-63
2zgv_A 420 Crystal Structure Of Human Phosphoglycerate Kinase 4e-63
2xe6_A 417 The Complete Reaction Cycle Of Human Phosphoglycera 5e-63
2y3i_A 416 The Structure Of The Fully Closed Conformation Of H 5e-63
1vjc_A 416 Structure Of Pig Muscle Pgk Complexed With Mgatp Le 5e-63
2wzb_A 416 The Catalytically Active Fully Closed Conformation 6e-63
2wzd_A 417 The Catalytically Active Fully Closed Conformation 2e-62
2x14_A 416 The Catalytically Active Fully Closed Conformation 2e-62
1qpg_A 415 3-Phosphoglycerate Kinase, Mutation R65q Length = 4 8e-62
3pgk_A 416 The Structure Of Yeast Phosphoglycerate Kinase At 0 1e-61
1kf0_A 416 Crystal Structure Of Pig Muscle Phosphoglycerate Ki 4e-61
1v6s_A 390 Crystal Structure Of Phosphoglycerate Kinase From T 2e-60
2ie8_A 390 Crystal Structure Of Thermus Caldophilus Phosphogly 3e-60
4dg5_A 403 Crystal Structure Of Staphylococcal Phosphoglycerat 8e-60
3oz7_A 417 Crystal Structure Of 3-Phosphopglycerate Kinase Of 1e-58
1hdi_A 413 Pig Muscle 3-Phosphoglycerate Kinase Complexed With 7e-58
13pk_A 415 Ternary Complex Of Phosphoglycerate Kinase From Try 2e-57
4fey_A 395 An X-Ray Structure Of A Putative Phosphogylcerate K 1e-56
3oza_A 424 Crystal Structure Of Plasmodium Falciparum 3-Phosph 1e-56
1ltk_A 425 Crystal Structure Of Phosphoglycerate Kinase From P 1e-56
4ehj_A 392 An X-Ray Structure Of A Putative Phosphogylcerate K 5e-56
1zmr_A 387 Crystal Structure Of The E. Coli Phosphoglycerate K 6e-54
1fw8_A 416 Circularly Permuted Phosphoglycerate Kinase From Ye 2e-45
2cun_A 410 Crystal Structure Of Phosphoglycerate Kinase From P 3e-36
>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus At 1.65 Angstroms Length = 394 Back     alignment and structure 
Iteration: 1

