Citrus Sinensis ID: 018109
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | 2.2.26 [Sep-21-2011] | |||||||
| P55229 | 522 | Glucose-1-phosphate adeny | yes | no | 0.986 | 0.680 | 0.839 | 0.0 | |
| P55243 | 483 | Glucose-1-phosphate adeny | N/A | no | 0.988 | 0.737 | 0.823 | 1e-176 | |
| P55230 | 518 | Glucose-1-phosphate adeny | no | no | 0.986 | 0.685 | 0.676 | 1e-150 | |
| P55233 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.986 | 0.680 | 0.661 | 1e-148 | |
| Q00081 | 470 | Glucose-1-phosphate adeny | N/A | no | 0.986 | 0.755 | 0.659 | 1e-144 | |
| P55242 | 519 | Glucose-1-phosphate adeny | N/A | no | 0.983 | 0.682 | 0.647 | 1e-142 | |
| Q9SIK1 | 523 | Probable glucose-1-phosph | no | no | 0.977 | 0.673 | 0.639 | 1e-139 | |
| P12298 | 301 | Glucose-1-phosphate adeny | N/A | no | 0.833 | 0.996 | 0.755 | 1e-138 | |
| P55231 | 521 | Glucose-1-phosphate adeny | no | no | 0.986 | 0.681 | 0.622 | 1e-137 | |
| P12299 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.983 | 0.678 | 0.584 | 1e-127 |
| >sp|P55229|GLGL1_ARATH Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/355 (83%), Positives = 334/355 (94%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAATQTPGE+GKRWFQGTADAVRQFHWLFED R+K IEDVLILSGDHLYRMDYMD
Sbjct: 168 GYVEVLAATQTPGESGKRWFQGTADAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYMD 227
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
F+Q+HRQSGADI+ISC+P+DD RASDFGLMKI+++GRV+SFSEKPKG DLKAMAVDTT+L
Sbjct: 228 FIQDHRQSGADISISCIPIDDRRASDFGLMKIDDKGRVISFSEKPKGDDLKAMAVDTTIL 287
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLSK+EAE+KPYIASMGVY+FKKEILLNLLRWRFPTANDFGSEIIP SA E ++ AYLFN
Sbjct: 288 GLSKEEAEKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIPFSAKEFYVNAYLFN 347
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGTIRSFFEANLALT HP FSFYDA KPIYTSRRNLPPSKID+SK++DSIISHG
Sbjct: 348 DYWEDIGTIRSFFEANLALTEHPGAFSFYDAAKPIYTSRRNLPPSKIDNSKLIDSIISHG 407
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
SF+T+ IEHS+VGIRSR+ +NV LKDT+MLGAD+YET+AEVA+LLAEG VP+GIGENTK
Sbjct: 408 SFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLGADYYETEAEVAALLAEGNVPIGIGENTK 467
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
I+ECIIDKNAR+GKNVIIANSEGIQEADRS++GFYIRSG+TVILKNSVI DG VI
Sbjct: 468 IQECIIDKNARVGKNVIIANSEGIQEADRSSDGFYIRSGITVILKNSVIKDGVVI 522
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2EC: 7 |
| >sp|P55243|GLGL3_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 616 bits (1588), Expect = e-176, Method: Compositional matrix adjust.
Identities = 294/357 (82%), Positives = 326/357 (91%), Gaps = 1/357 (0%)
Query: 5 TGNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYM 64
+G +VLAATQTPGE GKRWFQGTA AVRQFHWLFED R+K IEDVLILSGDHLYRMDY+
Sbjct: 127 SGYVEVLAATQTPGELGKRWFQGTAHAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYL 186
Query: 65 DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTV 124
FVQ+HRQSGADITIS LP+DDSRASDFGLMKI++ GRV+SFSEKPKG DLKAMAVDTTV
Sbjct: 187 HFVQSHRQSGADITISSLPIDDSRASDFGLMKIDDTGRVMSFSEKPKGDDLKAMAVDTTV 246
Query: 125 LGLSKQEAEEKPYIASMG-VYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYL 183
LGLS +EA+EKPYIAS+G VY+FKK+ILLNLLRWRFPTANDFGSEIIPAS E +KAYL
Sbjct: 247 LGLSPEEAKEKPYIASIGKVYVFKKDILLNLLRWRFPTANDFGSEIIPASTKEFCVKAYL 306
Query: 184 FNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIIS 243
FNDYWEDIGTIRSFF ANLALT HPP FSFYDATKPIYTSRRNLPPS ID+SKIVDSI+S
Sbjct: 307 FNDYWEDIGTIRSFFRANLALTEHPPRFSFYDATKPIYTSRRNLPPSAIDNSKIVDSIVS 366
Query: 244 HGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 303
HG F+T+ F+EHSVVGIRSRI NVHLKDT+MLGAD+YETDAE+ S LAEG+VP+GIGEN
Sbjct: 367 HGIFLTNCFVEHSVVGIRSRIGTNVHLKDTVMLGADYYETDAEIRSQLAEGKVPLGIGEN 426
Query: 304 TKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
T+IK+CIIDKNARIGKNV+IANSEG+QEADRS+EGFY+ SG+TVI KNS I DG VI
Sbjct: 427 TRIKDCIIDKNARIGKNVVIANSEGVQEADRSSEGFYMASGITVISKNSTIPDGTVI 483
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 530 bits (1366), Expect = e-150, Method: Compositional matrix adjust.
Identities = 240/355 (67%), Positives = 298/355 (83%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAATQT G+AGK+WFQGTADAVRQF W+FED + K +E VLILSGDHLYRMDYM+
Sbjct: 164 GFVEVLAATQTSGDAGKKWFQGTADAVRQFIWVFEDAKTKNVEHVLILSGDHLYRMDYMN 223
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQ H +S ADIT+SCLPMD+SRASDFGL+KI+ G+++ FSEKPKG DLKAM VDT++L
Sbjct: 224 FVQKHIESNADITVSCLPMDESRASDFGLLKIDQSGKIIQFSEKPKGDDLKAMQVDTSIL 283
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GL +EA E PYIASMGVY+F+KE+LL LLR +PT+NDFGSEIIP + E ++A+LFN
Sbjct: 284 GLPPKEAAESPYIASMGVYVFRKEVLLKLLRSSYPTSNDFGSEIIPLAVGEHNVQAFLFN 343
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGTI SFF+ANLALT PP F FYD P +TS R LPP+K+D +I+DSI+SHG
Sbjct: 344 DYWEDIGTIGSFFDANLALTEQPPKFQFYDQKTPFFTSPRFLPPTKVDKCRILDSIVSHG 403
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
F+ ++HS+VGIRSR+ + V L+DTMM+GADFY+T+AE+ASLLAEG+VPVG+G+NTK
Sbjct: 404 CFLRECSVQHSIVGIRSRLESGVELQDTMMMGADFYQTEAEIASLLAEGKVPVGVGQNTK 463
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
IK CIIDKNA+IGKNV+IAN++G++E DR EGF+IRSG+TV+LKN+ I DG I
Sbjct: 464 IKNCIIDKNAKIGKNVVIANADGVEEGDRPEEGFHIRSGITVVLKNATIRDGLHI 518
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 525 bits (1351), Expect = e-148, Method: Compositional matrix adjust.
Identities = 235/355 (66%), Positives = 297/355 (83%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +V AATQTPGE+GK+WFQGTADAVRQF W FED ++K +E ++ILSGDHLYRMDYM
Sbjct: 168 GFVEVFAATQTPGESGKKWFQGTADAVRQFFWAFEDSKSKDVEHIVILSGDHLYRMDYMS 227
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
F Q H + ADIT+SC+PMDDSRASD+GLMKI++ GR++ F+EKPKG DL AM VDTTVL
Sbjct: 228 FWQKHIDTNADITVSCIPMDDSRASDYGLMKIDHTGRIVHFAEKPKGSDLTAMQVDTTVL 287
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLS EA PYIASMGVY+F+ ++L+ LL ++P++NDFGSEIIP++ E ++AYLFN
Sbjct: 288 GLSDLEAMSNPYIASMGVYVFRTDVLMELLNRKYPSSNDFGSEIIPSAVGESNVQAYLFN 347
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGTI+SFF++NLALT PP F FYD P YTS R LPP+K+D KIVDSI+SHG
Sbjct: 348 DYWEDIGTIKSFFDSNLALTQQPPKFEFYDPKTPFYTSARFLPPTKVDRCKIVDSIVSHG 407
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
F+ S I+HS+VG+RSR+ + V +DTMM+GAD+Y+T++E+ASLLAEG+VPVG+G+NTK
Sbjct: 408 CFLQESSIQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPVGVGQNTK 467
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
IK CIIDKNA+IGK+V+IAN++G++EADR EGFYIRSG+T+ILKN+ I DG VI
Sbjct: 468 IKNCIIDKNAKIGKDVVIANTDGVEEADRPNEGFYIRSGITIILKNATIQDGLVI 522
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Beta vulgaris (taxid: 161934) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 512 bits (1319), Expect = e-144, Method: Compositional matrix adjust.
Identities = 234/355 (65%), Positives = 296/355 (83%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAATQTPGEAGK+WFQGTADAVR+F W+FED +NK IE++++LSGDHLYRMDYM+
Sbjct: 116 GFVEVLAATQTPGEAGKKWFQGTADAVRKFIWVFEDAKNKNIENIVVLSGDHLYRMDYME 175
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
VQNH ADIT+SC P +DSRASDFGL+KI++ GRV+ F+EKPKG DLKAM VDTT++
Sbjct: 176 LVQNHIDRNADITLSCAPAEDSRASDFGLVKIDSRGRVVQFAEKPKGFDLKAMQVDTTLV 235
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLS Q+A++ PYIASMGVY+FK ++LL LL+W +PT+NDFGSEIIPA+ ++ ++AY+F
Sbjct: 236 GLSPQDAKKSPYIASMGVYVFKTDVLLKLLKWSYPTSNDFGSEIIPAAIDDYNVQAYIFK 295
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGTI+SF+ A+LALT P F FYD P YTS R LPP+KID+ KI D+IISHG
Sbjct: 296 DYWEDIGTIKSFYNASLALTQEFPEFQFYDPKTPFYTSPRFLPPTKIDNCKIKDAIISHG 355
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
F+ +EHS+VG RSR++ V LKDT M+GAD+Y+T++E+ASLLAEG+VP+GIGENTK
Sbjct: 356 CFLRDCSVEHSIVGERSRLDCGVELKDTFMMGADYYQTESEIASLLAEGKVPIGIGENTK 415
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
I++CIIDKNA+IGKNV I N +G+QEADR EGFYIRSG+ +IL+ + I DG VI
Sbjct: 416 IRKCIIDKNAKIGKNVSIINKDGVQEADRPEEGFYIRSGIIIILEKATIRDGTVI 470
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55242|GLGL2_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 230/355 (64%), Positives = 291/355 (81%), Gaps = 1/355 (0%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLA TQTPG+ K WFQ ADAVR+F W+FE+ +NK +E ++ILSGDHLYRM+YMD
Sbjct: 166 GFVEVLAGTQTPGDGRKMWFQA-ADAVREFIWVFENQKNKNVEHIIILSGDHLYRMNYMD 224
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQ H + ADIT+SC+PMDD RASDFGLMKI+ G ++ F+EKPKG LKAM VDT++L
Sbjct: 225 FVQKHIDTNADITVSCVPMDDGRASDFGLMKIDETGAIIQFAEKPKGPALKAMQVDTSIL 284
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLS+QEA PYIASMGVY+FK ++LLNLL+ +P+ NDFGSEIIP++ + ++AYLFN
Sbjct: 285 GLSEQEASNFPYIASMGVYVFKTDVLLNLLKSAYPSCNDFGSEIIPSAVKDHNVQAYLFN 344
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGT++SFF+ANLALT PP F F D P YTS R LPP+K+D S+IVD+IISHG
Sbjct: 345 DYWEDIGTVKSFFDANLALTKQPPKFDFNDPKTPFYTSARFLPPTKVDKSRIVDAIISHG 404
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
F+ I+HS+VG+RSR++ V KDTMM+GAD+Y+T+ E+ASLLAEG+VP+G+G NTK
Sbjct: 405 CFLRECNIQHSIVGVRSRLDYGVEFKDTMMMGADYYQTECEIASLLAEGKVPIGVGPNTK 464
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
I+ CIIDKNA+IGK+V+I N EG++EADRSAEGFYIRSG+TVI+KN+ I DG VI
Sbjct: 465 IQNCIIDKNAKIGKDVVILNKEGVEEADRSAEGFYIRSGITVIMKNATIKDGTVI 519
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q9SIK1|GLGL4_ARATH Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 493 bits (1270), Expect = e-139, Method: Compositional matrix adjust.
Identities = 225/352 (63%), Positives = 288/352 (81%)
Query: 9 QVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQ 68
+VLAATQTPGEAGK+WFQGTADAVR+F W+FED +N+ IE++LILSGDHLYRM+YMDFVQ
Sbjct: 172 EVLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENILILSGDHLYRMNYMDFVQ 231
Query: 69 NHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLS 128
+H S ADIT+SC P+ +SRAS+FGL+KI+ GRV+ FSEKP G DLK+M DTT+LGLS
Sbjct: 232 SHVDSNADITLSCAPVSESRASNFGLVKIDRGGRVIHFSEKPTGVDLKSMQTDTTMLGLS 291
Query: 129 KQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYW 188
QEA + PYIASMGVY FK E LLNLL ++P++NDFGSE+IPA+ + ++ Y+F DYW
Sbjct: 292 HQEATDSPYIASMGVYCFKTEALLNLLTRQYPSSNDFGSEVIPAAIRDHDVQGYIFRDYW 351
Query: 189 EDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFI 248
EDIGTI++F+EANLAL P F FYD P YTS R LPP+K + ++VDSIISHG F+
Sbjct: 352 EDIGTIKTFYEANLALVEERPKFEFYDPETPFYTSPRFLPPTKAEKCRMVDSIISHGCFL 411
Query: 249 TSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE 308
++ S++G RSR++ V L+DT+MLGAD+Y+T++E+ASLLAEG+VP+GIG++TKI++
Sbjct: 412 RECSVQRSIIGERSRLDYGVELQDTLMLGADYYQTESEIASLLAEGKVPIGIGKDTKIRK 471
Query: 309 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
CIIDKNA+IGKNVII N +QEADR EGFYIRSG+TVI++ + I DG VI
Sbjct: 472 CIIDKNAKIGKNVIIMNKGDVQEADRPEEGFYIRSGITVIVEKATIQDGTVI 523
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P12298|GLGL1_WHEAT Glucose-1-phosphate adenylyltransferase large subunit (Fragment) OS=Triticum aestivum GN=AGA.1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust.
Identities = 235/311 (75%), Positives = 264/311 (84%), Gaps = 11/311 (3%)
Query: 50 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEK 109
VLILSGDHLYRMDYMDFVQ+HRQ A I+I CLP+D SRASDFGLMKI++ GRV+SFSEK
Sbjct: 2 VLILSGDHLYRMDYMDFVQSHRQRDAGISICCLPIDGSRASDFGLMKIDDTGRVISFSEK 61
Query: 110 PKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEI 169
P+G DLK M +EAE+KPYIASMGVY+FKKEILLNLLRWRFPTANDFGSEI
Sbjct: 62 PRGADLKEM-----------EEAEKKPYIASMGVYIFKKEILLNLLRWRFPTANDFGSEI 110
Query: 170 IPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 229
IPA+A E +KAYLFNDYWEDIGTI+SFFEANLAL P FSFYDA+KP+YTSRRNLPP
Sbjct: 111 IPAAAREINVKAYLFNDYWEDIGTIKSFFEANLALAEQPSKFSFYDASKPMYTSRRNLPP 170
Query: 230 SKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVAS 289
S I SKI DSIISHG F+ +EHSVVGIRSRI +NVHLKDT+MLGADFYETD E
Sbjct: 171 SMISGSKITDSIISHGCFLDKCRVEHSVVGIRSRIGSNVHLKDTVMLGADFYETDMERGD 230
Query: 290 LLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVIL 349
LAEG+VP+GIGENT I+ CIIDKNARIGKNV IAN+EG+QEADR++EGF+IRSG+TV+L
Sbjct: 231 QLAEGKVPIGIGENTSIQNCIIDKNARIGKNVTIANAEGVQEADRASEGFHIRSGITVVL 290
Query: 350 KNSVITDGFVI 360
KNSVI DG VI
Sbjct: 291 KNSVIADGLVI 301
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55231|GLGL3_ARATH Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 487 bits (1254), Expect = e-137, Method: Compositional matrix adjust.
Identities = 221/355 (62%), Positives = 286/355 (80%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAATQTPGEAGK+WFQGTADAVR+F W+FED +N+ IE+++ILSGDHLYRM+YMD
Sbjct: 167 GFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMD 226
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQ+H S ADIT+SC P+D+SRAS++GL+ I+ GRV+ FSEKP G DLK+M DTT+
Sbjct: 227 FVQHHVDSKADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMH 286
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLS QEA + PYIASMGVY FK E LL LL WR+P++NDFGSEIIPA+ + ++ Y++
Sbjct: 287 GLSHQEAAKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYR 346
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGTI+SF+EAN+AL P F FYD P YTS R LPP+K + +IV+S+ISHG
Sbjct: 347 DYWEDIGTIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHG 406
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
F+ I+ S++G RSR++ V L+DT+MLGAD Y+T++E+ASLLAEG VP+GIG +TK
Sbjct: 407 CFLGECSIQRSIIGERSRLDYGVELQDTLMLGADSYQTESEIASLLAEGNVPIGIGRDTK 466
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
I++CIIDKNA+IGKNV+I N + ++EADR EGFYIRSG+TV+++ + I DG VI
Sbjct: 467 IRKCIIDKNAKIGKNVVIMNKDDVKEADRPEEGFYIRSGITVVVEKATIKDGTVI 521
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P12299|GLGL2_WHEAT Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 453 bits (1166), Expect = e-127, Method: Compositional matrix adjust.
Identities = 208/356 (58%), Positives = 276/356 (77%), Gaps = 2/356 (0%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDP-RNKVIEDVLILSGDHLYRMDYM 64
G+ +VLAATQ PGEA WF+GTADAVR+F W+ ED +NK IE +LILSGD LYRMDYM
Sbjct: 168 GSVEVLAATQMPGEAAG-WFRGTADAVRKFIWVLEDYYKNKSIEHILILSGDQLYRMDYM 226
Query: 65 DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTV 124
+ VQ H ADIT+SC P+ +SRAS++GL+K ++ GRV+ FSEKPKG DL+AM VDT+
Sbjct: 227 ELVQKHVDDNADITLSCAPVGESRASEYGLVKFDSSGRVVQFSEKPKGDDLEAMKVDTSF 286
Query: 125 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF 184
L + + + PYIASMGVY+FK+++LLNLL+ R+ +DFGSEI+P + ++ ++AY+F
Sbjct: 287 LNFAIDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVF 346
Query: 185 NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISH 244
DYWEDIGTIRSFF+AN+AL PP F FYD P +TS R LPP+K D +I ++IISH
Sbjct: 347 TDYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISH 406
Query: 245 GSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENT 304
G F+ IEHS++G+RSR+N+ LK+ MM+GAD YET+ E++ L++EG+VP+G+GENT
Sbjct: 407 GCFLRECKIEHSIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGENT 466
Query: 305 KIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
KI CIID NARIG++V+I+N EG+QEADR EG+YIRSG+ VI KN+ I DG V+
Sbjct: 467 KISNCIIDMNARIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 522
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | ||||||
| 359807441 | 520 | uncharacterized protein LOC100810451 [Gl | 0.986 | 0.682 | 0.878 | 0.0 | |
| 255552303 | 533 | glucose-1-phosphate adenylyltransferase, | 0.986 | 0.666 | 0.890 | 0.0 | |
| 356563435 | 523 | PREDICTED: glucose-1-phosphate adenylylt | 0.986 | 0.678 | 0.873 | 0.0 | |
| 225432564 | 520 | PREDICTED: glucose-1-phosphate adenylylt | 0.986 | 0.682 | 0.881 | 0.0 | |
| 297737003 | 482 | unnamed protein product [Vitis vinifera] | 0.986 | 0.736 | 0.881 | 0.0 | |
| 13487783 | 525 | ADP-glucose pyrophosphorylase [Cicer ari | 0.986 | 0.676 | 0.884 | 0.0 | |
| 449515371 | 522 | PREDICTED: glucose-1-phosphate adenylylt | 0.986 | 0.680 | 0.861 | 0.0 | |
| 449432718 | 522 | PREDICTED: glucose-1-phosphate adenylylt | 0.986 | 0.680 | 0.861 | 0.0 | |
| 224100249 | 528 | predicted protein [Populus trichocarpa] | 0.986 | 0.672 | 0.873 | 0.0 | |
| 449463124 | 518 | PREDICTED: glucose-1-phosphate adenylylt | 0.986 | 0.685 | 0.859 | 0.0 |
| >gi|359807441|ref|NP_001241391.1| uncharacterized protein LOC100810451 [Glycine max] gi|255639628|gb|ACU20108.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/355 (87%), Positives = 343/355 (96%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAATQTPGEAGK+WFQGTADAVRQFHWLFEDPR+K IEDVLILSGDHLYRMDYMD
Sbjct: 166 GYVEVLAATQTPGEAGKKWFQGTADAVRQFHWLFEDPRSKDIEDVLILSGDHLYRMDYMD 225
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQNHR+SGADIT+SCLPMDDSRASDFGLMKI+N+GRVLSFSEKPKG++LKAM VDTTVL
Sbjct: 226 FVQNHRESGADITLSCLPMDDSRASDFGLMKIDNKGRVLSFSEKPKGEELKAMQVDTTVL 285
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLSK EA++KPYIASMGVY+FKKEILLNLLRWRFPTANDFGSE+IPASA E ++KAYLFN
Sbjct: 286 GLSKDEAQKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEVIPASAREFYMKAYLFN 345
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGTIRSFFEANLALT HPP FSFYDA KP+YTSRRNLPPSKID+SKIVDSIISHG
Sbjct: 346 DYWEDIGTIRSFFEANLALTEHPPRFSFYDAAKPMYTSRRNLPPSKIDNSKIVDSIISHG 405
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
SF+ +SFIEHSVVGIRSRIN+N+HLKDT+MLGAD+YETDAEVA+LLAEGRVP+GIGENTK
Sbjct: 406 SFLNNSFIEHSVVGIRSRINSNIHLKDTVMLGADYYETDAEVAALLAEGRVPIGIGENTK 465
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
IK+CIIDKNARIGKNV+IANSEGIQEADRS+EGFYIRSGVT++LKNSVI DGF+I
Sbjct: 466 IKDCIIDKNARIGKNVVIANSEGIQEADRSSEGFYIRSGVTIVLKNSVIEDGFII 520
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552303|ref|XP_002517196.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] gi|223543831|gb|EEF45359.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/355 (89%), Positives = 340/355 (95%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAATQTPGEAGKRWFQGTADAVRQFHWLFED R+K I+DVL+LSGDHLYRMDYMD
Sbjct: 179 GFVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDARSKDIDDVLVLSGDHLYRMDYMD 238
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQNHRQSGADITISCLPMDDSRASDFGLM I+N+GRVLSFSEKPKG DLKAMAVDTTVL
Sbjct: 239 FVQNHRQSGADITISCLPMDDSRASDFGLMNIDNKGRVLSFSEKPKGADLKAMAVDTTVL 298
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLSK+EAE+KPYIASMGVY+FKKEILLNLLRWRFPTANDFGSEIIPASA E F+KAYLFN
Sbjct: 299 GLSKEEAEKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIPASAKEFFIKAYLFN 358
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGTI+SFF ANLALT HPP FSFYDA KP+YTSRRNLPPSKI++ KIVDSIISHG
Sbjct: 359 DYWEDIGTIQSFFAANLALTEHPPRFSFYDAAKPMYTSRRNLPPSKIENCKIVDSIISHG 418
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
SF+T+SFIEHSVVGIRSRIN+NVHLKDT+MLGADFYETD EVA+LLAEGRVP+GIGENTK
Sbjct: 419 SFLTNSFIEHSVVGIRSRINSNVHLKDTVMLGADFYETDDEVAALLAEGRVPIGIGENTK 478
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
I+ECIIDKNARIGKNV+IANSEGIQEADRS+EGFYIRSGVT+ILKNSVI DGFVI
Sbjct: 479 IRECIIDKNARIGKNVVIANSEGIQEADRSSEGFYIRSGVTIILKNSVIQDGFVI 533
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563435|ref|XP_003549968.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/355 (87%), Positives = 342/355 (96%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAATQTPGEAGK+WFQGTADAVRQFHWLFEDPR+K IEDVLILSGDHLYRMDYMD
Sbjct: 169 GYVEVLAATQTPGEAGKKWFQGTADAVRQFHWLFEDPRSKDIEDVLILSGDHLYRMDYMD 228
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQNHR+SGADIT+SCLPMDDSRASDFGLM+I+N+GR+LSFSEKPKG++LKAM VDTTVL
Sbjct: 229 FVQNHRESGADITLSCLPMDDSRASDFGLMRIDNKGRILSFSEKPKGEELKAMQVDTTVL 288
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLSK EA++KPYIASMGVY+FKKEILLNLLRWRFPTANDFGSE+IPASA E ++KAYLFN
Sbjct: 289 GLSKDEAQKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEVIPASAREFYMKAYLFN 348
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGTIRSFFEANLALT HPP FSFYDA KP+YTSRRNLPPSKID+SKIVDSIISHG
Sbjct: 349 DYWEDIGTIRSFFEANLALTEHPPRFSFYDAAKPMYTSRRNLPPSKIDNSKIVDSIISHG 408
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
SF+ +SFIEHSVVGIRSRIN+NVHLKDT+MLGAD+YETDAEV +LLAEGRVP+GIGENTK
Sbjct: 409 SFLNNSFIEHSVVGIRSRINSNVHLKDTVMLGADYYETDAEVVALLAEGRVPIGIGENTK 468
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
IK+CIIDKNARIGKNV+IANSEGIQEADRS+EGFYIRSGVT++LKNSVI DGF+I
Sbjct: 469 IKDCIIDKNARIGKNVVIANSEGIQEADRSSEGFYIRSGVTIVLKNSVIEDGFII 523
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432564|ref|XP_002281069.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/355 (88%), Positives = 338/355 (95%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G + LAATQTPGEAGKRWFQGTADAVRQFHWLFED R+K IEDVLILSGDHLYRMDYMD
Sbjct: 166 GYVEALAATQTPGEAGKRWFQGTADAVRQFHWLFEDQRSKEIEDVLILSGDHLYRMDYMD 225
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQNHRQSGADITISCLPMDDSRASDFGLMKI+N+GRVL FSEKPKG+DLKAM VDT VL
Sbjct: 226 FVQNHRQSGADITISCLPMDDSRASDFGLMKIDNKGRVLFFSEKPKGEDLKAMEVDTKVL 285
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLS++EAE+KPYIASMGVY+FKKEILLNLLRWRFPTANDFGSEIIPASA E F+KAYLFN
Sbjct: 286 GLSREEAEKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIPASAKEFFIKAYLFN 345
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGTIRSFFEANLALTAHPP FSFYDATKP+YTSRRNLPPSKIDDSKIVDSIISHG
Sbjct: 346 DYWEDIGTIRSFFEANLALTAHPPRFSFYDATKPMYTSRRNLPPSKIDDSKIVDSIISHG 405
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
SF+ + FIEHSVVGIRSR+N+NVHLKDT+MLGAD+YETD+EVASLLAEGRVP+GIGENT+
Sbjct: 406 SFLNNCFIEHSVVGIRSRVNSNVHLKDTVMLGADYYETDSEVASLLAEGRVPIGIGENTR 465
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
IK+CIIDKNARIGKNV+I+NSEGIQEADRS EGFYIRSG+T+ILKN I DGFVI
Sbjct: 466 IKDCIIDKNARIGKNVVISNSEGIQEADRSLEGFYIRSGITIILKNFTIKDGFVI 520
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737003|emb|CBI26204.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/355 (88%), Positives = 338/355 (95%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G + LAATQTPGEAGKRWFQGTADAVRQFHWLFED R+K IEDVLILSGDHLYRMDYMD
Sbjct: 128 GYVEALAATQTPGEAGKRWFQGTADAVRQFHWLFEDQRSKEIEDVLILSGDHLYRMDYMD 187
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQNHRQSGADITISCLPMDDSRASDFGLMKI+N+GRVL FSEKPKG+DLKAM VDT VL
Sbjct: 188 FVQNHRQSGADITISCLPMDDSRASDFGLMKIDNKGRVLFFSEKPKGEDLKAMEVDTKVL 247
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLS++EAE+KPYIASMGVY+FKKEILLNLLRWRFPTANDFGSEIIPASA E F+KAYLFN
Sbjct: 248 GLSREEAEKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIPASAKEFFIKAYLFN 307
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGTIRSFFEANLALTAHPP FSFYDATKP+YTSRRNLPPSKIDDSKIVDSIISHG
Sbjct: 308 DYWEDIGTIRSFFEANLALTAHPPRFSFYDATKPMYTSRRNLPPSKIDDSKIVDSIISHG 367
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
SF+ + FIEHSVVGIRSR+N+NVHLKDT+MLGAD+YETD+EVASLLAEGRVP+GIGENT+
Sbjct: 368 SFLNNCFIEHSVVGIRSRVNSNVHLKDTVMLGADYYETDSEVASLLAEGRVPIGIGENTR 427
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
IK+CIIDKNARIGKNV+I+NSEGIQEADRS EGFYIRSG+T+ILKN I DGFVI
Sbjct: 428 IKDCIIDKNARIGKNVVISNSEGIQEADRSLEGFYIRSGITIILKNFTIKDGFVI 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13487783|gb|AAK27718.1|AF356002_1 ADP-glucose pyrophosphorylase [Cicer arietinum] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/355 (88%), Positives = 337/355 (94%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAATQTPGE GK+WFQGTADAVRQFHWLFED R+K IEDVLILSGDHLYRMDYMD
Sbjct: 171 GYVEVLAATQTPGEQGKKWFQGTADAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYMD 230
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQNHR+SGADIT+SCLPMDDSRASDFGLMKI+N+GRVLSFSEKPKG+DLKAM VDTTVL
Sbjct: 231 FVQNHRESGADITLSCLPMDDSRASDFGLMKIDNKGRVLSFSEKPKGEDLKAMQVDTTVL 290
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLSK EA EKPYIASMGVY+FKKEILLNLLRWRFPTANDFGSEIIPASA E ++KAYLFN
Sbjct: 291 GLSKDEALEKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIPASAREFYMKAYLFN 350
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGTIRSFFEANLALT HP FSFYDA KP+YTSRRNLPPSKID+SKIVDSI+SHG
Sbjct: 351 DYWEDIGTIRSFFEANLALTEHPSKFSFYDAAKPMYTSRRNLPPSKIDNSKIVDSIVSHG 410
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
SF+ +SFIEHSVVGIRSRIN+NVHLKDT+MLGADFYET+AEVA+LLAEGRVP+GIGENTK
Sbjct: 411 SFLNNSFIEHSVVGIRSRINSNVHLKDTVMLGADFYETEAEVAALLAEGRVPIGIGENTK 470
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
IK+CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV+LKNS I DG VI
Sbjct: 471 IKDCIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVVLKNSTIEDGLVI 525
|
Source: Cicer arietinum Species: Cicer arietinum Genus: Cicer Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449515371|ref|XP_004164723.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/355 (86%), Positives = 337/355 (94%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAATQTPGEAGK WFQGTADAVRQFHWLFED R+K IEDVLILSGDHLYRMDYMD
Sbjct: 168 GYVEVLAATQTPGEAGKNWFQGTADAVRQFHWLFEDARSKNIEDVLILSGDHLYRMDYMD 227
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQNHRQSGADIT+SCLPMDDSRASDFGLMKI+ +GR++SFSEKPKG+DLKAMAVDTT+L
Sbjct: 228 FVQNHRQSGADITLSCLPMDDSRASDFGLMKIDEKGRIISFSEKPKGQDLKAMAVDTTIL 287
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLSK+EA++KPYIASMGVY+FKK+ILLNLLRWRFPTANDFGSEIIPASA E F+KAYLFN
Sbjct: 288 GLSKEEAQKKPYIASMGVYVFKKDILLNLLRWRFPTANDFGSEIIPASAKEFFIKAYLFN 347
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGTIRSFFEANLALT PP FSFYDA KP++TSRRNLPP+KID SKIVDSIISHG
Sbjct: 348 DYWEDIGTIRSFFEANLALTEQPPRFSFYDAAKPMFTSRRNLPPTKIDQSKIVDSIISHG 407
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
SF+ S FIEHSV+GIRSRIN+NVHLKDT+MLGAD+YET+ EVASLLAEGRVP+GIGENTK
Sbjct: 408 SFLNSCFIEHSVIGIRSRINSNVHLKDTVMLGADYYETEDEVASLLAEGRVPIGIGENTK 467
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
IK+CIIDKNARIGKNV+IANSEG+QEADRS+EGFYIRSGVT+ILKN+VI DG VI
Sbjct: 468 IKDCIIDKNARIGKNVVIANSEGVQEADRSSEGFYIRSGVTIILKNAVIKDGLVI 522
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432718|ref|XP_004134146.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/355 (86%), Positives = 337/355 (94%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAATQTPGEAGK WFQGTADAVRQFHWLFED R+K IEDVLILSGDHLYRMDYMD
Sbjct: 168 GYVEVLAATQTPGEAGKNWFQGTADAVRQFHWLFEDARSKNIEDVLILSGDHLYRMDYMD 227
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQNHRQSGADIT+SCLPMDDSRASDFGLMKI+ +GR++SFSEKPKG+DLKAMAVDTT+L
Sbjct: 228 FVQNHRQSGADITLSCLPMDDSRASDFGLMKIDEKGRIISFSEKPKGQDLKAMAVDTTIL 287
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLSK+EA++KPYIASMGVY+FKK+ILLNLLRWRFPTANDFGSEIIPASA E F+KAYLFN
Sbjct: 288 GLSKEEAQKKPYIASMGVYVFKKDILLNLLRWRFPTANDFGSEIIPASAKEFFIKAYLFN 347
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGTIRSFFEANLALT PP FSFYDA KP++TSRRNLPP+KID SKIVDSIISHG
Sbjct: 348 DYWEDIGTIRSFFEANLALTEQPPRFSFYDAAKPMFTSRRNLPPTKIDQSKIVDSIISHG 407
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
SF+ S FIEHSV+GIRSRIN+NVHLKDT+MLGAD+YET+ EVASLLAEGRVP+GIGENTK
Sbjct: 408 SFLNSCFIEHSVIGIRSRINSNVHLKDTVMLGADYYETEDEVASLLAEGRVPIGIGENTK 467
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
IK+CIIDKNARIGKNV+IANSEG+QEADRS+EGFYIRSGVT+ILKN+VI DG VI
Sbjct: 468 IKDCIIDKNARIGKNVVIANSEGVQEADRSSEGFYIRSGVTIILKNAVIKDGLVI 522
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100249|ref|XP_002311802.1| predicted protein [Populus trichocarpa] gi|222851622|gb|EEE89169.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/355 (87%), Positives = 332/355 (93%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G + LAATQTPGEAGK+WFQGTADAVRQFHWLFE PR+K IEDVLILSGDHLYRMDYMD
Sbjct: 174 GFVEALAATQTPGEAGKKWFQGTADAVRQFHWLFEGPRSKEIEDVLILSGDHLYRMDYMD 233
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQNHRQ GADIT+SCLPMDDSRASDFGLMKI+N+GRVLSFSEKPKG DLKAM VDTTVL
Sbjct: 234 FVQNHRQGGADITLSCLPMDDSRASDFGLMKIDNKGRVLSFSEKPKGVDLKAMEVDTTVL 293
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLSK+EA +KPYIASMGVY+FKKEILLNLLRWRFPTANDFGSEIIPASA E ++KAYLFN
Sbjct: 294 GLSKEEALKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIPASAKEFYMKAYLFN 353
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGTIRSFF ANLALT HPP FSFYDA KP+YTSRRNLPPSKID SKIVDSIISHG
Sbjct: 354 DYWEDIGTIRSFFAANLALTEHPPRFSFYDAAKPMYTSRRNLPPSKIDSSKIVDSIISHG 413
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
SF+ + FIEHSV+GIRSRIN+N HL+DT+MLGADFYET+AEVAS++AEG VPVGIGENTK
Sbjct: 414 SFLNNCFIEHSVIGIRSRINSNAHLQDTVMLGADFYETEAEVASVVAEGSVPVGIGENTK 473
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
IKECIIDKNARIGKNV+IANSEGIQEADRS EGFYIRSGVTVILKNSVI DG VI
Sbjct: 474 IKECIIDKNARIGKNVVIANSEGIQEADRSMEGFYIRSGVTVILKNSVIQDGTVI 528
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463124|ref|XP_004149284.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/355 (85%), Positives = 334/355 (94%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAATQTPGEAGKRWFQGTADAVRQFHWLFED R+K IEDVLILSGDHLYRMDYMD
Sbjct: 164 GFVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYMD 223
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQNHRQSGADIT+SC+P+DDSRASDFGLMKI+N GRV+SFSEKP+GKDLKAM VDTTVL
Sbjct: 224 FVQNHRQSGADITLSCIPIDDSRASDFGLMKIDNSGRVISFSEKPRGKDLKAMEVDTTVL 283
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLSK EA KPYIASMGVY+FKKEILLN+LRWRFPTANDFGSEIIP SA E +KAYLFN
Sbjct: 284 GLSKDEALRKPYIASMGVYIFKKEILLNILRWRFPTANDFGSEIIPFSAREFLMKAYLFN 343
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245
DYWEDIGTIRSFFEANLALT PP FSFYD TKPIYTSRRNLPP+KID+ KIVDSIISHG
Sbjct: 344 DYWEDIGTIRSFFEANLALTEQPPRFSFYDETKPIYTSRRNLPPTKIDNCKIVDSIISHG 403
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
F+T+SFI+HSVVGIRSRIN+NVHLKDT+MLGADFYET+ EVA+LLAEGRVP+GIGENTK
Sbjct: 404 CFLTNSFIDHSVVGIRSRINSNVHLKDTVMLGADFYETEGEVAALLAEGRVPIGIGENTK 463
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
IK+CIIDKNARIGKNV++ANSEG+QEADRS+EGFYIRSG+T+IL+NSVI DGFVI
Sbjct: 464 IKDCIIDKNARIGKNVVLANSEGVQEADRSSEGFYIRSGITIILRNSVIKDGFVI 518
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | ||||||
| TAIR|locus:2182132 | 522 | APL1 "ADP glucose pyrophosphor | 0.986 | 0.680 | 0.808 | 4.9e-156 | |
| TAIR|locus:2199241 | 518 | APL2 "ADPGLC-PPase large subun | 0.986 | 0.685 | 0.656 | 8.4e-129 | |
| TAIR|locus:2049364 | 523 | APL4 [Arabidopsis thaliana (ta | 0.986 | 0.678 | 0.616 | 1.4e-119 | |
| TAIR|locus:2136358 | 521 | APL3 [Arabidopsis thaliana (ta | 0.986 | 0.681 | 0.605 | 2e-118 | |
| TAIR|locus:2156263 | 520 | ADG1 "ADP glucose pyrophosphor | 0.972 | 0.673 | 0.529 | 7.4e-98 | |
| UNIPROTKB|P15280 | 514 | AGPS "Glucose-1-phosphate aden | 0.972 | 0.680 | 0.518 | 2.9e-96 | |
| TAIR|locus:2032003 | 476 | APS2 "AT1G05610" [Arabidopsis | 0.938 | 0.710 | 0.356 | 6.8e-56 | |
| TIGR_CMR|SO_1498 | 420 | SO_1498 "glucose-1-phosphate a | 0.563 | 0.483 | 0.371 | 5.6e-34 | |
| UNIPROTKB|Q9KLP4 | 407 | glgC2 "Glucose-1-phosphate ade | 0.741 | 0.656 | 0.300 | 9.1e-29 | |
| TIGR_CMR|VC_A0699 | 407 | VC_A0699 "glucose-1-phosphate | 0.741 | 0.656 | 0.300 | 9.1e-29 |
| TAIR|locus:2182132 APL1 "ADP glucose pyrophosphorylase large subunit 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1521 (540.5 bits), Expect = 4.9e-156, P = 4.9e-156
Identities = 287/355 (80%), Positives = 320/355 (90%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAATQTPGE+GKRWFQGTADAVRQFHWLFED R+K IEDVLILSGDHLYRMDYMD
Sbjct: 168 GYVEVLAATQTPGESGKRWFQGTADAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYMD 227
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
F+Q+HRQSGADI+ISC+P+DD RASDFGLMKI+++GRV+SFSEKPKG DLKAMAVDTT+L
Sbjct: 228 FIQDHRQSGADISISCIPIDDRRASDFGLMKIDDKGRVISFSEKPKGDDLKAMAVDTTIL 287
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLSK+EAE+KPYIASMGVY+FKKEILLNLLRWRFPTANDFGSEIIP SA E ++ AYLFN
Sbjct: 288 GLSKEEAEKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIPFSAKEFYVNAYLFN 347
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHG 245
DYWEDIGTIRSFFEANLALT HP FSFYDA KPIYTSRRNLPP HG
Sbjct: 348 DYWEDIGTIRSFFEANLALTEHPGAFSFYDAAKPIYTSRRNLPPSKIDNSKLIDSIISHG 407
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
SF+T+ IEHS+VGIRSR+ +NV LKDT+MLGAD+YET+AEVA+LLAEG VP+GIGENTK
Sbjct: 408 SFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLGADYYETEAEVAALLAEGNVPIGIGENTK 467
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
I+ECIIDKNAR+GKNVIIANSEGIQEADRS++GFYIRSG+TVILKNSVI DG VI
Sbjct: 468 IQECIIDKNARVGKNVIIANSEGIQEADRSSDGFYIRSGITVILKNSVIKDGVVI 522
|
|
| TAIR|locus:2199241 APL2 "ADPGLC-PPase large subunit" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1264 (450.0 bits), Expect = 8.4e-129, P = 8.4e-129
Identities = 233/355 (65%), Positives = 286/355 (80%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAATQT G+AGK+WFQGTADAVRQF W+FED + K +E VLILSGDHLYRMDYM+
Sbjct: 164 GFVEVLAATQTSGDAGKKWFQGTADAVRQFIWVFEDAKTKNVEHVLILSGDHLYRMDYMN 223
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQ H +S ADIT+SCLPMD+SRASDFGL+KI+ G+++ FSEKPKG DLKAM VDT++L
Sbjct: 224 FVQKHIESNADITVSCLPMDESRASDFGLLKIDQSGKIIQFSEKPKGDDLKAMQVDTSIL 283
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GL +EA E PYIASMGVY+F+KE+LL LLR +PT+NDFGSEIIP + E ++A+LFN
Sbjct: 284 GLPPKEAAESPYIASMGVYVFRKEVLLKLLRSSYPTSNDFGSEIIPLAVGEHNVQAFLFN 343
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHG 245
DYWEDIGTI SFF+ANLALT PP F FYD P +TS R LPP HG
Sbjct: 344 DYWEDIGTIGSFFDANLALTEQPPKFQFYDQKTPFFTSPRFLPPTKVDKCRILDSIVSHG 403
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
F+ ++HS+VGIRSR+ + V L+DTMM+GADFY+T+AE+ASLLAEG+VPVG+G+NTK
Sbjct: 404 CFLRECSVQHSIVGIRSRLESGVELQDTMMMGADFYQTEAEIASLLAEGKVPVGVGQNTK 463
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
IK CIIDKNA+IGKNV+IAN++G++E DR EGF+IRSG+TV+LKN+ I DG I
Sbjct: 464 IKNCIIDKNAKIGKNVVIANADGVEEGDRPEEGFHIRSGITVVLKNATIRDGLHI 518
|
|
| TAIR|locus:2049364 APL4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
Identities = 219/355 (61%), Positives = 278/355 (78%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAATQTPGEAGK+WFQGTADAVR+F W+FED +N+ IE++LILSGDHLYRM+YMD
Sbjct: 169 GFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENILILSGDHLYRMNYMD 228
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQ+H S ADIT+SC P+ +SRAS+FGL+KI+ GRV+ FSEKP G DLK+M DTT+L
Sbjct: 229 FVQSHVDSNADITLSCAPVSESRASNFGLVKIDRGGRVIHFSEKPTGVDLKSMQTDTTML 288
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLS QEA + PYIASMGVY FK E LLNLL ++P++NDFGSE+IPA+ + ++ Y+F
Sbjct: 289 GLSHQEATDSPYIASMGVYCFKTEALLNLLTRQYPSSNDFGSEVIPAAIRDHDVQGYIFR 348
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHG 245
DYWEDIGTI++F+EANLAL P F FYD P YTS R LPP HG
Sbjct: 349 DYWEDIGTIKTFYEANLALVEERPKFEFYDPETPFYTSPRFLPPTKAEKCRMVDSIISHG 408
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
F+ ++ S++G RSR++ V L+DT+MLGAD+Y+T++E+ASLLAEG+VP+GIG++TK
Sbjct: 409 CFLRECSVQRSIIGERSRLDYGVELQDTLMLGADYYQTESEIASLLAEGKVPIGIGKDTK 468
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
I++CIIDKNA+IGKNVII N +QEADR EGFYIRSG+TVI++ + I DG VI
Sbjct: 469 IRKCIIDKNAKIGKNVIIMNKGDVQEADRPEEGFYIRSGITVIVEKATIQDGTVI 523
|
|
| TAIR|locus:2136358 APL3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
Identities = 215/355 (60%), Positives = 275/355 (77%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAATQTPGEAGK+WFQGTADAVR+F W+FED +N+ IE+++ILSGDHLYRM+YMD
Sbjct: 167 GFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMD 226
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
FVQ+H S ADIT+SC P+D+SRAS++GL+ I+ GRV+ FSEKP G DLK+M DTT+
Sbjct: 227 FVQHHVDSKADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMH 286
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185
GLS QEA + PYIASMGVY FK E LL LL WR+P++NDFGSEIIPA+ + ++ Y++
Sbjct: 287 GLSHQEAAKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYR 346
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHG 245
DYWEDIGTI+SF+EAN+AL P F FYD P YTS R LPP HG
Sbjct: 347 DYWEDIGTIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHG 406
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
F+ I+ S++G RSR++ V L+DT+MLGAD Y+T++E+ASLLAEG VP+GIG +TK
Sbjct: 407 CFLGECSIQRSIIGERSRLDYGVELQDTLMLGADSYQTESEIASLLAEGNVPIGIGRDTK 466
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
I++CIIDKNA+IGKNV+I N + ++EADR EGFYIRSG+TV+++ + I DG VI
Sbjct: 467 IRKCIIDKNAKIGKNVVIMNKDDVKEADRPEEGFYIRSGITVVVEKATIKDGTVI 521
|
|
| TAIR|locus:2156263 ADG1 "ADP glucose pyrophosphorylase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 972 (347.2 bits), Expect = 7.4e-98, P = 7.4e-98
Identities = 189/357 (52%), Positives = 257/357 (71%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAA Q+P WFQGTADAVRQ+ WLFE+ + V+E LIL+GDHLYRMDY
Sbjct: 169 GFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE--HNVLE-YLILAGDHLYRMDYEK 223
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
F+Q HR++ ADIT++ LPMD+ RA+ FGLMKI+ EGR++ F+EKPKG+ LKAM VDTT+L
Sbjct: 224 FIQAHRETDADITVAALPMDEQRATAFGLMKIDEEGRIIEFAEKPKGEHLKAMKVDTTIL 283
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQF-LKAYLF 184
GL Q A+E P+IASMG+Y+ ++++L+LLR +FP ANDFGSE+IP + + ++AYL+
Sbjct: 284 GLDDQRAKEMPFIASMGIYVVSRDVMLDLLRNQFPGANDFGSEVIPGATSLGLRVQAYLY 343
Query: 185 NDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXX 243
+ YWEDIGTI +F+ ANL +T P P FSFYD + PIYT R LPP
Sbjct: 344 DGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIG 403
Query: 244 HGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 303
G I + I HSVVG+RS I+ ++D++++GAD+YET E + L A+G VP+GIG+N
Sbjct: 404 EGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETATEKSLLSAKGSVPIGIGKN 463
Query: 304 TKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
+ IK IIDKNARIG NV I NS+ +QEA R +G++I+SG+ ++K+++I G VI
Sbjct: 464 SHIKRAIIDKNARIGDNVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPTGTVI 520
|
|
| UNIPROTKB|P15280 AGPS "Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 185/357 (51%), Positives = 253/357 (70%)
Query: 6 GNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65
G +VLAA Q+P WFQGTADAVRQ+ WLFE+ + V+E LIL+GDHLYRMDY
Sbjct: 163 GFVEVLAAQQSPDNPN--WFQGTADAVRQYLWLFEE--HNVME-FLILAGDHLYRMDYEK 217
Query: 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVL 125
F+Q HR++ +DIT++ LPMD+ RA+ FGLMKI+ EGR++ F+EKPKG+ LKAM VDTT+L
Sbjct: 218 FIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEGRIVEFAEKPKGEQLKAMMVDTTIL 277
Query: 126 GLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQF-LKAYLF 184
GL A+E PYIASMG+Y+ K ++L LLR +FP ANDFGSE+IP + N ++AYL+
Sbjct: 278 GLDDVRAKEMPYIASMGIYVISKNVMLQLLREQFPGANDFGSEVIPGATNIGMRVQAYLY 337
Query: 185 NDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXX 243
+ YWEDIGTI +F+ ANL +T P P FSFYD + PIYT R+LPP
Sbjct: 338 DGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIG 397
Query: 244 HGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 303
G I + I HSVVG+RS I+ ++D++++GAD+YET+A+ L +G +P+GIG+N
Sbjct: 398 EGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETEADKKLLGEKGGIPIGIGKN 457
Query: 304 TKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
I+ IIDKNARIG NV I N + +QEA R +G++I+SG+ ++K++++ G VI
Sbjct: 458 CHIRRAIIDKNARIGDNVKIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 514
|
|
| TAIR|locus:2032003 APS2 "AT1G05610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 127/356 (35%), Positives = 209/356 (58%)
Query: 9 QVLAATQTPGEAGKRWFQGTADAVRQFHWLFED-PRNKVIEDVLILSGDHLYRMDYMDFV 67
+V+AA Q+ + G WFQGTADA+R+ W+FE+ P + + L+L G HLY+MDY +
Sbjct: 135 EVIAAYQSLEDQG--WFQGTADAIRRCLWVFEEFP----VTEFLVLPGHHLYKMDYKMLI 188
Query: 68 QNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGL 127
++HR+S ADITI L FG M++++ V F+ K + +DL ++A T
Sbjct: 189 EDHRRSRADITIVGLSSVTDHDFGFGFMEVDSTNAVTRFTIKGQ-QDLISVANRTA---- 243
Query: 128 SKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQF-LKAYLFND 186
++ + + S G+Y+ +E ++ LLR + D SEIIP + +E +KA++F+
Sbjct: 244 TRSDGTSSCSVPSAGIYVIGREQMVKLLRECLIKSKDLASEIIPGAISEGMKVKAHMFDG 303
Query: 187 YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGS 246
YWED+ +I +++ AN+ + FYD P+YT R LPP G
Sbjct: 304 YWEDVRSIGAYYRANMESIKS---YRFYDRQCPLYTMPRCLPPSSMSVAVITNSIIGDGC 360
Query: 247 FITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV--GIGENT 304
+ I SVVG+R+RI V ++D++++G+D YE + +V E ++ + GIGE +
Sbjct: 361 ILDKCVIRGSVVGMRTRIADEVIVEDSIIVGSDIYEMEEDVRRKGKEKKIEIRIGIGEKS 420
Query: 305 KIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
+I+ I+DKNARIGKNV+I N + ++E +R A+G+ IR G+ +IL+N+VI + ++
Sbjct: 421 RIRRAIVDKNARIGKNVMIINRDNVEEGNREAQGYVIREGIIIILRNAVIPNDSIL 476
|
|
| TIGR_CMR|SO_1498 SO_1498 "glucose-1-phosphate adenylyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 88/237 (37%), Positives = 132/237 (55%)
Query: 6 GNS-QVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYM 64
G S ++L A+Q E W+QGTADAV Q + R+++ + V++LSGDH+YRMDY
Sbjct: 90 GESVEILPASQRYSE---NWYQGTADAVFQN---IDIIRHELPKYVMVLSGDHVYRMDYA 143
Query: 65 DFVQNHRQSGADITISCLPMDDSRASD-FGLMKINNEGRVLSFSEKPKGKDLKAMAVDTT 123
+ H +SGAD+T+SCL + + A+ FG+M+++++ R+L F EKP+
Sbjct: 144 GLLAAHAESGADMTVSCLEVPVAEAAGAFGVMEVDDDMRILGFEEKPQ------------ 191
Query: 124 VLGLSKQ-EAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN---DFGSEIIPASANEQFL 179
L K + +ASMG Y+F E L L+ A DFG +IIP+ + +
Sbjct: 192 ---LPKHCPGNPEKCLASMGNYVFNTEFLFEQLKKDAQNAESDRDFGKDIIPSIIEKHKV 248
Query: 180 KAYLF-----ND--YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 229
AY F N+ YW D+GT+ SF+ AN+ L + P + YDA PI+T + LPP
Sbjct: 249 FAYPFKSAFPNEQAYWRDVGTLDSFWLANMELLSPTPALNLYDAKWPIWTYQEQLPP 305
|
|
| UNIPROTKB|Q9KLP4 glgC2 "Glucose-1-phosphate adenylyltransferase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 93/309 (30%), Positives = 143/309 (46%)
Query: 21 GKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITIS 80
G +W++GTADA+ WL K V++LSGDH+YRMDY ++ H A +TI+
Sbjct: 93 GGKWYEGTADALFHNMWLLARSDAKY---VVVLSGDHIYRMDYAAMLEEHISKNATLTIA 149
Query: 81 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIAS 140
C+ + AS FG+M I+++ R+ F EKP D + + +AS
Sbjct: 150 CMQVPRHEASAFGVMAIDDDSRITCFVEKP---------ADPPCIPNRPDHS-----LAS 195
Query: 141 MGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASANEQFLKAYLF--------ND-YW 188
MG+Y+F ++L L +++DFG ++IP + AY F D YW
Sbjct: 196 MGIYIFNMDVLKKALTEDAEIEQSSHDFGKDVIPKLIATGSVFAYSFCSGKGRVARDCYW 255
Query: 189 EDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFI 248
D+GTI SF++AN+ L P + Y I T + PP S I
Sbjct: 256 RDVGTIDSFYDANMDLLQPVPPMNLYQKNWAIRTYEQQYPPARTVSSATGNEGIFINSII 315
Query: 249 TSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE 308
+ I S I++NV + D+ ++ V S+L + V +GE K+
Sbjct: 316 ANGVINSGGSVQHSIISSNVRINDSALI----------VDSILFDD---VEVGEGCKLIH 362
Query: 309 CIIDKNARI 317
CIIDK+ +I
Sbjct: 363 CIIDKHVKI 371
|
|
| TIGR_CMR|VC_A0699 VC_A0699 "glucose-1-phosphate adenylyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 93/309 (30%), Positives = 143/309 (46%)
Query: 21 GKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITIS 80
G +W++GTADA+ WL K V++LSGDH+YRMDY ++ H A +TI+
Sbjct: 93 GGKWYEGTADALFHNMWLLARSDAKY---VVVLSGDHIYRMDYAAMLEEHISKNATLTIA 149
Query: 81 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIAS 140
C+ + AS FG+M I+++ R+ F EKP D + + +AS
Sbjct: 150 CMQVPRHEASAFGVMAIDDDSRITCFVEKP---------ADPPCIPNRPDHS-----LAS 195
Query: 141 MGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASANEQFLKAYLF--------ND-YW 188
MG+Y+F ++L L +++DFG ++IP + AY F D YW
Sbjct: 196 MGIYIFNMDVLKKALTEDAEIEQSSHDFGKDVIPKLIATGSVFAYSFCSGKGRVARDCYW 255
Query: 189 EDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFI 248
D+GTI SF++AN+ L P + Y I T + PP S I
Sbjct: 256 RDVGTIDSFYDANMDLLQPVPPMNLYQKNWAIRTYEQQYPPARTVSSATGNEGIFINSII 315
Query: 249 TSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE 308
+ I S I++NV + D+ ++ V S+L + V +GE K+
Sbjct: 316 ANGVINSGGSVQHSIISSNVRINDSALI----------VDSILFDD---VEVGEGCKLIH 362
Query: 309 CIIDKNARI 317
CIIDK+ +I
Sbjct: 363 CIIDKHVKI 371
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B2IUY3 | GLGC_NOSP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5589 | 0.9694 | 0.8135 | yes | no |
| P55229 | GLGL1_ARATH | 2, ., 7, ., 7, ., 2, 7 | 0.8394 | 0.9861 | 0.6800 | yes | no |
| B8HM61 | GLGC_CYAP4 | 2, ., 7, ., 7, ., 2, 7 | 0.5252 | 0.9694 | 0.8135 | yes | no |
| B1XLF1 | GLGC_SYNP2 | 2, ., 7, ., 7, ., 2, 7 | 0.5505 | 0.9694 | 0.8135 | yes | no |
| P55243 | GLGL3_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.8235 | 0.9888 | 0.7370 | N/A | no |
| B1WT08 | GLGC_CYAA5 | 2, ., 7, ., 7, ., 2, 7 | 0.5505 | 0.9694 | 0.8135 | yes | no |
| Q3MBJ4 | GLGC_ANAVT | 2, ., 7, ., 7, ., 2, 7 | 0.5505 | 0.9694 | 0.8135 | yes | no |
| A5GLA9 | GLGC_SYNPW | 2, ., 7, ., 7, ., 2, 7 | 0.5294 | 0.9694 | 0.8097 | yes | no |
| P12298 | GLGL1_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.7556 | 0.8333 | 0.9966 | N/A | no |
| Q5N3K9 | GLGC_SYNP6 | 2, ., 7, ., 7, ., 2, 7 | 0.5393 | 0.9694 | 0.8116 | yes | no |
| B7KDB8 | GLGC_CYAP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5382 | 0.9611 | 0.8065 | yes | no |
| P30521 | GLGC_NOSS1 | 2, ., 7, ., 7, ., 2, 7 | 0.5533 | 0.9694 | 0.8135 | yes | no |
| B7K5U7 | GLGC_CYAP8 | 2, ., 7, ., 7, ., 2, 7 | 0.5617 | 0.9694 | 0.8135 | yes | no |
| Q31QN4 | GLGC_SYNE7 | 2, ., 7, ., 7, ., 2, 7 | 0.5393 | 0.9694 | 0.8116 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.976 |
| 4th Layer | 2.7.7.27 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 360 | |||
| PLN02241 | 436 | PLN02241, PLN02241, glucose-1-phosphate adenylyltr | 0.0 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 0.0 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 1e-117 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 3e-98 | |
| PRK00844 | 407 | PRK00844, glgC, glucose-1-phosphate adenylyltransf | 2e-67 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 2e-64 | |
| PRK00725 | 425 | PRK00725, glgC, glucose-1-phosphate adenylyltransf | 5e-64 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 1e-50 | |
| cd04651 | 104 | cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly | 2e-29 | |
| cd02508 | 200 | cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory | 4e-29 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 1e-25 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 3e-25 | |
| TIGR02092 | 369 | TIGR02092, glgD, glucose-1-phosphate adenylyltrans | 7e-18 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 3e-16 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 7e-07 | |
| cd03356 | 79 | cd03356, LbH_G1P_AT_C_like, Left-handed parallel b | 2e-06 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 4e-06 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 7e-06 | |
| cd04652 | 81 | cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, | 2e-05 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 3e-05 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 3e-05 | |
| PRK14359 | 430 | PRK14359, glmU, bifunctional N-acetylglucosamine-1 | 7e-05 | |
| PRK14354 | 458 | PRK14354, glmU, bifunctional N-acetylglucosamine-1 | 8e-05 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 1e-04 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 1e-04 | |
| cd03356 | 79 | cd03356, LbH_G1P_AT_C_like, Left-handed parallel b | 4e-04 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 8e-04 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 0.001 |
| >gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 685 bits (1771), Expect = 0.0
Identities = 259/353 (73%), Positives = 305/353 (86%), Gaps = 3/353 (0%)
Query: 9 QVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQ 68
+VLAATQTPGE G WFQGTADAVRQF WLFED +NK +E+VLILSGDHLYRMDYMDFVQ
Sbjct: 86 EVLAATQTPGEKG--WFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQ 143
Query: 69 NHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLS 128
HR+SGADITI+CLP+D+SRASDFGLMKI++ GR++ FSEKPKG +LKAM VDTTVLGLS
Sbjct: 144 KHRESGADITIACLPVDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLS 203
Query: 129 KQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQF-LKAYLFNDY 187
+EA+EKPYIASMG+Y+FKK++LL LLRWRFPTANDFGSEIIP + E + ++AYLF+ Y
Sbjct: 204 PEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQAYLFDGY 263
Query: 188 WEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSF 247
WEDIGTI+SF+EANLALT PP FSFYD PIYTS R LPPSKI+D +I DSIISHG F
Sbjct: 264 WEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIISHGCF 323
Query: 248 ITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 307
+ IEHSVVG+RSRI V ++DT+M+GAD+YET+ E+ASLLAEG+VP+GIGENTKI+
Sbjct: 324 LRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIR 383
Query: 308 ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
IIDKNARIGKNV+I N +G+QEADR EG+YIRSG+ VILKN+VI DG VI
Sbjct: 384 NAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436
|
Length = 436 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 538 bits (1389), Expect = 0.0
Identities = 199/352 (56%), Positives = 260/352 (73%), Gaps = 7/352 (1%)
Query: 10 VLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN 69
VLAA QTP WFQGTADAVR++ W F++ +++ LILSGD LYRMDY FVQ+
Sbjct: 84 VLAAQQTP--ENPSWFQGTADAVRKYLWHFQEWD---VDEYLILSGDQLYRMDYRLFVQH 138
Query: 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSK 129
HR++GADIT++ LP+D+ AS FGLMK +++GR+ FSEKPKG +LKAMAVDT+ LGLS
Sbjct: 139 HRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSP 198
Query: 130 QEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWE 189
+EA+ KPY+ASMG+Y+F +++L +LL + P DFG EIIP + + +++YLF+ YWE
Sbjct: 199 EEAKGKPYLASMGIYVFSRDVLFDLLN-KNPEYTDFGKEIIPEAIRDYKVQSYLFDGYWE 257
Query: 190 DIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFI 248
DIGTI +F+EANLALT P P FSFYD PIYT R LPPSK+ D+ I +SII+ G I
Sbjct: 258 DIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIAEGCII 317
Query: 249 TSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE 308
+ I HSV+GIRSRI + ++DT+++GADFYE+ E L EG+ P+GIGE T IK
Sbjct: 318 KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKR 377
Query: 309 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
IIDKNARIG NV I N + ++EADR +GFYIR G+ V++KN+VI DG VI
Sbjct: 378 AIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429
|
Length = 429 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 343 bits (882), Expect = e-117
Identities = 130/322 (40%), Positives = 185/322 (57%), Gaps = 45/322 (13%)
Query: 10 VLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN 69
+L A Q E+G W+QGTADAV Q L ED E VLILSGDH+Y+MDY +
Sbjct: 79 LLPAQQR--ESGTDWYQGTADAVYQNLDLIEDYD---PEYVLILSGDHIYKMDYEKMLDY 133
Query: 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKP-KGKDLKAMAVDTTVLGLS 128
H +SGAD+TI+C+P+ AS FG+M+++ +GR++ F EKP + M
Sbjct: 134 HIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEKPANPPSIPGM---------- 183
Query: 129 KQEAEEKPYIASMGVYLFKKEILLNLLRWR---FPTANDFGSEIIPASANEQFLKAYLFN 185
+ASMG+Y+F K++L LL +++DFG +IIP + E ++AYLF+
Sbjct: 184 -----PDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQAYLFS 238
Query: 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDS--KIVDSIIS 243
YW D+GTI SF+EAN+ L + P F YD PIYT LPP+K DS ++VDS++S
Sbjct: 239 GYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVS 298
Query: 244 HGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 303
G I+ + + HSV+GIR RI + ++D++++G VGIG
Sbjct: 299 EGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRG 339
Query: 304 TKIKECIIDKNARIGKNVIIAN 325
I+ IIDKN RIG+ V+I N
Sbjct: 340 AVIRNAIIDKNVRIGEGVVIGN 361
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 296 bits (759), Expect = 3e-98
Identities = 117/355 (32%), Positives = 184/355 (51%), Gaps = 52/355 (14%)
Query: 10 VLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN 69
+L A Q G G+RW++GTADA+ Q + E VLILSGDH+Y+MDY D +
Sbjct: 87 ILPAQQREG--GERWYEGTADAIYQNLLIIRRSD---PEYVLILSGDHIYKMDYSDMLDF 141
Query: 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSK 129
H +SGAD+T++ + AS FG+M ++ GR++ F EKP +
Sbjct: 142 HIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVEKPADGP-----PSNS------ 190
Query: 130 QEAEEKPYIASMGVYLFKKEILLNLLRW---RFPTANDFGSEIIPASANEQFLKAYLFND 186
+ASMG+Y+F ++L LL +++DFG +IIP + AY F+
Sbjct: 191 --------LASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSG 242
Query: 187 YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHG 245
YW D+GTI S++EAN+ L + P + YD PIYT +NLPP+K +DS++ +S+++ G
Sbjct: 243 YWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGG 302
Query: 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 305
I+ + +E+SV+ RI +++++++ V IGE
Sbjct: 303 CIISGT-VENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAV 342
Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
++ IIDKN IG+ V+I + E DR + F G+ V+ K VI +
Sbjct: 343 LRRAIIDKNVVIGEGVVIGGDK--PEEDR--KRFRSEEGIVVVPKGMVIKLDIME 393
|
Length = 393 |
| >gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (556), Expect = 2e-67
Identities = 101/356 (28%), Positives = 167/356 (46%), Gaps = 64/356 (17%)
Query: 21 GKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITIS 80
GKRW+ G+ADA+ Q L ED + V++ DH+YRMD V H +SGA +T++
Sbjct: 94 GKRWYLGSADAIYQSLNLIEDEDP---DYVVVFGADHVYRMDPRQMVDFHIESGAGVTVA 150
Query: 81 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVD-TTVLGLSKQEAEEKPYIA 139
+ + AS FG+++++ +GR+ F EKP D + D L A
Sbjct: 151 AIRVPREEASAFGVIEVDPDGRIRGFLEKP--ADPPGLPDDPDEAL-------------A 195
Query: 140 SMGVYLFKKEILLNLLRWRF---PTANDFGSEIIPASANEQFLKAYLFND---------- 186
SMG Y+F + L++ LR +++D G +IIP Y F+
Sbjct: 196 SMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERD 255
Query: 187 --YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDS-----KIVD 239
YW D+GTI ++++A++ L + P+F+ Y+ PIYTS NLPP+K D D
Sbjct: 256 RGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQD 315
Query: 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 299
S++S GS I+ + + +SV+ + + ++D S+L +G V
Sbjct: 316 SLVSAGSIISGATVRNSVLSPNVVVESGAEVED----------------SVLMDG---VR 356
Query: 300 IGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYI-RSGVTVILKNSVI 354
IG ++ I+DKN + I G+ + + F + G+ V+ K +
Sbjct: 357 IGRGAVVRRAILDKNVVVPPGATI----GV-DLEEDRRRFTVSEGGIVVVPKGQRV 407
|
Length = 407 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (533), Expect = 2e-64
Identities = 111/352 (31%), Positives = 169/352 (48%), Gaps = 72/352 (20%)
Query: 18 GEAGKRWFQGTADAVRQ-FHWLFE-DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGA 75
G +W++GTA A+ Q ++ + DP E VLILSGDH+Y+MDY + H++ A
Sbjct: 91 ESEGGKWYKGTAHAIYQNIDYIDQYDP-----EYVLILSGDHIYKMDYDKMLDYHKEKEA 145
Query: 76 DITISCL--PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAE 133
D+TI+ + P ++ AS FG+M + R++ F EKPK
Sbjct: 146 DVTIAVIEVPWEE--ASRFGIMNTDENMRIVEFEEKPK---------------------N 182
Query: 134 EKPYIASMGVYLFKKEILLNLLRWRFPTAN---DFGSEIIPASANEQF-LKAYLFNDYWE 189
K +ASMG+Y+F + L L N DFG +IP E L AY F YW+
Sbjct: 183 PKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWK 242
Query: 190 DIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFI 248
D+GTI S +EAN+ L + +D IY+ NLPP I +++K+ +S++ G +
Sbjct: 243 DVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVV 302
Query: 249 TSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE 308
+ +EHSV+ ++ +KD++++ A+ IGEN I+
Sbjct: 303 YGT-VEHSVLFQGVQVGEGSVVKDSVIM------PGAK-------------IGENVVIER 342
Query: 309 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
II +NA IG VII + + +TVI +N VI G VI
Sbjct: 343 AIIGENAVIGDGVIIGGGKEV---------------ITVIGENEVIGVGTVI 379
|
Length = 380 |
| >gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 5e-64
Identities = 102/348 (29%), Positives = 172/348 (49%), Gaps = 66/348 (18%)
Query: 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 83
W++GTADAV Q + K V+IL+GDH+Y+MDY + +H +SGAD T++CL
Sbjct: 109 WYRGTADAVYQNLDIIRRYDPKY---VVILAGDHIYKMDYSRMLADHVESGADCTVACLE 165
Query: 84 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVD-TTVLGLSKQEAEEKPYIASMG 142
+ AS FG+M ++ R+ +F EKP + AM D L ASMG
Sbjct: 166 VPREEASAFGVMAVDENDRITAFVEKP--ANPPAMPGDPDKSL-------------ASMG 210
Query: 143 VYLFKKEILLNLLRWRFPTAN---DFGSEIIPASANEQFLKAYLFND-----------YW 188
+Y+F + L LL N DFG +IIP E + A+ F+D YW
Sbjct: 211 IYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYW 270
Query: 189 EDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI----DDSK--IVDSII 242
D+GT+ ++++ANL L + P YD PI+T + LPP+K + ++S++
Sbjct: 271 RDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLV 330
Query: 243 SHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVP-VGIG 301
S G I+ + + SV+ R R+N+ +++D+++L P V +G
Sbjct: 331 SGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLL--------------------PDVNVG 370
Query: 302 ENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYI-RSGVTVI 348
+ +++ C+ID+ I + ++I ++ + A+ F G+ ++
Sbjct: 371 RSCRLRRCVIDRGCVIPEGMVIG-----EDPEEDAKRFRRSEEGIVLV 413
|
Length = 425 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 1e-50
Identities = 62/202 (30%), Positives = 88/202 (43%), Gaps = 35/202 (17%)
Query: 9 QVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQ 68
QV A Q GTA AV D + E VL+L GDH+YRMD+ + VQ
Sbjct: 74 QVTYALQPEPR-------GTAPAVALAADFLGD--DDP-ELVLVLGGDHIYRMDFEEAVQ 123
Query: 69 NHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLS 128
R AD T++ + + +G+++ + GRV+ F EKP
Sbjct: 124 KARAKAADGTVTFGIVPVEDPTGYGVIEFDENGRVIRFVEKPDL---------------- 167
Query: 129 KQEAEEKPYIASMGVYLFKKEILLNLLR--WRFPTANDFGSEIIPASANEQFLK-AYLFN 185
+ ASMG+Y F + L L + D ++ IPA+ + L A+LF
Sbjct: 168 ----PKASNYASMGIYFFNSGVFLFLAKYLKELARGEDEITDAIPAALEDGDLDLAFLFR 223
Query: 186 D--YWEDIGTIRSFFEANLALT 205
YW D+GT S +EANL L
Sbjct: 224 GYAYWSDVGTWDSLWEANLKLL 245
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-29
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 23/127 (18%)
Query: 228 PPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEV 287
PP ++ +S++S G I+ +E+SV+ R+ + ++D++++
Sbjct: 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN--------- 51
Query: 288 ASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347
VGIG N I+ IIDKN I V+I A + G+ V
Sbjct: 52 ----------VGIGRNAVIRRAIIDKNVVIPDGVVIGGDPEEDR----ARFYVTEDGIVV 97
Query: 348 ILKNSVI 354
+ K VI
Sbjct: 98 VGKGMVI 104
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104 |
| >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-29
Identities = 57/183 (31%), Positives = 76/183 (41%), Gaps = 63/183 (34%)
Query: 10 VLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN 69
+L Q G W++GTADA+ Q E E VLILSGDH+Y MDY + +
Sbjct: 80 ILPPQQRKGG---DWYRGTADAIYQNLDYIERSDP---EYVLILSGDHIYNMDYREMLDF 133
Query: 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSK 129
H +SGA D TV+
Sbjct: 134 HIESGA---------------------------------------------DITVV---- 144
Query: 130 QEAEEKPYIASMGVYLFKKEILLNLLRWRF-PTANDFGSEIIPASANEQFLKAYLFNDYW 188
Y ASMG+Y+F K++L+ LL ++DFG +IIPA + + AY FN YW
Sbjct: 145 -------YKASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYW 197
Query: 189 EDI 191
DI
Sbjct: 198 ADI 200
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 74/306 (24%), Positives = 125/306 (40%), Gaps = 63/306 (20%)
Query: 27 GTADAVRQF-HWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 85
GTA A++ L +D L+L+GD L +D + ++ H++ GA TI+ +
Sbjct: 85 GTAGALKNALDLL-------GGDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL 137
Query: 86 DSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 144
D S+FG+++ + +GRV+ F EKP E + + G+Y
Sbjct: 138 D--PSEFGVVETDDGDGRVVEFREKPG-------------------PEEPPSNLINAGIY 176
Query: 145 LFKKEILLNLLRWRFPTANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN-L 202
+F E+ + DF E++PA A + + + Y+F YW DIGT EAN L
Sbjct: 177 IFDPEVFDYI---EKGERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANEL 233
Query: 203 ALTAHPPMFSFYDATKPIYTSRRNL-PPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIR 261
L + + P I + I G+ I ++V+G
Sbjct: 234 LLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPG----AKIGPGALIGP----YTVIGEG 285
Query: 262 SRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNV 321
I V +K+ S++ + V IG + I + II +N +IG ++
Sbjct: 286 VTIGNGVEIKN----------------SIIMDN---VVIGHGSYIGDSIIGENCKIGASL 326
Query: 322 IIANSE 327
II +
Sbjct: 327 IIGDVV 332
|
Length = 358 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-25
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 30/166 (18%)
Query: 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 86
GTA AVR D +D L+++GD L +D + ++ HR+ GAD TI+ ++D
Sbjct: 82 GTAGAVRNAEDFLGD------DDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVED 135
Query: 87 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 146
S +G+++++++GRV F EKP + +A+ G+Y+F
Sbjct: 136 --PSRYGVVELDDDGRVTRFVEKPT---------------------LPESNLANAGIYIF 172
Query: 147 KKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIG 192
+ EI L+ + P D ++ IP E + Y + YW DIG
Sbjct: 173 EPEI-LDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 7e-18
Identities = 63/288 (21%), Positives = 126/288 (43%), Gaps = 53/288 (18%)
Query: 48 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 107
E ++L+ + +D ++ H ++G DIT+ + + AS++ + +E S
Sbjct: 115 EYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDE----SGK 170
Query: 108 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS 167
K G++L + +E E S+ +Y+ ++L+ LL G
Sbjct: 171 VKSIGQNL------------NPEEEENI----SLDIYIVSTDLLIELLY----ECIQRGK 210
Query: 168 EIIPASANEQFLK-----AYLFNDYWEDIGTIRSFFEANLALTAHPPMFS--FYDATKPI 220
+ LK AY + Y +I +++S+++AN+ L P F FY + PI
Sbjct: 211 LTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLL-DPQNFQSLFYSSQGPI 269
Query: 221 YTSRRNLPPSK-IDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 279
YT ++ PP+ ++SK+ +S++++G I +E+S++ + + +K+ +++
Sbjct: 270 YTKVKDEPPTYYAENSKVENSLVANGCIIEGK-VENSILSRGVHVGKDALIKNCIIM--- 325
Query: 280 FYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSE 327
IGE ++ IIDK+ I NV IA +
Sbjct: 326 ---QRTV-------------IGEGAHLENVIIDKDVVIEPNVKIAGTS 357
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 369 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-16
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 35/175 (20%)
Query: 27 GTADAVRQFHWLFEDPRNKVIED-VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 85
GT A++ K+ ED L+L+GD + +D + + R SGAD T++ +
Sbjct: 82 GTGGAIKNA-------LPKLPEDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVP 134
Query: 86 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 145
D AS +G + ++ +GRV++F EK G I GVYL
Sbjct: 135 D--ASRYGNVTVDGDGRVIAFVEKGPG--------------------AAPGLING-GVYL 171
Query: 146 FKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 200
+KEIL + F ++++PA L + + Y+ DIG + A
Sbjct: 172 LRKEILAEIPADAF----SLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 7e-07
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 17/65 (26%)
Query: 300 IGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV----ILKNSVIT 355
IGE T IK +I +N +IGKNV+I NS YI VT+ + +S++
Sbjct: 8 IGEGTTIKNSVIGRNCKIGKNVVIDNS-------------YIWDDVTIEDGCTIHHSIVA 54
Query: 356 DGFVI 360
DG VI
Sbjct: 55 DGAVI 59
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-06
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 19/77 (24%)
Query: 250 SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 309
++ I++SV+G RI V + + S+L + V IG N+ I +
Sbjct: 11 NAIIKNSVIGDNVRIGDGVTITN----------------SILMDN---VTIGANSVIVDS 51
Query: 310 IIDKNARIGKNVIIANS 326
II NA IG+NV + N
Sbjct: 52 IIGDNAVIGENVRVVNL 68
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 4e-06
Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 37/156 (23%)
Query: 50 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASD----FGLMKINNEGRVLS 105
L+++GD L ++Y + H+++ AD T+ R + +G+++ GR+ S
Sbjct: 98 FLVMNGDILTNLNYEHLLDFHKENNADATVCV------REYEVQVPYGVVETEG-GRITS 150
Query: 106 FSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 165
EKP ++ + G+Y+ + E+L + + F D
Sbjct: 151 IEEKPTHS-----------------------FLVNAGIYVLEPEVLDLIPKNEFFDMPDL 187
Query: 166 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEAN 201
++I + + + ++YW DIG + +AN
Sbjct: 188 IEKLI---KEGKKVGVFPIHEYWLDIGRPEDYEKAN 220
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 60/293 (20%), Positives = 103/293 (35%), Gaps = 77/293 (26%)
Query: 48 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 107
+D ++ GD+L + FV++ + D I + D A FG+ + + R+L
Sbjct: 99 DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTA--FGVAVLEDGKRILKLV 156
Query: 108 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS 167
EKPK E +A +G+Y+F+ P +
Sbjct: 157 EKPK---------------------EPPSNLAVVGLYMFR------------PLIFEAIK 183
Query: 168 EIIPASANE-------QFL-------KAYLFNDYWEDIGTIRSFFEANLAL--TAHPPMF 211
I P+ E Q+L +W+D G +AN + +
Sbjct: 184 NIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQ 243
Query: 212 SFYDATKPIYTSRRNLPP-SKIDDSKIVD-SIISHGSFITSSFIEH-SVVGIRSRINANV 268
D +K R + +KI +S I ++I I +S+I + +G I
Sbjct: 244 GVDDESK--IRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIR--- 298
Query: 269 HLKDTMMLGADFYETDAEVA-SLLAEGRVPVGIGENTKIKECIIDKNARIGKN 320
DAEV S++ + V G+ +I + +I K RI N
Sbjct: 299 ---------------DAEVEHSIVLDESVIEGVQ--ARIVDSVIGKKVRIKGN 334
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-05
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 17/65 (26%)
Query: 300 IGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV----ILKNSVIT 355
+GE T IK +I N +IGK V I N I VT+ L+N +I
Sbjct: 8 VGEKTSIKRSVIGANCKIGKRVKITNC-------------VIMDNVTIEDGCTLENCIIG 54
Query: 356 DGFVI 360
+G VI
Sbjct: 55 NGAVI 59
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 81 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 49/168 (29%)
Query: 48 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 107
+D ++ GD++++ + +++ + G+ TI +DD +G+++ + +G+V+
Sbjct: 100 DDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSR--YGVVEFDEDGKVIGLE 157
Query: 108 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS 167
EKPK E K +A G+Y + + +
Sbjct: 158 EKPK---------------------EPKSNLAVTGLYFYDPSVF------------EAIK 184
Query: 168 EIIP--------ASANEQFLK------AYLFNDYWEDIGTIRSFFEAN 201
+I P A + +++ A L +W D GT S EAN
Sbjct: 185 QIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEAN 232
|
Length = 286 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 45/190 (23%), Positives = 71/190 (37%), Gaps = 58/190 (30%)
Query: 27 GTADAV-RQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 85
G A AV +L ++P V+ L GD+L + V++ + AD +I ++
Sbjct: 84 GLAHAVLAARDFLGDEPF------VVYL-GDNLIQEGISPLVRDFLEEDADASILLAEVE 136
Query: 86 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 145
D R FG+ +++ GR++ EKPK E +A +GVY
Sbjct: 137 DPRR--FGVAVVDD-GRIVRLVEKPK---------------------EPPSNLALVGVYA 172
Query: 146 FKKEILLNLLRWRFPTANDFGSEIIPASANE-------QFL-------KAYLFNDYWEDI 191
F I D S + P+ E Q+L + +W+D
Sbjct: 173 FTPAIF------------DAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDT 220
Query: 192 GTIRSFFEAN 201
GT EAN
Sbjct: 221 GTPEDLLEAN 230
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 79/337 (23%), Positives = 123/337 (36%), Gaps = 84/337 (24%)
Query: 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQ-----NHRQSGADITI 79
+ GT A+ +P++ E VLIL+GD M V+ ++ ADI +
Sbjct: 79 YPGTGGALMGI-----EPKH---ERVLILNGD-------MPLVEKDELEKLLENDADIVM 123
Query: 80 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIA 139
S + D +G + I N G+V E+ KD E E K
Sbjct: 124 SVFHLAD--PKGYGRVVIEN-GQVKKIVEQ---KDAN--------------EEELKIKSV 163
Query: 140 SMGVYLFKKEILLNLL---------RWRFPT-----ANDFGSEIIPASANEQFLKAYLFN 185
+ GVYLF +++L L + + T A + G I +E+ N
Sbjct: 164 NAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMG--VN 221
Query: 186 DYW-----EDI--GTIRSFFEANLALTAHPPMFSFYDATKP------IYTSRRNLPPSKI 232
+ E+I I+ + P + ++ + R L SKI
Sbjct: 222 SKFELAKAEEIMQERIKKNAMKQ-GVIMRLPETIYIESGVEFEGECELEEGVRILGKSKI 280
Query: 233 DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLA 292
+S I S I S IE+S VG + I +K+T + +F ET A L
Sbjct: 281 -----ENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHI--GNFVETKN--AKLNG 331
Query: 293 EGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGI 329
V G + + +C ID+ IG I N +G
Sbjct: 332 -----VKAGHLSYLGDCEIDEGTNIGAGTITCNYDGK 363
|
Length = 430 |
| >gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 235 SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA-----DFYETDAEVAS 289
S+IVDS I G IT+S IE S VG + HL+ ++G +F E
Sbjct: 296 SRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKST-- 353
Query: 290 LLAEGRVPVGIGENTKIKECIIDKNARIGKNV 321
IGE TK+ +A +G+NV
Sbjct: 354 ----------IGEGTKVSHLTYIGDAEVGENV 375
|
Length = 458 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 20/84 (23%)
Query: 241 IISHGSFI-TSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 299
+I G+ I + I++SV+G +I NV + + S + + V
Sbjct: 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDN----------------SYIWDD---VT 41
Query: 300 IGENTKIKECIIDKNARIGKNVII 323
I + I I+ A IGK I
Sbjct: 42 IEDGCTIHHSIVADGAVIGKGCTI 65
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 32/175 (18%)
Query: 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 86
GTA + L D E +L+ D + + + H++ GA+ TI ++D
Sbjct: 85 GTAGPLA----LARDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED 140
Query: 87 SRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 145
S +G++ + N GR+ F EKPK V + + G+Y+
Sbjct: 141 P--SKYGVVVHDENTGRIERFVEKPKVF------VGNKI---------------NAGIYI 177
Query: 146 FKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 200
+L + + R PT+ EI P A+E L AY +W DIG + F +
Sbjct: 178 LNPSVL-DRIPLR-PTS--IEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKG 228
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 4e-04
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 17/65 (26%)
Query: 300 IGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV----ILKNSVIT 355
IGEN IK +I N RIG V I NS + VT+ ++ +S+I
Sbjct: 8 IGENAIIKNSVIGDNVRIGDGVTITNS-------------ILMDNVTIGANSVIVDSIIG 54
Query: 356 DGFVI 360
D VI
Sbjct: 55 DNAVI 59
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 8e-04
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 25/132 (18%)
Query: 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDYM-DFVQNHRQSGADITISCLPM 84
GT AV+Q DVL+L GD L + + ++ HR++GAD+T+ +
Sbjct: 74 GTGHAVKQA-LPALKDFE---GDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAEL 129
Query: 85 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 144
+D + +G + + G+VL E+ KD E E+ + G+Y
Sbjct: 130 ED--PTGYGRIIRDGNGKVLRIVEE---KDAT--------------EEEKAIREVNAGIY 170
Query: 145 LFKKEILLNLLR 156
F E L L
Sbjct: 171 AFDAEFLFEALP 182
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 79/352 (22%), Positives = 124/352 (35%), Gaps = 88/352 (25%)
Query: 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDYM-DFVQNHRQSGADITISCLPM 84
GT AV Q D + DVL+L GD L + + + + H GA T+ +
Sbjct: 79 GTGHAVLQALPALADDYD---GDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAEL 135
Query: 85 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP--YIASMG 142
DD + +G + + G V + E+ KD EEK I + G
Sbjct: 136 DD--PTGYGRIVRDGNGEVTAIVEE---KDA---------------SEEEKQIKEINT-G 174
Query: 143 VYLFKKEILLNLLRWRFPTANDFG----SEIIP-ASANEQFLKAYLFNDYWEDIG----- 192
+Y F LL L + N G +++I A + ++A +D E +G
Sbjct: 175 IYAFDGAALLRALP-KLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRV 233
Query: 193 ---TIRSFFEANLA-------LTAHPPMFSFYDATKP------IYTSRRNLPPSKIDD-- 234
+ +A +T P ++ I + + I D
Sbjct: 234 QLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNV 293
Query: 235 -----SKIVDSIISHGSFITS-SFIEHSVVGIRSRINANVHLKDTMMLGAD-----FYET 283
S I DS+I + I + S IE S VG + + L+ +LGAD F E
Sbjct: 294 VIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEV 353
Query: 284 -DAEVASLLAEGRVPVGIGENTK------IKECIIDKNARIGKNVIIANSEG 328
A IG+ +K + + I +N IG I N +G
Sbjct: 354 KKAT-------------IGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDG 392
|
Length = 460 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.98 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 99.98 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.97 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.97 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.97 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 99.97 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.97 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.97 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.96 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 99.95 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 99.95 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 99.9 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 99.89 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 99.89 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 99.88 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 99.87 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 99.87 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 99.87 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 99.85 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 99.84 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 99.83 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 99.82 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 99.82 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 99.81 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 99.8 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 99.8 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 99.78 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 99.78 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 99.76 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 99.75 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.74 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.74 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 99.73 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 99.72 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.67 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.62 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.59 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.59 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.56 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 99.55 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.55 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.53 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.53 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.53 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.52 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.49 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.46 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.46 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.43 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.43 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.42 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.41 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.4 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.39 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.33 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.32 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.29 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.28 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.27 | |
| PLN02296 | 269 | carbonate dehydratase | 99.27 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.26 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.25 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.25 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.24 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.24 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.23 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.23 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 99.21 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.21 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.21 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 99.21 | |
| PLN02472 | 246 | uncharacterized protein | 99.2 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.2 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.2 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 99.19 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.19 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.19 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.18 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.17 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 99.17 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.16 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 99.15 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.14 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.13 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.13 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.13 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.12 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.12 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.11 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.11 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.1 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 99.09 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.09 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.08 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.08 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.07 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.07 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.07 | |
| PLN02296 | 269 | carbonate dehydratase | 99.07 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.05 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.05 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.04 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 99.04 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 99.03 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.0 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.0 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 99.0 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.99 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 98.99 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.99 | |
| PLN02472 | 246 | uncharacterized protein | 98.99 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.99 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.98 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.98 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 98.98 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.98 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 98.97 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.97 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.95 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 98.95 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.9 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 98.89 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.87 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 98.87 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.86 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.83 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.82 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 98.79 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.78 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.78 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.77 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.76 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.75 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 98.74 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.73 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.73 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.67 | |
| PLN02917 | 293 | CMP-KDO synthetase | 98.66 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.66 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.64 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.64 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.63 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.6 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.59 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 98.59 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.59 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.58 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.57 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.57 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.51 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.51 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.51 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.48 | |
| PLN02357 | 360 | serine acetyltransferase | 98.47 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.47 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 98.46 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.45 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.45 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 98.44 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.43 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.42 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.42 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.41 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.41 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.4 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.39 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.39 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.38 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 98.36 | |
| PLN02739 | 355 | serine acetyltransferase | 98.35 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.34 | |
| PLN02739 | 355 | serine acetyltransferase | 98.33 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.32 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 98.32 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.32 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 98.31 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.28 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.27 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.26 | |
| PLN02357 | 360 | serine acetyltransferase | 98.26 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.25 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.24 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.21 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.21 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.18 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.92 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 97.86 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 97.85 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 97.84 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 97.83 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 97.8 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.71 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 97.69 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.62 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 97.52 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 97.46 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 97.4 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 97.4 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.32 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 97.23 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 97.12 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 96.94 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 96.93 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 96.9 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 96.85 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 96.81 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 96.78 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 96.42 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 96.16 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 96.14 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 96.01 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 95.95 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 95.82 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 94.97 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 91.9 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 91.66 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 90.33 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 87.04 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 87.03 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 86.71 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 82.58 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 81.91 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 80.8 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 80.6 |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=373.71 Aligned_cols=309 Identities=38% Similarity=0.667 Sum_probs=273.0
Q ss_pred CCCCcEEEeeCcccCCCCCCccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEe
Q 018109 3 QLTGNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL 82 (360)
Q Consensus 3 ~~~g~~~i~~~~~~~~~~~~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~ 82 (360)
...|+..++++.+. ...+.||.|||+|+++....+.+ ...+.+|+++||+++++|+++|+++|.+++|++|+++.
T Consensus 80 ~~~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~ 154 (393)
T COG0448 80 RKNGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVK 154 (393)
T ss_pred cccCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEE
Confidence 45567777777777 23467999999999999999986 35799999999999999999999999999999999999
Q ss_pred ecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCC--
Q 018109 83 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP-- 160 (360)
Q Consensus 83 ~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~-- 160 (360)
+++..++++||++.+|++++|++|.|||..... ...++++|+|+|++++|.++|++...
T Consensus 155 ~Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~ 215 (393)
T COG0448 155 EVPREEASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDP 215 (393)
T ss_pred ECChHhhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhccc
Confidence 999988999999999999999999999987210 12489999999999999999987543
Q ss_pred -CCcchhhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCcee-cCceee
Q 018109 161 -TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIV 238 (360)
Q Consensus 161 -~~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~ 238 (360)
...+|.++++|.+++.+.+++|+++|||.|+||.++|++||+++++..+.+.+++++|+|++.....||+++ .++.+.
T Consensus 216 ~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~ 295 (393)
T COG0448 216 NSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVS 295 (393)
T ss_pred CccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEe
Confidence 356899999999999988999999999999999999999999999977778899999999999999999999 778889
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEEC
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 318 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig 318 (360)
+|.|++||.|.+ .|.+|+|+.+++|+.++.|++|++|++ |.||+||.|++|||++||.|+
T Consensus 296 nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~ 355 (393)
T COG0448 296 NSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIG 355 (393)
T ss_pred eeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeC
Confidence 999999999998 999999999999999999999999998 999999999999999999999
Q ss_pred CCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCcc
Q 018109 319 KNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 359 (360)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~ 359 (360)
+|++|++.+ .+...-. +.+. +++++|+++..++.+..
T Consensus 356 ~g~~i~~~~--~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 356 EGVVIGGDK--PEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred CCcEEcCCc--chhcccc-cccc-CCcEEEecccEeccccc
Confidence 999999875 2222222 4444 78889999988877653
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=366.50 Aligned_cols=337 Identities=74% Similarity=1.225 Sum_probs=284.0
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
|++|||+|+++++.++++.....+++|||++||++++.|+.+++++|+++++++|+++.+++.+++++||++.+|++++|
T Consensus 99 ~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~v 178 (436)
T PLN02241 99 WFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRI 178 (436)
T ss_pred cccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCCE
Confidence 67999999999988876411011479999999999999999999999999999999999887655789999999888999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccccccc-CceEEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANE-QFLKAY 182 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~-~~I~~~ 182 (360)
.+|.|||..+....+++++++|+.+++..+....++++|+|+|+|++|..++++..+...++..++++.++++ .++++|
T Consensus 179 ~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g~~v~~~ 258 (436)
T PLN02241 179 IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQAY 258 (436)
T ss_pred EEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcCCeEEEE
Confidence 9999999765555677888777755543222357899999999999998777665433346667889988875 689999
Q ss_pred EeCCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEcceEEeeeEEecCe
Q 018109 183 LFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRS 262 (360)
Q Consensus 183 ~~~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~ 262 (360)
.+++||.|+|+|++|+++++.+|...+...++....+++......+|+.+.++.+.++.|+++|.|+++.|.+|+||++|
T Consensus 259 ~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I~~~~~I~~~~I~~svI~~~~ 338 (436)
T PLN02241 259 LFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIISHGCFLRECKIEHSVVGLRS 338 (436)
T ss_pred eeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEEcCCcEEcCeEEEeeEEcCCC
Confidence 99999999999999999999999877666677777888888778899999888888999999999998888999999999
Q ss_pred EECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEe
Q 018109 263 RINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIR 342 (360)
Q Consensus 263 ~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~ 342 (360)
.|+++|.|.+++++|.+|++...........|..++.||++|.|++++|++++.||+++++.++.++.++.++|+++.++
T Consensus 339 ~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~ 418 (436)
T PLN02241 339 RIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIR 418 (436)
T ss_pred EECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEEecccccCCccccccccEEe
Confidence 99999999999999977666543222122233233589999999999999999999999999999999999999999999
Q ss_pred CCeEEEcCCcEeCCCccC
Q 018109 343 SGVTVILKNSVITDGFVI 360 (360)
Q Consensus 343 ~~~~~ig~~~~i~~g~~i 360 (360)
+|.++||++++|++|++|
T Consensus 419 ~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 419 SGIVVILKNAVIPDGTVI 436 (436)
T ss_pred CCEEEEcCCcEeCCCCCC
Confidence 998899999999999986
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=359.92 Aligned_cols=332 Identities=57% Similarity=0.987 Sum_probs=277.1
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
++|||+||+++.+++++ ..+++|||++||+++++|+++++++|+++++++|+++.+++.+.+..||++.+|++++|.
T Consensus 97 ~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~V~ 173 (429)
T PRK02862 97 FQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRIT 173 (429)
T ss_pred ccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCcEE
Confidence 48999999999999963 123789999999999999999999999999999999987765457789999998889999
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEe
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF 184 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~ 184 (360)
.|.|||+......+.++..++..++.+......++++|+|+|++++|..++++. +...++.+++++.++++.++.+|++
T Consensus 174 ~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~~~~~dil~~l~~~~~v~~~~~ 252 (429)
T PRK02862 174 EFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYTDFGKEIIPEAIRDYKVQSYLF 252 (429)
T ss_pred EEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChhhhHHHHHHHHhccCcEEEEEe
Confidence 999999754434455666555555544333356899999999999998776653 2234677789999998999999999
Q ss_pred CCceeecCCHHHHHHHHHHhh-cCCCCCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEcceEEeeeEEecCeE
Q 018109 185 NDYWEDIGTIRSFFEANLALT-AHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSR 263 (360)
Q Consensus 185 ~g~w~digtp~~~~~a~~~~l-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ 263 (360)
++||.|+|||++|+++++.++ ...+....+.+.+++++.+.+.+|+.+.++.+.++.||++|.|.++.|.+|+||++|.
T Consensus 253 ~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~~~i~~~~i~~svi~~~~~ 332 (429)
T PRK02862 253 DGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIAEGCIIKNCSIHHSVLGIRSR 332 (429)
T ss_pred CCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEECCCCEECCcEEEEEEEeCCcE
Confidence 999999999999999999998 5555556667778889888999999888888899999999999778889999999999
Q ss_pred ECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeC
Q 018109 264 INANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRS 343 (360)
Q Consensus 264 i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~ 343 (360)
|++++.|.+|+++|+.|+.....-+.....|..++.||++|.|.+|+|+++|+||+++++.+...+.+..+...|+.|+.
T Consensus 333 Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (429)
T PRK02862 333 IESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRD 412 (429)
T ss_pred ECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEecCCCcccccccccceEeeC
Confidence 99999999999999655443322222233444459999999999999999999999999999988888777888999999
Q ss_pred CeEEEcCCcEeCCCccC
Q 018109 344 GVTVILKNSVITDGFVI 360 (360)
Q Consensus 344 ~~~~ig~~~~i~~g~~i 360 (360)
|+++|++++++++|++|
T Consensus 413 ~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 413 GIVVVVKNAVIPDGTVI 429 (429)
T ss_pred CEEEEcCCcCCCCCCCC
Confidence 98899999999999875
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=319.11 Aligned_cols=292 Identities=38% Similarity=0.601 Sum_probs=237.0
Q ss_pred CCcEEEeeCcccCCCC-----------------------CCccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeec
Q 018109 5 TGNSQVLAATQTPGEA-----------------------GKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM 61 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~-----------------------~~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~ 61 (360)
.|+++|++..+|.++. ..-|+.||+++.+..++..+ +.+|+|++||++|++
T Consensus 53 sGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~eteplgtaGpl~laR~~L~~~~------~~~ffVLnsDvi~~~ 126 (371)
T KOG1322|consen 53 SGITKIVLATQYNSESLNRHLSKAYGKELGVEILASTETEPLGTAGPLALARDFLWVFE------DAPFFVLNSDVICRM 126 (371)
T ss_pred CCCcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEeccCCCcccchHHHHHHHhhhcC------CCcEEEecCCeeecC
Confidence 5777777777776651 12244455555555544443 248999999999999
Q ss_pred CHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECC-CCceEEEEecCCccccccccccccccccccccccccCceee
Q 018109 62 DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIAS 140 (360)
Q Consensus 62 dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~-~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 140 (360)
||++|+++|++++++.|+++.++++ +++||++..|+ .|+|.+|.|||+... ++-++
T Consensus 127 p~~~~vqfH~~~gae~TI~~t~vde--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkin 183 (371)
T KOG1322|consen 127 PYKEMVQFHRAHGAEITIVVTKVDE--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKIN 183 (371)
T ss_pred CHHHHHHHHHhcCCceEEEEEeccC--ccccceEEEecCCCceeEehhCchhhh---------------------hcccc
Confidence 9999999999999999999999988 89999999997 799999999998432 46778
Q ss_pred eeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCce
Q 018109 141 MGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 220 (360)
Q Consensus 141 ~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v 220 (360)
+|+|+|+|++|++++ ..++ ++..+++|.++++.++++|.++|||+|||+|++|+++...+++..+ .
T Consensus 184 aGiYi~~~~vL~ri~--~~pt--SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~----------~ 249 (371)
T KOG1322|consen 184 AGIYILNPEVLDRIL--LRPT--SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLP----------K 249 (371)
T ss_pred ceEEEECHHHHhHhh--hccc--chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCc----------c
Confidence 999999999999875 2343 5888999999999999999999999999999999999877776553 3
Q ss_pred eccCCCCCCceecCceeec--eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcce
Q 018109 221 YTSRRNLPPSKIDDSKIVD--SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 298 (360)
Q Consensus 221 ~~~~~~~~~~~~~~~~i~~--~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (360)
+++.+..||+.+.++.+.+ ..+|++|.|++ +++||++|+|+.++.|.+++++++++++++..|++++.+|. +
T Consensus 250 ~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~----~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~--~ 323 (371)
T KOG1322|consen 250 YTSPRLLPGSKIVGNVLVDSIASIGENCSIGP----NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWN--V 323 (371)
T ss_pred cCCccccCCccccccEeeccccccCCccEECC----CceECCCcEecCceEEEeeEEEccceechhHHHHhhhcccc--c
Confidence 4556777777776666654 45677888876 69999999999999999999999999999999999887774 6
Q ss_pred EECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 299 GIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 299 ~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
.||.++ +|.++++||.++++.|...+.+. ++..++++.++|-+++.|
T Consensus 324 ~IG~~~-----~id~~a~lG~nV~V~d~~~vn~g----~~l~~ks~~~~v~~~~iI 370 (371)
T KOG1322|consen 324 PIGIWA-----RIDKNAVLGKNVIVADEDYVNEG----SGLPIKSGITVVLKPAII 370 (371)
T ss_pred cccCce-----EEecccEeccceEEecccccccc----eeEEeccceeeccccccc
Confidence 666666 77778888888888887776665 667788888877777765
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=310.77 Aligned_cols=325 Identities=23% Similarity=0.292 Sum_probs=263.3
Q ss_pred CcEEEeeCcccCCCCCC--------------ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHH
Q 018109 6 GNSQVLAATQTPGEAGK--------------RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQN 69 (360)
Q Consensus 6 g~~~i~~~~~~~~~~~~--------------~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~ 69 (360)
+.++++.+.+|.+++.+ ..++|||||+.+|.++|.+ ..++++||++||+ |+..+ |++|++.
T Consensus 44 ~~~~i~vVvGh~ae~V~~~~~~~~~v~~v~Q~eqlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~ 120 (460)
T COG1207 44 GPDDIVVVVGHGAEQVREALAERDDVEFVLQEEQLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAA 120 (460)
T ss_pred CcceEEEEEcCCHHHHHHHhccccCceEEEecccCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHh
Confidence 56678888888777332 2258999999999999943 1245799999999 77766 7889999
Q ss_pred HHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH
Q 018109 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 149 (360)
Q Consensus 70 h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~ 149 (360)
|.+.++.++++....++ |..||.+..+++|+|.+++|..+... +++. -..+|+|+|+|+.+
T Consensus 121 ~~~~~~~~tvLt~~~~d--P~GYGRIvr~~~g~V~~IVE~KDA~~---------------eek~--I~eiNtGiy~f~~~ 181 (460)
T COG1207 121 HPAHGAAATVLTAELDD--PTGYGRIVRDGNGEVTAIVEEKDASE---------------EEKQ--IKEINTGIYAFDGA 181 (460)
T ss_pred hhhcCCceEEEEEEcCC--CCCcceEEEcCCCcEEEEEEcCCCCH---------------HHhc--CcEEeeeEEEEcHH
Confidence 99999999999999988 88999999988899999999887643 2221 35889999999999
Q ss_pred HHHHHHHhhCCCCcchhhcccccccc-----cCceEEEEeCCc--eeecCCHHHHHHHHHHhhcC-------------CC
Q 018109 150 ILLNLLRWRFPTANDFGSEIIPASAN-----EQFLKAYLFNDY--WEDIGTIRSFFEANLALTAH-------------PP 209 (360)
Q Consensus 150 vl~~ll~~~~~~~~~~~~~~l~~~i~-----~~~I~~~~~~g~--w~digtp~~~~~a~~~~l~~-------------~~ 209 (360)
.|.++|.... ..+...|.||++.++ +.++.++..+++ ..-+++...|.++++.|.++ .|
T Consensus 182 ~L~~~L~~l~-nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP 260 (460)
T COG1207 182 ALLRALPKLS-NNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDP 260 (460)
T ss_pred HHHHHHHHhc-cccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCC
Confidence 8888887753 334567889998775 578999988754 57788888888888776543 15
Q ss_pred CCCccCCCCceeccCCCCC------------Ccee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEec---
Q 018109 210 MFSFYDATKPIYTSRRNLP------------PSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD--- 272 (360)
Q Consensus 210 ~~~~~~~~~~v~~~~~~~~------------~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~--- 272 (360)
.+.+++.+..+..++.|+| +|+| .++.|.|+.|++++.|. .+++.+|.||++|.|||+++|++
T Consensus 261 ~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~ 340 (460)
T COG1207 261 ATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAV 340 (460)
T ss_pred CeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCc
Confidence 6677777777777777777 4455 46777788888888888 48888899999999999988886
Q ss_pred ---eEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccccc-ccCCceEEeCCe---
Q 018109 273 ---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEAD-RSAEGFYIRSGV--- 345 (360)
Q Consensus 273 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~-~~~~~~~i~~~~--- 345 (360)
.+.+| ||||+|+ .-+++| +++++-++|+++.||++++||+|++..||++..++. +|||+++||+++
T Consensus 341 L~~~~hIG-NFVEvK~---a~ig~g---sKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LV 413 (460)
T COG1207 341 LGADVHIG-NFVEVKK---ATIGKG---SKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLV 413 (460)
T ss_pred ccCCCeEe-eeEEEec---ccccCC---ccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEE
Confidence 45566 6999884 235666 888899999999999999999999999999999988 899999999998
Q ss_pred --EEEcCCcEeCCCccC
Q 018109 346 --TVILKNSVITDGFVI 360 (360)
Q Consensus 346 --~~ig~~~~i~~g~~i 360 (360)
+.||++++|++||+|
T Consensus 414 APV~IGd~a~iaAGStI 430 (460)
T COG1207 414 APVTIGDGATIAAGSTI 430 (460)
T ss_pred eeEEecCCcEEcccceE
Confidence 478999999999986
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=313.91 Aligned_cols=278 Identities=37% Similarity=0.616 Sum_probs=234.6
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
|++|||+||++|.+++++ ..+++|||++||++++.|+.++++.|+++++++|+++..++.+.+.+||++.+|++++|
T Consensus 97 ~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~V 173 (380)
T PRK05293 97 WYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRI 173 (380)
T ss_pred ccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCcE
Confidence 468999999999999963 11368999999999999999999999999999998887765444788999999878899
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCC---CCcchhhccccccccc-Cce
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASANE-QFL 179 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~---~~~~~~~~~l~~~i~~-~~I 179 (360)
.+|.|||..+. ..+.++|+|+|++++|..++++... ...++..++++.++++ .++
T Consensus 174 ~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v 232 (380)
T PRK05293 174 VEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKL 232 (380)
T ss_pred EEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeE
Confidence 99999986432 4688999999999999777665321 2234556888888864 689
Q ss_pred EEEEeCCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCcee-cCceeeceEECCCCEEcceEEeeeEE
Q 018109 180 KAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVV 258 (360)
Q Consensus 180 ~~~~~~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~~~~i~~~~i 258 (360)
.+|+.+++|.|+|+|++|+++++.++...+...+++..+.+.+.+.+.+|+++ .++.+.++.|+++|.|.+ .+.+|+|
T Consensus 233 ~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~Ig~~~~I~~-~v~~s~i 311 (380)
T PRK05293 233 YAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVVYG-TVEHSVL 311 (380)
T ss_pred EEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEecCEECCCCEEcc-eecceEE
Confidence 99999999999999999999999999877666777788888888889999999 678889999999999974 5779999
Q ss_pred ecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCc
Q 018109 259 GIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 338 (360)
Q Consensus 259 g~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~ 338 (360)
|++|.|+++|.|.+++++.+ +.|+++|.|.+|+|+++++|++++.+.+...