 Score =  308 bits (789), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 162/290 (55%), Positives = 206/290 (71%), Gaps = 6/290 (2%)
Query: 70  MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVIL 129
           M KK++ ++   D++GK+VF R D NVP++    ITDDTRIRAA+PTI++LI++GAKVIL
Sbjct: 1   MNKKTIRDV---DVRGKRVFCRVDFNVPMEQGA-ITDDTRIRAALPTIRYLIEHGAKVIL 56
Query: 130 SSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
           +SHLGRPKG V  +  L  +  RL ELL   V K ++ +G EV+  V  L EG VLLLEN
Sbjct: 57  ASHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLEN 116
Query: 189 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKEL 248
           VRFY  EEKNDPE AK  A LADLYVNDAFG AHRAHASTEG+  YL P+VAGFL++KEL
Sbjct: 117 VRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKEL 175
Query: 249 DYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGS 308
           + L  A+S+P RPF AI+GG+KV  KIGVI++LLE  D L++GGG+ +TF KA G  VG 
Sbjct: 176 EVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGK 235
Query: 309 SLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSKVCFLNS 358
           SL+EE                GV   +P DVV+AD+FA DAN+KV  +++
Sbjct: 236 SLLEEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDA 285
>pdb|1VPE|A Chain A, Crystallographic Analysis Of Phosphoglycerate Kinase From The Hyperthermophilic Bacterium Thermotoga Maritima Length = 398 Back     alignment and structure
>pdb|3UWD|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Bacillus Anthracis Length = 394 Back     alignment and structure
>pdb|3Q3V|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Campylobacter Jejuni. Length = 403 Back     alignment and structure
>pdb|2P9Q|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Length = 416 Back     alignment and structure
>pdb|2ZGV|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound To D-Adp Length = 420 Back     alignment and structure
>pdb|2XE6|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate Kinase: The Open Binary Complex With 3pg Length = 417 Back     alignment and structure
>pdb|2Y3I|A Chain A, The Structure Of The Fully Closed Conformation Of Human Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium Tetrafluoride Length = 416 Back     alignment and structure
>pdb|1VJC|A Chain A, Structure Of Pig Muscle Pgk Complexed With Mgatp Length = 416 Back     alignment and structure
>pdb|2WZB|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase In Complex With Adp, 3pg And Magnesium Trifluoride Length = 416 Back     alignment and structure
>pdb|2WZD|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase K219a Mutant In Complex With Adp, 3pg And Aluminium Trifluoride Length = 417 Back     alignment and structure
>pdb|2X14|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase K219a Mutant In Complex With Amp-Pcp And 3pg Length = 416 Back     alignment and structure
>pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q Length = 415 Back     alignment and structure
>pdb|3PGK|A Chain A, The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm Resolution Length = 416 Back     alignment and structure
>pdb|1KF0|A Chain A, Crystal Structure Of Pig Muscle Phosphoglycerate Kinase Ternary Complex With Amp-Pcp And 3pg Length = 416 Back     alignment and structure
>pdb|1V6S|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Thermus Thermophilus Hb8 Length = 390 Back     alignment and structure
>pdb|2IE8|A Chain A, Crystal Structure Of Thermus Caldophilus Phosphoglycerate Kinase In The Open Conformation Length = 390 Back     alignment and structure
>pdb|4DG5|A Chain A, Crystal Structure Of Staphylococcal Phosphoglycerate Kinase Length = 403 Back     alignment and structure
>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of Plasmodium Falciparum Length = 417 Back     alignment and structure
>pdb|1HDI|A Chain A, Pig Muscle 3-Phosphoglycerate Kinase Complexed With 3-Pg And Mgadp Length = 413 Back     alignment and structure
>pdb|13PK|A Chain A, Ternary Complex Of Phosphoglycerate Kinase From Trypanosoma Brucei Length = 415 Back     alignment and structure
>pdb|4FEY|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase With Bound Adp From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 395 Back     alignment and structure
>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum 3-Phosphoglycerate Kinase Length = 424 Back     alignment and structure
>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Plasmodium Falciparum, In The Open Conformation Length = 425 Back     alignment and structure
>pdb|4EHJ|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 392 Back     alignment and structure
>pdb|1ZMR|A Chain A, Crystal Structure Of The E. Coli Phosphoglycerate Kinase Length = 387 Back     alignment and structure
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast: Pgk P72 Length = 416 Back     alignment and structure
>pdb|2CUN|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Pyrococcus Horikoshii Ot3 Length = 410 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
3q3v_A 403 Phosphoglycerate kinase; structural genomics, cent 0.0
1php_A 394 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobac 0.0
1vpe_A 398 Phosphoglycerate kinase; transferase, hyperthermos 0.0
1v6s_A 390 Phosphoglycerate kinase; riken structu genomics/pr 0.0
4fey_A 395 Phosphoglycerate kinase; structural genomics, niai 1e-176
16pk_A 415 PGK, 3-phosphoglycerate kinase; ternary complex, g 1e-174
3oz7_A 417 Phosphoglycerate kinase; transferase, ATP binding, 1e-173
1qpg_A 415 PGK, 3-phosphoglycerate kinase; phosphotransferase 1e-171
1zmr_A 387 Phosphoglycerate kinase; transferase, glycolysis; 1e-170
2wzb_A 416 Phosphoglycerate kinase 1; hereditary hemolytic an 1e-167
2cun_A 410 Phosphoglycerate kinase; structural genomics, tanp 1e-166
1fw8_A 416 PGK P72, phosphoglycerate kinase; phosphotransfera 1e-128
1fw8_A416 PGK P72, phosphoglycerate kinase; phosphotransfera 3e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} Length = 403 Back     alignment and structure
 Score =  521 bits (1344), Expect = 0.0
 Identities = 142/288 (49%), Positives = 187/288 (64%), Gaps = 2/288 (0%)