T Consensus 312 g~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~---------- 362 (380)
T PRK05293 312 FQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIGDGVIIGGGKE---------- 362 (380)
T ss_pred cCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEECCCCEEcCCCc----------
Confidence 99999999999999998776 9999999999999999999999999987532
Q ss_pred eEEeCCeEEEcCCcEeCCCccC
Q 018109 339 FYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 339 ~~i~~~~~~ig~~~~i~~g~~i 360 (360)
...+||+++.|+++++|
T Consensus 363 -----~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 363 -----VITVIGENEVIGVGTVI 379 (380)
T ss_pred -----eeEEEeCCCCCCCCcEe
Confidence 13456777777777664
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=310.71 Aligned_cols=290 Identities=32% Similarity=0.596 Sum_probs=232.3
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
|++|||+||+++.+++++. ..++|||++||++++.|+.+++++|+++++++|+++..++.+.+..||++.+|++++|
T Consensus 97 ~~lGta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~g~v 173 (407)
T PRK00844 97 WYLGSADAIYQSLNLIEDE---DPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRI 173 (407)
T ss_pred cccCCHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCCCCE
Confidence 4689999999999999630 1246999999999999999999999999999999988765444788999999888999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhC---CCCcchhhcccccccccCceE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---PTANDFGSEIIPASANEQFLK 180 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~---~~~~~~~~~~l~~~i~~~~I~ 180 (360)
..|.|||..+... . . ...+.++++|+|+|++++|..++++.. ....++..++++.++++++++
T Consensus 174 ~~~~eKp~~~~~~--------~----~--~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~~v~ 239 (407)
T PRK00844 174 RGFLEKPADPPGL--------P----D--DPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAY 239 (407)
T ss_pred EEEEECCCCcccc--------c----C--CCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccCeEE
Confidence 9999999753210 0 0 001468999999999999866565421 123455668999999888999
Q ss_pred EEEe------------CCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCcee-cCc----eeeceEEC
Q 018109 181 AYLF------------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDS----KIVDSIIS 243 (360)
Q Consensus 181 ~~~~------------~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~----~i~~~~i~ 243 (360)
+|.+ ++||.|+|+|++|+++++.+|...+......+..++++.....+|+.+ .++ .+.++.|+
T Consensus 240 ~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 319 (407)
T PRK00844 240 VYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVS 319 (407)
T ss_pred EEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEc
Confidence 9976 599999999999999999999876655566667777777777777776 332 46789999
Q ss_pred CCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEE
Q 018109 244 HGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVII 323 (360)
Q Consensus 244 ~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~ 323 (360)
++|.|+++.|.+|+||++|.|+++|+|++++++.+ |.|+++|.|.+|+|+++|+|++++++
T Consensus 320 ~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~~~i~~~ii~~~~~i~~~~~i 380 (407)
T PRK00844 320 AGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRGAVVRRAILDKNVVVPPGATI 380 (407)
T ss_pred CCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCCCEEEeeEECCCCEECCCCEE
Confidence 99999978899999999999999999999987765 99999999999999999999999999
Q ss_pred ecCCCcccccccCCceEEe-CCeEEEcCCcEe
Q 018109 324 ANSEGIQEADRSAEGFYIR-SGVTVILKNSVI 354 (360)
Q Consensus 324 ~~~~~~~~~~~~~~~~~i~-~~~~~ig~~~~i 354 (360)
++.. ... +.+++|. .+.++|+++++|
T Consensus 381 ~~~~--~~~---~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 381 GVDL--EED---RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred CCCc--ccc---ccceEeccceEEEeCCCCCC
Confidence 8731 111 3356665 666787777654
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=308.45 Aligned_cols=292 Identities=32% Similarity=0.626 Sum_probs=233.3
Q ss_pred ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCc
Q 018109 23 RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 102 (360)
Q Consensus 23 ~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 102 (360)
+|++|||+|++++.+++++ ..+++|||++||++++.||.+++++|+++++++|+++.+++.+.+..||++.+|++++
T Consensus 108 ~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~~ 184 (425)
T PRK00725 108 NWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDR 184 (425)
T ss_pred ccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCCC
Confidence 4568999999999999963 1136899999999999999999999999999999998877544578999999988899
Q ss_pred eEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhC---CCCcchhhcccccccccCce
Q 018109 103 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---PTANDFGSEIIPASANEQFL 179 (360)
Q Consensus 103 V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~---~~~~~~~~~~l~~~i~~~~I 179 (360)
|+.|.|||..+.. . +.. ..+.++++|+|+|++++|..++++.. ....++..++++.+++++++
T Consensus 185 V~~~~EKp~~~~~--~----------~~~--~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v 250 (425)
T PRK00725 185 ITAFVEKPANPPA--M----------PGD--PDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKV 250 (425)
T ss_pred EEEEEECCCCccc--c----------ccC--ccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcE
Confidence 9999999864320 0 000 01468999999999998866665421 12345667899999998999
Q ss_pred EEEEeC-----------CceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCcee-c---C--ceeeceEE
Q 018109 180 KAYLFN-----------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-D---D--SKIVDSII 242 (360)
Q Consensus 180 ~~~~~~-----------g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~---~--~~i~~~~i 242 (360)
++|.++ +||.|+|+|++|+++++.++...+...+.+...++++.....+|+.+ . + +.+.+++|
T Consensus 251 ~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s~i 330 (425)
T PRK00725 251 YAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLV 330 (425)
T ss_pred EEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCCCCcceEEeCEE
Confidence 999985 69999999999999999999876655566666677776777777766 1 2 35679999
Q ss_pred CCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcE
Q 018109 243 SHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVI 322 (360)
Q Consensus 243 ~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~ 322 (360)
+++|.|.++.|.+|+||++|.|+++|.|.+++++.+ +.||++|.|.+|+|+++|+|+++++
T Consensus 331 ~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~~~~i~~~ii~~~~~i~~~~~ 391 (425)
T PRK00725 331 SGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGRSCRLRRCVIDRGCVIPEGMV 391 (425)
T ss_pred cCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECCCCEEeeEEECCCCEECCCCE
Confidence 999999888899999999999999999999998876 9999999999999999999999999
Q ss_pred EecCCCcccccccCCceEE-eCCeEEEcCCcEeC
Q 018109 323 IANSEGIQEADRSAEGFYI-RSGVTVILKNSVIT 355 (360)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~i-~~~~~~ig~~~~i~ 355 (360)
++......+ ++..| ..|.++|++++.+-
T Consensus 392 i~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~ 420 (425)
T PRK00725 392 IGEDPEEDA-----KRFRRSEEGIVLVTREMLDK 420 (425)
T ss_pred ECCCCCCCC-----ceeEecCccEEEECCCcccc
Confidence 976533222 12333 34667888876543
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=293.74 Aligned_cols=289 Identities=28% Similarity=0.449 Sum_probs=226.9
Q ss_pred CCCCcEEEeeCcccCCCCCCcc------------------ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHH
Q 018109 3 QLTGNSQVLAATQTPGEAGKRW------------------FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYM 64 (360)
Q Consensus 3 ~~~g~~~i~~~~~~~~~~~~~~------------------~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~ 64 (360)
+.+|+.+++++++|+++++.+| ++|||++|+++.+++.. ++|+|++||++++.|+.
T Consensus 43 ~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~~------~~f~v~~GDv~~~~dl~ 116 (358)
T COG1208 43 AAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGG------DDFLVLNGDVLTDLDLS 116 (358)
T ss_pred HHCCCcEEEEEeccchHHHHHHHhcccccCCceEEEecCCcCccHHHHHHHHHhcCC------CcEEEEECCeeeccCHH
Confidence 3589999999999999976554 37999999999999973 89999999999999999
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCC-CceEEEEecCCccccccccccccccccccccccccCceeeeeE
Q 018109 65 DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGV 143 (360)
Q Consensus 65 ~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~-g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GI 143 (360)
.++++|+++.+.++++...++. +..||++..+.+ ++|.+|.|||..... .+.++++|+
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~--~~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Gi 175 (358)
T COG1208 117 ELLEFHKKKGALATIALTRVLD--PSEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGI 175 (358)
T ss_pred HHHHHHHhccCccEEEEEecCC--CCcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEE
Confidence 9999999998889999988887 478999888744 599999999953110 257999999
Q ss_pred EEEeHHHHHHHHHhhCCCCcchhhcccccccccCc-eEEEEeCCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCc---
Q 018109 144 YLFKKEILLNLLRWRFPTANDFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKP--- 219 (360)
Q Consensus 144 yifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~-I~~~~~~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~--- 219 (360)
|+|+|++|+++ +.. ...++..+++|.+++.+. +++|.++++|+|+|+|++|+++++.++.......+......
T Consensus 176 yi~~~~v~~~i-~~~--~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~ 252 (358)
T COG1208 176 YIFDPEVFDYI-EKG--ERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVI 252 (358)
T ss_pred EEECHHHhhhc-ccC--CcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhcccccccccccccccc
Confidence 99999999843 332 244666789999998776 99999999999999999999999999964421111000000
Q ss_pred eeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcc
Q 018109 220 IYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVP 297 (360)
Q Consensus 220 v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
+.. +.+.+ +++|+++|.|+ ++.|. .++||++|.|+.++.|.+|+++.+
T Consensus 253 ~~~-~~i~g----------p~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~------------------- 302 (358)
T COG1208 253 IRS-AYIIG----------PVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDN------------------- 302 (358)
T ss_pred ccc-ceEeC----------CEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcC-------------------
Confidence 111 33333 55666666666 45554 699999999999999999999997
Q ss_pred eEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCcc
Q 018109 298 VGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 359 (360)
Q Consensus 298 ~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~ 359 (360)
|.|++++.|.+|+||.+|.||+++ . +.. +.+++++.+.+++ ++++++.+.++++
T Consensus 303 ~~i~~~~~i~~sIi~~~~~ig~~~-~-----i~d-~~~g~~~~i~~g~-~~~~~~~~~~~~~ 356 (358)
T COG1208 303 VVIGHGSYIGDSIIGENCKIGASL-I-----IGD-VVIGINSEILPGV-VVGPGSVVESGEI 356 (358)
T ss_pred CEECCCCEEeeeEEcCCcEECCce-e-----ecc-eEecCceEEcCce-EeCCCccccCccc
Confidence 999999999999999999999922 2 555 6666666666664 4577777776654
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=283.86 Aligned_cols=266 Identities=45% Similarity=0.796 Sum_probs=213.5
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
|++||+++++++.+++++ ..+++|+|++||++++.++.++++.|+++++++++++.+++.+.+..||++.+|++++|
T Consensus 91 ~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v 167 (361)
T TIGR02091 91 WYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRI 167 (361)
T ss_pred cccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECCCCCE
Confidence 458999999999999863 11368999999999999999999999998888898888776545678999999878899
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhC---CCCcchhhcccccccccCceE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---PTANDFGSEIIPASANEQFLK 180 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~---~~~~~~~~~~l~~~i~~~~I~ 180 (360)
..|.|||..+... ... ...+++++|+|+|+|++|..+++... ....++..++++.++++++++
T Consensus 168 ~~~~ekp~~~~~~------------~~~--~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~v~ 233 (361)
T TIGR02091 168 VDFEEKPANPPSI------------PGM--PDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQ 233 (361)
T ss_pred EEEEECCCCcccc------------ccc--ccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCceE
Confidence 9999998543210 000 01238999999999999866665532 123355668899999889999
Q ss_pred EEEeCCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceecc-CCCCCCcee-cCceeeceEECCCCEEcceEEeeeEE
Q 018109 181 AYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTS-RRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVV 258 (360)
Q Consensus 181 ~~~~~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~-~~~~~~~~~-~~~~i~~~~i~~~~~i~~~~i~~~~i 258 (360)
+|.++++|.|+|||++|+++++.++.+.+..........+... ..+.+++++ .++.+.++.||++|.|+++.+.+++|
T Consensus 234 ~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~I~~~~v~~s~i 313 (361)
T TIGR02091 234 AYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGCIISGATVSHSVL 313 (361)
T ss_pred EEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECCCCEECCCEEEccEE
Confidence 9999999999999999999999999876544344444555433 345666677 44577899999999999658889999
Q ss_pred ecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEec
Q 018109 259 GIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 259 g~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~ 325 (360)
|++|.|+++|+|.+++++.+ +.||++|.|.+|+||+++.|++++.++|
T Consensus 314 ~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 314 GIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 99999999999999888775 8999999999999999999999999875
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=278.23 Aligned_cols=280 Identities=21% Similarity=0.383 Sum_probs=218.8
Q ss_pred CCCCcEEEeeCcccCCC-CCCcc-------------------------c--cccHHHHHHHhHhhcCCCCCCCCeEEEEc
Q 018109 3 QLTGNSQVLAATQTPGE-AGKRW-------------------------F--QGTADAVRQFHWLFEDPRNKVIEDVLILS 54 (360)
Q Consensus 3 ~~~g~~~i~~~~~~~~~-~~~~~-------------------------~--lGTa~al~~a~~~i~~~~~~~~~~fLVv~ 54 (360)
..+|+++|+++.+|+++ ++.+| . .|++++++++++++++ ..+++|||++
T Consensus 45 ~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~---~~~~~~lvln 121 (369)
T TIGR02092 45 VNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKR---STSEYTVVLN 121 (369)
T ss_pred hccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccccCcEEEEeccCCCCcccChHHHHHHHHHHHHh---CCCCEEEEEC
Confidence 35789999999999765 33211 2 2666779899998852 0137899999
Q ss_pred CceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCccc-EEEECCCCceEEEEecCCcccccccccccccccccccccc
Q 018109 55 GDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFG-LMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAE 133 (360)
Q Consensus 55 gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g-~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~ 133 (360)
||+++++||.+++++|+++++++|+++.+++.+.+..|| .+..++++++..+.+++....
T Consensus 122 GD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~------------------- 182 (369)
T TIGR02092 122 SHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVKSIGQNLNPEE------------------- 182 (369)
T ss_pred CCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCCCEEeccccCCCCC-------------------
Confidence 999999999999999999999999999887643356785 456766678887754332211
Q ss_pred ccCceeeeeEEEEeHHHHHHHHHhhCCC-CcchhhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhhcCCCCCC
Q 018109 134 EKPYIASMGVYLFKKEILLNLLRWRFPT-ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFS 212 (360)
Q Consensus 134 ~~~~~~~~GIyifs~~vl~~ll~~~~~~-~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~~~~~ 212 (360)
...+++|+|+|++++|..++++..+. ...+..++++.++++.++++|..+++|.|+|||++|+++++++|+.+....
T Consensus 183 --~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~ 260 (369)
T TIGR02092 183 --EENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQS 260 (369)
T ss_pred --cceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhh
Confidence 24578999999999886666543221 223345788888878899999999999999999999999999998764322
Q ss_pred cc-CCCCceeccCCCCCCcee-cCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhh
Q 018109 213 FY-DATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL 290 (360)
Q Consensus 213 ~~-~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 290 (360)
.. ....+++....+.+|+++ +++.+.+|.||++|.|+ +.+.+|+|+++|.|+++|.|.+++++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~------------ 327 (369)
T TIGR02092 261 LFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR------------ 327 (369)
T ss_pred hcCCCCCceeeccCCCCCcEEcCCCEEEEeEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC------------
Confidence 22 223345555556789999 67888999999999997 5688999999999999999999998876
Q ss_pred hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecC
Q 018109 291 LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 291 ~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~ 326 (360)
+.|++++.+.+|+||++++|++++.+.+.
T Consensus 328 -------~~I~~~~~i~~~ii~~~~~v~~~~~~~~~ 356 (369)
T TIGR02092 328 -------TVIGEGAHLENVIIDKDVVIEPNVKIAGT 356 (369)
T ss_pred -------CEECCCCEEEEEEECCCCEECCCCEeCCC
Confidence 99999999999999999999999999765
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=276.98 Aligned_cols=333 Identities=20% Similarity=0.256 Sum_probs=220.0
Q ss_pred CCCcEEEeeCcccCCCCC--------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHH
Q 018109 4 LTGNSQVLAATQTPGEAG--------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFV 67 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~--------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll 67 (360)
.+|+.+++++.++.++.. ++..+||+++|+++++++++ ..++|+|++||. +.+.++++++
T Consensus 43 ~~gi~~iiiv~~~~~~~i~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~ 118 (459)
T PRK14355 43 EAGAGRIVLVVGHQAEKVREHFAGDGDVSFALQEEQLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGML 118 (459)
T ss_pred hcCCCeEEEEECCCHHHHHHHhccCCceEEEecCCCCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHH
Confidence 357888888887754421 23357999999999999963 136899999998 5677899999
Q ss_pred HHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEe
Q 018109 68 QNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK 147 (360)
Q Consensus 68 ~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs 147 (360)
+.|++++++++++..+.++ +..||.+.+|++++|..+.|||.....+ ..+.++++|+|+|+
T Consensus 119 ~~~~~~~~~~~v~~~~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~ 179 (459)
T PRK14355 119 AAHRATGAAVTVLTARLEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVE 179 (459)
T ss_pred HHHHhcCCcEEEEEEEcCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEe
Confidence 9999888888888877766 5679998888888999999987432110 01468899999999
Q ss_pred HHHHHHHHHhhCCC---Ccchhhccccccccc-CceEEEEeCCc--eeecCCHHHHHHHHHHhhcCC------CCCCccC
Q 018109 148 KEILLNLLRWRFPT---ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYD 215 (360)
Q Consensus 148 ~~vl~~ll~~~~~~---~~~~~~~~l~~~i~~-~~I~~~~~~g~--w~digtp~~~~~a~~~~l~~~------~~~~~~~ 215 (360)
+++|..+++...+. ......+.++.++++ .++.+|+++++ |+|+|+|++|+++++.++... ....+++
T Consensus 180 ~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~ 259 (459)
T PRK14355 180 AAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLID 259 (459)
T ss_pred HHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC
Confidence 99765656543221 112235677877765 57999999887 899999999999987655421 1112334
Q ss_pred CCC-ceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchh-HHHHhh
Q 018109 216 ATK-PIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETD-AEVASL 290 (360)
Q Consensus 216 ~~~-~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~~~ 290 (360)
+.. .+...+.|++++.+ +++.|. ++.||++|.|+ +++|.+++||++|.|++++.+.++++ +++..... ..+..+
T Consensus 260 ~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i-~~~~~ig~~~~i~~~ 338 (459)
T PRK14355 260 PETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVV-GDDVAIGPMAHLRPG 338 (459)
T ss_pred CCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEE-CCCCEECCCCEECCC
Confidence 432 34444555555555 334443 56666666666 66666666666666666666654433 22211110 111110
Q ss_pred --hhCCC--------cceEECCC------CeEeeeEecCCCEECCCcEEecCCCcccc-cccCCceEEeCCe-----EEE
Q 018109 291 --LAEGR--------VPVGIGEN------TKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGV-----TVI 348 (360)
Q Consensus 291 --~~~~~--------~~~~ig~~------~~i~~~~i~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~-----~~i 348 (360)
++++. ..+.||.+ +++.+++||++|.||+++++.++++...+ ..|||+++|+.++ +.|
T Consensus 339 ~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~i 418 (459)
T PRK14355 339 TELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTV 418 (459)
T ss_pred CEeCCCCEECCCccccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEE
Confidence 11110 00222322 33456788999999999998887766554 4788888888887 367
Q ss_pred cCCcEeCCCccC
Q 018109 349 LKNSVITDGFVI 360 (360)
Q Consensus 349 g~~~~i~~g~~i 360 (360)
|+++.|+||++|
T Consensus 419 g~~~~i~a~s~v 430 (459)
T PRK14355 419 GRNSLIAAGTTV 430 (459)
T ss_pred CCCCEECCCCEE
Confidence 888888888865
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=275.12 Aligned_cols=331 Identities=16% Similarity=0.207 Sum_probs=225.9
Q ss_pred CCcEEEeeCcccCCCCC---------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHH
Q 018109 5 TGNSQVLAATQTPGEAG---------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFV 67 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~---------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll 67 (360)
.|+.+++++.++..++. +++.+||+++++++..++.+ ..+++|+|++||. +...++++|+
T Consensus 45 ~g~~~iivvv~~~~~~i~~~~~~~~~~~~~~~~~~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li 121 (482)
T PRK14352 45 LAPQHLVVVVGHDRERVAPAVAELAPEVDIAVQDEQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLV 121 (482)
T ss_pred cCCCcEEEEECCCHHHHHHHhhccCCccEEEeCCCCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHH
Confidence 46667766665543211 23457999999999998853 1236799999998 3466799999
Q ss_pred HHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEe
Q 018109 68 QNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK 147 (360)
Q Consensus 68 ~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs 147 (360)
+.|+++++.++++..+..+ +..||.+..+++++|.++.|||+....+ ....++++|+|+|+
T Consensus 122 ~~~~~~~~~~~v~~~~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~ 182 (482)
T PRK14352 122 ATHTAEGNAVTVLTTTLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFD 182 (482)
T ss_pred HHHHhcCCeEEEEEeecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEE
Confidence 9999888888888777766 6789988888889999999998753210 01357899999999
Q ss_pred HHHHHHHHHhhCCCC---cchhhccccccccc-CceEEEEeCCceeecCCHHHH------HHHHHHhhcCC---------
Q 018109 148 KEILLNLLRWRFPTA---NDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSF------FEANLALTAHP--------- 208 (360)
Q Consensus 148 ~~vl~~ll~~~~~~~---~~~~~~~l~~~i~~-~~I~~~~~~g~w~digtp~~~------~~a~~~~l~~~--------- 208 (360)
+++|..++++..... ..+..++++.+++. .++++|+++++|.|+|+++.+ ..+++.++...
T Consensus 183 ~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 262 (482)
T PRK14352 183 AAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVD 262 (482)
T ss_pred HHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC
Confidence 999977665543211 12235677777775 589999999999999999887 55555544332
Q ss_pred CCCCccC------------CCCceeccCCCCCCcee-cCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEE
Q 018109 209 PMFSFYD------------ATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMM 275 (360)
Q Consensus 209 ~~~~~~~------------~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~ 275 (360)
+...+++ +.+.+...+.|+++|.+ .++.|.+++|+++|.|.++.+.+++||+++.|++++.+...++
T Consensus 263 ~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~v 342 (482)
T PRK14352 263 PATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTV 342 (482)
T ss_pred CCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcE
Confidence 1112222 22333333444455555 3556666777777777655566777777777777777766556
Q ss_pred ECCcccchh-HHHHhh-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccc-cccCCceEEeCCeE-----E
Q 018109 276 LGADFYETD-AEVASL-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVT-----V 347 (360)
Q Consensus 276 ~~~~~~~~~-~~~~~~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~-----~ 347 (360)
+|++-.... +.++.. +.++ +.|++.+.+.+++||++|+||+++++.++....++ ..|||+++|+.+++ .
T Consensus 343 Ig~~~~ig~~~~~~~~~I~~~---~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~ 419 (482)
T PRK14352 343 LGEEGKLGAFVETKNATIGRG---TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVT 419 (482)
T ss_pred EcCCCEECCcEEEcccEECCC---cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCE
Confidence 554311111 111111 2222 66666667788999999999999999887655444 48888888887775 7
Q ss_pred EcCCcEeCCCccC
Q 018109 348 ILKNSVITDGFVI 360 (360)
Q Consensus 348 ig~~~~i~~g~~i 360 (360)
||+++.||+|++|
T Consensus 420 Ig~~~~igags~v 432 (482)
T PRK14352 420 VGDGAYTGAGTVI 432 (482)
T ss_pred ECCCcEECCCCEE
Confidence 7899999999864
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=274.98 Aligned_cols=329 Identities=22% Similarity=0.258 Sum_probs=223.7
Q ss_pred CCCcEEEeeCcccCCCCC-------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHH
Q 018109 4 LTGNSQVLAATQTPGEAG-------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQ 68 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~-------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~ 68 (360)
.+|+++++++.++..+.. +++++||+++++.+.++++. .+++|+|++||. +.+.++++|++
T Consensus 47 ~~gi~~ivvv~~~~~~~i~~~~~~~~i~~v~~~~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~ 122 (481)
T PRK14358 47 DLGARKIVVVTGHGAEQVEAALQGSGVAFARQEQQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVA 122 (481)
T ss_pred hCCCCeEEEEeCCCHHHHHHHhccCCcEEecCCCcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHH
Confidence 358888888888754422 23467999999999998852 135799999998 55777999999
Q ss_pred HHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeH
Q 018109 69 NHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKK 148 (360)
Q Consensus 69 ~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~ 148 (360)
+|+++++++|+++.++++ +++||++..|++++|.+|.|||+.+..+ ....++++|+|+|++
T Consensus 123 ~~~~~~~~~ti~~~~~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~ 183 (481)
T PRK14358 123 DHRAQGSAMTILTGELPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDA 183 (481)
T ss_pred HHHhcCCeEEEEEEEcCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEch
Confidence 999999999999888876 5679999998889999999998753210 013468999999996
Q ss_pred HHHHHHHHhhCC----CCcchhhccccccccc-CceEEEEeCCceeecCCHHHHHHHHHH-hhcCC--------------
Q 018109 149 EILLNLLRWRFP----TANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLA-LTAHP-------------- 208 (360)
Q Consensus 149 ~vl~~ll~~~~~----~~~~~~~~~l~~~i~~-~~I~~~~~~g~w~digtp~~~~~a~~~-~l~~~-------------- 208 (360)
++++ +++...+ .... ..++++.++++ .++.+|+++++|..++....+..+++. +++..
T Consensus 184 ~~~~-~~~~i~~~~~~ge~~-l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 261 (481)
T PRK14358 184 RAPE-LARRIGNDNKAGEYY-LTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQD 261 (481)
T ss_pred HHHH-HHHhcCCCccCCeEE-HHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEec
Confidence 6532 2333211 1222 34677777765 579999999888887776656444432 22110
Q ss_pred CCCC------------ccCCCCceeccCCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceE
Q 018109 209 PMFS------------FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTM 274 (360)
Q Consensus 209 ~~~~------------~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~ 274 (360)
+... .+++.+.+...+.|++++.| .+|.|.+++|+++|.|+ ++.+.+++||+++.|++++.+...+
T Consensus 262 ~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~ 341 (481)
T PRK14358 262 PGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGT 341 (481)
T ss_pred CCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCc
Confidence 1111 11222222223333444444 34566677777777777 6777777777777777777777666
Q ss_pred EECCcccchh-HHHHhh-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccccc-ccCCceEEeCCeE-----
Q 018109 275 MLGADFYETD-AEVASL-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEAD-RSAEGFYIRSGVT----- 346 (360)
Q Consensus 275 ~~~~~~~~~~-~~~~~~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~-~~~~~~~i~~~~~----- 346 (360)
++|++-.+.. +++.+. +..| +++|+.+.+.+++||++|.||.++++.|+....++. .||++++|+.+++
T Consensus 342 ~Ig~~~~Ig~~~~i~~~~i~~~---~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~ 418 (481)
T PRK14358 342 VLGEGVHIGNFVETKNARLDAG---VKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPR 418 (481)
T ss_pred EECCCCEECCCEEECCceecCC---cccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCc
Confidence 6665533322 222221 2333 556666666789999999999999999987666654 8889988887773
Q ss_pred EEcCCcEeCCCccC
Q 018109 347 VILKNSVITDGFVI 360 (360)
Q Consensus 347 ~ig~~~~i~~g~~i 360 (360)
+||+++.|++|++|
T Consensus 419 ~Ig~~~~i~~gs~v 432 (481)
T PRK14358 419 VVGDAAFIAAGSAV 432 (481)
T ss_pred EECCCCEECCCCEE
Confidence 67889999988864
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=256.57 Aligned_cols=230 Identities=21% Similarity=0.316 Sum_probs=159.7
Q ss_pred CCcEEEeeCccc-CCCCC------------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHH
Q 018109 5 TGNSQVLAATQT-PGEAG------------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65 (360)
Q Consensus 5 ~g~~~i~~~~~~-~~~~~------------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ 65 (360)
.|+++++++.++ ..+.. +++.+||+++++++.+++++ ++|++++||.+++.++.+
T Consensus 43 ~gi~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~al~~a~~~l~~------~~~li~~gD~~~~~~l~~ 116 (353)
T TIGR01208 43 AGITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQGEPLGLAHAVYTARDFLGD------DDFVVYLGDNLIQDGISR 116 (353)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcccccCceEEEEECCCCCCHHHHHHHHHHhcCC------CCEEEEECCeecCccHHH
Confidence 577788777777 33210 22358999999999999863 789999999999999999
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEE
Q 018109 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 145 (360)
Q Consensus 66 ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyi 145 (360)
++++|+++++++++++.+.++ +..||++..+++++|.+|.|||..+. +.+.++|+|+
T Consensus 117 l~~~~~~~~~d~ti~~~~~~~--~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~ 173 (353)
T TIGR01208 117 FVKSFEEKDYDALILLTKVRD--PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYM 173 (353)
T ss_pred HHHHHHhcCCCcEEEEEECCC--hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEE
Confidence 999999999999999988776 57899888875678999999987542 4578999999
Q ss_pred EeHHHHHHHHHhhCCC---Ccchhhccccccccc-CceEEEEeCCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCcee
Q 018109 146 FKKEILLNLLRWRFPT---ANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIY 221 (360)
Q Consensus 146 fs~~vl~~ll~~~~~~---~~~~~~~~l~~~i~~-~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~ 221 (360)
|++.+++. +++..+. ... ..++++.++++ .++.+|.++++|.|+|||++|+++++.++.+... .+ . .+.
T Consensus 174 ~~~~l~~~-l~~~~~~~~~e~~-l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~-~~-~---~i~ 246 (353)
T TIGR01208 174 FRPLIFEA-IKNIKPSWRGELE-ITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER-EV-Q---GVD 246 (353)
T ss_pred ECHHHHHH-HHhcCCCCCCcEE-HHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc-cc-C---CcC
Confidence 99987765 4543221 112 34677777765 5799999999999999999999999999985421 11 0 134
Q ss_pred ccCCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEE
Q 018109 222 TSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHL 270 (360)
Q Consensus 222 ~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i 270 (360)
+.+.+.+|+.+ +++.|.++.|+++|.|+ ++.|.+++|+++|.|+++|.|
T Consensus 247 ~~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i 297 (353)
T TIGR01208 247 DESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVI 297 (353)
T ss_pred CCCEEcCCEEECCCCEEeCCEEECCcEECCCCEEcCcEECCCCEECCCCEE
Confidence 44445555544 33444444443333333 333333344444444444433
|
Alternate name: dTDP-D-glucose synthase |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=267.37 Aligned_cols=326 Identities=19% Similarity=0.220 Sum_probs=223.7
Q ss_pred CCcEEEeeCcccCCCCC-------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHH
Q 018109 5 TGNSQVLAATQTPGEAG-------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQN 69 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~-------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~ 69 (360)
.|+.+++++.++..+.. ++..+||+++++.+..++.+ +++|++++||. +.+.++.++++.
T Consensus 46 ~gi~~i~vv~~~~~~~i~~~~~~~~~~~i~~~~~~Gt~~al~~a~~~l~~-----~~~vlV~~gD~P~i~~~~i~~l~~~ 120 (456)
T PRK09451 46 LGAQHVHLVYGHGGDLLKQTLADEPLNWVLQAEQLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLRDA 120 (456)
T ss_pred cCCCcEEEEECCCHHHHHHhhccCCcEEEECCCCCCcHHHHHHHHHhhcc-----CCcEEEEeCCcccCCHHHHHHHHHH
Confidence 47778887777643321 12257999999999998853 47899999998 567789999998
Q ss_pred HHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH
Q 018109 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 149 (360)
Q Consensus 70 h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~ 149 (360)
|++.+ +++++.++++ +..||++.. ++++|.+|.|||.....+ ....++++|+|+|+++
T Consensus 121 ~~~~~--~~i~~~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~ 178 (456)
T PRK09451 121 KPQGG--IGLLTVKLDN--PTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGA 178 (456)
T ss_pred hhcCC--EEEEEEEcCC--CCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHH
Confidence 86544 4566666665 567998754 478999999998642210 0135789999999999
Q ss_pred HHHHHHHhhCCC---Ccchhhccccccccc-CceEEEE------eCCc--eeecCCHHHHHHHHH--HhhcCC----CC-
Q 018109 150 ILLNLLRWRFPT---ANDFGSEIIPASANE-QFLKAYL------FNDY--WEDIGTIRSFFEANL--ALTAHP----PM- 210 (360)
Q Consensus 150 vl~~ll~~~~~~---~~~~~~~~l~~~i~~-~~I~~~~------~~g~--w~digtp~~~~~a~~--~~l~~~----~~- 210 (360)
.|.++++...+. ...+..++++.++++ .++.+|. +.|| |.|++++++|++++. .++... ++
T Consensus 179 ~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~ 258 (456)
T PRK09451 179 DLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPA 258 (456)
T ss_pred HHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCC
Confidence 887766653221 112345788888875 6899986 3566 788999999999874 232211 11
Q ss_pred ------------CCccCCCCceeccCCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEE
Q 018109 211 ------------FSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMML 276 (360)
Q Consensus 211 ------------~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~ 276 (360)
-..+++.+.+...+.+++++.| .++.|.++.|+++|.|+ ++.+.+++||+++.|++++.|...+.+
T Consensus 259 ~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i 338 (456)
T PRK09451 259 RFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAEL 338 (456)
T ss_pred EEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEE
Confidence 1133444555555566666666 56777788888888888 777777778877777777777654444
Q ss_pred CCcccchh-HHHHhh-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccc-ccccCCceEEeCCeE-----EE
Q 018109 277 GADFYETD-AEVASL-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVT-----VI 348 (360)
Q Consensus 277 ~~~~~~~~-~~~~~~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-----~i 348 (360)
+++-...+ +++... +.+| +.+++.+.+++|+||++|.||+++++.+.++..+ ..+|+|+++|+.+++ .|
T Consensus 339 ~~~~~ig~~~~i~~~~i~~~---~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~i 415 (456)
T PRK09451 339 AEGAHVGNFVEMKKARLGKG---SKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTV 415 (456)
T ss_pred CCCceeccceeeeceeeCCC---CccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEE
Confidence 44311111 222211 3333 5556666667889999999999999988776555 358899999887774 66
Q ss_pred cCCcEeCCCccC
Q 018109 349 LKNSVITDGFVI 360 (360)
Q Consensus 349 g~~~~i~~g~~i 360 (360)
|+++.|++|++|
T Consensus 416 g~~~~i~~gs~v 427 (456)
T PRK09451 416 GKGATIGAGTTV 427 (456)
T ss_pred CCCCEECCCCEE
Confidence 788888888764
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-31 Score=263.39 Aligned_cols=328 Identities=20% Similarity=0.239 Sum_probs=220.2
Q ss_pred CCCcEEEeeCcccCCCCCC-------------ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHH
Q 018109 4 LTGNSQVLAATQTPGEAGK-------------RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQ 68 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~~-------------~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~ 68 (360)
..|+.+++++.++..+... +.++||+++++++.+++++ .++|++++||. +...+++++++
T Consensus 40 ~~g~~~iiiv~~~~~~~i~~~~~~~~i~~~~~~~~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~ 114 (451)
T TIGR01173 40 ALGPQKIHVVYGHGAEQVRKALANRDVNWVLQAEQLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLE 114 (451)
T ss_pred hCCCCeEEEEECCCHHHHHHHhcCCCcEEEEcCCCCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHH
Confidence 3567777777766543211 1246999999999999863 36899999998 45667899999
Q ss_pred HHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeH
Q 018109 69 NHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKK 148 (360)
Q Consensus 69 ~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~ 148 (360)
.|++. .+++++.++++ +..||.+..|++++|..+.|||...... ....++++|+|+|++
T Consensus 115 ~~~~~--~~~~~~~~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~ 173 (451)
T TIGR01173 115 AHRQN--GITLLTAKLPD--PTGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDG 173 (451)
T ss_pred HHhhC--CEEEEEEecCC--CCCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeH
Confidence 98764 36677776654 5679998888788999999997643210 013578999999999
Q ss_pred HHHHHHHHhhCCC---Ccchhhccccccccc-CceEEEEeCCc--eeecCCHHHHHHHHHHhhcCC-------------C
Q 018109 149 EILLNLLRWRFPT---ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP-------------P 209 (360)
Q Consensus 149 ~vl~~ll~~~~~~---~~~~~~~~l~~~i~~-~~I~~~~~~g~--w~digtp~~~~~a~~~~l~~~-------------~ 209 (360)
++|..++++.... ...+..++++.++++ .++.+|+++++ |.++++|+++.+++..+..+. +
T Consensus 174 ~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (451)
T TIGR01173 174 AALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDP 253 (451)
T ss_pred HHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecC
Confidence 9876666553221 111234667777765 57999999887 899999999988766543210 1
Q ss_pred CC------------CccCCCCceeccCCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEE
Q 018109 210 MF------------SFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMM 275 (360)
Q Consensus 210 ~~------------~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~ 275 (360)
.. ..+++.+.+...+.|++++.| .++.+.++.|+++|.|+ ++.+.+++||++|.|+++++|.+.++
T Consensus 254 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ 333 (451)
T TIGR01173 254 ARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSV 333 (451)
T ss_pred CeEEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCE
Confidence 00 122333334344445555555 45666778888888888 77777778888888877777775545
Q ss_pred ECCcccchh-HHHHh-hhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccc-cccCCceEEeCCeE-----E
Q 018109 276 LGADFYETD-AEVAS-LLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVT-----V 347 (360)
Q Consensus 276 ~~~~~~~~~-~~~~~-~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~-----~ 347 (360)
++++-.+.. +.++. .+++| +.|++.+.+.+|.||++|.||+++++.+.+...++ ..|+|+++|+.+++ .
T Consensus 334 i~~~~~Ig~~~~i~~~~ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ 410 (451)
T TIGR01173 334 LGAGVHIGNFVETKNARIGKG---SKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVK 410 (451)
T ss_pred ECCCcEEccceeecCcEECCC---cEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcE
Confidence 554311111 11111 12222 44455555567888899999999988887665554 58888888887763 6
Q ss_pred EcCCcEeCCCccC
Q 018109 348 ILKNSVITDGFVI 360 (360)
Q Consensus 348 ig~~~~i~~g~~i 360 (360)
||+++.|++|++|
T Consensus 411 ig~~~~i~~g~~v 423 (451)
T TIGR01173 411 VGDGATIAAGSTV 423 (451)
T ss_pred ECCCCEEccCCEE
Confidence 7899999999875
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=253.51 Aligned_cols=297 Identities=24% Similarity=0.336 Sum_probs=220.0
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
++||+++++++.. . .++||+++||..+. ..+.++.+.+.++++++++.++++ +..||.+..+ +++|.
T Consensus 79 ~~gt~~al~~~~~--~------~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~--~~~~g~v~~d-~g~v~ 145 (430)
T PRK14359 79 YPGTGGALMGIEP--K------HERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLAD--PKGYGRVVIE-NGQVK 145 (430)
T ss_pred CCCcHHHHhhccc--C------CCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCC--CccCcEEEEc-CCeEE
Confidence 4799999987532 1 37999999998331 234555566677888888888776 5679987775 68999
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC---Ccchhhcccccccc-cCceE
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASAN-EQFLK 180 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~---~~~~~~~~l~~~i~-~~~I~ 180 (360)
.+.|+|...... ....+.++|+|+|++++|.++++..... ...+..+.++.+++ +.++.
T Consensus 146 ~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~ 208 (430)
T PRK14359 146 KIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIK 208 (430)
T ss_pred EEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEE
Confidence 999988542100 0135789999999999998765542211 11122345555565 47899
Q ss_pred EEEeC-CceeecCCHHHHHHHHHHhhcCC-------------CCCCccCCCCceeccCCCCCCcee-cCceeeceEECCC
Q 018109 181 AYLFN-DYWEDIGTIRSFFEANLALTAHP-------------PMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHG 245 (360)
Q Consensus 181 ~~~~~-g~w~digtp~~~~~a~~~~l~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~ 245 (360)
+|..+ ++|.|+++|++|.+++..++.+. +...++++++.+...+.+++++.| .++.+.++.|+++
T Consensus 209 ~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~ 288 (430)
T PRK14359 209 AVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIENSHIKAH 288 (430)
T ss_pred EEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEEeeEECCC
Confidence 99986 68999999999999986655331 123345666677777788888888 6778889999999
Q ss_pred CEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEec
Q 018109 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 246 ~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~ 325 (360)
|.|.++.+.+++||+++.|++++.|.++ ++|+ +++ |..++.+| ++||+++.|.+|+||++|.||+++++.+
T Consensus 289 ~~I~~~~i~~~~ig~~~~i~~~~~i~~~-~ig~-~~~----i~~~~~~~---~~i~~~~~i~d~~Ig~~~~ig~~~~~~~ 359 (430)
T PRK14359 289 SVIEESIIENSDVGPLAHIRPKSEIKNT-HIGN-FVE----TKNAKLNG---VKAGHLSYLGDCEIDEGTNIGAGTITCN 359 (430)
T ss_pred CEEeccEEeCCEECCCCEECCCcEEecc-EEcC-cEE----EcccEecc---ccccccccccCCEECCCCEECCCceEcc
Confidence 9998888899999999999999999754 5564 233 33333344 8999999999999999999999999998
Q ss_pred CCCcccc-cccCCceEEeCCeE-----EEcCCcEeCCCccC
Q 018109 326 SEGIQEA-DRSAEGFYIRSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 326 ~~~~~~~-~~~~~~~~i~~~~~-----~ig~~~~i~~g~~i 360 (360)
+.+..++ ..|||+++||.+++ +||+++.||+|++|
T Consensus 360 ~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v 400 (430)
T PRK14359 360 YDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTV 400 (430)
T ss_pred ccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 8766654 47888888888873 77889999998875
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=254.37 Aligned_cols=305 Identities=22% Similarity=0.266 Sum_probs=203.2
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCC
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 101 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g 101 (360)
..+||+++++++..++++ +++|++++||. +.+.+++++++.|+++++++|+++.++++ +..||.+..+ ++
T Consensus 71 ~~~g~~~ai~~a~~~l~~-----~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~--~~~~g~v~~d-~g 142 (448)
T PRK14357 71 EQLGTAHAVMCARDFIEP-----GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLED--PTGYGRIIRD-GG 142 (448)
T ss_pred CCCChHHHHHHHHHhcCc-----CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCC--CCCcEEEEEc-CC
Confidence 357999999999999863 47999999997 67788999999999999999999988876 6789998886 67
Q ss_pred ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCC---cchhhcccccccccCc
Q 018109 102 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA---NDFGSEIIPASANEQF 178 (360)
Q Consensus 102 ~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~---~~~~~~~l~~~i~~~~ 178 (360)
++ .+.|||..+... ...+++++|+|+|++++|.+++++..+.. .....++++.+ .+
T Consensus 143 ~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~---~~ 201 (448)
T PRK14357 143 KY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA---EK 201 (448)
T ss_pred eE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh---hh
Confidence 88 888876533210 01357899999999998877665432211 01112444444 35
Q ss_pred eEEEEeCCc--eeecCCHHHHHHHHHHhhcC--------C-----CCCCccCCCCceeccCCCCC------------Cce
Q 018109 179 LKAYLFNDY--WEDIGTIRSFFEANLALTAH--------P-----PMFSFYDATKPIYTSRRNLP------------PSK 231 (360)
Q Consensus 179 I~~~~~~g~--w~digtp~~~~~a~~~~l~~--------~-----~~~~~~~~~~~v~~~~~~~~------------~~~ 231 (360)
+.+|..+++ |.++++|+++..+...+... . +...++++.+.++.++.+.| +|.
T Consensus 202 v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~ 281 (448)
T PRK14357 202 VRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCE 281 (448)
T ss_pred eeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcE
Confidence 888888888 56677999988776544211 0 11123444444444444433 333
Q ss_pred e-cCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchh-HHHHh-hhhCCCcceEECCCCeEee
Q 018109 232 I-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETD-AEVAS-LLAEGRVPVGIGENTKIKE 308 (360)
Q Consensus 232 ~-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~ig~~~~i~~ 308 (360)
+ .++.+.+++|+++|.|..+.+.+++|++++.|++++.|.+.+++|++-...+ +.+.+ .+++| +.+.+.+.+.+
T Consensus 282 I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~---~~~~~~~~~~~ 358 (448)
T PRK14357 282 IGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGEN---TKAQHLTYLGD 358 (448)
T ss_pred ECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCC---cCccccccccC
Confidence 4 3345555667777776655566777888888888877766556665411111 11111 12222 33444445567
Q ss_pred eEecCCCEECCCcEEecCCCcccc-cccCCceEEeCCe-----EEEcCCcEeCCCccC
Q 018109 309 CIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGV-----TVILKNSVITDGFVI 360 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~-----~~ig~~~~i~~g~~i 360 (360)
++||++|.||+++++.++....++ ++|+|+++|+.++ +.||+++.||+|++|
T Consensus 359 ~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 359 ATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred cEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 888888888888888877665554 5888888888886 367888888888875
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-30 Score=255.23 Aligned_cols=330 Identities=18% Similarity=0.221 Sum_probs=208.9
Q ss_pred CCcEEEeeCcccCCCCC-------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-e-eecCHHHHHHH
Q 018109 5 TGNSQVLAATQTPGEAG-------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQN 69 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~-------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i-~~~dl~~ll~~ 69 (360)
.|+++++++.++..+.. +++++||+++|+.+.+++++ ...++|++++||. + ...+++++++.
T Consensus 46 ~~~~~iivv~~~~~~~i~~~~~~~~~~~v~~~~~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~ 122 (456)
T PRK14356 46 LFGDNVWTVVGHRADMVRAAFPDEDARFVLQEQQLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKE 122 (456)
T ss_pred cCCCcEEEEECCCHHHHHHhccccCceEEEcCCCCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHH
Confidence 45677777776643321 13357999999999999863 1247899999998 4 45568999988
Q ss_pred HHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH
Q 018109 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 149 (360)
Q Consensus 70 h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~ 149 (360)
|+ +++++++..++++ +..||.+.. ++|+|.++.|||+..... ....+.+.++|+|+|+++
T Consensus 123 ~~--~~~~~l~~~~~~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~---------------~~~~~~~~~~GiY~f~~~ 182 (456)
T PRK14356 123 AA--GADLAFMTLTLPD--PGAYGRVVR-RNGHVAAIVEAKDYDEAL---------------HGPETGEVNAGIYYLRLD 182 (456)
T ss_pred Hh--cCCEEEEEEEcCC--CCCceEEEE-cCCeEEEEEECCCCChHH---------------hhhhcCeEEEEEEEEEHH
Confidence 76 5678888888877 568998876 478999999998642100 000145789999999999
Q ss_pred HHHHHHHhhCCC---Ccchhhcccccccc-cCceEEEEeCC--ceeecCCHHHHHHHHHHhhcCC-------------CC
Q 018109 150 ILLNLLRWRFPT---ANDFGSEIIPASAN-EQFLKAYLFND--YWEDIGTIRSFFEANLALTAHP-------------PM 210 (360)
Q Consensus 150 vl~~ll~~~~~~---~~~~~~~~l~~~i~-~~~I~~~~~~g--~w~digtp~~~~~a~~~~l~~~-------------~~ 210 (360)
+|..+++..... ......++++.+++ +.++.+|+..+ +|++++||++|.+++..++.+. +.
T Consensus 183 ~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~ 262 (456)
T PRK14356 183 AVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPE 262 (456)
T ss_pred HHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCC
Confidence 987766543211 11122355666554 46799999865 5799999999999887665431 11
Q ss_pred CCccCCCCceecc------------CCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEE
Q 018109 211 FSFYDATKPIYTS------------RRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMML 276 (360)
Q Consensus 211 ~~~~~~~~~v~~~------------~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~ 276 (360)
...+++.+.+.++ +.|+++|.+ .++.|.+++|+++|.|+ ++.+.+++||++|.|++++.|.+.+++
T Consensus 263 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i 342 (456)
T PRK14356 263 SVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVL 342 (456)
T ss_pred cEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEE
Confidence 1222233333322 233334444 34555566777777777 566666667766666666666544444
Q ss_pred CCcccchh-HHHHhh-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccc-ccccCCceEEeCCeE-----EE
Q 018109 277 GADFYETD-AEVASL-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVT-----VI 348 (360)
Q Consensus 277 ~~~~~~~~-~~~~~~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-----~i 348 (360)
|++-.... +.+++. +.+| +.+++++.+.+|+||+++.||+++++.++.+..+ ...|+|+++++.+++ .|
T Consensus 343 g~~~~ig~~~~i~~~~i~~~---~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~i 419 (456)
T PRK14356 343 EEGARVGNFVEMKKAVLGKG---AKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTI 419 (456)
T ss_pred CCCCEecCCceeeeeEecCC---cEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEE
Confidence 43200000 111111 2222 4455555556677777778888877766654333 347888888887764 67
Q ss_pred cCCcEeCCCccC
Q 018109 349 LKNSVITDGFVI 360 (360)
Q Consensus 349 g~~~~i~~g~~i 360 (360)
|+++.|++|++|
T Consensus 420 g~~~~i~~~~~v 431 (456)
T PRK14356 420 GDGALVGAGSVI 431 (456)
T ss_pred CCCCEEcCCCEE
Confidence 888899988864
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=232.19 Aligned_cols=272 Identities=22% Similarity=0.281 Sum_probs=209.6
Q ss_pred CCCCcEEEeeCcccCCCCCCc-------------------cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCH
Q 018109 3 QLTGNSQVLAATQTPGEAGKR-------------------WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY 63 (360)
Q Consensus 3 ~~~g~~~i~~~~~~~~~~~~~-------------------~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl 63 (360)
+..|+.+|+++-.|..+..+. -++|||++|++-++.|-+ ...+.|+|+|+|+-+++++
T Consensus 47 qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrYL~E~~plGtaGgLyhFrdqIl~---g~ps~vFvlnaDVCcsfPl 123 (407)
T KOG1460|consen 47 QISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRYLREDNPLGTAGGLYHFRDQILA---GSPSAVFVLNADVCCSFPL 123 (407)
T ss_pred cccchhheeEEecccchHHHHHHHHHHhhcccchhhhccCCCCCcccceeehhhHHhc---CCCceEEEEecceecCCcH
Confidence 566788888888886542221 148999999999998865 3468999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEEC-CCCceEEEEecCCccccccccccccccccccccccccCceeeee
Q 018109 64 MDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMG 142 (360)
Q Consensus 64 ~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d-~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~G 142 (360)
++|++.|++.++.+||+..++..+..++||.+..| ..++|+.++|||.... ++.++||
T Consensus 124 ~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCG 182 (407)
T KOG1460|consen 124 QDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCG 182 (407)
T ss_pred HHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hccccee
Confidence 99999999999999999999988778899998877 6789999999998753 5789999
Q ss_pred EEEEeHHHHHHHHHhhC-----------------CCCcc---hhhcccccccccCceEEEEeCCceeecCCHHHHHHHHH
Q 018109 143 VYLFKKEILLNLLRWRF-----------------PTAND---FGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANL 202 (360)
Q Consensus 143 Iyifs~~vl~~ll~~~~-----------------~~~~~---~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~ 202 (360)
+|+|++++|+.+ ++.. +.+.+ +..|+|+.++..+.+|+|...++|..+-|+..-+.+++
T Consensus 183 vYlF~~eif~~i-~~v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~ 261 (407)
T KOG1460|consen 183 VYLFTPEIFNAI-AEVYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASR 261 (407)
T ss_pred EEEecHHHHHHH-HHHHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhh
Confidence 999999999754 2211 11112 23467777778899999999999999999999999999
Q ss_pred HhhcCCCCCC--ccCCCCceeccCCCCCCceecCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcc
Q 018109 203 ALTAHPPMFS--FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADF 280 (360)
Q Consensus 203 ~~l~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~ 280 (360)
.+|++...++ ...+ .-++.+.|-++++|+. ++.+.+.+.|++ ++.||.+++||++++|.+++++.+
T Consensus 262 lYLs~yk~t~p~~Lak--~pgt~a~IigdVyIhP----sakvhptAkiGP----NVSIga~vrvg~GvRl~~sIIl~d-- 329 (407)
T KOG1460|consen 262 LYLSQYKRTHPARLAK--GPGTQAEIIGDVYIHP----SAKVHPTAKIGP----NVSIGANVRVGPGVRLRESIILDD-- 329 (407)
T ss_pred hHHHHHhhcCchhhcC--CCCCCceEEeeeEEcC----cceeCCccccCC----CceecCCceecCCceeeeeeeccC--
Confidence 9987542221 0000 0011122333333322 333444444443 788999999999999999999997
Q ss_pred cchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCC
Q 018109 281 YETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEG 328 (360)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~ 328 (360)
+.|.+|+.+-+||||+.|.||.++.+.....
T Consensus 330 -----------------~ei~enavVl~sIigw~s~iGrWaRVe~~pv 360 (407)
T KOG1460|consen 330 -----------------AEIEENAVVLHSIIGWKSSIGRWARVEGIPV 360 (407)
T ss_pred -----------------cEeeccceEEeeeecccccccceeeeccccc
Confidence 9999999999999999999999999875433
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-29 Score=248.20 Aligned_cols=331 Identities=21% Similarity=0.270 Sum_probs=214.4
Q ss_pred CCCcEEEeeCcccCCCCC------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHH
Q 018109 4 LTGNSQVLAATQTPGEAG------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQN 69 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~ 69 (360)
..|+.+++++.++..+.. ..+.+||+++++++.+++++ .+++|++++||. +.+.+++++++.
T Consensus 42 ~~gi~~iivvv~~~~~~i~~~~~~~~~~~~~~~~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~ 117 (458)
T PRK14354 42 KAGIDKIVTVVGHGAEEVKEVLGDRSEFALQEEQLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDF 117 (458)
T ss_pred hCCCCeEEEEeCCCHHHHHHHhcCCcEEEEcCCCCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHH
Confidence 357888887766644322 22357999999999999863 126799999996 456778999999
Q ss_pred HHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH
Q 018109 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 149 (360)
Q Consensus 70 h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~ 149 (360)
|++.++++|+++.+.++ +..|+.+..|++++|+.+.|||..... . ....++++|+|+|+++
T Consensus 118 ~~~~~~~~t~~~~~~~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~---------------~--~~~~~~~~Giy~f~~~ 178 (458)
T PRK14354 118 HEEHKAAATILTAIAEN--PTGYGRIIRNENGEVEKIVEQKDATEE---------------E--KQIKEINTGTYCFDNK 178 (458)
T ss_pred HHhcCCceEEEEEEcCC--CCCceEEEEcCCCCEEEEEECCCCChH---------------H--hcCcEEEEEEEEEEHH
Confidence 99888888888877765 567998888878899999998753110 0 0135789999999998
Q ss_pred HHHHHHHhhCCC---Ccchhhcccccccc-cCceEEEEeCCc--eeecCCHHHHHHHHHHhhcCC------CC-------
Q 018109 150 ILLNLLRWRFPT---ANDFGSEIIPASAN-EQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PM------- 210 (360)
Q Consensus 150 vl~~ll~~~~~~---~~~~~~~~l~~~i~-~~~I~~~~~~g~--w~digtp~~~~~a~~~~l~~~------~~------- 210 (360)
.|...+++.... ......+.++.+++ +.++.+|+.+++ |+++.++++|.+++..+..+. +.
T Consensus 179 ~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~ 258 (458)
T PRK14354 179 ALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPE 258 (458)
T ss_pred HHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCC
Confidence 665555543221 11112455666665 467999999876 457779999988875442111 11
Q ss_pred CCccCCCCceecc------------CCCCCCcee-cCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEEC
Q 018109 211 FSFYDATKPIYTS------------RRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLG 277 (360)
Q Consensus 211 ~~~~~~~~~v~~~------------~~~~~~~~~-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~ 277 (360)
..++.+.+.+++. ++|+.+|.+ .++.|.++.|+++|.|.++.+.+++||++|.|++++.|...+++|
T Consensus 259 ~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig 338 (458)
T PRK14354 259 STYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIG 338 (458)
T ss_pred eEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEe
Confidence 1122223333333 333444444 345555677777777776566677788888888777777555555
Q ss_pred Ccccchh-HHHHhh-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccc-ccccCCceEEeCCeE-----EEc
Q 018109 278 ADFYETD-AEVASL-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVT-----VIL 349 (360)
Q Consensus 278 ~~~~~~~-~~~~~~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-----~ig 349 (360)
++-.... +.+++. +.++ +.+++.+.+.+++||++|.||+++.+.+.+...+ +..++|+++++.+++ .||
T Consensus 339 ~~~~i~~~~~i~~~~i~~~---~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig 415 (458)
T PRK14354 339 EEVKIGNFVEIKKSTIGEG---TKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVG 415 (458)
T ss_pred CCcEECCceEEeeeEECCC---CEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEEC
Confidence 4311111 112111 1121 4445555556778888888888888877655444 357788888777663 678
Q ss_pred CCcEeCCCccC
Q 018109 350 KNSVITDGFVI 360 (360)
Q Consensus 350 ~~~~i~~g~~i 360 (360)
+++.||+|++|
T Consensus 416 ~~~~v~~~~~v 426 (458)
T PRK14354 416 DNAYIAAGSTI 426 (458)
T ss_pred CCCEECCCCEE
Confidence 89999998875
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=245.24 Aligned_cols=325 Identities=22% Similarity=0.250 Sum_probs=197.0
Q ss_pred CCCcEEEeeCcccCCCCC---------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eee-cCHHHH
Q 018109 4 LTGNSQVLAATQTPGEAG---------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDF 66 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~---------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~-~dl~~l 66 (360)
..|+.+++++.++..+.. .+..+||+++++.+..+++. ..++|++++||. +++ .+++++
T Consensus 45 ~~gi~~ivvv~~~~~~~i~~~~~~~~~~~~~~~~~~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l 120 (446)
T PRK14353 45 SLGPSRVAVVVGPGAEAVAAAAAKIAPDAEIFVQKERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARL 120 (446)
T ss_pred hCCCCcEEEEECCCHHHHHHHhhccCCCceEEEcCCCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHH
Confidence 346677776666543211 12347999999999998852 137899999998 544 457888
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEE
Q 018109 67 VQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 146 (360)
Q Consensus 67 l~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyif 146 (360)
++ |.+.+++++++..+..+ +..||.+.. ++++|..+.|||...... ....+.++|+|+|
T Consensus 121 ~~-~~~~~~~~~i~~~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~ 179 (446)
T PRK14353 121 RE-RLADGADVVVLGFRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAA 179 (446)
T ss_pred HH-hHhcCCcEEEEEEEeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEE
Confidence 87 44566778888777655 568998777 578999999998643210 0135789999999
Q ss_pred eHHHHHHHHHhhCCC---Ccchhhcccccccc-cCceEEEEeC-CceeecCCHHHHHHHHHHhhcC---------C----
Q 018109 147 KKEILLNLLRWRFPT---ANDFGSEIIPASAN-EQFLKAYLFN-DYWEDIGTIRSFFEANLALTAH---------P---- 208 (360)
Q Consensus 147 s~~vl~~ll~~~~~~---~~~~~~~~l~~~i~-~~~I~~~~~~-g~w~digtp~~~~~a~~~~l~~---------~---- 208 (360)
+++.|..++++.... ...+..+.++.+++ +.++.+++.+ ++|+|+++|++|.+++..+..+ .
T Consensus 180 ~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~ 259 (446)
T PRK14353 180 DGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIA 259 (446)
T ss_pred EHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeC
Confidence 998776666653221 11123456666665 4679999986 5799999999999888644322 1
Q ss_pred CCCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchh-HH
Q 018109 209 PMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETD-AE 286 (360)
Q Consensus 209 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~-~~ 286 (360)
+...++++.+.|++++.+++++.+.+ ++.|+++|.|+ ++.|.+++||++|.|++++.|...+++|++-...+ ..
T Consensus 260 ~~~~~~~~~~~I~~~~~i~~~~~I~~----~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~ 335 (446)
T PRK14353 260 PETVFFSYDTVIGRDVVIEPNVVFGP----GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVE 335 (446)
T ss_pred CCeEEECCceEECCCCEECCCCEECC----CCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceE
Confidence 11123334444444444444444422 34444444444 34444445555555555544443333333211100 00
Q ss_pred HHhh-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccc-ccccCCceEEeCCeE-----EEcCCcEeCCCcc
Q 018109 287 VASL-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVT-----VILKNSVITDGFV 359 (360)
Q Consensus 287 ~~~~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~ 359 (360)
+++. +..+ +.+++++.+.+++||++|.||+++++.+...... ...|+++++|+.+++ .||+++.||+|++
T Consensus 336 i~~~~i~~~---~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~ 412 (446)
T PRK14353 336 VKNAKLGEG---AKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSV 412 (446)
T ss_pred EeceEECCC---CEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCE
Confidence 0000 0001 5666666667788888888888888766544333 346677777766653 5688888888876
Q ss_pred C
Q 018109 360 I 360 (360)
Q Consensus 360 i 360 (360)
|
T Consensus 413 v 413 (446)
T PRK14353 413 I 413 (446)
T ss_pred E
Confidence 4
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-28 Score=241.08 Aligned_cols=329 Identities=18% Similarity=0.218 Sum_probs=219.6
Q ss_pred CCcEEEeeCcccCCCCC--------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHH
Q 018109 5 TGNSQVLAATQTPGEAG--------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQ 68 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~--------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~ 68 (360)
.|+.+++++.++..+.. +++++||+++++.+..++++. +++|+|++||. +...+++++++
T Consensus 42 ~g~~~iivvv~~~~~~i~~~~~~~~~i~~v~~~~~~G~~~sv~~~~~~l~~~----~~~vlV~~~D~P~i~~~~l~~ll~ 117 (450)
T PRK14360 42 LKPDRRLVIVGHQAEEVEQSLAHLPGLEFVEQQPQLGTGHAVQQLLPVLKGF----EGDLLVLNGDVPLLRPETLEALLN 117 (450)
T ss_pred CCCCeEEEEECCCHHHHHHHhcccCCeEEEEeCCcCCcHHHHHHHHHHhhcc----CCcEEEEeCCccccCHHHHHHHHH
Confidence 46667776666644311 122479999999999988631 36799999998 56778999999
Q ss_pred HHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeH
Q 018109 69 NHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKK 148 (360)
Q Consensus 69 ~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~ 148 (360)
.|++.+++++++..+.++ +..||.+..|++++|.++.|||.....+ ..+.++++|+|+|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~--~~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~ 178 (450)
T PRK14360 118 THRSSNADVTLLTARLPN--PKGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNW 178 (450)
T ss_pred HHHhcCCcEEEEEEecCC--CCCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEH
Confidence 999999888887777766 5679998888889999999998642110 024689999999999
Q ss_pred HHHHHHHHhhCCCCcchhhccccccccc-CceEEEEeCCce--eecCCHHHHHHHHHHhhcCC------CCCCcc-----
Q 018109 149 EILLNLLRWRFPTANDFGSEIIPASANE-QFLKAYLFNDYW--EDIGTIRSFFEANLALTAHP------PMFSFY----- 214 (360)
Q Consensus 149 ~vl~~ll~~~~~~~~~~~~~~l~~~i~~-~~I~~~~~~g~w--~digtp~~~~~a~~~~l~~~------~~~~~~----- 214 (360)
+.|.+++++..+... ..+..+++++.. .++.+|.++++| ..+++|+++..+...+.... +...++
T Consensus 179 ~~l~~~~~~~~~~~~-~~e~~~td~i~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~ 257 (450)
T PRK14360 179 PALAEVLPKLSSNND-QKEYYLTDTVSLLDPVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASC 257 (450)
T ss_pred HHHHHHHhhcccccc-CCceeHHHHHHHHhhceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeE
Confidence 988877765432211 122333333321 235667777655 55999999988776543211 001111
Q ss_pred --------------CCCCceeccCCCCCCcee-cCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCc
Q 018109 215 --------------DATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 279 (360)
Q Consensus 215 --------------~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~ 279 (360)
++.+.+...+.+++++.+ .++.|.++.|+++|.|..+.+.+++||+++.|+++++|.+.+++|++
T Consensus 258 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~ 337 (450)
T PRK14360 258 TISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSN 337 (450)
T ss_pred EEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCc
Confidence 222233344455556666 45666677788888887666677888888888888888765556654
Q ss_pred ccchh-HHHHhh-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccc-ccccCCceEEeCCeE-----EEcCC
Q 018109 280 FYETD-AEVASL-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVT-----VILKN 351 (360)
Q Consensus 280 ~~~~~-~~~~~~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-----~ig~~ 351 (360)
-++.+ +.++.. ++++ +.|++++.+.+++||++|+||+++++.++++... .++|+++++||.+++ +||++
T Consensus 338 ~~Ig~~~~i~~~~i~~~---~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~ 414 (450)
T PRK14360 338 CRIGNFVEIKKSQLGEG---SKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGED 414 (450)
T ss_pred eEECCCEEEeccccCCC---cEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCC
Confidence 22222 222222 2232 5556666667788999999999999988766655 347788888877763 66788
Q ss_pred cEeCCCccC
Q 018109 352 SVITDGFVI 360 (360)
Q Consensus 352 ~~i~~g~~i 360 (360)
+.|++|++|
T Consensus 415 ~~v~~~~~v 423 (450)
T PRK14360 415 VTVAAGSTI 423 (450)
T ss_pred CEECCCCEE
Confidence 888888764
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-27 Score=217.26 Aligned_cols=259 Identities=20% Similarity=0.299 Sum_probs=191.6
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCC------C---CCcccEEE
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDS------R---ASDFGLMK 96 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~------~---~~~~g~v~ 96 (360)
.|||++|+...++++ ++||||++||+++++++..+++.||+.++.++|++...... + .....++.
T Consensus 97 ~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~d~ig 170 (433)
T KOG1462|consen 97 FGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQARDVIG 170 (433)
T ss_pred cCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCcccccccccceee
Confidence 399999999999998 38999999999999999999999999888777766533211 1 11233344
Q ss_pred ECCC-CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccc
Q 018109 97 INNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASAN 175 (360)
Q Consensus 97 ~d~~-g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~ 175 (360)
++++ +|+......-+ ....+.+..+++|.+|.... .++|.++++|+|+.++++.+ .+. +...+|..+++|++++
T Consensus 171 i~e~t~rl~y~~~~~d--~~~~l~i~~slL~~~prltl-~t~L~dahiY~~k~~v~d~l-~~~-~sisSfk~~f~P~lvk 245 (433)
T KOG1462|consen 171 INEDTERLAYSSDSAD--EEEPLVIRKSLLWNHPRLTL-TTKLVDAHIYVFKHWVIDLL-SEK-ESISSFKADFLPYLVK 245 (433)
T ss_pred eccccceeEEeecCCc--CCCceehhhhhhhcCCceEE-eccccceeeeeeHHHHHHHH-hcC-Ccceeecccccchhhh
Confidence 4444 35443322222 23467788888999988864 57999999999999999865 432 3345666677766543
Q ss_pred ---------------------------------cCceEEEEe--CCceeecCCHHHHHHHHH--HhhcCCCCCCccCCCC
Q 018109 176 ---------------------------------EQFLKAYLF--NDYWEDIGTIRSFFEANL--ALTAHPPMFSFYDATK 218 (360)
Q Consensus 176 ---------------------------------~~~I~~~~~--~g~w~digtp~~~~~a~~--~~l~~~~~~~~~~~~~ 218 (360)
+.++++|++ +.-+.+++|...|+++|+ .+..-.+...++....
T Consensus 246 kQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~~e~~~~k~~~ 325 (433)
T KOG1462|consen 246 KQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLCSEAKFVKNYV 325 (433)
T ss_pred hhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhccccccccchh
Confidence 145677776 357889999999999994 3433332221111111
Q ss_pred ceeccCCCCCCceecCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcc
Q 018109 219 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVP 297 (360)
Q Consensus 219 ~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
... ..+. .+++++++|+|+ ++.|++|+||.+|.||+.++|.+|++|.+
T Consensus 326 ~~~--------~l~g----~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~n------------------- 374 (433)
T KOG1462|consen 326 KKV--------ALVG----ADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDN------------------- 374 (433)
T ss_pred hhe--------eccc----hhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecC-------------------
Confidence 000 1111 278999999999 89999999999999999999999999997
Q ss_pred eEECCCCeEeeeEecCCCEECCCcEEecC
Q 018109 298 VGIGENTKIKECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 298 ~~ig~~~~i~~~~i~~~~~ig~~~~~~~~ 326 (360)
+.||+++.|.+||||+++.||+++.+.|+
T Consensus 375 V~vg~G~~IensIIg~gA~Ig~gs~L~nC 403 (433)
T KOG1462|consen 375 VVVGDGVNIENSIIGMGAQIGSGSKLKNC 403 (433)
T ss_pred cEecCCcceecceecccceecCCCeeeee
Confidence 99999999999999999999999999985
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=225.56 Aligned_cols=310 Identities=18% Similarity=0.275 Sum_probs=214.2
Q ss_pred CCCcEEEeeCcccCCCCCCc------cc---------------cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC
Q 018109 4 LTGNSQVLAATQTPGEAGKR------WF---------------QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD 62 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~~~------~~---------------lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d 62 (360)
.+|+.++.+..-.+..++.+ |+ +-.|+|+|...++-- ..++|++++||+++|+|
T Consensus 67 ~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~v~ti~s~~~~S~GDamR~id~k~l-----itgDFiLVsgd~vsN~p 141 (673)
T KOG1461|consen 67 RAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFIVVTICSGESRSVGDAMRDIDEKQL-----ITGDFILVSGDTVSNMP 141 (673)
T ss_pred hcCceEEEEEecccHHHHHHHHhhccccccccceEEEEcCCCcCcHHHHHHHHHhcce-----eecceEEEeCCeeecCc
Confidence 46787766665544444433 32 467999998875432 25899999999999999
Q ss_pred HHHHHHHHHHc-----CCcEEEEEeecCCCCCCcccEEEEC-CCCceEEEEecCCccccccccccccccccccccccccC
Q 018109 63 YMDFVQNHRQS-----GADITISCLPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP 136 (360)
Q Consensus 63 l~~ll~~h~~~-----~a~~tll~~~~~~~~~~~~g~v~~d-~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~ 136 (360)
|++++++|+++ ++.|||++++...-....--.+.+| .+.|++.+.+-... .....+++.++-.+ ..+....
T Consensus 142 l~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~~--~~~~~l~~sl~d~~-~~v~vr~ 218 (673)
T KOG1461|consen 142 LRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVRE--KHDIQLDLSLFDSN-DEVEVRN 218 (673)
T ss_pred hHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEEEcCCcceEEeehhhccc--ccccccCHHHhcCC-CcEEEEc
Confidence 99999999753 4779999987742111223345566 45688888751111 11344555555544 3344568
Q ss_pred ceeeeeEEEEeHHHHHHHHHhhC-CCCcchhhcccccccccCceEEEEeCC--ceeecCCHHHHHHHHHHhhcCCC----
Q 018109 137 YIASMGVYLFKKEILLNLLRWRF-PTANDFGSEIIPASANEQFLKAYLFND--YWEDIGTIRSFFEANLALTAHPP---- 209 (360)
Q Consensus 137 ~~~~~GIyifs~~vl~~ll~~~~-~~~~~~~~~~l~~~i~~~~I~~~~~~g--~w~digtp~~~~~a~~~~l~~~~---- 209 (360)
++.+++|-+|||.++..+.++.. +...+|.+.+|.+-+-+.+|+++.+.. |..++.+++.|...+++++++|.
T Consensus 219 DL~dc~IdIcS~~V~sLF~dNFDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~V 298 (673)
T KOG1461|consen 219 DLLDCQIDICSPEVLSLFTDNFDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLV 298 (673)
T ss_pred cCCCceeeEecHhHHHHhhhcccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhccccc
Confidence 99999999999999976544321 223355556666666689999999864 89999999999999999999982
Q ss_pred -CCCccCC-CCceecc-CCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccch
Q 018109 210 -MFSFYDA-TKPIYTS-RRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYET 283 (360)
Q Consensus 210 -~~~~~~~-~~~v~~~-~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~ 283 (360)
...+.+. ....... .+-++.+.+ .++.+. ++.||.++.|+ ++.|.+|+||.+|.||.|++|.++.++.+
T Consensus 299 pd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~----- 373 (673)
T KOG1461|consen 299 PDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN----- 373 (673)
T ss_pred ccccCCCCceeeecccccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-----
Confidence 1111111 1111111 112333333 234443 78899999999 88889999999999999999999988775
Q ss_pred hHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceE
Q 018109 284 DAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFY 340 (360)
Q Consensus 284 ~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 340 (360)
|+||+||.|.+|+|++++.|+.++++..++.++..++++++..
T Consensus 374 --------------v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~ 416 (673)
T KOG1461|consen 374 --------------VTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFV 416 (673)
T ss_pred --------------cEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCcc
Confidence 9999999999999999999999999887655554444444433
|
|
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=193.36 Aligned_cols=175 Identities=23% Similarity=0.303 Sum_probs=139.9
Q ss_pred CCcEEEeeCcccCCCCC-------------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHH
Q 018109 5 TGNSQVLAATQTPGEAG-------------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~-------------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ 65 (360)
+|+++++++.++.++.. +...+|||+|+++++++++. ..+++|+|++||++++.|+++
T Consensus 45 ~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~ 121 (257)
T cd06428 45 PDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQE 121 (257)
T ss_pred CCCcEEEEEecCCHHHHHHHHHhcccccCceEEEecCCccCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHH
Confidence 57888888877644311 11257999999999999853 113789999999999999999
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCcccEEEEC-CCCceEEEEecCCccccccccccccccccccccccccCceeeeeEE
Q 018109 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 144 (360)
Q Consensus 66 ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d-~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIy 144 (360)
++++|+++++++|+++.+++.+.+..||++.+| ++++|+++.|||..+. +.++++|+|
T Consensus 122 ~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giy 180 (257)
T cd06428 122 LLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVY 180 (257)
T ss_pred HHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEE
Confidence 999999999999999988754446789999888 6789999999987532 468999999
Q ss_pred EEeHHHHHHHHHhhCC------------------CCcchhhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHh
Q 018109 145 LFKKEILLNLLRWRFP------------------TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 145 ifs~~vl~~ll~~~~~------------------~~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~ 204 (360)
+|++++|+.+ .+..+ ...++..++++.+++++++.+|+++|||.|||||++|+++++.+
T Consensus 181 i~~~~~~~~i-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 181 LFSPEIFDTI-KKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred EECHHHHHHH-hhhccccccccccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 9999999765 33211 11234457888888888999999999999999999999999753
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=183.02 Aligned_cols=172 Identities=24% Similarity=0.443 Sum_probs=141.5
Q ss_pred CCCcEEEeeCcccC-CC-------CC-----------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHH
Q 018109 4 LTGNSQVLAATQTP-GE-------AG-----------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYM 64 (360)
Q Consensus 4 ~~g~~~i~~~~~~~-~~-------~~-----------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~ 64 (360)
.+|+++|+++.++. .. .+ |+.++|-|+|+..+++++.+ ++|+|+.||.++.-++.
T Consensus 43 ~aGI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~~p~GlA~Av~~a~~fv~~------~~f~l~LGDNi~~~~l~ 116 (286)
T COG1209 43 LAGIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAEDFVGD------DDFVLYLGDNIFQDGLS 116 (286)
T ss_pred HcCCceEEEEecCCchhhhhhhhcCccccCcceEEEecCCCCcHHHHHHHHHhhcCC------CceEEEecCceeccChH
Confidence 57999999998882 22 12 23358999999999999984 89999999997766999
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEE
Q 018109 65 DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 144 (360)
Q Consensus 65 ~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIy 144 (360)
++++.+.++.+++++++.++++ |++||++.+|+++++++++|||..+. ++|+-+|+|
T Consensus 117 ~~~~~~~~~~~ga~i~~~~V~d--P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY 173 (286)
T COG1209 117 ELLEHFAEEGSGATILLYEVDD--PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLY 173 (286)
T ss_pred HHHHHHhccCCCcEEEEEEcCC--cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEE
Confidence 9999999999999999999998 88999999998899999999999875 689999999
Q ss_pred EEeHHHHHHHHHhhCCCCcchhh----ccccccccc-CceEEEEeCCceeecCCHHHHHHHHHHhhcC
Q 018109 145 LFKKEILLNLLRWRFPTANDFGS----EIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAH 207 (360)
Q Consensus 145 ifs~~vl~~ll~~~~~~~~~~~~----~~l~~~i~~-~~I~~~~~~g~w~digtp~~~~~a~~~~l~~ 207 (360)
+|++++|+. .+...|.. -.+ +.+..++++ ..+......|+|.|.||+++|++|+..++..
T Consensus 174 ~~d~~Vf~~-~~~ikPS~--RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~~ 238 (286)
T COG1209 174 FYDPSVFEA-IKQIKPSA--RGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRTV 238 (286)
T ss_pred EeChHHHHH-HHcCCCCC--CCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHHH
Confidence 999999975 46654431 223 344455554 5566667788999999999999999988763
|
|
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=183.40 Aligned_cols=170 Identities=25% Similarity=0.386 Sum_probs=139.8
Q ss_pred CCcEEEeeCcccCCCCC-------------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHH
Q 018109 5 TGNSQVLAATQTPGEAG-------------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~-------------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ 65 (360)
.|+.+++++.++..+.. ....+||+++|+.+..++++ .+++|+|++||++++.|+.+
T Consensus 44 ~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~ 119 (233)
T cd06425 44 AGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAE 119 (233)
T ss_pred CCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHH
Confidence 47778887777654321 12347999999999999863 13689999999999999999
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCcccEEEECC-CCceEEEEecCCccccccccccccccccccccccccCceeeeeEE
Q 018109 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 144 (360)
Q Consensus 66 ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~-~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIy 144 (360)
++++|+++++++++++.+.++ +++||++.+|+ +++|.++.|||..+. +.++++|+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy 176 (233)
T cd06425 120 LLDFHKKHGAEGTILVTKVED--PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIY 176 (233)
T ss_pred HHHHHHHcCCCEEEEEEEcCC--ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEE
Confidence 999999999999999988765 56899999987 689999999987542 468999999
Q ss_pred EEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhh
Q 018109 145 LFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 145 ifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l 205 (360)
+|++++|+.+ ... ..+...++++.++++.++.+|+++|+|.|+|||++|++|++.+|
T Consensus 177 i~~~~~l~~l-~~~---~~~~~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 177 ILNPSVLDRI-PLR---PTSIEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred EECHHHHHhc-ccC---cccchhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 9999999765 331 22344578999988899999999999999999999999998775
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=178.97 Aligned_cols=148 Identities=17% Similarity=0.197 Sum_probs=135.4
Q ss_pred CCCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec------------eE
Q 018109 209 PMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD------------TM 274 (360)
Q Consensus 209 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~------------~~ 274 (360)
.+++++++.+.+++++.|+|.|.+.+ ++.|+++++|. +++|+ .++||++++|.+++.|+. .+
T Consensus 7 HPTAiIe~gA~ig~~V~IGpf~iIg~----~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l 82 (260)
T COG1043 7 HPTAIIEPGAEIGEDVKIGPFCIIGP----NVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRL 82 (260)
T ss_pred CcceeeCCCCCcCCCCEECceEEECC----CcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEE
Confidence 35778888999999999999998866 88999999999 88886 899999999999999994 89
Q ss_pred EECCcccchh-HHHHhhhhCCCcceEECCCCeE-eeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCe-----EE
Q 018109 275 MLGADFYETD-AEVASLLAEGRVPVGIGENTKI-KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV-----TV 347 (360)
Q Consensus 275 ~~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i-~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~ 347 (360)
++|+++++|| +|||+++.+|++-|.||+++++ .+++|.|||+||.+|+++|.+.+.+|+.|+|++.||..+ +.
T Consensus 83 ~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvr 162 (260)
T COG1043 83 IIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVR 162 (260)
T ss_pred EECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEE
Confidence 9999999999 9999999999989999999998 599999999999999999999999999999999998665 58
Q ss_pred EcCCcEeCCCccC
Q 018109 348 ILKNSVITDGFVI 360 (360)
Q Consensus 348 ig~~~~i~~g~~i 360 (360)
||++++||..|-|
T Consensus 163 IG~~amiGg~S~v 175 (260)
T COG1043 163 IGAHAMIGGLSAV 175 (260)
T ss_pred Ecchheecccccc
Confidence 8999999988743
|
|
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-22 Score=181.57 Aligned_cols=157 Identities=34% Similarity=0.616 Sum_probs=125.7
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCc--EEEEEeecCCCCCCcccEEEECCCCce
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGAD--ITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~--~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
+|||+||+++.+++... ..+++|+|++||++++.|+.++++.|++++++ +++...+.++ +++||++..|++++|
T Consensus 84 ~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~~~V 159 (248)
T PF00483_consen 84 LGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVED--PSRYGVVEVDEDGRV 159 (248)
T ss_dssp SCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSG--GGGSEEEEEETTSEE
T ss_pred cchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhccccccccccccccccc--cccceeeeeccceeE
Confidence 69999999999999851 00234999999999999999999999999984 4555555544 789999999988999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHH--hhCCCCcchhhcccccccccC-ceE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR--WRFPTANDFGSEIIPASANEQ-FLK 180 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~--~~~~~~~~~~~~~l~~~i~~~-~I~ 180 (360)
.+|.|||..+. .+.++++|+|+|++++|..+++ ........+..++++.+++++ .+.
T Consensus 160 ~~~~EKP~~~~--------------------~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~ 219 (248)
T PF00483_consen 160 IRIVEKPDNPN--------------------ASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVY 219 (248)
T ss_dssp EEEEESCSSHS--------------------HSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEE
T ss_pred EEEeccCcccc--------------------cceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceE
Confidence 99999998643 1468999999999999987754 111223445567888888865 566
Q ss_pred EEEeCC--ceeecCCHHHHHHHHHHhhc
Q 018109 181 AYLFND--YWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 181 ~~~~~g--~w~digtp~~~~~a~~~~l~ 206 (360)
+|..++ +|+|+|||++|++|++.+++
T Consensus 220 ~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 220 AFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp EEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred EEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 889888 79999999999999999875
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=179.58 Aligned_cols=147 Identities=20% Similarity=0.319 Sum_probs=124.8
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
++|||+||++++++++ +++|+|++||+++++|+.+++++|+++++++|++.. ++ +..||++.+| +++|+
T Consensus 102 ~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~--~~--~~~yG~v~~d-~~~V~ 170 (254)
T TIGR02623 102 STQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV--QP--PGRFGALDLE-GEQVT 170 (254)
T ss_pred cCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEe--cC--CCcccEEEEC-CCeEE
Confidence 3799999999999996 379999999999999999999999999999988765 23 5679999987 46999
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEe
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF 184 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~ 184 (360)
+|.|||... +.++++|+|+|++++|+ .++.. ..++..++++.+++++++.+|.+
T Consensus 171 ~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~-~l~~~---~~~~~~d~i~~l~~~~~v~~~~~ 224 (254)
T TIGR02623 171 SFQEKPLGD----------------------GGWINGGFFVLNPSVLD-LIDGD---ATVWEQEPLETLAQRGELSAYEH 224 (254)
T ss_pred EEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-hcccc---CchhhhhHHHHHHhCCCEEEEeC
Confidence 999998532 35789999999999995 44442 23555688999998889999999
Q ss_pred CCceeecCCHHHHHHHHHHhhcCC
Q 018109 185 NDYWEDIGTIRSFFEANLALTAHP 208 (360)
Q Consensus 185 ~g~w~digtp~~~~~a~~~~l~~~ 208 (360)
+|+|.|+|||++|.+++..+....
T Consensus 225 ~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 225 SGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred CCEEecCCchHHHHHHHHHHHcCC
Confidence 999999999999999999887765
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=182.69 Aligned_cols=156 Identities=16% Similarity=0.250 Sum_probs=120.8
Q ss_pred CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeee--------cCHHHHHHHHHHcCCcEEEEEeecCCCCCCccc
Q 018109 22 KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--------MDYMDFVQNHRQSGADITISCLPMDDSRASDFG 93 (360)
Q Consensus 22 ~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~--------~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g 93 (360)
+++++|||+||++|.+++++ ++|+|++||++++ +++++++++|+++++.++++....++ +++||
T Consensus 104 q~~~lGtg~Av~~a~~~l~~------~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~--~~~yG 175 (297)
T TIGR01105 104 QAQPLGLGHSILCARPVVGD------NPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGD--LSEYS 175 (297)
T ss_pred CCCcCchHHHHHHHHHHhCC------CCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcEEEEEEcCCC--Cccce
Confidence 34568999999999999963 7899999999987 68999999998888766444333233 78999
Q ss_pred EEEEC----CCCc---eEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC---Cc
Q 018109 94 LMKIN----NEGR---VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---AN 163 (360)
Q Consensus 94 ~v~~d----~~g~---V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~---~~ 163 (360)
++..+ ++++ |.++.|||..+.. ..+.++++|+|+|++++|+.+ +...+. ..
T Consensus 176 vv~~~~~~d~~g~v~~I~~~~EKP~~~~~------------------~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~ge~ 236 (297)
T TIGR01105 176 VIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLMAVGRYVLSADIWAEL-ERTEPGAWGRI 236 (297)
T ss_pred EEEecccccCCCCeeeEeEEEECCCCccc------------------CCcCEEEEEEEEECHHHHHHH-hcCCCCCCCee
Confidence 99983 3564 5899999965421 025799999999999999754 543221 11
Q ss_pred chhhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhh
Q 018109 164 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 164 ~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l 205 (360)
. ..+.++.+++++++++|.++|+|+|+|+|++|++++..+.
T Consensus 237 ~-ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 237 Q-LTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred e-HHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 1 2367777888889999999999999999999999988864
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=178.51 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=121.7
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeee--------cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--------MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMK 96 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~--------~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~ 96 (360)
++|||+|++++.+++.+ ++|+|++||++++ +|+++++++|.+++++++++....+ .+.+||++.
T Consensus 107 ~lGtg~al~~a~~~l~~------~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~--~~~~yGvv~ 178 (297)
T PRK10122 107 PLGLGHSILCARPAIGD------NPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPG--DLSEYSVIQ 178 (297)
T ss_pred cCchHHHHHHHHHHcCC------CCEEEEECCeeccCccccccchhHHHHHHHHHHhCCcEEEEEECCC--CCCCceEEE
Confidence 58999999999999953 7899999999986 5899999999988887554443333 378999999
Q ss_pred EC----CCC---ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCC--cchhh
Q 018109 97 IN----NEG---RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA--NDFGS 167 (360)
Q Consensus 97 ~d----~~g---~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~--~~~~~ 167 (360)
.| +++ +|.+|.|||..+.. ..+.++++|+|+|++++|..+. +..+.. .....
T Consensus 179 ~d~~~~~~g~v~~I~~~~EKp~~~~~------------------~~s~~~~~GiYi~~~~i~~~l~-~~~~~~~~e~~lt 239 (297)
T PRK10122 179 TKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLMAVGRYVLSADIWPELE-RTEPGAWGRIQLT 239 (297)
T ss_pred ecCcccCCCCeeeEEEEEECCCCccc------------------CCccEEEEEEEEECHHHHHHHH-hCCCCCCCeeeHH
Confidence 85 355 68999999964320 0246899999999999998763 322211 11224
Q ss_pred cccccccccCceEEEEeCCceeecCCHHHHHHHHHHh-hcC
Q 018109 168 EIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL-TAH 207 (360)
Q Consensus 168 ~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~-l~~ 207 (360)
++++.++++.++.+|.++|+|+|+|+|++|++++..+ |..
T Consensus 240 d~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~~~~ 280 (297)
T PRK10122 240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRN 280 (297)
T ss_pred HHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHHhcC
Confidence 6777888889999999999999999999999999998 443
|
|
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-20 Score=176.06 Aligned_cols=153 Identities=18% Similarity=0.254 Sum_probs=122.5
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeee--------cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEE
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--------MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLM 95 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~--------~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v 95 (360)
..+|||+|++++.+++. +++|+|++||++++ .|+.+++++|.+++++ |+++.+++. +..||++
T Consensus 111 ~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv 181 (302)
T PRK13389 111 LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPVAD--VTAYGVV 181 (302)
T ss_pred CCCChHHHHHHHHHHcC------CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC-EEEEEEccc--CCcceEE
Confidence 35899999999999985 37899999999875 7999999999988876 677777755 6789999
Q ss_pred EECC-------CCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC--Ccchh
Q 018109 96 KINN-------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFG 166 (360)
Q Consensus 96 ~~d~-------~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~--~~~~~ 166 (360)
..+. +++|..+.|||..... .+.++++|+|+|++++|+. ++...+. ...+.
T Consensus 182 ~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~s~~~~~GiYi~~~~il~~-l~~~~~~~~~e~~l 241 (302)
T PRK13389 182 DCKGVELAPGESVPMVGVVEKPKADVA-------------------PSNLAIVGRYVLSADIWPL-LAKTPPGAGDEIQL 241 (302)
T ss_pred EecCcccccCCcceEEEEEECCCCCCC-------------------CccEEEEEEEEECHHHHHH-HHhCCCCCCCeeeH
Confidence 8763 3479999999974321 1468999999999999964 5543221 11223
Q ss_pred hcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhh
Q 018109 167 SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 167 ~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l 205 (360)
.++++.++++.++.+|.++|+|+|+|||++|++++..+-
T Consensus 242 ~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 242 TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred HHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 567788888889999999999999999999999998874
|
|
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.8e-20 Score=168.45 Aligned_cols=148 Identities=20% Similarity=0.354 Sum_probs=123.9
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEE
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 105 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~ 105 (360)
+||++|++++.+++.+ +++|+|++||++++.|+.++++.|.++++++|+++.. . +..||++.+|++++|..
T Consensus 102 ~~t~~al~~a~~~~~~-----~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~--~--~~~~g~v~~d~~g~V~~ 172 (253)
T cd02524 102 TMTGGRLKRVRRYLGD-----DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH--P--PGRFGELDLDDDGQVTS 172 (253)
T ss_pred cccHHHHHHHHHhcCC-----CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec--C--CCcccEEEECCCCCEEE
Confidence 4699999999999852 2789999999999999999999999999999887653 2 46799999988899999
Q ss_pred EEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEeC
Q 018109 106 FSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185 (360)
Q Consensus 106 ~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~~ 185 (360)
+.|||..+ +.++++|+|+|++++|+.+ ++. ..++..+.++.+++++++.+|+++
T Consensus 173 ~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~l-~~~---~~~~~~d~l~~li~~~~v~~~~~~ 226 (253)
T cd02524 173 FTEKPQGD----------------------GGWINGGFFVLEPEVFDYI-DGD---DTVFEREPLERLAKDGELMAYKHT 226 (253)
T ss_pred EEECCCCC----------------------CceEEEEEEEECHHHHHhh-ccc---cchhhHHHHHHHHhcCCEEEEecC
Confidence 99998642 2478999999999998765 332 224456788999988899999999
Q ss_pred CceeecCCHHHHHHHHHHhhcCC
Q 018109 186 DYWEDIGTIRSFFEANLALTAHP 208 (360)
Q Consensus 186 g~w~digtp~~~~~a~~~~l~~~ 208 (360)
|+|.+|+||++|.+++..+....
T Consensus 227 g~w~~I~t~~~~~~~~~~~~~~~ 249 (253)
T cd02524 227 GFWQCMDTLRDKQTLEELWNSGK 249 (253)
T ss_pred CEEEeCcCHHHHHHHHHHHHcCC
Confidence 99999999999999998776543
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=165.98 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=120.9
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeec---CHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECC-
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN- 99 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~---dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~- 99 (360)
+++|||+||+++.+++++ ++|+|++||.++.. +++++++.|++++++ ++++..++.+.+.+||++.+|+
T Consensus 102 ~~~Gt~~al~~~~~~i~~------~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~v~~d~~ 174 (267)
T cd02541 102 EPLGLGHAVLCAKPFIGD------EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VIAVEEVPPEDVSKYGIVKGEKI 174 (267)
T ss_pred CCCChHHHHHHHHHHhCC------CceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EEEEEEcChhcCccceEEEeecC
Confidence 458999999999999963 78999999998765 499999999987775 4555566544467899999885
Q ss_pred ---CCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCC-CCcchhhcccccccc
Q 018109 100 ---EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP-TANDFGSEIIPASAN 175 (360)
Q Consensus 100 ---~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~-~~~~~~~~~l~~~i~ 175 (360)
.++|..+.|||..... .+.++++|+|+|++++|..+.+.... .......++++.+++
T Consensus 175 ~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~ 235 (267)
T cd02541 175 DGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLE 235 (267)
T ss_pred CCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHh
Confidence 2489999999864221 14688999999999999765331111 111123467888888
Q ss_pred cCceEEEEeCCceeecCCHHHHHHHHHHhh
Q 018109 176 EQFLKAYLFNDYWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 176 ~~~I~~~~~~g~w~digtp~~~~~a~~~~l 205 (360)
++++.+|+++|+|.|+|||++|+++++++.
T Consensus 236 ~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 236 EEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred cCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 789999999999999999999999999875
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-19 Score=162.90 Aligned_cols=151 Identities=23% Similarity=0.348 Sum_probs=122.0
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
.+||++|++++.++++. ++|+|++||. +++.|+.+++++|+++++++|+++.++++ ++.||++.+|++|+|
T Consensus 83 ~~G~~~al~~a~~~~~~------~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~g~v 154 (240)
T cd02538 83 PGGLAQAFIIGEEFIGD------DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVND--PERYGVVEFDENGRV 154 (240)
T ss_pred CCCHHHHHHHHHHhcCC------CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCc--hhcCceEEecCCCcE
Confidence 47999999999999863 7899999997 55778999999999888899999888876 568999999888899
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC-Ccch-hhcccccccccCceEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-ANDF-GSEIIPASANEQFLKA 181 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~-~~~~-~~~~l~~~i~~~~I~~ 181 (360)
+++.|||..+. +.+.++|+|+|++++|+. +++..+. ..++ ..++++.+++++++.+
T Consensus 155 ~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~-l~~~~~~~~~~~~l~d~~~~l~~~g~~~~ 212 (240)
T cd02538 155 LSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFEI-AKQLKPSARGELEITDVNNEYLEKGKLSV 212 (240)
T ss_pred EEEEECCCCCC---------------------CCeEEEEEEEECHHHHHH-HHhcCCCCCCeEEhHHHHHHHHHhCCeEE
Confidence 99999986542 458899999999999864 4543221 1111 2367777777777777
Q ss_pred EEeC--CceeecCCHHHHHHHHHHhh
Q 018109 182 YLFN--DYWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 182 ~~~~--g~w~digtp~~~~~a~~~~l 205 (360)
+.++ ++|+|||||++|.++++.+.
T Consensus 213 ~~~~~~g~w~digt~~~~~~a~~~~~ 238 (240)
T cd02538 213 ELLGRGFAWLDTGTHESLLEASNFVQ 238 (240)
T ss_pred EEeCCCcEEEeCCCHHHHHHHHHHHh
Confidence 7766 99999999999999998653
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-19 Score=164.96 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=117.1
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeec---CHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECC-
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN- 99 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~---dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~- 99 (360)
+.+||++|++++.+++. +++|+|++||.++.. ++++++++|+++++++ +++..++.+.+.+||++..|.
T Consensus 102 ~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~~~~~~~~~~~g~v~~d~~ 174 (260)
T TIGR01099 102 EQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDGEGV 174 (260)
T ss_pred CCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEEECChhhcccCceEEeccc
Confidence 46899999999999985 378999999998754 6999999999988875 556566544468899998862
Q ss_pred ---CCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCC-cchhhcccccccc
Q 018109 100 ---EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-NDFGSEIIPASAN 175 (360)
Q Consensus 100 ---~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~-~~~~~~~l~~~i~ 175 (360)
+++|+.+.|||..... .+.++++|+|+|++++|..+.+...... .....++++.+++
T Consensus 175 ~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~ 235 (260)
T TIGR01099 175 EEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLE 235 (260)
T ss_pred cCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHh
Confidence 3699999999953211 1468999999999999987643221111 1122367788888
Q ss_pred cCceEEEEeCCceeecCCHHHHHHH
Q 018109 176 EQFLKAYLFNDYWEDIGTIRSFFEA 200 (360)
Q Consensus 176 ~~~I~~~~~~g~w~digtp~~~~~a 200 (360)
++++.+|+++|||.|||||++|+++
T Consensus 236 ~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 236 KETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred cCCEEEEEcceEEEeCCCHHHHhhC
Confidence 8899999999999999999999864
|
Built to distinquish between the highly similar genes galU and galF |
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=163.03 Aligned_cols=150 Identities=19% Similarity=0.337 Sum_probs=121.1
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCcee-eecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i-~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
++|||+|+..+.+++.+ ++|++++||.+ ++.|+.+++++|.++++++|+++.++++ +++||++.+|++++|
T Consensus 86 ~~Gta~Al~~a~~~i~~------~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~--p~~yGvv~~d~~g~v 157 (292)
T PRK15480 86 PDGLAQAFIIGEEFIGG------DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVND--PERYGVVEFDQNGTA 157 (292)
T ss_pred CCCHHHHHHHHHHHhCC------CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCC--cccCcEEEECCCCcE
Confidence 58999999999999963 57999999974 5899999999999888889998888876 779999999988999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC---CcchhhcccccccccCceE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASANEQFLK 180 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~---~~~~~~~~l~~~i~~~~I~ 180 (360)
+.+.|||..+. +.++++|+|+|++++++.+ ++..+. ..++ .++++.+++++++.
T Consensus 158 ~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~~~-~~~~~~~~ge~~i-td~~~~~l~~g~~~ 214 (292)
T PRK15480 158 ISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVEMA-KNLKPSARGELEI-TDINRIYMEQGRLS 214 (292)
T ss_pred EEEEECCCCCC---------------------CCEEEEEEEEEChHHHHHH-hhcCCCCCCeeEh-HHHHHHHHhcCCeE
Confidence 99999997543 5789999999999998754 443222 1222 35677777776664
Q ss_pred E-EEeCC-ceeecCCHHHHHHHHHHhh
Q 018109 181 A-YLFND-YWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 181 ~-~~~~g-~w~digtp~~~~~a~~~~l 205 (360)
. +...+ +|+|+|||++|.+|+..+.
T Consensus 215 ~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 215 VAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred EEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 4 55567 5999999999999998775
|
|
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=163.65 Aligned_cols=151 Identities=22% Similarity=0.373 Sum_probs=121.5
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
++|||+|++.+.+++++ ++|++++||. +++.|+.++++.|.++++++|++..++++ +++||++.+|++++|
T Consensus 82 ~~Gta~al~~a~~~l~~------~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~--p~~yGvv~~d~~g~V 153 (286)
T TIGR01207 82 PDGLAQAFIIGEDFIGG------DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSD--PERYGVVEFDSNGRA 153 (286)
T ss_pred CCCHHHHHHHHHHHhCC------CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccC--HHHCceEEECCCCeE
Confidence 58999999999999974 7899999997 56889999999999888889999988876 678999999988999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC-Ccch-hhcccccccccCceEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-ANDF-GSEIIPASANEQFLKA 181 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~-~~~~-~~~~l~~~i~~~~I~~ 181 (360)
+++.|||..+. ++++++|+|+|++++++. ++...+. ..++ ..++++.+++++++..
T Consensus 154 ~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~~-l~~~~~~~~ge~eitdv~~~~l~~g~l~v 211 (286)
T TIGR01207 154 ISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVEI-ARQLKPSARGELEITDLNRVYLEEGRLSV 211 (286)
T ss_pred EEEEECCCCCC---------------------CCEEEEEEEEEchHHHHH-HhhcCCCCCCcEeHHHHHHHHHHcCCcEE
Confidence 99999996542 568999999999999864 4443221 1111 2366777777766666
Q ss_pred EEe-CCc-eeecCCHHHHHHHHHHhh
Q 018109 182 YLF-NDY-WEDIGTIRSFFEANLALT 205 (360)
Q Consensus 182 ~~~-~g~-w~digtp~~~~~a~~~~l 205 (360)
+.+ .|+ |+|+|||++|++|+..+.