Query: 69  SMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVI 128
           S A   +  +   DL  KKVF+R D NVP DD  NITDD RIR+A+PTI++ + NG  VI
Sbjct: 1   SNAMSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVI 60

Query: 129 LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
           L+SHLGRPK ++ K+SL P+  RL+ LL  ++V A D IG + +    +L  G +LLLEN
Sbjct: 61  LASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLEN 120

Query: 189 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYL--KPSVAGFLLQK 246
           +RF K E KND   AK+LAS+  +Y+NDAFG  HRAH+S E +TK+   K   AGFLLQK
Sbjct: 121 LRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQK 180

Query: 247 ELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISV 306
           E+D+    +  P RPF A+VGGSKVS K+  + +LL   D L++GGGM FTF KA G  +
Sbjct: 181 EIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDI 240

Query: 307 GSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
           G+SL+EE+ L+ A  +L K K  GV + LP DVV A   + D   K  
Sbjct: 241 GNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFV 288
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A* Length = 394 Back     alignment and structure
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1 Length = 398 Back     alignment and structure
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A Length = 390 Back     alignment and structure
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A Length = 395 Back     alignment and structure
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A* Length = 415 Back     alignment and structure
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} PDB: 1ltk_A* 3oza_A Length = 417 Back     alignment and structure
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A* Length = 415 Back     alignment and structure
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} Length = 387 Back     alignment and structure
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ... Length = 416 Back     alignment and structure
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii} Length = 410 Back     alignment and structure
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Length = 416 Back     alignment and structure
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Length = 416 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
1php_A 394 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobac 100.0
3q3v_A 403 Phosphoglycerate kinase; structural genomics, cent 100.0
1v6s_A 390 Phosphoglycerate kinase; riken structu genomics/pr 100.0
1vpe_A 398 Phosphoglycerate kinase; transferase, hyperthermos 100.0
16pk_A 415 PGK, 3-phosphoglycerate kinase; ternary complex, g 100.0
1qpg_A 415 PGK, 3-phosphoglycerate kinase; phosphotransferase 100.0
4fey_A 395 Phosphoglycerate kinase; structural genomics, niai 100.0
3oz7_A 417 Phosphoglycerate kinase; transferase, ATP binding, 100.0
2wzb_A 416 Phosphoglycerate kinase 1; hereditary hemolytic an 100.0
1zmr_A 387 Phosphoglycerate kinase; transferase, glycolysis; 100.0
2cun_A 410 Phosphoglycerate kinase; structural genomics, tanp 100.0
1fw8_A 416 PGK P72, phosphoglycerate kinase; phosphotransfera 100.0
1fw8_A416 PGK P72, phosphoglycerate kinase; phosphotransfera 99.85
3tqq_A314 Methionyl-tRNA formyltransferase; protein synthesi 80.68
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A* Back     alignment and structure
Probab=100.00  E-value=1.8e-110  Score=830.60  Aligned_cols=285  Identities=60%  Similarity=0.959  Sum_probs=275.0

Q ss_pred             cccccccCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCC-CCCCCChhhh
Q 018105           70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPL  148 (360)
Q Consensus        70 ~~~~~i~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg-~~~~~SL~pv  148 (360)
                      |++++|.+   +|++|||||||||||||++ +|+|+||+||++++|||+||+++||||||+||||||+| +++++||+||
T Consensus         1 m~k~ti~d---~dl~gKrVlvRvD~NVPl~-~g~Itdd~RI~aalpTI~~ll~~gakvil~SHlGRPkg~~~~~~SL~pv   76 (394)
T 1php_A            1 MNKKTIRD---VDVRGKRVFCRVDFNVPME-QGAITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAV   76 (394)
T ss_dssp             CCBCBGGG---SCCTTCEEEEECCCCCCEE-TTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHH
T ss_pred             CCCCcccc---cCcCCCEEEEEecCCCccc-CCccCChHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCCccCHHHH
Confidence            44455554   5899999999999999997 48999999999999999999999999999999999998 6899999999


Q ss_pred             HHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcch
Q 018105          149 VPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHAST  228 (360)
Q Consensus       149 a~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~  228 (360)
                      |++|+++||++|.|++||+|++++++|++|++|||+||||+|||+||++||++|+++||+|||+|||||||||||+||||
T Consensus        77 a~~L~~lLg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~  156 (394)
T 1php_A           77 AKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHAST  156 (394)
T ss_dssp             HHHHHHHHTSCCEECSCSSSHHHHHHHHTCCTTCEEECCCGGGSHHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTT
T ss_pred             HHHHHHHHCCCceECCCcCCHHHHHHHhcCCCCeEEEEcccCCCcchhhCCHHHHHHHHhhCCEEEeccccccccccCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCcccc
Q 018105          229 EGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGS  308 (360)
Q Consensus       229 ~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~  308 (360)
                      +||++|+ |+|||+||||||++|++++++|+|||+||+||+||||||++|+||++|||+|||||+||||||+|+|++||+
T Consensus       157 ~gi~~~l-p~~aG~Lm~kEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~  235 (394)
T 1php_A          157 EGIAHYL-PAVAGFLMEKELEVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGK  235 (394)
T ss_dssp             TGGGGTS-CEEECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTT
T ss_pred             hhhhhhh-hhhhcHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeeeCcHHHHHHHHHcCCCCCc
Confidence            9999999 789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCCC
Q 018105          309 SLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSY  359 (360)
Q Consensus       309 SlvE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~~  359 (360)
                      ||+|+|.++.|++||++|+++|++|+||+|++|+++|+++++++++++++|
T Consensus       236 SL~E~d~~~~a~~ll~~a~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~i  286 (394)
T 1php_A          236 SLLEEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAI  286 (394)
T ss_dssp             SCCCGGGHHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTSCEEEEEGGGC
T ss_pred             cccchhhHHHHHHHHHHHHhcCCEEECCcchhhhhccCCCCceEEeehhcC
Confidence            999999999999999999999999999999999999999999988877654
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} SCOP: c.86.1.0 Back     alignment and structure
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A Back     alignment and structure
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1 Back     alignment and structure
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A* Back     alignment and structure
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A* Back     alignment and structure
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A Back     alignment and structure
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A Back     alignment and structure
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ... Back     alignment and structure
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} Back     alignment and structure
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii} Back     alignment and structure
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Back     alignment and structure
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Back     alignment and structure
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 360
d1phpa_ 394 c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus st 1e-96
d1qpga_ 415 c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yea 8e-80
d1ltka_ 417 c.86.1.1 (A:) Phosphoglycerate kinase {Malaria par 3e-78
d1hdia_ 413 c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus sc 1e-77
d1vpea_ 398 c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga 4e-77
d1v6sa_ 390 c.86.1.1 (A:) Phosphoglycerate kinase {Thermus the 4e-74
d16pka_ 415 c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma 6e-67
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 394 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  290 bits (743), Expect = 1e-96
 Identities = 170/286 (59%), Positives = 215/286 (75%), Gaps = 6/286 (2%)

Query: 70  MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVIL 129
           M KK++ ++   D++GK+VF R D NVP++    ITDDTRIRAA+PTI++LI++GAKVIL
Sbjct: 1   MNKKTIRDV---DVRGKRVFCRVDFNVPMEQGA-ITDDTRIRAALPTIRYLIEHGAKVIL 56

Query: 130 SSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
           +SHLGRPKG V  +  L  +  RL ELL   V K ++ +G EV+  V  L EG VLLLEN
Sbjct: 57  ASHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLEN 116

Query: 189 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKEL 248
           VRFY  EEKNDPE AK  A LADLYVNDAFG AHRAHASTEG+  YL P+VAGFL++KEL
Sbjct: 117 VRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKEL 175

Query: 249 DYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGS 308
           + L  A+S+P RPF AI+GG+KV  KIGVI++LLE  D L++GGG+ +TF KA G  VG 
Sbjct: 176 EVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGK 235