T Consensus 212 ~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 212 ELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 555 576 999999999999998764
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-18 Score=155.91 Aligned_cols=170 Identities=24% Similarity=0.360 Sum_probs=133.3
Q ss_pred CCcEEEeeCcccCCCCC------------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHH
Q 018109 5 TGNSQVLAATQTPGEAG------------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDF 66 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~------------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~l 66 (360)
.|+.+++++.++..+.. .++++||+++++.+..++++ ++|++++||.+++.++.++
T Consensus 44 ~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~sl~~a~~~i~~------~~~li~~~D~~~~~~~~~~ 117 (236)
T cd04189 44 AGIEDIGIVVGPTGEEIKEALGDGSRFGVRITYILQEEPLGLAHAVLAARDFLGD------EPFVVYLGDNLIQEGISPL 117 (236)
T ss_pred CCCCEEEEEcCCCHHHHHHHhcchhhcCCeEEEEECCCCCChHHHHHHHHHhcCC------CCEEEEECCeecCcCHHHH
Confidence 47777777766533211 12347999999999998863 7899999999999999999
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEE
Q 018109 67 VQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 146 (360)
Q Consensus 67 l~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyif 146 (360)
++.|.++++++++++.+.++ +..||++.+| +++|..+.|||..+. +.+.++|+|+|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~d-~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~ 173 (236)
T cd04189 118 VRDFLEEDADASILLAEVED--PRRFGVAVVD-DGRIVRLVEKPKEPP---------------------SNLALVGVYAF 173 (236)
T ss_pred HHHHHhcCCceEEEEEECCC--cccceEEEEc-CCeEEEEEECCCCCC---------------------CCEEEEEEEEe
Confidence 99999999999998888766 5679988887 459999999986432 35789999999
Q ss_pred eHHHHHHHHHhhCCC---Ccchhhccccccccc-CceEEEEeCCceeecCCHHHHHHHHHHhhc
Q 018109 147 KKEILLNLLRWRFPT---ANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 147 s~~vl~~ll~~~~~~---~~~~~~~~l~~~i~~-~~I~~~~~~g~w~digtp~~~~~a~~~~l~ 206 (360)
++++|+.+ +...+. ... ..++++.++++ .+|.+|+.+++|.|+|||++|.++++.+|+
T Consensus 174 ~~~~~~~l-~~~~~~~~~~~~-~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 174 TPAIFDAI-SRLKPSWRGELE-ITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred CHHHHHHH-HhcCCCCCCeEE-HHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 99999764 432221 111 24677777754 579999999999999999999999999886
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=157.76 Aligned_cols=160 Identities=14% Similarity=0.207 Sum_probs=127.5
Q ss_pred CCCcEEEeeCcccCCCCCC-----------------c-cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHH
Q 018109 4 LTGNSQVLAATQTPGEAGK-----------------R-WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~~-----------------~-~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ 65 (360)
..|+.+|+++.++.++... . ..+||+++|+.+..++++ ++|+|++||++++.|+.+
T Consensus 42 ~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~~------~~~lv~~~D~i~~~~~~~ 115 (221)
T cd06422 42 AAGIRRIVVNTHHLADQIEAHLGDSRFGLRITISDEPDELLETGGGIKKALPLLGD------EPFLVVNGDILWDGDLAP 115 (221)
T ss_pred HCCCCEEEEEccCCHHHHHHHHhcccCCceEEEecCCCcccccHHHHHHHHHhcCC------CCEEEEeCCeeeCCCHHH
Confidence 4578888888877544211 1 357999999999999863 789999999999999999
Q ss_pred HHHHHH--HcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeE
Q 018109 66 FVQNHR--QSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGV 143 (360)
Q Consensus 66 ll~~h~--~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GI 143 (360)
+++.|+ +.++.+++...+.+. ...||.+.+|++++|..+.|+|.. .+.++|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Gi 169 (221)
T cd06422 116 LLLLHAWRMDALLLLLPLVRNPG--HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGI 169 (221)
T ss_pred HHHHHHhccCCCceEEEEEEcCC--CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEE
Confidence 999998 466667776666554 678999999888899999888742 4789999
Q ss_pred EEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEeCCceeecCCHHHHHHH
Q 018109 144 YLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 200 (360)
Q Consensus 144 yifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a 200 (360)
|+|++++|..+.+. .. ...++++.+++++++.+|..+++|.|+|||++|.+|
T Consensus 170 yi~~~~~l~~l~~~----~~-~~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 170 QILSPELFAGIPPG----KF-SLNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred EEEcHHHHhhCCcC----cc-cHHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 99999999875322 11 234688888888899999999999999999999764
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.2e-18 Score=152.48 Aligned_cols=163 Identities=28% Similarity=0.455 Sum_probs=130.3
Q ss_pred CCcEEEeeCcccCCCCC------------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHH
Q 018109 5 TGNSQVLAATQTPGEAG------------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDF 66 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~------------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~l 66 (360)
.|+.+++++.++..+.. +...+||+++++.+..++. +++|++++||.+++.++.++
T Consensus 42 ~g~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~ 115 (223)
T cd06915 42 QGISRIVLSVGYLAEQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLAL 115 (223)
T ss_pred CCCCEEEEEcccCHHHHHHHHcCccccCceEEEEECCCCCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHH
Confidence 46777777776533210 0124799999999999885 38999999999999999999
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEE
Q 018109 67 VQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 146 (360)
Q Consensus 67 l~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyif 146 (360)
++.|++.++++++++.+.++ +..|+.+.+|++++|..+.|||.... +.++++|+|+|
T Consensus 116 l~~~~~~~~~~~~~~~~~~~--~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~ 172 (223)
T cd06915 116 LAALRASGADATMALRRVPD--ASRYGNVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLL 172 (223)
T ss_pred HHHHHhCCCcEEEEEEECCC--CCcceeEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEE
Confidence 99999888888888888765 46789888888889999999876431 46889999999
Q ss_pred eHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEeCCceeecCCHHHHHHH
Q 018109 147 KKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 200 (360)
Q Consensus 147 s~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a 200 (360)
++++|..+ ... ..++..++++.+++++++.+|+++++|+||+||++|.+|
T Consensus 173 ~~~~l~~~-~~~---~~~~~~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 173 RKEILAEI-PAD---AFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred CHHHHhhC-Ccc---CCChHHHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence 99999764 322 223456788888877799999999999999999999887
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=149.81 Aligned_cols=138 Identities=34% Similarity=0.587 Sum_probs=116.3
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
.+||+++|+.+..++. +++|+|++||++++.|+.++++.|+++++++++++.+.+. +.+||++.+|++++|.
T Consensus 80 ~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~d~~~~v~ 151 (217)
T cd04181 80 PLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVED--PSRYGVVELDDDGRVT 151 (217)
T ss_pred CCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCC--CCcceEEEEcCCCcEE
Confidence 4799999999999884 4899999999999999999999999999999999988774 6789999998889999
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEe
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF 184 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~ 184 (360)
++.|||.... ..++++|+|+|++++|+. +++.......+..++++.++++.++.+|++
T Consensus 152 ~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~ 209 (217)
T cd04181 152 RFVEKPTLPE---------------------SNLANAGIYIFEPEILDY-IPEILPRGEDELTDAIPLLIEEGKVYGYPV 209 (217)
T ss_pred EEEECCCCCC---------------------CCEEEEEEEEECHHHHHh-hhhcCCcccccHHHHHHHHHhcCCEEEEEc
Confidence 9999987532 368999999999999964 454322223455678888888899999999
Q ss_pred CCceeecC
Q 018109 185 NDYWEDIG 192 (360)
Q Consensus 185 ~g~w~dig 192 (360)
+|+|+|+|
T Consensus 210 ~g~w~dig 217 (217)
T cd04181 210 DGYWLDIG 217 (217)
T ss_pred CCEEecCC
Confidence 99999987
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-18 Score=155.96 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=123.1
Q ss_pred CCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec------------eEE
Q 018109 210 MFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD------------TMM 275 (360)
Q Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~------------~~~ 275 (360)
+++++++.+.+.+++.|+|.+.+.+ ++.||++|.|. ++.|. +++||++|.|++++.|+. .++
T Consensus 7 p~a~I~~~a~Ig~~v~Igp~~~I~~----~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~ 82 (262)
T PRK05289 7 PTAIVEPGAKIGENVEIGPFCVIGP----NVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLV 82 (262)
T ss_pred CCCEECCCCEECCCCEECCCeEECC----CCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEE
Confidence 3455666666666666666666644 78889999988 77775 799999999999999986 689
Q ss_pred ECCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EE
Q 018109 276 LGADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VI 348 (360)
Q Consensus 276 ~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~i 348 (360)
+|++..+++ ++|++++..++..+.||++|.|. +++|+++|.||+++++++...+.++++|+|+++|+.+++ .|
T Consensus 83 IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~I 162 (262)
T PRK05289 83 IGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRI 162 (262)
T ss_pred ECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEE
Confidence 999988888 88888875444559999999997 899999999999999999999999999999999997774 67
Q ss_pred cCCcEeCCCccC
Q 018109 349 LKNSVITDGFVI 360 (360)
Q Consensus 349 g~~~~i~~g~~i 360 (360)
|+++.|++|++|
T Consensus 163 g~~~~Ig~gs~V 174 (262)
T PRK05289 163 GAHAMVGGMSGV 174 (262)
T ss_pred CCCCEEeeecce
Confidence 888999988875
|
|
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=153.79 Aligned_cols=145 Identities=17% Similarity=0.207 Sum_probs=121.5
Q ss_pred CCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec------------eEEE
Q 018109 211 FSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD------------TMML 276 (360)
Q Consensus 211 ~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~------------~~~~ 276 (360)
++.+++++.+..++.|+|+|.+.+ ++.||++|.|. ++.|. ++.||++|.|++++.|+. .+++
T Consensus 5 ~a~I~~~a~Ig~~v~Igp~~~I~~----~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~I 80 (255)
T PRK12461 5 TAVIDPSAKLGSGVEIGPFAVIGA----NVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEI 80 (255)
T ss_pred CCEECCCCEECCCCEECCCCEECC----CCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEE
Confidence 455666666666666666666643 78888999888 77775 799999999999999985 6889
Q ss_pred CCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EEc
Q 018109 277 GADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VIL 349 (360)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig 349 (360)
|++..+++ ++|++++..| ..++||++|.|. +++|+++|.||++|++++.+.+.++++|+|+++|+.++. .||
T Consensus 81 G~~~~I~e~vtI~~gt~~g-~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG 159 (255)
T PRK12461 81 GDRNVIREGVTIHRGTKGG-GVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIG 159 (255)
T ss_pred CCceEECCccEEecCcccC-CcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEEC
Confidence 99999999 8999988443 349999999996 899999999999999999999999999999999998874 678
Q ss_pred CCcEeCCCccC
Q 018109 350 KNSVITDGFVI 360 (360)
Q Consensus 350 ~~~~i~~g~~i 360 (360)
++++|++|++|
T Consensus 160 ~~a~Vg~gs~V 170 (255)
T PRK12461 160 ALAMMAGGSRI 170 (255)
T ss_pred CCcEECCCceE
Confidence 88888888764
|
|
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-17 Score=145.92 Aligned_cols=160 Identities=23% Similarity=0.389 Sum_probs=124.5
Q ss_pred CCcEEEeeCcccCCCCC------------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHH
Q 018109 5 TGNSQVLAATQTPGEAG------------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDF 66 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~------------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~l 66 (360)
.|+.+++++.++..++. ++.++||+++++.+.+... ++|+|++||.+++.++.++
T Consensus 42 ~~~~~iivv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~~~~~-------~~~lv~~~D~i~~~~~~~l 114 (220)
T cd06426 42 QGFRNFYISVNYLAEMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLPEKPT-------DPFLVMNGDILTNLNYEHL 114 (220)
T ss_pred CCCcEEEEECccCHHHHHHHHCCccccCccEEEEECCCCCcchHHHHHHHhhCC-------CCEEEEcCCEeeccCHHHH
Confidence 57788888777644311 1235799999988876553 7899999999999999999
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEE
Q 018109 67 VQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 146 (360)
Q Consensus 67 l~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyif 146 (360)
++.|++.++++++++.+... ...||++..|. ++|+++.|||.. +.++++|+|+|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~d~-~~v~~~~ek~~~-----------------------~~~~~~Giy~~ 168 (220)
T cd06426 115 LDFHKENNADATVCVREYEV--QVPYGVVETEG-GRITSIEEKPTH-----------------------SFLVNAGIYVL 168 (220)
T ss_pred HHHHHhcCCCEEEEEEEcCC--CCcceEEEECC-CEEEEEEECCCC-----------------------CCeEEEEEEEE
Confidence 99999998889988877543 45699988874 899999998753 34789999999
Q ss_pred eHHHHHHHHHhhCCCCcchhhccccccccc-CceEEEEeCCceeecCCHHHHHHHH
Q 018109 147 KKEILLNLLRWRFPTANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN 201 (360)
Q Consensus 147 s~~vl~~ll~~~~~~~~~~~~~~l~~~i~~-~~I~~~~~~g~w~digtp~~~~~a~ 201 (360)
++++|..+ ++. ...+ ..++++.++++ .++.+|+++++|+|+|||++|.+|+
T Consensus 169 ~~~~~~~i-~~~--~~~~-l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 169 EPEVLDLI-PKN--EFFD-MPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred cHHHHhhc-CCC--CCcC-HHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 99998754 321 1112 24677777765 5799999999999999999999874
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=144.67 Aligned_cols=155 Identities=21% Similarity=0.287 Sum_probs=126.0
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC---HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEE----E
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD---YMDFVQNHRQSGADITISCLPMDDSRASDFGLMK----I 97 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d---l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~----~ 97 (360)
++|.|||+++|++++.+ |+|+|+.+|.++..+ +.+|++.|.+.+.. ++++.+++.++.++||++. .
T Consensus 107 ~~GLGhAVl~A~~~vg~------EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~ 179 (291)
T COG1210 107 PLGLGHAVLCAKPFVGD------EPFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPV 179 (291)
T ss_pred CCcchhHHHhhhhhcCC------CceEEEeCCeeecCCchHHHHHHHHHHHhCCc-EEEEEECCHHHCcccceEecCccc
Confidence 47999999999999985 999999999988753 79999999998874 6777888776689999987 3
Q ss_pred CCC-CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccc----c
Q 018109 98 NNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIP----A 172 (360)
Q Consensus 98 d~~-g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~----~ 172 (360)
+++ .+|..++|||+...+ .+++...|-|+|+|++|+. |++..+.. -++-.|+ .
T Consensus 180 ~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GRYil~p~IFd~-L~~~~~G~--ggEiQLTDai~~ 237 (291)
T COG1210 180 EKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGRYVLTPEIFDI-LEETKPGA--GGEIQLTDAIKK 237 (291)
T ss_pred cCCeEEEEEEEECCCCCCC-------------------CcceeeeeeeecCHHHHHH-HhhCCCCC--CCEeeHHHHHHH
Confidence 333 489999999976653 3689999999999999975 57654331 2233444 4
Q ss_pred ccccCceEEEEeCCceeecCCHHHHHHHHHHhhcCC
Q 018109 173 SANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 208 (360)
Q Consensus 173 ~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~ 208 (360)
+++...+.+|.++|..+|+|++..|++|+..+..+.
T Consensus 238 L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 238 LLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred HHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 556799999999999999999999999999887654
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-16 Score=143.95 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=108.4
Q ss_pred CCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec------------eEEE
Q 018109 211 FSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD------------TMML 276 (360)
Q Consensus 211 ~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~------------~~~~ 276 (360)
++.+++++.+.+++.|+|.+.+.+ ++.||++|.|. ++.|. +++||++|.|++++.|+. .+.+
T Consensus 5 ~a~I~~~a~ig~~~~I~p~~~I~~----~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~I 80 (254)
T cd03351 5 TAIVDPGAKIGENVEIGPFCVIGP----NVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEI 80 (254)
T ss_pred CCEECCCCEECCCCEECCCcEECC----CCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEE
Confidence 345566666666666666665533 56677777777 56664 678888888888888864 6777
Q ss_pred CCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EEc
Q 018109 277 GADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VIL 349 (360)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig 349 (360)
|++.+..+ +.+++++..++..+.||++|.|. ++.|+++|.||+++.+.+...+..+++|+|+++|+.+++ .||
T Consensus 81 G~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig 160 (254)
T cd03351 81 GDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIG 160 (254)
T ss_pred CCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEEC
Confidence 77666665 56666654443459999999997 899999999999999999988888889999999987764 667
Q ss_pred CCcEeCCCccC
Q 018109 350 KNSVITDGFVI 360 (360)
Q Consensus 350 ~~~~i~~g~~i 360 (360)
+++.|+++++|
T Consensus 161 ~~~~Ig~~s~V 171 (254)
T cd03351 161 RHAMVGGGSGV 171 (254)
T ss_pred CCCEECcCCEE
Confidence 88888888764
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=138.10 Aligned_cols=146 Identities=17% Similarity=0.173 Sum_probs=101.2
Q ss_pred CCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec------------eEEE
Q 018109 211 FSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD------------TMML 276 (360)
Q Consensus 211 ~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~------------~~~~ 276 (360)
..++++.+.+.+++.|+|.+.+.+ ++.|++++.|+ ++.|. +++||++|.|++++.|+. .+++
T Consensus 4 ~a~I~~~a~Ig~~~~I~~~~~I~~----~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~I 79 (254)
T TIGR01852 4 TAIIEPGAEIGENVEIGPFCIVGP----GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELII 79 (254)
T ss_pred CCEeCCCCEECCCCEECCCCEECC----CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEE
Confidence 345556666666666666665533 45555566555 44443 577777777777777763 5666
Q ss_pred CCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EEc
Q 018109 277 GADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VIL 349 (360)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig 349 (360)
|++....+ +.|+++...|..++.||+++.|. ++.|+++|.||+++.+.+...+..+++|+|+++|+.+++ .||
T Consensus 80 G~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig 159 (254)
T TIGR01852 80 GDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIG 159 (254)
T ss_pred CCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEEC
Confidence 76655555 55555544433348999999996 788888888888888888888888888888888887764 567
Q ss_pred CCcEeCCCccC
Q 018109 350 KNSVITDGFVI 360 (360)
Q Consensus 350 ~~~~i~~g~~i 360 (360)
+++.|+++++|
T Consensus 160 ~~~~Ig~~s~V 170 (254)
T TIGR01852 160 RYAMIGGLSAV 170 (254)
T ss_pred CCCEEeeeeeE
Confidence 78888887764
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.1e-15 Score=133.76 Aligned_cols=131 Identities=24% Similarity=0.306 Sum_probs=73.3
Q ss_pred hcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhhcCCCC-C---CccCCCC-ceeccCCCCCCceecCceeeceE
Q 018109 167 SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPM-F---SFYDATK-PIYTSRRNLPPSKIDDSKIVDSI 241 (360)
Q Consensus 167 ~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~~~-~---~~~~~~~-~v~~~~~~~~~~~~~~~~i~~~~ 241 (360)
.+.++.+++.+ ++...|||.|+ ++|+++++++|..... . ....+.. .+..++.+.+.+.+.+ ++.
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g----~v~ 100 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRD----QVI 100 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeC----CeE
Confidence 46777777655 88889999999 9999999999986421 0 0000001 0122222333222211 345
Q ss_pred ECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEee---------eE
Q 018109 242 ISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CI 310 (360)
Q Consensus 242 i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~---------~~ 310 (360)
||++|.|+ ++.|. +++||++|.|++++.|+..+++|++ |.||.++.|.+ +.
T Consensus 101 IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~------------------~~Ig~~~~I~~~~~~~~~~~v~ 162 (231)
T TIGR03532 101 IGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKN------------------VHIGAGAVLAGVIEPPSAKPVV 162 (231)
T ss_pred ECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCC------------------cEEcCCcEEccccccccCCCeE
Confidence 55555554 44443 4566666666666666555555554 66666666642 55
Q ss_pred ecCCCEECCCcEEec
Q 018109 311 IDKNARIGKNVIIAN 325 (360)
Q Consensus 311 i~~~~~ig~~~~~~~ 325 (360)
||++|.||+++++..
T Consensus 163 IGd~v~IG~gsvI~~ 177 (231)
T TIGR03532 163 IEDNVLIGANAVILE 177 (231)
T ss_pred ECCCcEECCCCEEcC
Confidence 555555555555544
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-14 Score=130.08 Aligned_cols=143 Identities=20% Similarity=0.307 Sum_probs=109.7
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
..+||+++++++...++. +++|++++||++++.++.++++.|.+.+++.++++...+ ..+||.+.+|++++|
T Consensus 80 ~~~g~~~~l~~a~~~l~~-----~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~v~~d~~~~v 151 (231)
T cd04183 80 ETLGAACTVLLAADLIDN-----DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS---HPRWSYVKLDENGRV 151 (231)
T ss_pred CCCcHHHHHHHHHhhcCC-----CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---CCCeEEEEECCCCCE
Confidence 357999999999998852 378999999999999999999999887777777666552 347999999888999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH-HHHHHHHhhC----CCCcc-hhhccccccccc-
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE-ILLNLLRWRF----PTAND-FGSEIIPASANE- 176 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~-vl~~ll~~~~----~~~~~-~~~~~l~~~i~~- 176 (360)
..+.||+.. +.+.++|+|+|+++ .|.+.++... ..... +..+.++.++++
T Consensus 152 ~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g 208 (231)
T cd04183 152 IETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDG 208 (231)
T ss_pred EEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcC
Confidence 999988531 34789999999998 5555555311 11111 224567777765
Q ss_pred CceEEEEe-CCceeecCCHHHH
Q 018109 177 QFLKAYLF-NDYWEDIGTIRSF 197 (360)
Q Consensus 177 ~~I~~~~~-~g~w~digtp~~~ 197 (360)
.++.+|.+ +++|.|+|||++|
T Consensus 209 ~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 209 KKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred CEEEEEEeccccEEEcCChHhc
Confidence 57999999 6999999999987
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=125.95 Aligned_cols=145 Identities=23% Similarity=0.297 Sum_probs=99.3
Q ss_pred ccCCCCceeccCCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchh-HHHHh
Q 018109 213 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETD-AEVAS 289 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~~ 289 (360)
.+++.+.+.+.+.++++|.+ ..+.|.++.|+++|.|. ++.+.+++||+++.|++++.|...++++++-.... ++++.
T Consensus 23 ~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~ 102 (193)
T cd03353 23 VIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKK 102 (193)
T ss_pred EECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEec
Confidence 44555556666667777777 56777778899999998 77788888888888888877776555654311111 11111
Q ss_pred h-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccc-ccccCCceEEeCCe-----EEEcCCcEeCCCccC
Q 018109 290 L-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGV-----TVILKNSVITDGFVI 360 (360)
Q Consensus 290 ~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~-----~~ig~~~~i~~g~~i 360 (360)
. +.+| +.+++.+.+.+|+||++|.||+++.+.+...... ..+++|+++|+.++ ++||+++.|++|++|
T Consensus 103 s~ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V 177 (193)
T cd03353 103 STIGEG---SKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 177 (193)
T ss_pred ceEcCC---CEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEE
Confidence 1 2222 5556666667789999999999998887665544 34778888887775 377899999999875
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.2e-15 Score=132.12 Aligned_cols=139 Identities=17% Similarity=0.275 Sum_probs=105.1
Q ss_pred CCcEEEeeCcccCCCCCC-----------------------ccccccHHHHHHHh--HhhcCCCCCCCCeEEEEcCceee
Q 018109 5 TGNSQVLAATQTPGEAGK-----------------------RWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLY 59 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~~-----------------------~~~lGTa~al~~a~--~~i~~~~~~~~~~fLVv~gD~i~ 59 (360)
+|+++|+++.++..+.+. +...|||+|++... ..+ .++|++++||+++
T Consensus 44 ~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~ 116 (217)
T cd04197 44 NGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDALRDLDAKGLI-------RGDFILVSGDVVS 116 (217)
T ss_pred CCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEEEEeCCCcCccchHHHHHhhcccc-------CCCEEEEeCCeee
Confidence 688888887775444221 12368999997653 334 3689999999999
Q ss_pred ecCHHHHHHHHHHc-----CCcEEEEEeecCCCCC----CcccEEEECCC-CceEEEEecCCcccccccccccccccccc
Q 018109 60 RMDYMDFVQNHRQS-----GADITISCLPMDDSRA----SDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSK 129 (360)
Q Consensus 60 ~~dl~~ll~~h~~~-----~a~~tll~~~~~~~~~----~~~g~v~~d~~-g~V~~~~ekp~~~~~~~~~i~~~~~~~~~ 129 (360)
+.|+.+++++|+++ ++++|+++.+++.++. ..++++.+|++ ++|+.|.|||..+......++..++..++
T Consensus 117 ~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~ 196 (217)
T cd04197 117 NIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNS 196 (217)
T ss_pred ccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCC
Confidence 99999999999984 7899999998876432 23678888765 79999999998766445566776676666
Q ss_pred ccccccCceeeeeEEEEeHHHH
Q 018109 130 QEAEEKPYIASMGVYLFKKEIL 151 (360)
Q Consensus 130 ~~~~~~~~~~~~GIyifs~~vl 151 (360)
... ..+++.++|+|+|+|++|
T Consensus 197 ~~~-i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 197 EVE-IRHDLLDCHIDICSPDVL 217 (217)
T ss_pred cEE-EECCceecCEEEeCCCCC
Confidence 554 468999999999999864
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.7e-14 Score=134.14 Aligned_cols=63 Identities=33% Similarity=0.355 Sum_probs=54.0
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCe-----EEEcCCcEeCCCccC
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV-----TVILKNSVITDGFVI 360 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~ig~~~~i~~g~~i 360 (360)
+.||+++.|. .+.|+++|+||++|.+.+..++.++.+++++++++.++ +.||+++.|+++++|
T Consensus 218 t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 218 TIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred ceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 7777777776 58899999999999999999999999999999997666 377899999998865
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.5e-14 Score=134.06 Aligned_cols=119 Identities=21% Similarity=0.194 Sum_probs=81.5
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec-------------------eEEECCcccchh-HHHHhhhhCCCc
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD-------------------TMMLGADFYETD-AEVASLLAEGRV 296 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~-------------------~~~~~~~~~~~~-~~~~~~~~~~~~ 296 (360)
++.||++|.|. +++|. ++.||++|.|++++.|+. .+++|++-.+.. .+|.|+..++
T Consensus 148 ~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~-- 225 (343)
T PRK00892 148 GVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDD-- 225 (343)
T ss_pred CcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCcccc--
Confidence 34455555555 45553 344666666666666642 345554322211 3344443332
Q ss_pred ceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EEcCCcEeCCCccC
Q 018109 297 PVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 297 ~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~i 360 (360)
+.||++|.|. .+.|+++|+||+++.+...+.+.+++++|++++|+.++. .||+++.|+++++|
T Consensus 226 -t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v 294 (343)
T PRK00892 226 -TVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV 294 (343)
T ss_pred -ceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCee
Confidence 8888888887 589999999999999999999999999999999987774 57888888888764
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=119.45 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=95.8
Q ss_pred CCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhh
Q 018109 215 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL 290 (360)
Q Consensus 215 ~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 290 (360)
.+.+.+.+.+.+++++.+ .++.+. +++||++|.|+ ++.|. +++||++|.|++++.|.++++ +++
T Consensus 9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~sii-g~~----------- 76 (163)
T cd05636 9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSII-MDG----------- 76 (163)
T ss_pred CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEe-cCC-----------
Confidence 344455555556666666 445554 68999999998 77786 699999999999999988765 444
Q ss_pred hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCc------------------ccccccCCceEEeCCeE-----E
Q 018109 291 LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGI------------------QEADRSAEGFYIRSGVT-----V 347 (360)
Q Consensus 291 ~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~------------------~~~~~~~~~~~i~~~~~-----~ 347 (360)
+.|++++.+.+++|+++++|++++.+.+.... .....++|+++|+.+++ +
T Consensus 77 -------~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ 149 (163)
T cd05636 77 -------TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVK 149 (163)
T ss_pred -------CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcE
Confidence 99999999999999999999999999763211 01346777777776653 6
Q ss_pred EcCCcEeCCCccC
Q 018109 348 ILKNSVITDGFVI 360 (360)
Q Consensus 348 ig~~~~i~~g~~i 360 (360)
||+++.|++|++|
T Consensus 150 ig~~~~i~agsvV 162 (163)
T cd05636 150 IGPGSWVYPGCVV 162 (163)
T ss_pred ECCCCEECCCcEe
Confidence 6888888888875
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-14 Score=128.58 Aligned_cols=164 Identities=16% Similarity=0.166 Sum_probs=115.4
Q ss_pred CCcEEEeeCcccCCCCCC---------------cc-ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHH
Q 018109 5 TGNSQVLAATQTPGEAGK---------------RW-FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQ 68 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~~---------------~~-~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~ 68 (360)
.|+.+|+++.++..+... .| .+|++++++.+..++. ++|++++||++++. ++++
T Consensus 42 ~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~ 111 (229)
T cd02523 42 AGIDDIVIVTGYKKEQIEELLKKYPNIKFVYNPDYAETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILE 111 (229)
T ss_pred CCCceEEEEeccCHHHHHHHHhccCCeEEEeCcchhhhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHH
Confidence 578888888887543211 11 4799999999999883 78999999999865 5677
Q ss_pred HHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeH
Q 018109 69 NHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKK 148 (360)
Q Consensus 69 ~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~ 148 (360)
.|.++++++++++.+...+....++....+ ++++..+.+||..+. ...+.++|+|+|++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~ 170 (229)
T cd02523 112 RLLSSPADNAILVDKKTKEWEDEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSP 170 (229)
T ss_pred HHHcCCCCCeEEEccCcccccccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECH
Confidence 778888888988887443323445544333 378999999886542 13578999999999
Q ss_pred HHHHHHHHhh---CC--CCcchhhcccccccccC--ceEEEEeCCceeecCCHHHHHHH
Q 018109 149 EILLNLLRWR---FP--TANDFGSEIIPASANEQ--FLKAYLFNDYWEDIGTIRSFFEA 200 (360)
Q Consensus 149 ~vl~~ll~~~---~~--~~~~~~~~~l~~~i~~~--~I~~~~~~g~w~digtp~~~~~a 200 (360)
++|..+.+.. .+ ....+.+++++.++++. ++..+.. ++|.|||+|++|.++
T Consensus 171 ~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a 228 (229)
T cd02523 171 EDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERA 228 (229)
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhh
Confidence 9987654321 11 12233457778877733 4445555 899999999999876
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.8e-14 Score=130.12 Aligned_cols=115 Identities=26% Similarity=0.330 Sum_probs=79.2
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec-------------------eEEECCcccchh--HHHHhh-hhCC
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD-------------------TMMLGADFYETD--AEVASL-LAEG 294 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~-------------------~~~~~~~~~~~~--~~~~~~-~~~~ 294 (360)
++.||++|.|. ++.|. ++.||++|.|++++.|+. .+++|++ +|== .+|-|+ +.+
T Consensus 147 ~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~-VeIGanT~Idrga~~d- 224 (338)
T COG1044 147 NVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDD-VEIGANTTIDRGALDD- 224 (338)
T ss_pred CcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECCc-eEEcccceeccccccC-
Confidence 45555555555 45553 477777777777777662 3444432 1110 445555 333
Q ss_pred CcceEECCCCeEee-eEecCCCEECCCcEEecCCCcccccccCCceEEeCCe-----EEEcCCcEeCCCc
Q 018109 295 RVPVGIGENTKIKE-CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV-----TVILKNSVITDGF 358 (360)
Q Consensus 295 ~~~~~ig~~~~i~~-~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~ig~~~~i~~g~ 358 (360)
|.||++++|.| +.|+|+|+||.+|.+....++.+...||+++.|+..+ ..||+++.|++.+
T Consensus 225 ---TvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~ 291 (338)
T COG1044 225 ---TVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARS 291 (338)
T ss_pred ---ceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEeccc
Confidence 88888999975 9999999999999999999999999999999998655 3556666666654
|
|
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=129.12 Aligned_cols=155 Identities=21% Similarity=0.307 Sum_probs=107.6
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeee--cCHHHHHHHHHH---cCCcEEEEEeecCCCCCCcccEEEECC
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNHRQ---SGADITISCLPMDDSRASDFGLMKINN 99 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~--~dl~~ll~~h~~---~~a~~tll~~~~~~~~~~~~g~v~~d~ 99 (360)
.+||++|++.+..++.+. ..++.++|++||+++. .+|.++++.+.+ +++.+|+.+.+... .+.||++..++
T Consensus 83 ~~gTa~ai~~a~~~~~~~--~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~--~t~yGyI~~~~ 158 (274)
T cd02509 83 GRNTAPAIALAALYLAKR--DPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRP--ETGYGYIEAGE 158 (274)
T ss_pred CCCcHHHHHHHHHHHHhc--CCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCC--CCCeEEEEeCC
Confidence 479999999999988631 1246899999999875 567777765443 66788888877643 47899999875
Q ss_pred CC-----ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcch---------
Q 018109 100 EG-----RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF--------- 165 (360)
Q Consensus 100 ~g-----~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~--------- 165 (360)
+. +|.+|.|||+...++ +......+++|+|+|+|+++.|...++...|+....
T Consensus 159 ~~~~~~~~V~~f~EKP~~~~a~-------------~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~ 225 (274)
T cd02509 159 KLGGGVYRVKRFVEKPDLETAK-------------EYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAG 225 (274)
T ss_pred cCCCCceEEeEEEECcChHHHH-------------HHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcC
Confidence 53 899999999865421 111112468999999999998877776654432111
Q ss_pred -------hhccccc---------ccc-cCceEEEEeCCceeecCCHHH
Q 018109 166 -------GSEIIPA---------SAN-EQFLKAYLFNDYWEDIGTIRS 196 (360)
Q Consensus 166 -------~~~~l~~---------~i~-~~~I~~~~~~g~w~digtp~~ 196 (360)
..+.++. +++ ..++++++.+..|.|+|+|++
T Consensus 226 ~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 226 TDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred CchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 0111221 122 366888899999999999975
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-13 Score=120.34 Aligned_cols=110 Identities=47% Similarity=0.791 Sum_probs=89.7
Q ss_pred ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCc
Q 018109 23 RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 102 (360)
Q Consensus 23 ~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 102 (360)
++.+|||+||+.+.+++++ ..+++|+|++||++++.++.++++.|+++++++|+++.
T Consensus 90 ~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~-------------------- 146 (200)
T cd02508 90 DWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK-------------------- 146 (200)
T ss_pred CcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh--------------------
Confidence 4568999999999999963 11378999999999999999999999999988887664
Q ss_pred eEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCC-CCcchhhcccccccccCceEE
Q 018109 103 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP-TANDFGSEIIPASANEQFLKA 181 (360)
Q Consensus 103 V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~-~~~~~~~~~l~~~i~~~~I~~ 181 (360)
. ++|+|+|++++|..+++.... ...+...++++.++++.++.+
T Consensus 147 -----------~-------------------------~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v~~ 190 (200)
T cd02508 147 -----------A-------------------------SMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYA 190 (200)
T ss_pred -----------h-------------------------cCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccCcEEE
Confidence 1 679999999999766665322 123455688888998899999
Q ss_pred EEeCCceeec
Q 018109 182 YLFNDYWEDI 191 (360)
Q Consensus 182 ~~~~g~w~di 191 (360)
|+++|+|.|+
T Consensus 191 ~~~~g~w~di 200 (200)
T cd02508 191 YEFNGYWADI 200 (200)
T ss_pred EEeCCeEecC
Confidence 9999999986
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=120.22 Aligned_cols=164 Identities=16% Similarity=0.190 Sum_probs=107.1
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCcEEEEEeecCC----CCCCcccEEEE
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLPMDD----SRASDFGLMKI 97 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~-~dl~~ll~~h~~~~a~~tll~~~~~~----~~~~~~g~v~~ 97 (360)
++.||++....+. .++. ...+.+++++||. +.+ .+++++++.|+++++++++++.+..+ ..+..++++ +
T Consensus 72 ~~~gt~~~~~~~~-~~~~---~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~ 146 (245)
T PRK05450 72 HPSGTDRIAEAAA-KLGL---ADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-L 146 (245)
T ss_pred CCCchHHHHHHHH-hcCC---CCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-e
Confidence 3568887554443 3321 0136799999999 554 45899999998777777777666532 235567755 8
Q ss_pred CCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchh--hcccccccc
Q 018109 98 NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFG--SEIIPASAN 175 (360)
Q Consensus 98 d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~--~~~l~~~i~ 175 (360)
|++|+|++|.|||..+..+. .+++ ...+.+.++|+|+|++++|..+++.. +...... .++++.+-+
T Consensus 147 d~~g~v~~~~e~~~~~~~~~----------~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 214 (245)
T PRK05450 147 DADGRALYFSRAPIPYGRDA----------FADS-APTPVYRHIGIYAYRRGFLRRFVSLP-PSPLEKIESLEQLRALEN 214 (245)
T ss_pred CCCCcEEEecCCCCCCCCCc----------cccc-cCccccEEEEEEecCHHHHHHHHhCC-CCccccchhHHHHHHHHC
Confidence 88899999999985332100 0000 00147899999999999998765432 2211111 112332234
Q ss_pred cCceEEEEeCC-ceeecCCHHHHHHHHHHh
Q 018109 176 EQFLKAYLFND-YWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 176 ~~~I~~~~~~g-~w~digtp~~~~~a~~~~ 204 (360)
+.++.++..++ +|.|+|||++|.+|++.+
T Consensus 215 g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 215 GYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 67899999986 999999999999998764
|
|
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-12 Score=120.17 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=35.8
Q ss_pred CCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEE-eeeEEecCeEECCCCEEeceEEECCc
Q 018109 210 MFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGAD 279 (360)
Q Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~ 279 (360)
+.+.+++++.+..++.++++++|.. ++.||+++.|. +++| .++.||++|.|.++++|.+.+.+|++
T Consensus 104 ~~A~i~~~A~i~~~~~ig~~~vI~~----~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~ 171 (338)
T COG1044 104 PTAVIDPTATIGKNVSIGPNVVIGA----GVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNN 171 (338)
T ss_pred ccccccCcCccCCCCccCCCeEECC----CCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCc
Confidence 3455566666666666666666632 44444444444 3444 24555555555555555555555543
|
|
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=130.13 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=107.3
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeee--cCHHHHHHHH---HHcCCcEEEEEeecCCCCCCcccEEEEC
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNH---RQSGADITISCLPMDDSRASDFGLMKIN 98 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~--~dl~~ll~~h---~~~~a~~tll~~~~~~~~~~~~g~v~~d 98 (360)
..+|||+|+..+..++.+.. ..++.++|++||+++. .+|.++++.+ .++++.+|+...+... .+.||++..+
T Consensus 82 ~~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p--~t~YGyI~~~ 158 (468)
T TIGR01479 82 VGRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHP--ETGYGYIRRG 158 (468)
T ss_pred cccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCC--CCCceEEEeC
Confidence 35899999999887773100 0134599999998654 3488888765 3456666766665543 5789999987
Q ss_pred C------CCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcc--------
Q 018109 99 N------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND-------- 164 (360)
Q Consensus 99 ~------~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~-------- 164 (360)
+ .++|.+|.|||+...++ .......+++|+|+|+|+++.|...++...|+...
T Consensus 159 ~~~~~~~~~~V~~f~EKP~~~~a~-------------~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~ 225 (468)
T TIGR01479 159 EPLAGEDVYQVQRFVEKPDLATAQ-------------AYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEA 225 (468)
T ss_pred CccCCCCceEEeEEEECCChHHHH-------------HHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHh
Confidence 3 25899999999865421 11111247999999999977666655554332111
Q ss_pred ---------hhhcccc---------cccc-cCceEEEEeCCceeecCCHHHHHHHH
Q 018109 165 ---------FGSEIIP---------ASAN-EQFLKAYLFNDYWEDIGTIRSFFEAN 201 (360)
Q Consensus 165 ---------~~~~~l~---------~~i~-~~~I~~~~~~g~w~digtp~~~~~a~ 201 (360)
+.++.++ .+++ ..++++.+.+..|.|+|+|+++.+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 226 SEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred ccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 1112223 1233 35688899999999999999998874
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=117.35 Aligned_cols=170 Identities=22% Similarity=0.313 Sum_probs=120.4
Q ss_pred CCcEEEeeCcccCCCCCC-------------ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHH
Q 018109 5 TGNSQVLAATQTPGEAGK-------------RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQN 69 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~~-------------~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~ 69 (360)
.|+.+++++.++..+... +...||+++++++..++++ ..++|++++||. +...++.++++.
T Consensus 39 ~~i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~ 114 (229)
T cd02540 39 LGPDRIVVVVGHGAEQVKKALANPNVEFVLQEEQLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEA 114 (229)
T ss_pred CCCCeEEEEECCCHHHHHHHhCCCCcEEEECCCCCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHH
Confidence 567777777766433211 2236999999999999862 137899999998 446678999999
Q ss_pred HHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH
Q 018109 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 149 (360)
Q Consensus 70 h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~ 149 (360)
|++.+++++++..+.++ +..||.+..+++++|..+.|||.....+ ....++++|+|+|+++
T Consensus 115 ~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~ 175 (229)
T cd02540 115 HREAGADVTVLTAELED--PTGYGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAE 175 (229)
T ss_pred HHhcCCcEEEEEEEcCC--CCCccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHH
Confidence 98888888887777665 6689988787778999999987532100 0135789999999998
Q ss_pred HHHHHHHhhCCC---Ccchhhcccccccc-cCceEEEEeCCc--eeecCCHHHH
Q 018109 150 ILLNLLRWRFPT---ANDFGSEIIPASAN-EQFLKAYLFNDY--WEDIGTIRSF 197 (360)
Q Consensus 150 vl~~ll~~~~~~---~~~~~~~~l~~~i~-~~~I~~~~~~g~--w~digtp~~~ 197 (360)
.|..+++..... ...+..+.++.+++ +.+|.+|..+|| |+.+|+|.++
T Consensus 176 ~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 176 FLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred HHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 776666653211 11223466666665 467999999764 6778888753
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-12 Score=101.69 Aligned_cols=102 Identities=29% Similarity=0.473 Sum_probs=84.5
Q ss_pred Ccee-cCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe
Q 018109 229 PSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 307 (360)
Q Consensus 229 ~~~~-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~ 307 (360)
|+++ +++.+.+++||++|.|.++.+.++++++++.|++++.|.+++++.+ +.|++++.+.
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~ 61 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIR 61 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEE
Confidence 3455 5677889999999999988899999999999999999999988765 9999999999
Q ss_pred eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcE
Q 018109 308 ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSV 353 (360)
Q Consensus 308 ~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~ 353 (360)
+|+||+++.|++++++.+...... .++.....+.++|++++.
T Consensus 62 ~siig~~~~Ig~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~ 103 (104)
T cd04651 62 RAIIDKNVVIPDGVVIGGDPEEDR----ARFYVTEDGIVVVGKGMV 103 (104)
T ss_pred eEEECCCCEECCCCEECCCccccc----ccceEcCCeEEEEecccC
Confidence 999999999999999988633221 144455677778877764
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-12 Score=114.71 Aligned_cols=145 Identities=22% Similarity=0.207 Sum_probs=94.0
Q ss_pred ccCCCCceeccCCCCCCcee-cCcee-eceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec----------------
Q 018109 213 FYDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD---------------- 272 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~-~~~~i-~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~---------------- 272 (360)
.+++.+.+.+++.|++.+++ .++.| .++.||++|.|. ++.|. +++||+++.|++++.|+.
T Consensus 9 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~ 88 (205)
T cd03352 9 SIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIP 88 (205)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcC
Confidence 34445555555555666655 33555 377888888887 66665 478888888888877742
Q ss_pred ---eEEECCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-
Q 018109 273 ---TMMLGADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT- 346 (360)
Q Consensus 273 ---~~~~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 346 (360)
.++++++-.... ..+.+.... .+.||+++.+. ++.|++++.||+++.+.+++.+.++..|+++++|+.+++
T Consensus 89 ~~~~v~Ig~~~~Ig~~~~i~~~~~~---~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v 165 (205)
T cd03352 89 QLGGVIIGDDVEIGANTTIDRGALG---DTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGI 165 (205)
T ss_pred CcceEEECCCEEECCCCEEeccccC---CeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEE
Confidence 244444311111 111111111 26777777776 578888888888888888888877888888888887774
Q ss_pred ----EEcCCcEeCCCccC
Q 018109 347 ----VILKNSVITDGFVI 360 (360)
Q Consensus 347 ----~ig~~~~i~~g~~i 360 (360)
+||+++.|++++++
T Consensus 166 ~~~~~ig~~~~i~~~s~v 183 (205)
T cd03352 166 AGHLTIGDGVVIGAGSGV 183 (205)
T ss_pred eCCcEECCCCEEcCCCEE
Confidence 56777777777753
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-12 Score=115.87 Aligned_cols=157 Identities=17% Similarity=0.243 Sum_probs=104.0
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHHc-CCcEEEEEeecCCCC-CCcccE--EEEC
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQS-GADITISCLPMDDSR-ASDFGL--MKIN 98 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~-~a~~tll~~~~~~~~-~~~~g~--v~~d 98 (360)
.+||++ +..+...+.. ..+.||+++||. +...++..+++.|++. ++++++++.+++++. ...++. +..+
T Consensus 73 ~~gt~~-~~~~~~~~~~----~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 147 (239)
T cd02517 73 PSGTDR-IAEVAEKLDA----DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLD 147 (239)
T ss_pred CchhHH-HHHHHHhcCC----CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEEC
Confidence 468886 5555555642 126799999997 4456689999999876 778888888876522 013343 5567
Q ss_pred CCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhh--cccccccc-
Q 018109 99 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS--EIIPASAN- 175 (360)
Q Consensus 99 ~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~--~~l~~~i~- 175 (360)
++++|+.|.++|.....+ +.. ....+.++|+|+|++++|..+.... .......+ +++ .+++
T Consensus 148 ~~~~v~~~~~~~~~~~~~------------~~~--~~~~~~~~Giy~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~ 211 (239)
T cd02517 148 KDGYALYFSRSPIPYPRD------------SSE--DFPYYKHIGIYAYRRDFLLRFAALP-PSPLEQIESLEQL-RALEN 211 (239)
T ss_pred CCCCEEEecCCCCCCCCC------------CCC--CCceeEEEEEEEECHHHHHHHHhCC-CchhhhhhhHHHH-HHHHC
Confidence 778999998765432100 000 0146899999999999998765431 11111111 122 3344
Q ss_pred cCceEEEEeCCceeecCCHHHHHHHHH
Q 018109 176 EQFLKAYLFNDYWEDIGTIRSFFEANL 202 (360)
Q Consensus 176 ~~~I~~~~~~g~w~digtp~~~~~a~~ 202 (360)
+.++.++..+++|.|+|||++|.++++
T Consensus 212 g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 212 GYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred CCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 566999999899999999999999874
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=106.21 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=66.1
Q ss_pred ceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEeceEE----------ECCcccchhHHHHhhhhCCCcceEECCC
Q 018109 239 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDTMM----------LGADFYETDAEVASLLAEGRVPVGIGEN 303 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ig~~ 303 (360)
++.||++|.|. ++.+. .++||++|.|++++.|.+++. +|++ +.+..+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~------------------~~i~~~ 78 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSN------------------NVFEVG 78 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCC------------------CEECCC
Confidence 56777777777 56563 468999999999999987643 5543 666667
Q ss_pred CeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCC
Q 018109 304 TKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDG 357 (360)
Q Consensus 304 ~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g 357 (360)
+.|.+++||++|.||+++++.....+++++.++.++.|..+. .|++++.++++
T Consensus 79 ~~i~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~-~i~~~~vi~g~ 131 (164)
T cd04646 79 CKCEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSE-ILPENTVIYGA 131 (164)
T ss_pred cEEEeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCc-EECCCeEEeCC
Confidence 777788888888888888887655444444444444444332 23444444443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=109.10 Aligned_cols=124 Identities=21% Similarity=0.298 Sum_probs=83.1
Q ss_pred CccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhh
Q 018109 212 SFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL 290 (360)
Q Consensus 212 ~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 290 (360)
..+.+...++.++.+.+.+++.+ ++.||++|.|+ ++.|.++.||+++.|++++.|.++++ +++
T Consensus 10 ~~~~~~v~ig~~~~I~~~a~i~~----~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i-g~~----------- 73 (193)
T cd03353 10 TYIDGDVEIGVDVVIDPGVILEG----KTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVI-GNG----------- 73 (193)
T ss_pred EEEcCCeEECCCcEECCCCEEeC----cCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEE-CCC-----------
Confidence 33444455555555555555533 78899999998 78888889999999999999987654 544
Q ss_pred hhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecC-----------CCcccccccCCceEEeCCe------------E
Q 018109 291 LAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANS-----------EGIQEADRSAEGFYIRSGV------------T 346 (360)
Q Consensus 291 ~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~------------~ 346 (360)
+.|++++.|. +++|+++++|++++.+.+. ..+ .++.+++++.|++++ +
T Consensus 74 -------~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~ 145 (193)
T cd03353 74 -------ATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYL-GDAEIGEGVNIGAGTITCNYDGVNKHRT 145 (193)
T ss_pred -------CEECCccEEcCccEECCCCEECCcEEEecceEcCCCEeccccee-cccEECCCCEEcCceEEeccCCccccCC
Confidence 7788888876 6777777777776665432 111 134555666655543 3
Q ss_pred EEcCCcEeCCCcc
Q 018109 347 VILKNSVITDGFV 359 (360)
Q Consensus 347 ~ig~~~~i~~g~~ 359 (360)
+||+++.||++++
T Consensus 146 vigd~~~ig~~~~ 158 (193)
T cd03353 146 VIGDNVFIGSNSQ 158 (193)
T ss_pred EECCCeEEccCCE
Confidence 5677777777654
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=114.15 Aligned_cols=118 Identities=14% Similarity=0.194 Sum_probs=83.4
Q ss_pred cCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-------------eeEEecCeEECCCCEEec-------eEEECCc
Q 018109 223 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKD-------TMMLGAD 279 (360)
Q Consensus 223 ~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-------------~~~ig~~~~i~~~~~i~~-------~~~~~~~ 279 (360)
.+.+++++.+ ..+.+. ++.||++|.|. ++++. +++||++|.|++++.|.. .+.+|++
T Consensus 28 ~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~ 107 (254)
T TIGR01852 28 GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNN 107 (254)
T ss_pred CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCC
Confidence 3333344444 334443 68888888888 77774 588999999999999984 3566665
Q ss_pred ccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 280 FYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 280 ~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
.+..+ +++ .. +|.||++|.|. ++.++++++||+++.++..+.+..+++|+++++|+.++++
T Consensus 108 ~~I~~~~~I----~~---~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 108 NLLMAYSHI----AH---DCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAV 170 (254)
T ss_pred CEECCCCEE----cc---CCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeE
Confidence 33332 111 11 17777777776 6888888888888999888888888899999999888754
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-11 Score=111.99 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=57.1
Q ss_pred ceEECCCCEEc-ceEEe-------------eeEEecCeEECCCCEEeceEEECCccc-chh-HHHHhh--hhCCCcceEE
Q 018109 239 DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKDTMMLGADFY-ETD-AEVASL--LAEGRVPVGI 300 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-------------~~~ig~~~~i~~~~~i~~~~~~~~~~~-~~~-~~~~~~--~~~~~~~~~i 300 (360)
++.||++|.|. ++.|. +++||++|.|++++.|...+..+...+ +.+ +.+..+ +.. .|.|
T Consensus 47 ~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~---~~~I 123 (254)
T cd03351 47 PTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAH---DCVI 123 (254)
T ss_pred CeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECC---CCEE
Confidence 56666666666 55553 466777777777777766655442111 111 111100 001 1444
Q ss_pred CCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 301 GENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 301 g~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
|++|.|. ++.+++++.||++|.++..+.+..++.|++++.|+.++++
T Consensus 124 G~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 124 GNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGV 171 (254)
T ss_pred CCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEE
Confidence 4444443 4555556666666666666666666667777776666543
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=111.84 Aligned_cols=117 Identities=15% Similarity=0.265 Sum_probs=89.7
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHH--HHHcCCcEEEEEeecCCCC-------CCcccEE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPMDDSR-------ASDFGLM 95 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~--h~~~~a~~tll~~~~~~~~-------~~~~g~v 95 (360)
..|||++++++.++++ ++|+|++||+++++|+.++++. +..+++++++++...+.+. ...++++
T Consensus 88 ~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (216)
T cd02507 88 SAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVI 160 (216)
T ss_pred CCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCCCcEE
Confidence 4699999999998884 6899999999999999999965 4455566666555443221 4568888
Q ss_pred EECCC---CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHH
Q 018109 96 KINNE---GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 151 (360)
Q Consensus 96 ~~d~~---g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl 151 (360)
.+|++ .+++.+.++++.. +.+.+...+++.+|+.. ..+++.++|+|+|++++|
T Consensus 161 ~~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~l~~~~~~~-i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 161 AVDSKTQRLLLLHYEEDLDED--LELIIRKSLLSKHPNVT-IRTDLLDCHIYICSPDVL 216 (216)
T ss_pred EEcCCCCceEEEechhhcCcC--cccccCHHHHhcCCCEE-EEcCcccccEEEecCcCC
Confidence 88876 4777777777653 34457888888887764 468999999999999864
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=111.41 Aligned_cols=105 Identities=18% Similarity=0.308 Sum_probs=72.0
Q ss_pred CceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEe----------ceEEECCcccc
Q 018109 218 KPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLK----------DTMMLGADFYE 282 (360)
Q Consensus 218 ~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~----------~~~~~~~~~~~ 282 (360)
..+++++.+.+.+.+.+ ++.||++|.|. +++|. +.+||++|.|+++|.|. ..+++|++
T Consensus 53 p~I~~~~~I~p~A~V~G----~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~--- 125 (269)
T PLN02296 53 PVVDKDAFVAPSASVIG----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDN--- 125 (269)
T ss_pred CccCCCCEECCCcEEEc----ceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCC---
Confidence 33444455555544432 56777777777 66665 35899999999999996 23566765
Q ss_pred hhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCC
Q 018109 283 TDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 344 (360)
Q Consensus 283 ~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (360)
+.||++|.|.+|+||++|.||.++++.++..++.++.|+.++.+.++
T Consensus 126 ---------------v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~ 172 (269)
T PLN02296 126 ---------------VTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQN 172 (269)
T ss_pred ---------------CEECCCceecCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecC
Confidence 88999998888999999999999988876554444444444444333
|
|
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.3e-11 Score=101.47 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=65.8
Q ss_pred ceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEec----eEEECCcccchhHHHHhhhhCCCcceEECCCCeEeee
Q 018109 239 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD----TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 309 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~ 309 (360)
++.||++|.|+ ++.|. .+.||++|.|+++|.|+. .++++++ +.|++++.+.++
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~Ig~~~~i~~~ 79 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN------------------GHIGHGAILHGC 79 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC------------------CEECCCcEEECC
Confidence 56777777776 66665 378999999999999942 2445554 889999988899
Q ss_pred EecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCc
Q 018109 310 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 358 (360)
Q Consensus 310 ~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 358 (360)
+||++|.||.++.+.+.. .++++++|+.++ ++.++..|++++
T Consensus 80 ~Ig~~~~Ig~~~~I~~g~------~Ig~~~~Ig~~s-~v~~~~~i~~~~ 121 (155)
T cd04745 80 TIGRNALVGMNAVVMDGA------VIGEESIVGAMA-FVKAGTVIPPRS 121 (155)
T ss_pred EECCCCEECCCCEEeCCC------EECCCCEECCCC-EeCCCCEeCCCC
Confidence 999999999998887754 444445554443 223444444443
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-11 Score=110.86 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=16.9
Q ss_pred eEecCCCEECCCcEEecCCCcccccccCCceEEeCCe
Q 018109 309 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV 345 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (360)
++|+++|.||+++.|.++..++++++|+.+++|++++
T Consensus 174 ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~ 210 (269)
T TIGR00965 174 TIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQST 210 (269)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCC
Confidence 4444444444444444444444444444444444443
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-11 Score=105.45 Aligned_cols=100 Identities=16% Similarity=0.314 Sum_probs=70.0
Q ss_pred eeccCCCCCCceecCceeeceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEec----eEEECCcccchhHHHHhh
Q 018109 220 IYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD----TMMLGADFYETDAEVASL 290 (360)
Q Consensus 220 v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~~ 290 (360)
+++++.|.+.+.+.+ ++.||++|.|+ +++|. ..+||++|.|+++|.|+. .++++++
T Consensus 11 i~~~~~I~~~a~I~G----~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~----------- 75 (192)
T TIGR02287 11 VHPEAYVHPTAVLIG----DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN----------- 75 (192)
T ss_pred CCCCcEECCCCEEEe----eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC-----------
Confidence 344444444444422 67788888888 77765 478999999999999952 2455554
Q ss_pred hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEE
Q 018109 291 LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYI 341 (360)
Q Consensus 291 ~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i 341 (360)
+.|++++.|.+|+|+++|.||.++.+.+...+++++.+++++.+
T Consensus 76 -------~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V 119 (192)
T TIGR02287 76 -------GHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFV 119 (192)
T ss_pred -------CEECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCCEE
Confidence 89999999999999999999999988775444444444444333
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.3e-11 Score=118.92 Aligned_cols=103 Identities=19% Similarity=0.300 Sum_probs=64.5
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCC
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNA 315 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~ 315 (360)
++.|+++|.|. ++.|. ++.||++|.|++++.|.+ +++|++ |.||+++.|. +|.||++|
T Consensus 268 ~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~-~~Ig~~------------------~~Ig~~~~i~~~~~ig~~~ 328 (446)
T PRK14353 268 DTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEG-AHVGEG------------------AEVGPYARLRPGAELGEGA 328 (446)
T ss_pred ceEECCCCEECCCCEECCCCEECCCCEECCCeEEec-cEECCC------------------cEECCCeEEeccceecCCe
Confidence 45566666666 44443 566777777777777755 455554 7777777776 67777777
Q ss_pred EECCCcEEecCC-----Cc-----ccccccCCceEEeCCe------------EEEcCCcEeCCCccC
Q 018109 316 RIGKNVIIANSE-----GI-----QEADRSAEGFYIRSGV------------TVILKNSVITDGFVI 360 (360)
Q Consensus 316 ~ig~~~~~~~~~-----~~-----~~~~~~~~~~~i~~~~------------~~ig~~~~i~~g~~i 360 (360)
.||+++.+.+.. .+ -++..|++++.|+.++ ++||+++.||++++|
T Consensus 329 ~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i 395 (446)
T PRK14353 329 KVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSAL 395 (446)
T ss_pred EEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEE
Confidence 777777664311 10 1123566666666653 357888888887754
|
|
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=106.79 Aligned_cols=154 Identities=15% Similarity=0.262 Sum_probs=101.2
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHHcCC-cEEEEEeecCCC----CCCcccEEEE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGA-DITISCLPMDDS----RASDFGLMKI 97 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~~a-~~tll~~~~~~~----~~~~~g~v~~ 97 (360)
..||++ +..+...++ .+.|++++||. +...++.++++.|++.+. .+++++.+.+.. ++..+++ ..
T Consensus 74 ~~g~~~-~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~ 145 (238)
T PRK13368 74 LSGTDR-LAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV-VV 145 (238)
T ss_pred CCccHH-HHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE-EE
Confidence 357874 666766663 37899999996 567779999999977653 556666655431 1334444 44
Q ss_pred CCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCC-cchhh-ccccccc-
Q 018109 98 NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-NDFGS-EIIPASA- 174 (360)
Q Consensus 98 d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~-~~~~~-~~l~~~i- 174 (360)
+++|+++.+.|+|.....+ .. ....+.++|+|+|++++|..+ +...... ..+.. +++ .++
T Consensus 146 ~~~g~v~~~~~~~~~~~~~--------------~~-~~~~~~n~giy~~~~~~l~~~-~~~~~~~~~~~~~~~~~-~~~~ 208 (238)
T PRK13368 146 DKNGDALYFSRSPIPSRRD--------------GE-SARYLKHVGIYAFRRDVLQQF-SQLPETPLEQIESLEQL-RALE 208 (238)
T ss_pred CCCCCEEEeeCCCCCCCCC--------------CC-CCceeEEEEEEEeCHHHHHHH-HcCCCChhhhhhhHHHH-HHHH
Confidence 5678999998765221100 00 013588999999999999864 3321111 01111 344 444
Q ss_pred ccCceEEEEeCCceeecCCHHHHHHHHHH
Q 018109 175 NEQFLKAYLFNDYWEDIGTIRSFFEANLA 203 (360)
Q Consensus 175 ~~~~I~~~~~~g~w~digtp~~~~~a~~~ 203 (360)
.+.++.+|..+++|+|||+|++|.+++..
T Consensus 209 ~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 209 HGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 46679999989999999999999998763
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.3e-11 Score=101.90 Aligned_cols=103 Identities=16% Similarity=0.249 Sum_probs=78.8
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCE
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 316 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ 316 (360)
++.|++++.|. ++.+. .++||++|.|++++.|+..++++++ +.|++++.|.+|+|++++.
T Consensus 17 ~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~siig~~~~ 78 (163)
T cd05636 17 PVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDG------------------CVVGNSVEVKNSIIMDGTK 78 (163)
T ss_pred CeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCC------------------CEECCCcEEeeeEecCCCE
Confidence 45666666666 55554 6899999999999999987777776 9999999999999999999
Q ss_pred ECCCcEEecCCCcccccccCCceEEeC-----------------------CeEEEcCCcEeCCCccC
Q 018109 317 IGKNVIIANSEGIQEADRSAEGFYIRS-----------------------GVTVILKNSVITDGFVI 360 (360)
Q Consensus 317 ig~~~~~~~~~~~~~~~~~~~~~~i~~-----------------------~~~~ig~~~~i~~g~~i 360 (360)
|+.++.+.+ ..++.++.+++++.+.. .-++||+++.||++++|
T Consensus 79 I~~~~~i~~-siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i 144 (163)
T cd05636 79 VPHLNYVGD-SVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSL 144 (163)
T ss_pred eccCCEEec-CEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEE
Confidence 999888865 45666667777766532 01467788888777653
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7e-11 Score=109.86 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=20.2
Q ss_pred EECCCcEEecCCCcccccccCCceEEeCCe-----EEEcCCcEeCCCcc
Q 018109 316 RIGKNVIIANSEGIQEADRSAEGFYIRSGV-----TVILKNSVITDGFV 359 (360)
Q Consensus 316 ~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~ig~~~~i~~g~~ 359 (360)
.||+++.+..++.+..++.+++++.++.++ ++||+++.||++++
T Consensus 107 ~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~ 155 (262)
T PRK05289 107 RIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTA 155 (262)
T ss_pred EECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecce
Confidence 344444444433333334444444444333 34566666655554
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=5e-11 Score=119.15 Aligned_cols=118 Identities=18% Similarity=0.234 Sum_probs=75.3
Q ss_pred cCCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceE
Q 018109 223 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 299 (360)
Q Consensus 223 ~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (360)
.+.+++++.+ .++.|. ++.||++|.|+ ++.|.+++||++|.|++++.|.++++ +++ +.
T Consensus 261 ~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~i-g~~------------------~~ 321 (451)
T TIGR01173 261 TVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEI-GEG------------------CD 321 (451)
T ss_pred ccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccc-cCC------------------cE
Confidence 3444555555 345554 57788888888 77777888888888888888877544 433 77
Q ss_pred ECCCCeEe-eeEecCCCEECCCcEEecC-----------CCcccccccCCceEEeCCe------------EEEcCCcEeC
Q 018109 300 IGENTKIK-ECIIDKNARIGKNVIIANS-----------EGIQEADRSAEGFYIRSGV------------TVILKNSVIT 355 (360)
Q Consensus 300 ig~~~~i~-~~~i~~~~~ig~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~------------~~ig~~~~i~ 355 (360)
||+++.|. +++|+++|+||.++.+.+. ..+ +++.|++++.|++++ ++||+++.||
T Consensus 322 Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig 400 (451)
T TIGR01173 322 VGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYL-GDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIG 400 (451)
T ss_pred ECCeeEECCCCEECCCcEEccceeecCcEECCCcEecceeeE-eeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEEC
Confidence 77777776 5666666666666544321 111 134566666666553 4577777777
Q ss_pred CCccC
Q 018109 356 DGFVI 360 (360)
Q Consensus 356 ~g~~i 360 (360)
++++|
T Consensus 401 ~~~~i 405 (451)
T TIGR01173 401 SNTQL 405 (451)
T ss_pred CCCEE
Confidence 77653
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.7e-11 Score=119.06 Aligned_cols=119 Identities=20% Similarity=0.314 Sum_probs=83.1
Q ss_pred ccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcce
Q 018109 222 TSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 298 (360)
Q Consensus 222 ~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (360)
+.+.+++++.+ ..+.+. ++.||++|.|+ ++.|.+++||++|.|++++.|.++++..+ +
T Consensus 268 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~-------------------~ 328 (456)
T PRK14356 268 PRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG-------------------C 328 (456)
T ss_pred CCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc-------------------c
Confidence 34455555555 233343 68899999998 88889999999999999999976655443 8
Q ss_pred EECCCCeEe-eeEecCCCEECCCcEEecCC-----Cc-----ccccccCCceEEeCCe------------EEEcCCcEeC
Q 018109 299 GIGENTKIK-ECIIDKNARIGKNVIIANSE-----GI-----QEADRSAEGFYIRSGV------------TVILKNSVIT 355 (360)
Q Consensus 299 ~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~-----~~-----~~~~~~~~~~~i~~~~------------~~ig~~~~i~ 355 (360)
.||+++.|. +++||++|+||.++.+.++. .+ -+++.+++++.|++++ ++||+++.+|
T Consensus 329 ~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig 408 (456)
T PRK14356 329 SVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIG 408 (456)
T ss_pred EECCceEECCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEc
Confidence 899988887 78888888888887665421 11 1134566666666663 3567777777
Q ss_pred CCcc
Q 018109 356 DGFV 359 (360)
Q Consensus 356 ~g~~ 359 (360)
++++
T Consensus 409 ~~~~ 412 (456)
T PRK14356 409 SNTA 412 (456)
T ss_pred CCCE
Confidence 6664
|
|
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-11 Score=109.22 Aligned_cols=117 Identities=22% Similarity=0.352 Sum_probs=92.4
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCC-----------CCccc
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR-----------ASDFG 93 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~-----------~~~~g 93 (360)
.+|||++|+++.+.+. ++|+|++||.+++.++.++++.|+++++.+|+++.+.+.+. ...+.
T Consensus 86 ~~gt~~al~~~~~~i~-------~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (214)
T cd04198 86 DMGTADSLRHIRKKIK-------KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADERD 158 (214)
T ss_pred CcChHHHHHHHHhhcC-------CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCCCCCc
Confidence 4799999999998874 68999999999999999999999999999999988764211 23467
Q ss_pred EEEECC-CCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHH
Q 018109 94 LMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 151 (360)
Q Consensus 94 ~v~~d~-~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl 151 (360)
++.+|+ +++++.+....+.. ..+.++..+++.+|+.. ..+++.++|+|+|++++|
T Consensus 159 ~~~~d~~~~~ll~~~~~~~~~--~~~~~~~~~l~~~~~~~-i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 159 VIGLDEKTQRLLFITSEEDLD--EDLELRKSLLKRHPRVT-ITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred eEEEcCCCCEEEEECCHHHhh--hhhhHHHHHHHhCCCEE-EEcCcccceEEEEEeeeC
Confidence 777774 46888776543322 34566888888887664 478999999999999864
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=97.13 Aligned_cols=97 Identities=25% Similarity=0.405 Sum_probs=69.8
Q ss_pred ceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEece----EEECCcccchhHHHHhhhhCCCcceEECCCCeEeee
Q 018109 239 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 309 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~ 309 (360)
++.||++|.|. ++.|. .++||+++.|++++.|..+ ++++++ +.|+.+|.+.++
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 78 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN------------------VTVGHGAVLHGC 78 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC------------------cEECCCcEEeee
Confidence 56777777777 66664 3589999999999999875 566765 899999999999
Q ss_pred EecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 310 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 310 ~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
+|++++.|++++.+.....++++++++.++.+.++. .+++++.+
T Consensus 79 ~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~-~i~~~~~~ 122 (153)
T cd04645 79 TIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGK-VIPPGSLV 122 (153)
T ss_pred EECCCCEECCCCEEcCCCEECCCCEECCCCEECCCC-EeCCCCEE
Confidence 999999999999887655555555555554444442 23344433
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=106.14 Aligned_cols=99 Identities=15% Similarity=0.272 Sum_probs=71.7
Q ss_pred ceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEec----------eEEECCcccch
Q 018109 219 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD----------TMMLGADFYET 283 (360)
Q Consensus 219 ~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~----------~~~~~~~~~~~ 283 (360)
.+..++.+.+++.+.+ ++.||++|.|. +++|. ..+||+++.|+++|.|+. .+++|++
T Consensus 61 ~i~~~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~---- 132 (246)
T PLN02472 61 KVAVDAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRY---- 132 (246)
T ss_pred ccCCCCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCC----
Confidence 3455555555555533 67788888888 66664 378999999999999962 4666765
Q ss_pred hHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCce
Q 018109 284 DAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGF 339 (360)
Q Consensus 284 ~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~ 339 (360)
+.||++|.|.+|+|+++|.||.++++.+...++.++.+++++
T Consensus 133 --------------v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gs 174 (246)
T PLN02472 133 --------------VTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGS 174 (246)
T ss_pred --------------CEECCCcEECCeEEcCCCEECCCCEECCCCEECCCCEECCCC
Confidence 899999999999999999999999988765444444444433
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=99.71 Aligned_cols=115 Identities=20% Similarity=0.290 Sum_probs=67.2
Q ss_pred eeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-----eeEEecCeEECCCCEEe----ceEEECCcccchhHHHHh
Q 018109 220 IYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLK----DTMMLGADFYETDAEVAS 289 (360)
Q Consensus 220 v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-----~~~ig~~~~i~~~~~i~----~~~~~~~~~~~~~~~~~~ 289 (360)
+++++.|.+.+.+.+ ++.||++|.|+ ++.|. ++.||++|.|++++.|. ..+.+|++
T Consensus 5 ig~~~~I~~~a~i~~----~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~---------- 70 (167)
T cd00710 5 IDPSAYVHPTAVVIG----DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKN---------- 70 (167)
T ss_pred eCCCeEECCCCEEEe----eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCC----------
Confidence 344444444444422 45566666666 44443 36788888888887774 34556664
Q ss_pred hhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCcc
Q 018109 290 LLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 359 (360)
Q Consensus 290 ~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~ 359 (360)
+.|+.++.|. +++||++|.||.++.+.+ ..+++++.++.++.|. + ..|++++.|+++++
T Consensus 71 --------~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~ 130 (167)
T cd00710 71 --------VSIAHGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVD-G-VEIPPGRYVPAGAV 130 (167)
T ss_pred --------ceECCCCEEeCCEEECCCCEECCCCEEEC-CEECCCCEEcCCCEEe-C-CEeCCCCEECCCCE
Confidence 7777777776 477777777777777753 3334444444444432 2 24456666666654
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=98.10 Aligned_cols=86 Identities=20% Similarity=0.275 Sum_probs=64.7
Q ss_pred ceEECCCCEEc-ceEEee----eEEecCeEECCCCEEece----EEECCcccchhHHHHhhhhCCCcceEECCCCeEeee
Q 018109 239 DSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 309 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~~----~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~ 309 (360)
++.||++|.|. ++.|.. .+||++|.|+++|.|... ++++++ +.|++++.+.++
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 79 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY------------------VTIGHNAVVHGA 79 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC------------------CEECCCcEEECc
Confidence 56777888877 666654 589999999999999863 667765 899999999999
Q ss_pred EecCCCEECCCcEEecCCCcccccccCCceEEe
Q 018109 310 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIR 342 (360)
Q Consensus 310 ~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~ 342 (360)
+||++|.|++++.+.....++.+.+++.++.+.
T Consensus 80 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~ 112 (154)
T cd04650 80 KVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVT 112 (154)
T ss_pred EECCCCEEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 999999999999987754444444444443333
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.9e-11 Score=108.92 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=15.4
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCCCccccccc
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRS 335 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~ 335 (360)
+.||++|.|+ +|.|..++.||++++++..+.+.....|
T Consensus 177 viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I 215 (272)
T PRK11830 177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKI 215 (272)
T ss_pred eEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEE
Confidence 4444444443 3444444444444444443333333333
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=104.34 Aligned_cols=27 Identities=22% Similarity=0.081 Sum_probs=14.9
Q ss_pred eEECCCCeEeeeEecCCCEECCCcEEe
Q 018109 298 VGIGENTKIKECIIDKNARIGKNVIIA 324 (360)
Q Consensus 298 ~~ig~~~~i~~~~i~~~~~ig~~~~~~ 324 (360)
+.|+++|.+.+++||++|.|++++.+.
T Consensus 43 s~I~~~~~i~~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 43 SYVMRDCDIIYTTIGKFCSIAAMVRIN 69 (204)
T ss_pred CEECCCcEEeeeEECCCCEECCCCEEC
Confidence 555555555555555555555555554
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=87.65 Aligned_cols=65 Identities=22% Similarity=0.495 Sum_probs=40.5
Q ss_pred ECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCC
Q 018109 242 ISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 320 (360)
Q Consensus 242 i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~ 320 (360)
|++++.|. ++.+.++.||+++.|++++.|+++++..+ +.|+++|.|.++++++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 44555554 44455566666777777776666555443 66777777766777777776666
Q ss_pred cEEec
Q 018109 321 VIIAN 325 (360)
Q Consensus 321 ~~~~~ 325 (360)
+.+.+
T Consensus 63 ~~v~~ 67 (81)
T cd04652 63 CKLKD 67 (81)
T ss_pred CEEcc
Confidence 66643
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=107.14 Aligned_cols=116 Identities=16% Similarity=0.268 Sum_probs=61.9
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEec---
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIID--- 312 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~--- 312 (360)
.+.|++++.|+ ++.|. +++|..++.|++++.|.+.+.+|..-+.- ...+....+.||++|.|. ++.|.
T Consensus 23 ~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~------~~~g~~~~v~IG~~~~I~e~vtI~~gt 96 (255)
T PRK12461 23 FAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDF------TYKGEESRLEIGDRNVIREGVTIHRGT 96 (255)
T ss_pred CCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccc------cccCccceeEECCceEECCccEEecCc
Confidence 34455555554 44443 45555555555555555555555310000 000011126667666664 34443
Q ss_pred ---CCCEECCCcEEecCCCcccccccCCceEEeCCe-----EEEcCCcEeCCCccC
Q 018109 313 ---KNARIGKNVIIANSEGIQEADRSAEGFYIRSGV-----TVILKNSVITDGFVI 360 (360)
Q Consensus 313 ---~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~ig~~~~i~~g~~i 360 (360)
..+.||+++.+.++..+..++.|+++++|+.++ ++||+++.||++++|
T Consensus 97 ~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V 152 (255)
T PRK12461 97 KGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLV 152 (255)
T ss_pred ccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEE
Confidence 345666666666666666666777777776554 467777777777653
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-10 Score=116.68 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=80.6
Q ss_pred eccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcc
Q 018109 221 YTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVP 297 (360)
Q Consensus 221 ~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
.+.+.|+.+|.| +++.|. ++.||++|.|+ ++.|.+++||++|.|++++.|.++ ++|++
T Consensus 268 ~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~-~ig~~------------------ 328 (481)
T PRK14358 268 EDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGA-EVGAG------------------ 328 (481)
T ss_pred cCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCC-eEeCc------------------
Confidence 344455555666 445554 57789999998 788888999999999999999765 55654
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCC-----Ccc-----cccccCCceEEeCCe------------EEEcCCcEe
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSE-----GIQ-----EADRSAEGFYIRSGV------------TVILKNSVI 354 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~-----~~~-----~~~~~~~~~~i~~~~------------~~ig~~~~i 354 (360)
+.|++++.+. +++||++++|+.++.+.+.. .++ +++.|++++.|++++ ++||+++.|
T Consensus 329 ~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~i 408 (481)
T PRK14358 329 SDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFI 408 (481)
T ss_pred eEECCccEEcCCcEECCCCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEE
Confidence 8888888886 68888888888866654321 111 123455555555443 256677777
Q ss_pred CCCcc
Q 018109 355 TDGFV 359 (360)
Q Consensus 355 ~~g~~ 359 (360)
|++++
T Consensus 409 g~~~~ 413 (481)
T PRK14358 409 GSNTT 413 (481)
T ss_pred cCCCE
Confidence 76664
|
|
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-10 Score=96.10 Aligned_cols=33 Identities=9% Similarity=0.277 Sum_probs=14.5
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEe
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK 271 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~ 271 (360)
++.|+++|.|. ++.|. +++||++|.|++++.|+
T Consensus 31 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 31 GAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred CCEECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 34455555555 33331 34444444444444443
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-10 Score=110.10 Aligned_cols=122 Identities=23% Similarity=0.190 Sum_probs=85.2
Q ss_pred ceeecCCHHHHHHHHHHhhcCC-CCCCccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEE-eeeEEecC
Q 018109 187 YWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIR 261 (360)
Q Consensus 187 ~w~digtp~~~~~a~~~~l~~~-~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~ 261 (360)
.+.-+.+|...+..-..++.+. .....+++++.+++++.+++++.+ +.+.|. ++.||++|.|. ++.| .+++||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 4666788876554444444322 223456667777777666666666 445553 67888888888 6777 37889999
Q ss_pred eEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe---------------------eeEecCCCEECCC
Q 018109 262 SRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK---------------------ECIIDKNARIGKN 320 (360)
Q Consensus 262 ~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~---------------------~~~i~~~~~ig~~ 320 (360)
|.|++++.|...+++|++ |.|+++|.|+ +++||+++.||++
T Consensus 146 ~~I~~~~~I~~~~~IG~~------------------~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~ 207 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKN------------------VIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGAN 207 (324)
T ss_pred ceECCCcEECCCCEECCC------------------CEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCC
Confidence 999999999877788876 7777777773 4788888888888
Q ss_pred cEEecC
Q 018109 321 VIIANS 326 (360)
Q Consensus 321 ~~~~~~ 326 (360)
+++...
T Consensus 208 ~~I~r~ 213 (324)
T TIGR01853 208 TTIDRG 213 (324)
T ss_pred CEEecC
Confidence 887543
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=111.40 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=78.4
Q ss_pred eeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCc
Q 018109 220 IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRV 296 (360)
Q Consensus 220 v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (360)
+..++.|++.+.| .++.++ ++.||++|+|+ ++.|++|.||+++.|.++++|+++.+-.+
T Consensus 265 i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~------------------ 326 (460)
T COG1207 265 IRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG------------------ 326 (460)
T ss_pred EcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC------------------
Confidence 3444555666666 445554 66777777777 66677777777777777777777655433
Q ss_pred ceEECCCCeEe-eeEecCCCEECCCcEEecCCCcc----------cccccCCceEEeCCeE------------EEcCCcE
Q 018109 297 PVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQ----------EADRSAEGFYIRSGVT------------VILKNSV 353 (360)
Q Consensus 297 ~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~----------~~~~~~~~~~i~~~~~------------~ig~~~~ 353 (360)
+.||+.++|+ ++.++.+++||..|.+.++..-. ++..||+++.||+|++ +||+++.
T Consensus 327 -~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vF 405 (460)
T COG1207 327 -ATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVF 405 (460)
T ss_pred -cccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcE
Confidence 7888888887 78888888888888888753211 1225555666666552 6666666
Q ss_pred eCCCcc
Q 018109 354 ITDGFV 359 (360)
Q Consensus 354 i~~g~~ 359 (360)
||.+|.
T Consensus 406 iGSns~ 411 (460)
T COG1207 406 IGSNSQ 411 (460)
T ss_pred EccCCc
Confidence 666553
|
|
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.8e-10 Score=99.54 Aligned_cols=86 Identities=20% Similarity=0.387 Sum_probs=62.3
Q ss_pred ceEECCCCEEc-ceEEee----eEEecCeEECCCCEEece----EEECCcccchhHHHHhhhhCCCcceEECCCCeEeee
Q 018109 239 DSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 309 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~~----~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~ 309 (360)
++.||++|.|+ +++|.. .+||++|.|+++|.|+.. ++++++ +.||+++.+.+|
T Consensus 28 ~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~------------------~~Ig~~a~i~g~ 89 (196)
T PRK13627 28 DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN------------------GHIGHGAILHGC 89 (196)
T ss_pred ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC------------------CEECCCcEEeeE
Confidence 56777777777 666643 578888888888888653 345554 889999999999
Q ss_pred EecCCCEECCCcEEecCCCcccccccCCceEEe
Q 018109 310 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIR 342 (360)
Q Consensus 310 ~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~ 342 (360)
+||++|.||.++++.+...++.++.++.++.+.
T Consensus 90 vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~ 122 (196)
T PRK13627 90 VIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122 (196)
T ss_pred EECCCCEECcCCccCCCcEECCCCEEcCCCEEe
Confidence 999999999999887765544444444444433
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-10 Score=96.50 Aligned_cols=87 Identities=23% Similarity=0.392 Sum_probs=70.9
Q ss_pred ceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEec----eEEECCcccchhHHHHhhhhCCCcceEECCCCeEeee
Q 018109 239 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD----TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 309 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~ 309 (360)
++.|++++.|+ +++++ ...||+++.|.+++.|+- .+.+|++ +.||+++.|..|
T Consensus 29 dV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~------------------vtIGH~aivHGc 90 (176)
T COG0663 29 DVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDD------------------VTIGHGAVVHGC 90 (176)
T ss_pred eEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCC------------------cEEcCccEEEEe
Confidence 78888888888 66664 577999999999999984 6888886 999999999999
Q ss_pred EecCCCEECCCcEEecCCCcccccccCCceEEeC
Q 018109 310 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRS 343 (360)
Q Consensus 310 ~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~ 343 (360)
.|+++|.||.|+++-|++.+++.+.|+.|+.+.+
T Consensus 91 ~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~ 124 (176)
T COG0663 91 TIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTP 124 (176)
T ss_pred EECCCcEEecCceEeCCcEECCCcEEccCCcccC
Confidence 9999999999999999765555555555544443
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-10 Score=85.53 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=67.1
Q ss_pred CCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCC
Q 018109 226 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 303 (360)
Q Consensus 226 ~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ 303 (360)
|++++.+ +++.+.++.|+++|.|+ ++.|.+++|++++.|++++.|.++++..+ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCC
Confidence 4455566 45667789999999999 78899999999999999999999877765 999999
Q ss_pred CeEeeeEecCCCEECCCc
Q 018109 304 TKIKECIIDKNARIGKNV 321 (360)
Q Consensus 304 ~~i~~~~i~~~~~ig~~~ 321 (360)
+.+.+|+|+++++|++++
T Consensus 63 ~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 63 CKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred CEEccCEECCCcEeCCCC
Confidence 999999999999999875
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=96.13 Aligned_cols=26 Identities=23% Similarity=0.613 Sum_probs=12.2
Q ss_pred eEECCCCeE-----eeeEecCCCEECCCcEE
Q 018109 298 VGIGENTKI-----KECIIDKNARIGKNVII 323 (360)
Q Consensus 298 ~~ig~~~~i-----~~~~i~~~~~ig~~~~~ 323 (360)
+.|+++|.| .+|+|+++++|+.++++
T Consensus 46 ~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i 76 (155)
T cd04745 46 ANVQDNCVIHGFPGQDTVLEENGHIGHGAIL 76 (155)
T ss_pred CEECCCCEEeecCCCCeEEcCCCEECCCcEE
Confidence 445555444 23444444444444443
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=115.99 Aligned_cols=117 Identities=11% Similarity=0.135 Sum_probs=66.4
Q ss_pred CCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEE
Q 018109 224 RRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGI 300 (360)
Q Consensus 224 ~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 300 (360)
+.|++++.+ .++.|. ++.||++|.|+ ++.|.+++||++|.|++ +.+.++++..+ +.|
T Consensus 272 v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~-------------------~~I 331 (482)
T PRK14352 272 VTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAG-------------------ATV 331 (482)
T ss_pred EEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCC-------------------CEE
Confidence 344444444 344443 56777777777 66666677777777653 44444444332 666
Q ss_pred CCCCeEe-eeEecCCCEECCCcEE-----ecCCCcc-----cccccCCceEEeCCe------------EEEcCCcEeCCC
Q 018109 301 GENTKIK-ECIIDKNARIGKNVII-----ANSEGIQ-----EADRSAEGFYIRSGV------------TVILKNSVITDG 357 (360)
Q Consensus 301 g~~~~i~-~~~i~~~~~ig~~~~~-----~~~~~~~-----~~~~~~~~~~i~~~~------------~~ig~~~~i~~g 357 (360)
|++|.+. +++||++++||.++.+ .....++ +++.|++++.||.++ ++||+++.||.+
T Consensus 332 g~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~ 411 (482)
T PRK14352 332 GPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSD 411 (482)
T ss_pred CCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCC
Confidence 6666665 6666666666644332 2111111 133566666666654 467788887777
Q ss_pred ccC
Q 018109 358 FVI 360 (360)
Q Consensus 358 ~~i 360 (360)
++|
T Consensus 412 ~~i 414 (482)
T PRK14352 412 TMF 414 (482)
T ss_pred CEE
Confidence 653
|
|
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-10 Score=104.28 Aligned_cols=85 Identities=20% Similarity=0.275 Sum_probs=45.8
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEEC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 318 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig 318 (360)
+.||++|.|.. .++||.++.||++|+|..++.+++.. + + -...++.||++|.|+ +|.|.+++.||
T Consensus 130 a~IGeGt~I~~----~a~IG~~v~IG~nv~I~~g~~IgG~~-e-p--------~~~~~ViIgDnv~IGa~a~I~~GV~IG 195 (269)
T TIGR00965 130 AYVDEGTMVDT----WATVGSCAQIGKNVHLSGGVGIGGVL-E-P--------LQANPTIIEDNCFIGARSEIVEGVIVE 195 (269)
T ss_pred cEECCCCEECC----CcEECCCCEECCCCEEcCCcccCCCc-c-c--------CCCCCeEECCCCEECCCCEEcCCCEEC
Confidence 44555555552 34555555555555555554444210 0 0 000126777777775 66666666666
Q ss_pred CCcEEecCCCcccccccCCc
Q 018109 319 KNVIIANSEGIQEADRSAEG 338 (360)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~ 338 (360)
.+++|+.++.+..+.+|.|.
T Consensus 196 ~gavIGaGavI~~~~~I~~~ 215 (269)
T TIGR00965 196 EGSVISMGVFIGQSTKIYDR 215 (269)
T ss_pred CCCEEeCCCEECCCCEEecc
Confidence 66666666666655555554
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-10 Score=113.43 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=66.7
Q ss_pred cCCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceE
Q 018109 223 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 299 (360)
Q Consensus 223 ~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (360)
.+.|++.+.+ +.+.|. ++.||++|.|+ ++.|.+|+||++|.|.. +.+.++++..+ +.
T Consensus 255 ~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~-~~v~~sii~~~-------------------~~ 314 (448)
T PRK14357 255 DVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIR-SECEKSVIEDD-------------------VS 314 (448)
T ss_pred ceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEee-eEEEEEEEeCC-------------------cE
Confidence 3334444444 233333 46666666666 55555566666666642 34444444433 77
Q ss_pred ECCCCeEe-eeEecCCCEECCCcEEec-----CCCcc-----cccccCCceEEeCCe------------EEEcCCcEeCC
Q 018109 300 IGENTKIK-ECIIDKNARIGKNVIIAN-----SEGIQ-----EADRSAEGFYIRSGV------------TVILKNSVITD 356 (360)
Q Consensus 300 ig~~~~i~-~~~i~~~~~ig~~~~~~~-----~~~~~-----~~~~~~~~~~i~~~~------------~~ig~~~~i~~ 356 (360)
|++++.|. +++||++|+||+++.+.+ ...+. +++.|++++.|+.++ ++||+++.||+
T Consensus 315 ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~ 394 (448)
T PRK14357 315 VGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGS 394 (448)
T ss_pred ECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECC
Confidence 77777775 577888887777765543 11111 133666777776543 46677777777
Q ss_pred CccC
Q 018109 357 GFVI 360 (360)
Q Consensus 357 g~~i 360 (360)
+++|
T Consensus 395 ~~~i 398 (448)
T PRK14357 395 NSSL 398 (448)
T ss_pred CCEE
Confidence 7643
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.7e-10 Score=99.38 Aligned_cols=51 Identities=27% Similarity=0.211 Sum_probs=25.6
Q ss_pred eEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 309 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
+.|++++.|+.++.+.....++.+..++.++.+..+ +.||+++.|+++++|
T Consensus 115 ~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~-~~Ig~~~~ig~~~~v 165 (205)
T cd03352 115 TVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-TTIGDNVIIGGQVGI 165 (205)
T ss_pred eEECCCCEECCceEEeCCCEECCCCEECCCCEEccc-cEECCCeEEcCCCEE
Confidence 344444444444444444444444444433333333 356777777777654
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-10 Score=85.18 Aligned_cols=65 Identities=35% Similarity=0.589 Sum_probs=50.3
Q ss_pred ECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCC
Q 018109 242 ISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 320 (360)
Q Consensus 242 i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~ 320 (360)
|+++|.|. ++.+.+++||++|.|++++.|+++++..+ +.|++++.|.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 45666665 55566678888888888888888776654 88888888888888888888888
Q ss_pred cEEec
Q 018109 321 VIIAN 325 (360)
Q Consensus 321 ~~~~~ 325 (360)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd03356 63 VRVVN 67 (79)
T ss_pred CEEcC
Confidence 87765
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=96.27 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=26.8
Q ss_pred eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEec
Q 018109 255 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~ 325 (360)
+++||++|.|++++.|.+.+.+|++ +.|+.++.+. ++.|+++|.||+++.+..
T Consensus 117 ~~~ig~~~~i~~~~~i~~~~~ig~~------------------~~i~~~~~i~~~~~ig~~~~ig~~~~v~~ 170 (201)
T TIGR03570 117 DVRIGDNVIINTGAIVEHDCVIGDY------------------VHIAPGVTLSGGVVIGEGVFIGAGATIIQ 170 (201)
T ss_pred CCEECCCcEECCCCEEcCCCEECCC------------------CEECCCCEEeCCcEECCCCEECCCCEEeC
Confidence 3455555555555555544444443 5555555554 455555555555554443
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-10 Score=113.22 Aligned_cols=116 Identities=16% Similarity=0.250 Sum_probs=77.6
Q ss_pred CCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEEC
Q 018109 225 RNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 301 (360)
Q Consensus 225 ~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 301 (360)
.+++++.| .++.|. ++.||++|.|+ ++.|.+++||++|.|++++.|++++ +|++ +.|+
T Consensus 267 ~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~-ig~~------------------~~Ig 327 (456)
T PRK09451 267 THGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDAN-LGAA------------------CTIG 327 (456)
T ss_pred EECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCc-cCCC------------------cEec
Confidence 34556666 455555 68899999998 7888889999999999999988654 4544 6666
Q ss_pred CCCeEe-eeEecCCCEECCCcEEecC-----------CCcccccccCCceEEeCCe------------EEEcCCcEeCCC
Q 018109 302 ENTKIK-ECIIDKNARIGKNVIIANS-----------EGIQEADRSAEGFYIRSGV------------TVILKNSVITDG 357 (360)
Q Consensus 302 ~~~~i~-~~~i~~~~~ig~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~------------~~ig~~~~i~~g 357 (360)
+++.|. ++.++.++.||+++.+.++ ..+ +++.||+++.|++++ ++||+++.||++
T Consensus 328 ~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~ 406 (456)
T PRK09451 328 PFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYL-GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSD 406 (456)
T ss_pred CceEEeCCCEECCCceeccceeeeceeeCCCCccCccccc-cccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCC
Confidence 666665 5666666665555544321 111 234666667776665 357888888887
Q ss_pred ccC
Q 018109 358 FVI 360 (360)
Q Consensus 358 ~~i 360 (360)
++|
T Consensus 407 ~~i 409 (456)
T PRK09451 407 TQL 409 (456)
T ss_pred CEE
Confidence 753
|
|
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.2e-10 Score=106.69 Aligned_cols=90 Identities=17% Similarity=0.153 Sum_probs=57.6
Q ss_pred ecCCHHH-HHHHHHHhhcCC--CCCCccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecCe
Q 018109 190 DIGTIRS-FFEANLALTAHP--PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRS 262 (360)
Q Consensus 190 digtp~~-~~~a~~~~l~~~--~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~ 262 (360)
-+++|.. +.++...+..+. .....+++++.+.+++.+++++.+ .++.|. ++.||++|.|. ++.|. ++.||++|
T Consensus 76 ~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~ 155 (343)
T PRK00892 76 VVKNPYLAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADC 155 (343)
T ss_pred EeCCHHHHHHHHHHHhccccccccCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCC
Confidence 3445654 333444443222 123556777777777777777777 445554 57777777777 66664 67788888
Q ss_pred EECCCCEEeceEEECCc
Q 018109 263 RINANVHLKDTMMLGAD 279 (360)
Q Consensus 263 ~i~~~~~i~~~~~~~~~ 279 (360)
.|+++++|.+++.+|++
T Consensus 156 ~I~~~~~I~~~~~Ig~~ 172 (343)
T PRK00892 156 RLHANVTIYHAVRIGNR 172 (343)
T ss_pred EeCCCeEEcCCCEECCC
Confidence 88888888877777765
|
|
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7e-10 Score=98.51 Aligned_cols=97 Identities=16% Similarity=0.291 Sum_probs=66.0
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEece---EEECCcccchhHHHHhhhhCCCcceEECCCCeEe-----eeEe
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----ECII 311 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-----~~~i 311 (360)
+.|++++.|.+ +++||++|.|+++|.|+.+ ++++.+ +.|+++|.|. +|+|
T Consensus 17 a~I~~~a~I~g----~V~IG~~~~I~~~avIrgd~~~i~Ig~~------------------~~Ig~~~~I~~~~~~~siI 74 (196)
T PRK13627 17 AFVHPSAVLIG----DVIVGAGVYIGPLASLRGDYGRLIVQAG------------------ANLQDGCIMHGYCDTDTIV 74 (196)
T ss_pred eEECCCCEEEC----ceEECCCCEECCCCEEecCCccEEECCC------------------CEECCCCEEeCCCCCCCEE
Confidence 34444544443 5778888888888888763 567765 8888888884 4678
Q ss_pred cCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 312 DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 312 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
++++.||.++++.++ .+++++.||.++.|..++ +||+++.|++|++|
T Consensus 75 g~~~~Ig~~a~i~g~-vIG~~v~IG~ga~V~~g~-~IG~~s~Vgags~V 121 (196)
T PRK13627 75 GENGHIGHGAILHGC-VIGRDALVGMNSVIMDGA-VIGEESIVAAMSFV 121 (196)
T ss_pred CCCCEECCCcEEeeE-EECCCCEECcCCccCCCc-EECCCCEEcCCCEE
Confidence 888888888776543 355555555555555554 56888888888764
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-10 Score=102.87 Aligned_cols=103 Identities=21% Similarity=0.247 Sum_probs=64.2
Q ss_pred ccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHH
Q 018109 213 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVA 288 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 288 (360)
.+++.+.+...+.+++++.+ .++.+. ++.||++|.|+ ++.|. +++||++|.|++++.|.+.. +..
T Consensus 88 ~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~--~~~--------- 156 (231)
T TIGR03532 88 RIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVI--EPP--------- 156 (231)
T ss_pred EECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEcccc--ccc---------
Confidence 34555555555556666666 344443 67777787777 66664 66677777777777665421 110
Q ss_pred hhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCccc
Q 018109 289 SLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQE 331 (360)
Q Consensus 289 ~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~ 331 (360)
. ..++.||++|.|+ ++.|.+++.||+++.++..+.+.+
T Consensus 157 --~---~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~ 195 (231)
T TIGR03532 157 --S---AKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTE 195 (231)
T ss_pred --c---CCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 0 0127888888887 788888888888888876654443
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.6e-10 Score=97.97 Aligned_cols=84 Identities=17% Similarity=0.329 Sum_probs=43.9
Q ss_pred eeEEecCeEECCCCEEec---eEEECCcccchhHHHHhhhhCCCcceEECCCCeE-----eeeEecCCCEECCCcEEecC
Q 018109 255 HSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI-----KECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-----~~~~i~~~~~ig~~~~~~~~ 326 (360)
++.||++|.|+++|.|.. .+++|++ |.|+++|.| .+|+|+++++|+.++.+.+
T Consensus 26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~------------------t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~- 86 (192)
T TIGR02287 26 DVILGKRCYVGPLASLRGDFGRIVLKEG------------------ANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG- 86 (192)
T ss_pred eEEECCCCEECCCcEEEccCCceEECCC------------------CEECCCeEEeccCCCCCeECCCCEECCCCEEcC-
Confidence 456666666666666653 3555553 666666666 2466666666666555543
Q ss_pred CCcccccccCCceEEeCCeEEEcCCcEeCCCc
Q 018109 327 EGIQEADRSAEGFYIRSGVTVILKNSVITDGF 358 (360)
Q Consensus 327 ~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 358 (360)
+.+++++.|+.++.+..++ +||+++.|++|+
T Consensus 87 siIg~~~~IG~ga~I~~g~-~IG~~s~Vgags 117 (192)
T TIGR02287 87 CIVGRNALVGMNAVVMDGA-VIGENSIVAASA 117 (192)
T ss_pred CEECCCCEECCCcccCCCe-EECCCCEEcCCC
Confidence 2333333344333333332 345555555544
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=94.62 Aligned_cols=97 Identities=14% Similarity=0.190 Sum_probs=66.3
Q ss_pred CCccCCCCceeccCCCCCCcee-cCceee----ceEECCCCEEc-ceEEee-----------eEEecCeEECCCCEEece
Q 018109 211 FSFYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIEH-----------SVVGIRSRINANVHLKDT 273 (360)
Q Consensus 211 ~~~~~~~~~v~~~~~~~~~~~~-~~~~i~----~~~i~~~~~i~-~~~i~~-----------~~ig~~~~i~~~~~i~~~ 273 (360)
..++++.+.+...+.+++++.+ .++.+. .+.||++|.|+ ++.|.+ +.||+++.|.+++.+.+
T Consensus 5 ~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~- 83 (164)
T cd04646 5 GAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA- 83 (164)
T ss_pred CcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe-
Confidence 3456666767677777777777 556663 46899999998 777754 34777777777777766
Q ss_pred EEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecC
Q 018109 274 MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~ 326 (360)
+++|++ +.||.+|.|. +++||++|.||+++++...
T Consensus 84 ~~IGd~------------------~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~ 119 (164)
T cd04646 84 LKIGNN------------------NVFESKSFVGKNVIITDGCIIGAGCKLPSS 119 (164)
T ss_pred eEECCC------------------CEEeCCCEECCCCEECCCCEEeCCeEECCC
Confidence 455554 7777777774 5777777777777766543
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.5e-10 Score=102.42 Aligned_cols=86 Identities=22% Similarity=0.377 Sum_probs=56.8
Q ss_pred eeEEecCeEECCCCEEece---EEECCcccchhHHHHhhhhCCCcceEECCCCeEe-----------eeEecCCCEECCC
Q 018109 255 HSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----------ECIIDKNARIGKN 320 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-----------~~~i~~~~~ig~~ 320 (360)
++.||++|.|.++|.|... +.+|++ |.|+++|.|. +|+||++|.||.+
T Consensus 70 ~V~IG~~~~I~~gavI~g~~~~I~IG~~------------------~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~ 131 (269)
T PLN02296 70 DVQVGRGSSIWYGCVLRGDVNSISVGSG------------------TNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHS 131 (269)
T ss_pred ceEECCCCEECCCCEEEcCCCceEECCC------------------CEECCCCEEEeCCCcccCCCCCcEeCCCCEECCC
Confidence 5677888888888877753 477765 7777777774 4677777777777
Q ss_pred cEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 321 VIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
+++.+ ..+++++.|+.++.|..++ +|++++.|++|++|
T Consensus 132 avI~g-~~Igd~v~IG~ga~I~~gv-~Ig~~a~IgagSvV 169 (269)
T PLN02296 132 AVLHG-CTVEDEAFVGMGATLLDGV-VVEKHAMVAAGALV 169 (269)
T ss_pred ceecC-CEECCCcEECCCcEECCCe-EECCCCEECCCCEE
Confidence 76643 3445555555555555553 44666666666653
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.9e-10 Score=111.27 Aligned_cols=115 Identities=22% Similarity=0.257 Sum_probs=63.3
Q ss_pred CCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEEC
Q 018109 225 RNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 301 (360)
Q Consensus 225 ~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 301 (360)
.|++.+.+ ..+.+. ++.||++|.|+ ++.|.+++||++|.|++ +.+.++++ |++ +.||
T Consensus 267 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~-~~i~~~~i-g~~------------------~~Ig 326 (458)
T PRK14354 267 EIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITN-SVIEESKV-GDN------------------VTVG 326 (458)
T ss_pred EECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEE-EEEeCCEE-CCC------------------cEEC
Confidence 34444444 233332 46666666666 56666666666666663 33444333 332 6677
Q ss_pred CCCeEe-eeEecCCCEECCCcEEecCCC----------cccccccCCceEEeCCe------------EEEcCCcEeCCCc
Q 018109 302 ENTKIK-ECIIDKNARIGKNVIIANSEG----------IQEADRSAEGFYIRSGV------------TVILKNSVITDGF 358 (360)
Q Consensus 302 ~~~~i~-~~~i~~~~~ig~~~~~~~~~~----------~~~~~~~~~~~~i~~~~------------~~ig~~~~i~~g~ 358 (360)
++|.|. +++||++|+|+.++.+.+... .-++.+|++++.|++++ ++||+++.||+++
T Consensus 327 ~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s 406 (458)
T PRK14354 327 PFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNS 406 (458)
T ss_pred CceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCC
Confidence 766666 567777777666665543110 01223556666665543 3567777777776
Q ss_pred c
Q 018109 359 V 359 (360)
Q Consensus 359 ~ 359 (360)
+
T Consensus 407 ~ 407 (458)
T PRK14354 407 N 407 (458)
T ss_pred E
Confidence 5
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=92.93 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=79.7
Q ss_pred CccCCCCceeccCCCCCCcee-cCceee-----ceEECCCCEEc-ceEEe-----eeEEecCeEECCCCEEeceEEECCc
Q 018109 212 SFYDATKPIYTSRRNLPPSKI-DDSKIV-----DSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKDTMMLGAD 279 (360)
Q Consensus 212 ~~~~~~~~v~~~~~~~~~~~~-~~~~i~-----~~~i~~~~~i~-~~~i~-----~~~ig~~~~i~~~~~i~~~~~~~~~ 279 (360)
.++++++.+...+.+++.++| .++.|. ++.||++|.|. ++.+. ++.||+++.|++++.|...+.+|++
T Consensus 9 ~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~ 88 (167)
T cd00710 9 AYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN 88 (167)
T ss_pred eEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC
Confidence 456677777777777777777 556664 36899999999 77773 5789999999999999998899986
Q ss_pred ccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEec
Q 018109 280 FYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~ 325 (360)
+.||.+|.|.++.||++|.||.++.+.+
T Consensus 89 ------------------~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~ 116 (167)
T cd00710 89 ------------------CFIGFRSVVFNAKVGDNCVIGHNAVVDG 116 (167)
T ss_pred ------------------CEECCCCEEECCEECCCCEEcCCCEEeC
Confidence 9999999999999999999999998853
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-09 Score=82.57 Aligned_cols=65 Identities=29% Similarity=0.469 Sum_probs=47.7
Q ss_pred ECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCC
Q 018109 242 ISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 320 (360)
Q Consensus 242 i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~ 320 (360)
||++|.|+ ++.+.++.||+++.|++++.|.++++..+ +.|++++.|.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence 45555555 45555678888888888888887766554 78888888888888888888887
Q ss_pred cEEec
Q 018109 321 VIIAN 325 (360)
Q Consensus 321 ~~~~~ 325 (360)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd05787 63 CTIPP 67 (79)
T ss_pred CEECC
Confidence 77755
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-09 Score=91.75 Aligned_cols=87 Identities=20% Similarity=0.314 Sum_probs=57.7
Q ss_pred eEECCCCEEc-ceEEe----eeEEecCeEECCCCEEece------------EEECCcccchhHHHHhhhhCCCcceEECC
Q 018109 240 SIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT------------MMLGADFYETDAEVASLLAEGRVPVGIGE 302 (360)
Q Consensus 240 ~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ig~ 302 (360)
..|++++.|. ++.+. .+.||++|.|++++.|..+ +.++++ +.|++
T Consensus 22 I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~------------------~~Ig~ 83 (161)
T cd03359 22 IVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDY------------------VFIGE 83 (161)
T ss_pred EEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCc------------------cEECC
Confidence 3445555554 44333 3688999999999988864 345554 88888
Q ss_pred CCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCC
Q 018109 303 NTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 344 (360)
Q Consensus 303 ~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (360)
++.+.++.|++++.||+++.+.....++..+.+++++.+.++
T Consensus 84 ~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~ 125 (161)
T cd03359 84 NCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPD 125 (161)
T ss_pred CCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCC
Confidence 888888889999999998888775444444444444333333
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-09 Score=93.25 Aligned_cols=53 Identities=21% Similarity=0.264 Sum_probs=26.6
Q ss_pred eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEec
Q 018109 255 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~ 325 (360)
++.||++|.|++++.|++.+.+|++ +.|+.++.+. ++.||++|.||.++.+..
T Consensus 114 ~~~ig~~~~i~~~~~i~~~~~ig~~------------------~~i~~~~~i~~~~~ig~~~~ig~~~~v~~ 167 (197)
T cd03360 114 DARIGDNVIINTGAVIGHDCVIGDF------------------VHIAPGVVLSGGVTIGEGAFIGAGATIIQ 167 (197)
T ss_pred CCEECCCeEECCCCEECCCCEECCC------------------CEECCCCEEcCCcEECCCCEECCCCEEcC
Confidence 3455555555555555444444443 5555555553 355555555555554443
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-09 Score=108.71 Aligned_cols=75 Identities=16% Similarity=0.313 Sum_probs=52.7
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCE
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 316 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ 316 (360)
++.|+++|.|+ ++.|. +++||++|.|++++.|.++ ++|++ +.|++++.|.+++|+++|.
T Consensus 268 ~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~-~Ig~~------------------~~I~~~~~i~~~~i~~~~~ 328 (459)
T PRK14355 268 GVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGC-RIGDD------------------VTVKAGSVLEDSVVGDDVA 328 (459)
T ss_pred CeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCC-EEcCC------------------CEECCCeEEeCCEECCCCE
Confidence 55666777776 55554 6889999999999999875 44554 7888888777777777777
Q ss_pred ECCCcEEecCCCcccc
Q 018109 317 IGKNVIIANSEGIQEA 332 (360)
Q Consensus 317 ig~~~~~~~~~~~~~~ 332 (360)
||+++.+.....++++
T Consensus 329 ig~~~~i~~~~~i~~~ 344 (459)
T PRK14355 329 IGPMAHLRPGTELSAH 344 (459)
T ss_pred ECCCCEECCCCEeCCC
Confidence 7766666544433333
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-09 Score=90.47 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=47.1
Q ss_pred eeEEecCeEECCCCEEece---EEECCcccchhHHHHhhhhCCCcceEECCCCeEee-----eEecCCCEECCCcEEecC
Q 018109 255 HSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-----CIIDKNARIGKNVIIANS 326 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~-----~~i~~~~~ig~~~~~~~~ 326 (360)
+++||++|.|++++.|..+ +.+|++ +.|+++|.|.. ++||+++.|+.++.+.+
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~------------------~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~- 78 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKY------------------SNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG- 78 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCC------------------CEECCCCEEEeCCCCCeEECCCCEECCCcEEEC-
Confidence 4566666666666666654 556654 66666666653 56666666666666643
Q ss_pred CCcccccccCCceEEeCCeEEEcCCcEeCCCc
Q 018109 327 EGIQEADRSAEGFYIRSGVTVILKNSVITDGF 358 (360)
Q Consensus 327 ~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 358 (360)
..++++++++.++.+..++ +||+++.|++++
T Consensus 79 ~~Ig~~~~Ig~~~~i~~~~-~Ig~~~~vg~~~ 109 (154)
T cd04650 79 AKVGNYVIVGMGAILLNGA-KIGDHVIIGAGA 109 (154)
T ss_pred cEECCCCEEcCCCEEeCCC-EECCCCEECCCC
Confidence 2344444444444443332 345555555544
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-09 Score=99.35 Aligned_cols=100 Identities=15% Similarity=0.268 Sum_probs=58.3
Q ss_pred CCCCCCceecCceeeceEECCCCEEcceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECC
Q 018109 224 RRNLPPSKIDDSKIVDSIISHGSFITSSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGE 302 (360)
Q Consensus 224 ~~~~~~~~~~~~~i~~~~i~~~~~i~~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~ 302 (360)
+++.|++++.. ++.|++++.|.++.+. ++.||+++.|++++.|++++++|++ +.|+.
T Consensus 104 ~rI~p~a~V~~----ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~n------------------v~I~~ 161 (272)
T PRK11830 104 VRVVPGAVVRR----GAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLSG 161 (272)
T ss_pred cEEcCCeEECC----CCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCC------------------cEECC
Confidence 34444444432 4455555555543332 4556666666666666665556554 66666
Q ss_pred CCeEe---------eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCe
Q 018109 303 NTKIK---------ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV 345 (360)
Q Consensus 303 ~~~i~---------~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (360)
++.|. +++|+++|.||.++.+.....++++++|+.++.|.+++
T Consensus 162 gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt 213 (272)
T PRK11830 162 GVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQST 213 (272)
T ss_pred CccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCe
Confidence 66553 37777777777777776666666666666666665554
|
|
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.4e-09 Score=89.04 Aligned_cols=88 Identities=16% Similarity=0.287 Sum_probs=45.1
Q ss_pred eEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe---------e
Q 018109 240 SIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK---------E 308 (360)
Q Consensus 240 ~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~---------~ 308 (360)
+.|++++.|. .+.+. ++.||+++.|++++.|++.+.+|++ +.|+.++.|. +
T Consensus 14 ~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~------------------~~I~~~~~igg~~~~~~~~~ 75 (139)
T cd03350 14 AFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKN------------------VHLSAGAVIGGVLEPLQATP 75 (139)
T ss_pred CEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCC------------------CEECCCCEECCcccccccCC
Confidence 3344444444 33332 3455555555555555555555554 5555555553 2
Q ss_pred eEecCCCEECCCcEEecCCCcccccccCCceEEeCCe
Q 018109 309 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV 345 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (360)
++|+++|.|++++++.....+++...++.++.|.+++
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~ 112 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQST 112 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCe
Confidence 5566666666666665555444444555555555443
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-09 Score=79.83 Aligned_cols=75 Identities=24% Similarity=0.329 Sum_probs=63.4
Q ss_pred CCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCC
Q 018109 226 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 303 (360)
Q Consensus 226 ~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ 303 (360)
+++.+.+ +++.+.++.|+++|.|+ ++.+.+++|++++.|++++.|.++++..+ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCC
Confidence 4455666 45677788999999998 88899999999999999999999876554 999999
Q ss_pred CeEee-eEecCCCEECC
Q 018109 304 TKIKE-CIIDKNARIGK 319 (360)
Q Consensus 304 ~~i~~-~~i~~~~~ig~ 319 (360)
+.+.+ ++++++++|++
T Consensus 63 ~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNLCIIGDDVVVED 79 (79)
T ss_pred CEEcCCeEECCCeEECc
Confidence 99986 99998888874
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-09 Score=107.85 Aligned_cols=101 Identities=30% Similarity=0.385 Sum_probs=64.7
Q ss_pred ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCE
Q 018109 239 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNAR 316 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ 316 (360)
++.||++|.|+ ++.|.++.||++|.|+ .+.+.++++ +++ +.|+++|.|. +++||++|.
T Consensus 280 ~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~i-g~~------------------~~I~~~~~I~~~~~Ig~~~~ 339 (450)
T PRK14360 280 NTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQI-GDG------------------VKIGPYAHLRPEAQIGSNCR 339 (450)
T ss_pred CcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccc-cCC------------------cEECCCCEECCCCEEeCceE
Confidence 56666666666 5666666666666664 344444433 332 8888888887 688888888
Q ss_pred ECCCcEEecCCCcc-----------cccccCCceEEeCCe------------EEEcCCcEeCCCccC
Q 018109 317 IGKNVIIANSEGIQ-----------EADRSAEGFYIRSGV------------TVILKNSVITDGFVI 360 (360)
Q Consensus 317 ig~~~~~~~~~~~~-----------~~~~~~~~~~i~~~~------------~~ig~~~~i~~g~~i 360 (360)
||+++.+.+. .+. +++.|++++.||.++ ++||+++.||++++|
T Consensus 340 Ig~~~~i~~~-~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i 405 (450)
T PRK14360 340 IGNFVEIKKS-QLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVL 405 (450)
T ss_pred ECCCEEEecc-ccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEE
Confidence 8888887543 111 123566666666553 356777777777653
|
|
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=97.72 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=68.2
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEec---eEEECCcccchhHHHHhhhhCCCcceEECCCCeEe--------
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------- 307 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-------- 307 (360)
++.|.+++.+.+ ++.||+++.|.+++.|.. .+.+|++ +.|+++|.|.
T Consensus 65 ~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~------------------t~Ig~~~vI~~~~~~~~~ 122 (246)
T PLN02472 65 DAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFC------------------SNVQERCVLHAAWNSPTG 122 (246)
T ss_pred CCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCC------------------CEECCCCEEeecCccccC
Confidence 344455544443 678999999999998875 3778875 8888888884
Q ss_pred ---eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCcc
Q 018109 308 ---ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 359 (360)
Q Consensus 308 ---~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~ 359 (360)
+++||++|+||.++.+.+ ..++.++.||+++.|..++ +||+++.|++|++
T Consensus 123 i~~~tvIG~~v~IG~~s~L~~-~~Igd~v~IG~~svI~~ga-vIg~~~~Ig~gsv 175 (246)
T PLN02472 123 LPAETLIDRYVTIGAYSLLRS-CTIEPECIIGQHSILMEGS-LVETHSILEAGSV 175 (246)
T ss_pred CCCCcEECCCCEECCCcEECC-eEEcCCCEECCCCEECCCC-EECCCCEECCCCE
Confidence 588888888888888853 4555566666666665554 4567777776664
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-09 Score=87.29 Aligned_cols=82 Identities=22% Similarity=0.179 Sum_probs=50.4
Q ss_pred ceEECCCCEEc-ceEE-eeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCE
Q 018109 239 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 316 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ 316 (360)
++.||++|.|+ ++.+ .+++||++|.|++++.+.+..+.+ ..+..++.+.+++||++|.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------------------~~~~~~~~~~~~~Ig~~~~ 75 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR--------------------SKIYRKWELKGTTVKRGAS 75 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCc--------------------cccccccccCCcEECCCcE
Confidence 56778888887 6666 367777777777777776654433 2344455666677777777
Q ss_pred ECCCcEEecCCCcccccccCCceE
Q 018109 317 IGKNVIIANSEGIQEADRSAEGFY 340 (360)
Q Consensus 317 ig~~~~~~~~~~~~~~~~~~~~~~ 340 (360)
||+++.+.+...++++..++.++.
T Consensus 76 Ig~~~~v~~~~~ig~~~~i~~~~~ 99 (119)
T cd03358 76 IGANATILPGVTIGEYALVGAGAV 99 (119)
T ss_pred ECcCCEEeCCcEECCCCEEccCCE
Confidence 777666655444444433333333
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-09 Score=88.81 Aligned_cols=10 Identities=10% Similarity=0.438 Sum_probs=4.7
Q ss_pred eEECCCCEEc
Q 018109 240 SIISHGSFIT 249 (360)
Q Consensus 240 ~~i~~~~~i~ 249 (360)
+.||+|+.|.
T Consensus 14 a~IG~GtvI~ 23 (147)
T cd04649 14 AYLAEGTTVM 23 (147)
T ss_pred CEECCCcEEC
Confidence 3444444444
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-09 Score=90.19 Aligned_cols=96 Identities=20% Similarity=0.310 Sum_probs=54.2
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEece---EEECCcccchhHHHHhhhhCCCcceEECCCCeEee-----eEe
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-----CII 311 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~-----~~i 311 (360)
++|+++|.|.+ ++.||+++.|++++.|..+ +++|++ +.|+++|.|.. ++|
T Consensus 6 ~~i~~~a~i~g----~v~ig~~~~I~~~~~I~~~~~~~~IG~~------------------~~I~~~~~I~~~~~~~~~I 63 (153)
T cd04645 6 AFIAPNATVIG----DVTLGEGSSVWFGAVLRGDVNPIRIGER------------------TNIQDGSVLHVDPGYPTII 63 (153)
T ss_pred eEECCCCEEEE----eEEECCCcEEcCCeEEECCCCceEECCC------------------CEECCCcEEecCCCCCeEE
Confidence 34444444442 4667777777777766643 456654 67777777754 477
Q ss_pred cCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCcc
Q 018109 312 DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 359 (360)
Q Consensus 312 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~ 359 (360)
|+++.|+.++++.+ ..+..++.++.++.+..++ +|++++.|+++++
T Consensus 64 g~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~v~~~~-~ig~~~~ig~~~~ 109 (153)
T cd04645 64 GDNVTVGHGAVLHG-CTIGDNCLIGMGAIILDGA-VIGKGSIVAAGSL 109 (153)
T ss_pred cCCcEECCCcEEee-eEECCCCEECCCCEEcCCC-EECCCCEECCCCE
Confidence 77777777776654 2334444444444444343 3455555555543
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.3e-09 Score=97.20 Aligned_cols=159 Identities=21% Similarity=0.316 Sum_probs=107.3
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC--HHHHHHH---HHHcCCcEEEEEeecCCCCCCcccEEEECC-
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQN---HRQSGADITISCLPMDDSRASDFGLMKINN- 99 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d--l~~ll~~---h~~~~a~~tll~~~~~~~~~~~~g~v~~d~- 99 (360)
+.||.|+..+.-.+.+. ..+.-++|+++|+++.-. |.+.++. ..+++..+|+...|... .+.||++...+
T Consensus 87 RnTApAIA~aa~~~~~~--~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~P--eTGYGYIe~G~~ 162 (333)
T COG0836 87 RNTAPAIALAALSATAE--GGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRP--ETGYGYIETGES 162 (333)
T ss_pred CCcHHHHHHHHHHHHHh--CCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCC--ccCcceeecCcc
Confidence 58999999998777641 113459999999976543 6655554 44566667776665543 47899988642
Q ss_pred ----C-CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhh-------
Q 018109 100 ----E-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS------- 167 (360)
Q Consensus 100 ----~-g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~------- 167 (360)
+ -+|.+|+|||+...++ +......++||+|+|+|+.+.+...++...|....-.+
T Consensus 163 ~~~~~~~~V~~FvEKPd~etA~-------------~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~ 229 (333)
T COG0836 163 IAENGVYKVDRFVEKPDLETAK-------------KYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAV 229 (333)
T ss_pred cccCCceEeeeeeeCCCHHHHH-------------HHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhccc
Confidence 2 2799999999987642 22233458999999999999776666665443110000
Q ss_pred ---------c---ccc-----ccc-c-cCceEEEEeCCceeecCCHHHHHHHH
Q 018109 168 ---------E---IIP-----ASA-N-EQFLKAYLFNDYWEDIGTIRSFFEAN 201 (360)
Q Consensus 168 ---------~---~l~-----~~i-~-~~~I~~~~~~g~w~digtp~~~~~a~ 201 (360)
+ .+| .++ + ..+++..+.+-.|.|+|+|.++++..
T Consensus 230 d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~ 282 (333)
T COG0836 230 DENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVL 282 (333)
T ss_pred ccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHh
Confidence 0 011 122 2 37788899998999999999998774
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-09 Score=107.11 Aligned_cols=40 Identities=23% Similarity=0.147 Sum_probs=19.4
Q ss_pred CCCCceecCceeeceEECCCCEEc-ceEEeeeEEecCeEEC
Q 018109 226 NLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRIN 265 (360)
Q Consensus 226 ~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~ 265 (360)
|+++|.+.++.+.++.||++|.|. ++.|.++.||+++.|+
T Consensus 285 i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~ 325 (430)
T PRK14359 285 IKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETK 325 (430)
T ss_pred ECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEc
Confidence 344444433444455555555555 4444555555555333
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-09 Score=108.56 Aligned_cols=99 Identities=26% Similarity=0.404 Sum_probs=77.7
Q ss_pred ECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECC
Q 018109 242 ISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 319 (360)
Q Consensus 242 i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~ 319 (360)
-++.+.+. .+.+. +++||.++.||.++.|.||++ |.+ |.||+||.|.++.||+||+||.
T Consensus 318 k~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVI-G~~------------------c~IgsN~~I~~S~iw~~v~Igd 378 (673)
T KOG1461|consen 318 KSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVI-GAN------------------CRIGSNVRIKNSFIWNNVTIGD 378 (673)
T ss_pred cCccceehhhccccceEEecccccccCCCeeeccee-cCC------------------CEecCceEEeeeeeecCcEECC
Confidence 35555555 33332 788999999999999999966 554 9999999999999999999999
Q ss_pred CcEEe-----cCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 320 NVIIA-----NSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 320 ~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
||+|. +.+.++.++.+.+|+.++.++ ++|++-.+..+++|
T Consensus 379 nc~I~~aii~d~v~i~~~~~l~~g~vl~~~V-Vv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 379 NCRIDHAIICDDVKIGEGAILKPGSVLGFGV-VVGRNFVLPKNSKV 423 (673)
T ss_pred CceEeeeEeecCcEeCCCcccCCCcEEeeee-EeCCCccccccccc
Confidence 97766 456778888888888888885 55888888777653
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-09 Score=98.15 Aligned_cols=104 Identities=19% Similarity=0.331 Sum_probs=82.3
Q ss_pred ccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceE
Q 018109 222 TSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 299 (360)
Q Consensus 222 ~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (360)
+.++|.|++.+.. .++|++|+.++ ++.|. ++.+++++.|.-++.++.++.+|.+ +.
T Consensus 107 ~g~RI~p~a~VR~----ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn------------------~h 164 (271)
T COG2171 107 EGVRIVPGAIVRL----GAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKN------------------SH 164 (271)
T ss_pred CceeecCccEEee----ccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCC------------------cc
Confidence 3466777666632 67888888888 47776 7888888888888888888888876 88
Q ss_pred ECCCCeE---------eeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 300 IGENTKI---------KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 300 ig~~~~i---------~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
||-++.| .-++|++||.||+++.+..+..++++++|+.|++|++++.+
T Consensus 165 iggGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki 221 (271)
T COG2171 165 IGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKI 221 (271)
T ss_pred cCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcce
Confidence 8888887 35888999999999888888888888888888888888753
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.95 E-value=6e-09 Score=93.23 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=39.9
Q ss_pred ccCCCCceeccCCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEec
Q 018109 213 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD 272 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~ 272 (360)
.+++++.+. .+.+++++.+ .++.+.++.||++|.|+ ++.+.+++||++|.|++++.|..
T Consensus 10 ~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 10 TLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred eECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 455555554 3566666666 45666677777777777 66677777777777777777654
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.6e-09 Score=83.29 Aligned_cols=76 Identities=20% Similarity=0.348 Sum_probs=58.0
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 319 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~ 319 (360)
+.|+++|.| .+++||++|.|+ ++.|.+++++.+ +.|+++|.|.+|+|++++.||+
T Consensus 2 ~~i~~~~~i-----~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~ 56 (104)
T cd04651 2 PYIGRRGEV-----KNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGR 56 (104)
T ss_pred ceecCCCEE-----EeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECC
Confidence 345555554 478999999999 999999888775 9999999999999999999999
Q ss_pred CcEEecCCCcccccccCCceEE
Q 018109 320 NVIIANSEGIQEADRSAEGFYI 341 (360)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i 341 (360)
++.+.+ +.+++.+.+++++.+
T Consensus 57 ~~~i~~-siig~~~~Ig~~~~v 77 (104)
T cd04651 57 NAVIRR-AIIDKNVVIPDGVVI 77 (104)
T ss_pred CCEEEe-EEECCCCEECCCCEE
Confidence 999965 333333333333333
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.5e-09 Score=79.09 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=49.8
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 319 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~ 319 (360)
+.|++++.|++ +++||++|.|++++.|++++++.+ +.|++++.|.+|++++++.|++
T Consensus 6 ~~I~~~~~i~~----~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 6 AKIGKTAKIGP----NVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred CEECCCCEECC----CCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 34455555443 678888999999999988877765 8999999999999999999999
Q ss_pred CcEEec
Q 018109 320 NVIIAN 325 (360)
Q Consensus 320 ~~~~~~ 325 (360)
++.+.+
T Consensus 63 ~~~~~~ 68 (80)
T cd05824 63 WTRLEN 68 (80)
T ss_pred CcEEec
Confidence 888855
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=87.67 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=65.7
Q ss_pred CCCccCCCCceeccCCCCCCcee-cCceee----ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccch
Q 018109 210 MFSFYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYET 283 (360)
Q Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~----~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~ 283 (360)
+..|+++++.+-.+++|+..+.+ .++.++ ...||++|.|. ++++. +.-+.-+.||++++|++.+++-.
T Consensus 16 ~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH-~~~~~p~~IG~~vtIGH~aivHG----- 89 (176)
T COG0663 16 PTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIH-ADPGYPVTIGDDVTIGHGAVVHG----- 89 (176)
T ss_pred CceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEe-cCCCCCeEECCCcEEcCccEEEE-----
Confidence 45788888888888888888777 556664 67899999988 55553 32234444444444444444433
Q ss_pred hHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCccccccc
Q 018109 284 DAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRS 335 (360)
Q Consensus 284 ~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~ 335 (360)
|+||++|.|+ +++|-++|+||++|+++..+.+....++
T Consensus 90 --------------c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~ 128 (176)
T COG0663 90 --------------CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEI 128 (176)
T ss_pred --------------eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCC
Confidence 5666666665 5666666666666666655544444333
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-08 Score=89.53 Aligned_cols=133 Identities=21% Similarity=0.141 Sum_probs=71.9
Q ss_pred ceeccCCCCCCceec-Cceee-ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCC
Q 018109 219 PIYTSRRNLPPSKID-DSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 294 (360)
Q Consensus 219 ~v~~~~~~~~~~~~~-~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 294 (360)
++++++.|+|.+.+. +..|. =++||+++.|+ ++.|. +++|--.+.||.++.|.+...+|...++-| +.+.
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlK------ykge 78 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLK------YKGE 78 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccc------cCCC
Confidence 444444555544442 22221 35566666666 44553 566666677777777777777776544443 1111
Q ss_pred CcceEECCCCeEe--------------eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCc
Q 018109 295 RVPVGIGENTKIK--------------ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 358 (360)
Q Consensus 295 ~~~~~ig~~~~i~--------------~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 358 (360)
.-.+.||++|.|+ -+.||.|+.+-+++.++.-+.++.++++..++.+. |.+.||+.+.||..+
T Consensus 79 ~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLA-GHV~igD~aiiGG~s 155 (260)
T COG1043 79 PTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLA-GHVEVGDYAIIGGLS 155 (260)
T ss_pred ceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEe-ccEEECCEEEEcCcc
Confidence 1127788888882 24455555555555554444444444444444443 335667777777665
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-08 Score=75.79 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=58.3
Q ss_pred CCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCC
Q 018109 226 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 303 (360)
Q Consensus 226 ~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ 303 (360)
+++++.+ +++.+.++.|+++|.|+ ++.|.+++|++++.|++++.|.++++..+ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~-------------------~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG-------------------AVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC-------------------CEECCC
Confidence 4555566 45666788999999998 78888999999999999999987666554 888888
Q ss_pred CeEe-eeEecCCCEECC
Q 018109 304 TKIK-ECIIDKNARIGK 319 (360)
Q Consensus 304 ~~i~-~~~i~~~~~ig~ 319 (360)
+.|. ++.|+++++||+
T Consensus 63 ~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 63 CTIPPGSLISFGVVIGD 79 (79)
T ss_pred CEECCCCEEeCCcEeCc
Confidence 8776 577777776663
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=89.31 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=4.8
Q ss_pred ceeecCCHH
Q 018109 187 YWEDIGTIR 195 (360)
Q Consensus 187 ~w~digtp~ 195 (360)
++.-++++.
T Consensus 59 ~iiai~~~~ 67 (197)
T cd03360 59 FVVAIGDNK 67 (197)
T ss_pred EEEecCCHH
Confidence 445556663
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=89.16 Aligned_cols=92 Identities=18% Similarity=0.166 Sum_probs=40.2
Q ss_pred ceeecCCHHHHHHHHHHhhcCC-CCCCccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecC
Q 018109 187 YWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIR 261 (360)
Q Consensus 187 ~w~digtp~~~~~a~~~~l~~~-~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~ 261 (360)
.+..++.+....+....+.... ....++.+.+.+.+.+.+++++.+ .++.|. ++.||++|.|. ++.|. ++.||++
T Consensus 62 ~iiai~~~~~~~~i~~~l~~~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~ 141 (201)
T TIGR03570 62 LVVAIGDNKLRRRLFEKLKAKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDY 141 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCC
Confidence 4555555555555554444332 222333333444444444444444 233332 34455555554 44442 3444444
Q ss_pred eEECCCCEEeceEEECC
Q 018109 262 SRINANVHLKDTMMLGA 278 (360)
Q Consensus 262 ~~i~~~~~i~~~~~~~~ 278 (360)
+.|++++.+...+.+++
T Consensus 142 ~~i~~~~~i~~~~~ig~ 158 (201)
T TIGR03570 142 VHIAPGVTLSGGVVIGE 158 (201)
T ss_pred CEECCCCEEeCCcEECC
Confidence 44444444444444444
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-08 Score=79.05 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=45.1
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCE
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 316 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ 316 (360)
++.|+++|.|+ ++.|. +++||++|.|+. .|.++++++. +.++++++|.+++||++++
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 45566666665 44443 466666666654 4556666554 7788888888888888888
Q ss_pred ECCCcEEecC
Q 018109 317 IGKNVIIANS 326 (360)
Q Consensus 317 ig~~~~~~~~ 326 (360)
||+++.+.|-
T Consensus 88 ig~~~~~~~~ 97 (101)
T cd05635 88 LGAGTNNSDL 97 (101)
T ss_pred ECCCceeccc
Confidence 8888877663
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.7e-08 Score=98.60 Aligned_cols=161 Identities=21% Similarity=0.262 Sum_probs=103.5
Q ss_pred ccccHHHHHHHhHhhcCCCCCC-CCeEEEEcCceeee-cC-HHHHHHH---HHHcCCcEEEEEeecCCCCCCcccEEEEC
Q 018109 25 FQGTADAVRQFHWLFEDPRNKV-IEDVLILSGDHLYR-MD-YMDFVQN---HRQSGADITISCLPMDDSRASDFGLMKIN 98 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~-~~~fLVv~gD~i~~-~d-l~~ll~~---h~~~~a~~tll~~~~~~~~~~~~g~v~~d 98 (360)
.++||.|+..|..++.+ +... +.-++|+++|+++. .+ |.+.++. ..+.+..+|+...|... .+.||++..+
T Consensus 88 ~rnTApaialaa~~~~~-~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~P--eTgyGYI~~g 164 (478)
T PRK15460 88 GRNTAPAIALAALAAKR-HSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLP--ETGYGYIRRG 164 (478)
T ss_pred CCChHHHHHHHHHHHHH-hcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCC--CCCCCeEEeC
Confidence 46999999988887753 1111 35788999999754 33 5444443 22345656666655443 4789999875
Q ss_pred CC---------CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchh---
Q 018109 99 NE---------GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFG--- 166 (360)
Q Consensus 99 ~~---------g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~--- 166 (360)
+. -+|.+|.|||+...++. .+....++||+|+|+|+.+.|...++...|......
T Consensus 165 ~~~~~~~~~~~~~V~~F~EKPd~~tA~~-------------yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~ 231 (478)
T PRK15460 165 EVSAGEQDTVAFEVAQFVEKPNLETAQA-------------YVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKA 231 (478)
T ss_pred CccccccccCceEeeEEEeCCCHHHHHH-------------HHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHH
Confidence 31 26999999999865321 112235799999999999977766665443211000
Q ss_pred --------------hcccc--------cc-cc-cCceEEEEeCCceeecCCHHHHHHHH
Q 018109 167 --------------SEIIP--------AS-AN-EQFLKAYLFNDYWEDIGTIRSFFEAN 201 (360)
Q Consensus 167 --------------~~~l~--------~~-i~-~~~I~~~~~~g~w~digtp~~~~~a~ 201 (360)
.+.++ .+ ++ -.++...+.+..|.|+|+|.++.+..
T Consensus 232 ~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 232 MSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 11111 11 12 25688888888899999999998763
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-08 Score=93.43 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=7.6
Q ss_pred eEecCCCEECCCcEE
Q 018109 309 CIIDKNARIGKNVII 323 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~ 323 (360)
+.||++|.||.++.+
T Consensus 251 V~IGe~~lIGagA~I 265 (341)
T TIGR03536 251 ISVGEGCLLGANAGI 265 (341)
T ss_pred EEECCCcEECCCCEE
Confidence 445555555555554
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.2e-08 Score=73.69 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=53.3
Q ss_pred ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEee-eEecCCCE
Q 018109 239 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-CIIDKNAR 316 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~-~~i~~~~~ 316 (360)
++.|+++|.|+ ++.|.++++++++.|++++.|.++++..+ +.+++++.+.+ ++++++++
T Consensus 17 ~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~~~~~~~~ig~~~~ 77 (80)
T cd05824 17 NVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWTRLENVTVLGDDVT 77 (80)
T ss_pred CCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCcEEecCEEECCceE
Confidence 67888888887 78888999999999999999999876654 89999999985 88888888
Q ss_pred ECC
Q 018109 317 IGK 319 (360)
Q Consensus 317 ig~ 319 (360)
|++
T Consensus 78 i~~ 80 (80)
T cd05824 78 IKD 80 (80)
T ss_pred ECC
Confidence 764
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.9e-08 Score=80.67 Aligned_cols=53 Identities=8% Similarity=0.087 Sum_probs=30.7
Q ss_pred CceeccCCCCCCcee-cCceee-ceEECCCCEEcceEE-eeeEEecCeEECCCCEEe
Q 018109 218 KPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFITSSFI-EHSVVGIRSRINANVHLK 271 (360)
Q Consensus 218 ~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~~~~i-~~~~ig~~~~i~~~~~i~ 271 (360)
..+..++.|++++.+ .++.+. ++.||++|.|.. .+ .+++||++|.|++++.|.
T Consensus 8 ~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~ 63 (147)
T cd04649 8 DRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM 63 (147)
T ss_pred CEECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE
Confidence 344445555555555 333332 566666666652 22 256777777777777776
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-08 Score=80.96 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=45.1
Q ss_pred CCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEec--------
Q 018109 243 SHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIID-------- 312 (360)
Q Consensus 243 ~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~-------- 312 (360)
+++|.|. ++.|. +++||++|.|++++.|.+.+.+|++ +.|++++.+.++.+.
T Consensus 2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~~ 63 (119)
T cd03358 2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDD------------------VFIGPNVVFTNDLYPRSKIYRKW 63 (119)
T ss_pred CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCC------------------cEEcCCeEEecCCCCcccccccc
Confidence 3444444 33332 5677777777777777665566654 666666666544332
Q ss_pred --CCCEECCCcEEecCCCcccccccCCceEEeCCe
Q 018109 313 --KNARIGKNVIIANSEGIQEADRSAEGFYIRSGV 345 (360)
Q Consensus 313 --~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (360)
.++.||+++.+++.+.+.....+++++.|+.++
T Consensus 64 ~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~ 98 (119)
T cd03358 64 ELKGTTVKRGASIGANATILPGVTIGEYALVGAGA 98 (119)
T ss_pred ccCCcEECCCcEECcCCEEeCCcEECCCCEEccCC
Confidence 334455555555544444444444444444443
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-07 Score=75.58 Aligned_cols=65 Identities=18% Similarity=0.334 Sum_probs=36.7
Q ss_pred eEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEE
Q 018109 240 SIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARI 317 (360)
Q Consensus 240 ~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~i 317 (360)
..|++++.|. ++.+. .++||+++.|++++.|++.+.+|.+ +.||. .|.+|+|+.++.|
T Consensus 12 v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~------------------~~Ig~--~i~~svi~~~~~i 71 (101)
T cd05635 12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPT------------------CKIGG--EVEDSIIEGYSNK 71 (101)
T ss_pred EEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCC------------------CEECC--EECccEEcCCCEe
Confidence 3444444444 33332 4666666666666666665555554 56653 4556666666666
Q ss_pred CCCcEEe
Q 018109 318 GKNVIIA 324 (360)
Q Consensus 318 g~~~~~~ 324 (360)
+.++.++
T Consensus 72 ~~~~~lg 78 (101)
T cd05635 72 QHDGFLG 78 (101)
T ss_pred cCcCEEe
Confidence 6665554
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-08 Score=93.74 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=92.6
Q ss_pred CceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeE
Q 018109 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSR 263 (360)
Q Consensus 186 g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~ 263 (360)
+.|++++.++-+.... -++.+.-......+.+..++.+++++.+ +++.|..|+||.+|.|+ .+.|.+|.+-+++.
T Consensus 300 ~~y~eiN~~k~~~~l~---~e~~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~ 376 (433)
T KOG1462|consen 300 LSYMEINRDKKLKKLC---SEAKFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVV 376 (433)
T ss_pred HHHHhhhHHHHHHHhc---cccccccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcE
Confidence 5688888644333322 1222111222334667788888899999 57889999999999999 88899999999999
Q ss_pred ECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecC
Q 018109 264 INANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 264 i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~ 326 (360)
||+++.|+++++..+ +.||++|.+.||+||.+-++.+..+.++.
T Consensus 377 vg~G~~IensIIg~g-------------------A~Ig~gs~L~nC~Ig~~yvVeak~~~~~e 420 (433)
T KOG1462|consen 377 VGDGVNIENSIIGMG-------------------AQIGSGSKLKNCIIGPGYVVEAKGKHGGE 420 (433)
T ss_pred ecCCcceecceeccc-------------------ceecCCCeeeeeEecCCcEEccccccccc
Confidence 999999999987664 99999999999999999999977766653
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.1e-08 Score=82.74 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=50.8
Q ss_pred EECCCCEEcceEEeeeEEecCeEECCCCEEece---EEECCcccchhHHHHhhhhCCCcceEECCCCeEee---------
Q 018109 241 IISHGSFITSSFIEHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE--------- 308 (360)
Q Consensus 241 ~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~--------- 308 (360)
.|++.+.|.+. .+..||+++.|++++.|... +.+|++ |.|+++|.|..
T Consensus 9 ~i~~~~~i~g~--~~I~ig~~~~I~~~~~I~g~~~~v~IG~~------------------~~I~~~~~I~~~~~~~~~~~ 68 (161)
T cd03359 9 KVSRKSVICGS--QNIVLNGKTIIQSDVIIRGDLATVSIGRY------------------CILSEGCVIRPPFKKFSKGV 68 (161)
T ss_pred eecchheeccC--CCEEECCceEEcCCCEEeCCCcceEECCC------------------cEECCCCEEeCCccccCCCc
Confidence 44444444321 15678888888888877753 577775 77777777753
Q ss_pred ----eEecCCCEECCCcEEecCCCcccccccCCceEEeCC
Q 018109 309 ----CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 344 (360)
Q Consensus 309 ----~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (360)
+.||+++.|++++.+.+ ..+.+++.|+++++|+.+
T Consensus 69 ~~~~v~Ig~~~~Ig~~~~i~~-~~Ig~~v~Ig~~~~Ig~~ 107 (161)
T cd03359 69 AFFPLHIGDYVFIGENCVVNA-AQIGSYVHIGKNCVIGRR 107 (161)
T ss_pred cccCeEECCccEECCCCEEEe-eEEcCCcEECCCCEEcCC
Confidence 46777777777777654 233344444444444444
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.3e-08 Score=85.64 Aligned_cols=40 Identities=28% Similarity=0.372 Sum_probs=26.2
Q ss_pred eEECCCCEEc-ceEEe---eeEEecCeEECCCCEEec--eEEECCc
Q 018109 240 SIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKD--TMMLGAD 279 (360)
Q Consensus 240 ~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~--~~~~~~~ 279 (360)
+.||+++.|. ++.+. +..||+++.|++++.|.+ .+.+|++
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~ 97 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAH 97 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCC
Confidence 4555566655 44442 577888888888888874 4555654
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=83.18 Aligned_cols=103 Identities=19% Similarity=0.190 Sum_probs=62.0
Q ss_pred eeccCCCCCCceec-CceeeceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCC
Q 018109 220 IYTSRRNLPPSKID-DSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 294 (360)
Q Consensus 220 v~~~~~~~~~~~~~-~~~i~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 294 (360)
++.++.|.+|+.+. + .++.||+++.|. ++.+. +..||++|.|++++.|...-+-- +...+. .+...+
T Consensus 58 ig~~~~I~~~~~~~~g---~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~-~~~~r~----~g~~~~ 129 (203)
T PRK09527 58 VGENAWVEPPVYFSYG---SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPV-HHELRK----NGEMYS 129 (203)
T ss_pred cCCCcEEcCCEEEeeC---CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCC-Chhhcc----cccccc
Confidence 44556677776652 1 266788888888 66663 47899999999999886321000 000000 000000
Q ss_pred CcceEECCCCeEe-eeEecCCCEECCCcEEecCCCccc
Q 018109 295 RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQE 331 (360)
Q Consensus 295 ~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~ 331 (360)
.++.||++|+|+ +++|..+++||++++++.++.+.+
T Consensus 130 -~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~k 166 (203)
T PRK09527 130 -FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTK 166 (203)
T ss_pred -CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 137777777776 677777777777777777655554
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.2e-07 Score=84.73 Aligned_cols=163 Identities=17% Similarity=0.148 Sum_probs=104.4
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEE--EeecCCCCCCcccEEE--EC
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS--CLPMDDSRASDFGLMK--IN 98 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll--~~~~~~~~~~~~g~v~--~d 98 (360)
..||+++ ..+...++. ..+.+++++||. +.+.+ +..+++.+++. ++++++ +.+...+++..||.+. .|
T Consensus 119 ~~GT~~~-~~a~~~l~~----~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv~~ 192 (293)
T PLN02917 119 RNGTERC-NEALKKLEK----KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCVVD 192 (293)
T ss_pred CCchHHH-HHHHHhccC----CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEEEC
Confidence 4588887 577777752 137899999999 55554 79999988654 333332 2233333478899875 67
Q ss_pred CCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccccc--c-
Q 018109 99 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASA--N- 175 (360)
Q Consensus 99 ~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i--~- 175 (360)
++|+++.|..++-..... .++++. .-.+.++|+|+|+.+.|. .+.+..++ +...+++|++++ +
T Consensus 193 ~~g~alyfsr~~Ipe~kd----------~~~~~~--~i~~~n~Giy~f~~~~L~-~l~~l~~~-n~e~e~yLtdl~~le~ 258 (293)
T PLN02917 193 NQGYAIYFSRGLIPYNKS----------GKVNPQ--FPYLLHLGIQSYDAKFLK-IYPELPPT-PLQLEEDLEQLKVLEN 258 (293)
T ss_pred CCCeEEEeecCcCCcCCC----------cccccc--cceEEEEEEEEeCHHHHH-HHHcCCCC-cccchhccHHHHHHhC
Confidence 778877555332211000 001111 135889999999999998 44554322 223455666644 3
Q ss_pred cCceEEEEeCCceeecCCHHHHHHHHHHhhcC
Q 018109 176 EQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 207 (360)
Q Consensus 176 ~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~ 207 (360)
+.+|.+++.+....-++||++|.++++.+.++
T Consensus 259 G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 259 GYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred CCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 56788888776778999999999999887543
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.5e-08 Score=93.57 Aligned_cols=92 Identities=17% Similarity=0.285 Sum_probs=73.5
Q ss_pred CccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhh
Q 018109 212 SFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL 290 (360)
Q Consensus 212 ~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 290 (360)
.++++.+.+ ..+.|+++|.|.+ .+.+++|+++|.|+ ++.|.+|+|++++.|++++.|.++++..+
T Consensus 283 ~~i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~------------ 348 (380)
T PRK05293 283 QYIAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN------------ 348 (380)
T ss_pred CEECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC------------
Confidence 455666666 3456777777743 46689999999998 88899999999999999999988766554
Q ss_pred hhCCCcceEECCCCeEee-----eEecCCCEECCCcEEe
Q 018109 291 LAEGRVPVGIGENTKIKE-----CIIDKNARIGKNVIIA 324 (360)
Q Consensus 291 ~~~~~~~~~ig~~~~i~~-----~~i~~~~~ig~~~~~~ 324 (360)
+.|++++.+.+ .+||++++|+++++|+
T Consensus 349 -------~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 349 -------AVIGDGVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred -------CEECCCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 89999999975 8888888888887763
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.1e-08 Score=89.44 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=43.7
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEEC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 318 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig 318 (360)
+.||+++.|.+.. ..+||+++.||++|.|...+.+|++... .|....+||++|.|+ +|.|..+++||
T Consensus 148 a~IG~g~~I~h~~--givIG~~a~IGdnv~I~~~VtiGg~~~~----------~~~~~p~IGd~V~IGaga~Ilggv~IG 215 (273)
T PRK11132 148 AKIGRGIMLDHAT--GIVIGETAVIENDVSILQSVTLGGTGKT----------SGDRHPKIREGVMIGAGAKILGNIEVG 215 (273)
T ss_pred ceECCCeEEcCCC--CeEECCCCEECCCCEEcCCcEEecCccc----------CCCcCCEECCCcEEcCCCEEcCCCEEC
Confidence 3444444444211 4578888888888888877777752000 000014566666664 55555666666
Q ss_pred CCcEEecCCCcc
Q 018109 319 KNVIIANSEGIQ 330 (360)
Q Consensus 319 ~~~~~~~~~~~~ 330 (360)
++++|+.++.+.
T Consensus 216 ~~a~IGAgSvV~ 227 (273)
T PRK11132 216 RGAKIGAGSVVL 227 (273)
T ss_pred CCCEECCCCEEC
Confidence 666665554433
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=69.51 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=19.5
Q ss_pred EECCCCEEc-ceEEe-eeEEecCeEECCCCEEece
Q 018109 241 IISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDT 273 (360)
Q Consensus 241 ~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~ 273 (360)
.|+++|.|. ++.|. ++.||+++.|++++.|.++
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~ 36 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAA 36 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEec
Confidence 455555555 44444 3667777777777666654
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-07 Score=86.88 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=8.0
Q ss_pred ccEEEECCCCceEEEE
Q 018109 92 FGLMKINNEGRVLSFS 107 (360)
Q Consensus 92 ~g~v~~d~~g~V~~~~ 107 (360)
+|...+..+|.+++..
T Consensus 6 ~G~at~~~~g~~ld~w 21 (319)
T TIGR03535 6 WGLATVTADGTVLDTW 21 (319)
T ss_pred EEEEEEcCCCCEEEEe
Confidence 3444444556655543
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.2e-07 Score=80.04 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=18.2
Q ss_pred eEECCCCEEc-ceEEe---eeEEecCeEECCCCEEec
Q 018109 240 SIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKD 272 (360)
Q Consensus 240 ~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~ 272 (360)
..||+++.|+ ++.+. .++||++|.|++++.|.+
T Consensus 66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~ 102 (192)
T PRK09677 66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITD 102 (192)
T ss_pred EEECCCCEECCCcEEccCceEEECCCCEECCCeEEEC
Confidence 4555555555 44442 455666666666665554
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-07 Score=87.23 Aligned_cols=11 Identities=9% Similarity=0.323 Sum_probs=4.6
Q ss_pred EcCCcEeCCCc
Q 018109 348 ILKNSVITDGF 358 (360)
Q Consensus 348 ig~~~~i~~g~ 358 (360)
||++|.||+|+
T Consensus 269 IGd~~iIGAGa 279 (341)
T TIGR03536 269 LGDRCTVEAGL 279 (341)
T ss_pred ECCCCEECCCC
Confidence 34444444443
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-07 Score=77.83 Aligned_cols=98 Identities=16% Similarity=0.255 Sum_probs=77.1
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEec------------eEEECCcccchhHHHHhhhhCCCcceEECCCCeE
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKD------------TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI 306 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i 306 (360)
.+++.++|.|.+ .+.++.+|..|.++.++.|++ .+++|+. +.|++.|.+
T Consensus 39 KtIv~~g~iIRG-DLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdh------------------VFieE~cVV 99 (184)
T KOG3121|consen 39 KTIVEEGVIIRG-DLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDH------------------VFIEEECVV 99 (184)
T ss_pred cEEEeeCcEEec-ccccceEcceEEeccccccCCchHHhcCCceeeeeeecce------------------EEEecceEe
Confidence 678888888884 566788999999999999986 6788887 999999999
Q ss_pred eeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCC
Q 018109 307 KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITD 356 (360)
Q Consensus 307 ~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~ 356 (360)
+-+.||..+++|++++|++...+.+.++|.|++.+.+.++ +.+.+++++
T Consensus 100 nAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~-vppy~~~~g 148 (184)
T KOG3121|consen 100 NAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETL-VPPYSTIGG 148 (184)
T ss_pred ehhhheeeeEeccceeEcCceEhhhheeccCCcccCcccc-cCCceEEcC
Confidence 8888888888888888888877777888888877665543 355555554
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-07 Score=68.28 Aligned_cols=51 Identities=27% Similarity=0.526 Sum_probs=32.1
Q ss_pred eEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEee---------eEecCCCEECCCcEEe
Q 018109 256 SVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CIIDKNARIGKNVIIA 324 (360)
Q Consensus 256 ~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~---------~~i~~~~~ig~~~~~~ 324 (360)
++||+++.|++++.|.+.+.+|++ +.|++++.|.+ +.||++|.|+.++.+.
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~ 60 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDN------------------VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCC------------------CEECCCCEEEeccCCCccCCcEECCCcEECCCCEEe
Confidence 356777777777777776667765 77777777764 3444444444444443
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-07 Score=85.90 Aligned_cols=76 Identities=24% Similarity=0.289 Sum_probs=40.9
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEEC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 318 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig 318 (360)
+.||+++.|.+.. .++||+++.|+++|.|..++.+|+...+ .|...++||++|.|+ ++.|..+++||
T Consensus 167 A~IG~gv~Idh~t--GVVIGe~a~IGdnv~I~~~VtLGg~g~~----------~~~r~piIGd~V~IGagA~Ilggi~IG 234 (294)
T PLN02694 167 AKIGKGILFDHAT--GVVIGETAVIGNNVSILHHVTLGGTGKA----------CGDRHPKIGDGVLIGAGATILGNVKIG 234 (294)
T ss_pred ceecCCEEEeCCC--CeEECCCcEECCCCEEeecceeCCcccc----------cCCCccEECCCeEECCeeEECCCCEEC
Confidence 3444454444211 4788888888888888888888762100 000114555555554 44444444444
Q ss_pred CCcEEecCC
Q 018109 319 KNVIIANSE 327 (360)
Q Consensus 319 ~~~~~~~~~ 327 (360)
++++|+..+
T Consensus 235 d~a~IGAgS 243 (294)
T PLN02694 235 EGAKIGAGS 243 (294)
T ss_pred CCCEECCCC
Confidence 444444443
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.1e-07 Score=80.68 Aligned_cols=65 Identities=20% Similarity=0.157 Sum_probs=39.7
Q ss_pred CCCCCceec-Cceee---ceEECCCCEEcceEEeeeEEecCeEECCCCEEe--ceEEECCcccchhHHHHhhhhCCCcce
Q 018109 225 RNLPPSKID-DSKIV---DSIISHGSFITSSFIEHSVVGIRSRINANVHLK--DTMMLGADFYETDAEVASLLAEGRVPV 298 (360)
Q Consensus 225 ~~~~~~~~~-~~~i~---~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (360)
.+.+|..+. +..+. ++.++.+|++.-.......||+++.|++++.|. ..+.+|++ |
T Consensus 31 ~i~~pf~~~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~------------------v 92 (192)
T PRK09677 31 IIRFPFYIRNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRD------------------T 92 (192)
T ss_pred EEcCCEEEcCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCC------------------C
Confidence 455666552 22221 445555555431011257799999999999887 46778876 7
Q ss_pred EECCCCeEe
Q 018109 299 GIGENTKIK 307 (360)
Q Consensus 299 ~ig~~~~i~ 307 (360)
.|++++.|.
T Consensus 93 ~Ig~~v~I~ 101 (192)
T PRK09677 93 LIASKVFIT 101 (192)
T ss_pred EECCCeEEE
Confidence 777777764
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.4e-07 Score=77.76 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=54.8
Q ss_pred ceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecC
Q 018109 239 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK 313 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~ 313 (360)
+..||+++.|+ ++.+. +.+||+++.|++++.|..+..--+ ... ...+...+ .++.||++|+|+ +++|..
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~---~~~--~~~~~~~~-~~v~IG~~~~Ig~~a~I~~ 135 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLD---PEE--RNRGLEYA-KPITIGDNVWIGGGVIILP 135 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCC---hhH--ccccceec-CCcEeCCCEEECCCCEEeC
Confidence 45677777777 55553 568999999999998864311000 000 00000000 126677777765 566666
Q ss_pred CCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcE
Q 018109 314 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSV 353 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~ 353 (360)
+++||++++++.++.+.+. +.++.++.|.+++
T Consensus 136 gv~Ig~~~~VgagavV~~~--------vp~~~vv~G~PAk 167 (169)
T cd03357 136 GVTIGDNSVIGAGSVVTKD--------IPANVVAAGNPAR 167 (169)
T ss_pred CCEECCCCEECCCCEEccc--------cCCCcEEEccccE
Confidence 6666666666665544432 3344455555554
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.1e-07 Score=78.46 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=49.2
Q ss_pred ceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecC
Q 018109 239 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK 313 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~ 313 (360)
+..||++|.|+ ++.+. .++||++|.|++++.|....+.-. ... ..+. ..++.||++|.|. +|.|..
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~---~~~----~~~~--~~~i~Igd~~~Ig~~a~I~~ 141 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYS---DPH----FDLN--TAPIVIGEGCWLAADVFVAP 141 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCc---CCC----cccc--cCCEEEcCCcEEcCCCEEcC
Confidence 35667777776 55553 577888888888888753311100 000 0000 0126777777776 677777
Q ss_pred CCEECCCcEEecCCCcc
Q 018109 314 NARIGKNVIIANSEGIQ 330 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~ 330 (360)
+++||++++++..+.+.
T Consensus 142 Gv~Ig~~~vIga~svV~ 158 (182)
T PRK10502 142 GVTIGSGAVVGARSSVF 158 (182)
T ss_pred CCEECCCCEECCCCEEe
Confidence 77777777777654443
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.6e-07 Score=90.26 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=73.5
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecC------
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDK------ 313 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~------ 313 (360)
+.+.+.+.+.++.+.++.||++|.| +++.|+++++..+ |.||++|.|.+|+|+.
T Consensus 293 ~~~~~~a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~ 352 (429)
T PRK02862 293 ARYLPPSKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYES 352 (429)
T ss_pred CCCCCCccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCccccc
Confidence 3445555666667778999999999 8999998855544 9999999999999975
Q ss_pred -------------CCEECCCcEEecCCCcccccccCCceEEeCCe-----------EEEcCC-cEeCCCccC
Q 018109 314 -------------NARIGKNVIIANSEGIQEADRSAEGFYIRSGV-----------TVILKN-SVITDGFVI 360 (360)
Q Consensus 314 -------------~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~ig~~-~~i~~g~~i 360 (360)
++.||++|.|.+ +.+.+.+.|++++.+..+. .+|+.+ +.|+.++++
T Consensus 353 ~~~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
T PRK02862 353 SEEREELRKEGKPPLGIGEGTTIKR-AIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVI 423 (429)
T ss_pred ccccccccccCCcccEECCCCEEEE-EEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCC
Confidence 799999999976 4556666777777774222 234555 556666543
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.3e-07 Score=77.72 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=60.4
Q ss_pred ceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecC
Q 018109 239 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK 313 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~ 313 (360)
+..||+++.|. ++++. ...||++|.|++++.|....+-.+. .++ ..+..- +.++.||++|+|+ +|+|..
T Consensus 73 ~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~-~~~----~~~~~~-~~~v~IGd~v~IG~~a~I~~ 146 (183)
T PRK10092 73 NIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDP-VAR----NSGAEL-GKPVTIGNNVWIGGRAVINP 146 (183)
T ss_pred CcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCCh-HHc----ccccee-cCCeEECCCcEECCCCEECC
Confidence 56777777777 55553 3479999999999988643221110 000 000000 0137788888885 777777
Q ss_pred CCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 314 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
+++||++++|+.++.+.+. +.+++++.|..+++
T Consensus 147 gv~IG~~~vIgagsvV~~d--------i~~~~i~~G~PAr~ 179 (183)
T PRK10092 147 GVTIGDNVVVASGAVVTKD--------VPDNVVVGGNPARI 179 (183)
T ss_pred CCEECCCCEECCCCEEccc--------cCCCcEEEecCcEE
Confidence 7777777777776554433 33455565666654
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-06 Score=81.17 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=5.0
Q ss_pred ceEECCCCEEc
Q 018109 239 DSIISHGSFIT 249 (360)
Q Consensus 239 ~~~i~~~~~i~ 249 (360)
.++||+|+.|.
T Consensus 165 GAyLGeGtvVm 175 (319)
T TIGR03535 165 GAHLAEGTTVM 175 (319)
T ss_pred ccEECCCCEEc
Confidence 34444444444
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.6e-07 Score=85.08 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=17.8
Q ss_pred eeEEecCeEECCCCEEeceEEECC
Q 018109 255 HSVVGIRSRINANVHLKDTMMLGA 278 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~~~~~~ 278 (360)
.++||+++.||+++.|..++.+|+
T Consensus 246 giVIGe~avIGdnV~I~~gVtIGg 269 (360)
T PLN02357 246 GVVIGETAVVGNNVSILHNVTLGG 269 (360)
T ss_pred ceEECCCCEECCCCEEeCCceecC
Confidence 467777777777777777777765
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.9e-07 Score=77.21 Aligned_cols=69 Identities=28% Similarity=0.316 Sum_probs=39.4
Q ss_pred eeEEecCeEECCCCEEe--ceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-------------------eeEecC
Q 018109 255 HSVVGIRSRINANVHLK--DTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------------------ECIIDK 313 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-------------------~~~i~~ 313 (360)
+..||+++.|++++.|. ..+.+|++ +.|+++|.|. .+.||+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~------------------v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~ 123 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDN------------------VLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGD 123 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCC------------------CEECCCCEEEeCCCCCChhHccccceecCCcEeCC
Confidence 45677777777777665 35666665 6777777762 234444
Q ss_pred CCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 314 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
+|.||.++++. .++.|+++++|+.++++
T Consensus 124 ~~~Ig~~a~I~------~gv~Ig~~~~VgagavV 151 (169)
T cd03357 124 NVWIGGGVIIL------PGVTIGDNSVIGAGSVV 151 (169)
T ss_pred CEEECCCCEEe------CCCEECCCCEECCCCEE
Confidence 44444444443 34555555666555544
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.4e-07 Score=89.44 Aligned_cols=94 Identities=20% Similarity=0.265 Sum_probs=70.5
Q ss_pred CCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecC----------
Q 018109 244 HGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDK---------- 313 (360)
Q Consensus 244 ~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~---------- 313 (360)
+++.+.++.+.+|+|+++|.|+ ++.|+++++ +.+ |.|+++|.|.+|++..
T Consensus 304 ~~~~~~~~~i~~s~I~~~~~I~-~~~I~~svI-~~~------------------~~Ig~~~~I~~sii~g~~~~~~~~~~ 363 (436)
T PLN02241 304 PPSKIEDCRITDSIISHGCFLR-ECKIEHSVV-GLR------------------SRIGEGVEIEDTVMMGADYYETEEEI 363 (436)
T ss_pred CCcEecCCeEEEeEEcCCcEEc-CeEEEeeEE-cCC------------------CEECCCCEEEEeEEECCCcccccccc
Confidence 4555566667679999999999 999998854 544 9999999999888854
Q ss_pred ------C---CEECCCcEEecCCCcccccccCCceEEe-----CCeEEEcCCcEeCCCc
Q 018109 314 ------N---ARIGKNVIIANSEGIQEADRSAEGFYIR-----SGVTVILKNSVITDGF 358 (360)
Q Consensus 314 ------~---~~ig~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~ig~~~~i~~g~ 358 (360)
+ ++||++|++.+ +.+..++.|++++.|. ++++++|++++|+.|+
T Consensus 364 ~~~~~~~~~~~~Ig~~~~i~~-~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~ 421 (436)
T PLN02241 364 ASLLAEGKVPIGIGENTKIRN-AIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGI 421 (436)
T ss_pred ccccccCCcceEECCCCEEcc-eEecCCCEECCCcEEecccccCCccccccccEEeCCE
Confidence 3 38999999975 4466667777777775 3334567777777774
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=68.94 Aligned_cols=96 Identities=17% Similarity=0.252 Sum_probs=50.8
Q ss_pred EECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCC
Q 018109 241 IISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNA 315 (360)
Q Consensus 241 ~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~ 315 (360)
.||++|.|+ ++.|. ...||++|.|++++.|....+ ++...+. .+.. +++.||++|+|. ++.|..++
T Consensus 5 ~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~h---~~~~~~~----~~~~--~~v~Ig~~~~ig~~~~i~~g~ 75 (107)
T cd05825 5 TIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSH---DYRSPAF----PLIT--APIVIGDGAWVAAEAFVGPGV 75 (107)
T ss_pred EECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCCC---CCCcCcc----ceec--CCEEECCCCEECCCCEECCCC
Confidence 455555555 44442 467888888888887753210 0000000 0000 126777777776 67777777
Q ss_pred EECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcE
Q 018109 316 RIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSV 353 (360)
Q Consensus 316 ~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~ 353 (360)
+||+++.++..+.+.+. +.++.+..|..++
T Consensus 76 ~Ig~~~~i~~gs~v~~~--------~~~~~~~~G~Pa~ 105 (107)
T cd05825 76 TIGEGAVVGARSVVVRD--------LPAWTVYAGNPAV 105 (107)
T ss_pred EECCCCEECCCCEEeCc--------CCCCCEEECCccE
Confidence 77777777666554432 2234445555554
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-06 Score=78.66 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=30.1
Q ss_pred ECCCCEEc-ceEE---eeeEEecCeEECCCCEEec--eEEECCcccchhHHHHhhhhCCCcceEECCCCeEe
Q 018109 242 ISHGSFIT-SSFI---EHSVVGIRSRINANVHLKD--TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 307 (360)
Q Consensus 242 i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~ 307 (360)
+|+++.|. +..+ .+..||+++.|+.++.|.+ .+.+|++ |.|+++|.|.
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~~I~IGd~------------------v~Ig~~v~I~ 111 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDN------------------VLIAPNVTLS 111 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCCCEEECCC------------------CEECCCCEEE
Confidence 45555555 3333 2577777777777777743 4667765 7777777763
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-06 Score=85.24 Aligned_cols=96 Identities=21% Similarity=0.353 Sum_probs=63.7
Q ss_pred CeEEEEcCce-eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCC---------ceEEEEecCCcccccc
Q 018109 48 EDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG---------RVLSFSEKPKGKDLKA 117 (360)
Q Consensus 48 ~~fLVv~gD~-i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g---------~V~~~~ekp~~~~~~~ 117 (360)
.-++|..+|. +...+ ...+. +.+ +.++++..+.+-.-.+..|++..|+++ .+.+|..||+...-
T Consensus 54 pGv~V~s~D~vl~~~~-~~~~~-~~~--~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem-- 127 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPD-DPLID-WDE--PGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEM-- 127 (414)
T ss_pred cceEEEecccccccCc-cccCC-CCC--CCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHH--
Confidence 4689999994 44333 22332 222 567777777765446789999999888 79999999987541
Q ss_pred ccccccccccccccccccCceeeeeEEEEeHHHHHHHHHh
Q 018109 118 MAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 157 (360)
Q Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~ 157 (360)
.-. .....+.....++|++.|+.++.+.++..
T Consensus 128 -~~~-------~av~~~~~~~ldsG~~~~s~~~~e~L~~~ 159 (414)
T PF07959_consen 128 -RAS-------GAVLPDGNVLLDSGIVFFSSKAVESLLYL 159 (414)
T ss_pred -HhC-------CcccCCCcccccccceeccHHHHHHHHHh
Confidence 100 11112235677999999999988877644
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.2e-07 Score=83.19 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=13.3
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEe
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIA 324 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~ 324 (360)
|.||.||.|. ++.||++|.||+++++.
T Consensus 200 V~IGaga~Ilggv~IG~~a~IGAgSvV~ 227 (273)
T PRK11132 200 VMIGAGAKILGNIEVGRGAKIGAGSVVL 227 (273)
T ss_pred cEEcCCCEEcCCCEECCCCEECCCCEEC
Confidence 4555555543 45555555555555444
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=70.11 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=19.8
Q ss_pred EECCCCEEc-ceEEe---eeEEecCeEECCCCEEece
Q 018109 241 IISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDT 273 (360)
Q Consensus 241 ~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~ 273 (360)
.||++|.|+ ++.|. ++.||++|.|++++.|.++
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEECCCCEEECC
Confidence 344444444 33332 4777777777777777755
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.7e-07 Score=85.80 Aligned_cols=63 Identities=19% Similarity=0.354 Sum_probs=50.7
Q ss_pred CCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCc
Q 018109 243 SHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNV 321 (360)
Q Consensus 243 ~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~ 321 (360)
.+.+.|+ .+.+.+++||++|.|+++ .+.++++..+ |.|+++|.|.+|+|++++.||.++
T Consensus 281 ~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~v~~~~ 340 (361)
T TIGR02091 281 PPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIR-------------------VRIGSGSTVEDSVIMGDVGIGRGA 340 (361)
T ss_pred CCceEecCCCEEECCEECCCCEECCC-EEEccEECCC-------------------CEECCCCEEeeeEEeCCCEECCCC
Confidence 3444555 345567899999999987 7887766544 999999999999999999999999
Q ss_pred EEec
Q 018109 322 IIAN 325 (360)
Q Consensus 322 ~~~~ 325 (360)
.+.+
T Consensus 341 ~l~~ 344 (361)
T TIGR02091 341 VIRN 344 (361)
T ss_pred EEee
Confidence 9864
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=85.14 Aligned_cols=91 Identities=15% Similarity=0.214 Sum_probs=51.6
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEEC
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 318 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig 318 (360)
++.|+++|.|. +++|+..+.|+++|.|+++++.++ |.||++|.|++|+| .++.|+
T Consensus 254 ~~~i~~~~~i~-----~~~i~~~~~Ig~~~~I~~~~i~~~-------------------~~Ig~~~~i~~~~i-~~s~i~ 308 (353)
T TIGR01208 254 RVVVGEGAKIV-----NSVIRGPAVIGEDCIIENSYIGPY-------------------TSIGEGVVIRDAEV-EHSIVL 308 (353)
T ss_pred CEEECCCCEEe-----CCEEECCcEECCCCEEcCcEECCC-------------------CEECCCCEEeeeEE-EeeEEc
Confidence 45555555553 566767778888888877765554 77777777765555 255555
Q ss_pred CCcEEecCC-CcccccccCCceEEeCCe-------EEEcCCcEeC
Q 018109 319 KNVIIANSE-GIQEADRSAEGFYIRSGV-------TVILKNSVIT 355 (360)
Q Consensus 319 ~~~~~~~~~-~~~~~~~~~~~~~i~~~~-------~~ig~~~~i~ 355 (360)
+++++.... .+ .++++++++.|++++ .++|+.+.|+
T Consensus 309 ~~~~i~~~~~~~-~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 309 DESVIEGVQARI-VDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred CCCEEcCCccee-ecCEEcCCCEECCCcccccccceEEcCCceec
Confidence 555554332 11 233445555554443 2455555543
|
Alternate name: dTDP-D-glucose synthase |
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.7e-07 Score=77.05 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=11.8
Q ss_pred ccCCceEEeCCeE-----EEcCCcEeCCCcc
Q 018109 334 RSAEGFYIRSGVT-----VILKNSVITDGFV 359 (360)
Q Consensus 334 ~~~~~~~i~~~~~-----~ig~~~~i~~g~~ 359 (360)
.|+++++|++|+. .||+++.||||+|
T Consensus 121 tIg~~V~IGagAkILG~I~IGd~akIGA~sV 151 (194)
T COG1045 121 TIGNGVYIGAGAKILGNIEIGDNAKIGAGSV 151 (194)
T ss_pred ccCCCeEECCCCEEEcceEECCCCEECCCce
Confidence 4444444444442 3344555555554
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.1e-07 Score=83.02 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=33.9
Q ss_pred eeEEecCeEECCCCEEec--------eEEECCcccchhHHHHhhhhCCCcceEECCCCeE-eeeEecCCCEECCCcEEec
Q 018109 255 HSVVGIRSRINANVHLKD--------TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI-KECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~i~~~~~ig~~~~~~~ 325 (360)
+++||++|.|..++.++. ..++|++ |.||.++.| .++.||++|.||+++++..
T Consensus 186 ~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~------------------V~IGagA~Ilggi~IGd~a~IGAgSVV~k 247 (294)
T PLN02694 186 TAVIGNNVSILHHVTLGGTGKACGDRHPKIGDG------------------VLIGAGATILGNVKIGEGAKIGAGSVVLI 247 (294)
T ss_pred CcEECCCCEEeecceeCCcccccCCCccEECCC------------------eEECCeeEECCCCEECCCCEECCCCEECC
Confidence 466777777766666653 3455554 667766666 3666777777777766664
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=85.67 Aligned_cols=61 Identities=25% Similarity=0.421 Sum_probs=50.3
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEEC
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 318 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig 318 (360)
++.|+++|. |.+|+||++|.|+ +.|.+++++.+ |.|+++|.|.+|+|+++|.|+
T Consensus 278 p~~i~~~~~-----i~~~~Ig~~~~i~--~~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~I~ 331 (369)
T TIGR02092 278 PTYYAENSK-----VENSLVANGCIIE--GKVENSILSRG-------------------VHVGKDALIKNCIIMQRTVIG 331 (369)
T ss_pred CcEEcCCCE-----EEEeEEcCCCEEe--eEEeCCEECCC-------------------CEECCCCEEEeeEEeCCCEEC
Confidence 345555544 4589999999997 46888877665 999999999999999999999
Q ss_pred CCcEEec
Q 018109 319 KNVIIAN 325 (360)
Q Consensus 319 ~~~~~~~ 325 (360)
+++.+.+
T Consensus 332 ~~~~i~~ 338 (369)
T TIGR02092 332 EGAHLEN 338 (369)
T ss_pred CCCEEEE
Confidence 9999977
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.7e-06 Score=71.91 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=11.4
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEe
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIA 324 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~ 324 (360)
+.||.++.+. ++.||+++.||+++.+.
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~ 126 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVL 126 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 4444444443 34444444444444443
|
|
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-06 Score=74.67 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=17.4
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 278 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~ 278 (360)
+.||+++.|.+. ..++|++++.|+++|.|.+++.++.
T Consensus 68 ~~Ig~~~~i~~~--~g~~Ig~~~~IG~~~~I~~~v~ig~ 104 (162)
T TIGR01172 68 ARIGRGVFIDHG--TGVVIGETAVIGDDVTIYHGVTLGG 104 (162)
T ss_pred CEECCCeEECCC--CeEEECCCCEECCCCEEcCCCEECC
Confidence 344445544421 1245555555555555555555553
|
Cysteine biosynthesis |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2e-06 Score=82.60 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=64.9
Q ss_pred ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEE
Q 018109 239 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARI 317 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~i 317 (360)
.....+.+.+. .+.+.+|.|+.+|.|.. .|.+|++.-+ ++|+++|.|.+|+|..+|.|
T Consensus 279 ~~~~~pPak~~~~s~v~nSLv~~GciI~G--~V~nSVL~~~-------------------v~I~~gs~i~~svim~~~~I 337 (393)
T COG0448 279 KNKNLPPAKFVNDSEVSNSLVAGGCIISG--TVENSVLFRG-------------------VRIGKGSVIENSVIMPDVEI 337 (393)
T ss_pred cCCCCCCceEecCceEeeeeeeCCeEEEe--EEEeeEEecC-------------------eEECCCCEEEeeEEeCCcEE
Confidence 34455666666 55677899999999998 8999988765 99999999999999999999
Q ss_pred CCCcEEecCCCcccccccCCceEEeCC
Q 018109 318 GKNVIIANSEGIQEADRSAEGFYIRSG 344 (360)
Q Consensus 318 g~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (360)
|.+|.+.+ +.+.++++|++|+.|+..
T Consensus 338 G~~~~l~~-aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 338 GEGAVLRR-AIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred CCCCEEEE-EEeCCCcEeCCCcEEcCC
Confidence 99999987 344445455555444433
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=81.98 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=19.3
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 278 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~ 278 (360)
+.||+++.|.+.. .++||+++.||.++.|...+.+|+
T Consensus 212 A~IG~Gv~IdHg~--GVVIG~~avIGdnv~I~~gVTIGg 248 (355)
T PLN02739 212 ARIGKGILLDHGT--GVVIGETAVIGDRVSILHGVTLGG 248 (355)
T ss_pred ccccCceEEecCC--ceEECCCCEECCCCEEcCCceeCC
Confidence 3445555554211 455666666666666655555554
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-06 Score=87.40 Aligned_cols=67 Identities=12% Similarity=0.263 Sum_probs=54.0
Q ss_pred eEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcc
Q 018109 251 SFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQ 330 (360)
Q Consensus 251 ~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~ 330 (360)
+.+.+|+||++|.| +++.|++|++..+ |.|+++|.|.+|+|+++|.||+++.+.+
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~----- 377 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRR----- 377 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEee-----
Confidence 34568999999999 7999998776554 9999999999999999999999999965
Q ss_pred cccccCCceEEeCC
Q 018109 331 EADRSAEGFYIRSG 344 (360)
Q Consensus 331 ~~~~~~~~~~i~~~ 344 (360)
++|++++.|+.+
T Consensus 378 --~ii~~~~~i~~~ 389 (425)
T PRK00725 378 --CVIDRGCVIPEG 389 (425)
T ss_pred --EEECCCCEECCC
Confidence 344444444444
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-06 Score=83.67 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=15.7
Q ss_pred eEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 309 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
++||++|.||+|++|.. ++.||+++.|+.|+++
T Consensus 258 p~IGd~V~IGagA~IlG------~V~IGd~aiIGAGSVV 290 (355)
T PLN02739 258 PKIGDGALLGACVTILG------NISIGAGAMVAAGSLV 290 (355)
T ss_pred cEECCCCEEcCCCEEeC------CeEECCCCEECCCCEE
Confidence 44444444444444433 3445555555555443
|
|
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-06 Score=74.48 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=12.3
Q ss_pred eeEEecCeEECCCCEEece
Q 018109 255 HSVVGIRSRINANVHLKDT 273 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~ 273 (360)
+++||++|.|++++.|+.+
T Consensus 87 ~~~IG~~~~I~~~v~ig~~ 105 (162)
T TIGR01172 87 TAVIGDDVTIYHGVTLGGT 105 (162)
T ss_pred CCEECCCCEEcCCCEECCC
Confidence 4666666666666666643
|
Cysteine biosynthesis |
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.6e-07 Score=79.08 Aligned_cols=165 Identities=10% Similarity=0.127 Sum_probs=100.1
Q ss_pred CCCcEEEeeCc-ccCCCCCCccc-----------------cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCH-H
Q 018109 4 LTGNSQVLAAT-QTPGEAGKRWF-----------------QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-M 64 (360)
Q Consensus 4 ~~g~~~i~~~~-~~~~~~~~~~~-----------------lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl-~ 64 (360)
+.|+.+++.+. |+.+|....++ .+|+.+|..|.+.+. +.|++++||+++...+ +
T Consensus 43 ~~gi~e~vvV~~g~~~~lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~~e 115 (239)
T COG1213 43 KAGITEFVVVTNGYRADLVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSILE 115 (239)
T ss_pred HcCCceEEEEeccchHHHHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhhc-------CcEEEEeCCEeecHHHHH
Confidence 57888888888 88887554331 377999999999886 6799999999998775 4
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEE
Q 018109 65 DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 144 (360)
Q Consensus 65 ~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIy 144 (360)
.+++ .+.. ++.+...+......-.....+++|++..+..+-.. ..-.+.|++
T Consensus 116 ~l~~----a~~~-~li~d~~~~~~~~~ea~kv~~e~G~i~~igK~l~e-----------------------~~~e~iGi~ 167 (239)
T COG1213 116 RLLE----APGE-GLIVDRRPRYVGVEEATKVKDEGGRIVEIGKDLTE-----------------------YDGEDIGIF 167 (239)
T ss_pred HHHh----CcCC-cEEEeccccccccCceeEEEecCCEEehhcCCccc-----------------------ccceeeeeE
Confidence 4443 3222 22222222211111122234478999888655432 235689999
Q ss_pred EEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEe-----CCceeecCCHHHHHHHHHHhhcC
Q 018109 145 LFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF-----NDYWEDIGTIRSFFEANLALTAH 207 (360)
Q Consensus 145 ifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~-----~g~w~digtp~~~~~a~~~~l~~ 207 (360)
.|++++|....+-.... ....+.++.....+.+-.. ...|+++.||+++.++.+.+...
T Consensus 168 ~l~~~i~~~~~~~~~e~----~~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~ 231 (239)
T COG1213 168 ILSDSIFEDTYELLVER----SEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPN 231 (239)
T ss_pred EechHHHHHHHHHHhhh----hhHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHHH
Confidence 99999887543221111 1111222222111111111 46899999999999999887654
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-06 Score=72.98 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=45.1
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEE
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARI 317 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~i 317 (360)
++.||+++.|.+. ..++|++++.||+++.|++.+.+|+... ..- +.+.||++|.|. ++.+..++.|
T Consensus 47 ~a~Ig~~~~I~~g--~~i~I~~~~~IGd~~~I~h~v~IG~~~~---------~~~--~~~~IGd~~~Ig~~~~I~~~v~I 113 (146)
T PRK10191 47 AATIGRRFTIHHG--YAVVINKNVVAGDDFTIRHGVTIGNRGA---------DNM--ACPHIGNGVELGANVIILGDITI 113 (146)
T ss_pred CCEECCCeEECCC--CeEEECCCcEECCCCEECCCCEECCCCc---------CCC--CCCEECCCcEEcCCCEEeCCCEE
Confidence 3556666666632 1355566666666666666556654200 000 115677777776 6777777777
Q ss_pred CCCcEEecCCCccc
Q 018109 318 GKNVIIANSEGIQE 331 (360)
Q Consensus 318 g~~~~~~~~~~~~~ 331 (360)
|+++.++.++.+.+
T Consensus 114 G~~~~Igags~V~~ 127 (146)
T PRK10191 114 GNNVTVGAGSVVLD 127 (146)
T ss_pred CCCCEECCCCEECC
Confidence 77777766554443
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-06 Score=83.04 Aligned_cols=54 Identities=30% Similarity=0.457 Sum_probs=50.7
Q ss_pred eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecC
Q 018109 255 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~ 326 (360)
..+||++|.|++++.|++.+++|++ |.|++++.|.+|+|.++|+|+.++.+.++
T Consensus 261 p~~ig~~~~i~~~~~i~~~~~ig~~------------------~~I~~~~~i~~Sii~~~~~i~~~~~i~~s 314 (358)
T COG1208 261 PVVIGPGAKIGPGALIGPYTVIGEG------------------VTIGNGVEIKNSIIMDNVVIGHGSYIGDS 314 (358)
T ss_pred CEEECCCCEECCCCEECCCcEECCC------------------CEECCCcEEEeeEEEcCCEECCCCEEeee
Confidence 7899999999999999999999986 99999999999999999999999999874
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.2e-06 Score=78.00 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=63.9
Q ss_pred cCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHh
Q 018109 214 YDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVAS 289 (360)
Q Consensus 214 ~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~ 289 (360)
+.+.+.+...++|.+++++ .++-+- ++.++++|-|. .+++. ..+||++|.|+.++.|.....=+
T Consensus 111 I~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~------------ 178 (271)
T COG2171 111 IVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPL------------ 178 (271)
T ss_pred ecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCC------------
Confidence 4567777888888888888 444442 78888888888 44443 46666666666666665422111
Q ss_pred hhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCccccc
Q 018109 290 LLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEAD 333 (360)
Q Consensus 290 ~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~ 333 (360)
+..|+.||+||.|+ +|.+..++.+|++|++..+..+....
T Consensus 179 ----~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~t 219 (271)
T COG2171 179 ----QANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDT 219 (271)
T ss_pred ----CCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCc
Confidence 22347777777775 66555555555555555554444443
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.2e-06 Score=66.79 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=39.9
Q ss_pred eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCe---EeeeEecCCCEECCCcEEecCCCccc
Q 018109 255 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK---IKECIIDKNARIGKNVIIANSEGIQE 331 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~---i~~~~i~~~~~ig~~~~~~~~~~~~~ 331 (360)
.++||+++.|++++.|... +.|++++. +..++||++|.|+.++.+...
T Consensus 22 ~~~ig~~~~Ig~~~~i~~~------------------------~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~----- 72 (101)
T cd03354 22 GIVIGETAVIGDNCTIYQG------------------------VTLGGKGKGGGKRHPTIGDNVVIGAGAKILGN----- 72 (101)
T ss_pred eEEECCCCEECCCCEEcCC------------------------CEECCCccCCcCCCCEECCCcEEcCCCEEECc-----
Confidence 3566666777776665333 55666664 567888888888888888653
Q ss_pred ccccCCceEEeCCeEE
Q 018109 332 ADRSAEGFYIRSGVTV 347 (360)
Q Consensus 332 ~~~~~~~~~i~~~~~~ 347 (360)
.+++++++|++++++
T Consensus 73 -~~Ig~~~~i~~~~~i 87 (101)
T cd03354 73 -ITIGDNVKIGANAVV 87 (101)
T ss_pred -CEECCCCEECCCCEE
Confidence 345555555555543
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.1e-06 Score=83.75 Aligned_cols=67 Identities=13% Similarity=0.356 Sum_probs=53.9
Q ss_pred EEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccc
Q 018109 252 FIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE 331 (360)
Q Consensus 252 ~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~ 331 (360)
.+.++.||++|.|+ ++.|+++++ |.+ |.|+++|.|.+|+|+++|+||+++.+.++
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svI-g~~------------------~~I~~~~~i~~sii~~~~~i~~~~~i~~~----- 366 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVL-SPN------------------VVVESGAEVEDSVLMDGVRIGRGAVVRRA----- 366 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEE-CCC------------------CEECCCCEEeeeEECCCCEECCCCEEEee-----
Confidence 35689999999998 999998655 554 99999999999999999999999999773
Q ss_pred ccccCCceEEeCCe
Q 018109 332 ADRSAEGFYIRSGV 345 (360)
Q Consensus 332 ~~~~~~~~~i~~~~ 345 (360)
++++++.|+.++
T Consensus 367 --ii~~~~~i~~~~ 378 (407)
T PRK00844 367 --ILDKNVVVPPGA 378 (407)
T ss_pred --EECCCCEECCCC
Confidence 444444444444
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-06 Score=82.02 Aligned_cols=69 Identities=30% Similarity=0.402 Sum_probs=46.6
Q ss_pred ceEECCCCEEcc---eEEe-eeEEecCeEECCCCEEece--------EEECCcccchhHHHHhhhhCCCcceEECCCCeE
Q 018109 239 DSIISHGSFITS---SFIE-HSVVGIRSRINANVHLKDT--------MMLGADFYETDAEVASLLAEGRVPVGIGENTKI 306 (360)
Q Consensus 239 ~~~i~~~~~i~~---~~i~-~~~ig~~~~i~~~~~i~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i 306 (360)
.+.||+|+.|.+ ++|. +++||++|.|..++.|+.. .++|++ +.||.|+.|
T Consensus 232 ~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~------------------V~IGagA~I 293 (360)
T PLN02357 232 GAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDG------------------VLIGAGTCI 293 (360)
T ss_pred CCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCC------------------eEECCceEE
Confidence 445566666662 3443 6889999999999988764 455554 677777666
Q ss_pred -eeeEecCCCEECCCcEEec
Q 018109 307 -KECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 307 -~~~~i~~~~~ig~~~~~~~ 325 (360)
+++.||+++.||+++++..
T Consensus 294 lggV~IGdga~IGAgSVV~~ 313 (360)
T PLN02357 294 LGNITIGEGAKIGAGSVVLK 313 (360)
T ss_pred ECCeEECCCCEECCCCEECc
Confidence 3677777777777776654
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.2e-06 Score=66.08 Aligned_cols=28 Identities=36% Similarity=0.583 Sum_probs=16.7
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEec
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~ 325 (360)
+.|+.++.+. .+.||++|.|++++.+.+
T Consensus 61 ~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~ 89 (101)
T cd03354 61 VVIGAGAKILGNITIGDNVKIGANAVVTK 89 (101)
T ss_pred cEEcCCCEEECcCEECCCCEECCCCEECc
Confidence 5566665554 366666666666666654
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.4e-06 Score=66.85 Aligned_cols=25 Identities=24% Similarity=0.435 Sum_probs=17.3
Q ss_pred eeEEecCeEECCCCEEec--eEEECCc
Q 018109 255 HSVVGIRSRINANVHLKD--TMMLGAD 279 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~--~~~~~~~ 279 (360)
+..||+++.|++++.|.. .+.+|++
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~ 29 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSD 29 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCC
Confidence 456788888888888763 4566654
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.6e-06 Score=65.13 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=9.5
Q ss_pred ceEECCCCEEc-ceEEe
Q 018109 239 DSIISHGSFIT-SSFIE 254 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~ 254 (360)
++.||++|.|+ ++.|.
T Consensus 21 ~v~IG~~~~Ig~~~~i~ 37 (109)
T cd04647 21 GITIGDNVLIGPNVTIY 37 (109)
T ss_pred ceEECCCCEECCCCEEE
Confidence 45666666666 44444
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-05 Score=70.19 Aligned_cols=78 Identities=28% Similarity=0.405 Sum_probs=46.3
Q ss_pred EECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhh--hhCCCcceEECCCCeE-eeeEecCCCEE
Q 018109 241 IISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL--LAEGRVPVGIGENTKI-KECIIDKNARI 317 (360)
Q Consensus 241 ~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ig~~~~i-~~~~i~~~~~i 317 (360)
.||++..|.++. ..+||+.+.||++|.|...+.+|..--+.- +|- +++| +.||.|++| ++-.||+|+.|
T Consensus 75 ~IG~g~fIdHg~--GvVIgeta~IGddv~I~~gVTLGgtg~~~g---~RhPtIg~~---V~IGagAkILG~I~IGd~akI 146 (194)
T COG1045 75 KIGRGLFIDHGT--GVVIGETAVIGDDVTIYHGVTLGGTGKESG---KRHPTIGNG---VYIGAGAKILGNIEIGDNAKI 146 (194)
T ss_pred eECCceEEcCCc--eEEEcceeEECCCeEEEcceEecCCCCcCC---CCCCccCCC---eEECCCCEEEcceEECCCCEE
Confidence 455555555322 456777777777777777777776311110 111 2222 777777776 47777888888
Q ss_pred CCCcEEecC
Q 018109 318 GKNVIIANS 326 (360)
Q Consensus 318 g~~~~~~~~ 326 (360)
|+|+++...
T Consensus 147 GA~sVVlkd 155 (194)
T COG1045 147 GAGSVVLKD 155 (194)
T ss_pred CCCceEccC
Confidence 888777653
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.8e-06 Score=73.23 Aligned_cols=9 Identities=11% Similarity=0.161 Sum_probs=5.9
Q ss_pred eEECCCCeE
Q 018109 298 VGIGENTKI 306 (360)
Q Consensus 298 ~~ig~~~~i 306 (360)
|.|+.+|.|
T Consensus 100 v~I~~~v~i 108 (183)
T PRK10092 100 CMLAPGVHI 108 (183)
T ss_pred CEECCCCEE
Confidence 666666666
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.3e-05 Score=67.20 Aligned_cols=103 Identities=20% Similarity=0.213 Sum_probs=65.8
Q ss_pred ceEECCCCEEc-ceEE---eeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecC
Q 018109 239 DSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK 313 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~ 313 (360)
+..+|..|.++ ++.+ .+.+||+++.+++++.|....+..+. ..+.. ....+..++.||++|+|+ +++|.+
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~-~~~~~----~~~~~~~~v~IG~~vwIG~~a~Ilp 141 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDF-VTANI----GALVGAGPVTIGEDVWIGAGAVILP 141 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCCh-hhccc----CCceecCCeEECCCeEEcCccEECC
Confidence 55777777777 5553 25678888888888888765444421 11110 002223358888888887 788888
Q ss_pred CCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 314 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
+++||.+++++..+.+.+. +.+++++.|.++++
T Consensus 142 GV~IG~gavigagsVVtkd--------vp~~~iv~G~Pa~v 174 (190)
T COG0110 142 GVTIGEGAVIGAGSVVTKD--------VPPYGIVAGNPARV 174 (190)
T ss_pred CEEECCCcEEeeCCEEeCc--------cCCCeEEeCCcceE
Confidence 8888888888887766653 33444555555543
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=97.86 E-value=5e-05 Score=64.25 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=15.5
Q ss_pred eEEecCeEECC-CCEEec-eEEECCc
Q 018109 256 SVVGIRSRINA-NVHLKD-TMMLGAD 279 (360)
Q Consensus 256 ~~ig~~~~i~~-~~~i~~-~~~~~~~ 279 (360)
..||+++.|++ ++.+.. .+.+|++
T Consensus 2 ~~iG~~s~i~~~~~~~~~~~i~IG~~ 27 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGGDKLSIGKF 27 (145)
T ss_pred EEEeCceeeCCCCceEeCCCeEECCC
Confidence 46788888888 455543 5566654
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.1e-05 Score=65.12 Aligned_cols=111 Identities=13% Similarity=0.194 Sum_probs=61.5
Q ss_pred CCCCCCcee-cCceee-ceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEec-------------eEEECCcccch
Q 018109 224 RRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD-------------TMMLGADFYET 283 (360)
Q Consensus 224 ~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~-------------~~~~~~~~~~~ 283 (360)
+.|.|.+++ ..+.|+ +..|+++|++. .+++. .-+||+++.|.+++.|.+ -+++|.+|+-.
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFe 88 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFE 88 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEE
Confidence 344454444 233333 78888888888 45542 578899999988888876 45555543211
Q ss_pred hHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEE
Q 018109 284 DAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYI 341 (360)
Q Consensus 284 ~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i 341 (360)
++|-.. ..++|++..|+ .|.+|++|.+.++|.++....+..+..+.++..+
T Consensus 89 ---Vgc~s~----A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~v 140 (190)
T KOG4042|consen 89 ---VGCKSS----AKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSV 140 (190)
T ss_pred ---eechhh----hhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceE
Confidence 111000 03456655555 4666666665555555555444444444444433
|
|
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00014 Score=77.96 Aligned_cols=196 Identities=19% Similarity=0.240 Sum_probs=117.9
Q ss_pred eEEEEcCceeeecC--HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCC--CceEEEEecCCccccccccccccc
Q 018109 49 DVLILSGDHLYRMD--YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE--GRVLSFSEKPKGKDLKAMAVDTTV 124 (360)
Q Consensus 49 ~fLVv~gD~i~~~d--l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~--g~V~~~~ekp~~~~~~~~~i~~~~ 124 (360)
..+|..||.+..++ +.+ -..++++......+.+-.++.|++..|.+ +++..+..||+.+.-..
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a------- 220 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGG------- 220 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHh-------
Confidence 79999999976665 222 12255555555544434578999988866 68889999998654110
Q ss_pred cccccccccccCceeeeeEEEEeHHHHHHHHHhhCC------CCcchhhcccccc----------cccCceEEEEe-CCc
Q 018109 125 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP------TANDFGSEIIPAS----------ANEQFLKAYLF-NDY 187 (360)
Q Consensus 125 ~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~------~~~~~~~~~l~~~----------i~~~~I~~~~~-~g~ 187 (360)
.......++|+|+|+|+.+....++..... ...++..|++..+ +.+.++...++ ++.
T Consensus 221 ------~~~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 221 ------LSKTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred ------hhcCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 111245789999999999988877654221 1234444555432 22456666776 478
Q ss_pred eeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceE-EeeeEEecCeEEC
Q 018109 188 WEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSF-IEHSVVGIRSRIN 265 (360)
Q Consensus 188 w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~-i~~~~ig~~~~i~ 265 (360)
|+.+||-..|+.....+.... .....+..+..-..| .+.+.++.++.++.++ +.. |++|.|+.+..|+
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~------~~~~~i~~~~~~~~~----~~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig 364 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLV------TDQRRIMHRKVKPHP----AMFVQNAVLSGKLTAENATLWIENSHVGEGWKLA 364 (974)
T ss_pred eEEecCcHHHhcCchhHHHHh------hhhhhhhccccCCCC----ceEEEeeEecCCcccCCCeEEEEeeEecCCeEEc
Confidence 999999998886433322211 000011111000111 1344577888888877 323 5677888888888
Q ss_pred CCCEEece
Q 018109 266 ANVHLKDT 273 (360)
Q Consensus 266 ~~~~i~~~ 273 (360)
.+++|...
T Consensus 365 ~~~Iisgv 372 (974)
T PRK13412 365 SRSIITGV 372 (974)
T ss_pred CCcEEecc
Confidence 87777654
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00012 Score=61.97 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=19.3
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCCCcc
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQ 330 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~ 330 (360)
+.||++|.|. +|+|..+++||++++++..+.+.
T Consensus 74 ~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~ 107 (145)
T cd03349 74 VIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVT 107 (145)
T ss_pred cEECCCCEECCCCEEeCCCEECCCCEECCCCEEc
Confidence 6666666665 56666666666666665554443
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.4e-05 Score=68.90 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=52.6
Q ss_pred ccCCCCceeccCCCCCCcee-------cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchh
Q 018109 213 FYDATKPIYTSRRNLPPSKI-------DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETD 284 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~-------~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~ 284 (360)
+|++++++++++.|+|++.| +++++.+++|-++|.|. ++++.+++||-+|.||..++++..=+...
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s------ 363 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPS------ 363 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccC------
Confidence 45666666666666655444 24455556666666666 56666666666666666655543211110
Q ss_pred HHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcc
Q 018109 285 AEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQ 330 (360)
Q Consensus 285 ~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~ 330 (360)
-+...+.-+++|.+|.+++-|.+.|+-.++
T Consensus 364 ----------------~~~~~~a~Tilga~v~v~dev~v~~s~vlp 393 (407)
T KOG1460|consen 364 ----------------PNLPFAALTILGADVSVEDEVIVLNSIVLP 393 (407)
T ss_pred ----------------CCCCcceeEEecccceecceeEEeeeeEec
Confidence 011112347777777777777777664433
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.8e-05 Score=64.95 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=11.0
Q ss_pred eeEEecCeEECCCCEE
Q 018109 255 HSVVGIRSRINANVHL 270 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i 270 (360)
+..+|+++.++.++.+
T Consensus 67 ~~~iG~~~~i~~~~~~ 82 (190)
T COG0110 67 NLTIGDLCFIGVNVVI 82 (190)
T ss_pred ceEECCeeEEcCCcEE
Confidence 5567777777777765
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.6e-05 Score=66.46 Aligned_cols=79 Identities=25% Similarity=0.425 Sum_probs=46.6
Q ss_pred CeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecC-CCccc-ccccCCc
Q 018109 261 RSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANS-EGIQE-ADRSAEG 338 (360)
Q Consensus 261 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~-~~~~~-~~~~~~~ 338 (360)
++.|.|.++|+..+.++.. -| +.||+-+ +||.+|.|.-++.++.. ...+. |=.|+||
T Consensus 148 gvdihpaa~ig~gilldha-------------tg---vvigeTA-----vvg~~vSilH~Vtlggtgk~~gdrhP~Igd~ 206 (269)
T KOG4750|consen 148 GVDIHPAAKIGKGILLDHA-------------TG---VVIGETA-----VVGDNVSILHPVTLGGTGKGSGDRHPKIGDN 206 (269)
T ss_pred cccccchhhcccceeeccc-------------cc---eeeccee-----EeccceeeecceeeccccccccccCCcccCC
Confidence 4567777777777777651 11 4455444 44444444444444432 12222 2278888
Q ss_pred eEEeCCeE-----EEcCCcEeCCCccC
Q 018109 339 FYIRSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 339 ~~i~~~~~-----~ig~~~~i~~g~~i 360 (360)
++||.|++ .||+|++|+||++|
T Consensus 207 vliGaGvtILgnV~IGegavIaAGsvV 233 (269)
T KOG4750|consen 207 VLIGAGVTILGNVTIGEGAVIAAGSVV 233 (269)
T ss_pred eEEccccEEeCCeeECCCcEEeccceE
Confidence 88887775 56788888888875
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00021 Score=75.36 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=54.2
Q ss_pred ceEECCCCEEcceEE---eeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCC
Q 018109 239 DSIISHGSFITSSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKN 314 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~ 314 (360)
.+.||++|.|.+..+ ...+||++|.|+++|.+....+-++.. .- ++++||+||.|+ +|+|.++
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~l-----------~~--g~i~IG~~~~IG~~s~I~~g 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGRL-----------HT--GPVTLGRDAFIGTRSTLDID 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCce-----------ee--cCcEECCCcEECCCCEEcCC
Confidence 567778887774333 256688888888888876532221100 00 127888888886 7888888
Q ss_pred CEECCCcEEecCCCccccccc
Q 018109 315 ARIGKNVIIANSEGIQEADRS 335 (360)
Q Consensus 315 ~~ig~~~~~~~~~~~~~~~~~ 335 (360)
++||++++++..+.+.++..+
T Consensus 179 ~~Igd~a~vgagS~V~~g~~v 199 (695)
T TIGR02353 179 TSIGDGAQLGHGSALQGGQSI 199 (695)
T ss_pred CEECCCCEECCCCEecCCccc
Confidence 888888888877666654333
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00018 Score=63.77 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=52.8
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEEC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 318 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig 318 (360)
+.||+|-.+.+++ ..+||+-..||.++.|.+.+-+|+.+.+.. ++- -.||+|++|+ .+.|-.++.||
T Consensus 155 a~ig~gilldhat--gvvigeTAvvg~~vSilH~Vtlggtgk~~g--------drh--P~Igd~vliGaGvtILgnV~IG 222 (269)
T KOG4750|consen 155 AKIGKGILLDHAT--GVVIGETAVVGDNVSILHPVTLGGTGKGSG--------DRH--PKIGDNVLIGAGVTILGNVTIG 222 (269)
T ss_pred hhcccceeecccc--ceeecceeEeccceeeecceeecccccccc--------ccC--CcccCCeEEccccEEeCCeeEC
Confidence 3556666666544 688999999999999999999987432221 111 2677777775 55566667777
Q ss_pred CCcEEecCCCccc
Q 018109 319 KNVIIANSEGIQE 331 (360)
Q Consensus 319 ~~~~~~~~~~~~~ 331 (360)
.|++++.++.+-+
T Consensus 223 egavIaAGsvV~k 235 (269)
T KOG4750|consen 223 EGAVIAAGSVVLK 235 (269)
T ss_pred CCcEEeccceEEe
Confidence 7777666554433
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0002 Score=67.12 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=31.7
Q ss_pred eEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCC
Q 018109 298 VGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 344 (360)
Q Consensus 298 ~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (360)
..++.+++|..+++|+++.||.++++-+.+.+++++.|.|.-++.++
T Consensus 306 ~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g 352 (371)
T KOG1322|consen 306 DYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYVNEG 352 (371)
T ss_pred ceechhHHHHhhhccccccccCceEEecccEeccceEEecccccccc
Confidence 55566666677788888888888877777666666666555444444
|
|
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0001 Score=61.19 Aligned_cols=103 Identities=9% Similarity=0.111 Sum_probs=65.0
Q ss_pred cCCCCceeccCCCCCCcee-cCceee----ceEECCCCEEc-ceEEee--------------eEEecCeEECCCCEEece
Q 018109 214 YDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIEH--------------SVVGIRSRINANVHLKDT 273 (360)
Q Consensus 214 ~~~~~~v~~~~~~~~~~~~-~~~~i~----~~~i~~~~~i~-~~~i~~--------------~~ig~~~~i~~~~~i~~~ 273 (360)
+..++.+..++.|.++|++ ..+++. +.+||+||.|. .++|.+ -+||.++.+.=+|... .
T Consensus 17 VCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~-A 95 (190)
T KOG4042|consen 17 VCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSS-A 95 (190)
T ss_pred EEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhh-h
Confidence 3344455556666666666 333332 56888888877 554422 4566666666665543 3
Q ss_pred EEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCccccccc
Q 018109 274 MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRS 335 (360)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~ 335 (360)
..+|++ ..|++.|+++ ++.+.++|.||+.|.+-....++++..+
T Consensus 96 ~kvGd~------------------NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~v 140 (190)
T KOG4042|consen 96 KKVGDR------------------NVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSV 140 (190)
T ss_pred hhhcCc------------------ceEeeeeEecCCcEEcCCceeccceEEecccccCCcceE
Confidence 455665 6677777776 5777788888888888777777776643
|
|
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0019 Score=58.04 Aligned_cols=139 Identities=18% Similarity=0.177 Sum_probs=86.2
Q ss_pred ccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCC-ce
Q 018109 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG-RV 103 (360)
Q Consensus 27 GTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g-~V 103 (360)
|+.++++++..+++.. ....+.++++.||. +....+.++++.|++.+++.++...+... ...++.. .+++| .+
T Consensus 79 ~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~ 154 (223)
T cd02513 79 SSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHR--FPWRALG-LDDNGLEP 154 (223)
T ss_pred CcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCc--CcHHhee-eccCCcee
Confidence 7889999999887520 00126899999999 44556899999998877787777766554 2223322 22233 22
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYL 183 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~ 183 (360)
..+.+.... .. ++.. .....++|+|+++++.|.+. . .+ -+.++..|.
T Consensus 155 ~~~~~~~~~-~~-------------q~~~--~~~~~n~~~y~~~~~~~~~~---~-----~~---------~g~~~~~~~ 201 (223)
T cd02513 155 VNYPEDKRT-RR-------------QDLP--PAYHENGAIYIAKREALLES---N-----SF---------FGGKTGPYE 201 (223)
T ss_pred ccCcccccC-Cc-------------CCCh--hHeeECCEEEEEEHHHHHhc---C-----Cc---------cCCCeEEEE
Confidence 222111100 00 0000 13567899999999977432 0 11 156777777
Q ss_pred eCC-ceeecCCHHHHHHHHH
Q 018109 184 FND-YWEDIGTIRSFFEANL 202 (360)
Q Consensus 184 ~~g-~w~digtp~~~~~a~~ 202 (360)
.+. .-.||.+++++..+..
T Consensus 202 ~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 202 MPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred eCccceeCCCCHHHHHHHHH
Confidence 754 6899999999988764
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00049 Score=72.57 Aligned_cols=75 Identities=16% Similarity=0.302 Sum_probs=41.9
Q ss_pred ceEECCCCEEcceEE-e--eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCC
Q 018109 239 DSIISHGSFITSSFI-E--HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKN 314 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i-~--~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~ 314 (360)
.+.||++|.|....+ + -+.||++|.|++++.|.....-+..| +.+ +++||++|.|+ +|+|..+
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~~------------~~~-~v~IG~~~~IG~~a~V~~g 663 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVM------------KSD-TVTIGDGATLGPGAIVLYG 663 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEecccccccc------------ccC-CeEECCCCEECCCCEECCC
Confidence 567777777774322 2 36788888888888886432211100 000 15556655554 4555555
Q ss_pred CEECCCcEEecC
Q 018109 315 ARIGKNVIIANS 326 (360)
Q Consensus 315 ~~ig~~~~~~~~ 326 (360)
++||+++.++..
T Consensus 664 ~~IGd~a~Ig~~ 675 (695)
T TIGR02353 664 VVMGEGSVLGPD 675 (695)
T ss_pred CEECCCCEECCC
Confidence 555555555544
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0063 Score=55.74 Aligned_cols=141 Identities=12% Similarity=0.174 Sum_probs=86.2
Q ss_pred CeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCC---CcccEEEECCCCceEEEEecCCccccccccccc
Q 018109 48 EDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRA---SDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDT 122 (360)
Q Consensus 48 ~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~---~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~ 122 (360)
+.++++.||. +.+.+ +.++++.+++...+++.+..+..++.. .+...+..|.+|+.+.|...+-....+.
T Consensus 89 d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~----- 163 (238)
T TIGR00466 89 ERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDF----- 163 (238)
T ss_pred CEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCc-----
Confidence 5788899999 66555 789999886666677777777654211 1122233466788777765532111000
Q ss_pred cccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchh--hcccccccccCceEEEEeCCc-eeecCCHHHH
Q 018109 123 TVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFG--SEIIPASANEQFLKAYLFNDY-WEDIGTIRSF 197 (360)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~--~~~l~~~i~~~~I~~~~~~g~-w~digtp~~~ 197 (360)
.+...+|+. ...+...|+|.|++++|.++..- .++..... -+.|+.+-.+.+|.....+.. -..++||+|+
T Consensus 164 ~~~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~-~~~~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 164 FAKRQTPVG---DNLLRHIGIYGYRAGFIEEYVAW-KPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ccccccccc---cceeEEEEEEeCCHHHHHHHHhC-CCCcccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 000112221 12567999999999999887433 33321111 245666656889999887655 4699999986
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0036 Score=56.13 Aligned_cols=136 Identities=17% Similarity=0.142 Sum_probs=84.8
Q ss_pred cHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEE
Q 018109 28 TADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 105 (360)
Q Consensus 28 Ta~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~ 105 (360)
..++++.+...+++ .+.++++.||. +.+.+ +..+++.+++.+ ++++..+.. +++...+++|.+..
T Consensus 77 ~~~sl~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~------~~v~~~~~~g~~~~ 143 (217)
T TIGR00453 77 RQDSVRNGLKALKD-----AEWVLVHDAARPFVPKELLDRLLEALRKAG--AAILALPVA------DTLKRVEADGFIVE 143 (217)
T ss_pred HHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhCC--cEEEeEecc------ceEEEEcCCCceee
Confidence 45778888877721 37899999999 55555 789999877643 344444443 33444555677777
Q ss_pred EEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccccc-ccCceEEEEe
Q 018109 106 FSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASA-NEQFLKAYLF 184 (360)
Q Consensus 106 ~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i-~~~~I~~~~~ 184 (360)
+.+... -...++ .|+|+.+.|..++.........+. +....+. .+.++..++.
T Consensus 144 ~~~r~~------------------------~~~~~~-p~~f~~~~l~~~~~~~~~~~~~~~-d~~~~~~~~g~~i~~~~~ 197 (217)
T TIGR00453 144 TVDREG------------------------LWAAQT-PQAFRTELLKKALARAKEEGFEIT-DDASAVEKLGGKVALVEG 197 (217)
T ss_pred cCChHH------------------------eEEEeC-CCcccHHHHHHHHHHHHhcCCCCC-cHHHHHHHcCCCeEEEec
Confidence 765321 123444 699999988877654211111111 1111111 1577888887
Q ss_pred CCceeecCCHHHHHHHHH
Q 018109 185 NDYWEDIGTIRSFFEANL 202 (360)
Q Consensus 185 ~g~w~digtp~~~~~a~~ 202 (360)
+..+++++||++|..+..
T Consensus 198 ~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 198 DALNFKITTPEDLALAEA 215 (217)
T ss_pred CccccccCCHHHHHHHHH
Confidence 777789999999988865
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0011 Score=41.78 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=4.5
Q ss_pred EecCeEECCCCE
Q 018109 258 VGIRSRINANVH 269 (360)
Q Consensus 258 ig~~~~i~~~~~ 269 (360)
||+++.|++++.
T Consensus 4 Ig~~~~i~~~~~ 15 (36)
T PF00132_consen 4 IGDNVIIGPNAV 15 (36)
T ss_dssp EETTEEEETTEE
T ss_pred EcCCCEECCCcE
Confidence 333333333333
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0062 Score=55.08 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=85.7
Q ss_pred ccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 27 GTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
+.+++++.+...+++ .+.++++.||. +.+.+ ++++++.+++.+ .+++..+..+ + +..+ +++|.+.
T Consensus 81 ~~~~sv~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~--~--~~~v--~~~g~~~ 147 (227)
T PRK00155 81 ERQDSVLNGLQALPD-----DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPVKD--T--IKRS--DDGGGIV 147 (227)
T ss_pred hHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEeccc--c--EEEE--cCCCcee
Confidence 358899999888743 36899999998 55554 799999887654 3344444433 1 2222 4456666
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccc---cc--ccCce
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPA---SA--NEQFL 179 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~---~i--~~~~I 179 (360)
++. .+.. -.... +.|+|+.+.|..++...... +.++++ ++ .+.++
T Consensus 148 ~~~---~r~~---------------------~~~~~-~p~~f~~~~l~~~~~~~~~~-----~~~~~d~~~~~~~~~~~i 197 (227)
T PRK00155 148 DTP---DRSG---------------------LWAAQ-TPQGFRIELLREALARALAE-----GKTITDDASAVERLGKPV 197 (227)
T ss_pred ecC---ChHH---------------------heeee-CCccchHHHHHHHHHHHHhc-----CCCcCcHHHHHHHcCCCe
Confidence 553 2111 11233 38999999888876543211 112222 22 24677
Q ss_pred EEEEeCCceeecCCHHHHHHHHHHhhc
Q 018109 180 KAYLFNDYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 180 ~~~~~~g~w~digtp~~~~~a~~~~l~ 206 (360)
..++.+..+++|+||++|..+...+.+
T Consensus 198 ~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 198 RLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHh
Confidence 777766678899999999999876543
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0035 Score=55.97 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=34.9
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEE
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARI 317 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~i 317 (360)
+.+||+++.+. -.++|+...+++++.|...++.++ ++|+.+|.+. |.+++.++-|
T Consensus 22 dViIG~nS~l~-----~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayi 77 (277)
T COG4801 22 DVIIGKNSMLK-----YGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYI 77 (277)
T ss_pred cEEEcccceee-----eeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEE
Confidence 55556555554 235555555555555555555543 5666666654 5555555555
Q ss_pred CCCcEEecC
Q 018109 318 GKNVIIANS 326 (360)
Q Consensus 318 g~~~~~~~~ 326 (360)
|.++.|...
T Consensus 78 GE~~sI~gk 86 (277)
T COG4801 78 GEFSSIKGK 86 (277)
T ss_pred eccceeeee
Confidence 555555443
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0055 Score=54.77 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=58.4
Q ss_pred ceeccCCCCCCceecCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcc
Q 018109 219 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVP 297 (360)
Q Consensus 219 ~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
.+..++.|++++.++ -.++++...++ ++.|...+++.+++|..+|.+..+++.+++
T Consensus 18 vv~gdViIG~nS~l~-----~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ 74 (277)
T COG4801 18 VVKGDVIIGKNSMLK-----YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------ 74 (277)
T ss_pred EEeccEEEcccceee-----eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------
Confidence 344555666666552 22333333333 344445677788888888888888888876
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecC
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~ 326 (360)
++||+.+.|+ ..++..+..||+.++|.++
T Consensus 75 ayiGE~~sI~gkl~v~gdLdig~dV~Iegg 104 (277)
T COG4801 75 AYIGEFSSIKGKLTVIGDLDIGADVIIEGG 104 (277)
T ss_pred eEEeccceeeeeEEEecccccccceEEecC
Confidence 8888888887 6788888888888888764
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0018 Score=53.38 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=18.6
Q ss_pred ceEECCCCEEc-ceEEe-------------eeEEecCeEECCCCEE
Q 018109 239 DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHL 270 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-------------~~~ig~~~~i~~~~~i 270 (360)
++.+|..|++. .++|+ ...||+++.|++.|.+
T Consensus 54 nVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVV 99 (184)
T KOG3121|consen 54 NVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVV 99 (184)
T ss_pred cceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEe
Confidence 56667777666 44442 2456666666666654
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0018 Score=40.73 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=20.1
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEe
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK 271 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~ 271 (360)
++.|+++|.|+ ++.|. ++.||+++.|++++.|+
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 35677777777 44443 56666777666666654
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.014 Score=52.15 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=84.7
Q ss_pred ccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 27 GTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
+..++++.+...+++ ...+.++++.||. +.+.+ ++++++.+++.++ .+...+..+ +....|++|.+.
T Consensus 79 ~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~~~------~~~~~~~~g~~~ 147 (218)
T cd02516 79 TRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPVTD------TIKRVDDDGVVV 147 (218)
T ss_pred HHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEeccc------cEEEecCCCcee
Confidence 457889999988741 1147899999998 55555 7999998876553 333344332 122356678888
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccc---cc--cCce
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPAS---AN--EQFL 179 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~---i~--~~~I 179 (360)
++.+..+ -..+.+. ++|+.+.|..++...... +.++++. ++ +.++
T Consensus 148 ~~~~r~~------------------------~~~~~~P-~~f~~~~~~~~~~~~~~~-----~~~~td~~~~~~~~~~~v 197 (218)
T cd02516 148 ETLDREK------------------------LWAAQTP-QAFRLDLLLKAHRQASEE-----GEEFTDDASLVEAAGGKV 197 (218)
T ss_pred ecCChHH------------------------hhhhcCC-CcccHHHHHHHHHHHHhc-----CCCcCcHHHHHHHcCCCe
Confidence 8775321 2356677 999999998887553211 2233332 22 3567
Q ss_pred EEEEeCCceeecCCHHHHHH
Q 018109 180 KAYLFNDYWEDIGTIRSFFE 199 (360)
Q Consensus 180 ~~~~~~g~w~digtp~~~~~ 199 (360)
..++-+..-+||.||++|..
T Consensus 198 ~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 198 ALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred EEEecCcccccCCCHHHHhh
Confidence 77776556679999999853
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0072 Score=37.70 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=4.9
Q ss_pred EEecCeEECCCCEE
Q 018109 257 VVGIRSRINANVHL 270 (360)
Q Consensus 257 ~ig~~~~i~~~~~i 270 (360)
.||++|.|++++.+
T Consensus 3 ~IG~~~~ig~~~~i 16 (34)
T PF14602_consen 3 TIGDNCFIGANSTI 16 (34)
T ss_dssp EE-TTEEE-TT-EE
T ss_pred EECCCEEECccccc
Confidence 34444444444444
|
... |
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.15 Score=46.16 Aligned_cols=142 Identities=15% Similarity=0.140 Sum_probs=90.7
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~-~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
.|+.++++++...+++. ...+.++++.+|. +.+ .++.++++.+++.+++.++.+.+.... + .+. ...+++|++
T Consensus 76 ~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~-~-~~~-~~~~~~g~~ 150 (222)
T TIGR03584 76 TGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFP-I-QRA-FKLKENGGV 150 (222)
T ss_pred CCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCC-h-HHh-eEECCCCcE
Confidence 58899999999887420 1136799999999 444 458999999988778877777665431 1 122 344456776
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYL 183 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~ 183 (360)
..+.........+. + ...+..++.+|+++++.|.. .. .+ + +.++..|.
T Consensus 151 ~~~~~~~~~~~rQd--~-------------~~~y~~nga~y~~~~~~~~~---~~-----~~----~-----~~~~~~~~ 198 (222)
T TIGR03584 151 EMFFPEHFNTRSQD--L-------------EEAYHDAGQFYWGKSQAWLE---SG-----PI----F-----SPHSIPIV 198 (222)
T ss_pred EecCCCcccCCCCC--C-------------chheeeCCeEEEEEHHHHHh---cC-----Cc----c-----CCCcEEEE
Confidence 65542211000000 0 01356799999999997732 21 11 1 45677887
Q ss_pred eC-CceeecCCHHHHHHHHHHh
Q 018109 184 FN-DYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 184 ~~-g~w~digtp~~~~~a~~~~ 204 (360)
.+ ..-.||.+++++..|...+
T Consensus 199 m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 199 LPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred eCccceeCCCCHHHHHHHHHHH
Confidence 75 4689999999998886543
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.077 Score=52.02 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=81.6
Q ss_pred ccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 27 GTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
+..++++.+...++ .+.+++..||. +.+.+ ++.+++..++. +.++...++.+ +..|+...+| .+++.
T Consensus 82 ~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~D--tik~~~~tld-R~~l~ 150 (378)
T PRK09382 82 TRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVAD--TLKRANETVD-REGLK 150 (378)
T ss_pred hHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEecc--CcEEeeeEcC-cccEE
Confidence 35778999988885 26789999986 55555 68888876543 46777788777 5667655554 34554
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccccc-ccCceEEEE
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASA-NEQFLKAYL 183 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i-~~~~I~~~~ 183 (360)
.+ +.|+... .+.+....+. ...+ .|..+.+. .+.+|..++
T Consensus 151 ~~-QTPQ~f~---------------------------------~~~l~~a~~~----~~~~-TDd~sl~~~~G~~V~~v~ 191 (378)
T PRK09382 151 LI-QTPQLSR---------------------------------TKTLKAAADG----RGDF-TDDSSAAEAAGGKVALVE 191 (378)
T ss_pred EE-ECCCCCC---------------------------------HHHHHHHHhC----CCCc-ccHHHHHHHcCCcEEEEE
Confidence 44 6665322 1112111111 1111 11122221 267888888
Q ss_pred eCCceeecCCHHHHHHHHHHhhc
Q 018109 184 FNDYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 184 ~~g~w~digtp~~~~~a~~~~l~ 206 (360)
-+..|+++++|+|+..++..+..
T Consensus 192 g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 192 GSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCCcccCCCCHHHHHHHHHHhcc
Confidence 88899999999999999876643
|
|
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.17 Score=45.43 Aligned_cols=163 Identities=17% Similarity=0.222 Sum_probs=104.3
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCC-C-Cccc-EEEECC
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSR-A-SDFG-LMKINN 99 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~-~-~~~g-~v~~d~ 99 (360)
.-|| +.+..+..++.- ..++-++=+-||. +.... +.++++..++.+++|+-+..+..+++ . ...- -+..|+
T Consensus 74 ~SGT-dR~~Ev~~~l~~---~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~ 149 (247)
T COG1212 74 QSGT-DRLAEVVEKLGL---PDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDK 149 (247)
T ss_pred CCcc-HHHHHHHHhcCC---CcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcC
Confidence 3466 446666666642 1245666678998 55544 68888888888777766666665431 1 1111 244688
Q ss_pred CCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchh--hcccccccccC
Q 018109 100 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFG--SEIIPASANEQ 177 (360)
Q Consensus 100 ~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~--~~~l~~~i~~~ 177 (360)
+|+-+.|.-.|-....+. . +. ...|.-.|+|.|++++|.++..-. +..-+.. -+.|+-+-.+.
T Consensus 150 ~g~ALYFSRs~iP~~rd~-~------~~-------~p~l~HIGIYayr~~~L~~f~~~~-ps~LE~~E~LEQLR~Le~G~ 214 (247)
T COG1212 150 EGYALYFSRAPIPYGRDN-F------GG-------TPFLRHIGIYAYRAGFLERFVALK-PSPLEKIESLEQLRVLENGE 214 (247)
T ss_pred CCcEEEEEcCCCCCcccc-c------CC-------cchhheeehHHhHHHHHHHHHhcC-CchhHHHHHHHHHHHHHcCC
Confidence 899999987775433111 0 00 145778999999999998875432 3211111 24556555688
Q ss_pred ceEEEEeCCce-eecCCHHHHHHHHHHhhc
Q 018109 178 FLKAYLFNDYW-EDIGTIRSFFEANLALTA 206 (360)
Q Consensus 178 ~I~~~~~~g~w-~digtp~~~~~a~~~~l~ 206 (360)
+|.....+..- .-+.||+||.++.+.+..
T Consensus 215 kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 215 KIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred eeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 99998887555 899999999999877653
|
|
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.015 Score=36.24 Aligned_cols=14 Identities=43% Similarity=0.513 Sum_probs=4.7
Q ss_pred EecCCCEECCCcEE
Q 018109 310 IIDKNARIGKNVII 323 (360)
Q Consensus 310 ~i~~~~~ig~~~~~ 323 (360)
.||++|.||+++.+
T Consensus 3 ~IG~~~~ig~~~~i 16 (34)
T PF14602_consen 3 TIGDNCFIGANSTI 16 (34)
T ss_dssp EE-TTEEE-TT-EE
T ss_pred EECCCEEECccccc
Confidence 34444444444443
|
... |
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.2 Score=45.29 Aligned_cols=138 Identities=14% Similarity=0.068 Sum_probs=81.3
Q ss_pred HHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEE
Q 018109 29 ADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSF 106 (360)
Q Consensus 29 a~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~ 106 (360)
.++++.+...+++ .+.++++.||. +.+.+ +.++++.+++.++. +...++.+ .+....++.+...
T Consensus 85 ~~sv~~gl~~~~~-----~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~~~d-------ti~~~~~~~~~~~ 150 (230)
T PRK13385 85 QESVAAGLDRIGN-----EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVEVKD-------TVKRVKDKQVIET 150 (230)
T ss_pred HHHHHHHHHhccC-----CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEeccc-------eEEEEcCCeeEec
Confidence 3888888887753 35678889999 66666 68999988776543 33333322 1222123544333
Q ss_pred EecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccccc-ccCceEEEEeC
Q 018109 107 SEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASA-NEQFLKAYLFN 185 (360)
Q Consensus 107 ~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i-~~~~I~~~~~~ 185 (360)
.+ +. ..+..-+.|.|+.+.|.+..+........+ .+....+. .+.+|..++-+
T Consensus 151 i~---r~----------------------~~~~~qtpq~f~~~~l~~~~~~~~~~~~~~-td~~~~~~~~g~~v~~v~~~ 204 (230)
T PRK13385 151 VD---RN----------------------ELWQGQTPQAFELKILQKAHRLASEQQFLG-TDEASLVERSPHPVKLVQGS 204 (230)
T ss_pred cC---HH----------------------HHhhhcCCceeeHHHHHHHHHHHHhcCCCc-CcHHHHHHHcCCCEEEEECC
Confidence 22 11 112233588999888877654321111111 11111111 25778888877
Q ss_pred CceeecCCHHHHHHHHHHhhc
Q 018109 186 DYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 186 g~w~digtp~~~~~a~~~~l~ 206 (360)
...+.|.||+++..+...+.+
T Consensus 205 ~~n~kItt~eDl~~a~~~l~~ 225 (230)
T PRK13385 205 YYNIKLTTPEDMPLAKAILQG 225 (230)
T ss_pred cccCcCCCHHHHHHHHHHHhh
Confidence 788999999999999766643
|
|
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=91.90 E-value=1.4 Score=38.59 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=32.0
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHc
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQS 73 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~ 73 (360)
.|+.++++.+....+ .+.++++.||. +.+.+ +..+++.+++.
T Consensus 74 ~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 117 (193)
T PRK00317 74 PGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAGKD 117 (193)
T ss_pred CCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence 688899999887654 37899999999 65655 67888765443
|
|
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.37 Score=40.62 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=41.4
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEe
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 82 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~ 82 (360)
-.|++++|+.+...+.. .++|++++||. +.+.+ +.++++.+++.++++++...
T Consensus 69 ~~G~~~sl~~a~~~~~~-----~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 69 GQGPLASLLAALSQLPS-----SEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp SCSHHHHHHHHHHTSTT-----SSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred cCChHHHHHHHHHhccc-----CCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 47999999999998832 48999999999 44444 79999999887777665443
|
... |
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=90.33 E-value=10 Score=38.28 Aligned_cols=232 Identities=14% Similarity=0.094 Sum_probs=117.0
Q ss_pred CCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCC--ceEEEEecCCccccccccccccc
Q 018109 47 IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG--RVLSFSEKPKGKDLKAMAVDTTV 124 (360)
Q Consensus 47 ~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g--~V~~~~ekp~~~~~~~~~i~~~~ 124 (360)
-+.+.|.+.|.+...-=-.++.+|.+++++++|=+.+-..+. .+-|.+.. .+| +|+++.+-|+...... +
T Consensus 213 ~eyifv~nvDNLga~vDp~~lg~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~-~dgk~~lvEysqvp~e~~~~f---~--- 284 (469)
T PLN02474 213 KEYVFIANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLAD-VKGGTLIS-YEGKVQLLEIAQVPDEHVNEF---K--- 284 (469)
T ss_pred CEEEEEEecCccccccCHHHHHHHHhcCCceEEEEeecCCCC-CCccEEEE-ECCEEEEEEEecCCHHHHHhh---c---
Confidence 479999999997433224678888889988877555433221 23465543 355 5777777665432100 0
Q ss_pred cccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcch-------hhcccc------ccccc-CceEEEEe-CCcee
Q 018109 125 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF-------GSEIIP------ASANE-QFLKAYLF-NDYWE 189 (360)
Q Consensus 125 ~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~-------~~~~l~------~~i~~-~~I~~~~~-~g~w~ 189 (360)
. ...-.+.+++.++|+-+.+.++++.......-. ...+++ ++++- .+..++.+ ...+.
T Consensus 285 -----~--~~kf~~fNtnn~w~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~ 357 (469)
T PLN02474 285 -----S--IEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFL 357 (469)
T ss_pred -----c--cccceeeeeeeEEEEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhcc
Confidence 0 012467899999999999988765321100000 000111 11110 12223332 13466
Q ss_pred ecCCHHHHHHHHHHhhcCCCCCCccCCCC-ceecc--CCCCCCce-ecCceeeceEE-CCCCEEcceEEeeeEEecCeEE
Q 018109 190 DIGTIRSFFEANLALTAHPPMFSFYDATK-PIYTS--RRNLPPSK-IDDSKIVDSII-SHGSFITSSFIEHSVVGIRSRI 264 (360)
Q Consensus 190 digtp~~~~~a~~~~l~~~~~~~~~~~~~-~v~~~--~~~~~~~~-~~~~~i~~~~i-~~~~~i~~~~i~~~~ig~~~~i 264 (360)
-+-+..+++.+..++.......- ....+ ..... ..++|... +.. . ...+ +-...+. ..+-+|-.++.+
T Consensus 358 PVK~~~dll~~rsdly~l~~~~l-~~~~~~~~~~~p~IeL~~~f~~v~~--f-~~rf~~iPsl~~---~d~LtV~Gdv~f 430 (469)
T PLN02474 358 PVKATSDLLLVQSDLYTLVDGFV-IRNKARTNPSNPSIELGPEFKKVAN--F-LSRFKSIPSIVE---LDSLKVSGDVWF 430 (469)
T ss_pred CCCCCCCHHHHHHHHHHhccCeE-EecCcccCCCCCcEEECcccccHHh--H-HHhcCCCCCccc---CCeEEEeeeeEE
Confidence 67777777777766544321100 00011 01111 11222110 000 0 0000 1111111 114455567888
Q ss_pred CCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCC
Q 018109 265 NANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKN 314 (360)
Q Consensus 265 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~ 314 (360)
|.++++...|++-++ +|.+..|-+|+.+++++|..+
T Consensus 431 G~~v~l~G~v~i~~~--------------~~~~~~ip~g~~l~~~~~~~~ 466 (469)
T PLN02474 431 GSGIVLKGKVTITAK--------------SGVKLEIPDGAVLENKDINGP 466 (469)
T ss_pred CCCcEEEEEEEEEcC--------------CCCeeecCCCcEecceeeccc
Confidence 888888888888763 223367888888877776554
|
|
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=87.04 E-value=5 Score=35.35 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=32.4
Q ss_pred EEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEe--CCceeecCCHHHHHHHHHHh
Q 018109 143 VYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF--NDYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 143 Iyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~--~g~w~digtp~~~~~a~~~~ 204 (360)
..+|+++.+..+.+...... .-+..+++..++...++ ++.|.|++||++|.++.+.+
T Consensus 133 ~al~~~~~~~~l~~~l~~~~-----~~~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~~~ 191 (196)
T PRK00560 133 ISLWHQSLLNALIYALKTQN-----YRLSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQIL 191 (196)
T ss_pred EEEEcHHHHHHHHHHHHhCC-----ccHHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHHHH
Confidence 36788888876532211111 11233333334444443 35689999999998876544
|
|
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=87.03 E-value=0.63 Score=40.75 Aligned_cols=71 Identities=14% Similarity=-0.016 Sum_probs=45.5
Q ss_pred CCcEEEeeCcccCCCCCC------------ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHH
Q 018109 5 TGNSQVLAATQTPGEAGK------------RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNH 70 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~~------------~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h 70 (360)
.++++++++.++..+..+ .+-.|...++..+...+.. +++|++++||. +....+..+++.|
T Consensus 40 ~~i~~I~Vv~~~~~~~~~~~l~~~~~~~~~~~g~G~~~~l~~al~~~~~-----~~~~lv~~~D~P~i~~~~i~~li~~~ 114 (183)
T TIGR00454 40 SKVNNIIIATSPHTPKTEEYINSAYKDYKNASGKGYIEDLNECIGELYF-----SEPFLVVSSDLINLRSKIIDSIVDYY 114 (183)
T ss_pred CCCCEEEEEeCCCHHHHHHHHhhcCcEEEecCCCCHHHHHHHHhhcccC-----CCCEEEEeCCcCcCCHHHHHHHHHHH
Confidence 356777777664322111 1224777788888765432 47999999998 3455589999988
Q ss_pred HHcCCcEEEE
Q 018109 71 RQSGADITIS 80 (360)
Q Consensus 71 ~~~~a~~tll 80 (360)
.+.+.....+
T Consensus 115 ~~~~~~~~~~ 124 (183)
T TIGR00454 115 YCIKAPALAV 124 (183)
T ss_pred HhcCCCceEE
Confidence 7766544333
|
At this time this gene appears to be present only in Archea |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=86.71 E-value=1.4 Score=43.76 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=38.5
Q ss_pred cCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCc
Q 018109 260 IRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGI 329 (360)
Q Consensus 260 ~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~ 329 (360)
..+.+.+.+.|-++++-++ +.+|+++.|.+|+++.++.||.+|+|.+....
T Consensus 272 ~~~~~~~~~~VinSil~~~-------------------~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~ 322 (414)
T PF07959_consen 272 TPSDSEASSCVINSILEGG-------------------VSVGPGSVIEHSHLGGPWSIGSNCIISGVDIN 322 (414)
T ss_pred cccccCCCeeEEEeEecCC-------------------ceECCCCEEEeeecCCCCEECCCCEEECCccc
Confidence 3456677777777777665 78888888888888888888888888776443
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=82.58 E-value=2.5 Score=36.14 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=35.8
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCc
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGAD 76 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~-~~dl~~ll~~h~~~~a~ 76 (360)
..|++++++.+..++.. ..+.++++.||+ +. ...++.+++.+.+.++.
T Consensus 73 ~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 73 EEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred hhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 36999999999988852 137899999998 44 44478888887654443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=81.91 E-value=2.4 Score=36.59 Aligned_cols=47 Identities=19% Similarity=0.107 Sum_probs=36.1
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCc
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 76 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~ 76 (360)
+..|++++|+.+...++ .+.++++.||. +.+.+ ++.+++.+.+.++.
T Consensus 71 ~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 71 DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 45799999999998885 37899999998 66666 57787776544443
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=80.80 E-value=14 Score=33.21 Aligned_cols=139 Identities=19% Similarity=0.194 Sum_probs=86.0
Q ss_pred HHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEE
Q 018109 30 DAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 107 (360)
Q Consensus 30 ~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ 107 (360)
+++.++.+.++. ..+..+++.+=. +...++++.++.|.+.+.+-.+.+.+.+.. .|--+.. .+|.+..+.
T Consensus 84 ~~~lh~le~~~~----~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~---p~k~f~~-~~~~~~~~~ 155 (228)
T COG1083 84 DAALHALESFNI----DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHH---PYKAFSL-NNGEVKPVN 155 (228)
T ss_pred HHHHHHHHHhcc----ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecccc---hHHHHHh-cCCceeecc
Confidence 455666666653 233356665554 566779999999999888877777776642 2322222 347888888
Q ss_pred ecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEe-CC
Q 018109 108 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF-ND 186 (360)
Q Consensus 108 ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~-~g 186 (360)
|.|+.... ...+. ..+..++.+|+++.+.|.+ +. .+ +. .....|.+ +.
T Consensus 156 ~~~~~~~r-rQ~Lp-------------k~Y~~NgaiYi~~~~~l~e---~~-----~~---f~------~~~~~y~m~~~ 204 (228)
T COG1083 156 EDPDFETR-RQDLP-------------KAYRENGAIYINKKDALLE---ND-----CF---FI------PNTILYEMPED 204 (228)
T ss_pred cCCccccc-cccch-------------hhhhhcCcEEEehHHHHhh---cC-----ce---ec------CCceEEEcCcc
Confidence 77754321 11111 2356688999999998743 21 11 11 13344544 34
Q ss_pred ceeecCCHHHHHHHHHHhhcC
Q 018109 187 YWEDIGTIRSFFEANLALTAH 207 (360)
Q Consensus 187 ~w~digtp~~~~~a~~~~l~~ 207 (360)
...||.+..++..++..+..+
T Consensus 205 ~~~DID~~~Dl~iae~l~~~~ 225 (228)
T COG1083 205 ESIDIDTELDLEIAENLIFLK 225 (228)
T ss_pred cccccccHHhHHHHHHHhhhh
Confidence 689999999999988776543
|
|
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.60 E-value=12 Score=33.20 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=48.8
Q ss_pred CCCcEEEeeCcccC-CC--------------CCCccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHH
Q 018109 4 LTGNSQVLAATQTP-GE--------------AGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDF 66 (360)
Q Consensus 4 ~~g~~~i~~~~~~~-~~--------------~~~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~l 66 (360)
++++++++.+.+|. .+ ...+|-.|-+.+++.+...... ..+-.+++.||. +...++..+
T Consensus 43 ~a~~~~vivV~g~~~~~~~~a~~~~~~~~~v~npd~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl 118 (199)
T COG2068 43 SAGLDRVIVVTGHRVAEAVEALLAQLGVTVVVNPDYAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRL 118 (199)
T ss_pred hcCCCeEEEEeCcchhhHHHhhhccCCeEEEeCcchhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHH
Confidence 46788888888884 11 1123457999999999988874 124899999999 556668899
Q ss_pred HHHHHHc
Q 018109 67 VQNHRQS 73 (360)
Q Consensus 67 l~~h~~~ 73 (360)
++.+++.
T Consensus 119 ~~~~~~~ 125 (199)
T COG2068 119 IAAFRAR 125 (199)
T ss_pred HHhcccc
Confidence 9887776
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 360 | ||||
| 1yp2_A | 451 | Crystal Structure Of Potato Tuber Adp-Glucose Pyrop | 1e-108 | ||
| 3brk_X | 420 | Crystal Structure Of Adp-Glucose Pyrophosphorylase | 7e-26 |
| >pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose Pyrophosphorylase Length = 451 | Back alignment and structure |
|
| >pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From Agrobacterium Tumefaciens Length = 420 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 516 bits (1332), Expect = 0.0
Identities = 190/353 (53%), Positives = 262/353 (74%), Gaps = 7/353 (1%)
Query: 10 VLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN 69
VLAA Q+P WFQGTADAVRQ+ WLFE+ + + LIL+GDHLYRMDY F+Q
Sbjct: 104 VLAAQQSPE--NPDWFQGTADAVRQYLWLFEEHT---VLEYLILAGDHLYRMDYEKFIQA 158
Query: 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSK 129
HR++ ADIT++ LPMD+ RA+ FGLMKI+ EGR++ F+EKP+G+ L+AM VDTT+LGL
Sbjct: 159 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDD 218
Query: 130 QEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQF-LKAYLFNDYW 188
+ A+E P+IASMG+Y+ K+++LNLLR +FP ANDFGSE+IP + + ++AYL++ YW
Sbjct: 219 KRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYW 278
Query: 189 EDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSF 247
EDIGTI +F+ ANL +T P P FSFYD + PIYT R LPPSK+ D+ + DS+I G
Sbjct: 279 EDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCV 338
Query: 248 ITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 307
I + I HSVVG+RS I+ ++D++++GAD+YETDA+ L A+G VP+GIG+N IK
Sbjct: 339 IKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIK 398
Query: 308 ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360
IIDKNARIG NV I N + +QEA R +G++I+SG+ ++K+++I G +I
Sbjct: 399 RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 397 bits (1022), Expect = e-138
Identities = 102/366 (27%), Positives = 168/366 (45%), Gaps = 64/366 (17%)
Query: 10 VLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN 69
+L A+Q E +W++GTADAV Q + E E ++IL+GDH+Y+MDY +Q
Sbjct: 94 ILPASQRVSE--TQWYEGTADAVYQNIDIIEPYA---PEYMVILAGDHIYKMDYEYMLQQ 148
Query: 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSK 129
H SGAD+TI CL + A+ FG+M +N + ++ F EKP D +
Sbjct: 149 HVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIEKP--ADPPGI----------- 195
Query: 130 QEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASANEQFLKAYLFND 186
E +ASMG+Y+F + L+ +R ++ DFG +IIP A+ F D
Sbjct: 196 -PGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFAD 254
Query: 187 -----------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDS 235
YW D+GTI ++++AN+ LT P YD + PI+T PP+K
Sbjct: 255 SCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHD 314
Query: 236 ------KIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVAS 289
V S++S I+ + + S++ R N+ L++ ++L +
Sbjct: 315 DEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS----------- 363
Query: 290 LLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYI-RSGVTVI 348
V IG + ++ +ID I + +I+ E D + F SG+ +I
Sbjct: 364 --------VKIGRHAQLSNVVIDHGVVIPEGLIVGEDP---ELDA--KRFRRTESGICLI 410
Query: 349 LKNSVI 354
++ +
Sbjct: 411 TQSMID 416
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 6e-13
Identities = 22/176 (12%), Positives = 44/176 (25%), Gaps = 42/176 (23%)
Query: 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 86
G ++ ED ++ GDH+Y F++ + I
Sbjct: 95 GNGYSLLVAKNHVEDR-------FILTMGDHVYSQQ---FIEKAVRGEGVIAD--REPRF 142
Query: 87 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 146
+ +++ + GRV + + D G ++
Sbjct: 143 VDIGEATKIRVED-GRVAKIGKDLREFDC-----------------------VDTGFFVL 178
Query: 147 KKEILLNLLRWRFPTANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN 201
I D + + Y+ + W D+ T AN
Sbjct: 179 DDSIF-EHA----EKLRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRAN 229
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 57/354 (16%), Positives = 113/354 (31%), Gaps = 93/354 (26%)
Query: 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY--RMDYMDFVQNHRQSGADITISCLPM 84
GT A+ K ++ LI+ GD + + + + I + +
Sbjct: 79 GTGAAILS---------AKFNDEALIIYGDLFFSNEKEICNIITLKEN-----AIIGVKV 124
Query: 85 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 144
+ D+G++ ++N+ + EKP + + + G+Y
Sbjct: 125 SN--PKDYGVLVLDNQNNLSKIIEKP----------EIP-------PSNL----INAGIY 161
Query: 145 LFKKEILLNLLRWRFPTANDFGSEIIPA-SANEQF----------------LKAYLFNDY 187
+I + S +E+ +K + Y
Sbjct: 162 KLNSDIF----------------TYLDKISISERGELELTDAINLMAKDHRVKVIEYEGY 205
Query: 188 WEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSF 247
W DIG + + N +FS + + + I++ D+ I G++
Sbjct: 206 WMDIGKPWNIIDVN-KWALDNLVFSQNLGN--VEDNVKIKGKVIIEE----DAEIKSGTY 258
Query: 248 ITSSFIEHSVVGIRSRINANVHLKDTMMLGADFY-ETDAEV-ASLLAEGRVPVGIGENTK 305
I +G S I N +L+ +L EV S++ EG I +
Sbjct: 259 IEGP----VYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEG---SKIPHLSY 311
Query: 306 IKECIIDKNARIGKNVIIAN-SEGIQEADRSAEGFYIRSGV----TVILKNSVI 354
+ + +I ++ G +IAN +E + +G I SG I +
Sbjct: 312 VGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRT 365
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 10/166 (6%), Positives = 48/166 (28%), Gaps = 40/166 (24%)
Query: 43 RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 102
+ ++ +I + ++L++ + + + T + +D ++ + ++ +
Sbjct: 115 KEELANSYVIDADNYLFKNMFRNDLTRS-------TYFSVYREDC--TNEWFLVYGDDYK 165
Query: 103 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL------LNLLR 156
V K + ++ GV + ++
Sbjct: 166 VQDIIVDS--KAGRILS----------------------GVSFWDAPTAEKIVSFIDKAY 201
Query: 157 WRFPTANDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEAN 201
+ + ++ + E + +I +++ + +
Sbjct: 202 VSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 247
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 99.97 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 99.97 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 99.97 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.88 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 99.82 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 99.77 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 99.77 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 99.72 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 99.71 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 99.71 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.7 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.7 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.69 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 99.68 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.67 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 99.66 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.66 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.65 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.64 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.63 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 99.63 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 99.6 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 99.6 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.58 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.57 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.55 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.54 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.51 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.51 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.5 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.48 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.47 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.46 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.46 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.46 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.45 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.43 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.43 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.43 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.42 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.42 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.42 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.42 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.36 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.35 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.33 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.33 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.33 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.31 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.3 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.29 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 99.29 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.29 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.29 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.28 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.28 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.27 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.27 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.27 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.26 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.26 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 99.26 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.25 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 99.25 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.25 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.25 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.24 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.24 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.24 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.24 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.23 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.23 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.22 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.22 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.22 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.21 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.21 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 99.2 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.2 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.18 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.16 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.15 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.13 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.1 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.1 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.06 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 99.06 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.06 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.05 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.05 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 99.05 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.04 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 99.02 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.01 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 99.01 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 99.01 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 99.0 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.99 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 98.95 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.94 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.94 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.92 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 98.86 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.86 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.85 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.83 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.83 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.82 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.81 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 98.8 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.79 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.77 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.76 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.74 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.73 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.72 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.68 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 98.68 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.68 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.66 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.65 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.64 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 98.62 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.6 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.59 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.57 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 98.57 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.57 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.56 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.55 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.45 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.43 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.36 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 98.35 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 98.32 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 98.31 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.29 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.29 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.24 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.21 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.15 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 98.08 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.06 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 97.93 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 97.89 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 97.88 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 97.83 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 97.79 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 97.7 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 97.46 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 96.99 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 96.81 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 96.77 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 96.64 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 96.54 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 96.1 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 96.05 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 95.86 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.97 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 94.63 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 94.38 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 91.26 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 88.99 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=365.90 Aligned_cols=335 Identities=55% Similarity=1.008 Sum_probs=286.7
Q ss_pred ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCc
Q 018109 23 RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 102 (360)
Q Consensus 23 ~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 102 (360)
+|.+||+++|+.+..++++ ..+++|||++||++++.+|+++++.|+++++++|+++.+++.+.+.+||++.+|++++
T Consensus 115 ~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~ 191 (451)
T 1yp2_A 115 DWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGR 191 (451)
T ss_dssp CCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTSB
T ss_pred ccccCcHHHHHHHHHHHHh---cCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEEECCCCC
Confidence 4568999999999999863 1247999999999999999999999999999999998887532356899999988899
Q ss_pred eEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccccccc-CceEE
Q 018109 103 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANE-QFLKA 181 (360)
Q Consensus 103 V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~-~~I~~ 181 (360)
|+.|.|||+....+.+.++..++..++........++++|+|+|++++|..++++..+...++.+++|+.++++ .++.+
T Consensus 192 v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l~~~i~~g~~v~~ 271 (451)
T 1yp2_A 192 IIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQA 271 (451)
T ss_dssp EEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHHHHHHTTCCEEE
T ss_pred EEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhHHHHHHhcCCceEE
Confidence 99999999864333344555555443221111357899999999999987666665344456667888888876 79999
Q ss_pred EEeCCceeecCCHHHHHHHHHHhhcCC-CCCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEcceEEeeeEEec
Q 018109 182 YLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGI 260 (360)
Q Consensus 182 ~~~~g~w~digtp~~~~~a~~~~l~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~~~~i~~~~ig~ 260 (360)
|+++++|.|+|||++|.++++.++.+. +...++++++.+++++.+++++++.++.|.++.||++|.|.++.+.+++||+
T Consensus 272 ~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~~~~Ig~~~~I~~~~i~~~~Ig~ 351 (451)
T 1yp2_A 272 YLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGL 351 (451)
T ss_dssp EECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEEEEEEEEEEEECTTCEEEEEEEESCEECT
T ss_pred EEeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEEcceEEeCeEECCCCEEcceEEeccEECC
Confidence 999999999999999999999999876 5667889999999999999999997788889999999999987788999999
Q ss_pred CeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceE
Q 018109 261 RSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFY 340 (360)
Q Consensus 261 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 340 (360)
+|.|++++.|+++++++++|++.+...++....|.+.+.||++|.|.+|+||++|.||+++++.+++++.++.+|+++++
T Consensus 352 ~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ 431 (451)
T 1yp2_A 352 RSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYF 431 (451)
T ss_dssp TCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECCSSCCSCEEEGGGTEE
T ss_pred CCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEECCCCEEeCCcccccCceeCCCEE
Confidence 99999999999999999878888877888877877668999999999999999999999999999999988889999999
Q ss_pred EeCCeEEEcCCcEeCCCccC
Q 018109 341 IRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 341 i~~~~~~ig~~~~i~~g~~i 360 (360)
|++++++||++++||+|++|
T Consensus 432 ig~~~v~Ig~~a~i~agsvv 451 (451)
T 1yp2_A 432 IKSGIVTVIKDALIPSGIII 451 (451)
T ss_dssp EETTEEEECTTCEECTTCBC
T ss_pred EcCCEEEECCCcEECCCccC
Confidence 99999999999999999986
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=285.24 Aligned_cols=268 Identities=33% Similarity=0.589 Sum_probs=218.6
Q ss_pred ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCc
Q 018109 23 RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 102 (360)
Q Consensus 23 ~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 102 (360)
.|++||+++|+++..++.+ ...++|+|++||.+++.++.++++.|+++++++|+++.+++...+..||++..|++++
T Consensus 105 ~~~~Gt~~al~~a~~~l~~---~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~g~ 181 (420)
T 3brk_X 105 QWYEGTADAVYQNIDIIEP---YAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDE 181 (420)
T ss_dssp -CCCCHHHHHHTTHHHHHH---HCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEECTTSB
T ss_pred ccccCCHHHHHHHHHHHHh---cCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEECCCCc
Confidence 3558999999999998852 0137899999999999999999999999999999998887543467899999988899
Q ss_pred eEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC---CcchhhcccccccccCce
Q 018109 103 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASANEQFL 179 (360)
Q Consensus 103 V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~---~~~~~~~~l~~~i~~~~I 179 (360)
|+.|.|||..+... .. .....++++|+|+|++++|..++++..+. ..++..++++.+++++++
T Consensus 182 v~~~~ekp~~~~~~--~~------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~li~~g~v 247 (420)
T 3brk_X 182 IIDFIEKPADPPGI--PG------------NEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKA 247 (420)
T ss_dssp EEEEEESCSSCCCB--TT------------BTTEEEEEEEEEEEEHHHHHHHHTSSCCC----------CTTHHHHHSCE
T ss_pred EEEeEeCCCccccc--cc------------cccceEEeeeeEEEeHHHHHHHHHHhcccCCccccchHHHHHHHhhhCcE
Confidence 99999998643210 00 00246899999999999886666543221 223445788888877799
Q ss_pred EEEEe-----------CCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCcee-c-----CceeeceEE
Q 018109 180 KAYLF-----------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-D-----DSKIVDSII 242 (360)
Q Consensus 180 ~~~~~-----------~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~-----~~~i~~~~i 242 (360)
++|.+ +++|.|+|||++|.++++.++...+...+..+.+++++.+.+.|++.+ . ++.+.++.|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~~i~~~~i 327 (420)
T 3brk_X 248 VAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVV 327 (420)
T ss_dssp EEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCCCEEECBCSSCBCEEESCEE
T ss_pred EEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCCCcEEecccccCCcEecCCEE
Confidence 99999 899999999999999999999887766677778889999999999999 4 577789999
Q ss_pred CCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcE
Q 018109 243 SHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVI 322 (360)
Q Consensus 243 ~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~ 322 (360)
|++|.|.++.|.+++||++|.|+++|.|+++++ +++ +.||++|.|.+|+||++|.||++++
T Consensus 328 g~~~~I~~~~i~~~~ig~~~~I~~~~~i~~~~i-~~~------------------~~i~~~~~i~~~~ig~~~~i~~~~~ 388 (420)
T 3brk_X 328 SGDCIISGAALNRSLLFTGVRANSYSRLENAVV-LPS------------------VKIGRHAQLSNVVIDHGVVIPEGLI 388 (420)
T ss_dssp CSSCEEESCEEESCEECTTCEECTTCEEEEEEE-CTT------------------CEECTTCEEEEEEECTTCEECTTCE
T ss_pred CCCCEEcCCEEeCcEEcCCCEECCCCEEcceEE-cCC------------------CEECCCCEEeceEECCCCEECCCCE
Confidence 999999877889999999999999999997655 444 9999999999999999999999999
Q ss_pred EecC
Q 018109 323 IANS 326 (360)
Q Consensus 323 ~~~~ 326 (360)
+...
T Consensus 389 i~~~ 392 (420)
T 3brk_X 389 VGED 392 (420)
T ss_dssp ESSC
T ss_pred EeCC
Confidence 9854
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=287.97 Aligned_cols=326 Identities=18% Similarity=0.198 Sum_probs=224.6
Q ss_pred CCCcEEEeeCcccCCCCC-------------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeec-C
Q 018109 4 LTGNSQVLAATQTPGEAG-------------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-D 62 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~-------------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~-d 62 (360)
..|+++++++.+|.++++ +++++|||+||+++++++++ ...+++|+++||. +.+. .
T Consensus 52 ~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~q~~~lGTa~Av~~a~~~l~~---~~~~~~lvl~gd~~l~~~~~ 128 (501)
T 3st8_A 52 KLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPD---DYAGNVVVTSGDTPLLDADT 128 (501)
T ss_dssp HHCCSEEEEEECTTHHHHHHHHHHHHHHHTSCCEEEECSSCCCHHHHHHHHHTTSCT---TCCSEEEEEETTCTTCCHHH
T ss_pred hCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCCcHHHHHHHHHHhcc---ccccceeeecCcceeecHHH
Confidence 357889999998876533 34468999999999999964 2246899999998 5544 4
Q ss_pred HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeee
Q 018109 63 YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMG 142 (360)
Q Consensus 63 l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~G 142 (360)
+.+|+++|+++++++|++..++++ |..||++..|++++|++|.|||+.+.. ++ ...++++|
T Consensus 129 ~~~l~~~h~~~~~~~ti~~~~~~d--p~~yG~i~~~~~g~v~~ivEk~~~~~~---------------~~--~i~~in~G 189 (501)
T 3st8_A 129 LADLIATHRAVSAAVTVLTTTLDD--PFGYGRILRTQDHEVMAIVEQTDATPS---------------QR--EIREVNAG 189 (501)
T ss_dssp HHHHHHHHHHTTCSEEEEEEECSC--CTTSCEEEECTTCCEEEEECGGGCCHH---------------HH--HCCEEEEE
T ss_pred HHHHHHHHhhccccceEeeeccCC--chhccccccccceeEEeeccccCCChh---------------hc--cceeeece
Confidence 899999999999999999999988 789999999999999999999876431 11 24689999
Q ss_pred EEEEeHHHHHHHHHhhCCCCcchhhcccccccc-----cCceEEEEeCCceeecCC--HHHHHHHHHHh---------hc
Q 018109 143 VYLFKKEILLNLLRWRFPTANDFGSEIIPASAN-----EQFLKAYLFNDYWEDIGT--IRSFFEANLAL---------TA 206 (360)
Q Consensus 143 Iyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~-----~~~I~~~~~~g~w~digt--p~~~~~a~~~~---------l~ 206 (360)
+|+|++++|..+++..... +...+.++++.+. +..+.++....+|...+. ...+.++...+ +.
T Consensus 190 iy~f~~~~l~~~l~~l~~~-n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~ 268 (501)
T 3st8_A 190 VYAFDIAALRSALSRLSSN-NAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLA 268 (501)
T ss_dssp EEEEEHHHHHHHHTTCCCC-STTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeecchhHHHhhhhhccc-ccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhccc
Confidence 9999999998887664322 2233455555432 577888888777766554 33443333222 11
Q ss_pred CC----CCCCccCCCCceeccCCCCCCceec-------------CceeeceEECCCCEEcceEEeeeEEecCeEECCC--
Q 018109 207 HP----PMFSFYDATKPIYTSRRNLPPSKID-------------DSKIVDSIISHGSFITSSFIEHSVVGIRSRINAN-- 267 (360)
Q Consensus 207 ~~----~~~~~~~~~~~v~~~~~~~~~~~~~-------------~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~-- 267 (360)
.. +...+++.+..+..++.|.+++.+. .+.+.++.++.++.+.++.+..+.+|+++.++++
T Consensus 269 gv~~~dp~~~~i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~ 348 (501)
T 3st8_A 269 GVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTY 348 (501)
T ss_dssp TCEESCGGGEEECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEE
T ss_pred CceeeeeccccccCceEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCcee
Confidence 11 2334455555566666665555552 2222333344444333333333344444444444
Q ss_pred ----CEEeceEEECCcccchhHHHHhh-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccc-cccCCceEE
Q 018109 268 ----VHLKDTMMLGADFYETDAEVASL-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYI 341 (360)
Q Consensus 268 ----~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i 341 (360)
+.|++.+.+| +|++.+ ++ +++| ++|++.+++.+|+||++|+||+++++.|+++..++ .+|||+++|
T Consensus 349 i~~~~~i~~~v~IG-~~v~ik----~s~Ig~g---skI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~i 420 (501)
T 3st8_A 349 LRPGTALGADGKLG-AFVEVK----NSTIGTG---TKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRT 420 (501)
T ss_dssp ECTTCEECTTCEEE-ETEEEE----SCEECTT---CEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEE
T ss_pred ecCCcEEccccccC-CeEEEc----cceecCC---cEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEE
Confidence 3343444444 234333 33 3444 78888888899999999999999999999999997 589999999
Q ss_pred eCCeE-----EEcCCcEeCCCccC
Q 018109 342 RSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 342 ~~~~~-----~ig~~~~i~~g~~i 360 (360)
|+++. .||++|+||+||+|
T Consensus 421 G~~~~l~~~v~Ig~~~~i~ags~v 444 (501)
T 3st8_A 421 GSDTMFVAPVTIGDGAYTGAGTVV 444 (501)
T ss_dssp CTTCEEESSEEECTTCEECTTCEE
T ss_pred CCCCEEcCCcEECCCCEECCCCEE
Confidence 98874 78999999999985
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=273.17 Aligned_cols=325 Identities=22% Similarity=0.309 Sum_probs=225.2
Q ss_pred CCcEEEeeCcccCCCCC------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHH
Q 018109 5 TGNSQVLAATQTPGEAG------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNH 70 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h 70 (360)
.|+++++++.++..+.. .++.+||+++|+.+..+++. ..++||+++||. +...+++++++.|
T Consensus 52 ~g~~~iivv~~~~~~~i~~~~~~~i~~v~~~~~~G~~~sl~~a~~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~ 127 (468)
T 1hm9_A 52 IQPEKTVTVVGHKAELVEEVLAGQTEFVTQSEQLGTGHAVMMTEPILEG----LSGHTLVIAGDTPLITGESLKNLIDFH 127 (468)
T ss_dssp TCCSEEEEEECTTHHHHHHSSSSSSEEEECSSCCCHHHHHHTTHHHHTT----CCSEEEEEETTCTTCCHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCHHHHHHHhCCCcEEEeCCccCChHHHHHHHHHHhcc----CCCeEEEEeCCccccCHHHHHHHHHHH
Confidence 47788888876643211 23457999999999999852 137999999999 6677899999999
Q ss_pred HHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHH
Q 018109 71 RQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEI 150 (360)
Q Consensus 71 ~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~v 150 (360)
++.+++++++..+.++ +..||.+..|++++|+.|.|||..... . ....++++|+|+|+++.
T Consensus 128 ~~~~~~~~i~~~~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~---------------~--~~~~~~~~Giy~f~~~~ 188 (468)
T 1hm9_A 128 INHKNVATILTAETDN--PFGYGRIVRNDNAEVLRIVEQKDATDF---------------E--KQIKEINTGTYVFDNER 188 (468)
T ss_dssp HHTTCSEEEEEEECSC--CTTSCEEEECTTCCEEEEECTTTCCTT---------------G--GGCCEEEEEEEEEEHHH
T ss_pred HhcCCcEEEEEeccCC--CCceeEEEECCCCCEEEEEECCCCChH---------------H--hcCeEEEEEEEEEEHHH
Confidence 9999999998888776 567999888888999999999753210 0 02468999999999996
Q ss_pred HHHHHHhhCCC---Ccchhhcccccccc-cCceEEEEeCCceeecC--CHHHHHHHHHHhhcC-------------CCCC
Q 018109 151 LLNLLRWRFPT---ANDFGSEIIPASAN-EQFLKAYLFNDYWEDIG--TIRSFFEANLALTAH-------------PPMF 211 (360)
Q Consensus 151 l~~ll~~~~~~---~~~~~~~~l~~~i~-~~~I~~~~~~g~w~dig--tp~~~~~a~~~~l~~-------------~~~~ 211 (360)
|.+++++.... ...+..+.++.+++ +.++++|.++++|.+++ ||++|.+++..+..+ .+..
T Consensus 189 l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~ 268 (468)
T 1hm9_A 189 LFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEA 268 (468)
T ss_dssp HHHHHTTCCSCSTTCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGG
T ss_pred HHHHHHhhccccCCCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCe
Confidence 65555543221 11122456666666 46899999999998855 999999998765322 1112
Q ss_pred CccCCC------------CceeccCCCCCCcee-cCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECC
Q 018109 212 SFYDAT------------KPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 278 (360)
Q Consensus 212 ~~~~~~------------~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~ 278 (360)
.++++. +.+.+.+.|+++|.| .++.|.++.||++|.|.++.+.+++||+++.|++++.|...+++|+
T Consensus 269 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~ 348 (468)
T 1hm9_A 269 TYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGA 348 (468)
T ss_dssp CEECTTCEECTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECT
T ss_pred eEECCCcEECCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECC
Confidence 223333 333344444555555 3455666777777777766667778888888888888875555565
Q ss_pred cccchh-HHHHhhhhCCCcceEECCCCe------EeeeEecCCCEECCCcEEecCCCcccc-cccCCceEEeCCeE----
Q 018109 279 DFYETD-AEVASLLAEGRVPVGIGENTK------IKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVT---- 346 (360)
Q Consensus 279 ~~~~~~-~~~~~~~~~~~~~~~ig~~~~------i~~~~i~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~---- 346 (360)
+-.+.+ ++++. +.||+++. +.+++||++|.||+++++.++++..++ +.||++++|+.+++
T Consensus 349 ~~~Ig~~~~i~~--------~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~ 420 (468)
T 1hm9_A 349 QVHIGNFVEVKG--------SSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAP 420 (468)
T ss_dssp TCEEEEEEEEES--------CEECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESS
T ss_pred ccEECCCcEEee--------eEEcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCC
Confidence 422111 11111 33444444 356788999999999999887776663 58888888888875
Q ss_pred -EEcCCcEeCCCccC
Q 018109 347 -VILKNSVITDGFVI 360 (360)
Q Consensus 347 -~ig~~~~i~~g~~i 360 (360)
+||+++.||+|++|
T Consensus 421 v~Ig~~~~i~~~s~v 435 (468)
T 1hm9_A 421 VELGDNSLVGAGSTI 435 (468)
T ss_dssp CEECTTCEECTTCEE
T ss_pred cEECCCCEECCCCEE
Confidence 57888888888864
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=258.60 Aligned_cols=308 Identities=15% Similarity=0.174 Sum_probs=205.9
Q ss_pred ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCC
Q 018109 23 RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 100 (360)
Q Consensus 23 ~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 100 (360)
++.+||+++|+.+..++++ .++|++++||. +...+++++++.|++ ++++++..+..+ +..||.+..| +
T Consensus 80 ~~~~g~~~~i~~~~~~~~~-----~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~--~~~~g~v~~~-~ 149 (459)
T 4fce_A 80 AEQLGTGHAMQQAAPHFAD-----DEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKLDN--PSGYGRIVRE-N 149 (459)
T ss_dssp SSCCCHHHHHHHHGGGSCT-----TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSC--CTTSCEEEEE-T
T ss_pred CCCCCcHHHHHHHHHhcCC-----CCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEecCC--CCcccEEEeC-C
Confidence 3457999999999998863 48999999999 667779999998865 567777777766 6789998887 7
Q ss_pred CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC---Ccchhhcccccccc-c
Q 018109 101 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASAN-E 176 (360)
Q Consensus 101 g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~---~~~~~~~~l~~~i~-~ 176 (360)
++++.+.|||..... . ....++++|+|+|+++.|..+++..... ...+..+.++.+++ +
T Consensus 150 g~v~~~~ek~~~~~~---------------~--~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g 212 (459)
T 4fce_A 150 GDVVGIVEHKDASDA---------------Q--REINEINTGILVANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADG 212 (459)
T ss_dssp TEEEEEECGGGCCTT---------------G--GGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSCCTTHHHHHHHHTT
T ss_pred CcEEEEEECCCCChH---------------H--hhccEEEEEEEEEEHHHHHHHHHHhCccccCCcEEHHHHHHHHHHCC
Confidence 999999998753221 0 1257899999999999886666653211 11112344444444 4
Q ss_pred CceEEEEeCCce--eecCCHHHHHHHHHHhhcCC-------------CCCCccCCCCceec------------cCCCCCC
Q 018109 177 QFLKAYLFNDYW--EDIGTIRSFFEANLALTAHP-------------PMFSFYDATKPIYT------------SRRNLPP 229 (360)
Q Consensus 177 ~~I~~~~~~g~w--~digtp~~~~~a~~~~l~~~-------------~~~~~~~~~~~v~~------------~~~~~~~ 229 (360)
.++.+++.+++| ++++||++|..++..+..+. |....+++.+.+++ .+.|+.+
T Consensus 213 ~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~ 292 (459)
T 4fce_A 213 KKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDR 292 (459)
T ss_dssp CCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSSCEECTTEEEEEEEEECTT
T ss_pred CeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCCcEECCCeeeccceEECCC
Confidence 689999998766 66999999999986554221 11122222222333 3333444
Q ss_pred cee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchh-HHHHhh-hhCCCcceEECCCCe
Q 018109 230 SKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETD-AEVASL-LAEGRVPVGIGENTK 305 (360)
Q Consensus 230 ~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~ig~~~~ 305 (360)
+.| .++.|.++.||++|.|+ ++.|.+++||++|.|++++.|...+++|++-.+.+ +.++.. +.+| +.+++.+.
T Consensus 293 ~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~---~~i~~~~~ 369 (459)
T 4fce_A 293 VRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKG---SKAGHLSY 369 (459)
T ss_dssp CEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEEEEECTT---CEEEEEEE
T ss_pred CEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEeeeEEcCC---CEECCceE
Confidence 444 34555566777777776 66666666666666666666665445554322211 112111 1111 34444455
Q ss_pred EeeeEecCCCEECCCcEEecCCCcccc-cccCCceEEeCCeE-----EEcCCcEeCCCccC
Q 018109 306 IKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 306 i~~~~i~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~-----~ig~~~~i~~g~~i 360 (360)
+++++||++|.||+++++.+..++.++ ++|||+++||.+++ .||++|.||+|++|
T Consensus 370 i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igagsvV 430 (459)
T 4fce_A 370 LGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTV 430 (459)
T ss_dssp EEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEE
T ss_pred ECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 567799999999999999998888875 68899999988874 66888888888874
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-30 Score=249.06 Aligned_cols=278 Identities=18% Similarity=0.258 Sum_probs=210.0
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeee--cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCC
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 101 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~--~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g 101 (360)
+++|++++|+.+.+ .++|++++||.++. .+++++++ .+++++++.+.++ +..|+.+..++++
T Consensus 76 ~~~g~~~~l~~~~~---------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~~--~~~~~~v~~~~~g 139 (401)
T 2ggo_A 76 DIKGTGAAILSAKF---------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVSN--PKDYGVLVLDNQN 139 (401)
T ss_dssp TCCBSTTTGGGCCC---------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECSC--CSSSCEEEECTTS
T ss_pred CCCChHHHHHHhcc---------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcCC--CcceeEEEECCCC
Confidence 36799999987764 27899999999876 55777776 4567888888776 5679988888789
Q ss_pred ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCC---CCcchhhcccccccc-cC
Q 018109 102 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASAN-EQ 177 (360)
Q Consensus 102 ~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~---~~~~~~~~~l~~~i~-~~ 177 (360)
++..+.|||..+. +.++++|+|+|++++|+. +++..+ ....+ .++++.+ + +.
T Consensus 140 ~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~~~~-~~~~~~~-~~g~ 195 (401)
T 2ggo_A 140 NLSKIIEKPEIPP---------------------SNLINAGIYKLNSDIFTY-LDKISISERGELEL-TDAINLM-AKDH 195 (401)
T ss_dssp SEEEEECSCSSCS---------------------CSEEEEEEEEEETHHHHH-HHHSCCCSSSCBCH-HHHHHHH-HHHS
T ss_pred eEEEEEECCCCCC---------------------CcEEEEEEEEEcHHHHHH-hhhcCcCCCCceEH-HHHHHHH-HCCC
Confidence 9999999986432 468999999999999975 454321 11222 3555555 4 46
Q ss_pred ceEEEEeCCceeecCCHHHHHHHHHHhhcCCC---CCCccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ce
Q 018109 178 FLKAYLFNDYWEDIGTIRSFFEANLALTAHPP---MFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SS 251 (360)
Q Consensus 178 ~I~~~~~~g~w~digtp~~~~~a~~~~l~~~~---~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~ 251 (360)
++.+++.+++|.|++||++|.++++.++.+.. ....+++.+.+.+.+.+++++.+ .++.+. ++.||++|.|+ ++
T Consensus 196 ~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~ 275 (401)
T 2ggo_A 196 RVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNS 275 (401)
T ss_dssp CEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSC
T ss_pred cEEEEEecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCC
Confidence 89999999999999999999999998886542 11345556666666666766666 455554 78899999997 77
Q ss_pred EEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCC--
Q 018109 252 FIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEG-- 328 (360)
Q Consensus 252 ~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~-- 328 (360)
.|. +++||++|.|++++.|+++++ +++ +.|++++.|.+++||++|.||+++.+.+...
T Consensus 276 ~i~~~~~Ig~~~~ig~~~~i~~~~i-~~~------------------~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~ 336 (401)
T 2ggo_A 276 YLRPYTILVEKNKIGASVEVKESVI-MEG------------------SKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDE 336 (401)
T ss_dssp EECTTEEECSSCEEEETCEEESEEE-CTT------------------CEEEESCEEESCEECTTCEECTTCEECCSCTTC
T ss_pred EEcCCcEECCCCEECCCCEEecCEE-cCC------------------cEECCCceEcceEECCCcEECCCcEEcCcccCC
Confidence 776 799999999999999966655 444 9999999999999999999999999984211
Q ss_pred ----------------cccccccCCceEEeCCeE-----EEcCCcEeCCCccC
Q 018109 329 ----------------IQEADRSAEGFYIRSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 329 ----------------~~~~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~i 360 (360)
....++|+++++|+.+++ +||+++.|++|++|
T Consensus 337 ~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv 389 (401)
T 2ggo_A 337 KEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVV 389 (401)
T ss_dssp SCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEECCCCeE
Confidence 112457777777777663 56788888888764
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-29 Score=246.75 Aligned_cols=325 Identities=17% Similarity=0.219 Sum_probs=200.3
Q ss_pred CCcEEEeeCcccCCCC--------C-----CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHH
Q 018109 5 TGNSQVLAATQTPGEA--------G-----KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQN 69 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~--------~-----~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~ 69 (360)
.|+++++++.++..+. . .++.+||+++++++.+++++ .++||+++||. +...+++++++.
T Consensus 46 ~~~~~iivv~~~~~~~i~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~ 120 (456)
T 2v0h_A 46 LGSENIHLIYGHGGDLMRTHLANEQVNWVLQTEQLGTAHAVQQAAPFFKD-----NENIVVLYGDAPLITKETLEKLIEA 120 (456)
T ss_dssp TTCSCEEEEECTTHHHHHHHTTTCCCEEEECSCCCCHHHHHHHHGGGCCT-----TSEEEEEETTCTTCCHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCHHHHHHHhhcCCcEEEeCCCCCCcHHHHHHHHHhcCC-----CCeEEEEcCCcceeCHHHHHHHHHH
Confidence 3566676666653221 0 12357999999999998853 47999999999 567789999998
Q ss_pred HHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH
Q 018109 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 149 (360)
Q Consensus 70 h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~ 149 (360)
|++ ++++++..+.++ +..|+.+..| ++++..+.|||..... . ....++++|+|+|+++
T Consensus 121 ~~~--~~~~~~~~~~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~---------------~--~~~~~~~~Giy~~~~~ 178 (456)
T 2v0h_A 121 KPE--NGIALLTVNLDN--PTGYGRIIRE-NGNVVAIVEQKDANAE---------------Q--LNIKEVNTGVMVSDGA 178 (456)
T ss_dssp CCT--TSEEEEEEECSS--CTTSCEEEEE-TTEEEEEECTTTCCHH---------------H--HTCCEEEEEEEEEEHH
T ss_pred Hhc--CCEEEEEeecCC--CCccceEEEc-CCcEEEEEECCCCChh---------------H--hcCcEEEEEEEEEEHH
Confidence 876 577888877766 5679988877 7899999998763210 0 0246899999999999
Q ss_pred HHHHHHHhhCCCC---cchhhcccccccc-cCceEEEEeCCc--eeecCCHHHHHHHHHHhhcCC------CCCCccCC-
Q 018109 150 ILLNLLRWRFPTA---NDFGSEIIPASAN-EQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDA- 216 (360)
Q Consensus 150 vl~~ll~~~~~~~---~~~~~~~l~~~i~-~~~I~~~~~~g~--w~digtp~~~~~a~~~~l~~~------~~~~~~~~- 216 (360)
.|...++...... .....+.++.+++ +.++.+|+.+++ |++++||++|.++++.+..+. ....++++
T Consensus 179 ~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~ 258 (456)
T 2v0h_A 179 SFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPA 258 (456)
T ss_dssp HHHHHHTTCCCCSTTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGG
T ss_pred HHHHHHHHhccccccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCC
Confidence 7766665432210 1112345555554 468999998765 568999999999987654321 01111121
Q ss_pred CCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchh-HHHHhh--
Q 018109 217 TKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETD-AEVASL-- 290 (360)
Q Consensus 217 ~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~~~-- 290 (360)
.+.+.+++.+++++.+ .++.|. ++.||++|.|+ ++.|.+++||++|.|++++.|.++ .+|++-...+ +.++.+
T Consensus 259 ~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~-~ig~~~~I~~~~~i~~~~~ 337 (456)
T 2v0h_A 259 RFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDS-IVGEKAAIGPFSRLRPGAE 337 (456)
T ss_dssp GEEEEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEE-EECTTCEECSSEEECTTCE
T ss_pred ccEEcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccC-cCCCCcEECCccEECCCCE
Confidence 1223333334444443 223332 55666666666 555556666666666665555432 2333211111 000000
Q ss_pred hhCCCcceEE-----------CCCCeE------eeeEecCCCEECCCcEEecCCCccc-ccccCCceEEeCCeE-----E
Q 018109 291 LAEGRVPVGI-----------GENTKI------KECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVT-----V 347 (360)
Q Consensus 291 ~~~~~~~~~i-----------g~~~~i------~~~~i~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-----~ 347 (360)
++++ +.| ++++.+ .++.||++|.||+++++.++.+..+ .+.||++++|+.+++ .
T Consensus 338 ig~~---~~ig~~~~i~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~ 414 (456)
T 2v0h_A 338 LAAE---THVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVK 414 (456)
T ss_dssp ECTT---CEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEE
T ss_pred ECCC---CEECCCCEEeccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcE
Confidence 0000 222 222222 3358888999999998888666555 458888888888774 5
Q ss_pred EcCCcEeCCCccC
Q 018109 348 ILKNSVITDGFVI 360 (360)
Q Consensus 348 ig~~~~i~~g~~i 360 (360)
||+++.||++++|
T Consensus 415 Ig~~~~ig~~s~v 427 (456)
T 2v0h_A 415 VANGATIGAGTTI 427 (456)
T ss_dssp ECTTCEECTTCEE
T ss_pred ECCCCEECCCCEE
Confidence 7888888888864
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-23 Score=201.55 Aligned_cols=259 Identities=13% Similarity=0.107 Sum_probs=154.9
Q ss_pred eEEEEcCceeeec--CHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECC--CCceEEEEecCCccccccccccccc
Q 018109 49 DVLILSGDHLYRM--DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN--EGRVLSFSEKPKGKDLKAMAVDTTV 124 (360)
Q Consensus 49 ~fLVv~gD~i~~~--dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~--~g~V~~~~ekp~~~~~~~~~i~~~~ 124 (360)
.=||-.+|+++++ ||++|+++|. + ++.. .+ .+..+|+..+++ +++| .|.|||+...
T Consensus 12 ~~~~~~~dhiy~m~~~l~~i~~~h~---~--tl~g--~~--~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~---------- 71 (374)
T 2iu8_A 12 SGLVPRGSHMSQSTYSLEQLADFLK---V--EFQG--NG--ATLLSGVEEIEEAKTAHI-TFLDNEKYAK---------- 71 (374)
T ss_dssp ---------CCSCCEEHHHHHHHTT---C--EEES--CT--TCEECEECCTTTCCTTEE-EECCSSSTHH----------
T ss_pred cCcccCccccccCcCcHHHHHHhhC---C--EEEC--CC--cceEEEEeccccCCCCeE-EEEeCchhhh----------
Confidence 3478889999998 8999999986 2 5543 23 366788877763 4566 9999997432
Q ss_pred cccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEeCCceeec--CCHHHHHHHHH
Q 018109 125 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDI--GTIRSFFEANL 202 (360)
Q Consensus 125 ~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~~g~w~di--gtp~~~~~a~~ 202 (360)
...+.++|+|+|+++++.++. ++ .+.+| ++...+.++|....+|++. .++.
T Consensus 72 ----------~~~~~~aGiyI~~~~~l~~~~--------~~-~~~~p-l~~~~~~~a~~~~~~~~~~~i~~~~------- 124 (374)
T 2iu8_A 72 ----------HLKSSEAGAIIISRTQFQKYR--------DL-NKNFL-ITSESPSLVFQKCLELFITPVDSGF------- 124 (374)
T ss_dssp ----------HHHTCCCSEEEEEHHHHHTST--------TS-CSCEE-EESSCHHHHHHHHHTTTSCCCCCSC-------
T ss_pred ----------hhhcCCcEEEEeChhHhhhcc--------cc-ccceE-EEeCCHHHHHHHHHHHhcccccccc-------
Confidence 124679999999999774321 12 45677 6666566555555566664 2221
Q ss_pred HhhcCCCCCCccCCCCceeccCCCCCCceec-Cce------------e-eceEECCCCEEc-ceEE-eeeEEecCeEECC
Q 018109 203 ALTAHPPMFSFYDATKPIYTSRRNLPPSKID-DSK------------I-VDSIISHGSFIT-SSFI-EHSVVGIRSRINA 266 (360)
Q Consensus 203 ~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~------------i-~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~ 266 (360)
....+..++++++.+++++.|++++.+. ++. | .++.||++|.|. ++.| .+++||++|.|++
T Consensus 125 ---~~i~~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~ 201 (374)
T 2iu8_A 125 ---PGIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQP 201 (374)
T ss_dssp ---CSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECT
T ss_pred ---CccCCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECC
Confidence 1122345556666666665555555552 222 2 134444444444 4444 2455566666666
Q ss_pred CCEEece--------------------EEECCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEe
Q 018109 267 NVHLKDT--------------------MMLGADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIA 324 (360)
Q Consensus 267 ~~~i~~~--------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~ 324 (360)
++.|+.. +++|++-.+.. ++|.++..++ +.||+++.|. .+.|+++|+||++|++.
T Consensus 202 ~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~~~~~~~---t~ig~~~~i~~~v~I~~~v~IG~~~~i~ 278 (374)
T 2iu8_A 202 GAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGRFKH---SVVREGSKIDNLVQIAHQVEVGQHSMIV 278 (374)
T ss_dssp TCEEEEECSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEEECSSSC---EEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CCEECcCCcccccccCCceeEeeeeccEEECCCCEECCCcEEccCcccc---eeECCCcEECCccccCCccEECCCCEEc
Confidence 6655432 55554421111 2222222221 5555555555 47788999999999999
Q ss_pred cCCCcccccccCCceEEeCCe-----EEEcCCcEeCCCccC
Q 018109 325 NSEGIQEADRSAEGFYIRSGV-----TVILKNSVITDGFVI 360 (360)
Q Consensus 325 ~~~~~~~~~~~~~~~~i~~~~-----~~ig~~~~i~~g~~i 360 (360)
+.+.+.++++|+++++|+.++ +.||+++.|+++++|
T Consensus 279 ~~~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V 319 (374)
T 2iu8_A 279 AQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGV 319 (374)
T ss_dssp TTCEECTTCEECSSCEECTTCEECSSCEECTTEEECTTCEE
T ss_pred cCcccCCCcEECCCeEEecCcEECCCcccCCCcEEccCcee
Confidence 999999999999999999877 477888999888864
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=168.55 Aligned_cols=158 Identities=18% Similarity=0.277 Sum_probs=128.1
Q ss_pred ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC-----HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEE
Q 018109 23 RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-----YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI 97 (360)
Q Consensus 23 ~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d-----l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~ 97 (360)
++++||+++|+++.+++.+ ++|+|++||.+++.+ ++++++.|+++++ .++++..++...+.+||++..
T Consensus 103 ~~~~Gt~~al~~a~~~l~~------~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~~~~g~v~~ 175 (281)
T 3juk_A 103 KQMKGLGHAILTGEALIGN------EPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVAIEEVALEEVSKYGVIRG 175 (281)
T ss_dssp SSCCCHHHHHHHTHHHHCS------SCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-CEEEEEECCTTTGGGSEEEEE
T ss_pred CCCCCcHHHHHHHHHHcCC------CCEEEEeCCeeccCccchHHHHHHHHHHHHcCC-CEEEEEEechhhcccCCEEEe
Confidence 3468999999999999963 799999999999999 9999999999887 677777776545789999998
Q ss_pred CC--CC--ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC---Ccchhhccc
Q 018109 98 NN--EG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEII 170 (360)
Q Consensus 98 d~--~g--~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~---~~~~~~~~l 170 (360)
|+ +| +|..|.|||..... .+.++++|+|+|++++|+. +++..+. ...+ .+.+
T Consensus 176 ~~~~~g~~~v~~~~Ekp~~~~~-------------------~~~~~~~GiYi~~~~~l~~-l~~~~~~~~~e~~l-~d~i 234 (281)
T 3juk_A 176 EWLEEGVYEIKDMVEKPNQEDA-------------------PSNLAVIGRYILTPDIFEI-LSETKPGKNNEIQI-TDAL 234 (281)
T ss_dssp EEEETTEEEEEEEEESCCTTTC-------------------SCSEEEEEEEEECTTHHHH-HHTCCCCGGGSCCH-HHHH
T ss_pred ccCCCCceEEeEEEECcCCCCC-------------------CcceeEEEEEEECHHHHHH-HHhcCCCCCCceeH-HHHH
Confidence 76 67 99999999974221 2568999999999999965 4543221 1222 4567
Q ss_pred ccccccCceEEEEeCCceeecCCHHHHHHHHHHhhcCC
Q 018109 171 PASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 208 (360)
Q Consensus 171 ~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~ 208 (360)
+.+++++++.+|+++++|+|||||++|.++++.++...
T Consensus 235 ~~l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~~ 272 (281)
T 3juk_A 235 RTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKKR 272 (281)
T ss_dssp HHHHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhch
Confidence 77777779999999999999999999999999988643
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=157.87 Aligned_cols=154 Identities=19% Similarity=0.329 Sum_probs=126.8
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
+.+||+++|+.+..+++ +++|+|++||.+++.++.++++.|+++++++++++.++++ +..||++..| +++|
T Consensus 106 ~~~G~~~al~~a~~~~~------~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d-~g~v 176 (269)
T 4ecm_A 106 KAGGIAQALGLCEDFVG------NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVDD--PERFGVANIQ-NRKI 176 (269)
T ss_dssp SCCCHHHHHHTTHHHHT------TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEECSC--GGGSEEEEEE-TTEE
T ss_pred ccCcHHHHHHHHHHhcC------CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEECCC--CCCceEEEEc-CCEE
Confidence 45799999999999986 3899999999999999999999999999999999988876 6789999887 5999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC-Ccch-hhcccccccccCceEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-ANDF-GSEIIPASANEQFLKA 181 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~-~~~~-~~~~l~~~i~~~~I~~ 181 (360)
+.|.|||..+. +.++++|+|+|++++|+. +++..+. ..++ ..++++.+++++++.+
T Consensus 177 ~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~~-l~~~~~~~~ge~~l~d~l~~l~~~g~v~~ 234 (269)
T 4ecm_A 177 IEIEEKPKEPK---------------------SSYAVTGIYLYDSKVFSY-IKELKPSARGELEITDINNWYLKRGVLTY 234 (269)
T ss_dssp EEEEESCSSCS---------------------CSEEEEEEEEECTTHHHH-HTSCCBCTTSCBCHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCC---------------------CcEEEEEEEEECHHHHHh-hhhcCCCCCCeeeHHHHHHHHHHcCCEEE
Confidence 99999986432 468999999999999864 4443211 1111 2456667777779999
Q ss_pred EEeCCceeecCCHHHHHHHHHHhhcCC
Q 018109 182 YLFNDYWEDIGTIRSFFEANLALTAHP 208 (360)
Q Consensus 182 ~~~~g~w~digtp~~~~~a~~~~l~~~ 208 (360)
+..+++|.|||||++|.++++.++...
T Consensus 235 ~~~~~~~~dIgt~~dl~~a~~~l~~~~ 261 (269)
T 4ecm_A 235 NEMSGWWTDAGTHVSLQRANALARDIN 261 (269)
T ss_dssp EECCSCEEECSSHHHHHHHHHHTTTCC
T ss_pred EEeCCEEEeCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999887654
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-19 Score=164.86 Aligned_cols=171 Identities=9% Similarity=0.057 Sum_probs=122.5
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC-HHHHHHHHHH---cCCcEEEEEeecCCCCCCcc-----cE
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ---SGADITISCLPMDDSRASDF-----GL 94 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d-l~~ll~~h~~---~~a~~tll~~~~~~~~~~~~-----g~ 94 (360)
.++||++||+++.++++ ++|+|++||.+++.+ +++|+++|++ +++++++++.+++++ .+.| |+
T Consensus 99 ~~~Gt~~al~~a~~~i~-------~~~lV~~gD~l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~-~~~~g~~~~G~ 170 (303)
T 3pnn_A 99 KPWGTNHAVLMGRDAIR-------EPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNT-LSESGGVSRGV 170 (303)
T ss_dssp SCCCHHHHHHTTTTTCC-------SCEEEEESSCBCCHHHHHHHHHHHHTTTTCSSEEEEEEEEGGGS-CBTTBCEEEEE
T ss_pred ccCCcHHHHHHHHHhcC-------CCEEEEECCeecCHHHHHHHHHHHHHhccccCceEEEEEECCCc-cCccCceeeee
Confidence 46799999999999884 799999999999987 8999999986 568899999988763 1556 68
Q ss_pred EEECCCCceEEEEecCCcccccc-ccccccccccccccc-cccCceeeeeEEEEeHHHHHHHHH-------hhCCC-Ccc
Q 018109 95 MKINNEGRVLSFSEKPKGKDLKA-MAVDTTVLGLSKQEA-EEKPYIASMGVYLFKKEILLNLLR-------WRFPT-AND 164 (360)
Q Consensus 95 v~~d~~g~V~~~~ekp~~~~~~~-~~i~~~~~~~~~~~~-~~~~~~~~~GIyifs~~vl~~ll~-------~~~~~-~~~ 164 (360)
+.+|++|+|++|.|||+...... +.... ...+.. ...+.++++|+|+|++++|..+.+ +..+. ...
T Consensus 171 v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~----~~g~~~~~~~~~~i~~GiY~f~~~~~~~l~~~~~~~l~~~~~~~~~e 246 (303)
T 3pnn_A 171 CQVDEKHLLTGVVERTGIERTDGTISFRD----ETGKICTLAEDAPVSMNMWGFTPDYFDYSEELFINFLNAHGQEPKSE 246 (303)
T ss_dssp EEECTTSBEEEEEEEEEEEEETTEEEEEC----TTSCEEEECTTCEEEEEEEEECTHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred EeeCCCCcEEEEEECCCCccccccccccc----cccccccCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHhcCCCcCCc
Confidence 88888899999999996531000 00000 000000 002578999999999999976532 11111 111
Q ss_pred -hhhcccccccccC--ceEEEEeCCceeecCCHHHHHHHHHHhhc
Q 018109 165 -FGSEIIPASANEQ--FLKAYLFNDYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 165 -~~~~~l~~~i~~~--~I~~~~~~g~w~digtp~~~~~a~~~~l~ 206 (360)
...+.++.+++++ ++.+|+.+++|+|+|||++|.++++.+..
T Consensus 247 ~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~ 291 (303)
T 3pnn_A 247 FFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRE 291 (303)
T ss_dssp CCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHH
T ss_pred EEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHH
Confidence 1234556666655 79999999999999999999999987754
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.2e-17 Score=151.98 Aligned_cols=156 Identities=20% Similarity=0.310 Sum_probs=120.5
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeec--------CHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEE
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--------DYMDFVQNHRQSGADITISCLPMDDSRASDFGLM 95 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~--------dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v 95 (360)
+.+||+++|+++.+++.+ ++|+|++||.+++. +++++++.|++.++ +++++.++++ +..||++
T Consensus 111 ~~~Gt~~al~~a~~~~~~------~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~--~~~yg~v 181 (302)
T 2e3d_A 111 LAKGLGHAVLCAHPVVGD------EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-SQIMVEPVAD--VTAYGVV 181 (302)
T ss_dssp SCCCHHHHHHHTHHHHCS------SCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-EEEEEEECSC--GGGSEEE
T ss_pred ccCCHHHHHHHHHHHcCC------CcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC-cEEEEEEccC--CCCccEE
Confidence 457999999999999863 79999999998873 79999999998887 7777777654 6789998
Q ss_pred EEC----CCC---ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCC-cch-h
Q 018109 96 KIN----NEG---RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-NDF-G 166 (360)
Q Consensus 96 ~~d----~~g---~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~-~~~-~ 166 (360)
..+ ++| +|..|.|||..... .+.++++|+|+|++++|+. +++..+.. ..+ .
T Consensus 182 ~~~~~~~~~g~~~~v~~~~ekp~~~~~-------------------~~~~~~~Giyi~~~~~l~~-l~~~~~~~~~~~~l 241 (302)
T 2e3d_A 182 DCKGVELAPGESVPMVGVVEKPKADVA-------------------PSNLAIVGRYVLSADIWPL-LAKTPPGAGDEIQL 241 (302)
T ss_dssp ECTTCCCCTTCEEEECEEEESCCTTTC-------------------SCSEEEEEEEEECTTHHHH-HTCCCC----CCCH
T ss_pred EecccccCCCCceeEEEEEECCCCCcc-------------------ccceEEEEEEEECHHHHHH-HHhhCCCCCCceeh
Confidence 763 456 89999999864221 2468999999999998864 44432210 011 2
Q ss_pred hcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhhcCC
Q 018109 167 SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 208 (360)
Q Consensus 167 ~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~ 208 (360)
.+.++.+++++++.+|+++++|.|+|||++|.++++.++...
T Consensus 242 ~d~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~~~~ 283 (302)
T 2e3d_A 242 TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRH 283 (302)
T ss_dssp HHHHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhcC
Confidence 355666666669999999999999999999999997776544
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-17 Score=152.87 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=105.2
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeee---cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECC-
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR---MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN- 99 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~---~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~- 99 (360)
+.+||+++|+.+.++++ +++|+|++||.+++ .+++++++.|++.++ .++++.+++...+..||++..++
T Consensus 115 ~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~ 187 (297)
T 2ux8_A 115 EPMGLGHAVWCARDIVG------DEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQ 187 (297)
T ss_dssp SCCCHHHHHHTTHHHHC------SSCEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC-----------CCCCCCB
T ss_pred CCCChHHHHHHHHHHcC------CCcEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEEEecCcccCCCCCeEEeccc
Confidence 45799999999999986 38999999999988 569999999998876 56766666433367899887653
Q ss_pred -CC--ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCC-cch-hhccccccc
Q 018109 100 -EG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-NDF-GSEIIPASA 174 (360)
Q Consensus 100 -~g--~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~-~~~-~~~~l~~~i 174 (360)
++ +|..|.|||..... .+.++++|+|+|++++|+. +++..+.. ..+ ..+.++.++
T Consensus 188 ~~~~~~v~~~~ekp~~~~~-------------------~~~~~~~Giyi~~~~~l~~-l~~~~~~~~~~~~l~d~i~~l~ 247 (297)
T 2ux8_A 188 DGVLTEVKGLVEKPAPGTA-------------------PSNLSVIGRYILQPEVMRI-LENQGKGAGGEIQLTDAMQRMI 247 (297)
T ss_dssp CSSEEEC---------------------------------CCCEEEEEEECTHHHHH-HHHTC--------CCTTGGGGT
T ss_pred CCCceeEEEEEECCCCCCC-------------------CccEEEEEEEEECHHHHHH-HHhhCCCCCCeeEHHHHHHHHH
Confidence 45 89999999863211 1468899999999998865 45432210 111 245677777
Q ss_pred ccCceEEEEeCCceeecCCHHHHHHHHHHhhcCCC
Q 018109 175 NEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPP 209 (360)
Q Consensus 175 ~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~~ 209 (360)
+++++.+|+++++|.|||||++|.+++..++...+
T Consensus 248 ~~~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~~~ 282 (297)
T 2ux8_A 248 GDQPFHGVTFQGTRYDCGDKAGFIQANLAVALSRP 282 (297)
T ss_dssp TTSCEEEEECSSEEEETTSHHHHHHHHHHHHHHCT
T ss_pred hcCCEEEEEecceEEeCCCHHHHHHHHHHHHhcCh
Confidence 77799999999999999999999999988776543
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=144.86 Aligned_cols=148 Identities=21% Similarity=0.309 Sum_probs=120.4
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
.+||+++|+.+.+++.. +++|++++||.+++.++.++++.|+++++++|+... .. +..||++..| +|+|.
T Consensus 105 ~~gt~~al~~a~~~~~~-----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~~--~~--~~~~g~v~~~-~g~v~ 174 (259)
T 1tzf_A 105 SSMTGGRLKRVAEYVKD-----DEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT--FP--PGRFGALDIQ-AGQVR 174 (259)
T ss_dssp SCCHHHHHHHTGGGTTT-----SSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE--CC--CCCSEEEEEE-TTEEE
T ss_pred ccCcHHHHHHHHHhcCC-----CCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEEe--cC--CCCccEEEEc-CCEEE
Confidence 46999999999998842 478999999999999999999999988888877543 22 5679988887 88999
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEe
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF 184 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~ 184 (360)
.|.|||... ..++++|+|+|++++|.. +++ ...++..+.++.+++++++.+|+.
T Consensus 175 ~~~ekp~~~----------------------~~~~~~Giy~~~~~~l~~-l~~---~~~~~~~~~i~~~~~~~~v~~~~~ 228 (259)
T 1tzf_A 175 SFQEKPKGD----------------------GAMINGGFFVLNPSVIDL-IDN---DATTWEQEPLMTLAQQGELMAFEH 228 (259)
T ss_dssp EEEESCSCC----------------------SCCEECCCEEECGGGGGG-CCS---TTCCTTTHHHHHHHHTTCEEEEEE
T ss_pred EEEecCCCC----------------------CceEEEEEEEeCHHHHHh-hcc---cccccHHHHHHHHHHcCCEEEEEe
Confidence 999998642 358899999999998853 322 122344567777777779999999
Q ss_pred CCceeecCCHHHHHHHHHHhhcCC
Q 018109 185 NDYWEDIGTIRSFFEANLALTAHP 208 (360)
Q Consensus 185 ~g~w~digtp~~~~~a~~~~l~~~ 208 (360)
+++|.|+|||++|.++++.++...
T Consensus 229 ~~~~~dI~t~~d~~~a~~~~~~~~ 252 (259)
T 1tzf_A 229 PGFWQPMDTLRDKVYLEGLWEKGK 252 (259)
T ss_dssp CSCEEECCSHHHHHHHHHHHHTTC
T ss_pred CcEEEeCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999888644
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.9e-17 Score=149.25 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=120.1
Q ss_pred CCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEe-------------ceE
Q 018109 210 MFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK-------------DTM 274 (360)
Q Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~-------------~~~ 274 (360)
+++++++.+.+++++.|+|++++.+ ++.||++|.|. ++.|. ++.||++|.|++++.|+ ..+
T Consensus 9 p~a~I~~~a~Ig~~v~I~~~~~I~~----~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v 84 (266)
T 3r0s_A 9 PSAVIEEGAQLGDDVVIEAYAYVSK----DAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGV 84 (266)
T ss_dssp TTCEECTTCEECTTCEECTTCEECT----TCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEE
T ss_pred CCCEECCCCEECCCCEECCCCEECC----CCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceE
Confidence 3556677777777777777777754 77888888888 77776 79999999999999996 578
Q ss_pred EECCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----E
Q 018109 275 MLGADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----V 347 (360)
Q Consensus 275 ~~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ 347 (360)
.+|++..+.+ +++++++..+++.+.||++|.|. ++.|+++|.||+++.+++.+.+.+++.|+|+++|+.+++ .
T Consensus 85 ~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~ 164 (266)
T 3r0s_A 85 VIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVK 164 (266)
T ss_dssp EECTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred EECCCCEECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCcE
Confidence 8888877777 77777765555569999999997 799999999999999999999998999999999998875 5
Q ss_pred EcCCcEeCCCccC
Q 018109 348 ILKNSVITDGFVI 360 (360)
Q Consensus 348 ig~~~~i~~g~~i 360 (360)
||+++.|+++++|
T Consensus 165 Ig~~a~Vg~~s~V 177 (266)
T 3r0s_A 165 VGEGCMIAGASAL 177 (266)
T ss_dssp ECTTCEECSSCBB
T ss_pred ECCCCEEccCCeE
Confidence 6777777777764
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-17 Score=149.72 Aligned_cols=145 Identities=16% Similarity=0.165 Sum_probs=114.5
Q ss_pred CccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEe------------ceEEEC
Q 018109 212 SFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK------------DTMMLG 277 (360)
Q Consensus 212 ~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~------------~~~~~~ 277 (360)
+++++.+.+.+++.|+++|.+.+ ++.||++|.|+ ++.|. ++.||++|.|++++.|+ ..+++|
T Consensus 8 a~I~~~a~Ig~~~~Ig~~~~I~~----~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG 83 (270)
T 1j2z_A 8 AIISPKAEINKGVEIGEFCVIGD----GVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG 83 (270)
T ss_dssp CEECTTSEECTTCEECTTCEECT----TCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred CEECCCCEECCCCEECCCCEECC----CCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEEC
Confidence 34444444444444545444432 78899999998 78886 89999999999999995 577888
Q ss_pred Ccccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EEcC
Q 018109 278 ADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VILK 350 (360)
Q Consensus 278 ~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig~ 350 (360)
++..+++ ++|++++..+++.+.||++|.|. +++|+++|.||+++.+.+...+.+++.|+|+++|+.+++ .||+
T Consensus 84 ~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~IG~ 163 (270)
T 1j2z_A 84 EDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAK 163 (270)
T ss_dssp SSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECT
T ss_pred CCCEECCCeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCcEeCC
Confidence 8877777 77888766554459999999997 899999999999999999999988999999999988875 5677
Q ss_pred CcEeCCCccC
Q 018109 351 NSVITDGFVI 360 (360)
Q Consensus 351 ~~~i~~g~~i 360 (360)
++.|+++++|
T Consensus 164 ~a~Ig~~s~V 173 (270)
T 1j2z_A 164 GCMIAGKSAL 173 (270)
T ss_dssp TCEECTTCEE
T ss_pred ceEEecCcEe
Confidence 8888887763
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.2e-17 Score=147.78 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=118.1
Q ss_pred CCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEE-------------eceE
Q 018109 210 MFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHL-------------KDTM 274 (360)
Q Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i-------------~~~~ 274 (360)
+++++++.+.+++++.|+|++++.+ ++.||++|.|. ++.|. ++.||++|.|++++.| ...+
T Consensus 5 p~a~I~~~a~ig~~v~I~~~~~I~~----~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v 80 (259)
T 3hsq_A 5 PTAIIDPKAELHESVEVGPYSIIEG----NVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKT 80 (259)
T ss_dssp TTCEECTTCEECTTCEECTTCEECS----SCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCE
T ss_pred CCcEECCCCEECCCCEECCCCEECC----CCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcE
Confidence 3566777777777777777777744 77888888888 77776 5999999999999999 6788
Q ss_pred EECCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----E
Q 018109 275 MLGADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----V 347 (360)
Q Consensus 275 ~~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ 347 (360)
.+|++..+.+ ++++++..+ +..+.||++|.|. ++.|+++|.||+++.+++.+.+.+++.|+|+++|+.+++ .
T Consensus 81 ~IG~~~~Ig~~~~I~~~~~~-~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~ 159 (259)
T 3hsq_A 81 VIGDHNIFREYSNIHKGTKE-DSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCF 159 (259)
T ss_dssp EECSSCEECTTCEEECCSBT-TBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCE
T ss_pred EECCCcEECCCCEECCCccC-CCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCCE
Confidence 8888877777 667766553 2349999999997 799999999999999999999988999999999998875 5
Q ss_pred EcCCcEeCCCccC
Q 018109 348 ILKNSVITDGFVI 360 (360)
Q Consensus 348 ig~~~~i~~g~~i 360 (360)
||+++.|+++++|
T Consensus 160 Ig~~~~Vg~~s~V 172 (259)
T 3hsq_A 160 VGDYSMVAGLAKV 172 (259)
T ss_dssp ECTTCEECSSEEE
T ss_pred ECCCCEECCCCEE
Confidence 6777777777654
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=148.47 Aligned_cols=161 Identities=20% Similarity=0.286 Sum_probs=120.8
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeee--cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEEC---
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN--- 98 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~--~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d--- 98 (360)
+.+||+++|+.+..++.+ ..+.|+|++||.+++ .+++++++.|++.++ .++++.+++.+.+..||++..+
T Consensus 114 ~~~Gt~~al~~a~~~l~~----~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~~ 188 (323)
T 2pa4_A 114 KPLGLGHAVGLAESVLDD----DEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADT 188 (323)
T ss_dssp SCCCHHHHHHTTGGGSCS----SCCEEEEECTTEEEESSCHHHHHHHHHHTTCS-EEEEEEECCGGGGGGSEEEEEEECC
T ss_pred ccCCcHHHHHHHHHHhcC----CCCeEEEEeCCcccCchHHHHHHHHHHHhcCC-cEEEEEEecccccCCccEEEeCCcc
Confidence 457999999999988853 113399999999887 569999999988776 5677776653335789998876
Q ss_pred -CCC--ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCC-cch-hhcccccc
Q 018109 99 -NEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-NDF-GSEIIPAS 173 (360)
Q Consensus 99 -~~g--~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~-~~~-~~~~l~~~ 173 (360)
+++ +|..|.|||..... .+.+.++|+|+|++++|..+ ++..+.. ..+ ..+.++.+
T Consensus 189 ~~~~~~~V~~~~Ekp~~~~~-------------------~~~~~~~GiY~~~~~~~~~l-~~~~~~~~ge~~l~d~i~~l 248 (323)
T 2pa4_A 189 KDSDVKKVKGMVEKPAIEDA-------------------PSRLAATGRYLLDRKIFDAL-RRITPGAGGELQLTDAIDLL 248 (323)
T ss_dssp SSTTEEEEEEEEESCCTTTC-------------------SCSEEEEEEEEEETHHHHHH-HHCCCCGGGCCCHHHHHHHH
T ss_pred cCCCceeEEEEEECCCCccc-------------------cccEEEEEEEEECHHHHHHH-HhhCCCCCCeEeHHHHHHHH
Confidence 454 99999999964221 24688999999999988654 5532221 011 14566666
Q ss_pred ccc-CceEEEEeCCceeecCCHHHHHHHHHHhhcCCC
Q 018109 174 ANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPP 209 (360)
Q Consensus 174 i~~-~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~~ 209 (360)
+++ .++.+|+++++|.|||||++|.++++.++...+
T Consensus 249 ~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~~~~ 285 (323)
T 2pa4_A 249 IDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSHP 285 (323)
T ss_dssp HHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHHTCT
T ss_pred HHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhhcCh
Confidence 665 789999999999999999999999988876543
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=147.23 Aligned_cols=149 Identities=14% Similarity=0.161 Sum_probs=117.7
Q ss_pred CccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec------------eEE
Q 018109 212 SFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD------------TMM 275 (360)
Q Consensus 212 ~~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~------------~~~ 275 (360)
..+++++.+.+++.+++++.| ..+.|. ++.||++|.|. +++|. +++||++|.|++++.|+. .++
T Consensus 23 ~~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~ 102 (283)
T 4eqy_A 23 SRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLV 102 (283)
T ss_dssp CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEE
T ss_pred cccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEE
Confidence 445666666666666666666 344543 78999999999 78886 799999999999999953 677
Q ss_pred ECCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EE
Q 018109 276 LGADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VI 348 (360)
Q Consensus 276 ~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~i 348 (360)
+|++..+.+ ++|++++..+++.+.||++|.|. ++.|+++|.||+++.+++.+.+.++++|+|+++|+.+++ +|
T Consensus 103 IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~I 182 (283)
T 4eqy_A 103 IGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRI 182 (283)
T ss_dssp ECSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ECCCcccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEE
Confidence 888777766 77777766655669999999997 799999999999999999999988999999999998875 56
Q ss_pred cCCcEeCCCccC
Q 018109 349 LKNSVITDGFVI 360 (360)
Q Consensus 349 g~~~~i~~g~~i 360 (360)
|+++.|+++++|
T Consensus 183 g~~~vvg~~s~V 194 (283)
T 4eqy_A 183 GAHSMLGGASAL 194 (283)
T ss_dssp CTTCEECTTCEE
T ss_pred CCCcEECCCCeE
Confidence 777777777653
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.4e-16 Score=141.83 Aligned_cols=168 Identities=12% Similarity=0.088 Sum_probs=118.1
Q ss_pred CCcEEEeeCcccCCC--------------------CCCccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceee-ecCH
Q 018109 5 TGNSQVLAATQTPGE--------------------AGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMDY 63 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~--------------------~~~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~-~~dl 63 (360)
.|+.+++++.++..+ ..+++.+|||+||++|.+++.+.....+++|+|++||+++ +.++
T Consensus 44 ~gi~~iivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~ 123 (255)
T 4evw_A 44 FASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVF 123 (255)
T ss_dssp TTTSCEEEEEESSTTHHHHHHHHHHHHTCSSEEEEEESSCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCC
T ss_pred CCCceEEEEECchhhhHHHHHHHHHHcCCCCceEEEeCCCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchh
Confidence 578888888887543 0123458999999999999920000014789999999988 5666
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCC--ceEEEEecCCccccccccccccccccccccccccCceeee
Q 018109 64 MDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASM 141 (360)
Q Consensus 64 ~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g--~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 141 (360)
.++ .+++++++++.++++ + +||++..|++| +|++|.||+.. +.++++
T Consensus 124 ~~~-----~~~~~~~i~~~~~~~--p-~yG~v~~d~~g~~~V~~i~EK~~~-----------------------s~~~~~ 172 (255)
T 4evw_A 124 PDI-----SQHSDGYLEVFQGGG--D-NWSFAKPEHAGSTKVIQTAEKNPI-----------------------SDLCST 172 (255)
T ss_dssp CGG-----GGSSSEEEEEEECCS--S-CSCEEEESSTTCCBEEEEESSSCS-----------------------SSEEEE
T ss_pred HHH-----hhcCCcEEEEEecCC--C-ceeEEEECCCCCeEEEEEEeccCc-----------------------cCcEEE
Confidence 553 356778999988876 4 89999998888 99999999432 468999
Q ss_pred eEEEEeHH-HHHHHHHhh-CCCC-----cc-hhhcccccccc-cCceEEEEeC-CceeecCCHHHHHHHHHH
Q 018109 142 GVYLFKKE-ILLNLLRWR-FPTA-----ND-FGSEIIPASAN-EQFLKAYLFN-DYWEDIGTIRSFFEANLA 203 (360)
Q Consensus 142 GIyifs~~-vl~~ll~~~-~~~~-----~~-~~~~~l~~~i~-~~~I~~~~~~-g~w~digtp~~~~~a~~~ 203 (360)
|+|+|++. .|...+.+. .... .. +..++++.+++ +.++.+|+++ ++|+|+|||++|.++...
T Consensus 173 GiY~f~~~~~~~~~l~~~i~~~~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~ 244 (255)
T 4evw_A 173 GLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQ 244 (255)
T ss_dssp EEEEESCHHHHHHHHHHHHTSCGGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC
T ss_pred eEEEECcHHHHHHHHHHHHhcccccccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhc
Confidence 99999986 343333221 1111 01 12345555555 4679999985 999999999999988643
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-16 Score=143.66 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=111.3
Q ss_pred CccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEe------------ceEEEC
Q 018109 212 SFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK------------DTMMLG 277 (360)
Q Consensus 212 ~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~------------~~~~~~ 277 (360)
+.+++.+.+.+++.|++++++.+ ++.||++|.|. ++.|. ++.||++|.|++++.|+ ..+++|
T Consensus 14 a~i~~~a~Ig~~v~Ig~~~~I~~----~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG 89 (265)
T 4e6u_A 14 AIIDPSAVIASDVQIGPYCIIGP----QVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIG 89 (265)
T ss_dssp CEECTTCEECTTCEECTTCEECT----TEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEEC
T ss_pred CEECCCCEECCCCEECCCeEECC----CCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEEC
Confidence 34444455555555555555433 78888888888 77776 69999999999999994 377888
Q ss_pred Ccccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EEcC
Q 018109 278 ADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VILK 350 (360)
Q Consensus 278 ~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig~ 350 (360)
++..+.+ +++++++..+...+.||++|.|. ++.|+++|.||+++.+.+.+.+.++++|+|+++|+.+++ .||+
T Consensus 90 ~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~ 169 (265)
T 4e6u_A 90 NNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDS 169 (265)
T ss_dssp SSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECT
T ss_pred CCeEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEECC
Confidence 8766666 67777766555569999999997 788999999999999999888888899999999988875 5677
Q ss_pred CcEeCCCccC
Q 018109 351 NSVITDGFVI 360 (360)
Q Consensus 351 ~~~i~~g~~i 360 (360)
++.|+++++|
T Consensus 170 ~~~i~~~svV 179 (265)
T 4e6u_A 170 YSMIGGASLI 179 (265)
T ss_dssp TCEECTTCEE
T ss_pred CCEEcCCCEE
Confidence 7777777764
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.3e-16 Score=145.55 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=81.7
Q ss_pred eeEEecCeEECCCCEEec-------------eEEECCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECC
Q 018109 255 HSVVGIRSRINANVHLKD-------------TMMLGADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGK 319 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~-------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~ 319 (360)
+++||+++.|++++.|+. .+.+|++..+++ ++|++++..++ ++.||++|.|. +++|+++|.||+
T Consensus 77 ~~~IG~~~~Ig~~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~-~~~IG~~~~I~~~~~I~~~~~IG~ 155 (305)
T 3t57_A 77 YTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSD-KTVIGDNNLIMGSCHIAHDCKIGD 155 (305)
T ss_dssp EEEECSSCEECTTCEEEECCCCTTCCTTCCEEEEECSSCEECTTCEEECCSSTTC-CEEECSSCEECTTCEECTTCEECS
T ss_pred ceEECCceEECCccEeCccccccceecCCCceEEECCCcccCceEEEeecccccC-ccEEccCccccceEEEeCceEeCC
Confidence 355666666666666632 367777766666 66666654332 39999999996 899999999999
Q ss_pred CcEEecCCCcccccccCCceEEeCCeE-----EEcCCcEeCCCccC
Q 018109 320 NVIIANSEGIQEADRSAEGFYIRSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~i 360 (360)
+|.+.+...+.++++|+|+++|+.+++ .||++++|++|++|
T Consensus 156 ~~~i~~~~~i~g~v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V 201 (305)
T 3t57_A 156 RNIFANNTLLAGHVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVV 201 (305)
T ss_dssp SCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ceEECCCcccCCCCEECCceEEcCCCEEcCCeEECCCCEEcCCCeE
Confidence 999999999999999999999998874 67888888888864
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=140.75 Aligned_cols=146 Identities=12% Similarity=0.135 Sum_probs=107.9
Q ss_pred CCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec------------eEEECC
Q 018109 215 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD------------TMMLGA 278 (360)
Q Consensus 215 ~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~------------~~~~~~ 278 (360)
++.+.+.+++.+++++.+ +.+.|. ++.||++|.|+ ++.|. ++.||++|.|++++.|+. .+.+|+
T Consensus 9 ~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~ 88 (262)
T 2qia_A 9 HPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGD 88 (262)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECS
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECC
Confidence 334444444444444444 233332 78889999988 77776 799999999999999974 677787
Q ss_pred cccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EEcCC
Q 018109 279 DFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VILKN 351 (360)
Q Consensus 279 ~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig~~ 351 (360)
+..+.+ +.+++++..+..++.||+++.|. ++.|.++|.||+++.+.+...+.++++|+|+++|+.+++ .||++
T Consensus 89 ~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~~ 168 (262)
T 2qia_A 89 RNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAH 168 (262)
T ss_dssp SCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred CceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCCEECCC
Confidence 765555 55665544443458999999997 788999999999999999888888889999999988774 56788
Q ss_pred cEeCCCccC
Q 018109 352 SVITDGFVI 360 (360)
Q Consensus 352 ~~i~~g~~i 360 (360)
+.|+++++|
T Consensus 169 ~~ig~~s~V 177 (262)
T 2qia_A 169 VMVGGCSGV 177 (262)
T ss_dssp CEECSSCEE
T ss_pred CEEccCCEE
Confidence 888888764
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.9e-16 Score=144.36 Aligned_cols=161 Identities=19% Similarity=0.317 Sum_probs=104.6
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceee-ecC-HHHHHHH---HHHcCCcEEEEEeecCCCCCCcccEEEEC
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMD-YMDFVQN---HRQSGADITISCLPMDDSRASDFGLMKIN 98 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~-~~d-l~~ll~~---h~~~~a~~tll~~~~~~~~~~~~g~v~~d 98 (360)
+++||+++|+.+..++.. ++.|+|++||.++ +.+ |.++++. |.++++++|+++.+... +..||++..|
T Consensus 86 ~~~gt~~al~~a~~~l~~-----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~g~i~~d 158 (308)
T 2qh5_A 86 LSKNTANAIALSALMSDK-----EDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKP--NTEFGYIESP 158 (308)
T ss_dssp SCCCHHHHHHHHHHTSCT-----TSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSC--CTTSEEEECS
T ss_pred CCCChHHHHHHHHHHhCC-----CCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCC--CCCceEEEEC
Confidence 347999999999988852 2469999999987 777 8999988 77778888888887655 5679999887
Q ss_pred CCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCC----------------
Q 018109 99 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA---------------- 162 (360)
Q Consensus 99 ~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~---------------- 162 (360)
++++|+.|.|||.....+. .....++++++|+|+|++++|...+++..+..
T Consensus 159 ~~~~V~~~~Ekp~~~~~~~-------------~~~~g~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~ 225 (308)
T 2qh5_A 159 NGLDVKRFIEKPSLDKAIE-------------FQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENAYF 225 (308)
T ss_dssp SSSBCSEEEESCCHHHHHH-------------HHHHCCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHHHGGGCEEECC
T ss_pred CCCEEEEEEECCChHHHHH-------------HhhcCCeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHHHhhccccccc
Confidence 6789999999997532100 00001468999999999998644444332110
Q ss_pred --cch---hhccccc---------ccc-cCceEEEEeCCceeecCCHHHHHHHHHHh
Q 018109 163 --NDF---GSEIIPA---------SAN-EQFLKAYLFNDYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 163 --~~~---~~~~l~~---------~i~-~~~I~~~~~~g~w~digtp~~~~~a~~~~ 204 (360)
..+ ..+.++. +++ +.++.+++.+++|.|+|||++|.+++...
T Consensus 226 ~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~ 282 (308)
T 2qh5_A 226 FEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANE 282 (308)
T ss_dssp SSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC--------------
T ss_pred cchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcC
Confidence 011 1122321 455 47899999999999999999999987543
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-15 Score=137.86 Aligned_cols=152 Identities=20% Similarity=0.351 Sum_probs=119.2
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCcee-eecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCc
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 102 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i-~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 102 (360)
.++||+++++.+.+++.+ +++++++||.+ .+.++.++++.|.++++.++++..++++ +.+||++..|++++
T Consensus 84 ~~~G~~~al~~a~~~i~~------~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d--p~~~g~v~~d~~g~ 155 (293)
T 1fxo_A 84 SPDGLAQAFLIGESFIGN------DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQGGK 155 (293)
T ss_dssp SCCCGGGHHHHTHHHHTT------SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSC--GGGSEEEEECTTSC
T ss_pred CCCCHHHHHHHHHHHhCC------CCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEECCC--cccCcEEEECCCCc
Confidence 357999999999999863 78999999984 5678999999998777778888888776 66899999998899
Q ss_pred eEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC-Ccch-hhcccccccccCceE
Q 018109 103 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-ANDF-GSEIIPASANEQFLK 180 (360)
Q Consensus 103 V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~-~~~~-~~~~l~~~i~~~~I~ 180 (360)
+..|.|||..+. +.+.++|+|+|++++|..+ ++..+. ...+ ..+.++.+++.+++.
T Consensus 156 v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~~-~~~~~~~~ge~~~td~~~~~l~~g~~~ 213 (293)
T 1fxo_A 156 AISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVDIA-RDLKPSPRGELEITDVNRAYLERGQLS 213 (293)
T ss_dssp EEEEEESCSSCS---------------------SSEEEEEEEEECTTHHHHH-HHCCCCTTSSCCHHHHHHHHHHTTCEE
T ss_pred EEEEEECCCCCC---------------------CCeEEEEEEEEcHHHHHHH-HhcCcccCCceeHHHHHHHHHhcCCeE
Confidence 999999986432 4689999999999998754 443221 1111 135556666677788
Q ss_pred EEEeC-Cc-eeecCCHHHHHHHHHHhh
Q 018109 181 AYLFN-DY-WEDIGTIRSFFEANLALT 205 (360)
Q Consensus 181 ~~~~~-g~-w~digtp~~~~~a~~~~l 205 (360)
++... ++ |.|+|||++|.+++..+.
T Consensus 214 v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 214 VEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp EEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred EEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 88775 75 999999999999987764
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=135.68 Aligned_cols=151 Identities=22% Similarity=0.351 Sum_probs=117.8
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
++||+++++.+.+++.+ +++++++||. +.+.++.++++.|.++++.++++..++++ +.+||++..|++++|
T Consensus 86 ~~G~~~al~~a~~~i~~------~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d--p~~~g~v~~d~~g~v 157 (295)
T 1lvw_A 86 PRGIADAFIVGKDFIGD------SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRD--PRPFGVVEFDSEGRV 157 (295)
T ss_dssp CCCGGGHHHHTHHHHTT------SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSC--CTTSEEEEECTTSBE
T ss_pred CCChHHHHHHHHHHhCC------CcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEECCC--cccCCEEEECCCCcE
Confidence 47999999999999863 7888888998 45778999999998777778888888877 568999999988999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC-Ccch-hhcccccccccCceEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-ANDF-GSEIIPASANEQFLKA 181 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~-~~~~-~~~~l~~~i~~~~I~~ 181 (360)
+.|.|||..+. +.+.++|+|+|++++|+.+ ++..+. ...+ ..++++.+++.+++.+
T Consensus 158 ~~~~ekp~~~~---------------------s~~~~~Giy~f~~~~l~~~-~~~~~~~~ge~~~td~~~~~l~~g~~~v 215 (295)
T 1lvw_A 158 ISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVEIA-RRIEPSDRGELEITSVNEEYLRMGKLRV 215 (295)
T ss_dssp EEEEESCSSCS---------------------CSEECCSEEEECTTHHHHH-HHCCCCTTSCCCHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCC---------------------CCEEEEEeEEEcHHHHHHH-HhcCCcccCceeHHHHHHHHHHcCCcEE
Confidence 99999986432 4589999999999998754 443221 1111 1345555566677777
Q ss_pred EEeC-Cc-eeecCCHHHHHHHHHHhh
Q 018109 182 YLFN-DY-WEDIGTIRSFFEANLALT 205 (360)
Q Consensus 182 ~~~~-g~-w~digtp~~~~~a~~~~l 205 (360)
+.+. ++ |.|+|||++|.+++..+.
T Consensus 216 ~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 216 ELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp EEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred EEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 7775 64 999999999999987764
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.9e-15 Score=138.32 Aligned_cols=151 Identities=20% Similarity=0.313 Sum_probs=117.8
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCcee-eecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i-~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
++||+++++.+.+++.+ +++++++||.+ .+.++.++++.|.++++.++++..++++ +.+||++..|++++|
T Consensus 86 ~~G~~~al~~a~~~i~~------~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d--p~~yg~v~~d~~g~v 157 (296)
T 1mc3_A 86 PDGLAQAFIIGETFLNG------EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD--PERFGVVEFDDNFRA 157 (296)
T ss_dssp CCCSTHHHHHTHHHHTT------SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSC--CSSSBBCEEETTEEE
T ss_pred CCCHHHHHHHHHHHhCC------CCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEECCC--cccCCEEEECCCCcE
Confidence 57999999999999863 78888889984 5778999999998777778888888877 568999998888999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC-Ccch-hhcccccccccCceEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-ANDF-GSEIIPASANEQFLKA 181 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~-~~~~-~~~~l~~~i~~~~I~~ 181 (360)
..|.|||..+. +.+.++|+|+|++++++.+ ++..+. ...+ ..++++.+++.+++.+
T Consensus 158 ~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~~-~~~~~~~~ge~~~td~~~~~l~~g~~~v 215 (296)
T 1mc3_A 158 ISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVEYA-KQVKPSERGELEITSINQMYLEAGNLTV 215 (296)
T ss_dssp EECCBSCSSCS---------------------CSEEEEEEEECCTHHHHHH-HSCCCCSSSSCCHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCC---------------------CCEEEEEEEEEcHHHHHHH-HhcCccccCCccHHHHHHHHHhcCCeEE
Confidence 99999986442 4689999999999998654 443221 1111 1345555566677888
Q ss_pred EEeC-Cc-eeecCCHHHHHHHHHHhh
Q 018109 182 YLFN-DY-WEDIGTIRSFFEANLALT 205 (360)
Q Consensus 182 ~~~~-g~-w~digtp~~~~~a~~~~l 205 (360)
+.+. ++ |.|+|||++|.+++..+.
T Consensus 216 ~~~~~g~~w~Digt~edl~~a~~~~~ 241 (296)
T 1mc3_A 216 ELLGRGFAWLDTGTHDSLIEASTFVQ 241 (296)
T ss_dssp EECCTTCEEEECCSHHHHHHHHHHHH
T ss_pred EEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 8775 75 999999999999998765
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.9e-16 Score=155.10 Aligned_cols=251 Identities=13% Similarity=0.105 Sum_probs=152.0
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEc----CceeeecCHHHHHHHHHHc--C---------CcEEEEEeecCCCCC
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILS----GDHLYRMDYMDFVQNHRQS--G---------ADITISCLPMDDSRA 89 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~----gD~i~~~dl~~ll~~h~~~--~---------a~~tll~~~~~~~~~ 89 (360)
+++||++++.+.+.+. .++|++ +|...++++.+++..|+++ + +..++.+..+.++-.
T Consensus 123 pL~~a~~i~~~d~~~~--------~t~V~~~~~kpd~~~~~~l~~l~~~h~~~~~g~~~~~~~ig~~~ti~L~~l~d~li 194 (496)
T 3c8v_A 123 PLHDDEVITIKDSFLN--------KTLVHSNSHDPESPEEFTIRNTVAMPYANIHGSLTEGSFIGSFATVDLSTIHNSVV 194 (496)
T ss_dssp ECSSCCEEEEESCEEE--------SCEEESCCCCTTCTTEEEEESCEECTTCEEESCCEESCEECTTCEEESCEEESCEE
T ss_pred chhHhhhHHhhhhcCC--------ceEEeccccCCCCccccchHHHHHHHHHhhcCCcccceEecccceeeHHHHHHHHH
Confidence 5799998665543331 238888 6988888888888888863 2 234555555555211
Q ss_pred CcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcc
Q 018109 90 SDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEI 169 (360)
Q Consensus 90 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~ 169 (360)
..|+.+. .+++..+.++|..... .+......+|.|.++.|..++..
T Consensus 195 ~~~~~~~---~g~i~~~~~~pg~~~i-------------------~~~~~lnf~Y~f~~~~L~~~l~~------------ 240 (496)
T 3c8v_A 195 RYFSYVQ---TGELVGKCVEPGQIWI-------------------KSGDELEFHYSFDKAILDKYISQ------------ 240 (496)
T ss_dssp CTTCEEE---SSEEESCEECTTEEEE-------------------ECTTSEEEEEECCHHHHTTTCBC------------
T ss_pred HHHhhhc---CCceEEeeecCCceec-------------------ccccccceEEEcCHHHHHHHHhh------------
Confidence 4677663 5778877777763210 12233455999999877543211
Q ss_pred cccccccCceEEEEeCCceeec--CCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCceecCceeeceEECCCCE
Q 018109 170 IPASANEQFLKAYLFNDYWEDI--GTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSF 247 (360)
Q Consensus 170 l~~~i~~~~I~~~~~~g~w~di--gtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~ 247 (360)
..+.. .++.|.|+ ..++++.+........ ....+++++.+.+.+.+.+ ++.||++|.
T Consensus 241 ----~~~~n-----~~g~~~Dll~~~~~d~~~i~~~~~~~--------~~~~I~~~a~I~p~a~i~g----~v~IG~~~~ 299 (496)
T 3c8v_A 241 ----EAGSC-----PTGVLMEFVEVRQEDFEEVFASGHMA--------SGAGSASGASVSGYAVIKG----DTVIGENVL 299 (496)
T ss_dssp ----CTTSC-----CBSHHHHHHHTTTHHHHHHHHC----------------CCTTCEECTTSEEES----SCEECTTCE
T ss_pred ----ccCcc-----ccceeeehhccchHHHHHHhhccccc--------cCcccCCCcEECCCcEEeC----CeEECCCCE
Confidence 01111 24455554 4555555442221111 1122333344444443322 678888888
Q ss_pred Ec-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecC
Q 018109 248 IT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 248 i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~ 326 (360)
|+ ++.|.+++||++|.|+++|.|.++++ |++ +.|++++.|.+++||++|.||+++++...
T Consensus 300 I~~~a~I~~v~IG~~~~I~~~~~I~~~vI-G~~------------------~~Ig~~a~I~gv~IGd~v~IG~~a~I~~~ 360 (496)
T 3c8v_A 300 VSQRAYLDNAWMGKGSNAQENCYIINSRL-ERN------------------CVTAHGGKIINAHLGDMIFTGFNSFLQGS 360 (496)
T ss_dssp ECTTCEEEEEEECTTCEECTTCEEEEEEE-EES------------------CEECTTCEEESEEEEETCEECTTCEEECC
T ss_pred ECCCcEEeceEecCCCEECCCceEeceEe-CCC------------------CEECCCcEEcCceECCCcEECCCCEEeCC
Confidence 88 77778899999999999999987655 444 89999999999999999999999999876
Q ss_pred CCcccccccCCceEEeCCeEEE-cCCcEeCCCcc
Q 018109 327 EGIQEADRSAEGFYIRSGVTVI-LKNSVITDGFV 359 (360)
Q Consensus 327 ~~~~~~~~~~~~~~i~~~~~~i-g~~~~i~~g~~ 359 (360)
.. ..++|++++.|+.++++. .+++.|+++++
T Consensus 361 ~~--~~v~IG~~a~IGagsvV~~~~~~~I~~~s~ 392 (496)
T 3c8v_A 361 ES--SPLKIGDGCVVMPHTIIDLEEPLEIPAGHL 392 (496)
T ss_dssp SS--SCEEECTTCEECTTCEEECSSCEEECSSEE
T ss_pred CC--cceEECCCCEECCCCEEecCCCcEeCCCCE
Confidence 21 234566666666665432 14445555443
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.2e-15 Score=140.12 Aligned_cols=157 Identities=20% Similarity=0.263 Sum_probs=110.3
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeec--CH----HHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEE
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--DY----MDFVQNHRQSGADITISCLPMDDSRASDFGLMKI 97 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~--dl----~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~ 97 (360)
+++||+++++.+..++.. ++.++|++||+++.. +| ++++++|+++++.+|+.+.+... ...||++..
T Consensus 82 ~~~gta~ai~~a~~~~~~-----~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~--~~~yG~I~~ 154 (336)
T 2x65_A 82 MKKNTAPACFIGTKLADD-----DEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRP--ETGYGYIEI 154 (336)
T ss_dssp SCCCHHHHHHHHHTTSCT-----TCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSC--CSSSEEEEE
T ss_pred CCCCcHHHHHHHHHhhCC-----CCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccC--CCCceEEEE
Confidence 357999999999876642 467999999997743 44 45556677767878887776654 468999987
Q ss_pred CCC-----CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCc---------
Q 018109 98 NNE-----GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN--------- 163 (360)
Q Consensus 98 d~~-----g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~--------- 163 (360)
+++ ++|..|.|||+...++ +......+++++|+|+|++++|...++...+...
T Consensus 155 ~~~~~~~~~~V~~f~EKp~~~~a~-------------~~~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~ 221 (336)
T 2x65_A 155 GEELEEGVHKVAQFREKPDLETAK-------------KFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPR 221 (336)
T ss_dssp EEEEETTEEEEEEEEESCCHHHHH-------------HHHHHTCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHTTCCTT
T ss_pred CCccCCCccEEEEEEECCChHHHH-------------HHHhcCCeEEEeeeEEEEHHHHHHHHHHHCHHHHHHHHHhhhh
Confidence 654 7899999999864311 0000123689999999999987444444322110
Q ss_pred --chhhccccc---------ccc-cCceEEEEeCCceeecCCHHHHHHH
Q 018109 164 --DFGSEIIPA---------SAN-EQFLKAYLFNDYWEDIGTIRSFFEA 200 (360)
Q Consensus 164 --~~~~~~l~~---------~i~-~~~I~~~~~~g~w~digtp~~~~~a 200 (360)
++..+.++. +++ ..++++++.+++|.|+|||++|.++
T Consensus 222 ~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 222 NFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp CHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred hhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 122333443 344 4789999999999999999999998
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-14 Score=137.03 Aligned_cols=63 Identities=24% Similarity=0.380 Sum_probs=48.2
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EEcCCcEeCCCccC
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~i 360 (360)
+.||+++.|. ++.|+++++||++|.+.+...+.++++||++++|+.+++ .||++++|+++++|
T Consensus 245 t~IG~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~V 313 (372)
T 3pmo_A 245 TLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTMV 313 (372)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECSSEEECTTCEE
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEECCCCEEeeCCEE
Confidence 6666666665 577778888888888888888888888999999988875 46677777777653
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.6e-14 Score=133.30 Aligned_cols=169 Identities=16% Similarity=0.159 Sum_probs=92.4
Q ss_pred eecCCHHHHHHHHHHhhcC-CCCCCccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEE-eeeEEecCeE
Q 018109 189 EDIGTIRSFFEANLALTAH-PPMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSR 263 (360)
Q Consensus 189 ~digtp~~~~~a~~~~l~~-~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~ 263 (360)
+-+.+|...+.....++.. ......+++++.+.+++.+++++.+ ..+.|. ++.||++|.|. ++.| .++.||++|.
T Consensus 74 ~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~ 153 (341)
T 3eh0_A 74 LVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSR 153 (341)
T ss_dssp EECSCHHHHHHHHHHHHCCCCCSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred EEeCCHHHHHHHHHHHhcccCCccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcE
Confidence 4456677655444444433 2334456666666665555555555 334443 45555555554 4444 2344444444
Q ss_pred ECCCCEEec-------------------------------------eEEECCcccchh-HHHHhhhhCCCcceEECCCCe
Q 018109 264 INANVHLKD-------------------------------------TMMLGADFYETD-AEVASLLAEGRVPVGIGENTK 305 (360)
Q Consensus 264 i~~~~~i~~-------------------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~ 305 (360)
|++++.|.. .+++|++-.+.. ++|.++..++ +.||+++.
T Consensus 154 I~~~~~I~~~~~IG~~~~I~~g~~I~~~~fg~~~~~~~~~~i~~~g~v~IGd~v~Ig~~~~I~~~~~~~---~~Ig~~~~ 230 (341)
T 3eh0_A 154 LWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDD---TIIGNGVI 230 (341)
T ss_dssp ECSSCEECTTCEECSSCEECTTCEEEECCSCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSC---EEECTTCE
T ss_pred ECCCcEECCCCEECCccEEcCCcEECCccccccccCCccccccccCcEEECCCcEECCccEeeccccCc---eEeccceE
Confidence 444333332 234443311111 2222222221 55555555
Q ss_pred Ee-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EEcCCcEeCCCccC
Q 018109 306 IK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 306 i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~i 360 (360)
|. ++.|+++++||++|.++....+.++++||++++|+.+++ .||+++.|+++++|
T Consensus 231 I~~~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~V 291 (341)
T 3eh0_A 231 IDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMV 291 (341)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTTCEE
T ss_pred ECCCCEEeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeCCEE
Confidence 55 466777788888888888777788888888888887774 45677777777653
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.1e-14 Score=127.49 Aligned_cols=168 Identities=13% Similarity=0.144 Sum_probs=117.2
Q ss_pred ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcc-----cEE
Q 018109 23 RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDF-----GLM 95 (360)
Q Consensus 23 ~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~-----g~v 95 (360)
++++||++ +..+...++. ...+.|++++||. +...++.++++.|+++++++++++.++++ +..| |.+
T Consensus 71 ~~~~Gt~~-~~~~~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~--~~~~~~p~~g~v 144 (252)
T 3oam_A 71 NHQSGTER-LAEVVAKMAI---PADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIED--EAEVFNPNAVKV 144 (252)
T ss_dssp TCCSHHHH-HHHHHHHTTC---CTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECC--HHHHTCTTSCEE
T ss_pred CCCCcHHH-HHHHHHhcCc---CCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCC--HHHhhCCCceEE
Confidence 45689998 5555556621 0147999999998 44667999999999888899999999887 4556 889
Q ss_pred EECCCCceEEEEecCCccccccccccccccccccccc--cccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhh--cccc
Q 018109 96 KINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA--EEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS--EIIP 171 (360)
Q Consensus 96 ~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~--~~l~ 171 (360)
..|++|+++.|.++|-...... +++++ ....++.++|+|+|++++|..+.... +......+ +.+.
T Consensus 145 v~d~~g~v~~fsr~~i~~~~~~----------~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~-~~~~e~~E~le~lr 213 (252)
T 3oam_A 145 ITDKSGYALYFSRATIPWDRDN----------FAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQ-PSQLEKIECLEQLR 213 (252)
T ss_dssp EECTTSBEEEEESSCSSCCHHH----------HHSSSCCCCSCEEEEEEEEEEETTHHHHHHHSC-CCHHHHHHTCTTHH
T ss_pred EECCCCeEEEEeCCCCCCCCCc----------cccccccccccceEEEEEEEcCHHHHHHHHcCC-CCcccccchhHHHH
Confidence 9999999999999875432100 00000 01257899999999999998765432 22111111 1222
Q ss_pred cccccCceEEEEe-CCceeecCCHHHHHHHHHHhhcC
Q 018109 172 ASANEQFLKAYLF-NDYWEDIGTIRSFFEANLALTAH 207 (360)
Q Consensus 172 ~~i~~~~I~~~~~-~g~w~digtp~~~~~a~~~~l~~ 207 (360)
.+-++.+|.++.. ..+|.|++||++|.++++.+..+
T Consensus 214 ~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 214 VLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp HHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred HHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 2223679999876 45789999999999999877653
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=132.46 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=42.7
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EEcCCcEeCCCcc
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VILKNSVITDGFV 359 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~ 359 (360)
+.||+++.|. ++.|+++|+||++|.++....+.++++||++++|+.+++ .||+++.|+++++
T Consensus 228 t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~ 295 (357)
T 4e79_A 228 TILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSM 295 (357)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEECTTCE
T ss_pred ccccCCcccCCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEEeecCE
Confidence 5555555554 466667777777777777777777788888888887764 4466666666654
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.1e-14 Score=133.51 Aligned_cols=126 Identities=18% Similarity=0.260 Sum_probs=66.4
Q ss_pred CCCceeccCCCCCCcee-cCcee-eceEECCCCEEc-ceEE--------------------eeeEEecCeEECCCCEEe-
Q 018109 216 ATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFI--------------------EHSVVGIRSRINANVHLK- 271 (360)
Q Consensus 216 ~~~~v~~~~~~~~~~~~-~~~~i-~~~~i~~~~~i~-~~~i--------------------~~~~ig~~~~i~~~~~i~- 271 (360)
+...+...+.|+.+|.+ .++.| .++.||++|.|. ++.+ .+++||+++.|++++.|.
T Consensus 138 ~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I~~~~fg~~~~~~~~~~i~~~g~v~IGd~v~Ig~~~~I~~ 217 (341)
T 3eh0_A 138 AGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDR 217 (341)
T ss_dssp TTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTCEEEECCSCEEEETTEEEECCCCCCEEECSSCEECTTCEEEC
T ss_pred CCcEECCCCEECCCcEECCCcEECCCCEECCccEEcCCcEECCccccccccCCccccccccCcEEECCCcEECCccEeec
Confidence 33344444444444444 34444 367777777777 5555 247888888888888886
Q ss_pred ---ceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 272 ---DTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 272 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
+.+++|++-..... ..+.. ++.||++|.|. ++.+..+++||++|.|+..+.+.++..|++++.|+.+.++
T Consensus 218 ~~~~~~~Ig~~~~I~~~---v~I~~---~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~V 291 (341)
T 3eh0_A 218 GALDDTIIGNGVIIDNQ---CQIAH---NVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMV 291 (341)
T ss_dssp CSSSCEEECTTCEECTT---CEECT---TCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTTCEE
T ss_pred cccCceEeccceEECCC---CEEeC---CcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeCCEE
Confidence 44555653000000 00000 03333333333 3334444555666666666666666666666666655543
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=126.51 Aligned_cols=122 Identities=16% Similarity=0.236 Sum_probs=87.6
Q ss_pred cCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-----eeEEecCeEECCCCEEece--------------
Q 018109 214 YDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKDT-------------- 273 (360)
Q Consensus 214 ~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-----~~~ig~~~~i~~~~~i~~~-------------- 273 (360)
.+....+++++.+.+++.+.+ ++.||++|.|+ ++.|. +++||++|.|++++.|...
T Consensus 56 ~~~~~~I~~~~~I~~~a~I~g----~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~ 131 (247)
T 1qre_A 56 EPSAPVIDPTAYIDPQASVIG----EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNI 131 (247)
T ss_dssp SCCCCEECTTCEECTTCEEEE----SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGC
T ss_pred cCCCcEECCCcEECCCCEEeC----CcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccce
Confidence 344556666666666666632 67778888887 66664 2389999999999999753
Q ss_pred ---------EEECCcccchhHHHHhhhhCCCcceEECCCCeEee-eEecCCCEECCCcEEecCCCcccccccCCceEEeC
Q 018109 274 ---------MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRS 343 (360)
Q Consensus 274 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~-~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~ 343 (360)
+++|++ +.|+++|.|.. ++||++|.||+++++.+ ..++++++|+.++.| .
T Consensus 132 ~~~~~~~~~v~IG~~------------------v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV-~ 191 (247)
T 1qre_A 132 VEVDGKEYAVYIGNN------------------VSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAA-I 191 (247)
T ss_dssp EEETTEEESEEECTT------------------CEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEE-E
T ss_pred eeccCccCceEECCC------------------CEECCCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCCEE-C
Confidence 777776 89999999986 99999999999999976 444444444444444 3
Q ss_pred CeEEEcCCcEeCCCccC
Q 018109 344 GVTVILKNSVITDGFVI 360 (360)
Q Consensus 344 ~~~~ig~~~~i~~g~~i 360 (360)
++ .|++++.|++++++
T Consensus 192 ~~-~I~~~~~v~~g~vv 207 (247)
T 1qre_A 192 GV-TIPDGRYIPAGMVV 207 (247)
T ss_dssp SC-EECTTBEECTTCEE
T ss_pred Ce-EeCCCCEECCCCEE
Confidence 32 36788888888754
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=131.54 Aligned_cols=171 Identities=19% Similarity=0.172 Sum_probs=96.8
Q ss_pred ceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecCe
Q 018109 187 YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRS 262 (360)
Q Consensus 187 ~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~ 262 (360)
.+.-+.+|...+.....++...+....+++++.+.+++.+++++.+ ..+.|. ++.||++|.|. ++.|. +++||++|
T Consensus 78 ~~i~~~~p~~~~~~~~~~~~~~~~~~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~ 157 (357)
T 4e79_A 78 NFIIVDNPYLAFAILTHVFDKKISSTGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDC 157 (357)
T ss_dssp EEEECSCHHHHHHHHHTTSSCCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSC
T ss_pred cEEEECCHHHHHHHHHHHhccccccCeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 3555666775554444444333222556666666666666555555 334443 56666666666 55664 66777777
Q ss_pred EECCCCEEeceEEECCcccchhHHHHhhhh---------CC-------CcceEECCCCeEe-eeEec----CCCEECCCc
Q 018109 263 RINANVHLKDTMMLGADFYETDAEVASLLA---------EG-------RVPVGIGENTKIK-ECIID----KNARIGKNV 321 (360)
Q Consensus 263 ~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~-------~~~~~ig~~~~i~-~~~i~----~~~~ig~~~ 321 (360)
.|++++.|...+.+|++......++ +. +| .+.+.||++|.|+ +|.|. +++.||+++
T Consensus 158 ~I~~~~~I~~~~~IG~~~~I~~g~~---Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~ 234 (357)
T 4e79_A 158 FIDSYVTITGSSKLRDRVRIHSSTV---IGGEGFGFAPYQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGALDNTILEDGV 234 (357)
T ss_dssp EECTTCEECTTCEECSSCEECTTCE---ESCCCCCEEEETTEEEECCCCCCEEECTTCEECTTCEECCCSSSCEEECTTC
T ss_pred EECCCcEEecccEEEeEeeccCCeE---ECcccCcccccCCceeeccccCcEEEcCCcEEccccEEeccccCCccccCCc
Confidence 7777776665555555421111000 00 00 0126666666664 55555 555666666
Q ss_pred EEecCCCcccccccCCceEEeCCe-----EEEcCCcEeCCCccC
Q 018109 322 IIANSEGIQEADRSAEGFYIRSGV-----TVILKNSVITDGFVI 360 (360)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~-----~~ig~~~~i~~g~~i 360 (360)
.+.+...+..+++|+++++|+.++ ++||++|.||++++|
T Consensus 235 ~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V 278 (357)
T 4e79_A 235 IIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGV 278 (357)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ccCCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEE
Confidence 666666666666777776666554 467888888888764
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.6e-14 Score=132.40 Aligned_cols=159 Identities=20% Similarity=0.290 Sum_probs=107.0
Q ss_pred ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeec--CHHHHH----HHHHHcCCcEEEEEeecCCCCCCcccEEE
Q 018109 23 RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--DYMDFV----QNHRQSGADITISCLPMDDSRASDFGLMK 96 (360)
Q Consensus 23 ~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~--dl~~ll----~~h~~~~a~~tll~~~~~~~~~~~~g~v~ 96 (360)
++.+||+++++.+.. +... ..++.|+|++||+++.. .|.+++ ++|++ ++.+|+.+.+... ...||++.
T Consensus 79 ~~~~gta~ai~~a~~-l~~~--~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt~~i~p~~~--~t~yG~I~ 152 (337)
T 2cu2_A 79 PLGRDTAGAVLLGVA-EALK--EGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVVALGLRPTRP--ETEYGYIR 152 (337)
T ss_dssp SSCCHHHHHHHHHHH-HHHH--HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEEEEEECCSSC--CSSSCEEE
T ss_pred CCCCCcHHHHHHHHH-Hhcc--CCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeEEEeeccCCC--CCCceEEE
Confidence 346799999999987 5310 01378999999998753 344444 44444 6778888877654 46899998
Q ss_pred ECCC----CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCc-chh-----
Q 018109 97 INNE----GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN-DFG----- 166 (360)
Q Consensus 97 ~d~~----g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~-~~~----- 166 (360)
.+++ ++|..|.|||+...++ +... ..+++++|+|+|++++|...++...+... .+.
T Consensus 153 ~~~~~~~~~~V~~f~EKp~~~~a~-------------~~~~-~g~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~~~~~~~ 218 (337)
T 2cu2_A 153 LGPREGAWYRGEGFVEKPSYAEAL-------------EYIR-KGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAG 218 (337)
T ss_dssp EEEEETTEEEEEEEECCCCHHHHH-------------HHHH-TTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTT
T ss_pred ECCcccccCeEEEEEeCCChHHHH-------------HHhh-cCCEEEEEEEEEeHHHHHHHHHHHCHHHHHHHHHHhcC
Confidence 8755 7999999999754311 0000 11689999999999988444554422210 010
Q ss_pred ---hccccc---------ccc-cCceEEEEeCCceeecCCHHHHHHHH
Q 018109 167 ---SEIIPA---------SAN-EQFLKAYLFNDYWEDIGTIRSFFEAN 201 (360)
Q Consensus 167 ---~~~l~~---------~i~-~~~I~~~~~~g~w~digtp~~~~~a~ 201 (360)
.+.++. +++ +.++++++.+++|.|+|||++|.++.
T Consensus 219 ~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~ 266 (337)
T 2cu2_A 219 ASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (337)
T ss_dssp CCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred CcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHh
Confidence 122322 344 46899999999999999999999884
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=124.57 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=21.1
Q ss_pred ccccCCceEEeCCeE-----EEcCCcEeCCCccC
Q 018109 332 ADRSAEGFYIRSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 332 ~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~i 360 (360)
.+.|+|+++|+.+++ +||+++.|++|++|
T Consensus 170 ~v~Ig~~~~IG~~~~I~~g~~IG~~~~IgagsvV 203 (273)
T 3fs8_A 170 GVTIELFAVIAARSVVLPGIHINEDALVGAGAVV 203 (273)
T ss_dssp CCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CcEECCCeEEcCCCEEcCCCEECCCCEECCCCEE
Confidence 357778888877764 56788888888764
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-14 Score=131.73 Aligned_cols=127 Identities=20% Similarity=0.233 Sum_probs=65.7
Q ss_pred ccCceEEEEeCCc----eeecCCHHHHHHHHHHhhcCCCC-----CCccCCCCceeccCCCCCCceecCceeeceEECCC
Q 018109 175 NEQFLKAYLFNDY----WEDIGTIRSFFEANLALTAHPPM-----FSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHG 245 (360)
Q Consensus 175 ~~~~I~~~~~~g~----w~digtp~~~~~a~~~~l~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~ 245 (360)
+..++++|...++ |.|+++ ++++++.++..... ...+.........+.+.+++.+.+ ++.||++
T Consensus 37 ~~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~~----~v~Ig~~ 109 (240)
T 3r8y_A 37 ETVQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRD----HVEIGDN 109 (240)
T ss_dssp TTSEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEBS----SCEECTT
T ss_pred CcceEEEcCCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEECC----CcEECCC
Confidence 3456666655555 999988 77788777633200 000000000111222333333322 4555555
Q ss_pred CEEc-ceEE-eeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEee---------eEecCC
Q 018109 246 SFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CIIDKN 314 (360)
Q Consensus 246 ~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~---------~~i~~~ 314 (360)
|.|+ ++.| .+++||++|.|++++.|++.+.+|++ |.|++++.+.+ ++||++
T Consensus 110 ~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~------------------~~I~~~~~i~~~~~~~~~~~~~Ig~~ 171 (240)
T 3r8y_A 110 AVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKN------------------CHVGAGAVLAGVIEPPSAKPVIVEDD 171 (240)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTT------------------CEECTTCEECCCCSCTTSCCCEECTT
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEECCC------------------cEECCCcEECCCccCCCCCCcEECCC
Confidence 5554 4444 25666666666666666555555554 66666666644 666666
Q ss_pred CEECCCcEEecC
Q 018109 315 ARIGKNVIIANS 326 (360)
Q Consensus 315 ~~ig~~~~~~~~ 326 (360)
|.||.++++...
T Consensus 172 ~~IG~~~~I~~~ 183 (240)
T 3r8y_A 172 VVIGANVVVLEG 183 (240)
T ss_dssp CEECTTCEECTT
T ss_pred CEECCCCEECCC
Confidence 666666666443
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.3e-13 Score=123.27 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=41.9
Q ss_pred CccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEee---------------eEEecCeEECCCCEEece
Q 018109 212 SFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEH---------------SVVGIRSRINANVHLKDT 273 (360)
Q Consensus 212 ~~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~---------------~~ig~~~~i~~~~~i~~~ 273 (360)
.++++.+.+.+++.|++++.| ..+.|. ++.||++|.|+ ++.|.. ++||++|.|++++.|...
T Consensus 9 ~~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~ 88 (273)
T 3fs8_A 9 AIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGD 88 (273)
T ss_dssp CEECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESS
T ss_pred eEECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCC
Confidence 344555555555555555555 344442 66777777777 566542 778888888877777665
Q ss_pred EEECCc
Q 018109 274 MMLGAD 279 (360)
Q Consensus 274 ~~~~~~ 279 (360)
+.+|++
T Consensus 89 ~~Ig~~ 94 (273)
T 3fs8_A 89 TIIGDN 94 (273)
T ss_dssp CEECTT
T ss_pred CEECCC
Confidence 666654
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-12 Score=115.13 Aligned_cols=119 Identities=18% Similarity=0.304 Sum_probs=87.4
Q ss_pred CccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEec-----eEEECCccc
Q 018109 212 SFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD-----TMMLGADFY 281 (360)
Q Consensus 212 ~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~-----~~~~~~~~~ 281 (360)
.++++...+++++.|.+++.+.+ ++.||++|.|+ ++.|. .++||++|.|++++.|.. .+++|++
T Consensus 28 ~~~~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~-- 101 (191)
T 3ixc_A 28 PYAGVSPSVDSTAFIAGNARIIG----DVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKF-- 101 (191)
T ss_dssp CBTTBCCEECTTSEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTT--
T ss_pred cccCCCCEECCCCEECCCCEEeC----CcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCC--
Confidence 45556667777777777776643 67788888888 67774 358999999999999974 5667775
Q ss_pred chhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCcc
Q 018109 282 ETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 359 (360)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~ 359 (360)
+.|++++.|.+++||++|.||+++.+.+. ++|+++++|++++++ .++..|+++++
T Consensus 102 ----------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~------~~Ig~~~~Ig~gsvV-~~~~~i~~~~~ 156 (191)
T 3ixc_A 102 ----------------VTIGHSCILHACTLGNNAFVGMGSIVMDR------AVMEEGSMLAAGSLL-TRGKIVKSGEL 156 (191)
T ss_dssp ----------------CEECTTCEECSCEECTTCEECTTCEECTT------CEECTTCEECTTCEE-CTTCEECTTEE
T ss_pred ----------------CEECCCCEEECCEECCCCEECCCCEEeCC------eEECCCCEECCCCEE-CCCcCcCCCeE
Confidence 89999999999999999999999998775 455555666666433 45555555544
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-13 Score=117.80 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=56.4
Q ss_pred eEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCE
Q 018109 240 SIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNAR 316 (360)
Q Consensus 240 ~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ 316 (360)
+.||++|.|. ++.|. ++.||++|.|++++.|++.+.+|++ +.|++++.|. +++|++++.
T Consensus 16 ~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~------------------~~I~~~~~I~~~~~Ig~~~~ 77 (192)
T 3mqg_A 16 ARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNR------------------VKIQNNVSVYDNVFLEDDVF 77 (192)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSS------------------CEECTTCEECTTEEECTTCE
T ss_pred CEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCC------------------cEEcCCcEEeCCCEECCCCE
Confidence 3444444444 33332 4666666666666666665666654 6666666664 566666666
Q ss_pred ECCCcEEecCCC---------cccccccCCceEEeCCeE-----EEcCCcEeCCCccC
Q 018109 317 IGKNVIIANSEG---------IQEADRSAEGFYIRSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 317 ig~~~~~~~~~~---------~~~~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~i 360 (360)
||+++.+.+... .....+|+++++|+.+++ +||+++.|++|++|
T Consensus 78 ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV 135 (192)
T 3mqg_A 78 CGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVV 135 (192)
T ss_dssp ECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEE
Confidence 666666654211 012234555555554443 45666666666653
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=113.82 Aligned_cols=118 Identities=18% Similarity=0.282 Sum_probs=89.0
Q ss_pred ccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe----eeEEecCeEECCCCEE-----------eceEEE
Q 018109 213 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHL-----------KDTMML 276 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i-----------~~~~~~ 276 (360)
+....+.+++++.|.+++.+.+ ++.||++|.|+ ++.|. .++||++|.|++++.| ...+++
T Consensus 11 ~~~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~I 86 (187)
T 3r3r_A 11 YKNLFPGIGQRVMIDTSSVVIG----DVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLII 86 (187)
T ss_dssp BTTBCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEE
T ss_pred hcccCcccCCCeEECCCCEEEC----ceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEE
Confidence 3345566777777777777743 67888888888 67775 3599999999999999 366788
Q ss_pred CCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCC
Q 018109 277 GADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITD 356 (360)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~ 356 (360)
|++ +.|+++|.|.+++||++|.||+++++... +.|+++++|+.++++ .++..|++
T Consensus 87 g~~------------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~------~~Ig~~~~Ig~~s~V-~~~~~i~~ 141 (187)
T 3r3r_A 87 GED------------------VTVGHKVMLHGCTIGNRVLVGMGSIVLDG------AIIEDDVMIGAGSLV-PQHKRLES 141 (187)
T ss_dssp CSS------------------CEECTTCEEESCEECSSEEECTTCEECTT------CEECSSEEECTTCEE-CTTCEECT
T ss_pred CCC------------------CEECCCCEEeCcEECCCCEECCCCEECCC------CEECCCCEECCCCEE-CCCcCcCC
Confidence 876 99999999999999999999999999764 456666666666543 45555665
Q ss_pred Ccc
Q 018109 357 GFV 359 (360)
Q Consensus 357 g~~ 359 (360)
+++
T Consensus 142 ~~v 144 (187)
T 3r3r_A 142 GYL 144 (187)
T ss_dssp TEE
T ss_pred CcE
Confidence 554
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=112.11 Aligned_cols=116 Identities=24% Similarity=0.347 Sum_probs=84.0
Q ss_pred cCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEee----eEEecCeEECCCCEEec----eEEECCcccchh
Q 018109 214 YDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLKD----TMMLGADFYETD 284 (360)
Q Consensus 214 ~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~----~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~ 284 (360)
+.+...+++++.+.+++.+.+ ++.||++|.|. ++.|.. ++||++|.|++++.|.. .+.+|++
T Consensus 9 ~~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~----- 79 (173)
T 1xhd_A 9 KEKKPKIASSAFIADYVTITG----DVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDD----- 79 (173)
T ss_dssp TTBCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTT-----
T ss_pred CCCCCEECCCcEECCCCEEEC----CEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCC-----
Confidence 344455666666666665532 77888888888 777753 79999999999999983 5677776
Q ss_pred HHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCc
Q 018109 285 AEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 358 (360)
Q Consensus 285 ~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 358 (360)
+.|++++.|.+++||++|.||+++.+.+.. .|+++++|+.++++ .++..|++++
T Consensus 80 -------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~~------~Ig~~~~Ig~~s~V-~~~~~i~~~~ 133 (173)
T 1xhd_A 80 -------------VTVGHQVILHSCHIKKDALIGMGSIILDGA------EIGEGAFIGAGSLV-SQGKKIPPNT 133 (173)
T ss_dssp -------------CEECTTCEEESCEECTTCEECTTCEECTTC------EECTTCEECTTCEE-CTTCEECTTE
T ss_pred -------------CEECCCCEEeCCEECCCCEEcCCCEEcCCC------EECCCCEECCCCEE-CCCcEeCCCC
Confidence 999999999999999999999999987654 45555555555433 3334444443
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=113.64 Aligned_cols=118 Identities=21% Similarity=0.329 Sum_probs=87.9
Q ss_pred ccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEec-----------eEEE
Q 018109 213 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD-----------TMML 276 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~-----------~~~~ 276 (360)
+....+.+++.+.+.+++.+.+ ++.||++|.|+ ++.|. .+.||++|.|++++.|.. .+.+
T Consensus 15 ~~~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~I 90 (189)
T 3r1w_A 15 YQGISPKLGERVFVDRSSVIIG----DVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLII 90 (189)
T ss_dssp BTTBCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEE
T ss_pred ccCcCCEECCCcEECCCCEEee----eeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEE
Confidence 3344566777777777777743 67888888888 67774 358999999999999987 5678
Q ss_pred CCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCC
Q 018109 277 GADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITD 356 (360)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~ 356 (360)
|++ +.|+++|.|.+++||++|.||+++++... ++|+++++|+.++++ .++..|++
T Consensus 91 g~~------------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~------v~Ig~~~~Ig~~s~V-~~g~~i~~ 145 (189)
T 3r1w_A 91 GDD------------------VTIGHQAMLHGCTIGNRVLIGMKSMIMDG------AIVEDEVIVAAGATV-SPGKVLES 145 (189)
T ss_dssp CSS------------------EEECTTCEEESCEECSSEEECTTCEECTT------CEECSSCEECTTCEE-CTTCEECT
T ss_pred CCC------------------CEECCCCEEeCcEECCCcEECCCCEEcCC------CEECCCCEEccCCEE-CCCCEeCC
Confidence 876 99999999999999999999999998764 455556666666533 45555555
Q ss_pred Ccc
Q 018109 357 GFV 359 (360)
Q Consensus 357 g~~ 359 (360)
+++
T Consensus 146 ~~v 148 (189)
T 3r1w_A 146 GFV 148 (189)
T ss_dssp TEE
T ss_pred CCE
Confidence 544
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=112.69 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=79.5
Q ss_pred CCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEee----eEEecCeEECCCCEEec----eEEECCcccchhH
Q 018109 215 DATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLKD----TMMLGADFYETDA 285 (360)
Q Consensus 215 ~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~----~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~ 285 (360)
+....+++++.+.+++.+.+ ++.||++|.|. ++.|.. ++||++|.|++++.|.. .+++|++
T Consensus 8 ~~~~~i~~~~~I~~~a~i~g----~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------ 77 (173)
T 1v3w_A 8 GKKPRIHPSAFVDENAVVIG----DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEY------ 77 (173)
T ss_dssp TBCCEECTTCEECTTSEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSS------
T ss_pred CCCCEECCCCEECCCCEEeC----CEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCC------
Confidence 34455666666777666633 67888888888 677753 89999999999999985 3788876
Q ss_pred HHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCe
Q 018109 286 EVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV 345 (360)
Q Consensus 286 ~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (360)
+.|++++.|.+++||++|.||+++.+.+.. .|+++++|+.++
T Consensus 78 ------------~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~------~Ig~~~~Ig~~s 119 (173)
T 1v3w_A 78 ------------VTIGHNAMVHGAKVGNYVIIGISSVILDGA------KIGDHVIIGAGA 119 (173)
T ss_dssp ------------CEECTTCEEESCEECSSEEECTTCEECTTC------EECSSEEECTTC
T ss_pred ------------CEECCCCEECCCEECCCCEECCCCEEeCCC------EECCCCEECCCC
Confidence 999999999999999999999999988754 445555555554
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=115.26 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=72.5
Q ss_pred CCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEece----------------E
Q 018109 216 ATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT----------------M 274 (360)
Q Consensus 216 ~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~~----------------~ 274 (360)
++.+|++++.|.+.+.+.+ ++.||++|.|+ ++.|. +++||++|.|++++.|... +
T Consensus 11 ~~v~I~~~a~I~~~a~I~g----~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~ 86 (194)
T 3tv0_A 11 KSVKIAPGAVVCVESEIRG----DVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPM 86 (194)
T ss_dssp -CEEECTTCEECTTSEEES----SEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCE
T ss_pred CCCEECCCCEEcCCCEEeC----CCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCce
Confidence 4455555555555555543 77888888888 77774 4789999999999999753 3
Q ss_pred EECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 275 MLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
++|++ +.|+.++.+.++.||++|.||+++.|... +.||+++.|++++++ .+++.|
T Consensus 87 ~Ig~~------------------~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~g------v~IG~~~~IgagsvV-~~~~~I 141 (194)
T 3tv0_A 87 IIGTN------------------NVFEVGCYSQAMKMGDNNVIESKAYVGRN------VILTSGCIIGACCNL-NTFEVI 141 (194)
T ss_dssp EECSS------------------CEECTTCEECCSEECSSCEECTTCEECTT------EEECSSCEECTTCEE-CCCEEE
T ss_pred EECCc------------------ceEecceeEeeeeecccceecceeeECCe------EEECCCCEECCCCEE-CCCcEE
Confidence 44443 56666666666777777777777777654 455555555555432 344444
Q ss_pred CCCc
Q 018109 355 TDGF 358 (360)
Q Consensus 355 ~~g~ 358 (360)
++++
T Consensus 142 p~~s 145 (194)
T 3tv0_A 142 PENT 145 (194)
T ss_dssp CTTE
T ss_pred CCCC
Confidence 4444
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-12 Score=112.50 Aligned_cols=113 Identities=22% Similarity=0.245 Sum_probs=79.4
Q ss_pred ceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-----eeEEecCeEECCCCEEec--------------eEEECC
Q 018109 219 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKD--------------TMMLGA 278 (360)
Q Consensus 219 ~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-----~~~ig~~~~i~~~~~i~~--------------~~~~~~ 278 (360)
.+++.+.+.+.+.+.+ ++.||++|.|+ ++.|. .++||++|.|++++.|.. .+.+|+
T Consensus 41 ~i~~~~~I~~~a~i~~----~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~ 116 (213)
T 3kwd_A 41 EIAPTAYVHSFSNLIG----DVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGD 116 (213)
T ss_dssp EECTTCEECTTSEEEE----SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECT
T ss_pred cCCCCCEECCCCEEeC----ceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECC
Confidence 3444455555544422 56778888887 66664 378999999999999975 366776
Q ss_pred cccchhHHHHhhhhCCCcceEECCCCeEee-eEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE----EEcCCcE
Q 018109 279 DFYETDAEVASLLAEGRVPVGIGENTKIKE-CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT----VILKNSV 353 (360)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~-~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~ig~~~~ 353 (360)
+ +.|++++.|.. ++||++|.||+++++.+ ++|+++++|+.+++ +|++++.
T Consensus 117 ~------------------v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~-------~~Ig~~~~Igags~V~~~~i~~~~~ 171 (213)
T 3kwd_A 117 N------------------VSITHMALIHGPAYIGDGCFIGFRSTVFN-------ARVGAGCVVMMHVLIQDVEIPPGKY 171 (213)
T ss_dssp T------------------CEECTTCEEEEEEEECTTCEECTTCEEEE-------EEECTTCEECSSCEEESCEECTTBE
T ss_pred C------------------cEECCCcEEcCCCEECCCCEECCCCEEeC-------cEECCCCEEcCCCEECCcEeCCCCE
Confidence 5 88888888875 99999999999998874 34555555555543 3678888
Q ss_pred eCCCccC
Q 018109 354 ITDGFVI 360 (360)
Q Consensus 354 i~~g~~i 360 (360)
|++++++
T Consensus 172 v~~~~vv 178 (213)
T 3kwd_A 172 VPSGMVI 178 (213)
T ss_dssp ECTTCEE
T ss_pred ECCCcEE
Confidence 8888764
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-12 Score=111.49 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=26.1
Q ss_pred eEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeE----eeeEecCCCEECCCcEE
Q 018109 256 SVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKI----KECIIDKNARIGKNVII 323 (360)
Q Consensus 256 ~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i----~~~~i~~~~~ig~~~~~ 323 (360)
..||++|.|++++.|...+.+|++ |.|+++|.| .+++||++|.|++++.|
T Consensus 53 v~IG~~~~I~~~~~I~~~v~IG~~------------------~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I 106 (205)
T 3vbi_A 53 ISIGNNVRIDDFCILSGKVTIGSY------------------SHIAAYTALYGGEVGIEMYDFANISSRTIV 106 (205)
T ss_dssp EEECSSEEECTTCEEEEEEEECSS------------------EEECTTCEEEEEEEEEEECTTCEECTTCEE
T ss_pred eEECCCCEECCCCEEccceEECCC------------------CEECCCeEEEcCCccEEECCCCEECCCcEE
Confidence 455555555555555555555544 555555555 12555555555555555
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-11 Score=113.23 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=79.9
Q ss_pred ceEECCCCEEc-ceEE-----eeeEEecCeEECCCCEEec--eEEECCcccchhHHHHhhhhCCCcceEECCCCeEe---
Q 018109 239 DSIISHGSFIT-SSFI-----EHSVVGIRSRINANVHLKD--TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK--- 307 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i-----~~~~ig~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~--- 307 (360)
++.|++++.|. .+.+ ....||+++.|++++.|.. .+.+|++ +.|+++|.|.
T Consensus 63 ~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG~~------------------~~Ig~~~~I~~~~ 124 (252)
T 3jqy_B 63 KLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIGRR------------------TTIGAGFEVVTDK 124 (252)
T ss_dssp EEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEECTT------------------CEECTTCEEECSS
T ss_pred EEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEECCC------------------CEECCCcEEEeCC
Confidence 67888888887 4555 3567888888888888853 6778876 9999999997
Q ss_pred -eeEecCCCEECCCcEEecCC-------------CcccccccCCceEEeCCeE-----EEcCCcEeCCCccC
Q 018109 308 -ECIIDKNARIGKNVIIANSE-------------GIQEADRSAEGFYIRSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 308 -~~~i~~~~~ig~~~~~~~~~-------------~~~~~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~i 360 (360)
++.||++|.||++|++.+++ ...++++|+|+++||++++ +||++|.||+|++|
T Consensus 125 ~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV 196 (252)
T 3jqy_B 125 CNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIV 196 (252)
T ss_dssp SEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEE
T ss_pred CCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEE
Confidence 89999999999999999873 2334456777777777763 66788888888764
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.2e-12 Score=116.10 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=29.3
Q ss_pred CceeccCCCCCCceecCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCc
Q 018109 218 KPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 279 (360)
Q Consensus 218 ~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~ 279 (360)
..|++++.+.+++.+.. ++.|+++|.|.+ ++.||++|.|++++.|...+.+|++
T Consensus 23 ~~I~p~a~I~~~a~ig~----~v~Ig~~~~I~~----~v~IG~~~~I~~~~~I~~~~~IG~~ 76 (283)
T 4eqy_A 23 SRIHPTAIIEPGAQLHE----TVEVGPYAIVGS----NVTIGARTTIGSHSVIEGHTTIGED 76 (283)
T ss_dssp CCBCTTCEECTTCEECT----TCEECTTCEECT----TEEECTTCEECTTCEECSEEEECSS
T ss_pred cccCCCCEECCCCEECC----CCEECCCCEECC----CCEECCCCEECCCCEECCCcEECCC
Confidence 34444444444444422 444444444442 5666777777777666666666665
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-11 Score=118.34 Aligned_cols=95 Identities=23% Similarity=0.242 Sum_probs=72.4
Q ss_pred CccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEE-eeeEEecCeEECCCCEEeceEEECCcccchhHHH
Q 018109 212 SFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEV 287 (360)
Q Consensus 212 ~~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~ 287 (360)
..+++.+.+.+++.+++++.+ ..+.|. ++.||++|.|. ++.| .+++||++|.|++++.|...+.+|++
T Consensus 125 ~~i~~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~-------- 196 (374)
T 2iu8_A 125 PGIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKR-------- 196 (374)
T ss_dssp CSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTT--------
T ss_pred CccCCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCC--------
Confidence 456777778888888888888 567775 88888888888 6777 47888888888888888877788876
Q ss_pred HhhhhCCCcceEECCCCeEe---------------------eeEecCCCEECCCcEEe
Q 018109 288 ASLLAEGRVPVGIGENTKIK---------------------ECIIDKNARIGKNVIIA 324 (360)
Q Consensus 288 ~~~~~~~~~~~~ig~~~~i~---------------------~~~i~~~~~ig~~~~~~ 324 (360)
+.|++++.|. .++||++|.||++++|.
T Consensus 197 ----------~~I~~~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~ 244 (374)
T 2iu8_A 197 ----------VIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTID 244 (374)
T ss_dssp ----------CEECTTCEEEEECSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEE
T ss_pred ----------CEECCCCEECcCCcccccccCCceeEeeeeccEEECCCCEECCCcEEc
Confidence 6677666663 26677777777777664
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=107.79 Aligned_cols=102 Identities=19% Similarity=0.305 Sum_probs=78.2
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec---eEEECCcccchhHHHHhhhhCCCcceEECCCCeEe------
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK------ 307 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~------ 307 (360)
...|+++|.|. ++.|. ++.||++|.|++++.|.. .+.+|++ +.|+++|.|.
T Consensus 33 ~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~g 94 (191)
T 3ixc_A 33 SPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEG------------------TNIQDNTVVHTDSMHG 94 (191)
T ss_dssp CCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEECC----C
T ss_pred CCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCC------------------CEECCCCEEeecCCcC
Confidence 34556666666 45553 788999999999999984 4588886 9999999997
Q ss_pred eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 308 ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 308 ~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
+++||++|.||+++.+.+ ..++++++|+.++.|..++ +||+++.|++|++|
T Consensus 95 ~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~~-~Ig~~~~Ig~gsvV 145 (191)
T 3ixc_A 95 DTVIGKFVTIGHSCILHA-CTLGNNAFVGMGSIVMDRA-VMEEGSMLAAGSLL 145 (191)
T ss_dssp CEEECTTCEECTTCEECS-CEECTTCEECTTCEECTTC-EECTTCEECTTCEE
T ss_pred CeEECCCCEECCCCEEEC-CEECCCCEECCCCEEeCCe-EECCCCEECCCCEE
Confidence 899999999999998875 4555566666666666664 55888888888764
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-11 Score=111.72 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=32.7
Q ss_pred CCCCceeccCCCCCCceecCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCc
Q 018109 215 DATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 279 (360)
Q Consensus 215 ~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~ 279 (360)
++++.+++.+.+.+++.+.. ++.|+++|.|.+ ++.||++|.|++++.|...+.+|++
T Consensus 3 ~~~~~I~p~a~I~~~a~Ig~----~v~I~~~~~I~~----~v~IG~~~~I~~~~~I~~~~~IG~~ 59 (262)
T 2qia_A 3 DKSAFVHPTAIVEEGASIGA----NAHIGPFCIVGP----HVEIGEGTVLKSHVVVNGHTKIGRD 59 (262)
T ss_dssp CTTCEECTTCEECTTCEECT----TCEECTTCEECT----TEEECTTCEECSSCEECSEEEECSS
T ss_pred CCCCeECCCCEECCCCEECC----CCEECCCCEECC----CCEECCCcEECCCCEECCCcEECCC
Confidence 44455555555544444422 445555555542 5677777777777777766677765
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-12 Score=119.42 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=16.8
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccC
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSA 336 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~ 336 (360)
+.||++|.|+ +|+|.+++.||++|+|+..+.+....+|+
T Consensus 203 v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Ig 242 (304)
T 3eg4_A 203 TIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIV 242 (304)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEE
T ss_pred eEEcCCCEECCCCEEcCCcEECCCcEECCCCEEcCCeEEC
Confidence 4444444443 34444444444444444443333333333
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.2e-12 Score=125.35 Aligned_cols=70 Identities=23% Similarity=0.314 Sum_probs=53.6
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCE
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 316 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ 316 (360)
++.||++|.|+ ++.|. +++||++|.|++++.|+ .+.+|++ +.|+++|.|.+++||++|.
T Consensus 265 ~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~------------------~~I~~~~~i~~~~ig~~~~ 325 (456)
T 2v0h_A 265 TLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLK-NVVIGND------------------VEIKPYSVLEDSIVGEKAA 325 (456)
T ss_dssp EEEECSSCEECSSEEEEEEEEECTTCEECTTCEEE-EEEECTT------------------CEECSSCEEEEEEECTTCE
T ss_pred ceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEE-eEEEeCC------------------CEEcCCeEEccCcCCCCcE
Confidence 67888888888 67774 78999999999999998 4566665 7777777777777777777
Q ss_pred ECCCcEEecCC
Q 018109 317 IGKNVIIANSE 327 (360)
Q Consensus 317 ig~~~~~~~~~ 327 (360)
|++++.+....
T Consensus 326 I~~~~~i~~~~ 336 (456)
T 2v0h_A 326 IGPFSRLRPGA 336 (456)
T ss_dssp ECSSEEECTTC
T ss_pred ECCccEECCCC
Confidence 77666665443
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-11 Score=105.96 Aligned_cols=110 Identities=22% Similarity=0.273 Sum_probs=74.6
Q ss_pred ccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHH
Q 018109 213 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVA 288 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 288 (360)
++++++.+.+.+.|++++.+ ..+.|. ++.||++|.|+ ++.|. +++||++|.|++++.|...+.++++
T Consensus 5 ~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~--------- 75 (192)
T 3mqg_A 5 TIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDD--------- 75 (192)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTT---------
T ss_pred EECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCC---------
Confidence 44555556556666666655 344443 68888888887 77775 5888899999888888888888876
Q ss_pred hhhhCCCcceEECCCCeE----------------eeeEecCCCEECCCcEEecCCCcccccccCCceE
Q 018109 289 SLLAEGRVPVGIGENTKI----------------KECIIDKNARIGKNVIIANSEGIQEADRSAEGFY 340 (360)
Q Consensus 289 ~~~~~~~~~~~ig~~~~i----------------~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 340 (360)
+.||+++.+ ..++||++|.||++++|.....++++++|+.++.
T Consensus 76 ---------~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~Igagsv 134 (192)
T 3mqg_A 76 ---------VFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAV 134 (192)
T ss_dssp ---------CEECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred ---------CEECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCE
Confidence 777776666 3477888888888888776544444444443333
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.1e-13 Score=124.78 Aligned_cols=100 Identities=18% Similarity=0.293 Sum_probs=45.8
Q ss_pred cCCCCCCceecCceeeceEECCCCEEcceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEEC
Q 018109 223 SRRNLPPSKIDDSKIVDSIISHGSFITSSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 301 (360)
Q Consensus 223 ~~~~~~~~~~~~~~i~~~~i~~~~~i~~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 301 (360)
++++.|++.+.. ++.||++|.|.+..+. ++.||++|.|++++.|++.+.+|++ |.|+
T Consensus 145 ~~~I~p~a~I~~----~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~------------------v~I~ 202 (316)
T 3tk8_A 145 GFRVVPPAIARR----GSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLS 202 (316)
T ss_dssp CCEECTTCEEBT----TCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTT------------------CEEC
T ss_pred CcEEeCCeEEeC----CcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCC------------------CEEc
Confidence 344445444432 4455555555532222 3444444444444444444444443 4444
Q ss_pred CCCeEee---------eEecCCCEECCCcEEecCCCcccccccCCceEEeCC
Q 018109 302 ENTKIKE---------CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 344 (360)
Q Consensus 302 ~~~~i~~---------~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (360)
.++.|.. ++||++|.||++++|.....++.+++|+++++|+.+
T Consensus 203 ~~~~I~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~ 254 (316)
T 3tk8_A 203 GGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQS 254 (316)
T ss_dssp TTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred CCCEECCCcccccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence 4444432 455555555555555544444444444444444443
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-11 Score=103.73 Aligned_cols=101 Identities=22% Similarity=0.339 Sum_probs=77.6
Q ss_pred eEECCCCEEc-ceEE-eeeEEecCeEECCCCEEece---EEECCcccchhHHHHhhhhCCCcceEECCCCeEe-----ee
Q 018109 240 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----EC 309 (360)
Q Consensus 240 ~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-----~~ 309 (360)
..|++++.|. ++.+ .++.||+++.|++++.|... +.+|++ +.|+++|.|. ++
T Consensus 13 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~------------------~~I~~~~~I~~~~~~~~ 74 (173)
T 1xhd_A 13 PKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDR------------------VNVQDQCTLHQSPQYPL 74 (173)
T ss_dssp CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECCTTCCE
T ss_pred CEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCC------------------CEECCCCEEEeCCCCCe
Confidence 3456666666 4555 37899999999999999875 888886 9999999997 79
Q ss_pred EecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 310 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 310 ~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
+||++|.|+.++.+.+ ..++++++|+.++.|..++ +||+++.|+++++|
T Consensus 75 ~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~~-~Ig~~~~Ig~~s~V 123 (173)
T 1xhd_A 75 ILEDDVTVGHQVILHS-CHIKKDALIGMGSIILDGA-EIGEGAFIGAGSLV 123 (173)
T ss_dssp EECTTCEECTTCEEES-CEECTTCEECTTCEECTTC-EECTTCEECTTCEE
T ss_pred EECCCCEECCCCEEeC-CEECCCCEEcCCCEEcCCC-EECCCCEECCCCEE
Confidence 9999999999999865 3445555666666665554 56888888888864
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-11 Score=111.34 Aligned_cols=51 Identities=14% Similarity=0.030 Sum_probs=23.8
Q ss_pred eEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 309 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
+.||++|.|++++.+.....++.++.++.++.+..+ ++||+++.||++++|
T Consensus 111 ~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~-v~Igd~~~Ig~~a~V 161 (265)
T 4e6u_A 111 TKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGH-VHIGDHVIVGGNSGI 161 (265)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECSSCEECTTCEE
T ss_pred eEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCC-cEECCCeEEcCCCEE
Confidence 334444444444444333333333333333333333 356777777777754
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-11 Score=104.87 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=78.8
Q ss_pred eEECCCCEEc-ceEEe-eeEEecCeEECCCCEEece---EEECCcccchhHHHHhhhhCCCcceEECCCCeE--------
Q 018109 240 SIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKI-------- 306 (360)
Q Consensus 240 ~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-------- 306 (360)
..|++++.|. ++.+. ++.||+++.|++++.|... +.+|++ +.|+++|.|
T Consensus 16 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~ 77 (187)
T 3r3r_A 16 PGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGAR------------------TNIQDGSVLHVTHKSSS 77 (187)
T ss_dssp CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBCCBTT
T ss_pred cccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCC------------------CEECCCCEEecCCcccc
Confidence 4556666666 45553 7899999999999999875 489987 999999999
Q ss_pred ----eeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 307 ----KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 307 ----~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
.+++||++|.|++++.+.+ ..++++++|+.++.|..++ +||+++.|+++++|
T Consensus 78 ~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~~-~Ig~~~~Ig~~s~V 133 (187)
T 3r3r_A 78 NPHGNPLIIGEDVTVGHKVMLHG-CTIGNRVLVGMGSIVLDGA-IIEDDVMIGAGSLV 133 (187)
T ss_dssp BC-CBCEEECSSCEECTTCEEES-CEECSSEEECTTCEECTTC-EECSSEEECTTCEE
T ss_pred CCCCCCeEECCCCEECCCCEEeC-cEECCCCEECCCCEECCCC-EECCCCEECCCCEE
Confidence 6799999999999999965 4555566666666665554 56888888888864
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-11 Score=110.85 Aligned_cols=167 Identities=11% Similarity=0.093 Sum_probs=109.8
Q ss_pred ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-ee-ecCHHHHHHHHHHc-CCcEEEEEeecCCC----CCCcccEE
Q 018109 23 RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQS-GADITISCLPMDDS----RASDFGLM 95 (360)
Q Consensus 23 ~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~-~~dl~~ll~~h~~~-~a~~tll~~~~~~~----~~~~~g~v 95 (360)
+++.||++ ++.+..++.. ...+.|+++.||. +. ...+.++++.|++. +++++.++.++.++ .+..++ |
T Consensus 78 ~~~~Gt~~-i~~a~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vk-v 152 (256)
T 3tqd_A 78 DHQSGTER-IAEAAVALGF---EDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTK-V 152 (256)
T ss_dssp TCCSHHHH-HHHHHHHTTC---CTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCE-E
T ss_pred CCCCcHHH-HHHHHHHhCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccE-E
Confidence 45679987 7788877731 0147999999999 44 45689999999875 55777777777542 133344 4
Q ss_pred EECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhh--cccccc
Q 018109 96 KINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS--EIIPAS 173 (360)
Q Consensus 96 ~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~--~~l~~~ 173 (360)
..|++|+++.|.++|.......... .++.....+++...|+|+|++++|..+ .+..+...+..+ +.|+.+
T Consensus 153 v~d~~g~~l~fsr~pip~~r~~~~~-------~~~~~~~~~~~~~~GiY~y~~~~l~~~-~~l~~s~lE~~e~leqlr~l 224 (256)
T 3tqd_A 153 VLNRRNYALYFSHAPIPWGRDTFSD-------KENLQLNGSHYRHVGIYAYRVGFLEEY-LSWDACPAEKMEALEQLRIL 224 (256)
T ss_dssp EECTTSBEEEEESSCSSCCTTTTTC-------GGGCCCSSCCEEEEEEEEEEHHHHHHH-HHSCCCHHHHHHTCTTHHHH
T ss_pred EECCCCEEeEEecCCCCCCCccccc-------ccccccCCcceEEEEEEEcCHHHHHHH-HhCCCCcccchhhhHHHHHH
Confidence 5788999999999986432100000 000000125689999999999999876 343332111111 234433
Q ss_pred cccCceEEEEeCCc-eeecCCHHHHHHHHH
Q 018109 174 ANEQFLKAYLFNDY-WEDIGTIRSFFEANL 202 (360)
Q Consensus 174 i~~~~I~~~~~~g~-w~digtp~~~~~a~~ 202 (360)
-.+.+|.++..+++ |.+|+||++|.++++
T Consensus 225 e~G~~i~~~~~~~~~~~~idtpeDl~~a~~ 254 (256)
T 3tqd_A 225 WHGGRIHMVVAKSKCPPGVDTEEDLERVRA 254 (256)
T ss_dssp HTTCCCEEEECSSCCCCCCSSHHHHHHHHT
T ss_pred HCCCeEEEEEeCCCCCCCcCCHHHHHHHHH
Confidence 45789999999875 899999999999874
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=112.51 Aligned_cols=14 Identities=14% Similarity=-0.081 Sum_probs=9.0
Q ss_pred EEcCCcEeCCCccC
Q 018109 347 VILKNSVITDGFVI 360 (360)
Q Consensus 347 ~ig~~~~i~~g~~i 360 (360)
+||+++.||++++|
T Consensus 146 ~Igd~~~Ig~~a~V 159 (266)
T 3r0s_A 146 ELGDFTVVGGLTPI 159 (266)
T ss_dssp EECTTCEECTTCEE
T ss_pred EECCCcEEccCCEE
Confidence 55677777776653
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-11 Score=111.43 Aligned_cols=169 Identities=11% Similarity=0.119 Sum_probs=112.9
Q ss_pred CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCcEEEEEeecCCCC----CCcccEE
Q 018109 22 KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPMDDSR----ASDFGLM 95 (360)
Q Consensus 22 ~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~----~~~~g~v 95 (360)
++++.||++ ++.+...++. ...+.|+++.||. +....++++++.|++.++++++++.++++++ +..+. +
T Consensus 86 ~~~~~Gt~~-i~~~~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vk-V 160 (264)
T 3k8d_A 86 ADHQSGTER-LAEVVEKCAF---SDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVK-V 160 (264)
T ss_dssp TTCCSHHHH-HHHHHHHHTC---CTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCE-E
T ss_pred CCCCCCHHH-HHHHHHHhcc---CCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceE-E
Confidence 345679987 8888877741 1247999999998 4456689999999988889999999887621 22223 4
Q ss_pred EECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhh--cccccc
Q 018109 96 KINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS--EIIPAS 173 (360)
Q Consensus 96 ~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~--~~l~~~ 173 (360)
..|++|+++.|.+||..........+ .++. ..+++.+.|+|+|++++|..+.. ..+......+ +.|+.+
T Consensus 161 v~d~~g~~l~fsr~~ip~~r~~~~~~-------~~~~-~~~~~~~~GiY~y~~~~l~~~~~-~~~~~lE~~e~leqlr~l 231 (264)
T 3k8d_A 161 VLDAEGYALYFSRATIPWDRDRFAEG-------LETV-GDNFLRHLGIYGYRAGFIRRYVN-WQPSPLEHIEMLEQLRVL 231 (264)
T ss_dssp EECTTSBEEEEESSCCSCCHHHHHHC-------SSCC-CSCCEEECSEEEEEHHHHHHHHH-SCCCHHHHHHTCTTHHHH
T ss_pred EECCCCeEEEEecCCCCCCCcccccc-------cccc-CCcceEEEEEEEECHHHHHHHHh-CCCChhhhHHHHHHHHHH
Confidence 57889999999999853211000000 0000 02468999999999999987643 3222111111 233333
Q ss_pred cccCceEEEEe-CCceeecCCHHHHHHHHHHh
Q 018109 174 ANEQFLKAYLF-NDYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 174 i~~~~I~~~~~-~g~w~digtp~~~~~a~~~~ 204 (360)
-.+.+|.++.. ..+|.+|+||++|.++++.+
T Consensus 232 e~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l 263 (264)
T 3k8d_A 232 WYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 263 (264)
T ss_dssp HTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC
T ss_pred HCCCceEEEEeCCCCCCCCCCHHHHHHHHHHh
Confidence 34779999866 45689999999999997643
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-11 Score=114.36 Aligned_cols=116 Identities=18% Similarity=0.101 Sum_probs=57.9
Q ss_pred CceeccCCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCC
Q 018109 218 KPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGR 295 (360)
Q Consensus 218 ~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (360)
+.+...+.|+++|.| +++.|.++.|++++.|. ++.|.+++|+++|.|+.++.+.+.+.+.++ . ..+.+-.
T Consensus 78 ~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~-----~---~~~~~~~ 149 (334)
T 2pig_A 78 ARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAI-----Q---GLTHEHA 149 (334)
T ss_dssp CEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC----------------C
T ss_pred cEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeec-----c---eeecccC
Confidence 333333444444444 33444455555555555 555555555555555555555443333221 0 0011112
Q ss_pred cceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEe
Q 018109 296 VPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIR 342 (360)
Q Consensus 296 ~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~ 342 (360)
+++.|++++.|.+++|+++|.|+.++.+. .+.+.....|++++.+.
T Consensus 150 ~g~~I~~~a~I~~s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~ 195 (334)
T 2pig_A 150 QILQIYDRATVNHSRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIE 195 (334)
T ss_dssp CCEEECTTCEEESCEEETTCEECTTCEEE-SEEECTTCEECTTCEEE
T ss_pred CCeEECCCCEEeccEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEEC
Confidence 23677777777777777777777777775 34444444444444443
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=121.87 Aligned_cols=121 Identities=18% Similarity=0.271 Sum_probs=85.8
Q ss_pred eeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCc
Q 018109 220 IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRV 296 (360)
Q Consensus 220 v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (360)
+.+++.+++.+.+ ..+.|. ++.||++|.|+ ++.|.++.||++|.|+ ++.|.++ .+|++
T Consensus 271 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~-~Ig~~----------------- 331 (468)
T 1hm9_A 271 IDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEES-SVADG----------------- 331 (468)
T ss_dssp ECTTCEECTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESC-EECTT-----------------
T ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEecc-ccCCC-----------------
Confidence 4555666667767 455554 78999999998 8888899999999999 9988875 44554
Q ss_pred ceEECCCCeEe-eeEecCCCEECCCcEEecC-----CCcc-----cccccCCceEEeCCe------------EEEcCCcE
Q 018109 297 PVGIGENTKIK-ECIIDKNARIGKNVIIANS-----EGIQ-----EADRSAEGFYIRSGV------------TVILKNSV 353 (360)
Q Consensus 297 ~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~-----~~~~-----~~~~~~~~~~i~~~~------------~~ig~~~~ 353 (360)
+.|+++|.|. +++||.++.||+++.+.+. ..+. +.+.|++++.|+.++ ++||+++.
T Consensus 332 -~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~ 410 (468)
T 1hm9_A 332 -VTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVF 410 (468)
T ss_dssp -CEECSSCEECSSCEECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCE
T ss_pred -cEECCceEEecCcEECCccEECCCcEEeeeEEcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeE
Confidence 8888888887 7888888887776665431 1111 123566666666543 56788888
Q ss_pred eCCCccC
Q 018109 354 ITDGFVI 360 (360)
Q Consensus 354 i~~g~~i 360 (360)
||++++|
T Consensus 411 Ig~~~~i 417 (468)
T 1hm9_A 411 VGSNSTI 417 (468)
T ss_dssp ECTTCEE
T ss_pred ECCCCEE
Confidence 8888764
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.4e-11 Score=104.12 Aligned_cols=101 Identities=15% Similarity=0.254 Sum_probs=77.6
Q ss_pred eEECCCCEEc-ceEEe-eeEEecCeEECCCCEEe---ceEEECCcccchhHHHHhhhhCCCcceEECCCCeEee------
Q 018109 240 SIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK---DTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE------ 308 (360)
Q Consensus 240 ~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~------ 308 (360)
..|++++.|. ++.+. ++.||++|.|++++.|. ..+.+|++ |.|++++.|..
T Consensus 20 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~ 81 (189)
T 3r1w_A 20 PKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGAR------------------TSVQDGSVLHITHASDY 81 (189)
T ss_dssp CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBCCSSS
T ss_pred CEECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCC------------------CEECCCCEEecCCcccC
Confidence 3456666666 45553 78999999999999998 44689987 99999999965
Q ss_pred ------eEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 309 ------CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 309 ------~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
++||++|.|++++.+.+ ..++++++|+.++.|..++ +||+++.|++|++|
T Consensus 82 ~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~v-~Ig~~~~Ig~~s~V 137 (189)
T 3r1w_A 82 NPGGYPLIIGDDVTIGHQAMLHG-CTIGNRVLIGMKSMIMDGA-IVEDEVIVAAGATV 137 (189)
T ss_dssp STTCBCEEECSSEEECTTCEEES-CEECSSEEECTTCEECTTC-EECSSCEECTTCEE
T ss_pred CCCCCCeEECCCCEECCCCEEeC-cEECCCcEECCCCEEcCCC-EECCCCEEccCCEE
Confidence 49999999999999976 5555566666666665554 56888999888874
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.2e-12 Score=124.18 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=72.7
Q ss_pred ccCCCCCCcee-cCcee-eceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcce
Q 018109 222 TSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 298 (360)
Q Consensus 222 ~~~~~~~~~~~-~~~~i-~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (360)
+.+.+++.+.+ .++.| .++.||++|.|+ ++.|.+++||++|.|++++.|++ +.+|++ +
T Consensus 267 ~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~-~~Ig~~------------------~ 327 (459)
T 4fce_A 267 GELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLED-ARLDAN------------------C 327 (459)
T ss_dssp EEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEES-CEECTT------------------C
T ss_pred CcEEECCCcEECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeC-CEECCC------------------C
Confidence 34556666666 44555 367777777777 66677777777777777777754 344543 6
Q ss_pred EECCCCeEe-eeEecCCCEECCCcEEecC-----CCcc-----cccccCCceEEeCCe------------EEEcCCcEeC
Q 018109 299 GIGENTKIK-ECIIDKNARIGKNVIIANS-----EGIQ-----EADRSAEGFYIRSGV------------TVILKNSVIT 355 (360)
Q Consensus 299 ~ig~~~~i~-~~~i~~~~~ig~~~~~~~~-----~~~~-----~~~~~~~~~~i~~~~------------~~ig~~~~i~ 355 (360)
.||++|.|. +++||+++.||+++.+.+. ..+. +++.|++++.|+.++ ++||+++.||
T Consensus 328 ~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG 407 (459)
T 4fce_A 328 TVGPFARLRPGAELAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVG 407 (459)
T ss_dssp EECSSEEECTTCEECTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEEC
T ss_pred EECCccEECCCcEECCCcEECCCeEEeeeEEcCCCEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEc
Confidence 666666665 5666666666665544321 1111 123566666666554 5778888888
Q ss_pred CCccC
Q 018109 356 DGFVI 360 (360)
Q Consensus 356 ~g~~i 360 (360)
++++|
T Consensus 408 ~~~~I 412 (459)
T 4fce_A 408 SDTQL 412 (459)
T ss_dssp TTCEE
T ss_pred CCCEE
Confidence 87764
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-11 Score=110.02 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=21.0
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCc
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 279 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~ 279 (360)
++.|+++|.|.+ +++||++|.|++++.|...+.+|++
T Consensus 19 ~~~Ig~~~~I~~----~v~IG~~~~I~~~~~I~g~~~IG~~ 55 (270)
T 1j2z_A 19 GVEIGEFCVIGD----GVKLDEGVKLHNNVTLQGHTFVGKN 55 (270)
T ss_dssp TCEECTTCEECT----TCEECTTCEECTTCEECSEEEECTT
T ss_pred CCEECCCCEECC----CCEECCCCEEcCCcEEeCCeEEcCC
Confidence 344444444442 5666666666666666655666654
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=113.56 Aligned_cols=10 Identities=10% Similarity=0.630 Sum_probs=3.8
Q ss_pred eEECCCCEEc
Q 018109 240 SIISHGSFIT 249 (360)
Q Consensus 240 ~~i~~~~~i~ 249 (360)
+.||++|.|.
T Consensus 134 ~~IG~~~~I~ 143 (276)
T 3gos_A 134 AFVDEGTMVD 143 (276)
T ss_dssp CEECTTCEEC
T ss_pred eEECCCCEEC
Confidence 3333333333
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-11 Score=109.54 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=18.7
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCc
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 279 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~ 279 (360)
++.|+++|.|++ ++.||++|.|++++.|...+.+|++
T Consensus 18 ~v~I~~~~~I~~----~v~IG~~~~I~~~~~I~~~~~IG~~ 54 (259)
T 3hsq_A 18 SVEVGPYSIIEG----NVSIQEGTIIEGHVKICAGSEIGKF 54 (259)
T ss_dssp TCEECTTCEECS----SCEECTTCEECTTCEECTTEEECSS
T ss_pred CCEECCCCEECC----CCEECCCCEEcCCcEEcCCcEECCC
Confidence 334444444432 4555555555555555555555554
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.24 E-value=5e-11 Score=112.99 Aligned_cols=123 Identities=11% Similarity=0.087 Sum_probs=87.1
Q ss_pred CCccCC-CCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHH
Q 018109 211 FSFYDA-TKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA 288 (360)
Q Consensus 211 ~~~~~~-~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 288 (360)
..|+++ ++.+.+++.|.+++.+.+ ++.|+++|.|+ ++.|.+++||+++.|+++++|.++++.++
T Consensus 58 ~~~I~~~~a~I~~~a~I~~~~~I~g----~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~---------- 123 (334)
T 2pig_A 58 DCWIYDENAMAFAGTEITGNARITQ----PCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREE---------- 123 (334)
T ss_dssp SCEECCTTCEEETTCEECTTCEEES----SCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESS----------
T ss_pred ceEEcCCCeEEcCCcEECCCcEEee----eeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCC----------
Confidence 356677 777888888888877755 67788888888 77888999999999999999999987665
Q ss_pred hhhhCCCcceEECCCCeEe-eeEecCC----------CEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCC
Q 018109 289 SLLAEGRVPVGIGENTKIK-ECIIDKN----------ARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDG 357 (360)
Q Consensus 289 ~~~~~~~~~~~ig~~~~i~-~~~i~~~----------~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g 357 (360)
+.|+.++.+. ++.|+.+ +.|++++.+.. ..+...+.|++++.|+ ++ +|++++.|+++
T Consensus 124 ---------~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I~~~a~I~~-s~I~~g~~I~~~a~I~-~s-vI~~~a~I~~~ 191 (334)
T 2pig_A 124 ---------CAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNH-SRIVHQVQLYGNATIT-HA-FIEHRAEVFDF 191 (334)
T ss_dssp ---------EEECTTCEEESSCEEEC--------CCCEEECTTCEEES-CEEETTCEECTTCEEE-SE-EECTTCEECTT
T ss_pred ---------eEEecCCEEeCCEEEeecceeecccCCCeEECCCCEEec-cEEcCCCEEcCCeEEe-Cc-EEcCCCEECCC
Confidence 7888777765 5666444 66777766664 3444455556655555 42 34556666555
Q ss_pred cc
Q 018109 358 FV 359 (360)
Q Consensus 358 ~~ 359 (360)
++
T Consensus 192 a~ 193 (334)
T 2pig_A 192 AL 193 (334)
T ss_dssp CE
T ss_pred cE
Confidence 54
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.8e-11 Score=115.80 Aligned_cols=170 Identities=18% Similarity=0.186 Sum_probs=91.8
Q ss_pred eeecCCHHHHHHHHHHhhcCC-CCCCccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecCe
Q 018109 188 WEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRS 262 (360)
Q Consensus 188 w~digtp~~~~~a~~~~l~~~-~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~ 262 (360)
++-+.+|+..+.....++... ...+.+++++.+.+++.+++++.+ ..+.|. ++.||++|.|. ++.|. ++.||++|
T Consensus 95 ~l~~~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~ 174 (372)
T 3pmo_A 95 ALVVANPYLAYASLSHLFDRKPKAAAGIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGG 174 (372)
T ss_dssp EEECSCHHHHHHHHHGGGCCCCCCCSEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred EEEECCHHHHHHHHHHHhccccccccccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCc
Confidence 455556765554444444433 234566777777777777777766 445554 67777777776 66664 67777777
Q ss_pred EECCCCEEeceEEECCcccchhHHHHhhhh---------CC-------CcceEECCCCeEe-eeEec----CCCEECCCc
Q 018109 263 RINANVHLKDTMMLGADFYETDAEVASLLA---------EG-------RVPVGIGENTKIK-ECIID----KNARIGKNV 321 (360)
Q Consensus 263 ~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~-------~~~~~ig~~~~i~-~~~i~----~~~~ig~~~ 321 (360)
.|++++.|...+.+|++-.....++ +. +| .+++.||++|.|. +|.|. +++.||+++
T Consensus 175 ~I~~~~~I~~~~~IG~~v~I~~g~~---Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~ 251 (372)
T 3pmo_A 175 WLAPRVTLYHDVTIGARVSIQSGAV---IGGEGFGFANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGV 251 (372)
T ss_dssp EECTTCEECTTEEECTTCEECTTCE---EEECCCCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTC
T ss_pred ccCCCcEEEeeeEECceeeccCCcE---EecCcccccccCCcceeccccCCeEECCCCEECCCcEEccCcccceEECCCC
Confidence 7777777777776766511110000 00 00 0014444444443 33333 333344444
Q ss_pred EEecCCCcccccccCCceEEeCCe-----EEEcCCcEeCCCccC
Q 018109 322 IIANSEGIQEADRSAEGFYIRSGV-----TVILKNSVITDGFVI 360 (360)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~-----~~ig~~~~i~~g~~i 360 (360)
.+.+...+..+++|+++++|..++ ++||++|.||++++|
T Consensus 252 ~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V 295 (372)
T 3pmo_A 252 KLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGL 295 (372)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEE
Confidence 444444444444555555554433 366888888877764
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.24 E-value=7.8e-11 Score=103.33 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=13.2
Q ss_pred ceeecCCHHHHHHHHHHhhc
Q 018109 187 YWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 187 ~w~digtp~~~~~a~~~~l~ 206 (360)
...-+|+|....+..+.++.
T Consensus 50 ~~iaig~~~~r~~~~~~l~~ 69 (194)
T 3bfp_A 50 FFIAIGNNEIRKKIYQKISE 69 (194)
T ss_dssp EEECCCCHHHHHHHHHHHHT
T ss_pred EEEEeCCHHHHHHHHHHHHH
Confidence 45678888766666666554
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.3e-11 Score=103.88 Aligned_cols=102 Identities=17% Similarity=0.232 Sum_probs=75.6
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEe---ceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe------
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK---DTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK------ 307 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~------ 307 (360)
++.|++++.|. ++.|. ++.||++|.|++++.|. ..+.+|++ |.|+++|.|.
T Consensus 12 ~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~------------------~~I~~~~~I~~~~~~~ 73 (194)
T 3tv0_A 12 SVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEG------------------NLIEEQALIINAYPDN 73 (194)
T ss_dssp CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTT------------------CEECTTCEEEECCCSC
T ss_pred CCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCC------------------ccccCCcccccccccc
Confidence 44555555555 44443 78899999999999996 35788886 8888888883
Q ss_pred -----------eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 308 -----------ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 308 -----------~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
+++||+++.|+.++.+.+ ..++++++|+.++.|+.++ +||++|.||+|++|
T Consensus 74 ~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~gv-~IG~~~~IgagsvV 135 (194)
T 3tv0_A 74 ITPDTEDPEPKPMIIGTNNVFEVGCYSQA-MKMGDNNVIESKAYVGRNV-ILTSGCIIGACCNL 135 (194)
T ss_dssp C---------CCEEECSSCEECTTCEECC-SEECSSCEECTTCEECTTE-EECSSCEECTTCEE
T ss_pred cccccccCcCCceEECCcceEecceeEee-eeecccceecceeeECCeE-EECCCCEECCCCEE
Confidence 367888888888887754 3456666777777777775 56999999998875
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.5e-11 Score=105.81 Aligned_cols=45 Identities=13% Similarity=0.017 Sum_probs=21.1
Q ss_pred eeecCCHHHHHHHHHHhhcCCC-CCCccCCCCceeccCCCCCCcee
Q 018109 188 WEDIGTIRSFFEANLALTAHPP-MFSFYDATKPIYTSRRNLPPSKI 232 (360)
Q Consensus 188 w~digtp~~~~~a~~~~l~~~~-~~~~~~~~~~v~~~~~~~~~~~~ 232 (360)
+.-++++....+....+..... ...++++.+.+...+.+++++.+
T Consensus 75 ~iAIg~~~~R~~i~~~l~~~g~~~~~~i~~~a~i~~~v~IG~g~~I 120 (220)
T 4ea9_A 75 FVAIGDNRLRQKLGRKARDHGFSLVNAIHPSAVVSPSVRLGEGVAV 120 (220)
T ss_dssp EECCCCHHHHHHHHHHHHHTTCEECCEECTTCEECTTCEECSSCEE
T ss_pred EEecCCHHHHHHHHHHHHhcCCCcCCcCCCCCEECCCCEECCCCEE
Confidence 3456676665555555544321 12334444444444444444433
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.22 E-value=5.3e-11 Score=105.88 Aligned_cols=100 Identities=13% Similarity=0.112 Sum_probs=69.7
Q ss_pred EECCCCEEc-ceEEe-eeEEecCeEECCCCEEec----eEEECCcccchhHHHHhhhhCCCcceEECCCCeEee------
Q 018109 241 IISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD----TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE------ 308 (360)
Q Consensus 241 ~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~------ 308 (360)
.|++++.|. .+.+. ++.||++|.|++++.|.. .+.+|++ |.|+++|.|..
T Consensus 41 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~------------------~~Ig~~~~I~~~~~~~~ 102 (213)
T 3kwd_A 41 EIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSR------------------TNIQDGVVIHGLQQGRV 102 (213)
T ss_dssp EECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTT------------------CEECTTCEEEECSSCCE
T ss_pred cCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCC------------------CEECCCCEEEecCCCce
Confidence 444455544 34442 679999999999999975 4888886 99999999964
Q ss_pred ---------eEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 309 ---------CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 309 ---------~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
++||++|.|+.++.+.....++++++|+.++.|.. ++||+++.||+|++|
T Consensus 103 ig~~~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~--~~Ig~~~~Igags~V 161 (213)
T 3kwd_A 103 IGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFN--ARVGAGCVVMMHVLI 161 (213)
T ss_dssp ECTTSCEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE--EEECTTCEECSSCEE
T ss_pred eccCCcccceEECCCcEECCCcEEcCCCEECCCCEECCCCEEeC--cEECCCCEEcCCCEE
Confidence 67777777777777765444444444444444432 468999999998875
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.1e-11 Score=111.38 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=68.8
Q ss_pred CccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec----eEEECCcccch
Q 018109 212 SFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD----TMMLGADFYET 283 (360)
Q Consensus 212 ~~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~ 283 (360)
.++++++.+.+++.+++++.+ +.+.|. ++.||++|.|. ++.|. ++.||++|.|++++.|+. .+.+|++
T Consensus 8 ~~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~---- 83 (305)
T 3t57_A 8 VLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCN---- 83 (305)
T ss_dssp -CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSS----
T ss_pred CeECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCc----
Confidence 445666666666666666666 445554 88999999999 88886 899999999999999975 5777876
Q ss_pred hHHHHhhhhCCCcceEECCCCeEe--------------eeEecCCCEECCCcEEecC
Q 018109 284 DAEVASLLAEGRVPVGIGENTKIK--------------ECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 284 ~~~~~~~~~~~~~~~~ig~~~~i~--------------~~~i~~~~~ig~~~~~~~~ 326 (360)
+.|+++|.|. ...||+++.|++++.+...
T Consensus 84 --------------~~Ig~~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~g 126 (305)
T 3t57_A 84 --------------NIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRS 126 (305)
T ss_dssp --------------CEECTTCEEEECCCCTTCCTTCCEEEEECSSCEECTTCEEECC
T ss_pred --------------eEECCccEeCccccccceecCCCceEEECCCcccCceEEEeec
Confidence 6677776662 2566666666666666543
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.9e-11 Score=103.68 Aligned_cols=102 Identities=18% Similarity=0.097 Sum_probs=64.1
Q ss_pred eeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEece---EEECCcccchhHHHHhhhhCC
Q 018109 220 IYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEG 294 (360)
Q Consensus 220 v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~ 294 (360)
++..+.|.+++.+... .++.||++|.|+ ++.|. ++.||++|.|++++.|... +++|++
T Consensus 35 ig~~~~I~~~~~i~~~--~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~--------------- 97 (205)
T 3vbi_A 35 VGKNVLISKKASIYNP--GVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDF--------------- 97 (205)
T ss_dssp ECSSEEEBTTSEEESG--GGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTT---------------
T ss_pred ECCCCEECCCeEEccC--CeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCC---------------
Confidence 3344444444444110 145777777777 66664 7888999999999888543 777876
Q ss_pred CcceEECCCCeE--------------------------eeeEecCCCEECCCcEEecCCCcccccccCCceEE
Q 018109 295 RVPVGIGENTKI--------------------------KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYI 341 (360)
Q Consensus 295 ~~~~~ig~~~~i--------------------------~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i 341 (360)
|.|+++|.| .+++||++|.||+++.|.....++++++|+.++.+
T Consensus 98 ---~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV 167 (205)
T 3vbi_A 98 ---ANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMV 167 (205)
T ss_dssp ---CEECTTCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred ---CEECCCcEEEeCCCCcccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEE
Confidence 888888887 35777777777777777665444444333333333
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.9e-11 Score=108.76 Aligned_cols=107 Identities=19% Similarity=0.280 Sum_probs=65.0
Q ss_pred CccCCCCceeccCCCCCCcee-cCcee-eceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHh
Q 018109 212 SFYDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVAS 289 (360)
Q Consensus 212 ~~~~~~~~v~~~~~~~~~~~~-~~~~i-~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~ 289 (360)
..+++.+.+.+.+.|+++|.+ .++.| .++.||++|.|.. +++|+.++.|+++|+|+..+++.+.....
T Consensus 92 ~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~----~~~I~~~~~IG~~~~I~~~~~i~~~~~~~------ 161 (240)
T 3r8y_A 92 ARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDM----NAVLGGRATVGKNCHVGAGAVLAGVIEPP------ 161 (240)
T ss_dssp SEECTTCEEBSSCEECTTCEECTTCEECTTCEECTTCEECT----TCEECTTCEECTTCEECTTCEECCCCSCT------
T ss_pred CEECCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECC----CCEECCCCEECCCcEECCCcEECCCccCC------
Confidence 344555666666666666666 44455 3566666666661 44455555555555555444443310000
Q ss_pred hhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccc
Q 018109 290 LLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEA 332 (360)
Q Consensus 290 ~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~ 332 (360)
. ..++.||++|.|+ +|.|.++++||++++++..+.+.+.
T Consensus 162 -~---~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~ 201 (240)
T 3r8y_A 162 -S---AKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTED 201 (240)
T ss_dssp -T---SCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred -C---CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEECCC
Confidence 0 1138999999997 7999999999999999887665543
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-11 Score=111.48 Aligned_cols=161 Identities=7% Similarity=0.064 Sum_probs=106.2
Q ss_pred CCcEEEeeCcccCCCCCCc---------------cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCH-HHHHH
Q 018109 5 TGNSQVLAATQTPGEAGKR---------------WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-MDFVQ 68 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~~~---------------~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl-~~ll~ 68 (360)
.|+++++++.++..++... ..+||+++|+.+..+++ +++|++||+++..++ .+++
T Consensus 69 ~g~~~i~vv~~~~~~~i~~~~~~~~~~iv~~~~~~~~g~~~al~~a~~~~~--------~~lv~~~D~~~~~~~~~~~~- 139 (254)
T 1jyk_A 69 KGINDIIIIVGYLKEQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELA--------NSYVIDADNYLFKNMFRNDL- 139 (254)
T ss_dssp TTCCCEEEEECTTGGGGTHHHHHHCCEEEECTTTTTSCTHHHHHTTGGGCT--------TEEEEETTEEESSCCCCSCC-
T ss_pred CCCCeEEEEeCCcHHHHHHHHHhCCcEEEECCCccCCCcHHHHHHHHHHCC--------CEEEEeCCcccCHHHHHHHH-
Confidence 4677788777765443221 13699999999987763 489999999876663 3332
Q ss_pred HHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeH
Q 018109 69 NHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKK 148 (360)
Q Consensus 69 ~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~ 148 (360)
++++.+++ ...++ ...|+++ .|++|+|+.|.|+|. ..++++|+|+|++
T Consensus 140 ---~~~~~~t~---~~~~~-~~~~~v~-~d~~g~v~~~~e~~~------------------------~~~~~~Giy~~~~ 187 (254)
T 1jyk_A 140 ---TRSTYFSV---YREDC-TNEWFLV-YGDDYKVQDIIVDSK------------------------AGRILSGVSFWDA 187 (254)
T ss_dssp ---CSEEEEEC---EESSC-SSCCEEE-ECTTCBEEEEECCCS------------------------SEEBCCSEEEECH
T ss_pred ---hCCceEEE---EcccC-CCCeEEE-ECCCCeEEEEEECCC------------------------CCcEEEEEEEEcH
Confidence 22333332 23332 1368755 788899999998753 2478999999998
Q ss_pred HHHHH---HHHhhCCC---CcchhhcccccccccCceEEEEeC-CceeecCCHHHHHHHHHHhhc
Q 018109 149 EILLN---LLRWRFPT---ANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 149 ~vl~~---ll~~~~~~---~~~~~~~~l~~~i~~~~I~~~~~~-g~w~digtp~~~~~a~~~~l~ 206 (360)
+.+.. ++++.... ...+.+++++.++++.++.++.++ ++|.+|+||++|.++++.+..
T Consensus 188 ~~~~~l~~~l~~~~~~~~~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~ 252 (254)
T 1jyk_A 188 PTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILKN 252 (254)
T ss_dssp HHHHHHHHHHHHHHTTTCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhhh
Confidence 75433 33332111 111223455566667899999987 899999999999999887653
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.7e-11 Score=115.92 Aligned_cols=103 Identities=22% Similarity=0.235 Sum_probs=80.0
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCE
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 316 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ 316 (360)
++.|+++|.|. ++.|. ++.||++|.|++++.|+..+.+|++ +.||++|.|.+|+|++++.
T Consensus 244 ~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~ig~~~~i~~~~i~~~~~ 305 (401)
T 2ggo_A 244 KVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEK------------------NKIGASVEVKESVIMEGSK 305 (401)
T ss_dssp CEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEECSS------------------CEEEETCEEESEEECTTCE
T ss_pred CeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCC------------------CEECCCCEEecCEEcCCcE
Confidence 67778888886 66665 7889999999999999988888986 9999999999999999999
Q ss_pred ECCCcEEecCCCcccccccCCceEEeC-----------------------CeEEEcCCcEeCCCccC
Q 018109 317 IGKNVIIANSEGIQEADRSAEGFYIRS-----------------------GVTVILKNSVITDGFVI 360 (360)
Q Consensus 317 ig~~~~~~~~~~~~~~~~~~~~~~i~~-----------------------~~~~ig~~~~i~~g~~i 360 (360)
|+.++.+.+ ..++.++.|+.++.|.. +-++||+++.||+|++|
T Consensus 306 i~~~~~i~~-~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I 371 (401)
T 2ggo_A 306 IPHLSYVGD-SVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTI 371 (401)
T ss_dssp EEESCEEES-CEECTTCEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEE
T ss_pred ECCCceEcc-eEECCCcEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEE
Confidence 999888854 44555666666666641 12466777777777654
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=99.67 Aligned_cols=100 Identities=17% Similarity=0.257 Sum_probs=67.5
Q ss_pred EECCCCEEc-ceEEe-eeEEecCeEECCCCEEece---EEECCcccchhHHHHhhhhCCCcceEECCCCeEe-----eeE
Q 018109 241 IISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----ECI 310 (360)
Q Consensus 241 ~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-----~~~ 310 (360)
.|++++.|. ++.+. ++.||+++.|++++.|... +.+|++ +.|+++|.|. +++
T Consensus 12 ~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~------------------~~I~~~~~I~~~~~~~~~ 73 (173)
T 1v3w_A 12 RIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKY------------------SNVQDNVSIHTSHGYPTE 73 (173)
T ss_dssp EECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBTTBCEE
T ss_pred EECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCC------------------CEECCCcEEEecCCCCeE
Confidence 344444444 34442 6788888888888888764 777876 8888888886 588
Q ss_pred ecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 311 IDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 311 i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
||++|.|+.++.+.+ ..++++++|+.++.|..++ +||+++.||++++|
T Consensus 74 Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~i~~~~-~Ig~~~~Ig~~s~V 121 (173)
T 1v3w_A 74 IGEYVTIGHNAMVHG-AKVGNYVIIGISSVILDGA-KIGDHVIIGAGAVV 121 (173)
T ss_dssp ECSSCEECTTCEEES-CEECSSEEECTTCEECTTC-EECSSEEECTTCEE
T ss_pred ECCCCEECCCCEECC-CEECCCCEECCCCEEeCCC-EECCCCEECCCCEE
Confidence 888888888888854 3334444444444444443 55777777777754
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-10 Score=102.80 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=101.8
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCcEEEEEeecCC-CCCCcccEEEECCCC
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLPMDD-SRASDFGLMKINNEG 101 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~-~dl~~ll~~h~~~~a~~tll~~~~~~-~~~~~~g~v~~d~~g 101 (360)
..||++++ .+...++ .+.|++++||. +++ .+++++++.|++.++.++++....+. ..+..++ +..+++|
T Consensus 71 ~~g~~~~~-~~~~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g 142 (234)
T 2y6p_A 71 PSGSDRVL-YVVRDLD------VDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVK-VVLDREG 142 (234)
T ss_dssp CSHHHHHH-HHHTTCC------CSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCE-EEECTTS
T ss_pred ccchHHHH-HHHHhCC------CCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceE-EEEcCCC
Confidence 46888876 4444443 37899999999 877 67899999998877545555442111 1133344 3456789
Q ss_pred ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccc---cccccCc
Q 018109 102 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIP---ASANEQF 178 (360)
Q Consensus 102 ~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~---~~i~~~~ 178 (360)
++..|.+||...... .. ..+.+.++|+|+|+++.|..+.+. .+...... +.+. .+.++.+
T Consensus 143 ~v~~~~e~~~~~~~~------------~~---~~~~~~~~giy~~~~~~l~~~~~~-~~~~~~~~-d~~~~~~~~~~g~~ 205 (234)
T 2y6p_A 143 YALYFSRSPIPYFRK------------ND---TFYPLKHVGIYGFRKETLMEFGAM-PPSKLEQI-EGLEQLRLLENGIK 205 (234)
T ss_dssp BEEEEESSCCSCCSS------------CC---SSCCEEEEEEEEEEHHHHHHHHHS-CCCHHHHH-HTCTHHHHHHTTCC
T ss_pred CEeeeecCCCCcccc------------cc---cceeeEEEEEEEcCHHHHHHHHhC-CCCccchh-hHHHHHHHHHCCCe
Confidence 999999987531100 00 013467999999999998776432 11111111 2222 2223789
Q ss_pred eEEEEeCCceeecCCHHHHHHHHHHh
Q 018109 179 LKAYLFNDYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 179 I~~~~~~g~w~digtp~~~~~a~~~~ 204 (360)
+.+++.+++|.||+||++|..++..+
T Consensus 206 v~~~~~~~~~~dI~t~~dl~~a~~~~ 231 (234)
T 2y6p_A 206 IKVLITENYYHGVDTEEDLKIVEEKL 231 (234)
T ss_dssp CEEEECCSCCCCCCSHHHHHHHHHHC
T ss_pred EEEEEeCCcccCCCCHHHHHHHHHHH
Confidence 99999999999999999999998654
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=106.13 Aligned_cols=100 Identities=8% Similarity=0.221 Sum_probs=70.9
Q ss_pred EECCCCEEc-ceEE-eeeEEecCeEECCCCEEece----EEECCcccchhHHHHhhhhCCCcceEECCCCeEe-------
Q 018109 241 IISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK------- 307 (360)
Q Consensus 241 ~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~------- 307 (360)
.|++++.|. ++.| .++.||+++.|++++.|... +.+|++ |.|+++|.|.
T Consensus 61 ~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~------------------~~Ig~~~~I~~~~~~~~ 122 (247)
T 1qre_A 61 VIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDR------------------SNVQDGVVLHALETINE 122 (247)
T ss_dssp EECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTT------------------CEECTTCEEEECCSBCT
T ss_pred EECCCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCC------------------CEECCCeEEEecccccc
Confidence 445555555 4444 27889999999999999864 488876 8888888885
Q ss_pred -----------------eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 308 -----------------ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 308 -----------------~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
+++||++|.||+++.+.....++++++|+.++.|.. ++||+++.||+|++|
T Consensus 123 ~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~--v~Ig~~~~IgagsvV 190 (247)
T 1qre_A 123 EGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK--SKVGNNCVLEPRSAA 190 (247)
T ss_dssp TSCBCGGGCEEETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE--EEECTTCEECTTCEE
T ss_pred cCcccccceeeccCccCceEECCCCEECCCCEEcCCcEECCCCEECCCCEEec--eEECCCCEECCCCEE
Confidence 278888888888888876444555555555555544 466888888887764
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.1e-11 Score=111.68 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=14.9
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCCCcc
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQ 330 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~ 330 (360)
|.||.+|.|. ++.||++|.||+++++..+..++
T Consensus 209 v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Ig 242 (304)
T 3eg4_A 209 CFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIV 242 (304)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCCEE
T ss_pred CEECCCCEEcCCcEECCCcEECCCCEEcCCeEEC
Confidence 4444444443 44444444444444444443333
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=109.90 Aligned_cols=111 Identities=18% Similarity=0.243 Sum_probs=56.8
Q ss_pred CceeccCCCCCCcee-cCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCC
Q 018109 218 KPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 294 (360)
Q Consensus 218 ~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 294 (360)
..+.+.+.+.+++.| +++.|....|+.++.|+ ++.|. +++||+++.||++|.|+..+.++..... +.
T Consensus 146 ~~I~p~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~--------~~-- 215 (316)
T 3tk8_A 146 FRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEP--------LQ-- 215 (316)
T ss_dssp CEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSS--------TT--
T ss_pred cEEeCCeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCccc--------cc--
Confidence 444445455555555 33444333444444444 44443 3566666666666666655555431000 00
Q ss_pred CcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCc
Q 018109 295 RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEG 338 (360)
Q Consensus 295 ~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~ 338 (360)
..++.||++|.|+ +|+|+++++||++|+|+.++.+.++..|.|.
T Consensus 216 ~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~t~I~d~ 260 (316)
T 3tk8_A 216 ANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDR 260 (316)
T ss_dssp SCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEET
T ss_pred CCCcEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeeeccc
Confidence 0016666666665 5666666666666666666655555544443
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-10 Score=105.44 Aligned_cols=88 Identities=15% Similarity=0.295 Sum_probs=45.4
Q ss_pred ceEECCCCEEcceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe---------e
Q 018109 239 DSIISHGSFITSSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK---------E 308 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~---------~ 308 (360)
++.|+++|.|.+..+. ++.||++|.|++++.|++.+.+|++ |.|+.++.|. +
T Consensus 116 ~~~Ig~g~~I~~~~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~------------------v~I~~~~~i~g~~~~~~~~~ 177 (276)
T 3gos_A 116 GAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKN------------------VHLSGGVGIGGVLEPLQANP 177 (276)
T ss_dssp TCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTT------------------CEECTTCEECCCCSSTTSCC
T ss_pred CCEECCCCEEcCCEEcCCeEECCCCEECCCCEECCCCEECCC------------------CEECCCCEECCccccCCCCC
Confidence 4555555555532332 4555555555555555555555554 5555555552 3
Q ss_pred eEecCCCEECCCcEEecCCCcccccccCCceEEeCC
Q 018109 309 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 344 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (360)
++||++|.||++++|.....++++++|+.++.|..+
T Consensus 178 v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~ 213 (276)
T 3gos_A 178 TIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQS 213 (276)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 556666666666655554444444444444444433
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-09 Score=99.10 Aligned_cols=167 Identities=13% Similarity=0.106 Sum_probs=107.9
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eee-cCHHHHHHHHHHcC-CcEEEEEeecCC----CCCCcccEEE
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSG-ADITISCLPMDD----SRASDFGLMK 96 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~-~dl~~ll~~h~~~~-a~~tll~~~~~~----~~~~~~g~v~ 96 (360)
+..|| ++++.+...+.. ...+.|+++.||. +.+ ..+.++++.|++.+ +.++.++.+..+ ..|..++ +.
T Consensus 72 ~~~Gt-~~i~~a~~~~~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~k-vv 146 (253)
T 4fcu_A 72 HPSGT-DRLSEVARIKGW---DADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVK-VV 146 (253)
T ss_dssp CCCHH-HHHHHHHHHHTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCE-EE
T ss_pred CCChH-HHHHHHHHhcCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCccE-EE
Confidence 45687 478888887752 1147899999999 554 55899999998873 444444444322 1244454 55
Q ss_pred ECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchh-h---ccccc
Q 018109 97 INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFG-S---EIIPA 172 (360)
Q Consensus 97 ~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~-~---~~l~~ 172 (360)
.|++|+++.|.++|-......... .+.......+.+.|+|+|++++|.++. +..+. .+. . +.|..
T Consensus 147 ~d~~g~~l~fsr~~ip~~r~~~~~--------~~~~~~~~~~~~~GiY~f~~~~l~~~~-~~~~~--~le~~e~le~lr~ 215 (253)
T 4fcu_A 147 MSKQNEALYFSRATIPYDRDGAKR--------DEPTLHTQAFRHLGLYAYRVSLLQEYV-TWEMG--KLEKLESLEQLRV 215 (253)
T ss_dssp ECTTSBEEEEESSCCSCCTTTSSS--------SSCCCCSCCEEEEEEEEEEHHHHHHHT-TSCCC--HHHHHHTCTTHHH
T ss_pred ECCCCeEEEecCCCCCCCCCcccc--------cccccccceeEEEEEEEeCHHHHHHHH-hCCCC--cccchhHHHHHHH
Confidence 778999999999875422100000 000000246789999999999998764 32222 221 1 22332
Q ss_pred ccccCceEEEEeCCc-eeecCCHHHHHHHHHHhhc
Q 018109 173 SANEQFLKAYLFNDY-WEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 173 ~i~~~~I~~~~~~g~-w~digtp~~~~~a~~~~l~ 206 (360)
+-.+.+|.++..+++ |.+++||++|.++++.+.+
T Consensus 216 l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~ 250 (253)
T 4fcu_A 216 LENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVE 250 (253)
T ss_dssp HHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGG
T ss_pred HHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHh
Confidence 234789999999999 9999999999999876544
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-10 Score=109.18 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=7.5
Q ss_pred eEecCCCEECCCcEE
Q 018109 309 CIIDKNARIGKNVII 323 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~ 323 (360)
++||++|.||++++|
T Consensus 257 V~IGdnv~IGAnAtI 271 (347)
T 3r5d_A 257 ISVGEGCLIGANAGI 271 (347)
T ss_dssp CEECTTCEECTTCEE
T ss_pred eEECCCCEECCCCEE
Confidence 455555555555554
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.5e-10 Score=97.87 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=41.8
Q ss_pred ceEEC--CCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecC
Q 018109 239 DSIIS--HGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK 313 (360)
Q Consensus 239 ~~~i~--~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~ 313 (360)
++.|| ++|.|. ++.|. ++.||++|.|++++.|++.+.+|++ +.|+.++.|. +++||+
T Consensus 87 ~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~Ig~ 148 (194)
T 3bfp_A 87 SAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEF------------------SHVSVGAKCAGNVKIGK 148 (194)
T ss_dssp TCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT------------------CEECTTCEECTTCEECT
T ss_pred CceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCC------------------CEECCCCEECCCcEECC
Confidence 45566 666666 43332 4555555555555555544444443 4555555544 255555
Q ss_pred CCEECCCcEEecCCCcccccccCCceEEeCCeE
Q 018109 314 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVT 346 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 346 (360)
+|.||+++++.. ..+|++++.|+.+++
T Consensus 149 ~~~Ig~~~~i~~------~~~Ig~~~~Igagsv 175 (194)
T 3bfp_A 149 NCFLGINSCVLP------NLSLADDSILGGGAT 175 (194)
T ss_dssp TCEECTTCEECT------TCEECTTCEECTTCE
T ss_pred CCEEcCCCEECC------CCEECCCCEECCCCE
Confidence 555555544443 334444444444443
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9e-10 Score=98.31 Aligned_cols=90 Identities=12% Similarity=0.222 Sum_probs=48.1
Q ss_pred ccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhh
Q 018109 213 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL 290 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 290 (360)
.+.....+...+.|.+++.+.. ++.||++|.|. ++.|. +++||++|.|++++.|...+.+|++
T Consensus 107 ~i~~~v~IG~g~~I~~~~~i~~----~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~----------- 171 (220)
T 4ea9_A 107 VVSPSVRLGEGVAVMAGVAINA----DSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGER----------- 171 (220)
T ss_dssp EECTTCEECSSCEECTTCEECT----TCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTT-----------
T ss_pred EECCCCEECCCCEEcCCCEECC----CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCC-----------
Confidence 3445556666666666666643 45566666666 44443 4555555555555555554444443
Q ss_pred hhCCCcceEECCCCeEe-eeEecCCCEECCCcEEe
Q 018109 291 LAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIA 324 (360)
Q Consensus 291 ~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~ 324 (360)
+.||.++.|. ++.||++|.||+++++.
T Consensus 172 -------~~Ig~~~~i~~~~~Ig~~~~igagsvv~ 199 (220)
T 4ea9_A 172 -------AFLGVGARVIPGVTIGADTIVGAGGVVV 199 (220)
T ss_dssp -------CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred -------CEECCCCEEcCCcEECCCCEECCCCEEc
Confidence 4555555443 34444444444444443
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.7e-10 Score=111.42 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=79.0
Q ss_pred EECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEEC
Q 018109 241 IISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 318 (360)
Q Consensus 241 ~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig 318 (360)
.|++++.|. ++.+. ++.||++|.|++++.| ..+++|++ +.|+++|.|.+|+||++|.|+
T Consensus 275 ~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I-~~v~IG~~------------------~~I~~~~~I~~~vIG~~~~Ig 335 (496)
T 3c8v_A 275 GSASGASVSGYAVIKGDTVIGENVLVSQRAYL-DNAWMGKG------------------SNAQENCYIINSRLERNCVTA 335 (496)
T ss_dssp -CCTTCEECTTSEEESSCEECTTCEECTTCEE-EEEEECTT------------------CEECTTCEEEEEEEEESCEEC
T ss_pred ccCCCcEECCCcEEeCCeEECCCCEECCCcEE-eceEecCC------------------CEECCCceEeceEeCCCCEEC
Confidence 344455554 34443 7899999999999999 55667875 999999999999999999999
Q ss_pred CCcEEecCCCcccccccCCceEEeCC---eEEEcCCcEeCCCccC
Q 018109 319 KNVIIANSEGIQEADRSAEGFYIRSG---VTVILKNSVITDGFVI 360 (360)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~ig~~~~i~~g~~i 360 (360)
+++++.+ ..++++++||.++.|..+ .++||++|.||+|++|
T Consensus 336 ~~a~I~g-v~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV 379 (496)
T 3c8v_A 336 HGGKIIN-AHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTII 379 (496)
T ss_dssp TTCEEES-EEEEETCEECTTCEEECCSSSCEEECTTCEECTTCEE
T ss_pred CCcEEcC-ceECCCcEECCCCEEeCCCCcceEECCCCEECCCCEE
Confidence 9999976 566777777777777766 1366999999999875
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6e-10 Score=99.19 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=57.2
Q ss_pred ceEECCCCEEc-c-eEEe----eeEEecCeEECCCCEEec---eEEECCcccchhHHHHhhhhCCCcceEECCCCeE---
Q 018109 239 DSIISHGSFIT-S-SFIE----HSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI--- 306 (360)
Q Consensus 239 ~~~i~~~~~i~-~-~~i~----~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i--- 306 (360)
+..|+++|.|. . +.+. ++.||++|.|++++.|.. .+.+|++ |.|++.+.+
T Consensus 36 ~v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~------------------~~Ig~~~ii~~~ 97 (215)
T 2wlg_A 36 SVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAK------------------TTMGNGEITIAE 97 (215)
T ss_dssp EEEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTT------------------CEECSEEEEECT
T ss_pred EEEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCC------------------CEECCEEEEEeC
Confidence 35666666666 3 2232 255666666666666652 3555554 666664333
Q ss_pred -eeeEecCCCEECCCcEEecCCC-------------cccccccCCceEEeCCeE-----EEcCCcEeCCCcc
Q 018109 307 -KECIIDKNARIGKNVIIANSEG-------------IQEADRSAEGFYIRSGVT-----VILKNSVITDGFV 359 (360)
Q Consensus 307 -~~~~i~~~~~ig~~~~~~~~~~-------------~~~~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~ 359 (360)
.+++||++|.|++++.+.++.. ..+.++|+|+++|+.+++ +||++|.|+++++
T Consensus 98 ~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsv 169 (215)
T 2wlg_A 98 KGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTV 169 (215)
T ss_dssp TCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCE
T ss_pred CCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCE
Confidence 4566777777777777765421 112345566666655553 4566666666664
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.5e-09 Score=96.89 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=109.2
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCcEEEEEeecCCCC---CCcccEEEEC
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPMDDSR---ASDFGLMKIN 98 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~---~~~~g~v~~d 98 (360)
+..||+ .+..+...+.. ...+.|++++||. +...++.++++.|++.++++++++.++.++. ...|..+..+
T Consensus 72 ~~~g~~-~~~~~~~~l~~---~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (262)
T 1vic_A 72 HNSGTE-RLAEVVEKLAI---PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTD 147 (262)
T ss_dssp SCCHHH-HHHHHHHHTTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEEC
T ss_pred ccCChH-HHHHHHHHhcc---CCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEEC
Confidence 456787 46566666642 1247899999998 4456789999999988888888888776520 1234445557
Q ss_pred CCCceEEEEecCCcccccccccc-ccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccc--cc-
Q 018109 99 NEGRVLSFSEKPKGKDLKAMAVD-TTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPA--SA- 174 (360)
Q Consensus 99 ~~g~V~~~~ekp~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~--~i- 174 (360)
++|+++.|.+++..........+ ..-...+| ...+.++|+|+|++++|..+... .+...+.. ++++. ++
T Consensus 148 ~~g~v~~f~~~~~~~~r~~~~~~~~~~~~~~p-----~~~~~~~giy~~~~~~l~~~~~~-~~~~~~~~-e~~~~~~~l~ 220 (262)
T 1vic_A 148 KDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLS-----DAYLRHIGIYAYRAGFIKQYVQW-APTQLENL-EKLEQLRVLY 220 (262)
T ss_dssp TTSBEEEEESSCSSCCHHHHTTCSCGGGCCCC-----TTCEEEEEEEEEEHHHHHHHHHS-CCCHHHHH-HTCTTHHHHH
T ss_pred CCCCEeeeecCCCCcCCccccccccccccccc-----cceEEEEEEEEeeHHHHHHHHhC-CCCchhhh-hhHHHHHHHH
Confidence 78899999887532110000000 00000011 13578999999999988765322 11111111 22222 33
Q ss_pred ccCceEEEEeC-CceeecCCHHHHHHHHHHhhcCC
Q 018109 175 NEQFLKAYLFN-DYWEDIGTIRSFFEANLALTAHP 208 (360)
Q Consensus 175 ~~~~I~~~~~~-g~w~digtp~~~~~a~~~~l~~~ 208 (360)
.+.++.+++.+ ++|.||+||++|..++..+....
T Consensus 221 ~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~~~ 255 (262)
T 1vic_A 221 NGERIHVELAKEVPAVGVDTAEDLEKVRAILAANG 255 (262)
T ss_dssp TTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 36799999998 89999999999999998876543
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-10 Score=106.33 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=24.8
Q ss_pred eEECCCCeEee---------eEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE
Q 018109 298 VGIGENTKIKE---------CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT 346 (360)
Q Consensus 298 ~~ig~~~~i~~---------~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 346 (360)
+.|+.++.|.. +.||++|.||++++| ...++++++|+.|++|..+++
T Consensus 214 v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkdt~ 269 (332)
T 3fsy_A 214 SDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAGTR 269 (332)
T ss_dssp CEECTTCEECSBCC---CCBCEECTTCEECTTCEE--CSCBCSSCEECTTCEECTTCE
T ss_pred CEECCCCEEcCCCCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCE
Confidence 55555555532 666666666666666 444444444444444444443
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=99.91 Aligned_cols=85 Identities=20% Similarity=0.292 Sum_probs=54.1
Q ss_pred ceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEec---eEEECCcccchhHHHHhhhhCCCcceEECCCCeEee---
Q 018109 239 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE--- 308 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~--- 308 (360)
++.||++|.|. ++.+. +++||++|.|++++.|.. .+.+|++ |.||++|.|.+
T Consensus 85 ~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~------------------~~Ig~~~~I~~~~~ 146 (252)
T 3jqy_B 85 YVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHD------------------CMIARDVILRASDG 146 (252)
T ss_dssp EEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTT------------------CEECSSEEEECSCS
T ss_pred eEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCC------------------CEEcCCcEEecCCC
Confidence 45677777777 55553 567777777777777775 5666665 77777777754
Q ss_pred -----------------eEecCCCEECCCcEEecCCCcccccccCCceEE
Q 018109 309 -----------------CIIDKNARIGKNVIIANSEGIQEADRSAEGFYI 341 (360)
Q Consensus 309 -----------------~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i 341 (360)
++||++|.||+++.+.....++++++|+.++.|
T Consensus 147 ~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV 196 (252)
T 3jqy_B 147 HPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIV 196 (252)
T ss_dssp SCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEE
T ss_pred cccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEE
Confidence 467777777777776665444444444444433
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-09 Score=101.51 Aligned_cols=85 Identities=11% Similarity=0.110 Sum_probs=40.1
Q ss_pred eEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecC-CCc-cccc
Q 018109 256 SVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANS-EGI-QEAD 333 (360)
Q Consensus 256 ~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~-~~~-~~~~ 333 (360)
+.||+++.|++++.|...+.+|++ +.|+.++.+. |.||++|.|++++.|... .+. .+.+
T Consensus 197 A~IGeGv~Igp~a~Vn~na~IGdg------------------~iI~~~a~ig-v~IGdnv~IgpGa~IgG~~~~~~~~~V 257 (347)
T 3r5d_A 197 AYIGEGTTVMHEGFVNFNAGTEGP------------------GMIEGRVSAG-VFVGKGSDLGGGCSTMGTLSGGGNIVI 257 (347)
T ss_dssp EEECTTEEECTTCEECTTEEESSS------------------EEECSEECTT-CEECTTEEECTTCEECC------CCCC
T ss_pred CEECCCCEECCCCEECCCCEECCC------------------cEEcCCceEe-EEECCCCEECCCCEEccccCCCCccce
Confidence 445555555555555544444443 4554444443 555555555555555432 111 1123
Q ss_pred ccCCceEEeCCeE---EEcCCcEeCCCcc
Q 018109 334 RSAEGFYIRSGVT---VILKNSVITDGFV 359 (360)
Q Consensus 334 ~~~~~~~i~~~~~---~ig~~~~i~~g~~ 359 (360)
+|||+++||.+++ +||++|.||+|++
T Consensus 258 ~IGdnv~IGAnAtIGVtIGd~~iIGAGSV 286 (347)
T 3r5d_A 258 SVGEGCLIGANAGIGIPLGDRNIVEAGLY 286 (347)
T ss_dssp EECTTCEECTTCEECSCBCTTCEECTTCE
T ss_pred EECCCCEECCCCEEeeEECCCCEECCCCE
Confidence 4444444444443 3455555555554
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=101.35 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=7.9
Q ss_pred ccEEEECCCCceEEEE
Q 018109 92 FGLMKINNEGRVLSFS 107 (360)
Q Consensus 92 ~g~v~~d~~g~V~~~~ 107 (360)
+|...+..+|.+++..
T Consensus 12 ~g~a~~~~~g~~ld~w 27 (332)
T 3fsy_A 12 IGLATLAADGSVLDTW 27 (332)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred EEEEEEcCCCcEEeec
Confidence 4444444555555443
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-09 Score=93.29 Aligned_cols=116 Identities=14% Similarity=0.162 Sum_probs=69.7
Q ss_pred eeccCCCCCCcee--cCceeeceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhC
Q 018109 220 IYTSRRNLPPSKI--DDSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAE 293 (360)
Q Consensus 220 v~~~~~~~~~~~~--~~~~i~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 293 (360)
+...+.+.+|... .. ++.||++|.|. ++.|. ..+||++|.|++++.|....+..+. ..+.. ...+.+
T Consensus 59 ig~~~~I~~p~~~~ig~----~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~-~~~~~--~~~~~~ 131 (195)
T 3nz2_A 59 LGHKSCVQPPFHCEFGK----TIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDY-RRRQA--WETICK 131 (195)
T ss_dssp ECTTCEECSSEEESCST----TEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSG-GGTTT--CCCEEC
T ss_pred cCCCcEEcCCeEEEeCC----CeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCccc-ccccc--cceecC
Confidence 4445556665332 22 67788888888 66664 3589999999999999887655432 11100 000111
Q ss_pred CCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcE
Q 018109 294 GRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSV 353 (360)
Q Consensus 294 ~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~ 353 (360)
++.||++|+|+ +|+|.++++||++++|+.++.+.+. +.+++++.|.+++
T Consensus 132 ---~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--------vp~~~v~~G~Pa~ 181 (195)
T 3nz2_A 132 ---PIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQD--------VPPDTLVGGTPAR 181 (195)
T ss_dssp ---CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--------BCSSEEEETTTTE
T ss_pred ---CeEECCCCEEcCCCEECCCCEECCCCEECCCCEEccc--------cCCCcEEEccCCE
Confidence 26777777776 6777777777777777666554433 2344455555554
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-09 Score=93.82 Aligned_cols=117 Identities=19% Similarity=0.166 Sum_probs=71.4
Q ss_pred eeccCCCCCCcee--cCceeeceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhC
Q 018109 220 IYTSRRNLPPSKI--DDSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAE 293 (360)
Q Consensus 220 v~~~~~~~~~~~~--~~~~i~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 293 (360)
++..+.|.+|..+ .. ++.||++|.|. ++.+. .++||++|.|++++.|....+-.+. ..+. .+..-
T Consensus 58 ig~~~~I~~~~~~~~g~----~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~-~~~~----~~~~~ 128 (203)
T 1krr_A 58 VGENAWVEPPVYFSYGS----NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHH-ELRK----NGEMY 128 (203)
T ss_dssp CCSSCEECSCEEESCST----TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSST-TTCT----TCCBE
T ss_pred cCCCcEEcCCeEEEeCC----CeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccch-hhcc----cCcee
Confidence 3445666666543 22 67889999988 77775 3789999999999998765432110 0000 00000
Q ss_pred CCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 294 GRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 294 ~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
+ .++.||++|+|+ +|+|..+++||++|+|+.++.+.+. |.+++++.|..+++
T Consensus 129 ~-~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--------vp~~~vv~G~PArv 181 (203)
T 1krr_A 129 S-FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKD--------IPPNVVAAGVPCRV 181 (203)
T ss_dssp E-CCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--------BCTTEEEETTTTEE
T ss_pred C-CCcEECCCeEECCCCEEeCCeEECCCCEECCCCEECCC--------cCCCcEEEccCcEE
Confidence 0 127778877776 6777777777777777776555443 33444555555543
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-09 Score=95.63 Aligned_cols=157 Identities=17% Similarity=0.231 Sum_probs=102.5
Q ss_pred ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-e-eecCHHHHHHHHHHc-CCcEEEEEeecCCCC-CCcccE--EE
Q 018109 23 RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQNHRQS-GADITISCLPMDDSR-ASDFGL--MK 96 (360)
Q Consensus 23 ~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i-~~~dl~~ll~~h~~~-~a~~tll~~~~~~~~-~~~~g~--v~ 96 (360)
++..||++++..+. .++ .+.|++++||. + ...++.++++.|++. ++++++++.+. ++. ..+++. +.
T Consensus 72 ~~~~g~~~~~~~~~-~~~------~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 143 (245)
T 1h7e_A 72 DHESGTDRLVEVMH-KVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAI-SAAEAAEPSTVKVV 143 (245)
T ss_dssp CCSSHHHHHHHHHH-HSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEE-CHHHHTCTTSCEEE
T ss_pred ccCCcHHHHHHHHH-hCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecC-CHHHhcCCCCcEEE
Confidence 34568887665444 443 37899999999 3 455689999999988 78888777766 210 011222 22
Q ss_pred ECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcch-hhcccccc--
Q 018109 97 INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF-GSEIIPAS-- 173 (360)
Q Consensus 97 ~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~-~~~~l~~~-- 173 (360)
.+++|++..|.+++.....+ +. ..+.+.++|+|+|+++.|..++ .... ..+ ..+.++.+
T Consensus 144 ~~~~g~~~~~~~~~~~~~r~-------------~~--~~~~~~~~g~y~~~~~~l~~~~-~~~~--~~~~~td~~~~~~~ 205 (245)
T 1h7e_A 144 VNTRQDALYFSRSPIPYPRN-------------AE--KARYLKHVGIYAYRRDVLQNYS-QLPE--SMPEQAESLEQLRL 205 (245)
T ss_dssp ECTTCBEEEEESSCSSCCTT-------------GG--GCCEEEEEEEEEEEHHHHHHGG-GSCC--CHHHHHHTCTTHHH
T ss_pred ECCCCcEEEeecCCCCCCcc-------------cc--cCceeEEEEEEEcCHHHHHHHH-hCCC--CccccchhhHHHHH
Confidence 35788999998875431100 00 0135779999999999886654 2211 111 11333332
Q ss_pred -cccCceEEEEeCCceeecCCHHHHHHHHHHhh
Q 018109 174 -ANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 174 -i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l 205 (360)
-.+.++.+++.+++|.||+||++|..++..+.
T Consensus 206 ~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~ 238 (245)
T 1h7e_A 206 MNAGINIRTFEVAATGPGVDTPACLEKVRALMA 238 (245)
T ss_dssp HHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHH
T ss_pred HHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 13678999999999999999999999987654
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=7.1e-09 Score=90.46 Aligned_cols=114 Identities=20% Similarity=0.216 Sum_probs=68.3
Q ss_pred cCCCCCCcee--cCceeeceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCc
Q 018109 223 SRRNLPPSKI--DDSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRV 296 (360)
Q Consensus 223 ~~~~~~~~~~--~~~~i~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (360)
.+.|.+|+.+ .. ++.||+++.|+ ++.|. .+.||++|.|++++.|..+.+..+. . .......-+ .
T Consensus 64 ~~~I~~~~~~~~g~----~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~-~----~~~~~~~~~-~ 133 (190)
T 3hjj_A 64 KAQINPDFRCDYGY----NIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHP-V----ERNSGKEYG-K 133 (190)
T ss_dssp CCEECSSCEESSST----TEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSH-H----HHTSSEEEE-C
T ss_pred CcEECCCEEEEeCC----ceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCch-h----hcccccccc-C
Confidence 4555565544 22 56777777777 66664 5789999999999999876654431 0 000000001 1
Q ss_pred ceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 297 PVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 297 ~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
++.||++|+|+ +|+|.++++||++|+|+.++.+.+. +.+++++.|..+++
T Consensus 134 ~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--------vp~~~v~~G~Pa~~ 184 (190)
T 3hjj_A 134 PVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKD--------VPNNVVVGGNPAKV 184 (190)
T ss_dssp CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--------BCTTEEEETTTTEE
T ss_pred CeEECCCCEECCCCEECCCCEECCCCEECCCCEECcc--------cCCCCEEEccCCEE
Confidence 26777777775 6777777777777777665554433 33455566666543
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.94 E-value=5.7e-09 Score=91.82 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=68.4
Q ss_pred ccCCCCCCceec-CceeeceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCc
Q 018109 222 TSRRNLPPSKID-DSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRV 296 (360)
Q Consensus 222 ~~~~~~~~~~~~-~~~i~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (360)
..+.+.+|..+. + .++.||++|.|+ ++.|. .++||++|.|+++|.|..+.+..+. .. ...+...+ .
T Consensus 59 ~~~~i~~~~~~~~g---~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~-~~----~~~~~~~~-~ 129 (199)
T 3ftt_A 59 DNVSISIPFDTDYG---WNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNF-HH----RNEGFEKA-G 129 (199)
T ss_dssp SSEEECSSEEESSS---TTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSH-HH----HHTTEEEE-C
T ss_pred CCeEEeCCEEEEec---CCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCcc-cc----ccccceec-C
Confidence 344555555551 1 156777777777 66664 4689999999999999766543321 00 00000001 1
Q ss_pred ceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcE
Q 018109 297 PVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSV 353 (360)
Q Consensus 297 ~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~ 353 (360)
++.||++|+|+ +|+|.++++||++++|+.++.+.+. +.+++++.|..++
T Consensus 130 ~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--------vp~~~v~~G~Pak 179 (199)
T 3ftt_A 130 PIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKD--------IPPHSLAVGNPCK 179 (199)
T ss_dssp CEEECSSEEECTTCEECTTCEECTTCEECTTCEECSC--------BCTTEEEETTTTE
T ss_pred CeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECcc--------cCCCCEEEEECCE
Confidence 27777777775 6777777777777777766555443 2344455555554
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.5e-09 Score=90.60 Aligned_cols=118 Identities=18% Similarity=0.189 Sum_probs=68.4
Q ss_pred eeccCCCCCCceec-CceeeceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCC
Q 018109 220 IYTSRRNLPPSKID-DSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 294 (360)
Q Consensus 220 v~~~~~~~~~~~~~-~~~i~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 294 (360)
++..+.+.+|..+. + .++.||+++.|. ++.+. ...||++|.|++++.|....+..+. ........-+
T Consensus 59 ig~~~~I~~~~~~~~g---~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~-----~~~~~~~~~~ 130 (188)
T 3srt_A 59 VGKQINVEQNIRCDYG---YNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDA-----QLRNSGIEYG 130 (188)
T ss_dssp CCSCEEECSCEEESSS---TTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSH-----HHHHTTEEEE
T ss_pred cCCCCEEcCCEEEEeC---CCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCch-----hhccccceEC
Confidence 34445566665551 1 267788888888 66665 3589999999999999654333221 0000000000
Q ss_pred CcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 295 RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 295 ~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
.++.||++|+|+ +|+|.++++||++|+|+..+.+.+. +.++.+++|.++++
T Consensus 131 -~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--------vp~~~v~~G~Pa~v 182 (188)
T 3srt_A 131 -SPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKD--------IPPNTVAVGNPCRV 182 (188)
T ss_dssp -CCEEECSSCEECTTCEECTTCEECSSEEECTTCEECSC--------BCSSEEEETTTTEE
T ss_pred -CCcEECCCcEEcCCCEECCCcEECCCCEECCCCEECcc--------cCCCCEEEccCCEE
Confidence 126777777775 6666667777777766665544433 33455566666654
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=102.20 Aligned_cols=84 Identities=14% Similarity=0.284 Sum_probs=59.4
Q ss_pred ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEee--------e
Q 018109 239 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE--------C 309 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~--------~ 309 (360)
++.|++++.|+ .+.+++++||++++|+..+.++++. +|.+ |.||.+|.+-+ +
T Consensus 352 ~~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~-Ig~~------------------v~IG~g~i~~n~dg~~~~~t 412 (501)
T 3st8_A 352 GTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDAD-IGEY------------------SNIGASSVFVNYDGTSKRRT 412 (501)
T ss_dssp TCEECTTCEEEETEEEESCEECTTCEEEESCEEESEE-ECSS------------------CEECTTCEEECBCSSSBCCE
T ss_pred CcEEccccccCCeEEEccceecCCcEEeccceecCce-EcCC------------------CEECCCEEEEcccCCcccCC
Confidence 56777777777 5666777777777777777777654 4544 78888877632 6
Q ss_pred EecCCCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 310 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 310 ~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
+||++|+||.++.+.. +++||++++|++|+++
T Consensus 413 ~IGd~~~iG~~~~l~~------~v~Ig~~~~i~ags~v 444 (501)
T 3st8_A 413 TVGSHVRTGSDTMFVA------PVTIGDGAYTGAGTVV 444 (501)
T ss_dssp EECTTCEECTTCEEES------SEEECTTCEECTTCEE
T ss_pred EECCCcEECCCCEEcC------CcEECCCCEECCCCEE
Confidence 6777777777666665 5778888888877754
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.6e-09 Score=99.45 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=20.4
Q ss_pred eEEEEeCCceeecCC--HHHHHHHHHHhhc
Q 018109 179 LKAYLFNDYWEDIGT--IRSFFEANLALTA 206 (360)
Q Consensus 179 I~~~~~~g~w~digt--p~~~~~a~~~~l~ 206 (360)
++++....+|.|.|. |+.+......+..
T Consensus 163 ~~g~l~~~~Wt~~G~~~~~~f~~~~~~l~~ 192 (387)
T 2rij_A 163 AFGLLSNVAWSDDKPIELEYLRANEMRLKM 192 (387)
T ss_dssp HHHHSCCEEEETTEEECHHHHHHHHHHHHH
T ss_pred hhccCceeeeccCcccCHHHHHHHHHHHHh
Confidence 344444569999999 7888888877763
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-08 Score=87.72 Aligned_cols=87 Identities=24% Similarity=0.286 Sum_probs=50.9
Q ss_pred ceEECCCCEEc-ceEE---eeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecC
Q 018109 239 DSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK 313 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~ 313 (360)
++.||+++.|. ++++ .+.+||++|.|++++.|....+-.+. ......+.- +.++.||++|+|+ +|+|..
T Consensus 74 ~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~-----~~~~~~~~~-~~~v~IGd~v~IG~~~~I~~ 147 (185)
T 2p2o_A 74 NIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDP-----HERNSGLEY-GKPVVIGHNVWIGGRAVINP 147 (185)
T ss_dssp TEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSH-----HHHHTCCBE-ECCEEECSSCEECTTCEECT
T ss_pred CEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCCh-----hhcccCccc-cCCeEEcCCeEECCCCEECC
Confidence 66778888887 6666 36889999999999999654321110 000000000 0126666666665 566666
Q ss_pred CCEECCCcEEecCCCccc
Q 018109 314 NARIGKNVIIANSEGIQE 331 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~ 331 (360)
+++||++++|+.++.+.+
T Consensus 148 gv~IG~~~vIgagsvV~~ 165 (185)
T 2p2o_A 148 GVTIGDNAVIASGAVVTK 165 (185)
T ss_dssp TCEECTTCEECTTCEECS
T ss_pred CCEECCCCEECCCCEECC
Confidence 666666666665544443
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-08 Score=90.39 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=21.6
Q ss_pred eEECCCCEEc-ceEEe----eeEEecCeEECCCCEEe---ceEEECCc
Q 018109 240 SIISHGSFIT-SSFIE----HSVVGIRSRINANVHLK---DTMMLGAD 279 (360)
Q Consensus 240 ~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~---~~~~~~~~ 279 (360)
+.||++|.|. ++.+. ++.||++|.|++++.+. ..+.+|++
T Consensus 59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~ 106 (215)
T 2wlg_A 59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKD 106 (215)
T ss_dssp EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTT
T ss_pred EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCC
Confidence 5666666666 44443 26666666666644332 34455554
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.2e-09 Score=91.76 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=14.5
Q ss_pred eeEEecCeEECCCCEEe--ceEEECCc
Q 018109 255 HSVVGIRSRINANVHLK--DTMMLGAD 279 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~--~~~~~~~~ 279 (360)
++.||+++.|++++.|. ..+.+|++
T Consensus 76 ~v~IG~~~~I~~~~~i~~~~~i~IG~~ 102 (195)
T 3nz2_A 76 TIRIGDHTFINMNVVMLDGAPITIGDH 102 (195)
T ss_dssp TEEECTTCEECTTEEEECSSCEEECTT
T ss_pred CeEECCCcEECcCCEEecCceEEECCC
Confidence 45666666666666663 23455654
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-08 Score=86.84 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=66.6
Q ss_pred cCCCCCCcee--cCceeeceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCc
Q 018109 223 SRRNLPPSKI--DDSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRV 296 (360)
Q Consensus 223 ~~~~~~~~~~--~~~~i~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (360)
.+.|.+|... .. ++.||+++.|. ++.|. ..+||++|.|++++.|....+--+. ..-...+.- +.
T Consensus 58 ~~~I~~~~~~~~g~----~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~-----~~~~~~~~~-~~ 127 (182)
T 1ocx_A 58 EAYIEPTFRCDYGY----NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDP-----VARNSGAEL-GK 127 (182)
T ss_dssp SEEECSCEEESSST----TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSH-----HHHTTTCBE-EC
T ss_pred CEEEeCCEEEEeCC----CEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccCh-----hhcccCccc-cC
Confidence 3455565332 22 66788888887 66663 5789999999999999754321110 000000000 01
Q ss_pred ceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 297 PVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 297 ~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
++.||++|+|+ +|+|..+++||++++|+.++.+.+. |.+++++.|..+++
T Consensus 128 ~v~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV~~d--------ip~~~vv~G~Pa~~ 178 (182)
T 1ocx_A 128 PVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--------VPDNVVVGGNPARI 178 (182)
T ss_dssp CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--------BCSSEEEETTTTEE
T ss_pred CeEEeCCeEECCCCEECCCcEECCCCEECCCCEECCc--------CCCCcEEEccccEE
Confidence 27777777776 6777777777777777665544433 34555566666543
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.3e-09 Score=90.79 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=27.8
Q ss_pred eeEEecCeEECCCCEEec--eEEECCcccchhHHHHhhhhCCCcceEECCCCeEe
Q 018109 255 HSVVGIRSRINANVHLKD--TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 307 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~ 307 (360)
++.||+++.|++++.|.+ .+.+|++ |.|+++|.|.
T Consensus 78 ~v~IG~~~~I~~~~~i~~~~~v~IG~~------------------~~Ig~~~~I~ 114 (190)
T 3hjj_A 78 NIHVGKSFFANFNCVILDVCEVRIGDH------------------CMFAPGVHIY 114 (190)
T ss_dssp TEEECTTCEECTTCEEECSSCEEECTT------------------CEECTTCEEE
T ss_pred ceEECCceeeCCCeEEEeCCCeEECCc------------------eEEcCCcEEe
Confidence 678888888888888875 6677876 8888888883
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.9e-09 Score=94.69 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=83.4
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCH-HHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-MDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl-~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
+|++++++.+..+++ ++|++++||..++.++ +++++.+ . +++........+..++.+..+ +|++.
T Consensus 94 ~g~~~~i~~a~~~~~-------~~~lv~~~D~p~~~~~~~~l~~~~-----~-~~~~~~~~~~~~~~~~~v~~~-~g~v~ 159 (232)
T 2xme_A 94 KGNGYSLLVAKNHVE-------DRFILTMGDHVYSQQFIEKAVRGE-----G-VIADREPRFVDIGEATKIRVE-DGRVA 159 (232)
T ss_dssp GCHHHHHHTTGGGCC-------SSEEEEETTEEECHHHHHHHTTCC-----E-EEEESSCSSSCTTTSCEEEEE-TTEEE
T ss_pred CCcHHHHHHHHHHCC-------CCEEEEcCCcccCHHHHHHHHhCC-----C-cEEEccccccCCCcceEEEEc-CCEEE
Confidence 699999999998874 5799999999875553 4554321 1 222221111113456666665 78999
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEe
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF 184 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~ 184 (360)
.+.+++.. ..+.++|+|+|++++|..+ ++.... .+..++.+++..++..+.+
T Consensus 160 ~~~~~~~~-----------------------~~~~~~g~~~~~~~~~~~l-~~~~~~----g~~~l~~ll~~~~v~~~~~ 211 (232)
T 2xme_A 160 KIGKDLRE-----------------------FDCVDTGFFVLDDSIFEHA-EKLRDR----EEIPLSEIVKLARLPVTYV 211 (232)
T ss_dssp EEETTCSS-----------------------CSEEEEEEEEECTTHHHHH-GGGTTS----SCCCHHHHHHHHTCBEEEC
T ss_pred EeecCCCC-----------------------cceEEEEEEEECHHHHHHH-HHHHhc----ChhHHHHHHHcCCEEEEEE
Confidence 99887642 2467899999999999754 443211 1123445555556777777
Q ss_pred C-CceeecCCHHHHHHHHHH
Q 018109 185 N-DYWEDIGTIRSFFEANLA 203 (360)
Q Consensus 185 ~-g~w~digtp~~~~~a~~~ 203 (360)
+ ++|.|++||++|.++++.
T Consensus 212 ~~~~~~dI~tpeDl~~a~~~ 231 (232)
T 2xme_A 212 DGELWMDVDTKEDVRRANRA 231 (232)
T ss_dssp CSCCEEEEECC---------
T ss_pred CCCCEEeCCCHHHHHHHHhh
Confidence 5 789999999999887653
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-08 Score=88.22 Aligned_cols=69 Identities=26% Similarity=0.311 Sum_probs=46.6
Q ss_pred eeEEecCeEECCCCEEec--eEEECCcccchhHHHHhhhhCCCcceEECCCCeE-------------------eeeEecC
Q 018109 255 HSVVGIRSRINANVHLKD--TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI-------------------KECIIDK 313 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-------------------~~~~i~~ 313 (360)
++.||+++.|++++.|.+ .+.+|++ |.||++|.| ..++||+
T Consensus 76 ~~~IG~~~~i~~~~~i~~~~~i~IG~~------------------~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~ 137 (188)
T 3srt_A 76 NIHVGENFFANYDCIFLDVCKIEIGDN------------------VMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGD 137 (188)
T ss_dssp TEEECTTEEECTTEEEECSSCEEECSS------------------CEECTTCEEECEECCSSHHHHHTTEEEECCEEECS
T ss_pred CeEECCcccccCceEEecCCceEECCe------------------eEECCCcEEeeCCccCchhhccccceECCCcEECC
Confidence 678888888888888875 5677776 888888888 2455666
Q ss_pred CCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 314 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
+|.||.+++|.. .++||++++|++++++
T Consensus 138 ~v~IG~~~~I~~------gv~IG~~~vIgagsvV 165 (188)
T 3srt_A 138 NVWIGGGVIITP------GITIGDNVVIGAGSVV 165 (188)
T ss_dssp SCEECTTCEECT------TCEECSSEEECTTCEE
T ss_pred CcEEcCCCEECC------CcEECCCCEECCCCEE
Confidence 666666666544 3455566666655543
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.77 E-value=4.6e-09 Score=93.85 Aligned_cols=38 Identities=8% Similarity=0.078 Sum_probs=18.0
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCc
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 279 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~ 279 (360)
++.||++|.|. ..+..+.+++.|++++.|++.+.+|++
T Consensus 35 ~v~IG~~t~i~---~~~~~~~~~~vI~~~~~Ig~~v~IG~~ 72 (220)
T 4hur_A 35 NILVGEYSYYD---SKRGESFEDQVLYHYEVIGDKLIIGRF 72 (220)
T ss_dssp TEEECTTCEEE---CSSSCCGGGGEESCCTTTCCCEEECSS
T ss_pred CEEECCCeEEC---CcCCcccCCeEEeCCCEECCCeEECCC
Confidence 44555555542 013333445555555555555555544
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.76 E-value=6.8e-09 Score=91.28 Aligned_cols=69 Identities=26% Similarity=0.331 Sum_probs=43.1
Q ss_pred eeEEecCeEECCCCEEece--EEECCcccchhHHHHhhhhCCCcceEECCCCeEe-------------------eeEecC
Q 018109 255 HSVVGIRSRINANVHLKDT--MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------------------ECIIDK 313 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-------------------~~~i~~ 313 (360)
++.||+++.|++++.|.+. +.+|++ |.||++|.|. .++||+
T Consensus 74 ~~~IG~~~~I~~~~~i~~~~~v~IG~~------------------v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~ 135 (199)
T 3ftt_A 74 NVKLGKNVYVNTNCYFMDGGQITIGDN------------------VFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGS 135 (199)
T ss_dssp TEEECSSEEECTTEEEECSSCEEECSS------------------EEECTTCEEECEECCSSHHHHHTTEEEECCEEECS
T ss_pred CcEECCCeEECCCeEEecCCEEEECCC------------------CEECCCCEEecCCCcCccccccccceecCCeEEcC
Confidence 5778888888888888543 777776 8888888883 234555
Q ss_pred CCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 314 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
+|.||.+++|.. +++||+++.|++++++
T Consensus 136 ~v~IG~~~~I~~------gv~IG~~~vIgagsvV 163 (199)
T 3ftt_A 136 NTWFGGHVAVLP------GVTIGEGSVIGAGSVV 163 (199)
T ss_dssp SEEECTTCEECT------TCEECTTCEECTTCEE
T ss_pred CcEEcCCCEECC------CCEECCCCEECCCCEE
Confidence 555555555443 3455555555555443
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.74 E-value=8.4e-09 Score=96.62 Aligned_cols=81 Identities=19% Similarity=0.126 Sum_probs=47.6
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-----eeEecCC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----ECIIDKN 314 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-----~~~i~~~ 314 (360)
+.||+++.|.+. .+++||+++.||++|.|...+.+|++ +.+++++.+. +++||++
T Consensus 170 a~IG~~v~I~~g--~gvvIG~~~~IG~~v~I~~~vtIG~~------------------~~ig~~~~i~~~~~~~~~IGd~ 229 (313)
T 3q1x_A 170 ASIKGHFFIDHG--VGVVIGETAIIGEWCRIYQSVTLGAM------------------HFQEEGGVIKRGTKRHPTVGDY 229 (313)
T ss_dssp CEECSSCEESSC--TTCEECTTCEECSSCEECTTCEEECC------------------CCCCTTCCCCCCSSCSCEECSS
T ss_pred CEECCCEEECCC--CceEECCCcEECCCCEECCCcEEeCC------------------cEECCCceEcCCCccCCEECCC
Confidence 444555555311 04666677777777777666666654 5555555553 3477777
Q ss_pred CEECCCcEEecCCCcccccccCCceEEeCCeE
Q 018109 315 ARIGKNVIIANSEGIQEADRSAEGFYIRSGVT 346 (360)
Q Consensus 315 ~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 346 (360)
|.||++++|... ++||++++|++|++
T Consensus 230 v~IGaga~Ilgg------v~IG~~a~IGagsv 255 (313)
T 3q1x_A 230 VTIGTGAKVLGN------IIVGSHVRIGANCW 255 (313)
T ss_dssp CEECTTCEEESS------CEECSSEEECTTCE
T ss_pred CEECCCCEECCC------cEECCCCEECCCCE
Confidence 777777777554 44555555555544
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-08 Score=91.17 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=15.8
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEEC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLG 277 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~ 277 (360)
+.||+++.|.+. ..++||+++.||++|.|...+.++
T Consensus 171 a~IG~~v~I~hg--~gvvIG~~~~IGd~v~I~~gvtIg 206 (287)
T 3mc4_A 171 ARLGSGLFLDHA--TGLVVGETAVVEDNVSILHGVTLG 206 (287)
T ss_dssp CEECSSCEEESC--TTCEECTTCEECSSCEEETTCEEE
T ss_pred CEECCCeEEccC--CCeEECCCeEECCCCEEcCCCEEc
Confidence 344455555410 034444445555554444444444
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-08 Score=94.17 Aligned_cols=87 Identities=23% Similarity=0.214 Sum_probs=46.3
Q ss_pred ceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEece----EEECCcccchhHHHHhhhh
Q 018109 219 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLA 292 (360)
Q Consensus 219 ~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~ 292 (360)
.+++.+.|++++++... .++.||++|.|+ ++.|. +++||.++.+++++.+... +++|++
T Consensus 165 ~I~p~a~IG~~v~I~~g--~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~------------- 229 (313)
T 3q1x_A 165 DIHPGASIKGHFFIDHG--VGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDY------------- 229 (313)
T ss_dssp EECTTCEECSSCEESSC--TTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSS-------------
T ss_pred EECCCCEECCCEEECCC--CceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCC-------------
Confidence 34444455555544110 034455555554 33332 4455555555555544433 255554
Q ss_pred CCCcceEECCCCeEe-eeEecCCCEECCCcEEec
Q 018109 293 EGRVPVGIGENTKIK-ECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 293 ~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~ 325 (360)
|.||.+|.|. ++.||++|.||+++++..
T Consensus 230 -----v~IGaga~Ilggv~IG~~a~IGagsvV~~ 258 (313)
T 3q1x_A 230 -----VTIGTGAKVLGNIIVGSHVRIGANCWIDR 258 (313)
T ss_dssp -----CEECTTCEEESSCEECSSEEECTTCEECS
T ss_pred -----CEECCCCEECCCcEECCCCEECCCCEECC
Confidence 7777777665 577777777777777754
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.3e-08 Score=89.33 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=21.6
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCCCccc
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQE 331 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~ 331 (360)
+.||++|+|+ +|+|..+++||++++|+..+.+.+
T Consensus 120 v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~ 154 (220)
T 4hur_A 120 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTK 154 (220)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred eEECCCcEECCCCEEeCCCEECCCCEEcCCCEEcc
Confidence 6666666665 566666666666666666554443
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.3e-08 Score=98.48 Aligned_cols=99 Identities=19% Similarity=0.205 Sum_probs=69.8
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCC----
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKN---- 314 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~---- 314 (360)
++.|++++.|.++.|.+++||++|.|+. +.|.+ +++|++ |.||++|.|.++++..+
T Consensus 314 ~~~i~~~~~i~~~~I~~~~Ig~~~~I~~-~~i~~-~~Ig~~------------------~~Ig~~~~I~~~~~~~~~~~~ 373 (451)
T 1yp2_A 314 QPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH-SVVGLR------------------SCISEGAIIEDSLLMGADYYE 373 (451)
T ss_dssp CCCCCCCEEEEEEEEEEEEECTTCEEEE-EEEES-CEECTT------------------CEECTTCEEESCEECCCSSCC
T ss_pred CCccCCCeEEcceEEeCeEECCCCEEcc-eEEec-cEECCC------------------CEECCCCEEcCceEECCCCcc
Confidence 5566677766656666788888888876 77774 455665 99999999987666555
Q ss_pred ---------------CEECCCcEEecCCCcccccccCCceEEeCCe-----EEEcCCcEeCCCc
Q 018109 315 ---------------ARIGKNVIIANSEGIQEADRSAEGFYIRSGV-----TVILKNSVITDGF 358 (360)
Q Consensus 315 ---------------~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~ig~~~~i~~g~ 358 (360)
+.||+++.+.+ ..+++++.||+++.|..+. .+||+++.||+|+
T Consensus 374 ~~~~~~~~~~~g~~~~~Ig~~~~i~~-~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~ 436 (451)
T 1yp2_A 374 TDADRKLLAAKGSVPIGIGKNCHIKR-AIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI 436 (451)
T ss_dssp CHHHHHHHHTTTCCCSEECTTCEEES-EEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTE
T ss_pred cccccccccccCceeEEECCCCEEec-cEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCE
Confidence 99999999865 4556666777777765431 2556666666664
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.2e-08 Score=92.50 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=8.8
Q ss_pred eEEecCeEECCCCEEeceEEEC
Q 018109 256 SVVGIRSRINANVHLKDTMMLG 277 (360)
Q Consensus 256 ~~ig~~~~i~~~~~i~~~~~~~ 277 (360)
++||+++.||++|.|...+.+|
T Consensus 211 vvIG~~~~IG~~v~I~~gvtIg 232 (310)
T 3f1x_A 211 VVIGATSIIGNNVKLYQGVTLG 232 (310)
T ss_dssp CEECTTCEECSSCEEETTCEEE
T ss_pred eEECCceEEcCCCEECCCCEEC
Confidence 3344444444444444333333
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-08 Score=95.83 Aligned_cols=15 Identities=27% Similarity=0.016 Sum_probs=11.4
Q ss_pred EEEEeHHHHHHHHHh
Q 018109 143 VYLFKKEILLNLLRW 157 (360)
Q Consensus 143 Iyifs~~vl~~ll~~ 157 (360)
++-++++.+.++++.
T Consensus 82 ~~~~~~~~~~~~~~~ 96 (387)
T 2rij_A 82 VQTLKLEDIDFALSC 96 (387)
T ss_dssp EEECCHHHHHHHHHH
T ss_pred eEeCCHHHHHHHHHH
Confidence 777889988877654
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=8e-08 Score=84.68 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=15.6
Q ss_pred eeEEecCeEECCCCEEec--eEEECCc
Q 018109 255 HSVVGIRSRINANVHLKD--TMMLGAD 279 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~--~~~~~~~ 279 (360)
++.||+++.|++++.|.+ .+.+|++
T Consensus 75 ~i~IG~~~~I~~~~~i~~~~~i~IG~~ 101 (203)
T 1krr_A 75 NIHIGRNFYANFNLTIVDDYTVTIGDN 101 (203)
T ss_dssp TEEECSSCEECSCEEEECSSCEEECSS
T ss_pred CeEECCeeEECCccEEecccceEECCC
Confidence 566666666666666654 3566665
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.9e-08 Score=94.29 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=60.4
Q ss_pred eEECCCCEEc------ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecC
Q 018109 240 SIISHGSFIT------SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDK 313 (360)
Q Consensus 240 ~~i~~~~~i~------~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~ 313 (360)
+.+++++.++ ++.+.++.||++|.| +++.|.++ ++|++ |.||++|.|.+|+||+
T Consensus 303 ~~i~~~~~i~~~~~~~~~~i~~~~ig~~~~I-~~~~i~~~-~ig~~------------------~~I~~~~~i~~~~i~~ 362 (420)
T 3brk_X 303 AEITPPAKFVHDDEDRRGSAVSSVVSGDCII-SGAALNRS-LLFTG------------------VRANSYSRLENAVVLP 362 (420)
T ss_dssp CCCCCCCEEECBCSSCBCEEESCEECSSCEE-ESCEEESC-EECTT------------------CEECTTCEEEEEEECT
T ss_pred cccCCCcEEecccccCCcEecCCEECCCCEE-cCCEEeCc-EEcCC------------------CEECCCCEEcceEEcC
Confidence 3445555554 345568999999999 89999874 55665 9999999999999999
Q ss_pred CCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 314 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
+|.||+++.|.+ ++|++++.|++++++
T Consensus 363 ~~~i~~~~~i~~-------~~ig~~~~i~~~~~i 389 (420)
T 3brk_X 363 SVKIGRHAQLSN-------VVIDHGVVIPEGLIV 389 (420)
T ss_dssp TCEECTTCEEEE-------EEECTTCEECTTCEE
T ss_pred CCEECCCCEEec-------eEECCCCEECCCCEE
Confidence 999999999975 345555555555443
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.62 E-value=8.1e-07 Score=88.13 Aligned_cols=252 Identities=14% Similarity=0.116 Sum_probs=136.3
Q ss_pred ccccccHHHHHHH-----hHhh-cCCCCCCCCeEEEEcCceeee-cCHHHHHHHHHHcCCcEEEEEeecCCCCC-CcccE
Q 018109 23 RWFQGTADAVRQF-----HWLF-EDPRNKVIEDVLILSGDHLYR-MDYMDFVQNHRQSGADITISCLPMDDSRA-SDFGL 94 (360)
Q Consensus 23 ~~~lGTa~al~~a-----~~~i-~~~~~~~~~~fLVv~gD~i~~-~dl~~ll~~h~~~~a~~tll~~~~~~~~~-~~~g~ 94 (360)
..++|||+++... .+.+ ++ ..++++|++||++.. .|+. ++.+|.++++++++.+.+.++ + .+||+
T Consensus 200 ~~P~GtGga~~~L~~sg~l~~l~~~----g~~~v~V~ngDnL~~~~d~~-~L~~~~~~~a~~t~~v~~~~~--p~~~yG~ 272 (488)
T 2i5k_A 200 WYPPGHGDLFESLHVSGELDALIAQ----GREILFVSNGDNLGATVDLK-ILNHMIETGAEYIMELTDKTR--ADVKGGT 272 (488)
T ss_dssp EECCCGGGHHHHHHHHTHHHHHHHT----TCCEEEEECTTBSSCCCCHH-HHHHHHHSCCSEEEEEEECCG--GGSSSCE
T ss_pred eecCCCchhhhhhhhcCcHHHHHhc----CCCEEEEEeCCcCCCcccHH-HHHHHHhcCCcEEEEEEEecC--CCCceeE
Confidence 4578999999843 3444 21 247999999999886 4775 669999999999999888766 4 35998
Q ss_pred EEECCCCceEEEEe---cCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchh-----
Q 018109 95 MKINNEGRVLSFSE---KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFG----- 166 (360)
Q Consensus 95 v~~d~~g~V~~~~e---kp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~----- 166 (360)
+..+ +|+ ..+.| .|...... +. +. ..-.+.|+|+|+|+.+.|.+++++....+..+.
T Consensus 273 Iv~~-dG~-~~iVE~~e~~~e~~~~--------~~---~~--~~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i 337 (488)
T 2i5k_A 273 LISY-DGQ-VRLLEVAQVPKEHIDE--------FK---NI--RKFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTI 337 (488)
T ss_dssp EEEE-TTE-EEEECGGGSCTTSHHH--------HT---CT--TTCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECC
T ss_pred EEEE-CCc-EEEEEeccCCHHHHhh--------cc---cc--cccCEEEEEEEEEeHHHHHHHHhhccCCCcceecCccc
Confidence 8764 565 44444 33321100 00 00 012467999999999999988876321111110
Q ss_pred ------------hcccccccc-cCceEEEEeC-CceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCcee
Q 018109 167 ------------SEIIPASAN-EQFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI 232 (360)
Q Consensus 167 ------------~~~l~~~i~-~~~I~~~~~~-g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~ 232 (360)
|.++-++++ =.+..++.++ ..|.-+-+..+++.+..++..........++. . +.+.|-..+
T Consensus 338 ~~~~~~~~~~qlE~~~~d~~~~~~~~~~~~V~R~~F~PvKn~~~ll~~~~~~~~~~~g~~~~~~~-~----~e~~P~v~~ 412 (488)
T 2i5k_A 338 TRDGHEINVLQLETACGAAIRHFDGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRLEHGSLKLDPS-R----FGPNPLIKL 412 (488)
T ss_dssp CC-----CEECCBCCGGGGGGGSSSCEEEEECGGGCCBCCSHHHHHHHTSTTEEEETTEEEECTT-C----CSSCCEEEE
T ss_pred cCCCCCCceEEeeehhhhHHhhccCceEEEecccccccccCCccHHHHHHHHHHHhcCcEeecCC-c----CCCCCeEEE
Confidence 001111111 0123344432 35777777776655544322111100000111 0 111221111
Q ss_pred cC--ceeec--eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEee
Q 018109 233 DD--SKIVD--SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE 308 (360)
Q Consensus 233 ~~--~~i~~--~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~ 308 (360)
.+ .++.+ ..+.....|... .+-+|--++.++.++.+...+++-++ .| .+..|-+|+.++|
T Consensus 413 ~~~~~~~~~~~~rf~~~p~i~~~--~~l~v~Gdv~fg~~v~l~G~v~i~a~-------------~~-~~~~ip~g~~l~n 476 (488)
T 2i5k_A 413 GSHFKKVSGFNARIPHIPKIVEL--DHLTITGNVFLGKDVTLRGTVIIVCS-------------DG-HKIDIPNGSILEN 476 (488)
T ss_dssp CGGGSSHHHHHHHCSSCCBCTTE--EEEEEESSEEECTTCEEEEEEEEECC-------------TT-CCEEECTTCEEEE
T ss_pred CCcccchhhHHhhcCCCcccccc--ceEEEEeeeEEcCCcEEEEEEEEEcC-------------CC-CeEEeCCCCEEec
Confidence 11 01110 112111111111 14455667889999999888887653 11 2378889999988
Q ss_pred eEecCCCEE
Q 018109 309 CIIDKNARI 317 (360)
Q Consensus 309 ~~i~~~~~i 317 (360)
..|..+.+|
T Consensus 477 ~~~~~~~~~ 485 (488)
T 2i5k_A 477 VVVTGNLQI 485 (488)
T ss_dssp EEEEEEEEE
T ss_pred ceeeccccc
Confidence 888777766
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.7e-08 Score=85.63 Aligned_cols=69 Identities=23% Similarity=0.250 Sum_probs=49.2
Q ss_pred eeEEecCeEECCCCEEe--ceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-------------------eeEecC
Q 018109 255 HSVVGIRSRINANVHLK--DTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------------------ECIIDK 313 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-------------------~~~i~~ 313 (360)
+..||+++.|++++.|. ..+.+|++ |.|+++|.|. .++||+
T Consensus 74 ~v~IG~~~~i~~~~~i~~~~~i~IG~~------------------v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd 135 (185)
T 2p2o_A 74 NIHVGENFFMNFDGVILDVCEVRIGDH------------------CFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGH 135 (185)
T ss_dssp TEEECTTEEECSSEEEECSSCEEECTT------------------CEECTTCEEECEECCSSHHHHHTCCBEECCEEECS
T ss_pred CEEECCeeEEcCCeEEEeccceEECCC------------------cEEeCCCEEEcCCCcCChhhcccCccccCCeEEcC
Confidence 67888999999998886 56788876 8888888883 456666
Q ss_pred CCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 314 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
+|.||++++|.. +++||++++|++|+++
T Consensus 136 ~v~IG~~~~I~~------gv~IG~~~vIgagsvV 163 (185)
T 2p2o_A 136 NVWIGGRAVINP------GVTIGDNAVIASGAVV 163 (185)
T ss_dssp SCEECTTCEECT------TCEECTTCEECTTCEE
T ss_pred CeEECCCCEECC------CCEECCCCEECCCCEE
Confidence 666666666654 3455666666665543
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.6e-08 Score=90.85 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=47.7
Q ss_pred ceEECCCCEEcceEEeeeEE--ecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeE----------
Q 018109 239 DSIISHGSFITSSFIEHSVV--GIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKI---------- 306 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~i--g~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i---------- 306 (360)
++.|++++.|+. +++| |.++.|++++.|++.+.++.+ +.||.++..
T Consensus 190 gv~I~p~a~IG~----~v~I~hg~gvvIG~~~~IG~~v~I~~g------------------vtIg~~~~~~~~~g~~i~~ 247 (310)
T 3f1x_A 190 GIDIHPGAQIGH----HFTIDHGTGVVIGATSIIGNNVKLYQG------------------VTLGAKSFPLDNNGNPIKG 247 (310)
T ss_dssp SCEECTTCEECS----SCEEESCTTCEECTTCEECSSCEEETT------------------CEEECC-------------
T ss_pred CcEECCCCEECC----CcEECCCCCeEECCceEEcCCCEECCC------------------CEECCCccccccccccccC
Confidence 455666666663 3455 667777777777666666654 666665522
Q ss_pred --eeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 307 --KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 307 --~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
..++||++|.||++++|.. +++||+++.|++|+++
T Consensus 248 ~~~~~~IGd~V~IGaga~Il~------gv~IGd~a~IGagsvV 284 (310)
T 3f1x_A 248 IPRHPILEDDVIVYSNATILG------RVTIGKGATVGGNIWV 284 (310)
T ss_dssp -CCSCEECTTCEECTTCEEES------SCEECTTCEECSSCEE
T ss_pred CCCCCEECCCcEEcCCCEECC------CcEECCCCEECCCCEE
Confidence 1236777777777777664 3455555666555543
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.7e-07 Score=84.55 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=25.5
Q ss_pred CCeEE--EEcCceeeecCHHHHHHHHHHcC
Q 018109 47 IEDVL--ILSGDHLYRMDYMDFVQNHRQSG 74 (360)
Q Consensus 47 ~~~fL--Vv~gD~i~~~dl~~ll~~h~~~~ 74 (360)
.||+| ++++|++...+|.+++.+|.+++
T Consensus 19 ~EP~L~~~l~~~IL~~~~l~~aLa~~la~k 48 (267)
T 1ssq_A 19 NEPMLASFFHSTILKHQNLGGALSYLLANK 48 (267)
T ss_dssp HCHHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 38999 99999999999999999999865
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=98.57 E-value=7.6e-09 Score=92.96 Aligned_cols=134 Identities=13% Similarity=0.117 Sum_probs=87.9
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCC
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 101 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g 101 (360)
+.+||+++|+.+..+++ +.|+|++||. +...+++++++ | +.++++++...+.+++ ...|+.+ ..
T Consensus 68 ~~~g~~~~i~~a~~~~~-------~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~~~~-~~~~~~~----~~ 133 (232)
T 2dpw_A 68 DRGGLLENLEQALEHVE-------GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPKEAV-EARFPRT----KR 133 (232)
T ss_dssp CCSSHHHHHHHHHHTCC-------SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEHHHH-HHHCTTC----CC
T ss_pred CCCCHHHHHHHHHHHcC-------CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeeccch-hhhCCCc----ce
Confidence 35799999999998773 6899999999 55666899998 7 5667777777664331 1234422 23
Q ss_pred ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhh-----CCCC-cch----------
Q 018109 102 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR-----FPTA-NDF---------- 165 (360)
Q Consensus 102 ~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~-----~~~~-~~~---------- 165 (360)
++..+.||| ++++|+|+|++++|..+.+.. .+.. ..+
T Consensus 134 ~v~~~~ek~---------------------------~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~ 186 (232)
T 2dpw_A 134 TYARLREGT---------------------------FTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWDVLL 186 (232)
T ss_dssp CCEEETTEE---------------------------EEECSEEEEEHHHHTTTHHHHHHHHHTTTCHHHHHHHHCHHHHH
T ss_pred eEEEEecCc---------------------------eeeeeEEEEcHHHHHHHHHHHHHHHHhccCHHHHHHHHCHHHHH
Confidence 566665543 468999999999887553311 0100 000
Q ss_pred ----hhcccccc----cc--cCceEEEEe--CCceeecCCHHHHH
Q 018109 166 ----GSEIIPAS----AN--EQFLKAYLF--NDYWEDIGTIRSFF 198 (360)
Q Consensus 166 ----~~~~l~~~----i~--~~~I~~~~~--~g~w~digtp~~~~ 198 (360)
.+..++++ ++ +.++..+.. ++.|.|++||++|.
T Consensus 187 ~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 187 KLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp HHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred HHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 11223333 22 468888887 46799999999984
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.5e-08 Score=84.29 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=47.7
Q ss_pred eeEEecCeEECCCCEEe--ceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-------------------eeEecC
Q 018109 255 HSVVGIRSRINANVHLK--DTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------------------ECIIDK 313 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-------------------~~~i~~ 313 (360)
+..||+++.|++++.|. ..+.+|++ |.|+++|.|. +++||+
T Consensus 72 ~v~IG~~~~I~~~~~i~~~~~i~IG~~------------------v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~ 133 (182)
T 1ocx_A 72 NIFLGNNFFANFDCVMLDVCPIRIGDN------------------CMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGN 133 (182)
T ss_dssp TEEECSSEEECSSEEEECSSCEEECTT------------------CEECTTCEEECEECCSSHHHHTTTCBEECCEEECT
T ss_pred CEEECCCcEEeCCeEEEeccceEEcCC------------------cEEeCCcEEEeCCCccChhhcccCccccCCeEEeC
Confidence 67899999999999886 46777876 8888888883 355555
Q ss_pred CCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 314 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
+|.||++++|.. +++||++++|++++++
T Consensus 134 ~v~Ig~~a~I~~------gv~IG~~~vIgagsvV 161 (182)
T 1ocx_A 134 NVWIGGRAVINP------GVTIGDNVVVASGAVV 161 (182)
T ss_dssp TCEECTTCEECT------TCEECTTCEECTTCEE
T ss_pred CeEECCCCEECC------CcEECCCCEECCCCEE
Confidence 555555555544 4566666666666544
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.56 E-value=8.7e-08 Score=88.50 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=49.1
Q ss_pred cCCCCCCceecCceeeceEEC--CCCEEcceEEeeeEEecCeEECCCCEEece--------EEECCcccchhHHHHhhhh
Q 018109 223 SRRNLPPSKIDDSKIVDSIIS--HGSFITSSFIEHSVVGIRSRINANVHLKDT--------MMLGADFYETDAEVASLLA 292 (360)
Q Consensus 223 ~~~~~~~~~~~~~~i~~~~i~--~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~--------~~~~~~~~~~~~~~~~~~~ 292 (360)
.+.|++.+.|.. ++.|+ .++.|++ +++||++|.|++++.|+.. +.+|++
T Consensus 164 gi~I~p~a~IG~----~v~I~hg~gvvIG~----~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~------------- 222 (287)
T 3mc4_A 164 QTDIHPAARLGS----GLFLDHATGLVVGE----TAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQG------------- 222 (287)
T ss_dssp CCEECTTCEECS----SCEEESCTTCEECT----TCEECSSCEEETTCEEEC-----CCCSCEECTT-------------
T ss_pred CeEECCCCEECC----CeEEccCCCeEECC----CeEECCCCEEcCCCEEcCCcccCCCcCCEECCC-------------
Confidence 344555555532 44554 4566664 6888888888888888875 455554
Q ss_pred CCCcceEECCCCeEe-eeEecCCCEECCCcEEec
Q 018109 293 EGRVPVGIGENTKIK-ECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 293 ~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~ 325 (360)
|.||.++.|. ++.||++|.||+++++..
T Consensus 223 -----v~IGaga~Il~gv~IG~~a~IGagsvV~k 251 (287)
T 3mc4_A 223 -----VLIGAGAKILGNIQVGQCSKIAAGSVVLK 251 (287)
T ss_dssp -----CEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred -----CEECCCCEECCCcEECCCCEECCCCEEcc
Confidence 6666666665 566777777776666654
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-07 Score=86.59 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=25.6
Q ss_pred CCeEE--EEcCceeeecCHHHHHHHHHHcC
Q 018109 47 IEDVL--ILSGDHLYRMDYMDFVQNHRQSG 74 (360)
Q Consensus 47 ~~~fL--Vv~gD~i~~~dl~~ll~~h~~~~ 74 (360)
.|++| ++++|++...+|.++|.+|.+++
T Consensus 39 ~EP~L~~~l~~~IL~~~~l~~aLa~~La~k 68 (289)
T 1t3d_A 39 CEPMLASFYHATLLKHENLGSALSYMLANK 68 (289)
T ss_dssp HCGGGHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 38999 99999999999999999999865
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.45 E-value=3.1e-07 Score=81.33 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=21.2
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCCCcc
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQ 330 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~ 330 (360)
+.||++|+|+ +|.|..+++||++|+|+..+.+.
T Consensus 112 v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~ 145 (212)
T 3eev_A 112 TIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVT 145 (212)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 6666666665 56666666666666666655544
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=3e-07 Score=84.24 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=11.9
Q ss_pred CCceeecCCHHHHHHHHHHhhcCC
Q 018109 185 NDYWEDIGTIRSFFEANLALTAHP 208 (360)
Q Consensus 185 ~g~w~digtp~~~~~a~~~~l~~~ 208 (360)
+|+| ....|..++..+....
T Consensus 102 ~g~~----al~~yR~ah~l~~~~~ 121 (267)
T 1ssq_A 102 KGFH----AIQSYRITHYLWNQNR 121 (267)
T ss_dssp HHHH----HHHHHHHHHHHHTTTC
T ss_pred chHH----HHHHHHHHHHHHHhHH
Confidence 5666 4556766766655443
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.36 E-value=5.7e-07 Score=83.18 Aligned_cols=20 Identities=0% Similarity=0.117 Sum_probs=12.6
Q ss_pred CCceeecCCHHHHHHHHHHhhcCC
Q 018109 185 NDYWEDIGTIRSFFEANLALTAHP 208 (360)
Q Consensus 185 ~g~w~digtp~~~~~a~~~~l~~~ 208 (360)
+|||. ...|..++..++...
T Consensus 122 ~G~~a----l~~yR~ah~l~~~~r 141 (289)
T 1t3d_A 122 KGFHA----LQAYRIGHWLWNQGR 141 (289)
T ss_dssp HHHHH----HHHHHHHHHHHHHTC
T ss_pred ccHHH----HHHHHHHHHHHHcCh
Confidence 57776 566777766665543
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=78.28 Aligned_cols=141 Identities=13% Similarity=0.076 Sum_probs=93.5
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-e-eecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i-~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
.|++++++.+...+.. ..+.+++++||. + ...++.++++.|++.+++++++..+..+. | ++...++++|++
T Consensus 80 ~g~~~sv~~~l~~~~~----~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~-p--~~~~~~~~~g~~ 152 (228)
T 1ezi_A 80 ASSISGVIHALETIGS----NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHH-P--LKTLLQINNGEY 152 (228)
T ss_dssp CHHHHHHHHHHHHHTC----CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSC-T--TSCEEECC--CE
T ss_pred CChHHHHHHHHHHhCC----CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCCC-c--ceeeEEcCCCcE
Confidence 5789999999988842 137899999998 3 45568999998887777778877776651 2 333334677888
Q ss_pred EEEEecCC-ccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEE
Q 018109 104 LSFSEKPK-GKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAY 182 (360)
Q Consensus 104 ~~~~ekp~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~ 182 (360)
..+.+... .... +.. ......++|+|+++++.|...+ . + .+.++..+
T Consensus 153 ~~~~~~~~~~~~~-------------~~~--~~~~~~~~giy~~~~~~l~~~~--------~----~-----~g~~v~~~ 200 (228)
T 1ezi_A 153 APMRHLSDLEQPR-------------QQL--PQAFRPNGAIYINDTASLIANN--------C----F-----FIAPTKLY 200 (228)
T ss_dssp EESSCHHHHTCCG-------------GGS--CCEEEEEEEEEEEEHHHHHHHT--------S----S-----CCSSCEEE
T ss_pred eeccccccccCCc-------------ccC--chhheeeeEEEEEeHHHHhhCC--------c----c-----cCCceEEE
Confidence 88865210 0000 000 0123457899999998775421 0 1 15577788
Q ss_pred EeC-CceeecCCHHHHHHHHHHhh
Q 018109 183 LFN-DYWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 183 ~~~-g~w~digtp~~~~~a~~~~l 205 (360)
..+ .+|.||+||++|..++..+.
T Consensus 201 ~~~~~~~~dIdtpeDl~~a~~~l~ 224 (228)
T 1ezi_A 201 IMSHQDSIDIDTELDLQQAENILN 224 (228)
T ss_dssp ECCTGGGCCCCSHHHHHHHHHHHC
T ss_pred EeCcccccCCCCHHHHHHHHHHHH
Confidence 875 58999999999999877654
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-06 Score=77.74 Aligned_cols=142 Identities=8% Similarity=-0.040 Sum_probs=89.5
Q ss_pred cccHHHHHHHhHhhcCCCCC--CCCeEEEEcCce-e-eecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCC
Q 018109 26 QGTADAVRQFHWLFEDPRNK--VIEDVLILSGDH-L-YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 101 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~--~~~~fLVv~gD~-i-~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g 101 (360)
.|++++++.+..++.+. .. ..+.+++++||. + ...+++++++.|++.++ ++++.++.+ + +..+++|
T Consensus 84 ~~~~~~i~~~l~~~~~~-~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~~~~~~--~-----~~~~~~g 153 (236)
T 2vsh_A 84 ADRNTSIKNIIEAIDAY-RPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDTVVEAVD--T-----IVESTNG 153 (236)
T ss_dssp SSHHHHHHHHHHHHHHH-SCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEEEEECCS--C-----EEECSSS
T ss_pred CchHHHHHHHHHHHHhh-ccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEEEEeccc--c-----EEEeCCC
Confidence 36788999998887310 00 036789999999 4 45578999999988765 344455544 2 2223567
Q ss_pred -ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchh--hcccccccc-cC
Q 018109 102 -RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFG--SEIIPASAN-EQ 177 (360)
Q Consensus 102 -~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~--~~~l~~~i~-~~ 177 (360)
++..+.+++.. +.....|+|+++.|.++++.... ..+. .+.+..+.+ +.
T Consensus 154 ~~~~~~~~~~~~-------------------------~~~~~p~~f~~~~l~~~~~~~~~--~g~~~~~~~~~~l~~~~~ 206 (236)
T 2vsh_A 154 QFITDIPNRAHL-------------------------YQGQTPQTFRCKDFMDLYGSLSD--EEKEILTDACKIFVIKGK 206 (236)
T ss_dssp SBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTCCH--HHHHHCCSHHHHHHHTTC
T ss_pred CeeeeecChHHh-------------------------eeecCCcEecHHHHHHHHHHHHh--cCCCcCCCHHHHHHHcCC
Confidence 77777655321 11234889999988766553210 0010 011111122 46
Q ss_pred ceEEEEeCCceeecCCHHHHHHHHHHh
Q 018109 178 FLKAYLFNDYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 178 ~I~~~~~~g~w~digtp~~~~~a~~~~ 204 (360)
++..++.+++|.||+||++|..++..+
T Consensus 207 ~v~~~~~~~~~~dIdtpeDl~~a~~~~ 233 (236)
T 2vsh_A 207 DVALAKGEYSNLKITTVTDLKIAKSMI 233 (236)
T ss_dssp CEEEEECCTTCCCCCSHHHHHHHHHHT
T ss_pred CEEEEECCccccCcCCHHHHHHHHHHh
Confidence 788888888999999999999987654
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=3e-06 Score=74.82 Aligned_cols=141 Identities=15% Similarity=0.024 Sum_probs=91.4
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~-~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
.+++++++.+...++. .+.++++.||. +.+ .++.++++.|. .+.++++++.++.+ +..| .|++|++
T Consensus 77 ~~~~~~i~~al~~~~~-----~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~~~~d--~~~~----~~~~g~~ 144 (223)
T 2xwl_A 77 VDRTESVALALEAAGD-----AEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGLAPAD--TIKA----VDANGAV 144 (223)
T ss_dssp SSHHHHHHHHHTTCTT-----CSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEECCSS--CEEE----ECTTSBE
T ss_pred CCHHHHHHHHHHhcCC-----CCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEEeccc--ceEE----EcCCCcE
Confidence 4678999999887721 36889999998 444 46899999883 34456666666554 3232 2667888
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccc-cCceEEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASAN-EQFLKAY 182 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~-~~~I~~~ 182 (360)
..+.|++.. +.....|+|+++.+..+++... . .+..+....+.. +.++..+
T Consensus 145 ~~~~e~~~l-------------------------~~~~~p~~f~~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~v~~~ 196 (223)
T 2xwl_A 145 LGTPERAGL-------------------------RAVQTPQGFHADVLRRAYARAT-A--GGVTDDASLVEQLGTPVQIV 196 (223)
T ss_dssp EECCCGGGE-------------------------EEECSCEEEEHHHHHHHHTTCC-S--CCCCCHHHHHHTTTCCCEEE
T ss_pred EeecChHHh-------------------------eeeeCCcccCHHHHHHHHHHhh-C--CCCccHHHHHHHcCCCEEEE
Confidence 887765421 1123468899988876654321 0 001111111111 4678888
Q ss_pred EeCCceeecCCHHHHHHHHHHhhc
Q 018109 183 LFNDYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 183 ~~~g~w~digtp~~~~~a~~~~l~ 206 (360)
+.+++|+||+||++|.+++..+..
T Consensus 197 ~~~~~~~dIdtpeDl~~a~~~l~~ 220 (223)
T 2xwl_A 197 DGDPLAFKITTPLDLVLAEAVLAH 220 (223)
T ss_dssp ECCGGGCCCCSHHHHHHHHHHHHH
T ss_pred ECCcccccccCHHHHHHHHHHHhh
Confidence 888899999999999999876543
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.29 E-value=3e-07 Score=81.94 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=11.9
Q ss_pred eeEEecCeEECCCCEEe
Q 018109 255 HSVVGIRSRINANVHLK 271 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~ 271 (360)
+++||++|.|++++.|.
T Consensus 65 ~v~IG~~~~I~~gv~I~ 81 (219)
T 4e8l_A 65 KLIIGRFCSIGPGTTFI 81 (219)
T ss_dssp CEEECSSCEECTTCEEE
T ss_pred CEEECCCCEEcCCCEEE
Confidence 46777777777777763
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.29 E-value=6e-07 Score=79.49 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=20.4
Q ss_pred eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE
Q 018109 308 ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT 346 (360)
Q Consensus 308 ~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 346 (360)
+++||++|.||.+++|.... .||+++.|+++++
T Consensus 111 ~v~IG~~v~IG~~a~I~~gv------~IG~~~iIgagsv 143 (212)
T 3eev_A 111 DTIIGHDVWIGTEAMIMPGV------KIGHGAIIASRSV 143 (212)
T ss_dssp CEEECSSCEECTTCEECTTC------EECTTCEECTTCE
T ss_pred CeEECCCCEECCCCEEcCCC------EECCCCEECCCCE
Confidence 57777777777777776643 4444444444443
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.1e-06 Score=76.48 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=14.2
Q ss_pred eEEecCeEECCCCEEeceEEE
Q 018109 256 SVVGIRSRINANVHLKDTMML 276 (360)
Q Consensus 256 ~~ig~~~~i~~~~~i~~~~~~ 276 (360)
+++++.+.||++|.|...+.+
T Consensus 60 ~~i~~~v~IG~~~~I~~gv~I 80 (219)
T 4e8l_A 60 EVIGDKLIIGRFCSIGPGTTF 80 (219)
T ss_dssp TTTCCCEEECSSCEECTTCEE
T ss_pred ceeCCCEEECCCCEEcCCCEE
Confidence 345667777777777776665
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=5.7e-07 Score=79.57 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=12.1
Q ss_pred eeEEecCeEECCCCEE
Q 018109 255 HSVVGIRSRINANVHL 270 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i 270 (360)
.++||++|.|++++.|
T Consensus 60 ~v~IG~~~~Ig~gv~I 75 (209)
T 1mr7_A 60 KLKIGKFCSIGPGVTI 75 (209)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred CEEECCCCEEcCCCEE
Confidence 4677888888888776
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.6e-06 Score=74.37 Aligned_cols=18 Identities=6% Similarity=0.064 Sum_probs=10.1
Q ss_pred EecCeEECCCCEEeceEE
Q 018109 258 VGIRSRINANVHLKDTMM 275 (360)
Q Consensus 258 ig~~~~i~~~~~i~~~~~ 275 (360)
+++.+.||++|.|+..+.
T Consensus 57 i~~~v~IG~~~~Ig~gv~ 74 (209)
T 1mr7_A 57 LNDKLKIGKFCSIGPGVT 74 (209)
T ss_dssp GCCCEEECSSCEECTTCE
T ss_pred cCCCEEECCCCEEcCCCE
Confidence 445556666666665543
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=98.08 E-value=7.7e-06 Score=72.92 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=81.4
Q ss_pred HHHHHHHhHhhcCCCCCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEE
Q 018109 29 ADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSF 106 (360)
Q Consensus 29 a~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~-~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~ 106 (360)
.++++.+...+.+ .+.|++++||. +. ..++.++++.|++.+++.++.+.+..+ |..+++ .| + +..|
T Consensus 82 ~~~v~~al~~~~~-----~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~~~--p~~~~v--~~--~-~~~~ 149 (229)
T 1qwj_A 82 LDAIVEFLNYHNE-----VDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQ--FRWSEI--QK--G-VREV 149 (229)
T ss_dssp HHHHHHHHTTCTT-----CSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECC--CEECCC--CS--S-TTCC
T ss_pred HHHHHHHHHhcCC-----CCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeeccC--hhHhhc--cc--c-cccc
Confidence 4788888877732 47899999998 44 456899999999888776655554443 333432 22 2 2112
Q ss_pred EecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEE-EeC
Q 018109 107 SEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAY-LFN 185 (360)
Q Consensus 107 ~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~-~~~ 185 (360)
.+++....... .. .++. ...++.++|+|+|+++.| +. .+..+..+ .+ ..+
T Consensus 150 ~~~~~~~~~~~--~~------~~~~--~~~~~~n~giY~~~~~~l---~~---------------~~~~g~~~-~~~~~~ 200 (229)
T 1qwj_A 150 TEPLNLNPAKR--PR------RQDW--DGELYENGSFYFAKRHLI---EM---------------GYLQGGKM-AYYEMR 200 (229)
T ss_dssp CCBSSSBTTBC--CC------TTTS--CCEEEEEEEEEEEEHHHH---HT---------------TCSSCSSE-EEEECC
T ss_pred ccccccccccc--cC------CCCC--CceEEEeeEEEEEEHHHh---cc---------------ccccCCeE-EEEECC
Confidence 22110000000 00 0000 012467999999999987 11 11223444 44 554
Q ss_pred -CceeecCCHHHHHHHHHHhhc
Q 018109 186 -DYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 186 -g~w~digtp~~~~~a~~~~l~ 206 (360)
++|.||+||++|..++..+..
T Consensus 201 ~~~~~dIdt~~Dl~~a~~~~~~ 222 (229)
T 1qwj_A 201 AEHSVDIDVDIDWPIAEQRVLR 222 (229)
T ss_dssp GGGCCCHHHHCSHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHH
Confidence 789999999999999877654
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-05 Score=70.50 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=13.6
Q ss_pred eeeEEecCeEECCCCEE
Q 018109 254 EHSVVGIRSRINANVHL 270 (360)
Q Consensus 254 ~~~~ig~~~~i~~~~~i 270 (360)
....||++|.|++++.|
T Consensus 55 ~~i~IG~~~~Ig~~v~i 71 (212)
T 1xat_A 55 DKLVIGSFCSIGSGAAF 71 (212)
T ss_dssp CCEEECSSCEECTTCEE
T ss_pred cCEEEcCCCEECCCCEE
Confidence 36788888888888876
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=97.93 E-value=5.2e-05 Score=68.32 Aligned_cols=146 Identities=10% Similarity=0.011 Sum_probs=96.5
Q ss_pred cccHHHHHHHhHhhcCCCC-CCCCeEEEEcCce--eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCc
Q 018109 26 QGTADAVRQFHWLFEDPRN-KVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 102 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~-~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 102 (360)
.+..++++.+..++.+... ...+.+|++.||. +....+.++++.|++.++. +...++.+ .++..++++.
T Consensus 83 ~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~--i~~~~~~d------~i~~~~~~~~ 154 (246)
T 3f1c_A 83 EDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAV--DTVIEALD------TIVESSNHEV 154 (246)
T ss_dssp SSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEE--EEEEECSS------CEEECSSSSB
T ss_pred CchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCE--EEEEeccc------eEEEecCCCe
Confidence 4678899999988852000 0137899999998 4555689999999987754 33444443 2344444556
Q ss_pred eEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccccc-----ccC
Q 018109 103 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASA-----NEQ 177 (360)
Q Consensus 103 V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i-----~~~ 177 (360)
+..+.+++.. +..-..++|+.+.|...++... .+ .+.++++.+ .+.
T Consensus 155 v~~~~~r~~l-------------------------~~~qtpq~f~~~~L~~a~~~~~---~~-~~~~~TD~~~~~~~~g~ 205 (246)
T 3f1c_A 155 ITDIPVRDHM-------------------------YQGQTPQSFNMKKVFNHYQNLT---PE-KKQILTDACKICLLAGD 205 (246)
T ss_dssp CCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTSC---HH-HHHHCCCHHHHHHHTTC
T ss_pred EEEecChHHh-------------------------hhhcCCceeEHHHHHHHHHHHH---Hc-CCCccCcHHHHHHHcCC
Confidence 6665555421 1222456999888877765431 11 223445433 267
Q ss_pred ceEEEEeCCceeecCCHHHHHHHHHHhhcCC
Q 018109 178 FLKAYLFNDYWEDIGTIRSFFEANLALTAHP 208 (360)
Q Consensus 178 ~I~~~~~~g~w~digtp~~~~~a~~~~l~~~ 208 (360)
++..++.+.+|++|+||++|..++..+..+.
T Consensus 206 ~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~ 236 (246)
T 3f1c_A 206 DVKLVKGEIFNIKITTPYDLKVANAIIQERI 236 (246)
T ss_dssp CCEEEECCTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCccCcCCHHHHHHHHHHHhccc
Confidence 8999999999999999999999998776554
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00016 Score=64.05 Aligned_cols=164 Identities=9% Similarity=0.015 Sum_probs=94.9
Q ss_pred CcEEEeeCcccCCCCCC-------------ccccccHHHHHHHhHhhcCCCC-CCCCeEEEEcCce-eee-cCHHHHHHH
Q 018109 6 GNSQVLAATQTPGEAGK-------------RWFQGTADAVRQFHWLFEDPRN-KVIEDVLILSGDH-LYR-MDYMDFVQN 69 (360)
Q Consensus 6 g~~~i~~~~~~~~~~~~-------------~~~lGTa~al~~a~~~i~~~~~-~~~~~fLVv~gD~-i~~-~dl~~ll~~ 69 (360)
++.+++++.++..+... +...|++++++.+...+.+... ...+.+++++||. +.+ ..+.++++.
T Consensus 49 ~~~~ivvv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~ 128 (231)
T 1vgw_A 49 AVDLTVVVVSPEDTFADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQ 128 (231)
T ss_dssp TCCEEEEECCTTCSTHHHHHHHCTTSEEECCCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHH
T ss_pred CCCeEEEEECccHHHHHHHHhcCCCceEEEcCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHH
Confidence 47788888776443211 1135899999999888731000 0137899999997 444 448999998
Q ss_pred HHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH
Q 018109 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 149 (360)
Q Consensus 70 h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~ 149 (360)
|++.+.. .+++.+..+ ...+ . ++|++....++ . ..+.....|+|+++
T Consensus 129 ~~~~~~~-~~~~~~~~~--~~~~----~-~~g~i~~~~~~---~----------------------~~~~~~~p~~f~~~ 175 (231)
T 1vgw_A 129 AGNAAEG-GILAVPVAD--TLKR----A-ESGQISATVDR---S----------------------GLWQAQTPQLFQAG 175 (231)
T ss_dssp HTTCTTC-EEEEEECCS--CEEE----E-SSSBEEEEECC---T----------------------TEEEEEEEEEEEHH
T ss_pred HhhcCCe-EEEEeeccc--ceEE----e-CCCceEecCCh---H----------------------HheeeeCCcEecHH
Confidence 8765522 344444443 2111 2 34555433221 1 11222348999999
Q ss_pred HHHHHHHhhCCCCcchhhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHh
Q 018109 150 ILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 150 vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~ 204 (360)
.|..+++............++.. .+.++..++.++.|+||+||++|..++..+
T Consensus 176 ~l~~~~~~~~~~g~~~~~~~~~~--~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 228 (231)
T 1vgw_A 176 LLHRALAAENLGGITDEASAVEK--LGVRPLLIQGDARNLKLTQPQDAYIVRLLL 228 (231)
T ss_dssp HHHHHHHC----CCCSHHHHHHT--TTCCCEEEECCTTCCCCCSHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcCCCcHHHHHHH--cCCCEEEEECCccccCcCCHHHHHHHHHHH
Confidence 88776543211100001112221 146788888778999999999999987643
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.8e-05 Score=78.78 Aligned_cols=116 Identities=15% Similarity=0.144 Sum_probs=80.7
Q ss_pred cccccHHHHHHHhH------hhcCCCCCCCCeEEEEcCcee-eecCHHHHHHHHHHcCCcEEEEEee-cCCCCCCcccEE
Q 018109 24 WFQGTADAVRQFHW------LFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISCLP-MDDSRASDFGLM 95 (360)
Q Consensus 24 ~~lGTa~al~~a~~------~i~~~~~~~~~~fLVv~gD~i-~~~dl~~ll~~h~~~~a~~tll~~~-~~~~~~~~~g~v 95 (360)
.++|||+.+..+.. +++. ..+.|+|+++|++ +..+...++.+|.++++++++.+.+ ... ..++|++
T Consensus 219 ~P~GtGG~~~~L~~sg~L~~l~~~----g~e~~~V~n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~--~e~~Gvl 292 (505)
T 1jv1_A 219 APDGNGGLYRALAAQNIVEDMEQR----GIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNP--TEPVGVV 292 (505)
T ss_dssp EECCGGGHHHHHHHTTHHHHHHHT----TCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCST--TCSCCEE
T ss_pred CCCCchHHHHHHHHcCcHHHHHhc----CCCEEEEEECCccccccchHHHHHHHHHcCCCEEEEEEEccCC--ccCcceE
Confidence 47899999987753 2221 1379999999995 8888889999999999999998886 444 5689998
Q ss_pred EECCCCc--eEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHh
Q 018109 96 KINNEGR--VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 157 (360)
Q Consensus 96 ~~d~~g~--V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~ 157 (360)
..+ +|+ ++++.|+|...... .+ ++- ....++.|+|+|+|+.++|.++.++
T Consensus 293 ~~~-dg~~~vvEy~E~p~~~~~~---~~-------~~g-~~~~~~~N~~~~~f~l~~L~~i~~~ 344 (505)
T 1jv1_A 293 CRV-DGVYQVVEYSEISLATAQK---RS-------SDG-RLLFNAGNIANHFFTVPFLRDVVNV 344 (505)
T ss_dssp EEE-TTEEEEECGGGSCHHHHHC---BC-------TTS-SBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred EEE-CCeEEEEEEeeCCHHHhhh---cc-------ccc-ccccceeeEEEEEecHHHHHHHHHh
Confidence 764 455 45555555422100 00 000 0123688999999999999987654
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.1e-05 Score=71.30 Aligned_cols=38 Identities=5% Similarity=0.014 Sum_probs=24.7
Q ss_pred ceEECCCCEEcc----eEEeeeEE--------ecCeEECCCCEEeceEEE
Q 018109 239 DSIISHGSFITS----SFIEHSVV--------GIRSRINANVHLKDTMML 276 (360)
Q Consensus 239 ~~~i~~~~~i~~----~~i~~~~i--------g~~~~i~~~~~i~~~~~~ 276 (360)
+..||+++.|.+ +.+.++++ ...+.||.+|.|+..+.+
T Consensus 22 ~I~IG~~~~I~~~~~~~~~~~~v~~~~~~~~~~~~i~IG~~~~Ig~~v~i 71 (212)
T 1xat_A 22 NIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAF 71 (212)
T ss_dssp TEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEE
T ss_pred CEEEcCCeEECCcccCccccceeEeeccccCcccCEEEcCCCEECCCCEE
Confidence 556677776653 22223333 357899999999987765
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00015 Score=64.17 Aligned_cols=162 Identities=11% Similarity=0.046 Sum_probs=94.7
Q ss_pred CcEEEeeCcccCCC-----CCCcc-------c--cccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-ee-ecCHHHHHHH
Q 018109 6 GNSQVLAATQTPGE-----AGKRW-------F--QGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQN 69 (360)
Q Consensus 6 g~~~i~~~~~~~~~-----~~~~~-------~--lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~-~~dl~~ll~~ 69 (360)
|+++++++.++..+ ....| . .|+.++++.+..+++. ..+.++++.||. +. ..++.++++.
T Consensus 47 ~~~~ivvv~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~sv~~al~~~~~----~~~~vl~~d~d~P~~~~~~i~~l~~~ 122 (228)
T 2yc3_A 47 EVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGKERQDSVYSGLQEIDV----NSELVCIHDSARPLVNTEDVEKVLKD 122 (228)
T ss_dssp TEEEEEEECCGGGHHHHHTTTTTSSSEEEEECCCSSHHHHHHHHHTTSCT----TCSEEEEEETTCTTCCHHHHHHHHHH
T ss_pred CCCeEEEEEChHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHhhcc----CCCEEEEecCCCccCCHHHHHHHHHH
Confidence 67888888776431 11111 1 5888999999988753 136788999996 44 4568999999
Q ss_pred HHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH
Q 018109 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 149 (360)
Q Consensus 70 h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~ 149 (360)
|++.++ +++..+..+. +..+++++.+.++.+++. ..... ..|+|+++
T Consensus 123 ~~~~~~--~i~~~~~~~~------~~~~~~~~~v~~~~~~~~------------------------~~~~~-~~~~f~~~ 169 (228)
T 2yc3_A 123 GSAVGA--AVLGVPAKAT------IKEVNSDSLVVKTLDRKT------------------------LWEMQ-TPQVIKPE 169 (228)
T ss_dssp HHHHSE--EEEEEECCSC------CCCBCTTSCBCCCCSCCC------------------------CEEEE-EEEEECHH
T ss_pred HHhcCc--eEEEEeccce------EEEEcCCCceEEecCccc------------------------eEEEe-CCcEEEHH
Confidence 987664 4444544331 111244455554322111 11233 38999988
Q ss_pred HHHHHHHhhCCCCcchhhccccccc-ccCceEEEEeCCceeecCCHHHHHHHHHHhh
Q 018109 150 ILLNLLRWRFPTANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 150 vl~~ll~~~~~~~~~~~~~~l~~~i-~~~~I~~~~~~g~w~digtp~~~~~a~~~~l 205 (360)
.|...++........+ .+.+..+. .+.++..++-+..|+||+||++|..++..+.
T Consensus 170 ~l~~~~~~~~~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~ 225 (228)
T 2yc3_A 170 LLKKGFELVKSEGLEV-TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILS 225 (228)
T ss_dssp HHHHHHHHHHHHTCCC-CSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCc-ccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHh
Confidence 7765554311000000 11111112 2567765565668999999999999977654
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00021 Score=63.86 Aligned_cols=160 Identities=11% Similarity=0.013 Sum_probs=93.9
Q ss_pred CCcEEEeeCccc-CCCC---CCcc---ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeec-CHHHHHHHHHHcCC
Q 018109 5 TGNSQVLAATQT-PGEA---GKRW---FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGA 75 (360)
Q Consensus 5 ~g~~~i~~~~~~-~~~~---~~~~---~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~-dl~~ll~~h~~~~a 75 (360)
.++.+++++.++ ..+. ...+ ..|+.++++.+...++ .+.+++++||. +.+. .+..+++.+++.++
T Consensus 63 ~~~~~ivvv~~~~~~~~~~~~v~~~~~~~~~~~~i~~al~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~ 136 (236)
T 2px7_A 63 RDAAEVLVALPPGAEPPKGLGAVFLEGGATRQASVARLLEAAS------LPLVLVHDVARPFVSRGLVARVLEAAQRSGA 136 (236)
T ss_dssp TTCSEEEEEECTTCCCCTTCSCEEEECCSSHHHHHHHHHHHCC------SSEEEECCTTCCCCCHHHHHHHHHHHHHHSE
T ss_pred CCCCeEEEEeCHHHHHhhcCCcEEEeCCCchHHHHHHHHHHcC------CCeEEEecCccccCCHHHHHHHHHHHHhcCC
Confidence 466777777663 2220 0011 1367889999988875 37899999997 5554 47999998877643
Q ss_pred cEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHH
Q 018109 76 DITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL 155 (360)
Q Consensus 76 ~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll 155 (360)
.+.+.+..+ +..+ .+ +|++..+.+++. ..... ..++|+++.|..++
T Consensus 137 --~i~~~~~~~--~~~~----~~-~G~v~~~~~~~~------------------------~~~~~-~~~~f~~~~l~~~~ 182 (236)
T 2px7_A 137 --AVPVLPVPD--TLMA----PE-GEAYGRVVPREA------------------------FRLVQ-TPQGFFTALLREAH 182 (236)
T ss_dssp --EEEEEECCS--EEEE----EC-SSSCEEEECGGG------------------------CEEEC-SCEEEEHHHHHHHH
T ss_pred --eEEEEecCC--cEEE----ec-CCeEEecCChHh------------------------hcccc-CCeEEcHHHHHHHH
Confidence 343444433 2111 24 677776554211 01122 35678888776655
Q ss_pred HhhCCCCcch--hhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhhc
Q 018109 156 RWRFPTANDF--GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 156 ~~~~~~~~~~--~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~ 206 (360)
+........+ ...++.. .+.++..+..++.|.||+||++|..++..+..
T Consensus 183 ~~~~~~g~~~~d~~~ll~~--~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 233 (236)
T 2px7_A 183 AYARRKGLEASDDAQLVQA--LGYPVALVEGEATAFKITHPQDLVLAEALARV 233 (236)
T ss_dssp HHHHHHTCCCSSHHHHHHH--TTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred HHHHhcCCCchhHHHHHHH--cCCcEEEEECCccccCCCCHHHHHHHHHHHHh
Confidence 4321000000 0112211 14578888888899999999999999876543
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0016 Score=57.74 Aligned_cols=162 Identities=12% Similarity=0.038 Sum_probs=93.7
Q ss_pred cEEEeeCcccCCCCCCc----------c---ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeec-CHHHHHHHHH
Q 018109 7 NSQVLAATQTPGEAGKR----------W---FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHR 71 (360)
Q Consensus 7 ~~~i~~~~~~~~~~~~~----------~---~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~-dl~~ll~~h~ 71 (360)
+.+++++.++..+.... + ..|+.++++.+..++.+ .+.+++++||. +.+. .+.++++.|+
T Consensus 51 ~~~ivvv~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~i~~al~~~~~-----~~~~lv~~~D~P~~~~~~i~~l~~~~~ 125 (236)
T 1i52_A 51 VKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGD-----AQWVLVHDAARPCLHQDDLARLLALSE 125 (236)
T ss_dssp EEEEEEEECTTCCSGGGSGGGGCTTEEEEECCSSHHHHHHHHHHTSTT-----CSEEEECCTTCTTCCHHHHHHHHGGGG
T ss_pred CCeEEEEeCccHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHHhcCC-----CCEEEEEcCccccCCHHHHHHHHHHHH
Confidence 78888887764432211 1 14888999999888742 37899999998 5554 4788998887
Q ss_pred HcCCcEEEEEeecCCCCCCcccEEEECCC-CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHH
Q 018109 72 QSGADITISCLPMDDSRASDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEI 150 (360)
Q Consensus 72 ~~~a~~tll~~~~~~~~~~~~g~v~~d~~-g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~v 150 (360)
+.++.. +++.+..+ . + -..+++ +++....+. . .-+..-+.++|+.+.
T Consensus 126 ~~~~~~-~~~~~~~~--~--~--~~~~~~~~~i~~~~~~---~----------------------~i~~~~~p~~f~~~~ 173 (236)
T 1i52_A 126 TSRTGG-ILAAPVRD--T--M--KRAEPGKNAIAHTVDR---N----------------------GLWHALTPQFFPREL 173 (236)
T ss_dssp TCSSCE-EEEEECCS--C--E--EEECTTSSSEEEEECC---T----------------------TCEEEEEEEEEEHHH
T ss_pred hcCCeE-EEEEeccc--c--E--EEEcCCCCceeeccCh---H----------------------hheeeeCCceecHHH
Confidence 665322 33344332 1 1 112333 454432211 0 112223677888877
Q ss_pred HHHHHHhhCCCCcchh--hcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhhcC
Q 018109 151 LLNLLRWRFPTANDFG--SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 207 (360)
Q Consensus 151 l~~ll~~~~~~~~~~~--~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~ 207 (360)
|..+++........+. ..++.. .+.++..++.++.|+||+||++|..++..+..+
T Consensus 174 l~~~~~~~~~~g~~~td~~~~~~~--~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~ 230 (236)
T 1i52_A 174 LHDCLTRALNEGATITDEASALEY--CGFHPQLVEGRADNIKVTRPEDLALAEFYLTRT 230 (236)
T ss_dssp HHHHHHHHHHTTCCCCSHHHHHHH--TTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhcCCCcccHHHHHHH--cCCCEEEEecCccccccCCHHHHHHHHHHHHHh
Confidence 7665543211100000 111211 146788888888999999999999998776543
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0031 Score=62.53 Aligned_cols=116 Identities=15% Similarity=0.159 Sum_probs=77.9
Q ss_pred ccccccHHHHHHH------hHhhcCCCCCCCCeEEEEcCceeee-cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEE
Q 018109 23 RWFQGTADAVRQF------HWLFEDPRNKVIEDVLILSGDHLYR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLM 95 (360)
Q Consensus 23 ~~~lGTa~al~~a------~~~i~~~~~~~~~~fLVv~gD~i~~-~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v 95 (360)
..|.|||+++... ..++++ ..++|+|.++|+++. .|+ .++.+|.++++++++.+.+...+ ...+|++
T Consensus 186 ~~P~G~Gg~~~aL~~sGlL~~l~~~----G~e~i~V~N~DNL~~~~D~-~llg~~~~~~ad~~~~v~~k~~~-d~~~Gvl 259 (505)
T 2oeg_A 186 WAPPGHGDIYTALYGSGKLQELVEQ----GYRYMFVSNGDNLGATIDK-RVLAYMEKEKIDFLMEVCRRTES-DKKGGHL 259 (505)
T ss_dssp EECCCTTHHHHHHHHTTHHHHHHHT----TCCEEEEECTTCTTCCCCH-HHHHHHHHHTCSEEEEEEECCTT-CCSSEEE
T ss_pred cCcCCchHHHHHHHhcChHHHHHhc----CCCEEEEEECCccccccCH-HHHHHHHhcCCcEEEEEEEecCC-ccceeEE
Confidence 3468999999755 233432 137999999999884 578 99999999999999999887763 2568887
Q ss_pred EEC------CCCc-------e--EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHh
Q 018109 96 KIN------NEGR-------V--LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 157 (360)
Q Consensus 96 ~~d------~~g~-------V--~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~ 157 (360)
..+ .+|+ + +++.+-|+..... + .. ...-.+.|+...+|+-+.+.++++.
T Consensus 260 ~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~--------~---~g--~~~f~~~Ninn~~~~l~~l~~~~~~ 323 (505)
T 2oeg_A 260 ARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMES--------F---QD--INKYSFFNTNNLWIRLPVLLETMQE 323 (505)
T ss_dssp EEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHH--------H---HC--TTTTCEEEEEEEEEEHHHHHHHHHH
T ss_pred EEecccccccCCccccccCceeEEEeccCChhhhhc--------c---cC--ccccCeeEEEEEEEEHHHHHHHHhh
Confidence 762 4677 3 3322333321100 0 00 0012457899999999999888776
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0086 Score=53.30 Aligned_cols=139 Identities=17% Similarity=0.096 Sum_probs=89.2
Q ss_pred HHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEE
Q 018109 29 ADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSF 106 (360)
Q Consensus 29 a~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~ 106 (360)
.++++++...+.+. ...+.+|++.||. +.+.+ +..+++.+++ +.+.++...++.+ +..| .+++|+|.+.
T Consensus 84 ~~sv~~gl~~~~~~--~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~~p~~d--t~~~----~~~~g~v~~~ 154 (231)
T 3q80_A 84 TDTVNLALTVLSGT--AEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPVLPLSD--TIKA----VDANGVVLGT 154 (231)
T ss_dssp HHHHHHHHGGGC-----CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEEECCSS--CEEE----ECTTSBEEEC
T ss_pred HHHHHHHHHHhhhc--CCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEEEeccC--CEEE----EcCCCcEEEe
Confidence 68899998888630 0136789999998 55554 7889988875 2455677777766 3233 3567777665
Q ss_pred EecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccccc-----ccCceEE
Q 018109 107 SEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASA-----NEQFLKA 181 (360)
Q Consensus 107 ~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i-----~~~~I~~ 181 (360)
.+ +.. -+.+.+ -++|+.+.|.+.++.....+ ...++++.+ .+.++..
T Consensus 155 ~~---r~~---------------------l~~~qT-Pq~F~~~~L~~a~~~~~~~n---~~~~~TD~~~~~~~~g~~v~~ 206 (231)
T 3q80_A 155 PE---RAG---------------------LRAVQT-PQGFTTDLLLRSYQRGSLDL---PAAEYTDDASLVEHIGGQVQV 206 (231)
T ss_dssp CC---GGG---------------------EEEECS-CEEEEHHHHHHHHHHHTC--------CCSSSHHHHHHTTCCCEE
T ss_pred cc---hhh---------------------eEEEcC-CcEEEHHHHHHHHHHHHhhc---CCCCCCcHHHHHHHcCCcEEE
Confidence 32 211 123444 58999998887766542211 112344432 2677887
Q ss_pred EEeCCceeecCCHHHHHHHHHHh
Q 018109 182 YLFNDYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 182 ~~~~g~w~digtp~~~~~a~~~~ 204 (360)
++-+..++.|.+|+++..++..+
T Consensus 207 v~g~~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 207 VDGDPLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp EECCGGGCCCCSHHHHHHHHHHH
T ss_pred EECCccccCcCCHHHHHHHHHHh
Confidence 77777789999999999887654
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.017 Score=50.74 Aligned_cols=158 Identities=15% Similarity=0.093 Sum_probs=90.2
Q ss_pred cEEEeeCcccCCC-----CC-----Cccccc---cHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeec-CHHHHHHHHH
Q 018109 7 NSQVLAATQTPGE-----AG-----KRWFQG---TADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHR 71 (360)
Q Consensus 7 ~~~i~~~~~~~~~-----~~-----~~~~lG---Ta~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~-dl~~ll~~h~ 71 (360)
+.+++++.++..+ .. ..+..| ..++++.+...+.+. ..+.+++++||. +.+. .+.++++.++
T Consensus 57 ~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~sv~~al~~~~~~---~~~~vlv~~~D~Pli~~~~i~~l~~~~~ 133 (234)
T 1vpa_A 57 IDGVVIVTRREWFEVVEKRVFHEKVLGIVEGGDTRSQSVRSALEFLEKF---SPSYVLVHDSARPFLRKKHVSEVLRRAR 133 (234)
T ss_dssp CSEEEEEECGGGHHHHHTTCCCTTEEEEEECCSSHHHHHHHHHHHHGGG---CCSEEEEEETTSCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEChHHHHHHHHHhccCCceEEeCCCCcHHHHHHHHHHHhhhc---CCCEEEEecCcccCCCHHHHHHHHHHHH
Confidence 6788877766431 11 123344 567788888777410 125778888998 5544 5799999887
Q ss_pred HcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHH
Q 018109 72 QSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 151 (360)
Q Consensus 72 ~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl 151 (360)
+.++ .+++.+..+ . +...+++| + .+.++.. .+..-..++|+++.|
T Consensus 134 ~~~~--~i~~~~~~~--~----~~~~~~~g-v-~~~~r~~-------------------------~~~~~~p~~f~~~~l 178 (234)
T 1vpa_A 134 ETGA--ATLALKNSD--A----LVRVENDR-I-EYIPRKG-------------------------VYRILTPQAFSYEIL 178 (234)
T ss_dssp HHSE--EEEEEECCS--E----EEEEETTE-E-EEECCTT-------------------------EEEEEEEEEEEHHHH
T ss_pred hcCC--EEEEEecCC--c----EEEECCCC-c-ccCChhH-------------------------eeeecCCccccHHHH
Confidence 7653 333444432 1 22234556 5 5543211 111223458898888
Q ss_pred HHHHHhhCCCCcchhhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhhc
Q 018109 152 LNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 152 ~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~ 206 (360)
..+++.. ....+. ..++.. .+.++..++.++.|.||+||++|..++..+..
T Consensus 179 ~~~~~~~-~~~~~~-~~~~~~--~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 229 (234)
T 1vpa_A 179 KKAHENG-GEWADD-TEPVQK--LGVKIALVEGDPLCFKVTFKEDLELARIIARE 229 (234)
T ss_dssp HHHHTTC-CCCSSS-HHHHHT--TTCCCEEEECCGGGCCCCSTTHHHHHHHHHHH
T ss_pred HHHHHhc-CCCCcH-HHHHHH--cCCcEEEEECCchhcCCCCHHHHHHHHHHHhc
Confidence 7665431 000110 112221 14567777777789999999999999875543
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0012 Score=57.21 Aligned_cols=111 Identities=11% Similarity=0.010 Sum_probs=61.3
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHH-HHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCC
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMD-FVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 100 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~-ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 100 (360)
+..|++++|+.+...++ .+.+++++||. +.+.+ ++. ++ +.++++ ... +
T Consensus 80 ~~~g~~~~i~~al~~~~------~~~~lv~~~D~P~i~~~~i~~~l~------~~~~~v----------------~~~-~ 130 (201)
T 2e8b_A 80 EESASIIGLYTALKHAK------EENVFVLSGDLPLMKKETVLYVLE------NFKEPV----------------SVA-K 130 (201)
T ss_dssp SSCCHHHHHHHHHHHCS------SSEEEEEETTCTTCCHHHHHHHHH------TCCSSE----------------EEE-E
T ss_pred CCCCcHHHHHHHHHHcC------CCCEEEEeCCcCcCCHHHHHHHHh------cCCEEE----------------Eec-C
Confidence 45799999999998885 37999999999 44444 455 55 111111 000 1
Q ss_pred CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceE
Q 018109 101 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLK 180 (360)
Q Consensus 101 g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~ 180 (360)
|+ ....+|+| |+++++..+.+...... ..+..+++..++.
T Consensus 131 g~----------------------------------~~p~~giy-~~~~~~~~l~~~~~~g~-----~~~~~~l~~~~~~ 170 (201)
T 2e8b_A 131 TE----------------------------------KLHTLVGV-YSKKLLEKIEERIKKGD-----YRIWALLKDVGYN 170 (201)
T ss_dssp SS----------------------------------SEEEEEEE-EEGGGHHHHHHHHHTTC-----CCHHHHHHHHCCE
T ss_pred Cc----------------------------------eeeEEEEE-eChhHHHHHHHHHHcCC-----chHHHHHHHCCeE
Confidence 11 13467999 99998876532111111 1233333333566
Q ss_pred EEEeC--Ccee--ecCCHHHHHHHHHH
Q 018109 181 AYLFN--DYWE--DIGTIRSFFEANLA 203 (360)
Q Consensus 181 ~~~~~--g~w~--digtp~~~~~a~~~ 203 (360)
.+.++ +.|. |++||++|.++.+.
T Consensus 171 ~~~~~~~~~~~~~dintpedl~~~~~~ 197 (201)
T 2e8b_A 171 EVEIPEELRYTLLNMNTKEDLKRILAI 197 (201)
T ss_dssp EEECCGGGGGGGCCSCCC---------
T ss_pred EeccccccchhhcCCCCHHHHHHHHHH
Confidence 66663 5799 99999999887654
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0045 Score=59.58 Aligned_cols=119 Identities=10% Similarity=0.047 Sum_probs=80.8
Q ss_pred cccccHHHHHHHhH--hhcCCCCCCCCeEEEEcCce-eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEE-CC
Q 018109 24 WFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NN 99 (360)
Q Consensus 24 ~~lGTa~al~~a~~--~i~~~~~~~~~~fLVv~gD~-i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~-d~ 99 (360)
.|.|+|+....... .+++.....-+.+.|.++|+ +.......++.+|.++++++++-+.+...+ -.+.|.+.. |.
T Consensus 153 ~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~-dek~Gvl~~~dg 231 (405)
T 3oc9_A 153 APNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFK-EEKVGVLVKEQE 231 (405)
T ss_dssp EECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCST-TCSCCEEEEETT
T ss_pred ccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCcccccCCHHHHHHHHHcCCCEEEEEEECCCC-CCccceEEEECC
Confidence 46899998776532 12110001136899999999 999999999999999999999988887652 257888774 33
Q ss_pred CCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHH
Q 018109 100 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL 155 (360)
Q Consensus 100 ~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll 155 (360)
.-+|+++.|.|.. .. ....+..+ ..+..|.++|+|+.++|.++.
T Consensus 232 ~~~vvEysei~~e-~e-~~~~~g~l----------~fn~~Ni~~h~fs~~fL~~i~ 275 (405)
T 3oc9_A 232 RIKVVEYTELTDE-LN-KQLSNGEF----------IYNCGHISINGYSTSFLEKAA 275 (405)
T ss_dssp EEEEECGGGCCTT-TT-CBCTTSCB----------SSCEEEEEEEEEEHHHHHHHT
T ss_pred eeEEEEEeeCCHH-Hh-hcCCCCce----------eeccceeEeeecCHHHHHHhh
Confidence 3378888877765 21 00011000 134678999999999998875
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0058 Score=52.18 Aligned_cols=112 Identities=9% Similarity=0.046 Sum_probs=67.4
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCC
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 101 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~-~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g 101 (360)
+.+|++++++.+..++.. ..+.+++++||. +. ...++++++. +.++++++... +|
T Consensus 77 ~~~g~~~~i~~al~~~~~----~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~~~~-----------------~g 133 (197)
T 2wee_A 77 VERGCAASLRVALARVHP----RATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMVCRY-----------------AD 133 (197)
T ss_dssp ---CCHHHHHHHHTTSCT----TEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEEEEE-----------------TT
T ss_pred cccCHHHHHHHHHHHhcc----cCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEEEec-----------------CC
Confidence 346999999999988731 137899999999 44 4557888877 44444332110 11
Q ss_pred ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccccccc--Cce
Q 018109 102 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANE--QFL 179 (360)
Q Consensus 102 ~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~--~~I 179 (360)
+ + . .-++|+++.|..+. .. ... .-+..+++. .++
T Consensus 134 ~-------~---~---------------------------~P~~~~~~~l~~l~-~~-~~~-----~~~~~~l~~~~~~v 169 (197)
T 2wee_A 134 G-------V---G---------------------------HPFWFSRTVFGELA-RL-HGD-----KGVWKLVHSGRHPV 169 (197)
T ss_dssp E-------E---E---------------------------EEEEEEGGGHHHHH-TC-CST-----THHHHHHHCTTSCE
T ss_pred C-------c---C---------------------------CCEEECHHHHHHHH-hC-CCC-----hhHHHHHHhCcccE
Confidence 1 0 0 01277888887653 22 111 112233332 457
Q ss_pred EEEEe-CCceeecCCHHHHHHHHH
Q 018109 180 KAYLF-NDYWEDIGTIRSFFEANL 202 (360)
Q Consensus 180 ~~~~~-~g~w~digtp~~~~~a~~ 202 (360)
..++. +++|.||+||++|.++..
T Consensus 170 ~~v~~~~~~~~dIdtpeDl~~~~~ 193 (197)
T 2wee_A 170 RELAVDGCVPLDVDTWDDYRRLLE 193 (197)
T ss_dssp EEEECSSCCCCCCSSHHHHHHHHT
T ss_pred EEEEcCcccccCCCCHHHHHHHHH
Confidence 77776 468999999999988754
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.02 Score=48.69 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=71.9
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCcee--eecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCC
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL--YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 101 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i--~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g 101 (360)
+..|++++++.+..++.. ..+.++++.||.. ...+++++++. +.++++++... ++
T Consensus 77 ~~~g~~~~i~~al~~~~~----~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~-----------------~g 133 (199)
T 2waw_A 77 AGLGCSSSLKSALTWVDP----TAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY-----------------AN 133 (199)
T ss_dssp CCTTCCCHHHHHHHTSCT----TCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE-----------------TT
T ss_pred cccCHHHHHHHHHHhhhc----cCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec-----------------CC
Confidence 346999999999988831 1478999999993 35557888887 44554432110 11
Q ss_pred ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccc--cCce
Q 018109 102 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASAN--EQFL 179 (360)
Q Consensus 102 ~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~--~~~I 179 (360)
+ + . .-++|+++.|..+. .. ..... +..+++ +.++
T Consensus 134 ~-------~---~---------------------------~P~~~~~~~l~~~~-~~-~~~~~-----~~~~l~~~~~~v 169 (199)
T 2waw_A 134 G-------I---G---------------------------HPFWVSRGVFGDLA-EL-HGDKG-----VWRLIESGRHGV 169 (199)
T ss_dssp E-------E---E---------------------------EEEEEEGGGHHHHH-TC-SSTTC-----HHHHHHSSSSCE
T ss_pred c-------c---c---------------------------CCEEEcHHHHHHHH-hc-CCCHH-----HHHHHHhCcccE
Confidence 1 0 0 01377888887654 21 11111 222232 2467
Q ss_pred EEEEe-CCceeecCCHHHHHHHHHHhh
Q 018109 180 KAYLF-NDYWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 180 ~~~~~-~g~w~digtp~~~~~a~~~~l 205 (360)
..++. +++|.||+||++|..++..+.
T Consensus 170 ~~~~~~~~~~~dIdtpeDl~~~~~~~~ 196 (199)
T 2waw_A 170 RRIRVDADVPLDVDTWDDYERLLASVV 196 (199)
T ss_dssp EEEECSSCCCCCCSSHHHHHHHHHHHH
T ss_pred EEEEcCcccccCCCCHHHHHHHHHHHh
Confidence 77776 568999999999998876553
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.013 Score=50.49 Aligned_cols=48 Identities=17% Similarity=0.389 Sum_probs=36.2
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcE
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADI 77 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~ 77 (360)
|..|++++|+.+...+.+ .+.+++++||. +.+.+ ++++++.+ +.++++
T Consensus 69 ~~~G~~~si~~al~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~ 118 (197)
T 3d5n_A 69 WNEGISTSLKLGLRFFKD-----YDAVLVALGDMPFVTKEDVNKIINTF-KPNCKA 118 (197)
T ss_dssp GGGCHHHHHHHHHHHTTT-----SSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSE
T ss_pred CCCCHHHHHHHHHHhhcc-----CCcEEEEeCCccccCHHHHHHHHHHh-cCCCcE
Confidence 457999999999988853 36899999999 55544 68888876 444443
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.035 Score=47.91 Aligned_cols=38 Identities=13% Similarity=-0.039 Sum_probs=31.3
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHH
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQN 69 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~ 69 (360)
.|++++|+.+..+++ .+.++++.||. +.+.+ ++.+++.
T Consensus 77 ~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 77 PGPLAGMLSVMQQEA------GEWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp CSHHHHHHHHHHHCC------SSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred CCHHHHHHHHHHhCC------CCcEEEEeCCcCcCCHHHHHHHHhh
Confidence 699999999998885 37899999999 55655 6788765
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.044 Score=46.69 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=37.1
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHH-----cCCcEEEEEeecC
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQ-----SGADITISCLPMD 85 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~-----~~a~~tll~~~~~ 85 (360)
.|++++|+.+...+ . +.|+++.||. +...++.++++.|++ .+.+.++++.+..
T Consensus 78 ~g~~~si~~al~~~-~------~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~ 137 (196)
T 3rsb_A 78 KGYIEDLNECIGYF-S------EPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKE 137 (196)
T ss_dssp ---CCCCCTTTTTC-S------SCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEETT
T ss_pred CCcHHHHHHHHHhC-C------CCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEcc
Confidence 57788888887766 2 8999999999 455668999999987 5566666666554
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.06 Score=53.18 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=76.3
Q ss_pred cccccHHHHHHHhH--hhcCCCCCCCCeEEEEcCcee-e-ecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECC
Q 018109 24 WFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHL-Y-RMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 99 (360)
Q Consensus 24 ~~lGTa~al~~a~~--~i~~~~~~~~~~fLVv~gD~i-~-~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~ 99 (360)
.|.|+|+.+..... .+++.....-+.+.+.+.|.+ . ..|. .++.+|.++++++++.+.+...+ ..+.|++...+
T Consensus 223 ~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~~~~Dp-~~lg~~~~~~~~~~~~vv~k~~~-~e~~Gvl~~~~ 300 (486)
T 2yqc_A 223 SPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADP-IFIGFAIAKKFDLATKVVRKRDA-NESVGLIVLDQ 300 (486)
T ss_dssp EECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBTTCCTTCH-HHHHHHHHHTCSEEEEEEECCST-TCCCCEEEEET
T ss_pred CcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCceeeccCH-HHHHHHHHcCCCEEEEEEEcCCC-CCceeEEEEEe
Confidence 47899998876642 111100012368888899984 3 4554 58889999999999988776442 25688877431
Q ss_pred -CC--ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHh
Q 018109 100 -EG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 157 (360)
Q Consensus 100 -~g--~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~ 157 (360)
+| +|+++.|+|...... .+.+ ++.. ...++.|+++|+|+.++|.+++++
T Consensus 301 ~dg~~~vvEy~E~~~~~~~~---~~~~----~~~~--~~~~~~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 301 DNQKPCVIEYSEISQELANK---KDPQ----DSSK--LFLRAANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp TTTEEEEECGGGSCHHHHHC---EETT----EEEE--ESSCEEEEEEEEEEHHHHHHHHHH
T ss_pred cCCCEEEEEEecCCHHHhhc---cccc----cccc--ccccceeEEEEEEeHHHHHHHHHh
Confidence 45 477887877532110 0000 0000 023578999999999999885554
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.26 E-value=1.4 Score=38.09 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=35.2
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEE
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 79 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tl 79 (360)
.|..++|+.+...+ . +.+ ++.||. +.+.+ +..+++.+.+.++++++
T Consensus 70 ~G~~~si~~gl~~~-~------~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~ 117 (208)
T 3ngw_A 70 VGSIAGIHAALRHF-G------SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208)
T ss_dssp CSHHHHHHHHHHHH-S------SEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CChHHHHHHHHHHc-C------CCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEE
Confidence 47779999999887 4 678 999999 65665 68888888766665443
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=88.99 E-value=0.31 Score=46.28 Aligned_cols=126 Identities=14% Similarity=0.085 Sum_probs=72.4
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeec-CHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~-dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
.|+.++++.+...++ .+.++++.||. +.+. .++++++.+++.+ .++...++.+ +..+.
T Consensus 74 ~g~~~sv~~aL~~l~------~d~vlv~~~D~Pli~~~~i~~li~~~~~~~--a~i~~~~~~d--~vk~v---------- 133 (371)
T 1w55_A 74 DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDKAD--CITPALKVAD--TTLFD---------- 133 (371)
T ss_dssp SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGGCS--EEEEEECCCS--CEEET----------
T ss_pred CChHHHHHHHHHhcC------CCeEEEEeCCcccCCHHHHHHHHHHHHhcC--CEEEEEEeec--Ceeee----------
Confidence 356789999988775 37899999998 4444 4788988877653 3444444433 11110
Q ss_pred EEEEecCCccccccccccccccccccccccccCceee-eeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIAS-MGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAY 182 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~ 182 (360)
.+.++.. .+.. ..-++|+.+.|..+++... ...+. ..++.. .+.++..+
T Consensus 134 ---~~t~~r~-----------------------~l~~~~~P~~f~~~~l~~~~~~~~-~~td~-~~ll~~--~g~~V~~v 183 (371)
T 1w55_A 134 ---NEALQRE-----------------------KIKLIQTPQISKTKLLKKALDQNL-EFTDD-STAIAA--MGGKIWFV 183 (371)
T ss_dssp ---TEEECGG-----------------------GCCEECSCEEEEHHHHHHHTSSCC-CCSSH-HHHHHT--TTCCEEEE
T ss_pred ---eeecCcc-----------------------ceeecCCcceecHHHHHHHHHhcc-cccCH-HHHHHh--CCCcEEEE
Confidence 0111110 0111 1235688887766543311 00010 111211 14678888
Q ss_pred EeCCceeecCCHHHHHHHH
Q 018109 183 LFNDYWEDIGTIRSFFEAN 201 (360)
Q Consensus 183 ~~~g~w~digtp~~~~~a~ 201 (360)
+.++.|+||+||++|..++
T Consensus 184 ~~~~~~~dIdTpeDL~~Ae 202 (371)
T 1w55_A 184 EGEENARKLTFKEDLKKLD 202 (371)
T ss_dssp ECCGGGCCCCSGGGGGGSC
T ss_pred ECCccccCCCCHHHHHHHH
Confidence 8778899999999998775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 360 | ||||
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 5e-44 | |
| d1yp2a1 | 135 | b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt | 2e-33 | |
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 1e-13 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 7e-11 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 2e-10 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 3e-05 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 152 bits (383), Expect = 5e-44
Identities = 119/204 (58%), Positives = 158/204 (77%), Gaps = 5/204 (2%)
Query: 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 83
WFQGTADAVRQ+ WLFE+ + LIL+GDHLYRMDY F+Q HR++ ADIT++ LP
Sbjct: 107 WFQGTADAVRQYLWLFEEHTV---LEYLILAGDHLYRMDYEKFIQAHRETDADITVAALP 163
Query: 84 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGV 143
MD+ RA+ FGLMKI+ EGR++ F+EKP+G+ L+AM VDTT+LGL + A+E P+IASMG+
Sbjct: 164 MDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGI 223
Query: 144 YLFKKEILLNLLRWRFPTANDFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANL 202
Y+ K+++LNLLR +FP ANDFGSE+IP + + ++AYL++ YWEDIGTI +F+ ANL
Sbjct: 224 YVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANL 283
Query: 203 ALTAHP-PMFSFYDATKPIYTSRR 225
+T P P FSFYD + PIYT R
Sbjct: 284 GITKKPVPDFSFYDRSAPIYTQPR 307
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 119 bits (298), Expect = 2e-33
Identities = 65/134 (48%), Positives = 96/134 (71%)
Query: 227 LPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE 286
LPPSK+ D+ + DS+I G I + I HSVVG+RS I+ ++D++++GAD+YETDA+
Sbjct: 2 LPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDAD 61
Query: 287 VASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT 346
L A+G VP+GIG+N IK IIDKNARIG NV I N + +QEA R +G++I+SG+
Sbjct: 62 RKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIV 121
Query: 347 VILKNSVITDGFVI 360
++K+++I G +I
Sbjct: 122 TVIKDALIPSGIII 135
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 67.9 bits (166), Expect = 1e-13
Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 33/182 (18%)
Query: 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 83
G A A L+L + Y D+ + + + Q ++
Sbjct: 83 SPDGLAQAFLIGE-----SFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYH 137
Query: 84 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGV 143
+ D +G+++ + G+ +S EKP E K A G+
Sbjct: 138 VLD--PERYGVVEFDQGGKAISLEEKPL---------------------EPKSNYAVTGL 174
Query: 144 YLFKKEILLNLLRWRFPTA--NDFGSEIIPASANEQFLKAYLFND--YWEDIGTIRSFFE 199
Y + +++ +++ R P+ +++ A L + W D GT S E
Sbjct: 175 YFYDQQV-VDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLE 233
Query: 200 AN 201
A
Sbjct: 234 AG 235
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 59.8 bits (145), Expect = 7e-11
Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 39/182 (21%)
Query: 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 86
G A A L+L + + + +++ T+ + D
Sbjct: 86 GLAQAFIIGETFLNGE-----PSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD 140
Query: 87 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 146
FG+++ ++ R +S EKPK + K A G+Y +
Sbjct: 141 --PERFGVVEFDDNFRAISLEEKPK---------------------QPKSNWAVTGLYFY 177
Query: 147 KKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN-------DYWEDIGTIRSFFE 199
++ + + P+ E+ S N+ +L+A W D GT S E
Sbjct: 178 DSKV-VEYAKQVKPSER---GELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIE 233
Query: 200 AN 201
A+
Sbjct: 234 AS 235
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 58.4 bits (141), Expect = 2e-10
Identities = 35/184 (19%), Positives = 58/184 (31%), Gaps = 37/184 (20%)
Query: 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 83
+G ADA D + L+L + Y + + ++ I
Sbjct: 85 EPRGIADAFIVGKDFIGDS-----KVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYY 139
Query: 84 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGV 143
+ D FG+++ ++EGRV+S EKP K G+
Sbjct: 140 VRD--PRPFGVVEFDSEGRVISIEEKPS---------------------RPKSNYVVPGL 176
Query: 144 YLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYL------FNDYWEDIGTIRSF 197
Y + +++ R +D G I + E L W D GT
Sbjct: 177 YFYDNQVVEIARRIE---PSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGL 233
Query: 198 FEAN 201
EA+
Sbjct: 234 LEAS 237
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 42.8 bits (99), Expect = 3e-05
Identities = 15/166 (9%), Positives = 48/166 (28%), Gaps = 4/166 (2%)
Query: 36 HWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLM 95
R + L+ +GD + V + + + +
Sbjct: 84 RMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATID 143
Query: 96 KINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL 155
G+ + + A+ + + +++ + + + G ++ ++ +
Sbjct: 144 FHKAHGKKATLTATFPPGRFGALDIQAGQVRSFQEKPKGDGAMINGGFFVLNPSVIDLID 203
Query: 156 RWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEAN 201
+ E + A + L A+ +W+ + T+R
Sbjct: 204 NDAT----TWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLE 245
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 99.92 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 99.88 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.87 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 99.85 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.71 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 99.7 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.67 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.59 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 99.47 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.36 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.33 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.27 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.24 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.24 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.2 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.19 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 99.17 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 99.16 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.16 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.16 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.08 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.08 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.06 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 99.06 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 99.01 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.9 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 98.82 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.77 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.77 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.75 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.73 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.72 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.72 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.64 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.63 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.58 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.38 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.34 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.3 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.23 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.22 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.11 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 96.72 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 96.58 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 96.45 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 95.26 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 93.06 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 92.27 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 91.31 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 89.13 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 82.96 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.92 E-value=7.3e-25 Score=203.63 Aligned_cols=198 Identities=60% Similarity=1.117 Sum_probs=163.0
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
+++||+++++.+..++++ ...++|+|++||++++.|+..+++.|+.+++.+++++..++.+...+||++.+|++++|
T Consensus 107 ~~~g~~~ai~~~~~~i~~---~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvv~~d~~~~v 183 (307)
T d1yp2a2 107 WFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRI 183 (307)
T ss_dssp CCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTSBE
T ss_pred cccchhHHHHHhHHhhhc---cccceEEEecCcceeccchhhhhhhhhhccccceEEEEecccccccccceEEECCCCcE
Confidence 457999999999999975 23578999999999999999999999999999998888777655678999999999999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccc-cCceEEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASAN-EQFLKAY 182 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~-~~~I~~~ 182 (360)
..|.|||..........+..++............+.++|+|+|++++|.+++++..+...++..++++.+++ +.++.+|
T Consensus 184 ~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~~~~d~i~~li~~g~~v~~~ 263 (307)
T d1yp2a2 184 IEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAY 263 (307)
T ss_dssp EEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccccchHHHHHHHHHHCCCcEEEE
Confidence 999999987654444455545544333322345788999999999999888877666666777888988876 4689999
Q ss_pred EeCCceeecCCHHHHHHHHHHhhcCC-CCCCccCCCCceeccC
Q 018109 183 LFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSR 224 (360)
Q Consensus 183 ~~~g~w~digtp~~~~~a~~~~l~~~-~~~~~~~~~~~v~~~~ 224 (360)
+++|+|.|+|||++|++|++++++.. +...+++++++|++.+
T Consensus 264 ~~~g~W~Digt~~~~~~a~~~ll~~~~~~~~~~~~~~~i~~~~ 306 (307)
T d1yp2a2 264 LYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQP 306 (307)
T ss_dssp ECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCC
T ss_pred EeCCeEEECcCHHHHHHHHHHHhcCCCchhhccCCCCCccCCC
Confidence 99999999999999999999999876 3457888999998764
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.88 E-value=2.3e-22 Score=185.76 Aligned_cols=173 Identities=19% Similarity=0.272 Sum_probs=139.2
Q ss_pred CCCcEEEeeCcc-cCCC------------------CCCccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHH
Q 018109 4 LTGNSQVLAATQ-TPGE------------------AGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYM 64 (360)
Q Consensus 4 ~~g~~~i~~~~~-~~~~------------------~~~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~ 64 (360)
.+|+.+|+++.+ +..+ ..+++++|||+||+.|.+++++ ++.|+++++|++++.|+.
T Consensus 44 ~~Gi~ei~ii~~~~~~~~i~~~~~~~~~~g~~I~y~~q~~~~Gta~ai~~a~~~i~~-----~~~~lil~dD~~~~~dl~ 118 (292)
T d1fxoa_ 44 LAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGN-----DLSALVLGDNLYYGHDFH 118 (292)
T ss_dssp HTTCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCGGGHHHHTHHHHTT-----SEEEEEETTEEEECTTHH
T ss_pred HCCCCEEEEEeCcCCHHHHHHHhccccccCeEEEEccCCCCCcHHHHHHhhhhhcCC-----CceEEEEccccccCcCHH
Confidence 468888876554 3332 1234568999999999999985 356788888999999999
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEE
Q 018109 65 DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 144 (360)
Q Consensus 65 ~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIy 144 (360)
+++++|.++++.+++.+.++++ |++||++.+|+++++++|.|||..+. ++++.+|+|
T Consensus 119 ~ll~~h~~~~~~~~i~~~~V~~--p~~yGV~~~d~~~ki~~~~EKP~~p~---------------------Snla~~G~Y 175 (292)
T d1fxoa_ 119 ELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLY 175 (292)
T ss_dssp HHHHHHHTCCSSEEEEEEECSC--GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEE
T ss_pred HHHHHHHhCCCCcEEEEEECCC--HHHCeEEEEcCCCCEeEEEECCCCCC---------------------CCcEEEEEE
Confidence 9999999999999999999987 67999999999999999999998653 689999999
Q ss_pred EEeHHHHHHHHHhhCCCC--cchhhcccccccccCceEEEEeC--CceeecCCHHHHHHHHHHhh
Q 018109 145 LFKKEILLNLLRWRFPTA--NDFGSEIIPASANEQFLKAYLFN--DYWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 145 ifs~~vl~~ll~~~~~~~--~~~~~~~l~~~i~~~~I~~~~~~--g~w~digtp~~~~~a~~~~l 205 (360)
+|++++++. +++..+.. .....|+++.+++++++..+.+. .+|+|+||+++|++|+..+.
T Consensus 176 ~f~~~~~~~-~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~ 239 (292)
T d1fxoa_ 176 FYDQQVVDI-ARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 239 (292)
T ss_dssp EECTTHHHH-HHHCCCCTTSSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred EEChHHHHH-HHhCCCCCCCchhhHHHHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 999999974 46654332 11234677777788888887773 35999999999999997664
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.87 E-value=1.8e-21 Score=159.88 Aligned_cols=134 Identities=49% Similarity=0.866 Sum_probs=124.7
Q ss_pred CCCceecCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeE
Q 018109 227 LPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKI 306 (360)
Q Consensus 227 ~~~~~~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i 306 (360)
.||+++.++.+.++.|+++|.|.++.+.+++||++|.|++++.|++++++++..++....+.......+.++.||++|.|
T Consensus 2 lPp~~i~~~~i~~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I 81 (135)
T d1yp2a1 2 LPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHI 81 (135)
T ss_dssp CCCEEEEEEEEEEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEE
T ss_pred CCCcccCCCEEEeCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEe
Confidence 58889988899999999999999888899999999999999999999999999998887777776555566999999999
Q ss_pred eeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 307 KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 307 ~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
.+++|+++|+||+++++.+...+.++.+++++++|..|.++||+++.|++|++|
T Consensus 82 ~~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~vI 135 (135)
T d1yp2a1 82 KRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 135 (135)
T ss_dssp ESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred ccceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcCC
Confidence 999999999999999999999999999999999999999999999999999987
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2.2e-21 Score=178.83 Aligned_cols=172 Identities=20% Similarity=0.282 Sum_probs=134.7
Q ss_pred CCCcEEEeeCcccCCC--------CC-----------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHH
Q 018109 4 LTGNSQVLAATQTPGE--------AG-----------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYM 64 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~--------~~-----------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~ 64 (360)
.+|+++|+++.++... .+ ++.++|||+||..+.+++++ ++.|||+++|++++.++.
T Consensus 44 ~~gi~~i~iv~~~~~~~~~~~~~~~g~~~gi~I~y~~Q~~plGta~Ai~~a~~fi~~-----~~~~lvlgddi~~~~~~~ 118 (291)
T d1mc3a_ 44 LAGIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNG-----EPSCLVLGDNIFFGQGFS 118 (291)
T ss_dssp HTTCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCSTHHHHHTHHHHTT-----SCEEEEETTEEEECSSCH
T ss_pred HcCCCEEEEEeCcccHHHHHHHhCchHhhCcEEEEEECCCCCchHHHHHHHHHHhCC-----CCeEEEECCCcccCcCHH
Confidence 4788998888876433 11 23368999999999999974 234566677778999999
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEE
Q 018109 65 DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 144 (360)
Q Consensus 65 ~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIy 144 (360)
.++++|.++.+.+|+++.++++ |++||++.+|++++|.+|.|||+.+. ++++++|+|
T Consensus 119 ~~l~~~~~~~~~atI~~~~V~d--P~~yGVve~d~~g~i~~i~EKP~~p~---------------------Sn~a~~GiY 175 (291)
T d1mc3a_ 119 PKLRHVAARTEGATVFGYQVMD--PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLY 175 (291)
T ss_dssp HHHHHHTTCCSSEEEEEEECSC--CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEE
T ss_pred HHHHHHHhCcCCcEEEEEECCC--cccCCCceeccCcceeEEEECCCCCC---------------------CCeEEEEEE
Confidence 9999999999999999999988 78999999998899999999998764 689999999
Q ss_pred EEeHHHHHHHHHhhCCCCc-ch-hhcccccccccCceEEEEeC--CceeecCCHHHHHHHHHHh
Q 018109 145 LFKKEILLNLLRWRFPTAN-DF-GSEIIPASANEQFLKAYLFN--DYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 145 ifs~~vl~~ll~~~~~~~~-~~-~~~~l~~~i~~~~I~~~~~~--g~w~digtp~~~~~a~~~~ 204 (360)
+|++++++.+ ++..+... .+ ..+++..++++..+..+.+. .+|+|+||+++|++|+..+
T Consensus 176 ~f~~~v~~~~-~~lk~s~rgE~EItdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v 238 (291)
T d1mc3a_ 176 FYDSKVVEYA-KQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFV 238 (291)
T ss_dssp ECCTHHHHHH-HSCCCCSSSSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred EeChHHHHHH-hcCCCCCCCceeehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 9999999764 55433321 11 12455555667776666653 4699999999999999755
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.71 E-value=1.7e-17 Score=150.69 Aligned_cols=148 Identities=12% Similarity=0.147 Sum_probs=114.0
Q ss_pred ccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec------------eEEE
Q 018109 213 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD------------TMML 276 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~------------~~~~ 276 (360)
++++++.|.+++.|++++.| +.+.|. ++.||++|.|+ ++.|. ++.+|+++.+.+++.+.. .+.+
T Consensus 7 ~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~v~I 86 (262)
T d2jf2a1 7 FVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEI 86 (262)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCCEEEE
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCceEEE
Confidence 34444444444444444444 233332 77888888888 66664 778888888888777653 5778
Q ss_pred CCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EEc
Q 018109 277 GADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VIL 349 (360)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig 349 (360)
|++...++ +++++++.+|...|.||+++.|. +++|+++|.||+++.+.++..+.++++|+++++|+.++. .||
T Consensus 87 G~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~IG 166 (262)
T d2jf2a1 87 GDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIG 166 (262)
T ss_dssp CSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccccEee
Confidence 87666666 88899888877779999999997 799999999999999999999999999999999998884 678
Q ss_pred CCcEeCCCccC
Q 018109 350 KNSVITDGFVI 360 (360)
Q Consensus 350 ~~~~i~~g~~i 360 (360)
++++|++||+|
T Consensus 167 ~~a~igagS~V 177 (262)
T d2jf2a1 167 AHVMVGGCSGV 177 (262)
T ss_dssp TTCEECSSCEE
T ss_pred hhceeeccceE
Confidence 99999998875
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.70 E-value=8e-17 Score=148.74 Aligned_cols=172 Identities=19% Similarity=0.239 Sum_probs=132.2
Q ss_pred CCCcEEEeeCcccCCC-------------------CCCccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHH
Q 018109 4 LTGNSQVLAATQTPGE-------------------AGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYM 64 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~-------------------~~~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~ 64 (360)
..|+++++++.++... ..++.++|||+||+.|..++++ ++.++++++|++++.++.
T Consensus 46 ~~g~~~i~Iv~~~~~~~~~~~~~~~~~~~~~~i~~v~e~~~~gta~Al~~a~~~l~~-----~~~~li~~~d~~~~~~~~ 120 (295)
T d1lvwa_ 46 LAGIRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGD-----SKVALVLGDNVFYGHRFS 120 (295)
T ss_dssp HTTCCEEEEEECTTTHHHHHHHHTTSGGGTSEEEEEECSSCCCGGGHHHHTHHHHTT-----SCEEEEETTCCEECTTHH
T ss_pred HCCCCeEEEEeCcccHHHHHHHhccchhcCCEEEEEECCCCCCHHHHHHHHHHHcCC-----CCEEEEeCCcceechhHH
Confidence 4688888888776432 1123458999999999999975 456888888889999999
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEE
Q 018109 65 DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 144 (360)
Q Consensus 65 ~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIy 144 (360)
.++..|.+.++.+|+++.+++. +++||++..+++++|.+|.|||..+. +.++++|+|
T Consensus 121 ~~~~~~~~~~~~~ti~~~~~~~--~~~yG~i~~~~~~~v~~~~EKp~~~~---------------------s~~~~~Giy 177 (295)
T d1lvwa_ 121 EILRRAASLEDGAVIFGYYVRD--PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLY 177 (295)
T ss_dssp HHHHHHHTCCSSEEEEEEECSC--CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEE
T ss_pred HHHHHHHhCCCCeEEEEEEcCC--CccccEEEECCCCcEEEEeecccCcc---------------------cceeecceE
Confidence 9999999999999999998877 67899999988899999999998643 568999999
Q ss_pred EEeHHHHHHHHHhhCCCCc--chhhcccccccccC--ceEEEEeCCceeecCCHHHHHHHHHHh
Q 018109 145 LFKKEILLNLLRWRFPTAN--DFGSEIIPASANEQ--FLKAYLFNDYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 145 ifs~~vl~~ll~~~~~~~~--~~~~~~l~~~i~~~--~I~~~~~~g~w~digtp~~~~~a~~~~ 204 (360)
+|++++|.. +++..+... ....+.++.++... .++.+....+|.|+|||++|.+++..+
T Consensus 178 ~~n~~if~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i 240 (295)
T d1lvwa_ 178 FYDNQVVEI-ARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFI 240 (295)
T ss_dssp EECTTHHHH-HHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHH
T ss_pred EECHHHHHH-HHhcCCCcCCCeeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHH
Confidence 999999964 444322211 11123444455544 445555678999999999999998765
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.67 E-value=1.2e-16 Score=144.83 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=118.6
Q ss_pred CCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEe------------ceEE
Q 018109 210 MFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK------------DTMM 275 (360)
Q Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~------------~~~~ 275 (360)
+++.+++++.++.++.|+|+|+|.+ ++.|+++|.|+ +++|. ++.||+++.|.+++.|+ ..++
T Consensus 5 ~sAiI~~~a~Ig~~V~IG~~~vIg~----~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ 80 (259)
T d1j2za_ 5 KTAIISPKAEINKGVEIGEFCVIGD----GVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELI 80 (259)
T ss_dssp TTCEECTTSEECTTCEECTTCEECT----TCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEE
T ss_pred CCCEECCCCEECCCCEECCCCEECC----CCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEE
Confidence 4566777777777777777777744 67788888888 77774 78899999999999885 3566
Q ss_pred ECCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EE
Q 018109 276 LGADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VI 348 (360)
Q Consensus 276 ~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~i 348 (360)
+|++...++ .++++.+..+...+.||+++.+. +++++++|.||.++.+.+...+.+++.|+|+++|+.+++ .|
T Consensus 81 ig~~~~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~I 160 (259)
T d1j2za_ 81 IGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRI 160 (259)
T ss_dssp ECSSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred eccccccccccccccccccccccccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecccEe
Confidence 777666666 66677766665669999999997 799999999999999999999999999999999998874 67
Q ss_pred cCCcEeCCCccC
Q 018109 349 LKNSVITDGFVI 360 (360)
Q Consensus 349 g~~~~i~~g~~i 360 (360)
|++|+||++|+|
T Consensus 161 G~~a~IgagSvV 172 (259)
T d1j2za_ 161 AKGCMIAGKSAL 172 (259)
T ss_dssp CTTCEECTTCEE
T ss_pred ccceeeeeeeee
Confidence 888888888865
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=5.8e-16 Score=140.99 Aligned_cols=158 Identities=21% Similarity=0.286 Sum_probs=108.8
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCH--HHHHHH---HHHcCCcEEEEEeecCCCCCCcccEEEECC
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY--MDFVQN---HRQSGADITISCLPMDDSRASDFGLMKINN 99 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl--~~ll~~---h~~~~a~~tll~~~~~~~~~~~~g~v~~d~ 99 (360)
.+|||+|+..+...+.+ ..++.|+|++||++++.|+ ...+.. +.++++.+++...+... +.+||++..++
T Consensus 81 ~~~t~~a~~~~~~~~~~---~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~yG~i~~~~ 155 (268)
T d2cu2a2 81 GRDTAGAVLLGVAEALK---EGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRP--ETEYGYIRLGP 155 (268)
T ss_dssp CCHHHHHHHHHHHHHHH---HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSC--CSSSCEEEEEE
T ss_pred cCCcccchhhHHHHHhc---cCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeecccccc--ccccceEEecc
Confidence 47999999988766532 1358999999999998885 344443 23455666776766655 67899998764
Q ss_pred CC----ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchh---------
Q 018109 100 EG----RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFG--------- 166 (360)
Q Consensus 100 ~g----~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~--------- 166 (360)
++ +|.+|.|||+...++. .....+++|+|+|+|++++|...+++..+...+..
T Consensus 156 ~~~~~~~v~~f~EKp~~~~~~~--------------~~~~~~~~N~Giy~f~~~~l~~~~~~~~p~i~~~~~~~~~~~~~ 221 (268)
T d2cu2a2 156 REGAWYRGEGFVEKPSYAEALE--------------YIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASL 221 (268)
T ss_dssp EETTEEEEEEEECCCCHHHHHH--------------HHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCH
T ss_pred ccccchhhheeecccchhhhhh--------------hhccCcccchhhhhcchHHHHHHHHhhhHHHHHHHHHHHhcchH
Confidence 32 7999999998654211 01124789999999999988766555433211111
Q ss_pred hccc---cc------ccc-cCceEEEEeCCceeecCCHHHHHHHH
Q 018109 167 SEII---PA------SAN-EQFLKAYLFNDYWEDIGTIRSFFEAN 201 (360)
Q Consensus 167 ~~~l---~~------~i~-~~~I~~~~~~g~w~digtp~~~~~a~ 201 (360)
++.+ +. .++ ..++.+++++++|.|+|||+++.+..
T Consensus 222 ~~~f~~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~ 266 (268)
T d2cu2a2 222 EEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (268)
T ss_dssp HHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred HHHHhhCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHHh
Confidence 1111 11 123 46899999999999999999998764
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=99.47 E-value=1.5e-13 Score=122.33 Aligned_cols=170 Identities=20% Similarity=0.292 Sum_probs=132.9
Q ss_pred CCCcEEEeeCcccCCCCCCcc---------------------------------------ccccHHHHHHHhHhhcCCCC
Q 018109 4 LTGNSQVLAATQTPGEAGKRW---------------------------------------FQGTADAVRQFHWLFEDPRN 44 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~~~~---------------------------------------~lGTa~al~~a~~~i~~~~~ 44 (360)
.+|+.+|+++.+|.++++.++ ++++++++..+.+.+..
T Consensus 45 ~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 121 (259)
T d1tzfa_ 45 VHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKD--- 121 (259)
T ss_dssp HTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTT---
T ss_pred HcCCCeeeeccchhHHHHHHHHhcchhccccccchhccccchhhhccccccceeEEeccccccccchhhhhhhhccC---
Confidence 478999999999876644322 46899999999988764
Q ss_pred CCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccc
Q 018109 45 KVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTV 124 (360)
Q Consensus 45 ~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~ 124 (360)
+++|+++++|.+++.++..+++.|.......+...... +++++.+... ..++..+.+.+...
T Consensus 122 --~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~i~~~~~~~~~~----------- 183 (259)
T d1tzfa_ 122 --DEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFP----PGRFGALDIQ-AGQVRSFQEKPKGD----------- 183 (259)
T ss_dssp --SSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEECC----CCCSEEEEEE-TTEEEEEEESCSCC-----------
T ss_pred --CCceEEeccccccccchhhhhhhhcccccceeeccccc----cccCCceecc-cceEEeeeeccccc-----------
Confidence 57899999999999999999999999988777665533 3456655543 45677776655432
Q ss_pred cccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHh
Q 018109 125 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 125 ~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~ 204 (360)
..+.++|+|+++++++..+ .+ ....+..++++.+++++++.+|+++++|.|||||++|..+++.+
T Consensus 184 -----------~~~~~~G~y~~~~~~~~~i-~~---~~~~~~~~~l~~l~~~~~v~~~~~~g~W~didt~~d~~~~~~~~ 248 (259)
T d1tzfa_ 184 -----------GAMINGGFFVLNPSVIDLI-DN---DATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLW 248 (259)
T ss_dssp -----------SCCEECCCEEECGGGGGGC-CS---TTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHH
T ss_pred -----------eeeecceeccccchhhhhc-cc---CcCccHHHHHHHHHhcCCeEEEEeCCEEEECCCHHHHHHHHHHH
Confidence 4678999999999988643 32 23345567899999989999999999999999999999999998
Q ss_pred hcCCC
Q 018109 205 TAHPP 209 (360)
Q Consensus 205 l~~~~ 209 (360)
....+
T Consensus 249 ~~~~~ 253 (259)
T d1tzfa_ 249 EKGKA 253 (259)
T ss_dssp HTTCC
T ss_pred HcCCC
Confidence 88654
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.36 E-value=3e-12 Score=111.79 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=79.9
Q ss_pred CCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-----eeEEecCeEECCCCEEec-----------------
Q 018109 216 ATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKD----------------- 272 (360)
Q Consensus 216 ~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-----~~~ig~~~~i~~~~~i~~----------------- 272 (360)
+...|++++.|.|.+.+.+ ++.||++|.|+ +++|+ ...||++|.|++++.|+.
T Consensus 21 ~~p~I~~~a~I~p~A~i~g----~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~ 96 (210)
T d1qrea_ 21 SAPVIDPTAYIDPQASVIG----EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVE 96 (210)
T ss_dssp CCCEECTTCEECTTCEEEE----SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEE
T ss_pred CCCccCCCCEECCCCEEec----ceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCcccc
Confidence 3344666666666665532 67778888887 66663 578999999999999853
Q ss_pred ------eEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCe
Q 018109 273 ------TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV 345 (360)
Q Consensus 273 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (360)
.+.+|++ +.||+++.|. +|.||++|.||+++++.++ .++++++|+.++.+ .|+
T Consensus 97 ~~~~~~~~~IG~~------------------v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~-~IG~~~vIg~~svv-~g~ 156 (210)
T d1qrea_ 97 VDGKEYAVYIGNN------------------VSLAHQSQVHGPAAVGDDTFIGMQAFVFKS-KVGNNCVLEPRSAA-IGV 156 (210)
T ss_dssp ETTEEESEEECTT------------------CEECTTCEEEEEEEECTTCEECTTCEEEEE-EECTTCEECTTCEE-ESC
T ss_pred ccccccceeeccc------------------cccccccccccCCcccCCcEeeCCcccccc-ccccCcEEecCcEe-cCc
Confidence 2445554 7788888875 6888889999988888764 23334444433332 122
Q ss_pred EEEcCCcEeCCCccC
Q 018109 346 TVILKNSVITDGFVI 360 (360)
Q Consensus 346 ~~ig~~~~i~~g~~i 360 (360)
+|++++.|++|+++
T Consensus 157 -~i~~g~~I~~g~~v 170 (210)
T d1qrea_ 157 -TIPDGRYIPAGMVV 170 (210)
T ss_dssp -EECTTBEECTTCEE
T ss_pred -EeCCCcEECCCcEE
Confidence 45677888877653
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.33 E-value=6.7e-12 Score=107.47 Aligned_cols=143 Identities=18% Similarity=0.254 Sum_probs=73.6
Q ss_pred CccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEeeeEE----------------ecCeEECCCCEEeceE
Q 018109 212 SFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVV----------------GIRSRINANVHLKDTM 274 (360)
Q Consensus 212 ~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~~~i----------------g~~~~i~~~~~i~~~~ 274 (360)
.++++++++++++.|+|++++.+ ++.||++|.|+ ++.|+++.| ++++.|++++.+...+
T Consensus 9 ~~I~~~v~Ig~~~~I~~~vvI~~----~v~IG~~~~I~~~~~i~~~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~~~~ 84 (196)
T d1g97a1 9 TYIDIDVEIASEVQIEANVTLKG----QTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVIVGPYAHIRPNS 84 (196)
T ss_dssp CEECTTCEECTTCEECTTCEEES----SCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSC
T ss_pred EEECCCcEECCCCEECCCCEECC----CcEECCCceEcCceEeeeeecccCccccccceeeccccCcceeecceeccccc
Confidence 35666777777776766666632 34444444444 333333334 4444444444444433
Q ss_pred EECCcccchh-HHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCC-cccccccCCceEEeCCeE-----E
Q 018109 275 MLGADFYETD-AEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEG-IQEADRSAEGFYIRSGVT-----V 347 (360)
Q Consensus 275 ~~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~-~~~~~~~~~~~~i~~~~~-----~ 347 (360)
.++.+-.... ..+.....+. .+.+++++.+.++.++.++.+++++....... ...+..++++++|+.++. +
T Consensus 85 ~i~~~~~i~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~gv~ 162 (196)
T d1g97a1 85 SLGAQVHIGNFVEVKGSSIGE--NTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVE 162 (196)
T ss_dssp EECTTCEEEEEEEEESCEECT--TCEEEEEEEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSCE
T ss_pred ccccceeecccccceeeecCc--ceEecceEEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEEcCCcE
Confidence 3333210000 0000000000 03344444445555666666666666554433 334557788888887764 6
Q ss_pred EcCCcEeCCCccC
Q 018109 348 ILKNSVITDGFVI 360 (360)
Q Consensus 348 ig~~~~i~~g~~i 360 (360)
||++++||||++|
T Consensus 163 IG~~s~IgagsvV 175 (196)
T d1g97a1 163 LGDNSLVGAGSTI 175 (196)
T ss_dssp ECTTCEECTTCEE
T ss_pred ECCCCEECCCCEE
Confidence 7888888888874
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.27 E-value=2.1e-11 Score=109.89 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=71.0
Q ss_pred cCCCCceeccCCCCCCceecCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHH-------
Q 018109 214 YDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE------- 286 (360)
Q Consensus 214 ~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~------- 286 (360)
+++++.|++++.|++.+.|.. ++.|+++|.|++ ++.||++|.|++++.|+..+.++++...-+..
T Consensus 2 i~~~~~I~p~a~I~~~~~Ig~----~v~Ig~~~~I~~----~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~ 73 (262)
T d2jf2a1 2 IDKSAFVHPTAIVEEGASIGA----NAHIGPFCIVGP----HVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQ 73 (262)
T ss_dssp BCTTCEECTTCEECTTCEECT----TCEECTTCEECT----TEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCC
T ss_pred cCCCCEECCCCEECCCCEECC----CCEECCCCEECC----CCEECCCCEEeCCEEEcCCccccccceeeeecccceeec
Confidence 456666666666666555533 566666666663 56777777777777777777776653221100
Q ss_pred -HHhhhhCCCcceEECCCCeEe-eeEecCC-------CEECCCcEEecCCCcccccccCCceEEeCCe-----EEEcCCc
Q 018109 287 -VASLLAEGRVPVGIGENTKIK-ECIIDKN-------ARIGKNVIIANSEGIQEADRSAEGFYIRSGV-----TVILKNS 352 (360)
Q Consensus 287 -~~~~~~~~~~~~~ig~~~~i~-~~~i~~~-------~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~ig~~~ 352 (360)
.+..... +.+.||+++.|+ +|.|..+ +.||+++.+.+.+.++.++.+|+++.+..++ ++||+++
T Consensus 74 ~~~~~~~~--~~v~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v 151 (262)
T d2jf2a1 74 DLKYAGEP--TRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFA 151 (262)
T ss_dssp CTTCCSCC--CEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTC
T ss_pred cccccccC--ceEEECCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceE
Confidence 0000000 115556655553 3333221 2344444444444444344444444443222 3667777
Q ss_pred EeCCCccC
Q 018109 353 VITDGFVI 360 (360)
Q Consensus 353 ~i~~g~~i 360 (360)
.||+++.|
T Consensus 152 ~ig~~~~i 159 (262)
T d2jf2a1 152 IIGGMTAV 159 (262)
T ss_dssp EECTTCEE
T ss_pred EeccCcee
Confidence 77777653
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.24 E-value=3.8e-11 Score=101.20 Aligned_cols=115 Identities=24% Similarity=0.360 Sum_probs=77.0
Q ss_pred CCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEece----EEECCcccchhH
Q 018109 215 DATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT----MMLGADFYETDA 285 (360)
Q Consensus 215 ~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~ 285 (360)
+..+++++++.|.+.+.+.+ ++.||++|.|+ ++.|. ...||+++.+++++.+..+ +.+|++
T Consensus 10 ~~~~~Ig~~~~I~~~a~I~~----~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~------ 79 (172)
T d1xhda_ 10 EKKPKIASSAFIADYVTITG----DVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDD------ 79 (172)
T ss_dssp TBCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTT------
T ss_pred CcCCEECCCcEECCCCEEeC----CEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeee------
Confidence 34455666666666665533 67888888887 66663 3688999999999888754 566664
Q ss_pred HHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCc
Q 018109 286 EVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 358 (360)
Q Consensus 286 ~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 358 (360)
+.+++++.+.++.|++++.||.++++.+. +.||++++|++++++ .++..|++++
T Consensus 80 ------------~~~~~~~~~~~~~i~~~~~ig~~~~i~~g------v~IG~~~~IgagsvV-~~~~~i~~~~ 133 (172)
T d1xhda_ 80 ------------VTVGHQVILHSCHIKKDALIGMGSIILDG------AEIGEGAFIGAGSLV-SQGKKIPPNT 133 (172)
T ss_dssp ------------CEECTTCEEESCEECTTCEECTTCEECTT------CEECTTCEECTTCEE-CTTCEECTTE
T ss_pred ------------eeeeeeecccccccccceEEecccEeeCC------cEEcCcccccceEEE-eeCeEECCCe
Confidence 67777777778888888888888887765 455555555555533 3444444444
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.24 E-value=1.9e-11 Score=107.59 Aligned_cols=181 Identities=17% Similarity=0.188 Sum_probs=131.2
Q ss_pred CCCcEEEeeCcccCCCCCCc------------cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCcee-eecCHHHHHHHH
Q 018109 4 LTGNSQVLAATQTPGEAGKR------------WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNH 70 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~~~------------~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i-~~~dl~~ll~~h 70 (360)
..|+.+++++.+|..+.... ...||++++..+...++.. .++.+++..+|.+ ...+++++++.|
T Consensus 41 ~~~~~~iivv~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~~~---~~~~~~i~~~~~~~~~~~l~~l~~~~ 117 (250)
T d1g97a2 41 AIQPEKTVTVVGHKAELVEEVLAGQTEFVTQSEQLGTGHAVMMTEPILEGL---SGHTLVIAGDTPLITGESLKNLIDFH 117 (250)
T ss_dssp GGCCSEEEEEECTTHHHHHHHTTTTSEEEECSSCCCHHHHHHTTHHHHTTC---CSEEEEEETTCTTCCHHHHHHHHHHH
T ss_pred HcCCCeEEEecccccchhhhhccccccccccccccccchHHHHHHHhhhcc---cCcceEEecCCCccCHHHHHHHHHHH
Confidence 46889999999996552221 2479999999999988742 2345566666654 455689999999
Q ss_pred HHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHH
Q 018109 71 RQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEI 150 (360)
Q Consensus 71 ~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~v 150 (360)
.+..+.++++..+... +..||.+..+.++.+..+.++++..... ....+..+|+|+|+...
T Consensus 118 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~~~g~y~f~~~~ 178 (250)
T d1g97a2 118 INHKNVATILTAETDN--PFGYGRIVRNDNAEVLRIVEQKDATDFE-----------------KQIKEINTGTYVFDNER 178 (250)
T ss_dssp HHTTCSEEEEEEECSC--CTTSCEEEECTTCCEEEEECGGGCCHHH-----------------HTCCEEEEEEEEEEHHH
T ss_pred hhhccccccccceecc--cCCCceEEEeeceEEEEeeccccccccc-----------------cccceeeeeeeecchHH
Confidence 9999999998888776 5678888887788999999887654310 02468899999999998
Q ss_pred HHHHHHhhCCC---Ccchhhcccccccc-cCceEEEEeCCceee--cCCHHHHHHHHHHhhc
Q 018109 151 LLNLLRWRFPT---ANDFGSEIIPASAN-EQFLKAYLFNDYWED--IGTIRSFFEANLALTA 206 (360)
Q Consensus 151 l~~ll~~~~~~---~~~~~~~~l~~~i~-~~~I~~~~~~g~w~d--igtp~~~~~a~~~~l~ 206 (360)
|...++..... ...+..+.++.+++ +.+|.+++++++|.+ ++||+++..|++.+.+
T Consensus 179 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~ 240 (250)
T d1g97a2 179 LFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRR 240 (250)
T ss_dssp HHHHHTTCCCCSTTCSCCGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcchhhHHHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHH
Confidence 87766543211 11122344444454 468999999999977 5699999888776654
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.20 E-value=5e-11 Score=107.15 Aligned_cols=52 Identities=17% Similarity=0.025 Sum_probs=28.6
Q ss_pred eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 308 ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 308 ~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
++.||+++.|++++.++....++.++.+..++.+... +.||+++.||.+++|
T Consensus 103 ~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~-v~Ig~~v~IG~~s~I 154 (259)
T d1j2za_ 103 KTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGH-IEIGDYVNIGGLTAI 154 (259)
T ss_dssp EEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECSSCEECTTCEE
T ss_pred cccccCceEEeccccccceecccceeeeecccccccc-ccccccceecceeee
Confidence 3556666666666666555444444444444444433 355777666666653
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.19 E-value=5.8e-11 Score=103.60 Aligned_cols=161 Identities=8% Similarity=0.027 Sum_probs=110.7
Q ss_pred CCCcEEEeeCcccCCCCCCc---------------cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHH
Q 018109 4 LTGNSQVLAATQTPGEAGKR---------------WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQ 68 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~~~---------------~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~ 68 (360)
..|+++|+++.+|.++++.. ..+||+++|+.|.++++ ++|++.++|++++..+.+.+
T Consensus 46 ~~g~~~i~iv~g~~~e~i~~~~~~~~i~i~~~~~~~~~Gt~~sl~~a~~~l~-------~~~ii~~dd~~~~~~~~~~~- 117 (229)
T d1jyka_ 46 EKGINDIIIIVGYLKEQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELA-------NSYVIDADNYLFKNMFRNDL- 117 (229)
T ss_dssp HTTCCCEEEEECTTGGGGTHHHHHHCCEEEECTTTTTSCTHHHHHTTGGGCT-------TEEEEETTEEESSCCCCSCC-
T ss_pred HhCCcccccccccchhhhhhhhhhccccccccccccccccccccccchhhhc-------ccccccccccccccchhhhh-
Confidence 46889999999998875532 23799999999998885 57888777777655443222
Q ss_pred HHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeH
Q 018109 69 NHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKK 148 (360)
Q Consensus 69 ~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~ 148 (360)
....++...+.+ +..++.+..+++++|..+.++|.. .+..+|+|.|++
T Consensus 118 ------~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~------------------------~~~~~gi~~~~~ 165 (229)
T d1jyka_ 118 ------TRSTYFSVYRED--CTNEWFLVYGDDYKVQDIIVDSKA------------------------GRILSGVSFWDA 165 (229)
T ss_dssp ------CSEEEEECEESS--CSSCCEEEECTTCBEEEEECCCSS------------------------EEBCCSEEEECH
T ss_pred ------hccccceeeeee--ccccceeEEccCCceeeEEEeccc------------------------ceEEEEEEEEcH
Confidence 122333333333 456888888889999999988752 456789999998
Q ss_pred HHHHHHHH---hhC--CCC-cchhhcccccccccCceEEEEeCC-ceeecCCHHHHHHHHHHh
Q 018109 149 EILLNLLR---WRF--PTA-NDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 149 ~vl~~ll~---~~~--~~~-~~~~~~~l~~~i~~~~I~~~~~~g-~w~digtp~~~~~a~~~~ 204 (360)
..+..+.+ +.. ... ..+.++.+...+.+.+++.+..++ .|++++||++|.+++..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 166 PTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp HHHHHHHHHHHHHHTTTCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 86654432 211 111 112233455566778899888865 599999999999997654
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=99.17 E-value=9.6e-11 Score=100.65 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=20.9
Q ss_pred ceeecCCHHHHHHHHHHhhcCC-CCCCccCCCCceeccCCC
Q 018109 187 YWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRN 226 (360)
Q Consensus 187 ~w~digtp~~~~~a~~~~l~~~-~~~~~~~~~~~v~~~~~~ 226 (360)
++.-+|++..-.+....+.... ....++++++.+..++.+
T Consensus 49 ~~iaIG~~~~R~~~~~~~~~~~~~~~~~I~p~a~I~~~~~I 89 (193)
T d3bswa1 49 FFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIV 89 (193)
T ss_dssp EEECCSCHHHHHHHHHHHHHTTCCBCCEECTTCEECTTSEE
T ss_pred EEEEECCcHHHHHHHHHhhhhccccceecCCCcEEeeeeEE
Confidence 3456888875445444444332 233455555555554444
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=99.16 E-value=4.7e-11 Score=105.67 Aligned_cols=100 Identities=17% Similarity=0.334 Sum_probs=73.3
Q ss_pred CCCCCCceecCceeeceEECCCCEEcceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECC
Q 018109 224 RRNLPPSKIDDSKIVDSIISHGSFITSSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGE 302 (360)
Q Consensus 224 ~~~~~~~~~~~~~i~~~~i~~~~~i~~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~ 302 (360)
.++.|++.+.. .++|++|+.++++.|. .+.||++|.|..++.|+.++.+|++ |.|+.
T Consensus 103 ~RvvPga~VR~----GayI~~~vVlmps~VNigA~ig~~~midt~a~vgs~aqIG~~------------------vhis~ 160 (274)
T d3tdta_ 103 FRVVPPATVRQ----GAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLSG 160 (274)
T ss_dssp CEECTTCEEBT----TCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTT------------------CEECT
T ss_pred EEeCCCceecc----CcEECCCcEEeeeEeccccEEcCCcEEcccceecceeEECCC------------------eEECC
Confidence 45666666533 6778888877777775 7788888888888888888788876 77777
Q ss_pred CCeEe---------eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCe
Q 018109 303 NTKIK---------ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV 345 (360)
Q Consensus 303 ~~~i~---------~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (360)
++.|. .++|+++|+||+++.+.++..+++..+++.|++|++.+
T Consensus 161 g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~~t 212 (274)
T d3tdta_ 161 GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQST 212 (274)
T ss_dssp TCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred CcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEeccc
Confidence 77773 45688888888888888876666666666666666654
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=5.8e-11 Score=86.69 Aligned_cols=62 Identities=19% Similarity=0.289 Sum_probs=33.8
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCE
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 316 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ 316 (360)
++.||++|.|+ ++.|. +++||++|.|+++|.|+++.+.. + +.|+++|.|.+|+||++|.
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~-~------------------~~I~~~s~i~~~~Ig~~~~ 74 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGD-D------------------CEISPYTVVEDANLAAACT 74 (78)
T ss_dssp EEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECT-T------------------CEECTTCEEESEEECTTCE
T ss_pred cEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECC-C------------------CEEcCCcEEECCEECCCCE
Confidence 44555555555 44443 45566666666666665543332 2 5666666665566666665
Q ss_pred ECC
Q 018109 317 IGK 319 (360)
Q Consensus 317 ig~ 319 (360)
||+
T Consensus 75 IGP 77 (78)
T d1fxja1 75 IGP 77 (78)
T ss_dssp ESC
T ss_pred ECc
Confidence 554
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.16 E-value=1.8e-10 Score=100.18 Aligned_cols=97 Identities=9% Similarity=0.099 Sum_probs=77.0
Q ss_pred CCccCCCCceeccCCCCCCcee-cCceee-----ceEECCCCEEc-ceEE------------------------eeeEEe
Q 018109 211 FSFYDATKPIYTSRRNLPPSKI-DDSKIV-----DSIISHGSFIT-SSFI------------------------EHSVVG 259 (360)
Q Consensus 211 ~~~~~~~~~v~~~~~~~~~~~~-~~~~i~-----~~~i~~~~~i~-~~~i------------------------~~~~ig 259 (360)
.+++++++.+..++.|+++|+| ..+.|+ ...||++|.|. ++.| ..+.||
T Consensus 28 ~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~IG 107 (210)
T d1qrea_ 28 TAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIG 107 (210)
T ss_dssp TCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEEC
T ss_pred CCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccceeec
Confidence 4567777766666667777777 556662 46777777776 5555 247899
Q ss_pred cCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEec
Q 018109 260 IRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 260 ~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~ 325 (360)
+++.|++++.|...+.+|++ +.||.++.|.++.||++|.|++++.+.+
T Consensus 108 ~~v~IG~~~~i~g~~~IGd~------------------~~IG~gs~i~~~~IG~~~vIg~~svv~g 155 (210)
T d1qrea_ 108 NNVSLAHQSQVHGPAAVGDD------------------TFIGMQAFVFKSKVGNNCVLEPRSAAIG 155 (210)
T ss_dssp TTCEECTTCEEEEEEEECTT------------------CEECTTCEEEEEEECTTCEECTTCEEES
T ss_pred cccccccccccccCCcccCC------------------cEeeCCccccccccccCcEEecCcEecC
Confidence 99999999999988899987 9999999999999999999999998865
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.08 E-value=5.9e-10 Score=93.67 Aligned_cols=102 Identities=22% Similarity=0.340 Sum_probs=78.0
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEece---EEECCcccchhHHHHhhhhCCCcceEECCCCeEe-----e
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----E 308 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-----~ 308 (360)
...||++|.|. ++.|. ++.||++|.|+++|.|... +.+|++ +.+++++.+. .
T Consensus 12 ~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~------------------~~i~~~~~~~~~~~~~ 73 (172)
T d1xhda_ 12 KPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDR------------------VNVQDQCTLHQSPQYP 73 (172)
T ss_dssp CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECCTTCC
T ss_pred CCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccce------------------eeeeeeceeccCCcCC
Confidence 34677777777 66664 7899999999999999753 677876 7888888774 2
Q ss_pred eEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 309 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
+++++++.++.++.+.+ ..+.++++++.++.|..++ +||++|.||+|++|
T Consensus 74 ~~ig~~~~~~~~~~~~~-~~i~~~~~ig~~~~i~~gv-~IG~~~~IgagsvV 123 (172)
T d1xhda_ 74 LILEDDVTVGHQVILHS-CHIKKDALIGMGSIILDGA-EIGEGAFIGAGSLV 123 (172)
T ss_dssp EEECTTCEECTTCEEES-CEECTTCEECTTCEECTTC-EECTTCEECTTCEE
T ss_pred eeeeeeeeeeeeecccc-cccccceEEecccEeeCCc-EEcCcccccceEEE
Confidence 67888888888887754 3566667777777777775 56999999999875
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=4.1e-10 Score=82.08 Aligned_cols=53 Identities=25% Similarity=0.420 Sum_probs=49.6
Q ss_pred eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEec
Q 018109 255 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~ 325 (360)
+..||+++.|++++.|+..+.+|++ |.||++|.|.+|.|+++++|++++.+.+
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~~IG~~------------------v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~ 66 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNVTLGHR------------------VKIGTGCVIKNSVIGDDCEISPYTVVED 66 (78)
T ss_dssp EEEECSSCEECTTEEEEEEEEECTT------------------CEECTTCEEESCEECTTCEECTTCEEES
T ss_pred cEEECCCCEECCccEEeCCcEECCC------------------CEECCCeEEecCEECCCCEEcCCcEEEC
Confidence 6789999999999999999999987 9999999999999999999999999854
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=5e-10 Score=96.14 Aligned_cols=63 Identities=21% Similarity=0.334 Sum_probs=44.5
Q ss_pred eEECCCCeEeeeEecCCCEECCCcEEecCCCccc-ccccCCceEEeCCe-----EEEcCCcEeCCCccC
Q 018109 298 VGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGV-----TVILKNSVITDGFVI 360 (360)
Q Consensus 298 ~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~-----~~ig~~~~i~~g~~i 360 (360)
+.+++.+.+.++.+++++.+++++...+...... +..|+|+++|+.++ ++||++|+||||++|
T Consensus 108 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV 176 (201)
T d2oi6a1 108 SKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTV 176 (201)
T ss_dssp CEEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEE
T ss_pred eEEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCCcEECCCCEECCCCEE
Confidence 3444444445677888888888888777654433 45777778777666 477899999998875
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.06 E-value=2.3e-10 Score=96.26 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=65.5
Q ss_pred CCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEece----EEECCcccchhH
Q 018109 215 DATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT----MMLGADFYETDA 285 (360)
Q Consensus 215 ~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~ 285 (360)
+.+..|++++.|.+.+++.+ ++.||++|.|+ ++.|. ..++++++.+.+++.+..+ +..+.+
T Consensus 8 g~~~~I~~~~~I~~~a~I~g----~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~------ 77 (173)
T d1v3wa_ 8 GKKPRIHPSAFVDENAVVIG----DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEY------ 77 (173)
T ss_dssp TBCCEECTTCEECTTSEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSS------
T ss_pred CCCCEECcCcEECCCCEEeC----ceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcc------
Confidence 34455666666666665533 67777777777 66663 4567888888888877632 233332
Q ss_pred HHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCcc
Q 018109 286 EVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 359 (360)
Q Consensus 286 ~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~ 359 (360)
+.+........+.||++|.||.++++... ++|+++++|+.++++ .+++.|+++++
T Consensus 78 ------------~~~~~~~~~~~~~Ig~~~~ig~~~~i~~g------v~Ig~~~vIgagsvV-~~~~~i~~~~i 132 (173)
T d1v3wa_ 78 ------------VTIGHNAMVHGAKVGNYVIIGISSVILDG------AKIGDHVIIGAGAVV-PPNKEIPDYSL 132 (173)
T ss_dssp ------------CEECTTCEEESCEECSSEEECTTCEECTT------CEECSSEEECTTCEE-CTTCEECTTEE
T ss_pred ------------eeeeeeeeeeeeecCCcccccceeeecCC------EEEcceeEEcCCcEE-eCCeEeCCCCE
Confidence 33444444445666666666666666553 344445555555432 44455555443
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=9e-10 Score=94.89 Aligned_cols=119 Identities=19% Similarity=0.166 Sum_probs=78.5
Q ss_pred ceeccCCCCCCceec-CceeeceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhC
Q 018109 219 PIYTSRRNLPPSKID-DSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAE 293 (360)
Q Consensus 219 ~v~~~~~~~~~~~~~-~~~i~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 293 (360)
.+++++.|+||+++. +. +..||++|.|+ +++|. ...||++|.|++++.|.......+.. .+. .....
T Consensus 56 ~iG~~~~I~p~~~i~~G~---nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~-~~~----~~~~~ 127 (200)
T d1krra_ 56 TVGENAWVEPPVYFSYGS---NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHE-LRK----NGEMY 127 (200)
T ss_dssp BCCSSCEECSCEEESCST---TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTT-TCT----TCCBE
T ss_pred cCCCCCEEcCCEEEecCC---ccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceec-ccc----cceee
Confidence 466778888888772 32 56788888888 77773 56899999999999998766655431 111 00001
Q ss_pred CCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 294 GRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 294 ~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
+ .++.||++|+|+ +|+|..+++||++|+|+..+.+.+. +.+++++.|..+++
T Consensus 128 ~-~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~kd--------vp~~~iv~G~PArv 180 (200)
T d1krra_ 128 S-FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKD--------IPPNVVAAGVPCRV 180 (200)
T ss_dssp E-CCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--------BCTTEEEETTTTEE
T ss_pred c-ceEEEccCcccceeeecccccccCCCcEEeCCCEEeeE--------cCCCcEEEEeCCEE
Confidence 1 127788888886 7777778888877777776655443 34555566665543
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=9.8e-10 Score=94.65 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=15.7
Q ss_pred eeEEecCeEECCCCEEe--ceEEECCc
Q 018109 255 HSVVGIRSRINANVHLK--DTMMLGAD 279 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~--~~~~~~~~ 279 (360)
+..||+++.|+++|.|. ..+.+|++
T Consensus 74 nv~IG~~~~I~~~~~I~~~~~i~IG~~ 100 (200)
T d1krra_ 74 NIHIGRNFYANFNLTIVDDYTVTIGDN 100 (200)
T ss_dssp TEEECSSCEECSCEEEECSSCEEECSS
T ss_pred ccEECCccEECceEEEecCCCcEeCCC
Confidence 45677777777777663 34555654
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.82 E-value=2.4e-09 Score=86.25 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=30.8
Q ss_pred cCCCCCCceecCceeeceEECCCCEEc-ceEEeeeEEecC
Q 018109 223 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIR 261 (360)
Q Consensus 223 ~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~ 261 (360)
++.|+++|.+.++.+.++.||++|.|+ ++.|+++++.++
T Consensus 14 ~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~ 53 (135)
T d1yp2a1 14 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGA 53 (135)
T ss_dssp EEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCC
T ss_pred eCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECC
Confidence 467888898877778899999999999 788876665544
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.77 E-value=3.1e-08 Score=82.83 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=23.5
Q ss_pred EECCCCEEc-ceEEe-eeEEecCeEECCCCEEec---eEEECCc
Q 018109 241 IISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD---TMMLGAD 279 (360)
Q Consensus 241 ~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~---~~~~~~~ 279 (360)
.|+++|.|. +++|. +++||++|.|++++.|.. .+.++++
T Consensus 12 ~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~ 55 (173)
T d1v3wa_ 12 RIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKY 55 (173)
T ss_dssp EECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTT
T ss_pred EECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccc
Confidence 455555555 44442 677777777777777763 4445543
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=1.3e-08 Score=86.20 Aligned_cols=102 Identities=21% Similarity=0.258 Sum_probs=62.8
Q ss_pred ceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecC
Q 018109 239 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK 313 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~ 313 (360)
+..||+++.|+ +++|. ...||++|.|++++.|....+.++. ........-+ .++.||++|+|+ +|+|.+
T Consensus 72 ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~-----~~~~~~~~~~-~~v~Ig~~~~iG~~~~I~~ 145 (182)
T d1ocxa_ 72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDP-----VARNSGAELG-KPVTIGNNVWIGGRAVINP 145 (182)
T ss_dssp TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSH-----HHHTTTCBEE-CCEEECTTCEECTTCEECT
T ss_pred ceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccce-----eeeeccceEc-ceeEECceEeeCceeeccC
Confidence 55667777766 55553 4589999999999999988877753 1111111111 126677777775 666666
Q ss_pred CCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 314 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
+++||++|+|+.++.+.+. +.+++++.|..+++
T Consensus 146 Gv~IG~~~vIgagsvV~kd--------vp~~~i~~G~PAk~ 178 (182)
T d1ocxa_ 146 GVTIGDNVVVASGAVVTKD--------VPDNVVVGGNPARI 178 (182)
T ss_dssp TCEECTTCEECTTCEECSC--------BCSSEEEETTTTEE
T ss_pred cEEECCCCEECCCCEEccC--------CCCCeEEEeeCCEE
Confidence 6666666666665544433 33455566665543
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.75 E-value=2.8e-08 Score=84.21 Aligned_cols=59 Identities=25% Similarity=0.341 Sum_probs=36.7
Q ss_pred ccCCCCceeccCCCCCCcee-cCceeeceEECCCCEEcceEE------eeeEEecCeEECCCCEEe
Q 018109 213 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFI------EHSVVGIRSRINANVHLK 271 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~~~~i------~~~~ig~~~~i~~~~~i~ 271 (360)
.+++.+.+...++|+++|.| ..+.|+++.||++|.|.+..+ .++.||+++.++.++.+.
T Consensus 22 ~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~~~~~i~ 87 (196)
T d1g97a1 22 QIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVIVGPYAHIRPNSSLG 87 (196)
T ss_dssp EECTTCEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEEC
T ss_pred EECCCCEECCCcEECCCceEcCceEeeeeecccCccccccceeeccccCcceeecceecccccccc
Confidence 34555555566666666777 556777888888888764332 246666666665555444
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.73 E-value=2.2e-08 Score=88.24 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=33.5
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEe-cCCCccc-ccccCCceEEeCCeE-----EEcCCcEeCCCccC
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIA-NSEGIQE-ADRSAEGFYIRSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~-~~~~~~~-~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~i 360 (360)
|.|..++.|+ .|.||++|+|+.|+.|+ ..+.++. +.+|+|+++||+++. +||+++.|++|++|
T Consensus 138 ~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i 208 (274)
T d3tdta_ 138 TMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYL 208 (274)
T ss_dssp CEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred cEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEE
Confidence 4444444444 34455555555555444 2222222 336777777777663 56777777777653
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.72 E-value=1.5e-09 Score=93.68 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=11.7
Q ss_pred eeEEecCeEECCCCEEe
Q 018109 255 HSVVGIRSRINANVHLK 271 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~ 271 (360)
++.||++|.|+++|.|.
T Consensus 60 ~v~IG~~~~Ig~gv~I~ 76 (203)
T d1mr7a_ 60 KLKIGKFCSIGPGVTII 76 (203)
T ss_dssp CEEECSSCEECTTCEEE
T ss_pred ccEECCCeEECCCCcEe
Confidence 46677777777777663
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=5.8e-09 Score=88.35 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=45.8
Q ss_pred eeEEecCeEECCCCEEec--eEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCccc
Q 018109 255 HSVVGIRSRINANVHLKD--TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQE 331 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~ 331 (360)
+..||+++.|+++|.|.+ .+.+|++ |.|+++|.|. .+++++.+....++.+.....+++
T Consensus 72 ni~IG~~~~I~~~~~I~d~~~I~IG~~------------------~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~ 133 (182)
T d1ocxa_ 72 NIFLGNNFFANFDCVMLDVCPIRIGDN------------------CMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGN 133 (182)
T ss_dssp TEEECSSEEECSSEEEECSSCEEECTT------------------CEECTTCEEECEECCSSHHHHTTTCBEECCEEECT
T ss_pred ceeECCccEECCCcEEecCCeEEECCC------------------eEECcCceEeecccccceeeeeccceEcceeEECc
Confidence 345555555555555533 3455554 6666666654 344444444444444443333333
Q ss_pred ccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 332 ADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 332 ~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
+++++.++.|.+|+ .||++|.|||||+|
T Consensus 134 ~~~iG~~~~I~~Gv-~IG~~~vIgagsvV 161 (182)
T d1ocxa_ 134 NVWIGGRAVINPGV-TIGDNVVVASGAVV 161 (182)
T ss_dssp TCEECTTCEECTTC-EECTTCEECTTCEE
T ss_pred eEeeCceeeccCcE-EECCCCEECCCCEE
Confidence 44444444454554 45777777777764
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.64 E-value=4.6e-08 Score=89.99 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=11.4
Q ss_pred ceEECCCCEEcceEEe-eeEEecCeEECCC
Q 018109 239 DSIISHGSFITSSFIE-HSVVGIRSRINAN 267 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~-~~~ig~~~~i~~~ 267 (360)
++.|+++|.|+++.|. ++.|++++.|+++
T Consensus 87 ~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~ 116 (320)
T d2f9ca1 87 NVRIGDNVWIDRADISDGARISDNVTIQSS 116 (320)
T ss_dssp SCEECSSCEESSCEECSSEEECSSCEEESC
T ss_pred CcEECCcEEECCcEEEcCcEEeeeeeecCc
Confidence 3444444444433331 3334444444333
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=9.6e-08 Score=83.37 Aligned_cols=177 Identities=16% Similarity=0.161 Sum_probs=110.1
Q ss_pred CCCcEEEeeCcccCCCCC-------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHH
Q 018109 4 LTGNSQVLAATQTPGEAG-------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNH 70 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~-------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h 70 (360)
..|+.+++++.++..+.. ++.++||+++++.+..++.. +.++++..+|..+... ..+-..+
T Consensus 42 ~~~~~~iiiv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~-----~~~~~i~~~d~~~~~~-~~~~~~~ 115 (248)
T d2oi6a2 42 ELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISV-ETLQRLR 115 (248)
T ss_dssp HHTCSCEEEEESSCHHHHHHHCCCTTEEEEECSSCCCHHHHHHHHGGGSCT-----TSEEEEEETTCTTCCH-HHHHHHH
T ss_pred HcCCcEEEeccCcccceeeeecccccccccccccCcccHHHHHhhhhhhcc-----ccceeeecCccccccc-hhHHHHH
Confidence 357788888888865421 23357999999999999875 5788888888864322 2222222
Q ss_pred -HHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH
Q 018109 71 -RQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 149 (360)
Q Consensus 71 -~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~ 149 (360)
.......+++.....+ +..++.+..+ ++....+.+++..... . ....+..++.|+|+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~---------------~--~~~~~~~~~~~~~~~~ 175 (248)
T d2oi6a2 116 DAKPQGGIGLLTVKLDD--PTGYGRITRE-NGKVTGIVEHKDATDE---------------Q--RQIQEINTGILIANGA 175 (248)
T ss_dssp HHCCTTSEEEEEEECSC--CTTSCEEEEE-TTEEEEEECGGGCCTT---------------G--GGCCEEEEEEEEEEHH
T ss_pred HHhhccccceeEEEecC--Cccccccccc-cCccceeeeccCCChh---------------h--hhhhhhhhhhhccchH
Confidence 2233445566666655 5667776654 4555555544322110 0 0245788999999998
Q ss_pred HHHHHHHhhCCC--Ccch-hhcccccccc-cCceEEEEeCCceee--cCCHHHHHHHHHHhhc
Q 018109 150 ILLNLLRWRFPT--ANDF-GSEIIPASAN-EQFLKAYLFNDYWED--IGTIRSFFEANLALTA 206 (360)
Q Consensus 150 vl~~ll~~~~~~--~~~~-~~~~l~~~i~-~~~I~~~~~~g~w~d--igtp~~~~~a~~~~l~ 206 (360)
.|.+.++..... ..++ ..+.+..+++ +.+|.++..+++|.. |+||+++..|++.+.+
T Consensus 176 ~l~~~l~~~~~~~~~~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~ 238 (248)
T d2oi6a2 176 DMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQS 238 (248)
T ss_dssp HHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHH
Confidence 887766543221 1111 1234444444 578899988888743 7799999999876643
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=4.9e-08 Score=83.25 Aligned_cols=13 Identities=8% Similarity=0.089 Sum_probs=6.6
Q ss_pred EEcCCcEeCCCcc
Q 018109 347 VILKNSVITDGFV 359 (360)
Q Consensus 347 ~ig~~~~i~~g~~ 359 (360)
+|++++.+|.+++
T Consensus 145 ~Ig~~v~iG~~~~ 157 (201)
T d2oi6a1 145 IIGDDVFVGSDTQ 157 (201)
T ss_dssp EECTTCEECTTCE
T ss_pred EeCCcEEEeEeee
Confidence 4455555555443
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.38 E-value=1.2e-07 Score=81.51 Aligned_cols=22 Identities=5% Similarity=0.114 Sum_probs=12.6
Q ss_pred eeEEecCeEECCCCEEeceEEE
Q 018109 255 HSVVGIRSRINANVHLKDTMML 276 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~~~~ 276 (360)
.++|++++.||.+|.|++.+.+
T Consensus 54 ~~~I~~~v~IG~~~~Ig~gv~I 75 (203)
T d1mr7a_ 54 YPILNDKLKIGKFCSIGPGVTI 75 (203)
T ss_dssp CGGGCCCEEECSSCEECTTCEE
T ss_pred eCEECCccEECCCeEECCCCcE
Confidence 3445556666666666655443
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.34 E-value=5.6e-07 Score=79.15 Aligned_cols=95 Identities=22% Similarity=0.202 Sum_probs=46.9
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEEC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 318 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig 318 (360)
+.||+++.|.+.. ..+||+.+.|+.++.|...+.++... ...|..+++||+|++|+ ++.|-.+++||
T Consensus 144 ~~Ig~g~~i~h~~--givig~~~~ig~~~~i~~~v~~~~~~----------~~~~~~~~~Ig~~v~IGaga~Ilg~v~IG 211 (241)
T d1ssqa_ 144 AKIGHGIMFDHAT--GIVVGETSVIENDVSILQGVTLGGTG----------KESGDRHPKVREGVMIGAGAKILGNIEVG 211 (241)
T ss_dssp CEECSSCEESSCT--TCEECTTCEECTTCEECTTCEEECCS----------SSCSSCSCEECTTCEECTTCEEESSCEEC
T ss_pred CEEccCcccCccc--eEEEeccceecCCeeecccccccccc----------cCCCCCCCccCCCeEECCCCEEcCCcEEC
Confidence 3444455554211 45666666666666666555555421 01111125555555554 45555555555
Q ss_pred CCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 319 KNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
++++|+.++.+.+. +.+++++.|-++++
T Consensus 212 ~~a~IgAgsvV~kd--------Vp~~~vv~G~PAr~ 239 (241)
T d1ssqa_ 212 KYAKIGANSVVLNP--------VPEYATAAGVPARI 239 (241)
T ss_dssp TTCEECTTCEECSC--------BCTTCEEETTTTEE
T ss_pred CCCEECCCCEECCC--------CCCCCEEEecCcEE
Confidence 55555544333332 34555666666654
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.30 E-value=7.2e-07 Score=78.47 Aligned_cols=12 Identities=25% Similarity=0.099 Sum_probs=5.9
Q ss_pred EcCCcEeCCCcc
Q 018109 348 ILKNSVITDGFV 359 (360)
Q Consensus 348 ig~~~~i~~g~~ 359 (360)
||+++.||||++
T Consensus 210 IG~~a~IgAgsv 221 (241)
T d1ssqa_ 210 VGKYAKIGANSV 221 (241)
T ss_dssp ECTTCEECTTCE
T ss_pred ECCCCEECCCCE
Confidence 344555555544
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.23 E-value=2.5e-06 Score=78.02 Aligned_cols=48 Identities=10% Similarity=0.254 Sum_probs=22.6
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCC-CcccccccCCceEEeCCe
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSE-GIQEADRSAEGFYIRSGV 345 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~-~~~~~~~~~~~~~i~~~~ 345 (360)
+.|++++.|. +|.|++++.||.++.+...+ .+.++.+|++++.|+.++
T Consensus 230 ~~Ig~~a~I~g~~~i~~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~~ 279 (320)
T d2f9ca1 230 SQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEI 279 (320)
T ss_dssp CEECSSCEEESSEEECTEEEECSSCEEESSSEEECSEEEECSSCEEESSE
T ss_pred cccCcceeeeeeccccCceEECCCeEEeCCeeEECCceEECCCcEEcccC
Confidence 3444444443 45555555555555554322 334444555555554443
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.22 E-value=3.9e-07 Score=78.44 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=10.4
Q ss_pred eeEEecCeEECCCCEE
Q 018109 255 HSVVGIRSRINANVHL 270 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i 270 (360)
+.+||++|.|++++.|
T Consensus 54 ~v~IG~~~~I~~g~~I 69 (208)
T d1xata_ 54 KLVIGSFCSIGSGAAF 69 (208)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred eeEECCCCEECCCCEE
Confidence 3566776766666665
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.11 E-value=4.8e-06 Score=71.36 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=20.7
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCCCccc
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQE 331 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~ 331 (360)
+.||++|.|+ +|.|.++++||++|+|+.++.+.+
T Consensus 109 v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtk 143 (208)
T d1xata_ 109 TLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTG 143 (208)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred EEEcCCeEECccccccCCeEeCCCCEEeCceEEee
Confidence 6666666665 566666666666666666554443
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=96.72 E-value=0.028 Score=47.51 Aligned_cols=166 Identities=12% Similarity=0.107 Sum_probs=95.4
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCcee-eec-CHHHHHHHHHHcCCcEEEEEeecCCCC---CCcccEEEECCC
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRM-DYMDFVQNHRQSGADITISCLPMDDSR---ASDFGLMKINNE 100 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i-~~~-dl~~ll~~h~~~~a~~tll~~~~~~~~---~~~~g~v~~d~~ 100 (360)
.||......+...... ..+.++.+.||.. .+. ++..+++.+.....+......+..... ....--+..+.+
T Consensus 73 ~~~~~~~~~~~~~~~~----~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~~~ 148 (246)
T d1vh1a_ 73 SGTERLAEVVEKCAFS----DDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAE 148 (246)
T ss_dssp -CHHHHHHHHHHTTCC----TTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCCHHHHTCTTSCEEEECTT
T ss_pred ccchHHHHHHHhhccc----ccceeeeeccccccchhhHHHHHhhhhcccccccccccccccchhcccCCCcceeeeccc
Confidence 3666555544443322 2467888999994 333 468888888888877766666554321 011122455778
Q ss_pred CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhh--cccccccccCc
Q 018109 101 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS--EIIPASANEQF 178 (360)
Q Consensus 101 g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~--~~l~~~i~~~~ 178 (360)
|++..|...+........... ........+...|+|+|+++.|... ....+......+ +.++-+-.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~giy~~~~~~l~~~-~~~~~s~~E~~e~le~lR~i~~g~~ 219 (246)
T d1vh1a_ 149 GYALYFSRATIPWDRDRFAEG--------LETVGDNFLRHLGIYGYRAGFIRRY-VNWQPSPLEHIEMLEQLRVLWYGEK 219 (246)
T ss_dssp SBEEEEESSCSSCCHHHHSSC--------CCCCCSCCEEEEEEEEEEHHHHHHH-HHSCCCHHHHHHTCTTHHHHHTTCC
T ss_pred Ccccccccccchhhhhhhhhh--------hhccchhhheecceeeechhhhhhh-ccCCCChHHHHHhHHHHHHHHCCCc
Confidence 888888766543221000000 0001124567899999999998765 332221111111 12222223678
Q ss_pred eEEEEeCC-ceeecCCHHHHHHHHHHh
Q 018109 179 LKAYLFND-YWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 179 I~~~~~~g-~w~digtp~~~~~a~~~~ 204 (360)
+..+..+. ...||+||+||..|...|
T Consensus 220 i~~~~~~~~~~~~IDt~~Dl~~a~k~m 246 (246)
T d1vh1a_ 220 IHVAVAQEVPGTGVDTPEDLERVRAEM 246 (246)
T ss_dssp EEEEECSSCCCCCCCSHHHHHHHHHHC
T ss_pred eEEEEecCCCCCCCCCHHHHHHHHhcC
Confidence 88888764 468999999999887643
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=96.58 E-value=0.02 Score=48.42 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=92.2
Q ss_pred ccHHHHHHHhHhhcCCCCCCCCeEEEEcCcee-eec-CHHHHHHHHHHcCCcEEEEEeecCC--CCCC-cccEEEECCCC
Q 018109 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRM-DYMDFVQNHRQSGADITISCLPMDD--SRAS-DFGLMKINNEG 101 (360)
Q Consensus 27 GTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i-~~~-dl~~ll~~h~~~~a~~tll~~~~~~--~~~~-~~g~v~~d~~g 101 (360)
.+.+....+..+++ .+.++.+.+|.. .+. .+..+++.+................ +... ..........+
T Consensus 75 ~~~~~~~~~~~~~~------~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~~~~ 148 (245)
T d1h7ea_ 75 SGTDRLVEVMHKVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQ 148 (245)
T ss_dssp SHHHHHHHHHHHSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEEECTTC
T ss_pred cccHHHHHHHHhcC------CCEEEEecchhhhcccccchhhhhcccccccccccccccccccccccCCcceeeccchhh
Confidence 45666777777776 378888999994 343 3678888887766543333222211 0011 12223344456
Q ss_pred ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhh--ccccccc-ccCc
Q 018109 102 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS--EIIPASA-NEQF 178 (360)
Q Consensus 102 ~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~--~~l~~~i-~~~~ 178 (360)
.+..+...+...... . .....+...|+|+|+++.|..+. ...+......+ +.++ ++ .+.+
T Consensus 149 ~~~~~~~~~~~~~~~-------------~--~~~~~~~~~g~~~~~~~~l~~~~-~~~~s~~e~~e~ie~lr-~l~ng~~ 211 (245)
T d1h7ea_ 149 DALYFSRSPIPYPRN-------------A--EKARYLKHVGIYAYRRDVLQNYS-QLPESMPEQAESLEQLR-LMNAGIN 211 (245)
T ss_dssp BEEEEESSCSSCCTT-------------G--GGCCEEEEEEEEEEEHHHHHHGG-GSCCCHHHHHHTCTTHH-HHHTTCC
T ss_pred hhhhhhhhhhhhhhc-------------c--cccccceeeeeEEeeeccccccc-cccCChhhhhhhHHHHH-HHHCCCe
Confidence 667766655432210 0 01245778899999999887653 22222111111 1222 23 3688
Q ss_pred eEEEEeCCceeecCCHHHHHHHHHHhhc
Q 018109 179 LKAYLFNDYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 179 I~~~~~~g~w~digtp~~~~~a~~~~l~ 206 (360)
|..+..+..+.+|+|++||..|...+.+
T Consensus 212 I~~~~~~~~~~~IDt~~Dl~~a~~il~~ 239 (245)
T d1h7ea_ 212 IRTFEVAATGPGVDTPACLEKVRALMAQ 239 (245)
T ss_dssp EEEEECCCCCCCSSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHh
Confidence 9999888889999999999999766543
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=96.45 E-value=0.054 Score=45.76 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=97.0
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeec-CHHHHHHHHHHcCCcEEEEEeecCCCC---CCcccEEEECCC
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISCLPMDDSR---ASDFGLMKINNE 100 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~-dl~~ll~~h~~~~a~~tll~~~~~~~~---~~~~g~v~~d~~ 100 (360)
.||..+...+...... ..+.++++.||. +.+. ++..+++.+.......+.......... ...+.....++.
T Consensus 73 ~~~~~~~~~~~~~~~~----~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 148 (255)
T d1vica_ 73 SGTERLAEVVEKLAIP----DNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKD 148 (255)
T ss_dssp CHHHHHHHHHHHTTCC----TTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTT
T ss_pred CcchhhHHHHHHhhcc----CCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeeccchhhccCccceeeeeccC
Confidence 4666666655544432 246788889999 3443 368889988888877766665543310 112223446677
Q ss_pred CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhh--cccccccccCc
Q 018109 101 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS--EIIPASANEQF 178 (360)
Q Consensus 101 g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~--~~l~~~i~~~~ 178 (360)
+++..+...+....... .. ..............+...|+|+|+++.|.... ...+......+ +.++.+-.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~~le~~e~le~lr~l~ng~~ 223 (255)
T d1vica_ 149 GYVLYFSRSVIPYDRDQ-FM---NLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYV-QWAPTQLENLEKLEQLRVLYNGER 223 (255)
T ss_dssp SBEEEEESSCSSCCHHH-HT---TCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHH-HSCCCHHHHHHTCTTHHHHHTTCC
T ss_pred Ccccccccccccccchh-hh---hccchhhcccccchheeeeeecccHHHHhhhh-ccCCChhHHHHhHHHHHHHHCCCc
Confidence 88888877664322100 00 00000000111235667899999999887653 22221111111 11222224678
Q ss_pred eEEEEeCC-ceeecCCHHHHHHHHHHhh
Q 018109 179 LKAYLFND-YWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 179 I~~~~~~g-~w~digtp~~~~~a~~~~l 205 (360)
|..+..+. .+.||+|++|+..|...+.
T Consensus 224 I~~~~~~~~~~idIDt~eDl~~ae~ilk 251 (255)
T d1vica_ 224 IHVELAKEVPAVGVDTAEDLEKVRAILA 251 (255)
T ss_dssp EEEEECSSCCCCCCCSHHHHHHHHHHHH
T ss_pred eeEEEeCCCCCcCCCCHHHHHHHHHHHH
Confidence 88777653 5789999999999976654
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.17 Score=41.62 Aligned_cols=159 Identities=13% Similarity=0.020 Sum_probs=85.6
Q ss_pred CCcEEEeeCcccCCCCCCcc-------------ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHH
Q 018109 5 TGNSQVLAATQTPGEAGKRW-------------FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQN 69 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~~~~-------------~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~ 69 (360)
.++++++++.++........ ..++.++++++..++.+ .+.+++..+|. +...+ +..++..
T Consensus 45 ~~i~~Iivv~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~sv~~~~~~~~~-----~~~vl~~~~~~p~i~~~~~~~~~~~ 119 (225)
T d1i52a_ 45 PRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGD-----AQWVLVHDAARPCLHQDDLARLLAL 119 (225)
T ss_dssp TTEEEEEEEECTTCCSGGGSGGGGCTTEEEEECCSSHHHHHHHHHHTSTT-----CSEEEECCTTCTTCCHHHHHHHHGG
T ss_pred ccccccccccchhhhhhhhhhhccccccccccCCcchhHHHHhhhcccCc-----cceeeeeccCCCCCCHHHHHHHHhh
Confidence 46778888877644432221 13677899999988875 46777777886 44333 5666665
Q ss_pred HHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH
Q 018109 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 149 (360)
Q Consensus 70 h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~ 149 (360)
...... ..+...+..+ +..+ ....++......++.. .+...+.+.|..+
T Consensus 120 ~~~~~~-~~v~~~~~~d--~~~~---~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~f~~~ 168 (225)
T d1i52a_ 120 SETSRT-GGILAAPVRD--TMKR---AEPGKNAIAHTVDRNG-------------------------LWHALTPQFFPRE 168 (225)
T ss_dssp GGTCSS-CEEEEEECCS--CEEE---ECTTSSSEEEEECCTT-------------------------CEEEEEEEEEEHH
T ss_pred hhhccc-ccccccceee--ccch---hcccccccccccchHH-------------------------HHHHhhhhhhhhH
Confidence 554443 3444444443 1111 1122333333322211 1233456778877
Q ss_pred HHHHHHHhhCCCCcchhhcccccc---c--ccCceEEEEeCCceeecCCHHHHHHHHHHh
Q 018109 150 ILLNLLRWRFPTANDFGSEIIPAS---A--NEQFLKAYLFNDYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 150 vl~~ll~~~~~~~~~~~~~~l~~~---i--~~~~I~~~~~~g~w~digtp~~~~~a~~~~ 204 (360)
.+...+++..... ..+++. + .+.++..+.-+-.-+.|+||+|+..|+..+
T Consensus 169 ~l~~~~~~~~~~~-----~~~tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~l 223 (225)
T d1i52a_ 169 LLHDCLTRALNEG-----ATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYL 223 (225)
T ss_dssp HHHHHHHHHHHTT-----CCCCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-----CCCCcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHHh
Confidence 7766655432111 123332 1 256676666432336699999998886543
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=93.06 E-value=0.7 Score=38.02 Aligned_cols=135 Identities=13% Similarity=0.022 Sum_probs=74.6
Q ss_pred cHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEE
Q 018109 28 TADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 105 (360)
Q Consensus 28 Ta~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~ 105 (360)
++++++++...++. ..+.+++..||. +.+.+ +..+++.+.+.++. +...+..+. ..+ ...++....
T Consensus 83 r~~sv~~~l~~~~~----~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~--i~~~~~~d~--~~~----~~~~~~~~~ 150 (226)
T d1w77a1 83 RQDSVYSGLQEIDV----NSELVCIHDSARPLVNTEDVEKVLKDGSAVGAA--VLGVPAKAT--IKE----VNSDSLVVK 150 (226)
T ss_dssp HHHHHHHHHHTSCT----TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEE--EEEEECCSC--CCC----BCTTSCBC-
T ss_pred hhhhhhhhHhhhcc----ccccceecccccccccHHHhhhhhhhhhccCce--eeccccccc--eEE----EccCCceee
Confidence 46788888887763 246788888998 54544 68888888777653 333333321 111 112333222
Q ss_pred EEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccc---cc--ccCceE
Q 018109 106 FSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPA---SA--NEQFLK 180 (360)
Q Consensus 106 ~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~---~i--~~~~I~ 180 (360)
..+.. ..+...+-++|+.+.|...++....... .+++ ++ .+.++.
T Consensus 151 ~~~r~-------------------------~~~~~~~p~~f~~~~l~~~~~~~~~~~~-----~~TD~~~l~~~~g~~v~ 200 (226)
T d1w77a1 151 TLDRK-------------------------TLWEMQTPQVIKPELLKKGFELVKSEGL-----EVTDDVSIVEYLKHPVY 200 (226)
T ss_dssp ------------------------------CCEEEEEEEEECHHHHHHHHHHHHHSCC-----CCCC-CCTTGGGSSCCE
T ss_pred cccch-------------------------hhhHHHHHHhHhhHHHHHHHHHHHhcCC-----CcCcHHHHHHHCCCceE
Confidence 11111 1244456788998877766544311111 1222 12 266776
Q ss_pred EEEeCCceeecCCHHHHHHHHHHh
Q 018109 181 AYLFNDYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 181 ~~~~~g~w~digtp~~~~~a~~~~ 204 (360)
.++-+..-+.|.||+|+..|...+
T Consensus 201 ~v~g~~~n~KItt~eDl~~ae~lL 224 (226)
T d1w77a1 201 VSQGSYTNIKVTTPDDLLLAERIL 224 (226)
T ss_dssp EEECCTTCCCCCSHHHHHHHHHHH
T ss_pred EEECChhhcCcCCHHHHHHHHHHh
Confidence 665433345699999999997654
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.27 E-value=0.19 Score=45.62 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=74.4
Q ss_pred ccccHHHHHHHhH--hhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEE-ECCCC
Q 018109 25 FQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMK-INNEG 101 (360)
Q Consensus 25 ~lGTa~al~~a~~--~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~-~d~~g 101 (360)
|-|.|+....... .++.+....-+.+.+.+.|.+..+.--.++.+|.++++++++-+.+...+. .+-|.+. .|..-
T Consensus 184 P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~~lG~~~~~~~~~~~kvv~Kt~~d-ek~G~l~~~dg~~ 262 (378)
T d2icya2 184 PPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTLAD-VKGGTLISYEGKV 262 (378)
T ss_dssp CCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHHHHHHHHTCSEEEEEEECCTTC-CSSCEEEEETTEE
T ss_pred cCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchHHHHHHHhcCCcceeEEEecCCCC-CceeEEEEECCce
Confidence 6688886665332 111111123589999999998765556789999999999998877665432 2345544 33223
Q ss_pred ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhh
Q 018109 102 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 158 (360)
Q Consensus 102 ~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~ 158 (360)
+|+++.+.|....... .+ ...-.+.+++.++|+-+.+.++++..
T Consensus 263 ~vvEyse~p~e~~~~~-----------~~--~~~~~~~N~nn~~~~l~~l~~~~~~~ 306 (378)
T d2icya2 263 QLLEIAQVPDEHVNEF-----------KS--IEKFKIFNTNNLWVNLKAIKKLVEAD 306 (378)
T ss_dssp EEECGGGSCGGGHHHH-----------HS--SSSCCEEEEEEEEEEHHHHHHHHHTT
T ss_pred eeeehhcCChhHHhhh-----------cC--CcCcceeeeeeeeeeHHHHHHHHhhc
Confidence 5666666665422100 00 00123579999999999999887653
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=91.31 E-value=0.6 Score=37.86 Aligned_cols=140 Identities=13% Similarity=0.055 Sum_probs=82.2
Q ss_pred ccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 27 GTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
++...++.+...+.. ..+.++++.||. +.+.. +..+++.+.+.+.+..+...+... ..+..+...+++.+.
T Consensus 81 ~~~~~~~~~~~~~~~----~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~ 153 (225)
T d1eyra_ 81 SSISGVIHALETIGS----NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEH---HPLKTLLQINNGEYA 153 (225)
T ss_dssp CHHHHHHHHHHHHTC----CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSS---CTTSCEEECSSSCEE
T ss_pred cchhhcccccccccc----ccceEEEeeccccccccccccccceeeccccccccceeecccc---ccccccccccccccc
Confidence 455667777666653 257899999999 55554 788998888888776666555543 122223333456555
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEe
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF 184 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~ 184 (360)
.+........ ..+.....+..+.++|+++++.|... .. .-+.++..+.+
T Consensus 154 ~~~~~~~~~~--------------~~~~~~~~y~~~g~iy~~~~~~l~~~--~~---------------~~~~~~~~~~i 202 (225)
T d1eyra_ 154 PMRHLSDLEQ--------------PRQQLPQAFRPNGAIYINDTASLIAN--NC---------------FFIAPTKLYIM 202 (225)
T ss_dssp ESSCGGGGTS--------------CGGGSCCEEEEEEEEEEEEHHHHHHH--TS---------------SCCSSCEEEEC
T ss_pred cccccccccc--------------ccccCcceeeecceeEEeeHHHHHHc--CC---------------ccCCCeEEEEc
Confidence 4432221111 00001123567889999999977532 10 01234455555
Q ss_pred C-CceeecCCHHHHHHHHHHh
Q 018109 185 N-DYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 185 ~-g~w~digtp~~~~~a~~~~ 204 (360)
+ -..+||+|++++..|...+
T Consensus 203 ~~~~~~dIdt~eDl~~ae~i~ 223 (225)
T d1eyra_ 203 SHQDSIDIDTELDLQQAENIL 223 (225)
T ss_dssp CTTTTCCCCSHHHHHHHHHHH
T ss_pred CccceECCCCHHHHHHHHHHh
Confidence 3 3458999999999886543
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=89.13 E-value=2.8 Score=33.96 Aligned_cols=121 Identities=9% Similarity=0.082 Sum_probs=65.2
Q ss_pred CCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccc
Q 018109 47 IEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTV 124 (360)
Q Consensus 47 ~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~ 124 (360)
.+.+++..||. +...+ +..+++.+...+...++ ..+..+ ..... +++.+....+++...
T Consensus 101 ~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~-~~~~~~------~~~~~-~~~~i~~~~~r~~~~----------- 161 (226)
T d1vgwa_ 101 TDNILVHDAARCCLPSEALARLIEQAGNAAEGGIL-AVPVAD------TLKRA-ESGQISATVDRSGLW----------- 161 (226)
T ss_dssp TSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEE-EEECCS------CEEEE-SSSBEEEEECCTTEE-----------
T ss_pred ccceeecccccccCcHHHHHHHHhhhcccccceee-cccccc------cceec-cCCeEEeccchHHHH-----------
Confidence 46788888886 55444 78899888877765433 333322 22333 467777665543321
Q ss_pred cccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccc-cccCceEEEEeCCceeecCCHHHHHHHHHH
Q 018109 125 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPAS-ANEQFLKAYLFNDYWEDIGTIRSFFEANLA 203 (360)
Q Consensus 125 ~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~-i~~~~I~~~~~~g~w~digtp~~~~~a~~~ 203 (360)
....-..|..+.|...+.... ...+ .|...-+ ..+.++..+.-+...+.|.||+|+..|...
T Consensus 162 --------------~~~~p~~f~~~~l~~~~~~~~--~~~~-tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~l 224 (226)
T d1vgwa_ 162 --------------QAQTPQLFQAGLLHRALAAEN--LGGI-TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLL 224 (226)
T ss_dssp --------------EEEEEEEEEHHHHHHHHHC------CC-CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred --------------HHHhhhcccHHHHHHHHHHhh--cCCC-CcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHHH
Confidence 111234666666655543321 1111 0101101 126677766655455789999999888643
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=82.96 E-value=0.58 Score=38.53 Aligned_cols=71 Identities=17% Similarity=0.103 Sum_probs=49.0
Q ss_pred CCCcEEEeeCcccCCCCC----CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcE
Q 018109 4 LTGNSQVLAATQTPGEAG----KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADI 77 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~----~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~ 77 (360)
..|..+++++.++..+.. .....|+.++++.+..+++ +.++++.||. +.+.+ ++.+++.+.+ .++
T Consensus 44 ~~~~~~vvv~~~~~~~~~~~~~~~~~~~~~~~v~~al~~~~-------~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~ 114 (231)
T d2dpwa1 44 AAGLSPVYVGENPGLVPAPALTLPDRGGLLENLEQALEHVE-------GRVLVATGDIPHLTEEAVRFVLDKAPE--AAL 114 (231)
T ss_dssp HTTCEEEEESCCSSCSSCCSEEECCCSSHHHHHHHHHHTCC-------SEEEEEETTCTTCCHHHHHHHHHHCCS--CSE
T ss_pred hcCCCeEEeeeeccccceeeeecccchHHHHHHHHHHHhhc-------CceEEeeCCCccCCHHHHHHHHHHhhh--cCc
Confidence 357788888888755432 1234699999999998875 6899999998 55544 6888876544 334
Q ss_pred EEEEee
Q 018109 78 TISCLP 83 (360)
Q Consensus 78 tll~~~ 83 (360)
++...+
T Consensus 115 ~~~~~~ 120 (231)
T d2dpwa1 115 VYPIVP 120 (231)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 444433
|