Query: 309 SLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
           SL+EEDK++LA + + KAK KGV   +P DVV+AD+FA DAN+KV 
Sbjct: 236 SLLEEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVV 281
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 415 Back     information, alignment and structure
>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 417 Back     information, alignment and structure
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} Length = 398 Back     information, alignment and structure
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]} Length = 390 Back     information, alignment and structure
>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]} Length = 415 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
d1v6sa_ 390 Phosphoglycerate kinase {Thermus thermophilus [Tax 100.0
d1phpa_ 394 Phosphoglycerate kinase {Bacillus stearothermophil 100.0
d1vpea_ 398 Phosphoglycerate kinase {Thermotoga maritima [TaxI 100.0
d1qpga_ 415 Phosphoglycerate kinase {Baker's yeast (Saccharomy 100.0
d16pka_ 415 Phosphoglycerate kinase {Trypanosoma brucei [TaxId 100.0
d1hdia_ 413 Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 100.0
d1ltka_ 417 Phosphoglycerate kinase {Malaria parasite (Plasmod 100.0
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.1e-99  Score=751.67  Aligned_cols=283  Identities=49%  Similarity=0.749  Sum_probs=274.8

Q ss_pred             ccCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHH
Q 018105           75 VGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSE  154 (360)
Q Consensus        75 i~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~  154 (360)
                      +++|+|+|++|||||||||||||++ +|+|+||+||++++|||+||+++||||||+||||||+|+++++||+||+++|++
T Consensus         1 mktl~d~~~~~k~Vl~R~D~NvPi~-~g~i~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~Sl~~v~~~l~~   79 (390)
T d1v6sa_           1 MRTLLDLDPKGKRVLVRVDYNVPVQ-DGKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRA   79 (390)
T ss_dssp             CCBGGGSCCTTCEEEEECCCCCCEE-TTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHHH
T ss_pred             CCchhhcCCCCCEEEEEeccCCCcc-CCeECChHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCcccHHHHHHHHHh
Confidence            3566777999999999999999997 589999999999999999999999999999999999998889999999999999


Q ss_pred             HhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcchhccccc
Q 018105          155 LLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKY  234 (360)
Q Consensus       155 lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi~~~  234 (360)
                      +|+++|.|++||+|+.+.++++.|++|||+||||+|||+||++||++|+++||++||+|||||||||||+|||++|+++|
T Consensus        80 ~l~~~v~~~~~~~~~~~~~~~~~l~~g~i~lLENvRF~~~E~~nd~~f~~~La~l~DiyVNDAF~~aHR~haS~vgi~~~  159 (390)
T d1v6sa_          80 HLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARL  159 (390)
T ss_dssp             HCTTEEECCSCTTSHHHHHHHHTCCTTCEEECSCGGGSTTTTTTCHHHHHHHGGGCSEEEECCGGGTTSCCCCCCCGGGT
T ss_pred             hcccceeeeeccccccccccccccccccEEeehhhhhcccccccchHHHHhhhhcCceEEecchhhhhhhccccccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCcccccccccc
Q 018105          235 LKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEED  314 (360)
Q Consensus       235 l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~SlvE~d  314 (360)
                      + |+|+|+|||+|+++|.+++++|+||+++|+||+||||||++|++|+++||+|++||+||||||+|+|++||+|++|++
T Consensus       160 l-ps~aG~l~ekEi~~L~~~l~~~~rP~vaIlGGaKvsdKi~~i~~l~~k~D~iiigG~mAntFL~a~G~~IG~sl~e~~  238 (390)
T d1v6sa_         160 L-PAYAGFLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEED  238 (390)
T ss_dssp             S-CEEECHHHHHHHHHHHTTTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGG
T ss_pred             h-hhhhHHHHHHHHHHHHHHHhhccCceEEEEecccccchHHHHHHHHHhcceeeecccHHHHHHHHcCCccCcchhhhh
Confidence            8 689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCCC
Q 018105          315 KLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSY  359 (360)
Q Consensus       315 ~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~~  359 (360)
                      .++.++++++++++++++|++|+|++|+.+++.+.....++++++
T Consensus       239 ~~~~~~~~~~~a~~~~~~i~lp~dv~~~~~~~~~~~~~~~~~~~i  283 (390)
T d1v6sa_         239 RLDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAI  283 (390)
T ss_dssp             GHHHHHHHHHHHHHHTCEEECCSEEEEESSCCTTCCCEEEETTBC
T ss_pred             hhhhhHhHHHhhhhhccccccccceeecccccCCccccccchhhh
Confidence            999999999999999999999999999999999988888877765
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure