Citrus Sinensis ID: 018113

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTIPGSTFQCEKWRHLIFRLSPASWLLYL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHEccccccccHHHHHHHHHEccHcHHHHHc
Coil and Loop (DISEMBL)
MEMFFYLVFGALGAVVAALELSktnkdrintssafnsFKNNYLLVYSLMMAGDWLQGPYVYYLYStygfgkgeiGQLFiagfgssmlFGTIVGSladkqgrkRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLlvdsfslgpvapfdaAACFLAIGMVIILSswtenygdpseskdLLTQFRGAAVAIASDEKIALLGAIQSLfegsmytfvflwtpalspndeeiphgfIFATFMLASMLGSSLASRlmarspprveSYMQIVFVVSSVSLllpivtipgstfqcekWRHLIFrlspaswllyl
Flexible Loop (DISEMBL)
MEMFFYLVFGALGAVVAALELSKTnkdrintssafnsfKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTIPGSTFQCEKWRHLIFRLSPASWLLYL
Low Complexity Region (SEG)
MEMFFYLVFgalgavvaalELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFmlasmlgsslasrlmarsPPRVESYMQIVFvvssvslllPIVTIPGSTFQCEKWRHLIFRLSPASWLLYL
Disordered region (IsUnstruct)
**MFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP**SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMA***PRVESYMQIVFVVSSVSLLLPIVTIPGSTFQCEKWRHLIFRLSPASWLLY*
Disordered Region (DISOPRED)
MEMFFYLVFGALGAVVAALELS************FNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSS*********************AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTIPGSTFQCEKWRHLIFRLSPASWLLYL
Disordered Region (DISEMBL)
MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTIPGSTFQCEKWRHLIFRLSPASWLLYL
Disordered Region (DISPRO)
MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTIPGSTFQCEKWRHLIFRLSPASWLLYL
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTIPGSTFQCEKWRHLIFRLSPASWLLYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
Q921Y4	450	Major facilitator superfa	yes	no	0.802	0.642	0.428	2e-55
Q6N075	450	Major facilitator superfa	yes	no	0.802	0.642	0.428	5e-54
Q0VC03	450	Major facilitator superfa	yes	no	0.802	0.642	0.424	8e-54
Q5R542	450	Major facilitator superfa	yes	no	0.802	0.642	0.421	7e-53
Q1KKV8	480	Major facilitator superfa	N/A	no	0.811	0.608	0.380	9e-52
Q6DG19	481	Major facilitator superfa	yes	no	0.841	0.629	0.367	4e-50
Q08B29	451	Major facilitator superfa	N/A	no	0.730	0.583	0.388	6e-46
Q28E13	452	Major facilitator superfa	yes	no	0.802	0.639	0.372	1e-42

>sp|Q921Y4|MFSD5_MOUSE Major facilitator superfamily domain-containing protein 5 OS=Mus musculus GN=Mfsd5 PE=2 SV=1

 Score =  216 bits (549), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/299 (42%), Positives = 181/299 (60%), Gaps = 10/299 (3%)

Query: 6   YLVFGALGAVVAALELSKTNKD---RINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
           YL F  L A    LELS+       R  ++ +F  F+ ++  VY L +A DWLQ PY+Y 
Sbjct: 6   YLSFVGLLASCLGLELSRCRARPPGRACSNPSFLQFQLDFYQVYFLALAADWLQAPYLYK 65

Query: 63  LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
           LY  Y F +G+I  L++ G  S++LFG +  SL D  GRK++CV + LTY L CITK S 
Sbjct: 66  LYQHYHFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKKSCVLFSLTYSLCCITKLSQ 125

Query: 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
            Y +L++GR LGG++T+LLFSAFE+W + EH +R  F  +W+  TF++A F  N ++A+ 
Sbjct: 126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFW-NHVLAVA 184

Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
           +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G   
Sbjct: 185 AGVAAEAVASWIGLGPVAPFVAAIPLLALTGALALRNWGENY---DRQRAFSKTCAGGLR 241

Query: 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
            + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G +F++FM AS+LGSSL
Sbjct: 242 CLLSDRRVLLLGVIQALFESVIFIFVFLWTPVLDPHGA--PLGIVFSSFMAASLLGSSL 298

Mus musculus (taxid: 10090)

>sp|Q6N075|MFSD5_HUMAN Major facilitator superfamily domain-containing protein 5 OS=Homo sapiens GN=MFSD5 PE=2 SV=2

 Score =  211 bits (538), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 128/299 (42%), Positives = 181/299 (60%), Gaps = 10/299 (3%)

Query: 6   YLVFGALGAVVAALELSKTNKD---RINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
           YL F  L A    LELS+       R  ++ +F  F+ ++  VY L +A DWLQ PY+Y 
Sbjct: 6   YLAFVGLLASCLGLELSRCRAKPPGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYK 65

Query: 63  LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
           LY  Y F +G+I  L++ G  S++LFG +  SL D  GRK +CV + LTY L C+TK S 
Sbjct: 66  LYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQ 125

Query: 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
            Y +L++GR LGG++T+LLFSAFE+W + EH +R  F  +W+  TF++A F  N ++A++
Sbjct: 126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAF-WNHVLAVV 184

Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
           +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G   
Sbjct: 185 AGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENY---DRQRAFSRTCAGGLR 241

Query: 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
            + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G IF++FM AS+LGSSL
Sbjct: 242 CLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGA--PLGIIFSSFMAASLLGSSL 298

Homo sapiens (taxid: 9606)

>sp|Q0VC03|MFSD5_BOVIN Major facilitator superfamily domain-containing protein 5 OS=Bos taurus GN=MFSD5 PE=2 SV=1

 Score =  211 bits (536), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 127/299 (42%), Positives = 180/299 (60%), Gaps = 10/299 (3%)

Query: 6   YLVFGALGAVVAALELSKTNKD---RINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
           YL F  L A    LELS+       R  ++ +F  F+ ++  VY L +A DWLQ PY+Y 
Sbjct: 6   YLAFVVLLASCLGLELSRCRAKPSGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYK 65

Query: 63  LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
           LY  Y F + +I  L++ G  S++LFG +  SL D  GRK++CV + LTY L C+TK S 
Sbjct: 66  LYQHYHFLEAQIAILYVCGLASTVLFGLVASSLVDWLGRKKSCVLFSLTYSLCCLTKLSR 125

Query: 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
            Y +L++GR LGG++T+LLFSAFE+W + EH +R  F  +W+  TF++A F  N ++A+ 
Sbjct: 126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHLERHDFPTEWIPATFARAAF-WNHVLAVA 184

Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
           +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G   
Sbjct: 185 AGVAAEAVACWMGLGPVAPFVAAIPLLALAGALALHNWGENY---DRQRAFSRTCAGGLR 241

Query: 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
            + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G IF++FM AS+LGSSL
Sbjct: 242 CLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGA--PLGIIFSSFMAASLLGSSL 298

Bos taurus (taxid: 9913)

>sp|Q5R542|MFSD5_PONAB Major facilitator superfamily domain-containing protein 5 OS=Pongo abelii GN=MFSD5 PE=2 SV=1

 Score =  207 bits (528), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 126/299 (42%), Positives = 180/299 (60%), Gaps = 10/299 (3%)

Query: 6   YLVFGALGAVVAALELSKTNKD---RINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
           YL F  L A    LELS+       R  ++ +F   + ++  VY L +A DWLQ PY+Y 
Sbjct: 6   YLAFVGLLASCLGLELSRCRAKPPGRACSNPSFLRSQLDFYQVYFLALAADWLQAPYLYK 65

Query: 63  LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
           LY  Y F +G+I  L++ G  S++LFG +  SL D  GRK +CV + LTY L C+TK S 
Sbjct: 66  LYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQ 125

Query: 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
            Y +L++GR LGG++T+LLFSAFE+W + EH +R  F  +W+  TF++A F  N ++A++
Sbjct: 126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPTEWIPATFARAAF-WNHVLAVV 184

Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
           +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G   
Sbjct: 185 AGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENY---DRQRAFSRTCAGGLR 241

Query: 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
            + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G +F++FM AS+LGSSL
Sbjct: 242 CLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGA--PLGIVFSSFMAASLLGSSL 298

Pongo abelii (taxid: 9601)

>sp|Q1KKV8|MFSD5_TAKRU Major facilitator superfamily domain-containing protein 5 OS=Takifugu rubripes GN=mfsd5 PE=3 SV=1

 Score =  204 bits (519), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 122/321 (38%), Positives = 173/321 (53%), Gaps = 29/321 (9%)

Query: 6   YLVFGALGAVVAALELSKTNKDRINTSSA----FNSFKNNYLLVYSLMMAGDWLQGPYVY 61
           Y    +L A+   LEL+        +S+A    F  F+  +L  Y L +  DWLQGPY+Y
Sbjct: 6   YFAVISLLALCVGLELTARRLTPPESSAAVNPAFRRFQATFLRAYLLALWADWLQGPYLY 65

Query: 62  YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHS 121
            LY  Y F + +I  L++ G  S +LF    G L+   GR+  C+ +CL+Y   C+TK S
Sbjct: 66  KLYRHYSFLESQIAILYVCGLASCVLFAPFSGWLSQALGRRHMCIFFCLSYATCCLTKLS 125

Query: 122 PQYKILMIGRILGGIATSLLFSAFESWLVAEHNK-RGFEQQWLSITFSKAIFLGNGLVAI 180
             Y +L++GRILGG++TSLL + FESW V  H +   F ++W+  TF+KA    +GL A+
Sbjct: 126 RDYFVLIVGRILGGLSTSLLTTTFESWYVHHHVEIHDFPKEWIPTTFTKAATWNHGL-AV 184

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD--PSESKDLL----- 233
            +GL  NLL +   LGPVAPF  A  FLA     +L+ W +   +  P   K  L     
Sbjct: 185 GAGLVANLLAEWLHLGPVAPFLLAVPFLACCAWFVLTDWAKEEAEKSPEGIKQTLPLGTL 244

Query: 234 ----TQFRGAAV----------AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE 279
               T     A            + SD+++ LLG +Q+LFE  +Y F+FLWTP L P+  
Sbjct: 245 NGGVTHLSARARFSRSCSDGLRCMLSDKRVMLLGGVQALFESVLYIFIFLWTPVLDPHGS 304

Query: 280 EIPHGFIFATFMLASMLGSSL 300
             P G +F+ FM ASM+GS L
Sbjct: 305 --PLGIVFSCFMAASMVGSLL 323

Takifugu rubripes (taxid: 31033)

>sp|Q6DG19|MFSD5_DANRE Major facilitator superfamily domain-containing protein 5 OS=Danio rerio GN=mfsd5 PE=2 SV=1

 Score =  198 bits (504), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/337 (36%), Positives = 179/337 (53%), Gaps = 34/337 (10%)

Query: 6   YLVFGALGAVVAALE-------LSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGP 58
           YL F  L  +  ALE       LS+  +  +  + AF  F+  +L  Y L +  DWLQGP
Sbjct: 6   YLAFIVLAGLCVALEITARRLTLSQATQTAV-ANPAFQRFQKLFLKAYLLALWADWLQGP 64

Query: 59  YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCIT 118
           Y+Y LY  Y F + +I  L++ G  S +LF  + G L    GR++ C+ +CL Y + CIT
Sbjct: 65  YLYKLYRHYNFLESQIAILYVCGLASCVLFAPVAGWLPQFLGRRQTCLLFCLAYSVCCIT 124

Query: 119 KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGL 177
           K S  Y +L++GR+LGG++TSLL + FE+W V  H +   F ++W+ +TF K      GL
Sbjct: 125 KLSQDYFMLILGRVLGGLSTSLLTTTFEAWYVHGHVDIHDFPKEWIPVTFGKVANWNYGL 184

Query: 178 VAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTEN------YGD------ 225
            A+ +GL  NL  +   LGPVAPF  A   LA     +LS W +        GD      
Sbjct: 185 -AVGAGLVANLFAEWLGLGPVAPFLLAIPSLAACAWFVLSEWGQEDKQEGMNGDKNAPLL 243

Query: 226 -----PSESKDLLTQFRGAAV----AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP 276
                P        +F  + V     + SD ++ LLG +Q+LFE  +Y FVFLWTP L P
Sbjct: 244 NSLNTPKLQLSARARFWRSCVDGLRCLLSDRRVMLLGGVQALFESVLYIFVFLWTPVLDP 303

Query: 277 NDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVE 313
           +    P G +F++ M A+M GS+L  RL   +P R++
Sbjct: 304 HGP--PLGIVFSSLMAATMAGSTL-FRLATSAPYRLQ 337

Danio rerio (taxid: 7955)

>sp|Q08B29|MFSD5_XENLA Major facilitator superfamily domain-containing protein 5 OS=Xenopus laevis GN=mfsd5 PE=2 SV=1

 Score =  185 bits (469), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 105/270 (38%), Positives = 160/270 (59%), Gaps = 7/270 (2%)

Query: 32  SSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTI 91
           + AF  F+ ++   Y   +A DWLQGPY+Y LY  Y F +G+I  +++ GFG+S+  G +
Sbjct: 37  NPAFRQFQYDFYRTYFPALAADWLQGPYLYKLYQHYHFLEGQIAIIYVCGFGASVFAGLV 96

Query: 92  VGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVA 151
              L  + GR+++C+ +CL    S + K S +Y +LM GR+LGG ++SLLFS FE+W   
Sbjct: 97  SVPLTSRLGRRKSCILFCLLLSASYLCKLSQEYFVLMTGRVLGGFSSSLLFSCFEAWYTH 156

Query: 152 EH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210
           EH  +  F  +WL  TF++A    NG +AI +G+  N+  +   LGP +P   A   L +
Sbjct: 157 EHAEQHDFPAEWLPHTFTRAA-AWNGGIAIAAGITANVCAEWLGLGPASPSVLAVPLLVL 215

Query: 211 GMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLW 270
            +V+++  W ENYG  S  + +          +  D ++ LLG IQ+LFE  +Y F+FLW
Sbjct: 216 SVVLVIREWDENYGQTSSFRRVCGD---GLRCLLRDRRVLLLGTIQALFESVVYIFIFLW 272

Query: 271 TPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           TP L P++   P G  F++FM AS +GSSL
Sbjct: 273 TPVLDPHNA--PLGIAFSSFMAASAVGSSL 300

Xenopus laevis (taxid: 8355)

>sp|Q28E13|MFSD5_XENTR Major facilitator superfamily domain-containing protein 5 OS=Xenopus tropicalis GN=mfsd5 PE=2 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 170/301 (56%), Gaps = 12/301 (3%)

Query: 6   YLVFGALGAVVAALELSKTNKDRINTSSA-----FNSFKNNYLLVYSLMMAGDWLQGPYV 60
           Y V   L A+ A LE S  +     +S+A     F  F+ ++   Y   +A DWLQGPY+
Sbjct: 6   YFVLVGLIALWAVLEFSACHSKPSTSSNAVGNPAFRQFQYDFYRTYFPALAADWLQGPYL 65

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           Y LY  Y F +G+I  +++ GFG+S+  G +   L  + GR+++C+ +CL    S + K 
Sbjct: 66  YKLYQHYHFLEGQIAIIYVCGFGASVFAGLVSAPLTSRLGRRKSCILFCLLLSASYLCKL 125

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVA 179
           S +Y +L+ GR+LGG ++SLLFS+FE+W   EH  +  F  +WL  TF++A    NG +A
Sbjct: 126 SQEYFVLITGRVLGGFSSSLLFSSFEAWYTHEHAEQHDFPAEWLPHTFTRAA-AWNGGIA 184

Query: 180 ILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGA 239
           I +G+  N   +   LGP +P   A   L + + +++  W ENYG  S  + +       
Sbjct: 185 IAAGVIANACAEWLGLGPASPSVLAVPLLVLSVALVIREWDENYGQTSSFRRVCGD---G 241

Query: 240 AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSS 299
              +  D ++ LLG IQ+LFE  +Y F+FLWTP L P++   P G  F++FM AS  GSS
Sbjct: 242 LRCLLRDRRVLLLGTIQALFESVVYIFIFLWTPVLDPHN--TPLGIAFSSFMAASAAGSS 299

Query: 300 L 300
           L
Sbjct: 300 L 300

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
255549256	460	conserved hypothetical protein [Ricinus	0.925	0.723	0.927	1e-180
4469023	420	putative protein [Arabidopsis thaliana]	0.922	0.790	0.909	1e-178
224120908	459	predicted protein [Populus trichocarpa]	0.925	0.725	0.918	1e-178
18417054	460	major facilitator protein [Arabidopsis t	0.922	0.721	0.909	1e-178
385137884	460	major facilitator protein, partial [Arab	0.922	0.721	0.909	1e-178
297803322	460	hypothetical protein ARALYDRAFT_913755 [	0.922	0.721	0.909	1e-178
449456403	459	PREDICTED: major facilitator superfamily	0.925	0.725	0.906	1e-177
225455290	460	PREDICTED: major facilitator superfamily	0.925	0.723	0.900	1e-177
224132678	459	predicted protein [Populus trichocarpa]	0.925	0.725	0.903	1e-177
356509214	459	PREDICTED: major facilitator superfamily	0.925	0.725	0.906	1e-176

>gi|255549256|ref|XP_002515682.1| conserved hypothetical protein [Ricinus communis] gi|223545225|gb|EEF46734.1| conserved hypothetical protein [Ricinus communis]

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 309/333 (92%), Positives = 325/333 (97%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+FFY+VFG LGAVVAALELSKTNKDRINTS AFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1   MEVFFYMVFGGLGAVVAALELSKTNKDRINTSPAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           Y+LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC+TYC+TYILSCITKH
Sbjct: 61  YFLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQYK+LMIGR+LGGIATSLLFSAFESWLVAEHNKRGF+QQWLS+TFSKAIFLGNGL+AI
Sbjct: 121 SPQYKVLMIGRVLGGIATSLLFSAFESWLVAEHNKRGFDQQWLSLTFSKAIFLGNGLIAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           LSGLFGNLLVD+F+LGPVAPFDAAACFLAIGM II SSWTEN+GD SESKDLLTQFRGAA
Sbjct: 181 LSGLFGNLLVDTFALGPVAPFDAAACFLAIGMAIIFSSWTENFGDHSESKDLLTQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           +AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 MAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVT 333
           ASRLMA S PRVESYMQIVFVVSS+SL+LPI T
Sbjct: 301 ASRLMAHSSPRVESYMQIVFVVSSISLMLPIAT 333

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4469023|emb|CAB38284.1| putative protein [Arabidopsis thaliana] gi|7269626|emb|CAB81422.1| putative protein [Arabidopsis thaliana]

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 302/332 (90%), Positives = 323/332 (97%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+F+YLVFG LG VVAALELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1   MEIFYYLVFGVLGLVVAALELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61  YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQYK+LM+GR+LGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKA+F GNGLVAI
Sbjct: 121 SPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHNKRGFEQQWLSVTFSKAVFFGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           ++GLFGNLLVD+FSLGPVAPFDAAACFL IGM +ILSSWTENYGDPSE+KDLLTQFRGAA
Sbjct: 181 IAGLFGNLLVDTFSLGPVAPFDAAACFLTIGMAVILSSWTENYGDPSENKDLLTQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIV 332
           ASRL++RS P+VESYMQIVF+VS  +LLLPI+
Sbjct: 301 ASRLLSRSTPKVESYMQIVFLVSGAALLLPIL 332

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120908|ref|XP_002318449.1| predicted protein [Populus trichocarpa] gi|118483361|gb|ABK93582.1| unknown [Populus trichocarpa] gi|222859122|gb|EEE96669.1| predicted protein [Populus trichocarpa]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 306/333 (91%), Positives = 322/333 (96%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME F+YLVFGAL AVV  +ELSKT KDRINTS AFNSFKNNYL+VYSLMMAGDWLQGPYV
Sbjct: 1   MEAFYYLVFGALSAVVLGIELSKTTKDRINTSPAFNSFKNNYLVVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           Y+LY+TYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGR+RACVTYC+TYILSCITKH
Sbjct: 61  YFLYTTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRRRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQY+ILMIGRILGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKAIFLGNGLVAI
Sbjct: 121 SPQYRILMIGRILGGIATSLLFSSFESWLVAEHNKRGFEQQWLSLTFSKAIFLGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           LSGLFGNLLVD+F LGPVAPFDAAACFLAIGM II+SSW+ENYGDPSE+KDLL QFRGAA
Sbjct: 181 LSGLFGNLLVDTFQLGPVAPFDAAACFLAIGMAIIMSSWSENYGDPSENKDLLAQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVT 333
           ASRLMARS PRVESYMQIVFVVSS SLLLPIV+
Sbjct: 301 ASRLMARSSPRVESYMQIVFVVSSASLLLPIVS 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417054|ref|NP_567786.1| major facilitator protein [Arabidopsis thaliana] gi|13272473|gb|AAK17175.1|AF325107_1 putative protein [Arabidopsis thaliana] gi|16930439|gb|AAL31905.1|AF419573_1 AT4g27720/T29A15_210 [Arabidopsis thaliana] gi|15912261|gb|AAL08264.1| AT4g27720/T29A15_210 [Arabidopsis thaliana] gi|21536852|gb|AAM61184.1| putative transporter [Arabidopsis thaliana] gi|27764934|gb|AAO23588.1| At4g27720/T29A15_210 [Arabidopsis thaliana] gi|332659985|gb|AEE85385.1| major facilitator protein [Arabidopsis thaliana]

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 302/332 (90%), Positives = 323/332 (97%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+F+YLVFG LG VVAALELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1   MEIFYYLVFGVLGLVVAALELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61  YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQYK+LM+GR+LGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKA+F GNGLVAI
Sbjct: 121 SPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHNKRGFEQQWLSVTFSKAVFFGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           ++GLFGNLLVD+FSLGPVAPFDAAACFL IGM +ILSSWTENYGDPSE+KDLLTQFRGAA
Sbjct: 181 IAGLFGNLLVDTFSLGPVAPFDAAACFLTIGMAVILSSWTENYGDPSENKDLLTQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIV 332
           ASRL++RS P+VESYMQIVF+VS  +LLLPI+
Sbjct: 301 ASRLLSRSTPKVESYMQIVFLVSGAALLLPIL 332

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|385137884|gb|AFI41203.1| major facilitator protein, partial [Arabidopsis thaliana]

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 302/332 (90%), Positives = 323/332 (97%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+F+YLVFG LG VVAALELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1   MEIFYYLVFGVLGLVVAALELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61  YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQYK+LM+GR+LGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKA+F GNGLVAI
Sbjct: 121 SPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHNKRGFEQQWLSVTFSKAVFFGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           ++GLFGNLLVD+FSLGPVAPFDAAACFLAIGM +ILSSWTENYGDPSE+KDLLTQFRGAA
Sbjct: 181 IAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWTENYGDPSENKDLLTQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIV 332
           ASRL++RS P+VE YMQIVF+VS  +LLLPI+
Sbjct: 301 ASRLLSRSTPKVEGYMQIVFLVSGAALLLPIL 332

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803322|ref|XP_002869545.1| hypothetical protein ARALYDRAFT_913755 [Arabidopsis lyrata subsp. lyrata] gi|297315381|gb|EFH45804.1| hypothetical protein ARALYDRAFT_913755 [Arabidopsis lyrata subsp. lyrata]

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 302/332 (90%), Positives = 324/332 (97%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+F+YLVFG LG VVAALELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1   MEVFYYLVFGVLGLVVAALELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61  YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQYK+LM+GR+LGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKA+F GNGLVAI
Sbjct: 121 SPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHNKRGFEQQWLSVTFSKAVFFGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           ++GLFGNLLVD+FSLGPVAPFDAAACFLAIGM +ILSSWTENYGDPSE+KDLLTQFRGAA
Sbjct: 181 IAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWTENYGDPSENKDLLTQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN+EEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEEEIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIV 332
           ASRL++RS P+VESYMQIVF+VS  +LLLPI+
Sbjct: 301 ASRLLSRSTPKVESYMQIVFLVSGAALLLPIL 332

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456403|ref|XP_004145939.1| PREDICTED: major facilitator superfamily domain-containing protein 5-like [Cucumis sativus] gi|449497371|ref|XP_004160383.1| PREDICTED: major facilitator superfamily domain-containing protein 5-like [Cucumis sativus]

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 302/333 (90%), Positives = 324/333 (97%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+F++LVFGAL  VV ALEL+KTNKDRINT SAFN+FKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1   MEIFYFLVFGALSLVVVALELTKTNKDRINTPSAFNAFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           YYLYS YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC+TYC+TYILSC+TKH
Sbjct: 61  YYLYSQYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCVTKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SP+YK+LM+GR+LGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI
Sbjct: 121 SPEYKVLMLGRVLGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           ++GLFGN+LVDS SLGPVAPFDAAACFLAIGM II+SSWTENYGDPSE+KDLLTQFRGAA
Sbjct: 181 IAGLFGNVLVDSLSLGPVAPFDAAACFLAIGMAIIMSSWTENYGDPSENKDLLTQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN+E+IPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNNEDIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVT 333
           ASRLMAR+ P+VESYMQIVFVVSS SL+LPIVT
Sbjct: 301 ASRLMARNTPKVESYMQIVFVVSSASLVLPIVT 333

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455290|ref|XP_002274807.1| PREDICTED: major facilitator superfamily domain-containing protein 5 [Vitis vinifera] gi|302143948|emb|CBI23053.3| unnamed protein product [Vitis vinifera]

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 300/333 (90%), Positives = 325/333 (97%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+F++LVFGAL AVVA +ELSK NKDR+NT++AFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1   MEVFYFLVFGALSAVVAVIELSKNNKDRVNTTTAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           Y+LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61  YFLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQY+ILM+GR+LGGIATSLLFSAFESWLVAEHNKRGFEQQWLS+TFSKAIFLGNGLVAI
Sbjct: 121 SPQYRILMVGRVLGGIATSLLFSAFESWLVAEHNKRGFEQQWLSVTFSKAIFLGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           LSGLFGNLLVD+ SLGPVAPFDAAACFLA+GM +ILSSW+ENYGDPSE+KDLLTQF+GAA
Sbjct: 181 LSGLFGNLLVDNLSLGPVAPFDAAACFLAVGMAVILSSWSENYGDPSENKDLLTQFKGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN+EEIPHGFIFATFMLASMLGSS+
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEEEIPHGFIFATFMLASMLGSSV 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVT 333
           ASRL+AR+  +VESYMQIVFV+SS SLLLPIVT
Sbjct: 301 ASRLLARASLKVESYMQIVFVISSASLLLPIVT 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132678|ref|XP_002321382.1| predicted protein [Populus trichocarpa] gi|222868378|gb|EEF05509.1| predicted protein [Populus trichocarpa]

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 301/333 (90%), Positives = 321/333 (96%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME F+YLVF AL AVV  +E+SKT KDRINTS AFNSFKNNYL+VYSLMMAGDWLQGPYV
Sbjct: 1   MEAFYYLVFAALSAVVFGVEISKTTKDRINTSPAFNSFKNNYLVVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           Y+LY+TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR+RACVTYC+TYILSCITKH
Sbjct: 61  YFLYTTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRRRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQY++LMIGR+LGGIATSLLFS+FESWLVAEHNKRGF+QQWLS+TFSKAIFLGNGLVAI
Sbjct: 121 SPQYRVLMIGRVLGGIATSLLFSSFESWLVAEHNKRGFDQQWLSLTFSKAIFLGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           LSGLFGN LVD+F LGPVAPFDAAACFLAIGM +ILSSWTENYGDPSE+KDL+TQFRGAA
Sbjct: 181 LSGLFGNFLVDTFQLGPVAPFDAAACFLAIGMAVILSSWTENYGDPSENKDLITQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSS+
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSI 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVT 333
           ASRLMARS PRVESYMQIVF+VSS SLLLPIVT
Sbjct: 301 ASRLMARSSPRVESYMQIVFIVSSASLLLPIVT 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509214|ref|XP_003523346.1| PREDICTED: major facilitator superfamily domain-containing protein 5-like [Glycine max]

 Score =  622 bits (1604), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 302/333 (90%), Positives = 321/333 (96%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+FFY VFG L AVVA +ELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1   MELFFYTVFGGLAAVVAVMELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           YYLYSTYG+GKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61  YYLYSTYGYGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQYK+LM+GRILGGIATSLLFSAFESWLVAEH KRGF+QQWLS+TFSKAIFLGNGLVAI
Sbjct: 121 SPQYKVLMLGRILGGIATSLLFSAFESWLVAEHFKRGFDQQWLSLTFSKAIFLGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           LSGLFGN+LVD+ +LGPVAPFDAA+CFLAIGM IILSSWTEN+GDPSE+KDLLTQFRGAA
Sbjct: 181 LSGLFGNVLVDTLALGPVAPFDAASCFLAIGMAIILSSWTENFGDPSENKDLLTQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVT 333
           ASRLM+RS  RVESYMQIVF VSS +L+LPI+T
Sbjct: 301 ASRLMSRSSLRVESYMQIVFAVSSAALMLPILT 333

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
TAIR|locus:2137707	460	AT4G27720 [Arabidopsis thalian	0.922	0.721	0.822	1.5e-147
TAIR|locus:2082971	460	AT3G49310 [Arabidopsis thalian	0.925	0.723	0.795	5.4e-145
TAIR|locus:2019429	462	AT1G64650 [Arabidopsis thalian	0.925	0.720	0.801	1.7e-144
WB|WBGene00021870	432	Y54G2A.4 [Caenorhabditis elega	0.833	0.694	0.493	2.1e-70
UNIPROTKB|Q6N075	450	MFSD5 "Major facilitator super	0.775	0.62	0.404	7e-54
MGI|MGI:2145901	450	Mfsd5 "major facilitator super	0.775	0.62	0.404	8.9e-54
UNIPROTKB|Q0VC03	450	MFSD5 "Major facilitator super	0.775	0.62	0.401	4.9e-53
ZFIN|ZDB-GENE-040718-468	481	mfsd5 "major facilitator super	0.547	0.409	0.4	6.8e-47
TAIR|locus:1005716655	449	AT2G23093 "AT2G23093" [Arabido	0.702	0.563	0.245	8.2e-17
CGD|CAL0001498	496	HGT18 [Candida albicans (taxid	0.455	0.330	0.313	1e-06

TAIR|locus:2137707 AT4G27720 [Arabidopsis thaliana (taxid:3702)]

 Score = 1441 (512.3 bits), Expect = 1.5e-147, P = 1.5e-147
 Identities = 273/332 (82%), Positives = 290/332 (87%)

Query:     1 MEMFFYLVFXXXXXXXXXXELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
             ME+F+YLVF          ELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct:     1 MEIFYYLVFGVLGLVVAALELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query:    61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
             YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct:    61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query:   121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
             SPQYK+LM+GR+LGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKA+F GNGLVAI
Sbjct:   121 SPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHNKRGFEQQWLSVTFSKAVFFGNGLVAI 180

Query:   181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
             ++GLFGNLLVD+FSLGPVAPFDAAACFL IGM +ILSSWTENYGDPSE+KDLLTQFRGAA
Sbjct:   181 IAGLFGNLLVDTFSLGPVAPFDAAACFLTIGMAVILSSWTENYGDPSENKDLLTQFRGAA 240

Query:   241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFXXXXXXXXXX 300
             VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF          
Sbjct:   241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300

Query:   301 XXXXXXXXPPRVESYMQIVFXXXXXXXXXPIV 332
                      P+VESYMQIVF         PI+
Sbjct:   301 ASRLLSRSTPKVESYMQIVFLVSGAALLLPIL 332

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2082971 AT3G49310 [Arabidopsis thaliana (taxid:3702)]

 Score = 1400 (497.9 bits), Expect = 5.4e-145, Sum P(2) = 5.4e-145
 Identities = 265/333 (79%), Positives = 286/333 (85%)

Query:     1 MEMFFYLVFXXXXXXXXXXELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
             ME+F+YLVF          ELSKTNKDRINTSS+FNSFKNNYLLV+S+MMAGDWLQGPYV
Sbjct:     1 MEVFYYLVFGVMAAVVAALELSKTNKDRINTSSSFNSFKNNYLLVFSIMMAGDWLQGPYV 60

Query:    61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
             YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+ YILSCITKH
Sbjct:    61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCIVYILSCITKH 120

Query:   121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
             SPQYK+LM+GRILGGIATSLLFSAFESWL+AEHNKR FEQQWLS+TFSKA+FLGNGLVAI
Sbjct:   121 SPQYKVLMVGRILGGIATSLLFSAFESWLIAEHNKRNFEQQWLSLTFSKAVFLGNGLVAI 180

Query:   181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
             LSGLFGNLLVD+FS GPVAPFDAAACFLAIGM IIL +W+EN+GDPS+SKDLLTQF+ AA
Sbjct:   181 LSGLFGNLLVDTFSFGPVAPFDAAACFLAIGMAIILGTWSENFGDPSDSKDLLTQFKVAA 240

Query:   241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFXXXXXXXXXX 300
             +AIASDEKIALLGAIQSLFE SMYTFVFLWTPALSPNDEEIPHGF+FATF          
Sbjct:   241 IAIASDEKIALLGAIQSLFEASMYTFVFLWTPALSPNDEEIPHGFVFATFMLASMLGSSL 300

Query:   301 XXXXXXXXPPRVESYMQIVFXXXXXXXXXPIVT 333
                       RVE+YMQIVF         PI T
Sbjct:   301 AARLMSRSSLRVENYMQIVFLVSAASLLLPITT 333

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2019429 AT1G64650 [Arabidopsis thaliana (taxid:3702)]

 Score = 1412 (502.1 bits), Expect = 1.7e-144, P = 1.7e-144
 Identities = 267/333 (80%), Positives = 289/333 (86%)

Query:     1 MEMFFYLVFXXXXXXXXXXELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
             ME+F+++VF          ELSK+NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct:     1 MEIFYFVVFGGLAAIVAGLELSKSNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query:    61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
             YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA +TYC+TYILSCITKH
Sbjct:    61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRASITYCITYILSCITKH 120

Query:   121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
             SPQYK+LM+GR+LGGIATSLLFSAFESWLVAEHNKRGFEQQWLS+TFSKAIFLGNGLVAI
Sbjct:   121 SPQYKVLMVGRVLGGIATSLLFSAFESWLVAEHNKRGFEQQWLSVTFSKAIFLGNGLVAI 180

Query:   181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
             ++GLFGN LVDS SLGPVAPFDAAACFLAIGM +I+SSW+ENYGDPSE+KDLLTQF+ AA
Sbjct:   181 IAGLFGNYLVDSLSLGPVAPFDAAACFLAIGMAVIISSWSENYGDPSENKDLLTQFKNAA 240

Query:   241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFXXXXXXXXXX 300
              AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN+E+IPHGFIFATF          
Sbjct:   241 SAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEEDIPHGFIFATFMLASMLGSSI 300

Query:   301 XXXXXXXXPPRVESYMQIVFXXXXXXXXXPIVT 333
                      P+VESYMQIVF         P+VT
Sbjct:   301 ASRLLAHSSPKVESYMQIVFVISSAALMLPVVT 333

GO:0009507 "chloroplast" evidence=ISM

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

WB|WBGene00021870 Y54G2A.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 153/310 (49%), Positives = 187/310 (60%)

Query:    30 NTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFG 89
             N    F SF+  YL+VY + +AGDWLQGP+VY LY +YG  K +I  LFIAGFGSS+LFG
Sbjct:    27 NDDPKFKSFQRTYLIVYMMAVAGDWLQGPHVYALYESYGMSKHQIEILFIAGFGSSLLFG 86

Query:    90 TIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWL 149
             T +GS+ADK GR+  C+ Y + Y  +CITKH     +LMIGR LGGIATS+L+SAFESWL
Sbjct:    87 TFIGSIADKFGRRNNCLMYAILYGGACITKHFGNMPVLMIGRFLGGIATSILYSAFESWL 146

Query:   150 VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209
             + EHN RGF    L   FS A  LGN L+AI+SG+    + + F  G VAPFD A   L 
Sbjct:   147 IFEHNTRGFSDSLLGTVFSNAA-LGNSLIAIISGVAAQFVAERF--GFVAPFDLALSVLL 203

Query:   210 IGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL 269
             I  VII+++W ENYG+  E   +   F+ A  AI  D  +  LG +QSLFEGSMYTFV  
Sbjct:   204 IMAVIIMNTWPENYGN--EKAPVKESFQKATQAIREDPNVFCLGLVQSLFEGSMYTFVLE 261

Query:   270 WTPALS--PNDEEIPHGFIFATFXXXXXXXXXXXXXXXXXXPPRVESYMQIVFXXXXXXX 327
             WTPALS    D  IPHG+IFA F                   P  ES+M+ V        
Sbjct:   262 WTPALSRAAGDVGIPHGYIFAAFMVATMIGSSVFKLLQQHERP--ESFMRYVLLLAAVCL 319

Query:   328 XXPIVTIPGS 337
               PIV  P S
Sbjct:   320 SMPIVA-PDS 328

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q6N075 MFSD5 "Major facilitator superfamily domain-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 117/289 (40%), Positives = 169/289 (58%)

Query:     6 YLVFXXXXXXXXXXELSKTNKD---RINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
             YL F          ELS+       R  ++ +F  F+ ++  VY L +A DWLQ PY+Y 
Sbjct:     6 YLAFVGLLASCLGLELSRCRAKPPGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYK 65

Query:    63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
             LY  Y F +G+I  L++ G  S++LFG +  SL D  GRK +CV + LTY L C+TK S 
Sbjct:    66 LYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQ 125

Query:   123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
              Y +L++GR LGG++T+LLFSAFE+W + EH +R  F  +W+  TF++A F  N ++A++
Sbjct:   126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFW-NHVLAVV 184

Query:   182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
             +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G   
Sbjct:   185 AGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENY---DRQRAFSRTCAGGLR 241

Query:   242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF 290
              + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G IF++F
Sbjct:   242 CLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGA--PLGIIFSSF 288

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2145901 Mfsd5 "major facilitator superfamily domain containing 5" [Mus musculus (taxid:10090)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 117/289 (40%), Positives = 169/289 (58%)

Query:     6 YLVFXXXXXXXXXXELSKTNK---DRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
             YL F          ELS+       R  ++ +F  F+ ++  VY L +A DWLQ PY+Y 
Sbjct:     6 YLSFVGLLASCLGLELSRCRARPPGRACSNPSFLQFQLDFYQVYFLALAADWLQAPYLYK 65

Query:    63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
             LY  Y F +G+I  L++ G  S++LFG +  SL D  GRK++CV + LTY L CITK S 
Sbjct:    66 LYQHYHFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKKSCVLFSLTYSLCCITKLSQ 125

Query:   123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
              Y +L++GR LGG++T+LLFSAFE+W + EH +R  F  +W+  TF++A F  N ++A+ 
Sbjct:   126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFW-NHVLAVA 184

Query:   182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
             +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G   
Sbjct:   185 AGVAAEAVASWIGLGPVAPFVAAIPLLALTGALALRNWGENY---DRQRAFSKTCAGGLR 241

Query:   242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF 290
              + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G +F++F
Sbjct:   242 CLLSDRRVLLLGVIQALFESVIFIFVFLWTPVLDPHGA--PLGIVFSSF 288

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q0VC03 MFSD5 "Major facilitator superfamily domain-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 116/289 (40%), Positives = 168/289 (58%)

Query:     6 YLVFXXXXXXXXXXELSKTN---KDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
             YL F          ELS+       R  ++ +F  F+ ++  VY L +A DWLQ PY+Y 
Sbjct:     6 YLAFVVLLASCLGLELSRCRAKPSGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYK 65

Query:    63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
             LY  Y F + +I  L++ G  S++LFG +  SL D  GRK++CV + LTY L C+TK S 
Sbjct:    66 LYQHYHFLEAQIAILYVCGLASTVLFGLVASSLVDWLGRKKSCVLFSLTYSLCCLTKLSR 125

Query:   123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
              Y +L++GR LGG++T+LLFSAFE+W + EH +R  F  +W+  TF++A F  N ++A+ 
Sbjct:   126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHLERHDFPTEWIPATFARAAFW-NHVLAVA 184

Query:   182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
             +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G   
Sbjct:   185 AGVAAEAVACWMGLGPVAPFVAAIPLLALAGALALHNWGENY---DRQRAFSRTCAGGLR 241

Query:   242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF 290
              + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G IF++F
Sbjct:   242 CLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGA--PLGIIFSSF 288

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

ZFIN|ZDB-GENE-040718-468 mfsd5 "major facilitator superfamily domain containing 5" [Danio rerio (taxid:7955)]

 Score = 386 (140.9 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
 Identities = 80/200 (40%), Positives = 116/200 (58%)

Query:    21 LSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIA 80
             LS+  +  +  + AF  F+  +L  Y L +  DWLQGPY+Y LY  Y F + +I  L++ 
Sbjct:    28 LSQATQTAV-ANPAFQRFQKLFLKAYLLALWADWLQGPYLYKLYRHYNFLESQIAILYVC 86

Query:    81 GFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSL 140
             G  S +LF  + G L    GR++ C+ +CL Y + CITK S  Y +L++GR+LGG++TSL
Sbjct:    87 GLASCVLFAPVAGWLPQFLGRRQTCLLFCLAYSVCCITKLSQDYFMLILGRVLGGLSTSL 146

Query:   141 LFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVA 199
             L + FE+W V  H +   F ++W+ +TF K      GL A+ +GL  NL  +   LGPVA
Sbjct:   147 LTTTFEAWYVHGHVDIHDFPKEWIPVTFGKVANWNYGL-AVGAGLVANLFAEWLGLGPVA 205

Query:   200 PFDAAACFLAIGMVIILSSW 219
             PF  A   LA     +LS W
Sbjct:   206 PFLLAIPSLAACAWFVLSEW 225

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:1005716655 AT2G23093 "AT2G23093" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 8.2e-17, P = 8.2e-17
 Identities = 64/261 (24%), Positives = 118/261 (45%)

Query:    32 SSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTI 91
             SS+F  F+  +L +Y+L    + L   Y     +TYG  K  +      G+ ++++ G +
Sbjct:    48 SSSFARFQRWFLAIYTLSSVMEGLLSVYGELELTTYGLSKESMVFYLCVGYSTALVLGPV 107

Query:    92 VGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFS-AFESWLV 150
             +G ++D  G+K+ C+ YC+ +++  + K            +   +A  L++S  FE+WLV
Sbjct:   108 LGVVSDLIGQKKICLLYCVLHLIVGVWKRITMSPSAWFANVFLSLA-GLVYSFGFETWLV 166

Query:   151 AEHNKRGFEQQWLSITFSKAIFLGNGLVAILSG-LFGNLLVDSFSLGPVAPFDAAACFLA 209
              EH K+      L+ TF    FL +   +++ G +  N LV       +A    A+  L+
Sbjct:   167 VEHEKQSQRNDSLNETFWLMTFLESA--SLIGGQVLANWLVGENVQDGIALSATASLLLS 224

Query:   210 IGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL 269
             +  +I +    +        +D  T F      +  D++I  LG  Q+  + S   F  L
Sbjct:   225 VVTIICIVQTAKEPLKTLPFRDYSTAFYAY---VLGDKRIWFLGTSQACLQFSTAVFWIL 281

Query:   270 WTPALSPNDEEIPHGFIFATF 290
             W P +  +  E+  G I+  F
Sbjct:   282 WAPTIVADGREVNLGLIYPCF 302

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0001498 HGT18 [Candida albicans (taxid:5476)]

 Score = 141 (54.7 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 58/185 (31%), Positives = 92/185 (49%)

Query:    73 EIGQLFIAGFGSSMLFGTI-VGSLADKQGRKRACVTYCLTYIL-SCITKHSPQYKILMIG 130
             +IG L  + F    LFG+  VG LADK GRK+  + +CL YI+ S I   S  Y  L++G
Sbjct:    73 QIG-LVTSIFSIGGLFGSFYVGHLADKYGRKKTSLLHCLLYIIGSTINGLSNTYASLLLG 131

Query:   131 RILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSK-AIFLGNGLVAILSGLFGNLL 189
             R + G+      SA     +  +     E + L  + ++ +I +G     +LS  + N  
Sbjct:   132 RFICGLGAG---SALVITSIYINEVSPIETKGLLGSMNQFSINIGILFTQLLSLNWSNDN 188

Query:   190 VDSFSLGPVAPFDAAACFLAIGMVIILSS-------WTENYGDPSESKDLLTQFRGAAVA 242
                + L     F AA  F+A+  VI++SS       W  N GD +E+  +L + RG + +
Sbjct:   189 DWRWLL-----FMAA--FIAVANVIVVSSYLNESPVWLANQGDTAEAFTILHRLRGGSYS 241

Query:   243 IASDE 247
             +A+DE
Sbjct:   242 VATDE 246

GO:0008643 "carbohydrate transport" evidence=ISS

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0015758 "glucose transport" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	360
pfam05631	354	pfam05631, DUF791, Protein of unknown function (DU	0.0
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.003

>gnl|CDD|114359 pfam05631, DUF791, Protein of unknown function (DUF791)

 Score =  567 bits (1463), Expect = 0.0
 Identities = 267/330 (80%), Positives = 290/330 (87%), Gaps = 1/330 (0%)

Query: 4   FFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYL 63
           F+YLVFG L AVVA LEL K +KDR NT   FNSFKNNYLLVYS+MMAGDWLQGPYVYYL
Sbjct: 1   FYYLVFGGLAAVVALLELYKRSKDRSNTDPKFNSFKNNYLLVYSMMMAGDWLQGPYVYYL 60

Query: 64  YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQ 123
           YS+YGF KG+IG LFIAGFGSSMLFGTIVGSLADKQGRKRAC+TYC+ YILSCITKHSP 
Sbjct: 61  YSSYGFSKGDIGILFIAGFGSSMLFGTIVGSLADKQGRKRACLTYCILYILSCITKHSPN 120

Query: 124 YKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSG 183
           YK+LMIGR LGGIATSLLFSAFESWL+AEHNKRGF  QWLS TFSKA FLGNGLVAI+SG
Sbjct: 121 YKVLMIGRFLGGIATSLLFSAFESWLIAEHNKRGFSDQWLSTTFSKAAFLGNGLVAIISG 180

Query: 184 LFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAI 243
           LF NLL D F  GPVAPFDAAACFLAIGM IIL++W+ENYGDPS+ KDL  QF+ AA AI
Sbjct: 181 LFANLLADRFGFGPVAPFDAAACFLAIGMAIILNTWSENYGDPSDKKDLKEQFKVAAQAI 240

Query: 244 ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASR 303
           ASD  +  LG +QSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSS+A+R
Sbjct: 241 ASDPNVFCLGLVQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSVAAR 300

Query: 304 LMARSPPRVESYMQIVFVVSSVSLLLPIVT 333
           L+ R   RVESYMQIVF++S+V L LPIVT
Sbjct: 301 LLQRH-LRVESYMQIVFLLSAVCLSLPIVT 329

This family consists of several eukaryotic proteins of unknown function. Length = 354

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 64/300 (21%), Positives = 103/300 (34%), Gaps = 9/300 (3%)

Query: 43  LLVYSLMMAGDWLQGP-YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR 101
            L   L   G  L GP    YL    G    EIG L  A      L   + G L+D+ GR
Sbjct: 2   FLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGR 61

Query: 102 KRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQ 160
           +R  +   L + L   +   +    +L++ R+L G+    LF A  + L+A+        
Sbjct: 62  RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAA-LIADWFPPEERG 120

Query: 161 QWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWT 220
           + L +     +  G GL A L  L G LL   F         A    LA  +  +L    
Sbjct: 121 RALGL-----LSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRP 175

Query: 221 E-NYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE 279
                 P  +++       A   +  D  + LL A+            +L          
Sbjct: 176 PPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLS 235

Query: 280 EIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTIPGSTF 339
            +  G +     L   +G  L  RL  R   R    + ++ ++ +   L  +     S +
Sbjct: 236 ALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLW 295

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 4/178 (2%)

Query: 43  LLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK 102
            L + L      L  P +  L    G    + G +  A      L   + G L+D+ GR+
Sbjct: 5   FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRR 64

Query: 103 RA-CVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWL--VAEHNKRGFE 159
           R   +   L  + S +   +    +L++GR L G+    L+ A  + +       +RG  
Sbjct: 65  RVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRA 124

Query: 160 QQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILS 217
               S  F     LG  L  +L+   G   +    L  +    A      + ++++L+
Sbjct: 125 LGLFSAGFGLGALLGPLLGGLLAESLGWRWL-FLILAILGLLLALLLLFLLRLLLLLA 181

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	100.0
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	99.97
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.96
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.95
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.95
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.94
PRK03545	390	putative arabinose transporter; Provisional	99.94
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.94
PRK10133	438	L-fucose transporter; Provisional	99.94
TIGR00891	405	2A0112 putative sialic acid transporter.	99.94
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.94
PRK10642	490	proline/glycine betaine transporter; Provisional	99.94
PRK15075	434	citrate-proton symporter; Provisional	99.93
PRK09952	438	shikimate transporter; Provisional	99.93
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.93
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.93
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.93
PRK09705	393	cynX putative cyanate transporter; Provisional	99.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.93
PLN00028	476	nitrate transmembrane transporter; Provisional	99.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.93
TIGR00900	365	2A0121 H+ Antiporter protein.	99.93
PRK10091	382	MFS transport protein AraJ; Provisional	99.93
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.93
PRK11663	434	regulatory protein UhpC; Provisional	99.93
PRK12307	426	putative sialic acid transporter; Provisional	99.93
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.92
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.92
PRK03699	394	putative transporter; Provisional	99.92
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.92
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.92
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.92
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.92
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.91
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.91
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.91
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.91
TIGR00893	399	2A0114 d-galactonate transporter.	99.91
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.91
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.9
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.9
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.9
PRK12382	392	putative transporter; Provisional	99.9
PRK09874	408	drug efflux system protein MdtG; Provisional	99.9
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.9
PRK03893	496	putative sialic acid transporter; Provisional	99.9
PRK03633	381	putative MFS family transporter protein; Provision	99.9
PRK05122	399	major facilitator superfamily transporter; Provisi	99.9
PRK10504	471	putative transporter; Provisional	99.9
TIGR00895	398	2A0115 benzoate transport.	99.9
PRK15011	393	sugar efflux transporter B; Provisional	99.89
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.89
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.89
PRK10489	417	enterobactin exporter EntS; Provisional	99.89
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.89
PRK11043	401	putative transporter; Provisional	99.89
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.89
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.89
PRK10054	395	putative transporter; Provisional	99.89
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.89
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.88
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.88
TIGR00805	633	oat sodium-independent organic anion transporter.	99.88
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.88
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.88
TIGR00901	356	2A0125 AmpG-related permease.	99.87
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.87
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.87
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.86
KOG2532	466	consensus Permease of the major facilitator superf	99.86
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.86
TIGR00898	505	2A0119 cation transport protein.	99.85
PRK11902	402	ampG muropeptide transporter; Reviewed	99.85
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.85
PRK11010	491	ampG muropeptide transporter; Validated	99.85
PRK09528	420	lacY galactoside permease; Reviewed	99.83
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.83
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.83
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.82
KOG2533	495	consensus Permease of the major facilitator superf	99.81
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.81
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.8
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.8
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.79
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.79
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.78
KOG0254	513	consensus Predicted transporter (major facilitator	99.78
KOG0569	485	consensus Permease of the major facilitator superf	99.77
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.77
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.75
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.74
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.73
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.72
PRK09669	444	putative symporter YagG; Provisional	99.7
PF13347	428	MFS_2: MFS/sugar transport protein	99.7
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.7
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.7
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.68
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.67
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.66
PRK10429	473	melibiose:sodium symporter; Provisional	99.65
PRK09848	448	glucuronide transporter; Provisional	99.65
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.63
PTZ00207	591	hypothetical protein; Provisional	99.63
COG2211	467	MelB Na+/melibiose symporter and related transport	99.63
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.61
KOG2563	480	consensus Permease of the major facilitator superf	99.61
KOG2615	451	consensus Permease of the major facilitator superf	99.61
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.57
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.57
PRK11462	460	putative transporter; Provisional	99.57
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.53
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.49
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.49
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.48
PRK15011	393	sugar efflux transporter B; Provisional	99.42
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.42
PRK09528	420	lacY galactoside permease; Reviewed	99.37
PRK10642	490	proline/glycine betaine transporter; Provisional	99.36
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.36
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.34
PRK05122	399	major facilitator superfamily transporter; Provisi	99.34
PRK03633	381	putative MFS family transporter protein; Provision	99.33
PRK09952	438	shikimate transporter; Provisional	99.32
PRK03545	390	putative arabinose transporter; Provisional	99.32
PRK03699	394	putative transporter; Provisional	99.32
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.31
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.31
PRK09705	393	cynX putative cyanate transporter; Provisional	99.31
PRK09874	408	drug efflux system protein MdtG; Provisional	99.31
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.3
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.29
PRK10489	417	enterobactin exporter EntS; Provisional	99.29
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.28
KOG3626	735	consensus Organic anion transporter [Secondary met	99.27
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.27
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.25
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.23
PRK15075	434	citrate-proton symporter; Provisional	99.23
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.2
PRK12382	392	putative transporter; Provisional	99.19
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.17
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.17
PRK10091	382	MFS transport protein AraJ; Provisional	99.17
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.16
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.16
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.16
PRK11010	491	ampG muropeptide transporter; Validated	99.15
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.15
PRK10504	471	putative transporter; Provisional	99.13
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.11
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.11
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.11
TIGR00900	365	2A0121 H+ Antiporter protein.	99.1
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.07
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.06
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.06
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.06
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.05
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.05
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.04
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.01
PRK09848	448	glucuronide transporter; Provisional	99.01
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.99
PRK03893	496	putative sialic acid transporter; Provisional	98.97
PRK11902	402	ampG muropeptide transporter; Reviewed	98.97
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.97
PRK12307	426	putative sialic acid transporter; Provisional	98.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.96
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.95
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.95
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.94
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.94
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.94
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.93
PLN00028	476	nitrate transmembrane transporter; Provisional	98.93
PRK10054	395	putative transporter; Provisional	98.93
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.92
TIGR00891	405	2A0112 putative sialic acid transporter.	98.92
PRK11043	401	putative transporter; Provisional	98.91
PRK10133	438	L-fucose transporter; Provisional	98.91
TIGR00901	356	2A0125 AmpG-related permease.	98.91
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.9
PRK11663	434	regulatory protein UhpC; Provisional	98.9
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.89
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.88
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.88
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.88
PRK09669	444	putative symporter YagG; Provisional	98.87
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.87
PF13347	428	MFS_2: MFS/sugar transport protein	98.86
TIGR00893	399	2A0114 d-galactonate transporter.	98.85
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.85
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.82
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.82
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.81
KOG0637	498	consensus Sucrose transporter and related proteins	98.76
TIGR00895	398	2A0115 benzoate transport.	98.75
PRK10429	473	melibiose:sodium symporter; Provisional	98.74
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.74
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.72
PRK11462	460	putative transporter; Provisional	98.69
TIGR00898	505	2A0119 cation transport protein.	98.68
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.68
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.66
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.66
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.65
KOG0569	485	consensus Permease of the major facilitator superf	98.64
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.63
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.57
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.55
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.54
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.54
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.54
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.53
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.53
COG2211	467	MelB Na+/melibiose symporter and related transport	98.49
PF12832	77	MFS_1_like: MFS_1 like family	98.44
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.39
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.37
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.33
COG0477	338	ProP Permeases of the major facilitator superfamil	98.32
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.31
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.29
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.24
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.2
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.19
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.17
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.17
KOG3762	618	consensus Predicted transporter [General function	98.1
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.01
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.93
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.8
KOG2532	466	consensus Permease of the major facilitator superf	97.74
KOG2533	495	consensus Permease of the major facilitator superf	97.71
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.61
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.6
KOG3097	390	consensus Predicted membrane protein [Function unk	97.57
KOG0254	513	consensus Predicted transporter (major facilitator	97.47
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.35
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.86
PF12832	77	MFS_1_like: MFS_1 like family	96.84
PRK15462	493	dipeptide/tripeptide permease D; Provisional	96.82
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.65
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.61
KOG3762	618	consensus Predicted transporter [General function	96.46
KOG3810	433	consensus Micronutrient transporters (folate trans	96.4
KOG2563	480	consensus Permease of the major facilitator superf	96.36
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.32
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	96.29
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.07
PTZ00207	591	hypothetical protein; Provisional	95.85
KOG2615	451	consensus Permease of the major facilitator superf	95.77
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	95.69
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	95.38
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.18
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	94.5
TIGR00805	633	oat sodium-independent organic anion transporter.	94.12
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	93.99
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	92.47
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	92.23
PRK03612	521	spermidine synthase; Provisional	91.78
COG3202	509	ATP/ADP translocase [Energy production and convers	91.12
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	90.58
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	89.15
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	88.36
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	88.25
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	87.6
KOG2325	488	consensus Predicted transporter/transmembrane prot	86.38
PRK11469	188	hypothetical protein; Provisional	86.02
KOG1330	493	consensus Sugar transporter/spinster transmembrane	83.7
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	82.13

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=100.00  E-value=2.7e-34  Score=243.98  Aligned_cols=329  Identities=64%  Similarity=1.079  Sum_probs=289.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhccccccCCCcccccchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHH
Q 018113            4 FFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFG   83 (360)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~   83 (360)
                      +++..+..++++...+|+.++++++..+++.+++.|+..+.+..+....|++++|+...+++++|++..|++.++..++.
T Consensus         1 ~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~f~~Fqr~yl~vY~La~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~   80 (354)
T PF05631_consen    1 FYYLVFGVLAAVCAALELSKRTKDRASTNPAFRRFQRKYLLVYLLAMAADWLQGPYLYALYESYGFSEHQIAILFVAGFA   80 (354)
T ss_pred             CchhHHHHHHHHHHHHheecccccccccChHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHH
Confidence            35677888889999999888877777777888999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhccccchhhHHH
Q 018113           84 SSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWL  163 (360)
Q Consensus        84 ~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~  163 (360)
                      .+.+.+++.|.++||+|||+.-+..+++.++++++-..++++.++++|++.|++.+..+.+-+++++.|+++|+....+.
T Consensus        81 Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L  160 (354)
T PF05631_consen   81 SSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWL  160 (354)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            99999999999999999999999999999999988888999999999999999999999999999999998898888887


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHH
Q 018113          164 SITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAI  243 (360)
Q Consensus       164 ~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (360)
                      ...+......++++-++.++++++.+.+..+.+...||.....+..++..++...|+|+.++.++.++..++.++..+.+
T Consensus       161 ~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i  240 (354)
T PF05631_consen  161 SDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAI  240 (354)
T ss_pred             HHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHH
Confidence            77777666678888889999999998887777778899998888888888887889998877665555566777778889


Q ss_pred             hcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 018113          244 ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVS  323 (360)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~  323 (360)
                      .+||+++.+.....++.+.+|.++..|.|....+..+.+.|.+++.+.+..++|+.+..++..|- .|.+..+.....++
T Consensus       241 ~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~-~~~e~~l~~v~~~a  319 (354)
T PF05631_consen  241 LSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKS-LRPESLLRYVFAVA  319 (354)
T ss_pred             HcCchhHHHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            99999999999999999999999999999988666667779999999999999999998777664 45556677777777


Q ss_pred             HHHHHHhHhc
Q 018113          324 SVSLLLPIVT  333 (360)
Q Consensus       324 ~~~~~~~~~~  333 (360)
                      .+++.++.+.
T Consensus       320 a~~l~~pv~~  329 (354)
T PF05631_consen  320 AVSLAIPVVT  329 (354)
T ss_pred             HHHHHHHHHH
Confidence            7777777665

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.97  E-value=7.4e-31  Score=211.05  Aligned_cols=335  Identities=89%  Similarity=1.424  Sum_probs=302.7

Q ss_pred             CchhHHHHHHHHHHHHHHHhhhccccccCCCcccccchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhCCChhhhHHHHHH
Q 018113            1 MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIA   80 (360)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~   80 (360)
                      |+-+.+..+.++++....+|+.+.++++..++..+.+.+...+.+..+.+..|+.++|++.+++++||....++|.++..
T Consensus         1 MevfyylvFggl~a~vagLELSk~nkdRintsssFnsFknnyllVyslmmAgDWLQgPYvYyLYstYgFgkG~IgqLfia   80 (454)
T KOG4332|consen    1 MEVFYYLVFGGLAAVVAGLELSKCNKDRINTSSSFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGDIGQLFIA   80 (454)
T ss_pred             CeeeehHHHHHHHHHHHHhhhhhcccccccCchhHHHHhhhHHHHHHHHHhhhhhcCceeeeeehhcCccCCccceeeec
Confidence            67788999999999999999999988888888888888888899999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc-cccchh
Q 018113           81 GFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFE  159 (360)
Q Consensus        81 ~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~  159 (360)
                      ++...++.+.+.|.++||-|||+.-+.-++.+.++++.-.++.|-.++++|.+-|++.+..+....+++++|+ ++|++.
T Consensus        81 GfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Fe  160 (454)
T KOG4332|consen   81 GFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFE  160 (454)
T ss_pred             ccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCCh
Confidence            9999999999999999999999998888888888888889999999999999999999999999999999998 689999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHH
Q 018113          160 QQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGA  239 (360)
Q Consensus       160 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (360)
                      ..+....++-....|+.+-++++++.+..+.+..+.+...+|-..+.+..++..+....|.|+.+++.+.++...+.+..
T Consensus       161 qqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~kdlltqf~ga  240 (454)
T KOG4332|consen  161 QQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSENKDLLTQFKGA  240 (454)
T ss_pred             HhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhhHHHHHHhhHh
Confidence            99999999989999999999999999999999999999999988888877777777788999988888888877778888


Q ss_pred             HHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHH
Q 018113          240 AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIV  319 (360)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  319 (360)
                      .+.+..|+++.++.....++...+|.+...|.|....+..+.+.|.+++.+.+..+.|+-+..++..|-..|...+..+.
T Consensus       241 a~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqiv  320 (454)
T KOG4332|consen  241 ARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIV  320 (454)
T ss_pred             HHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHH
Confidence            88899999999999999999999999999999999877777778999999999999999999999888777766777777


Q ss_pred             HHHHHHHHHHhHhccC
Q 018113          320 FVVSSVSLLLPIVTIP  335 (360)
Q Consensus       320 ~~~~~~~~~~~~~~~~  335 (360)
                      +.+....+.++.....
T Consensus       321 f~vs~a~l~Lpilt~~  336 (454)
T KOG4332|consen  321 FLVSIAALLLPILTSS  336 (454)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            7777777777666543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.8e-26  Score=200.87  Aligned_cols=253  Identities=19%  Similarity=0.273  Sum_probs=190.8

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      .+.+|++.+|+|+|..+.|+..+.+..+..+++++...+.||+.||++++....++.++. ++++++||+.++++|++.|
T Consensus        33 ~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g  112 (394)
T COG2814          33 VGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAG  112 (394)
T ss_pred             HhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            677999999999999999999999999999999999999999999999999999999998 8899999999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      +..|..++.... +..+.   ++|++..+......+....    +|..++..++    |.  |+||..|+..+.+.++..
T Consensus       113 ~a~G~f~~i~~~-~a~~lvpp~~~~~Aiaiv~~G~tlA~v----~GvPLGt~ig----~~--~GWR~~F~~ia~l~ll~~  181 (394)
T COG2814         113 LAHGVFWSIAAA-LAARLVPPGKRGRALALVFTGLTLATV----LGVPLGTFLG----QL--FGWRATFLAIAVLALLAL  181 (394)
T ss_pred             HHHHHHHHHHHH-HHHHHcCccchhhHHHHHHHHHHHHHH----HhccHHHHHH----HH--hhHHHHHHHHHHHHHHHH
Confidence            999999988855 66664   6777765555544443333    3333333333    33  678889999988888888


Q ss_pred             HHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHH
Q 018113          213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFAT  289 (360)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  289 (360)
                      .......|+++.+++++.+ .+    +..+++|+|+++.......+...+.+. ..+|...++++..+.+.   +.....
T Consensus       182 ~~~~~~lP~~~~~~~~~~~-~~----~~~~~l~~p~v~~~l~~t~l~~~g~F~-~ftYi~P~L~~v~g~s~~~vs~~Ll~  255 (394)
T COG2814         182 LLLWKLLPPSEISGSLPGP-LR----TLLRLLRRPGVLLGLLATFLFMTGHFA-LYTYIRPFLESVAGFSVSAVSLVLLA  255 (394)
T ss_pred             HHHHHhCCCccCCCCCCcc-hh----HHHHHhcCchHHHHHHHHHHHHcchhh-hHHhHHHHHHHccCCCHhHHHHHHHH
Confidence            8876777711111111111 11    123678999999887777777777777 57777777777777665   577788


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHH
Q 018113          290 FMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLL  329 (360)
Q Consensus       290 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~  329 (360)
                      +++++++|+.++|++.|| +.|+  .+.............
T Consensus       256 ~Gv~~~~Gn~~gGrl~dr-~~~~--~l~~~~~l~a~~~l~  292 (394)
T COG2814         256 FGIAGFIGNLLGGRLADR-GPRR--ALIAALLLLALALLA  292 (394)
T ss_pred             HHHHHHHHHHHHhhhccc-cchh--HHHHHHHHHHHHHHH
Confidence            899999999999999999 6663  344443443433333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.95  E-value=8.1e-26  Score=207.31  Aligned_cols=265  Identities=15%  Similarity=0.202  Sum_probs=173.0

Q ss_pred             hhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhC---CChhh---hHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHH
Q 018113           38 FKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYG---FGKGE---IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT  107 (360)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g---~s~~~---~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~  107 (360)
                      +++..+..+.+....+++|    +...|.+.+|++   .+..+   .+..++..+++..++++++|+++||+|||+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            3444555556667777777    233788888884   45553   3456677777777999999999999999999999


Q ss_pred             HHHHHHHHH-HHHhcchHH--------HHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHH
Q 018113          108 YCLTYILSC-ITKHSPQYK--------ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGN  175 (360)
Q Consensus       108 ~~~~~~~~~-l~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~  175 (360)
                      +.++++++. ++++++++.        .++++|+++|++.|..++.... +++|.   ++|++..+.....    ...|.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~-~i~e~~p~~~rg~~~~~~~~~----~~~G~  173 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSAT-YMSEVAVEGRKGFYASFQYVT----LIGGQ  173 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHH-HHHHhCCCCcccHHHHHHHHH----HHHHH
Confidence            999999977 778888764        5889999999999999898855 88887   5666644333332    33333


Q ss_pred             HHHHHHHhhhhhhhhc--ccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHH
Q 018113          176 GLVAILSGLFGNLLVD--SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLG  253 (360)
Q Consensus       176 ~~g~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (360)
                      .++..+...+...+.+  ...|+||.+|.+.++..++..++. ...||+++.+++    .++.+.+.++++|+++.+...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~-~~~~e~~~~~~~----~~~~~~~~~~l~~~~~~~~~~  248 (432)
T PRK10406        174 LLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLR-RQLDETSQQETR----ALKEAGSLKGLWRNRRAFIMV  248 (432)
T ss_pred             HHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHH-hcCCCCchHHHh----hhcccccHHHHHhhHHHHHHH
Confidence            3333333333322111  124778888987766665543332 333443221111    111122456678888887765


Q ss_pred             HHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          254 AIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      ....+.....++....|.|.|+++..+.+.   +.......+...++..+.|+++||++||+
T Consensus       249 ~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~  310 (432)
T PRK10406        249 LGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT  310 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            555444233333357899998876656554   34455556677788889999999999985

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.95  E-value=3.7e-25  Score=201.42  Aligned_cols=265  Identities=15%  Similarity=0.114  Sum_probs=180.5

Q ss_pred             chhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHH
Q 018113           37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY  112 (360)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~  112 (360)
                      |.+|......++....++++    +...|.+.+|+|+|+++.|++.+..+++..+++++.|+++||+|||+++..+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            44566666777777777776    34488899999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018113          113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL  188 (360)
Q Consensus       113 ~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  188 (360)
                      +++. ++++++|++.+++.|+++|++.+...+.... ++.|+   ++|++..+....    +..    +|..+++.+++.
T Consensus        84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~rg~~~~~~~~----~~~----~g~~~~~~~~~~  154 (412)
T TIGR02332        84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILL-YLTFWFPAYFRARANALFMI----AMP----VTMALGLILSGY  154 (412)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHcCHHHHHHHHHHHHH----HHH----HHHHHHHHHHHH
Confidence            9877 7788999999999999999999998887755 77776   456664443332    223    444444444444


Q ss_pred             hhcc----cCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCC---c-chhHH-HH---------------------HHH
Q 018113          189 LVDS----FSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPS---E-SKDLL-TQ---------------------FRG  238 (360)
Q Consensus       189 l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~-~~---------------------~~~  238 (360)
                      +.+.    ..++||..|.+.+...++...+.....||++++++   + +++.. +.                     .++
T Consensus       155 l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (412)
T TIGR02332       155 ILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRS  234 (412)
T ss_pred             HHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Confidence            4321    12467777877666555444444344455432211   0 00000 00                     001


Q ss_pred             HHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCC-CCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          239 AAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND-EEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      .++++ +++.++.......+.....+. ...|.|.++++. .+.+.   +.......++.+++.+..|+++||+++|+
T Consensus       235 ~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~  310 (412)
T TIGR02332       235 MLREI-FTPAIMLYTLAYFCLTNTLSA-INIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK  310 (412)
T ss_pred             HHHHh-cChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH
Confidence            12222 346666655555554444444 678999998763 34332   45667778889999999999999999775

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.2e-25  Score=193.50  Aligned_cols=266  Identities=15%  Similarity=0.135  Sum_probs=203.8

Q ss_pred             cccchhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHH
Q 018113           34 AFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC  109 (360)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~  109 (360)
                      ..+|+|+.++...++.....++.    +...|.+.+|.++|.+|+|.+.+..++...++..+.|.++||.++|+.+..++
T Consensus        22 ~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gL  101 (448)
T COG2271          22 TYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGL  101 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHH
Confidence            45666777777777777766665    23389999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018113          110 LTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (360)
Q Consensus       110 ~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  185 (360)
                      ++.++.. +.+++++.+.+.++.++.|..+|.-+|.+.. .++.+   +|||..-+..+...+    +|.++.+.+..+ 
T Consensus       102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~-~i~~Wfsr~eRG~~~siWn~shN----iGGal~~~~~~l-  175 (448)
T COG2271         102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCAR-TITHWFSRKERGTWWSIWNTSHN----IGGALAPLVALL-  175 (448)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHcCccccCceEEEehhhhh----cccchHHHHHHH-
Confidence            9999977 8899999999999999999999999999967 66655   889986666665555    444333333311 


Q ss_pred             hhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCC----------CCcchh-H-------HHHHHHHHHHHhcch
Q 018113          186 GNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD----------PSESKD-L-------LTQFRGAAVAIASDE  247 (360)
Q Consensus       186 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~-------~~~~~~~~~~~~~~~  247 (360)
                       +.+.++  ++||..|+..++++++..++.....++++++          +|+.+. .       ....+.-.+.+++||
T Consensus       176 -a~~~~~--~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk  252 (448)
T COG2271         176 -AFFAFH--GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNK  252 (448)
T ss_pred             -HHHHhc--cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcCh
Confidence             444444  3677889888887777666665444433221          011110 0       011112345789999


Q ss_pred             hHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcC
Q 018113          248 KIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSP  309 (360)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g  309 (360)
                      .+|.+++...+....-+. +..|.|.|+.|..|.+.   +...+.+-.++++|++++|+++||.-
T Consensus       253 ~iW~la~a~vfvYivR~g-i~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklf  316 (448)
T COG2271         253 LIWLLALANVFVYVVRYG-INDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLF  316 (448)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            999999999999988888 69999999988877766   57778889999999999999999984

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=2.4e-24  Score=195.12  Aligned_cols=237  Identities=16%  Similarity=0.197  Sum_probs=167.2

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      .+.+|.+.+|+|.|+++.|+..+...++..+++++.|.++||+|||+++..+..+.+++. .+.+++|++.++++|+++|
T Consensus        29 ~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G  108 (390)
T PRK03545         29 VGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIA  108 (390)
T ss_pred             HcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            466899999999999999999999998888999999999999999999999999999887 7788999999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      ++.+...+...+ ++.|.   ++|++..+....        +..+|..+++.+++.+.+..  +||..|++.+.+.++..
T Consensus       109 ~~~~~~~~~~~~-~i~~~~~~~~r~~~~g~~~~--------~~~~g~~ig~~l~~~l~~~~--gw~~~f~~~~~~~~l~~  177 (390)
T PRK03545        109 FAHAIFWSITAS-LAIRVAPAGKKAQALSLLAT--------GTALAMVLGLPLGRVIGQYL--GWRTTFLAIGGGALITL  177 (390)
T ss_pred             HHHHHHHHHHHH-HHHHhCChhhhhhHHHHHHH--------HHHHHHHHHhhHHHHHHHHh--cHHHHHHHHHHHHHHHH
Confidence            999888777755 66665   566664443332        33345555555555555544  45566777666555554


Q ss_pred             HHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHH
Q 018113          213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFAT  289 (360)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  289 (360)
                      .......||++++++   +..    ++.++.+|+|+++.......+.....+. ...+.+.+.+++.+.+.   +.....
T Consensus       178 ~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~s~~~~~~~~~~  249 (390)
T PRK03545        178 LLLIKLLPLLPSEHS---GSL----KSLPLLFRRPALVSLYLLTVVVVTAHFT-AYSYIEPFVQQVAGLSENFATLLLLL  249 (390)
T ss_pred             HHHHHhCCCCCCCCc---chH----HHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            444333343322111   111    2344678888877654444443333333 34566666666555444   456677


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCh
Q 018113          290 FMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       290 ~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      ..++++++++..+++.||+++|+
T Consensus       250 ~~~~~~~g~~~~g~l~dr~~~~~  272 (390)
T PRK03545        250 FGGAGIIGSVLFSRLGNRHPSGF  272 (390)
T ss_pred             HHHHHHHHHHHHHHHhhccchhH
Confidence            78889999999999999998774

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.94  E-value=5.1e-24  Score=198.47  Aligned_cols=275  Identities=16%  Similarity=0.077  Sum_probs=185.3

Q ss_pred             HHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHH
Q 018113           40 NNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS  115 (360)
Q Consensus        40 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~  115 (360)
                      |..+....+..+...+|    +..+|.+.+|+|.+.++.+++.+.+.++.....++.|+++||+|||++++.+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~   84 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA   84 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            44555566666666666    34499999999999999999999999988889999999999999999999999999998


Q ss_pred             H-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 018113          116 C-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD  191 (360)
Q Consensus       116 ~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~  191 (360)
                      + ++++++|++.++++|+++|++.+...+.....+..+.   ++|++..+....        +..+|..++|.+++.+.+
T Consensus        85 ~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~--------~~~~g~~~gp~lgg~l~~  156 (495)
T PRK14995         85 SLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAA--------VGSGGAAFGPLVGGILLE  156 (495)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhc
Confidence            7 8899999999999999999999988776645232332   455553333222        233566667777777776


Q ss_pred             ccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHH-----------------------------------
Q 018113          192 SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQF-----------------------------------  236 (360)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  236 (360)
                      +.+|  |+.|++...+.++..++.....|+++++++++.+.....                                   
T Consensus       157 ~~gw--r~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (495)
T PRK14995        157 HFYW--GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGAL  234 (495)
T ss_pred             cCCh--HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence            6554  456776665555555444344454432222111110000                                   


Q ss_pred             ------HHH--------HHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHH
Q 018113          237 ------RGA--------AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSS  299 (360)
Q Consensus       237 ------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  299 (360)
                            ..+        ..+++|+|.+........+.....+. ...+.|.|+++..+.++   +.......++..++.+
T Consensus       235 ~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~  313 (495)
T PRK14995        235 LLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVG-FELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGP  313 (495)
T ss_pred             HHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                  000        01456677666554444444344444 46678888887666665   5666777888999999


Q ss_pred             HHHHHHhhcCCChhhHHHHHHHHHHHHH
Q 018113          300 LASRLMARSPPRVESYMQIVFVVSSVSL  327 (360)
Q Consensus       300 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~  327 (360)
                      +.|++.||+|+|+  .+..+..+..+..
T Consensus       314 ~~g~l~~r~g~~~--~~~~g~~~~~~~~  339 (495)
T PRK14995        314 IAGILVSRLGLRL--VATGGMALSALSF  339 (495)
T ss_pred             HHHHHHHHcCchH--HHHHHHHHHHHHH
Confidence            9999999999874  4444444444333

>PRK10133 L-fucose transporter; Provisional

Probab=99.94  E-value=4.3e-24  Score=195.48  Aligned_cols=263  Identities=12%  Similarity=0.122  Sum_probs=170.6

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HH---HhcchHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKILMIGRI  132 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~---~~~~~~~~l~~~r~  132 (360)
                      .+..|.+++++|+|+++.|+..+...++..+.+++.|++.||+|||+++..+..+.+++. ++   ..+++++.++++|+
T Consensus        46 ~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~  125 (438)
T PRK10133         46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF  125 (438)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            567999999999999999999999999999999999999999999999999999999977 43   46899999999999


Q ss_pred             HHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------------hc-ccCC
Q 018113          133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLL-------------VD-SFSL  195 (360)
Q Consensus       133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l-------------~~-~~~~  195 (360)
                      ++|++.+...+...+ ++.|.   ++|+...+..+....    +|..+|+.+++.+....             .+ ..+|
T Consensus       126 l~G~g~g~~~~~~~~-~v~~~~~~~~~~~~~s~~~~~~~----~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w  200 (438)
T PRK10133        126 IIAAGLGCLETAANP-FVTVLGPESSGHFRLNLAQTFNS----FGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAY  200 (438)
T ss_pred             HHHHHHHHHHhhHHH-HHHHhCChhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHH
Confidence            999999999888866 66665   222222333333333    44444444443322000             00 0123


Q ss_pred             ------CCchhhhhhH-HHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHH
Q 018113          196 ------GPVAPFDAAA-CFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVF  268 (360)
Q Consensus       196 ------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (360)
                            +|+.+|.... ...++..+......||.++++++ ++..++..+..++++++|+++...+...+.....+. ..
T Consensus       201 ~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~  278 (438)
T PRK10133        201 KHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS-DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTA-CW  278 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-cccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHH-HH
Confidence                  3555665433 22222222222334442221111 111112223445778888887665555554444444 45


Q ss_pred             hhhcccc-CCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 018113          269 LWTPALS-PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLL  328 (360)
Q Consensus       269 ~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  328 (360)
                      .|.+.|. ++..+.++   +.......++.+++++..+++.||+++|+  .+..+..+....+.
T Consensus       279 ~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~--~l~~~~~~~~~~~~  340 (438)
T PRK10133        279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--VLAAYALIAMALCL  340 (438)
T ss_pred             HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHHH
Confidence            6777774 55566665   56678888999999999999999999884  34444444433333

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.94  E-value=3.4e-24  Score=195.14  Aligned_cols=267  Identities=15%  Similarity=0.087  Sum_probs=172.9

Q ss_pred             ccchhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHH
Q 018113           35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL  110 (360)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~  110 (360)
                      +++++|+.+..+.+....++++    .+..|.+.+++|.|+++.+++.+...++..+++++.|.++||+|||+++..+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            4556677777777777777776    466899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018113          111 TYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG  186 (360)
Q Consensus       111 ~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  186 (360)
                      +.+++. ++.++++++.+++.|++.|++.+..++.... ++.|.   ++|++..+....        +..+|..+++.++
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~--------~~~~g~~~~~~l~  156 (405)
T TIGR00891        86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAA-YVIESWPKHLRNKASGLLIS--------GYAVGAVVAAQVY  156 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHH-HHHHhCChhhhhHHHHHHHH--------HHHHHHHHHHHHH
Confidence            888877 7788999999999999999999998887755 77775   556554333332        2234445555555


Q ss_pred             hhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcch--h-HHHHHHH---H---HHH--------H----hc
Q 018113          187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESK--D-LLTQFRG---A---AVA--------I----AS  245 (360)
Q Consensus       187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~---~---~~~--------~----~~  245 (360)
                      +.+.+..+.+|+..+.+.....++..... ...||+++.+++++  + ..+..++   .   .++        .    .+
T Consensus       157 ~~l~~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (405)
T TIGR00891       157 SLVVPVWGDGWRALFFISILPIIFALWLR-KNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGK  235 (405)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHHHHHH-HhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhh
Confidence            55444444346677766544444333322 34454332111100  0 0000000   0   000        0    00


Q ss_pred             chh-HHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          246 DEK-IALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       246 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      ++. +........+..... .....+.|.|..++.+.+.   +.......++.++++++.+++.||++||+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~  305 (405)
T TIGR00891       236 RWPTFVYLVVLVLFANLYS-HPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK  305 (405)
T ss_pred             hhHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence            111 111111111111222 2245667877766555554   45667778889999999999999999985

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.94  E-value=1.5e-24  Score=195.35  Aligned_cols=257  Identities=14%  Similarity=0.059  Sum_probs=168.1

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      .++.|.+.+|+|+|+++.|++.+...++..+++++.|+++||+|||+++..+.++.+++. +++++++++.++++|++.|
T Consensus        23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  102 (377)
T TIGR00890        23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLAS  102 (377)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            577999999999999999999999999999999999999999999999999999998877 7789999999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV  213 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  213 (360)
                      ++.+..++.... .+.|+  ++|++..+...        .+..+|..+++.+...+.+.  ++||..|.+.+.+.++...
T Consensus       103 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~  171 (377)
T TIGR00890       103 AGVGIAYGIALN-TAVKWFPDKRGLASGIII--------GGYGLGSFILSPLITSVINL--EGVPAAFIYMGIIFLLVIV  171 (377)
T ss_pred             HHHHHHHHhHHH-HHHHHcCcccHHHHHHHH--------HhcchhHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHH
Confidence            999987776655 56654  55655333322        23334444444444444443  3566677766655554444


Q ss_pred             HHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHH
Q 018113          214 IILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATF  290 (360)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  290 (360)
                      ......++++++++++++..++...+.++.+|+++.+.......+....... ...+.+.|.++ .+.+.   +......
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~  249 (377)
T TIGR00890       172 LGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLL-LIGLYKPYGQS-LGLSDGFLVLAVSIS  249 (377)
T ss_pred             HHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHH-HHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence            3322222222111111110111112345677888877665544443333333 23444555443 33333   4566777


Q ss_pred             HHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 018113          291 MLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLL  328 (360)
Q Consensus       291 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  328 (360)
                      .++.+++++..+++.||++||+  .+..+.....+...
T Consensus       250 ~~~~~~~~~~~g~l~dr~g~~~--~~~~~~~~~~~~~~  285 (377)
T TIGR00890       250 SIFNGGGRPFLGALSDKIGRQK--TMSIVFGISAVGMA  285 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHH
Confidence            8889999999999999999884  34444444444333

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.94  E-value=5.8e-24  Score=197.95  Aligned_cols=267  Identities=20%  Similarity=0.217  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhh----hHH--HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHH
Q 018113           40 NNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGE----IGQ--LFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC  109 (360)
Q Consensus        40 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~----~g~--~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~  109 (360)
                      +..+..+.+..+.+++|    +...|.+.++++.+.++    ++.  .++..+++..+++++.|+++||+|||+++..+.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            34555667777888888    23478888888644322    222  256777888899999999999999999999999


Q ss_pred             HHHHHHH-HHHhcchHHH--------HHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHH
Q 018113          110 LTYILSC-ITKHSPQYKI--------LMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGL  177 (360)
Q Consensus       110 ~~~~~~~-l~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~  177 (360)
                      ++++++. ++++++|+..        ++++|+++|++.|..++.... +++|+   ++|++..+......    .+|..+
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~-~~~e~~p~~~Rg~~~~~~~~~~----~~G~~l  169 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASI-FVAEYSPDRKRGFMGSWLDFGS----IAGFVL  169 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHH-HHHHhCCCCCCcHHHHHHHHHH----HHHHHH
Confidence            9999987 8899999874        789999999999999998855 88887   56777544443333    334434


Q ss_pred             HHHHHhhhhhhhhc--ccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcch---h-HH----HHHHHHHHHHhc-c
Q 018113          178 VAILSGLFGNLLVD--SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESK---D-LL----TQFRGAAVAIAS-D  246 (360)
Q Consensus       178 g~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~----~~~~~~~~~~~~-~  246 (360)
                      |..+...+...+.+  ...|+||..|++...+.++..++. ...||++...++.+   + ..    ++.+.+.+++++ +
T Consensus       170 g~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (490)
T PRK10642        170 GAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLR-HALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKH  248 (490)
T ss_pred             HHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHH-HcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHh
Confidence            44443333332211  124778888888765555433332 34454321100000   0 00    000112333443 3


Q ss_pred             hhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          247 EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      ++.+.......+.....++....|.|.|+++..+.+.   ........++.+++.+..|+++||+|||+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  317 (490)
T PRK10642        249 WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP  317 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            3333333333232333344457789998876555544   34445557778889999999999999995

>PRK15075 citrate-proton symporter; Provisional

Probab=99.93  E-value=6.4e-24  Score=194.86  Aligned_cols=268  Identities=17%  Similarity=0.242  Sum_probs=169.5

Q ss_pred             hHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHH-HH-----HHHHHhhhhhhhhhhhhhhcchHHHHHH
Q 018113           39 KNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLF-IA-----GFGSSMLFGTIVGSLADKQGRKRACVTY  108 (360)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~-~~-----~~~~~~~~~~~~G~l~Dr~Grr~~l~~~  108 (360)
                      +++.....++..+.+.+|    ++..|.+.+|++.++.+.+... +.     .++...+++++.|+++||+|||++++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            344566677778888888    4559999999999888765432 22     2333346778899999999999999999


Q ss_pred             HHHHHHHH-HHHhcchHH--------HHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHH
Q 018113          109 CLTYILSC-ITKHSPQYK--------ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNG  176 (360)
Q Consensus       109 ~~~~~~~~-l~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~  176 (360)
                      ..+.+++. +++++++++        .++++|+++|++.+...+.... +++|.   ++|++..+......+.+..+|..
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~-~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~  171 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSV-YLAEIATPGRKGFYTSWQSASQQVAVVFAAL  171 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHH-HHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            99998877 888898877        4688999999999988787744 88886   67787666655555544444444


Q ss_pred             HHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHH
Q 018113          177 LVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQ  256 (360)
Q Consensus       177 ~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (360)
                      +|..+.+.+.+...+  .++||.+|........+ ........||+++..++  +..++.++..++..++++.+......
T Consensus       172 ~g~~l~~~~~~~~~~--~~gWr~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (434)
T PRK15075        172 LGYLLNQWLSPAQMA--EWGWRIPFLIGCLIVPF-IFLIRRSLEETEEFLAR--KHRPSMREIFRSLAANWRIVLAGMLM  246 (434)
T ss_pred             HHHHHHHhCCHHHHh--ccchHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHh--hhccccccHHHHHHHhHHHHHHHHHH
Confidence            444444433333223  35677777664333222 11111122221110000  00001111233344555555443333


Q ss_pred             HHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          257 SLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      .+.....+.....|.|.|+++..+.+.   +.......++++++.++.|+++||+|||+
T Consensus       247 ~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~  305 (434)
T PRK15075        247 VAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP  305 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            333333444467889999887656554   34455667888899999999999999985

>PRK09952 shikimate transporter; Provisional

Probab=99.93  E-value=9e-24  Score=193.91  Aligned_cols=263  Identities=19%  Similarity=0.135  Sum_probs=161.6

Q ss_pred             hHHHHHHHHHHHHHhhhhh----HHHHH-HHHhh--CCChhhhHHHH-----HHHHHHHhhhhhhhhhhhhhhcchHHHH
Q 018113           39 KNNYLLVYSLMMAGDWLQG----PYVYY-LYSTY--GFGKGEIGQLF-----IAGFGSSMLFGTIVGSLADKQGRKRACV  106 (360)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~--g~s~~~~g~~~-----~~~~~~~~~~~~~~G~l~Dr~Grr~~l~  106 (360)
                      +++.....++....|++|.    ...|. +.+++  +.++. .+.+.     ...+++..+++++.|+++||+|||+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~   98 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence            3456666777778888882    23443 44555  67666 35442     3556666788889999999999999999


Q ss_pred             HHHHHHHHHH-HHHhcchHH--------HHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHH
Q 018113          107 TYCLTYILSC-ITKHSPQYK--------ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLG  174 (360)
Q Consensus       107 ~~~~~~~~~~-l~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g  174 (360)
                      .+.++++++. ++++++++.        .++++|+++|++.|..++.... ++.|.   ++|++..+....        |
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~-~~~e~~p~~~rg~~~~~~~~--------g  169 (438)
T PRK09952         99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAAL-LAVESAPKNKKAFYSSGVQV--------G  169 (438)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH-HHHHhCCCCCCcHHHHHHHH--------H
Confidence            9999999987 889999987        5888999999999999888755 88887   555553333322        2


Q ss_pred             HHHHHHHHhhhhhhhhc------ccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchh--HHHHHHHHHHHHhcc
Q 018113          175 NGLVAILSGLFGNLLVD------SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKD--LLTQFRGAAVAIASD  246 (360)
Q Consensus       175 ~~~g~~~~~~l~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  246 (360)
                      ..+|..++..+...+..      ...|+||.+|.+.++..++..+.. ...||+++..+++++  ..++..+..+.++++
T Consensus       170 ~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~-~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~  248 (438)
T PRK09952        170 YGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVR-NGMEESAEFEQQQHEQAAAKKRIPVIEALLRH  248 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHH-HhCCCChhHHHHHhhcccccccCCHHHHHHHc
Confidence            22333333322222211      124778888887766554433222 233333211010000  000001122345677


Q ss_pred             hhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcchh---HHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          247 EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      |+.+.......+.....++....|.|.|.++..+.+..   .......+..+++.++.|+++||+|||+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~  317 (438)
T PRK09952        249 PGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR  317 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence            77766544333333333333567888888776666654   2333445667788889999999999985

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.93  E-value=1.8e-24  Score=200.36  Aligned_cols=268  Identities=18%  Similarity=0.061  Sum_probs=177.9

Q ss_pred             ccchhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHH
Q 018113           35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL  110 (360)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~  110 (360)
                      ..|..+..+..+++.......+    ++..|.+.+|+|+|+++.|++.+...++..+++++.|+++||+|||+++..+.+
T Consensus        23 ~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~  102 (467)
T PRK09556         23 WFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI  102 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence            3344455555566665555555    455899999999999999999999999999999999999999999999988887


Q ss_pred             HHHHHH-HH-----HhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHH
Q 018113          111 TYILSC-IT-----KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAIL  181 (360)
Q Consensus       111 ~~~~~~-l~-----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~  181 (360)
                      +.++.. ..     +.+++++.+++.|+++|++.+...+.... +++|+   ++|++..+......+        +|..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~i~~~~~~~~rg~a~gi~~~~~~--------lG~~l  173 (467)
T PRK09556        103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYS-TITRWTPRRKRGRFLGFWNISHN--------LGGAG  173 (467)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHH-HHHHHcCccceeeeEEeeecccc--------hhhhH
Confidence            776644 33     34689999999999999999988887755 78876   568886655444333        33344


Q ss_pred             Hhhhhhhhhccc-CCCCchhhhhhHHHHHHHHHHHhhh---hccccCCCC------cc---hhH---HHH--HHH-HHHH
Q 018113          182 SGLFGNLLVDSF-SLGPVAPFDAAACFLAIGMVIILSS---WTENYGDPS------ES---KDL---LTQ--FRG-AAVA  242 (360)
Q Consensus       182 ~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~---~~~---~~~--~~~-~~~~  242 (360)
                      ++.+..++.+.. +.+|+..|...+.+.++..+.....   .||+.+..+      +.   ++.   .++  ..+ ..+.
T Consensus       174 ~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (467)
T PRK09556        174 AGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEY  253 (467)
T ss_pred             HHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHH
Confidence            444333333321 1135555655444443332222222   222211000      00   000   000  011 1223


Q ss_pred             HhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          243 IASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      .+|+|.++...+...+.....+. ...|.|.|+++..+.+.   +.......++.++++++.|+++||+++|+
T Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~  325 (467)
T PRK09556        254 VLKNPVIWLLCFANIFLYIVRIG-IDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR  325 (467)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            68899999887776666655555 68899999987777765   35556677889999999999999999885

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.93  E-value=2.5e-23  Score=188.33  Aligned_cols=235  Identities=17%  Similarity=0.226  Sum_probs=162.8

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      .+.+|.+.+|+|.++++.|...+...+...+++++.|+++||+|||+++..+.++.+++. ++.++++++.+++.|+++|
T Consensus        40 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  119 (394)
T PRK10213         40 VSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLG  119 (394)
T ss_pred             HhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999999999999999999999999877 7788899999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      ++.+...+.... ++.|.   ++|++..+.....        ..+|..+++.+++.+.+.  ++|+..|+..+.+.++..
T Consensus       120 ~~~g~~~~~~~~-~i~~~~~~~~~~~a~~~~~~~--------~~~g~~ig~~l~~~l~~~--~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        120 LALGGFWAMSAS-LTMRLVPPRTVPKALSVIFGA--------VSIALVIAAPLGSFLGEL--IGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             HhhHHHHHHHHH-HHHHHcCHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHH
Confidence            999998887755 77776   4455533333322        224555555555555554  455667776665555444


Q ss_pred             HHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhh-ccccCCCCCcch---hHHHH
Q 018113          213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWT-PALSPNDEEIPH---GFIFA  288 (360)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~  288 (360)
                      +......||+++++++.   .    ++..+.+|+|+++.......+.....+. ...+. |.|.+ +.+.+.   +....
T Consensus       189 l~~~~~~p~~~~~~~~~---~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~-~~g~s~~~~g~~~~  259 (394)
T PRK10213        189 FWIIKSLPSLPGEPSHQ---K----QNTFRLLQRPGVMAGMIAIFMSFAGQFA-FFTYIRPVYMN-LAGFGVDGLTLVLL  259 (394)
T ss_pred             HHHHHHCCCCCcccccc---h----hHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-hcCCChhHHHHHHH
Confidence            44333345433211111   1    1233567888887765544444443333 24454 55554 334444   56667


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCC
Q 018113          289 TFMLASMLGSSLASRLMARSPPR  311 (360)
Q Consensus       289 ~~~~~~~~~~~~~g~l~dr~g~~  311 (360)
                      ...++.+++..+.+++.||.+++
T Consensus       260 ~~~~~~iig~~~~~~l~~r~~~~  282 (394)
T PRK10213        260 SFGIASFVGTSLSSFILKRSVKL  282 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhccchh
Confidence            77888999999999999995433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.93  E-value=1.3e-23  Score=190.03  Aligned_cols=242  Identities=14%  Similarity=0.098  Sum_probs=172.7

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      .|..|.+.+|+|.|+++.+++.+...++..+++++.|+++||+|||+++..+.++.+++. +..++++++.+.+.|++.|
T Consensus        25 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  104 (385)
T TIGR00710        25 LPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQA  104 (385)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            577899999999999999999999999999999999999999999999999999888877 7788899999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      ++.+...+.... ++.|.   ++|++..+.....    ..    +|..+++.+++.+.+.  ++|+..+...+.+.++..
T Consensus       105 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~----~g~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~~~  173 (385)
T TIGR00710       105 FGASAGSVISQA-LVRDIYPGEELSRIYSILMPV----LA----LAPAVAPLLGGYILVW--LSWHAIFAFLSLAGILLS  173 (385)
T ss_pred             cchhHHHHHHHH-HHHHhcCcHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHH
Confidence            999988787755 77776   4455533333322    22    4445555555555554  345666766655555444


Q ss_pred             HHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHH
Q 018113          213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFAT  289 (360)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  289 (360)
                      .......||+++++++.  ..++..+..++.+|+|+++...+...+.....+. ...+.|.+.++..+.++   +.....
T Consensus       174 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~~  250 (385)
T TIGR00710       174 ALIFFILPETLPYEARI--QISTYFETFLLLLKSKMFWGYALIYGASFGGFFA-FFSGAPFVYIDIMGVSPSVFGLLFAL  250 (385)
T ss_pred             HHHHHhCCCCCCCcccC--CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH-HHHcChHHHHHHcCCCHHHHHHHHHH
Confidence            44434445543332221  1222334556778899888776655554444444 45667777765555554   456667


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCh
Q 018113          290 FMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       290 ~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      ..++.++++++.+++.||+++|+
T Consensus       251 ~~~~~~~~~~~~g~l~~~~~~~~  273 (385)
T TIGR00710       251 NIIAMIFGGFLNGRFIKKWGAKS  273 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHH
Confidence            78889999999999999999885

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.93  E-value=1.6e-23  Score=189.62  Aligned_cols=237  Identities=16%  Similarity=0.180  Sum_probs=161.9

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      +|.+|.+.+|+|+|.++.|++.+...++..+++++.|+++||+|||+++..+..+.+++. ++++++|++.+++.|+++|
T Consensus        29 ~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~G  108 (393)
T PRK09705         29 GPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGG  108 (393)
T ss_pred             chhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHH
Confidence            677999999999999999999999999999999999999999999999999999999988 8899999999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV  213 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  213 (360)
                      ++.+...+.... ++.|+  ++|++..    .....+...|..+|+.+++.+    .++. .+||..+...+...++...
T Consensus       109 ig~~~~~~~~~~-~~~~~~~~~~~~~~----g~~~~~~~~g~~~g~~~~~~l----~~~~-~~w~~~~~~~~~~~~~~~~  178 (393)
T PRK09705        109 VGIGIIQAVMPS-VIKRRFQQRTPLVM----GLWSAALMGGGGLGAAITPWL----VQHS-ETWYQTLAWWALPAVVALF  178 (393)
T ss_pred             hHHHHHhhhhhH-HHHHHccccchhHH----HHHHHHHHHHHHHHHHHHHHH----HHhc-CCHHHHHHHHHHHHHHHHH
Confidence            999988777644 66665  4555533    333333344444555555443    3332 1344444333222222222


Q ss_pred             HHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHH
Q 018113          214 IILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATF  290 (360)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  290 (360)
                      ..... .+++++++++++      ...++.+++++.+.......+.....+. ...|.|.|.++ .+.+.   +...+..
T Consensus       179 ~~~~~-~~~~~~~~~~~~------~~~~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~lp~~l~~-~g~s~~~ag~~~~~~  249 (393)
T PRK09705        179 AWWWQ-SAREVASSHKTT------TTPVRVVFTPRAWTLGVYFGLINGGYAS-LIAWLPAFYIE-IGASAQYSGSLLALM  249 (393)
T ss_pred             HHHHH-hcCCCccccCCC------cCCcccccCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-cCCChhhhhHHHHHH
Confidence            22111 111111111111      0112345677777665555544444434 57788888876 45544   5677788


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCh
Q 018113          291 MLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       291 ~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      .++.+++++..+++.||+++|+
T Consensus       250 ~i~~i~g~~~~g~l~~r~~~~~  271 (393)
T PRK09705        250 TLGQAAGALLMPAMARHQDRRK  271 (393)
T ss_pred             HHHHHHHHHHHHHHHhhccchH
Confidence            8999999999999999999884

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.93  E-value=2.3e-23  Score=186.17  Aligned_cols=237  Identities=16%  Similarity=0.133  Sum_probs=158.0

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCIT-KHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l~-~~~~~~~~l~~~r~l~G  135 (360)
                      +|.+|.+.+|+|+|+++.|++.+..+++..+++++.|+++||+|||+++..+......+.+. ...+|+..+++.|+++|
T Consensus        11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G   90 (368)
T TIGR00903        11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAA   90 (368)
T ss_pred             HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            57799999999999999999999999999999999999999999998876555444444433 33479999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      ++.+.. ..... .++|+   ++|++..+....        +..+|..+++.++..+.+.  ++||..|...+.+.++..
T Consensus        91 ~g~~~~-~~~~~-~~~~~~~~~~r~~a~~~~~~--------~~~lG~~l~~~~~~~l~~~--~gWr~~f~~~~~l~~~~~  158 (368)
T TIGR00903        91 LGQPFL-LNAFA-PAASQIREERRDLVISLLSF--------AMYLGIIFALAAGLKIYTA--GGLQLLIIPIAAVAAAGI  158 (368)
T ss_pred             hHhHHH-HHHHH-HHHHHcCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHH
Confidence            999864 43334 44664   566664333332        3335555666666655554  456677777666655555


Q ss_pred             HHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch--hHHHHHH
Q 018113          213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH--GFIFATF  290 (360)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  290 (360)
                      ++.....||+++++++..+ .++..++.++++|||.++.......+.....+. ..+|.|.|+++. +.+.  +......
T Consensus       159 ~~~~~~lp~~p~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-~~~wlp~~L~~~-g~s~~~~~~~~l~  235 (368)
T TIGR00903       159 ILVLAALPALPFQAAEGFG-FKDAVKEFGALAGRKDLWIIGAILGFGVALFDN-LAIWLEAALRPA-GLEDIAGDAVALA  235 (368)
T ss_pred             HHHHHHcCCCCCCCCCCcc-hHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC-CCChHHHHHHHHH
Confidence            5444556665433222111 112223466889999999988777777766666 588999999763 3443  2233333


Q ss_pred             HHHHHHHHHHHHHHHhhcCCC
Q 018113          291 MLASMLGSSLASRLMARSPPR  311 (360)
Q Consensus       291 ~~~~~~~~~~~g~l~dr~g~~  311 (360)
                      .+   .+.+..++++||..||
T Consensus       236 ~~---~g~~g~~~~~d~~~r~  253 (368)
T TIGR00903       236 IL---AGLIGVAVIPDRVARA  253 (368)
T ss_pred             HH---HHHHHHHHhhHHhhhh
Confidence            33   3444457888887654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.93  E-value=2.6e-23  Score=192.56  Aligned_cols=247  Identities=15%  Similarity=0.098  Sum_probs=165.0

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      .|+.|.+.+|+|+|.++.+.+.+...++..+++++.|+++||+|||+++..+.+..+++. +++++++++.++++|++.|
T Consensus        56 ~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G  135 (476)
T PLN00028         56 APLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIG  135 (476)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            577899999999999999998888888888888999999999999999999988888877 6788999999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc---cCCCCchhhhhhHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS---FSLGPVAPFDAAACFLA  209 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~  209 (360)
                      ++.+... .... +++|+   ++|+...+.....    ..+|..++..+.+.+...+.+.   ...+||..|.+.+.+.+
T Consensus       136 ~~~~~~~-~~~~-~i~~~~~~~~rg~a~g~~~~~----~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l  209 (476)
T PLN00028        136 FSLATFV-SCQY-WMSTMFNGKIVGTANGIAAGW----GNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHI  209 (476)
T ss_pred             HHHHhhH-HHHH-HHHHhcChhheeHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Confidence            9887653 3323 56675   5677754443332    2344445555555444332221   01356677777666555


Q ss_pred             HHHHHHhhhhccccCCCC--c----chhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch
Q 018113          210 IGMVIILSSWTENYGDPS--E----SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH  283 (360)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (360)
                      +..+... ..++++++.+  +    .+...++..+..++.+++++++.......+.....+. ...+.|.|+.+..+.+.
T Consensus       210 ~~~l~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~  287 (476)
T PLN00028        210 IMGILVL-TLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELT-MDNIIAEYFYDRFGLSL  287 (476)
T ss_pred             HHHHHHH-HHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHH-HHhHHHHHHHHhcCCCH
Confidence            4444432 2222221110  0    0000111123345667888888766655444333333 46778888766666655


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018113          284 ---GFIFATFMLASMLGSSLASRLMARSPPR  311 (360)
Q Consensus       284 ---~~~~~~~~~~~~~~~~~~g~l~dr~g~~  311 (360)
                         +...+...++.++++++.|+++||++||
T Consensus       288 ~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        288 ETAGAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence               4566677888999999999999999865

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.93  E-value=3.8e-23  Score=188.43  Aligned_cols=261  Identities=20%  Similarity=0.211  Sum_probs=173.6

Q ss_pred             cchhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHH
Q 018113           36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT  111 (360)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~  111 (360)
                      .+++|..+..++...+.++++    ++..|.+.+|+|.|+++.|++.+...++..+++++.|+++||+|||+++..+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL   89 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            457777777777777777776    4558999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018113          112 YILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN  187 (360)
Q Consensus       112 ~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  187 (360)
                      ..++. ++.++++++.+++.|++.|++.+...+.... ++.|.   ++|++..+....        +..+|..+++.++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~--------~~~~g~~~~~~~~~  160 (406)
T PRK11551         90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIA-LTSEAVGPRLRGTAVSLMYC--------GVPFGGALASVIGV  160 (406)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHcCHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence            88876 7788899999999999999999988877755 77776   456664433322        23345555555555


Q ss_pred             hhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCc--chhHHHHHHHHHHHHhc---chhHHHHHHHHHHHHhh
Q 018113          188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSE--SKDLLTQFRGAAVAIAS---DEKIALLGAIQSLFEGS  262 (360)
Q Consensus       188 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  262 (360)
                      .+.+.  ++|+..+++.+.+.++.........||+++++++  +++..++.   .+...+   +++.+.......+... 
T Consensus       161 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-  234 (406)
T PRK11551        161 LAAGD--AAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPV---LRALFGEGRATATLLLWISYFFTLI-  234 (406)
T ss_pred             HHccc--cCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhh---HHHHhhhhhhhHHHHHHHHHHHHHH-
Confidence            44443  4566667665554444433332334443221111  11111111   111222   2222222222222222 


Q ss_pred             HHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          263 MYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      .......|.|.+.++. +.+.   +.......++.++++++.|++.||+++|+
T Consensus       235 ~~~~~~~~~p~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  286 (406)
T PRK11551        235 VLYFLLNWLPSLLVGQ-GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR  286 (406)
T ss_pred             HHHHHHHHHHHHHHhC-CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            2233566788887653 4433   56677778899999999999999999885

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.93  E-value=3.8e-23  Score=185.49  Aligned_cols=259  Identities=14%  Similarity=0.118  Sum_probs=176.4

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc
Q 018113           43 LLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS  121 (360)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~  121 (360)
                      ....++..+.++...+.+|.+.+|++.++.+.|++.+...++..+.+++.|+++||+|||+++..+.++.+++. +..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   84 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV   84 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            34445555556666677888999999999999999999999999999999999999999999999988887765 55555


Q ss_pred             c-----hHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 018113          122 P-----QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF  193 (360)
Q Consensus       122 ~-----~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~  193 (360)
                      +     +++.+++.|++.|++.+...+...+ ++.|.   ++|++..+......    .    +|..+++.+++.+.+..
T Consensus        85 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~----~g~~~g~~l~~~l~~~~  155 (365)
T TIGR00900        85 ALLGGLNIWQVYVLAGILAIAQAFFTPAYQA-MLPDLVPEEQLTQANSLSQAVR----S----LFYIVGPGIGGLMYATL  155 (365)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHhHHHHHH----H----HHHHHHHHHHHHHHHHh
Confidence            5     8999999999999999988887755 77776   45555433333322    2    44455555555555544


Q ss_pred             CCCCchhhhhhHHHHHHHHHHHh-hhhccccCCCCcc-h-hHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhh
Q 018113          194 SLGPVAPFDAAACFLAIGMVIIL-SSWTENYGDPSES-K-DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLW  270 (360)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (360)
                      +  |+..+...+...++...... .+.||++++++++ + +..++.++..++.+|+|+++.......+...........+
T Consensus       156 g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (365)
T TIGR00900       156 G--IKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVAL  233 (365)
T ss_pred             h--HHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4  55666655544444333332 2223322211111 1 2233344556678888888876665555544444433367


Q ss_pred             hccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          271 TPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       271 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      .|.+.++..+.+.   +.......++.+++.+..+++.||.+||+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  278 (365)
T TIGR00900       234 FPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMA  278 (365)
T ss_pred             hHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Confidence            7877766445444   56667778889999999999999998884

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.93  E-value=3e-23  Score=187.35  Aligned_cols=249  Identities=14%  Similarity=0.109  Sum_probs=169.1

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcch
Q 018113           45 VYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQ  123 (360)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~  123 (360)
                      ..+.....+....+.+|.+.+|+|.|.++.|++.+...++..+++++.|+++||+|||+++..+.++.+++. ++++++|
T Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~   90 (382)
T PRK10091         11 GTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSS   90 (382)
T ss_pred             HHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCc
Confidence            333344444445678999999999999999999999999999999999999999999999999999999987 7889999


Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchh
Q 018113          124 YKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAP  200 (360)
Q Consensus       124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~  200 (360)
                      ++.+++.|++.|++.+...+.. ..++.|.   ++|++..+    ..    ..+..++..+++.+++.+.+.  ++||..
T Consensus        91 ~~~l~~~r~l~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~----~~~~~~g~~~g~~l~~~l~~~--~gwr~~  159 (382)
T PRK10091         91 YLMLAIGRLVSGFPHGAFFGVG-AIVLSKIIKPGKVTAAVA----GM----VSGMTVANLLGIPLGTYLSQE--FSWRYT  159 (382)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHH-HHHHHHhCChHHhhHHHH----HH----HHHHHHHHHHhccHHHHHhhh--ccHHHH
Confidence            9999999999999998877665 4366665   23333222    22    234445666666666666554  456677


Q ss_pred             hhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCC
Q 018113          201 FDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE  280 (360)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (360)
                      |.+.+.+..+..+......||.++++++  + .+   +. .+.+|+++.+.......+.....+. ...+.+.+.++..+
T Consensus       160 f~~~~~~~~~~~~~~~~~lp~~~~~~~~--~-~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g  231 (382)
T PRK10091        160 FLLIAVFNIAVLASIYFWVPDIRDEAKG--G-LR---EQ-FHFLRSPAPWLIFAATMFGNAGVFA-WFSYIKPYMMFISG  231 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCccccc--C-HH---HH-HHHhcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC
Confidence            7776665554444333345554322111  1 11   11 1345666666554433333323333 24455556655445


Q ss_pred             cch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          281 IPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       281 ~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      .++   +.......++.++++++.+++.||+++|+
T Consensus       232 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~  266 (382)
T PRK10091        232 FSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR  266 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh
Confidence            544   46667778899999999999999999884

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.93  E-value=6.1e-23  Score=187.00  Aligned_cols=243  Identities=16%  Similarity=0.207  Sum_probs=166.4

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      .|.+|.+.+|+|.|+.+.+...+...++..+.+++.|+++||+||||++..+....+++. ++.++++++.+++.|+++|
T Consensus        33 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  112 (406)
T PRK15402         33 QPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQG  112 (406)
T ss_pred             hcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            466888999999999999999999999899999999999999999999999998888877 7788899999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      ++.+...+.... .+.|.   ++|.+..+.    ..   . +..++..++|.+++.+.+..+|  +..+++.+.+.++..
T Consensus       113 ~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~----~~---~-~~~~~~~~g~~i~~~l~~~~~w--~~~~~~~~~~~~~~~  181 (406)
T PRK15402        113 IGLCFIGAVGYA-AIQESFEEADAIKITAL----MA---N-VALLAPLLGPLVGAALIHVLPW--RGMFVLFAALAALSF  181 (406)
T ss_pred             hHhhhHHHHHHH-HHHHHhChhHHHHHHHH----HH---H-HHHHHHHHHHHHHHHHHHccCc--cHHHHHHHHHHHHHH
Confidence            998887666644 66665   222221111    11   1 2224556666666666665454  456666555555444


Q ss_pred             HHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHH
Q 018113          213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFAT  289 (360)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  289 (360)
                      .......||++++++++ ...++..++.+++++||+++.......+....... ...+.|.+.++..+.++   +.....
T Consensus       182 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~~~~~~g~~~~~  259 (406)
T PRK15402        182 FGLWRAMPETAGRVGEK-LSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLA-WIALSPVILISGEQLSSYEYGLLQVP  259 (406)
T ss_pred             HHHHHhCCCCCcccccc-ccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHhCCCHHHHHHHHHH
Confidence            44433445543322221 11233445567789999988876655554433333 34556777665555554   344444


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCh
Q 018113          290 FMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       290 ~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      ..++.+++.++.+++.||+++|+
T Consensus       260 ~~~~~~~g~~~~g~l~~r~~~~~  282 (406)
T PRK15402        260 VFGALIAGNLTLARLTSRRPLRS  282 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHH
Confidence            56678889999999999998874

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.93  E-value=2.4e-23  Score=191.00  Aligned_cols=260  Identities=10%  Similarity=0.024  Sum_probs=173.3

Q ss_pred             hhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHH
Q 018113           38 FKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI  113 (360)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~  113 (360)
                      .++......++..+...++    .+.+|.+.+++|+|+++.|.+.+...++..+++++.|+++||+|||+++.++.++.+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~   99 (434)
T PRK11663         20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG   99 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence            3444444444555544443    456999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018113          114 LSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLL  189 (360)
Q Consensus       114 ~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l  189 (360)
                      ++. +.+++++++.+++.|++.|++.+..++.... ++.|+   ++|++..+.....        ..+|..+++.+.+.+
T Consensus       100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~-~~~~~~~~~~rg~~~~~~~~~--------~~~g~~~~~~~~~~l  170 (434)
T PRK11663        100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAK-LLTAWYSRTERGGWWAIWNTA--------HNVGGALIPLVVGAI  170 (434)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHH-HHHHhCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence            877 7788999999999999999999888777755 77776   4566644333332        225555555555665


Q ss_pred             hcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCC---------Ccch---hHHH----HHHHHH-HHHhcchhHHHH
Q 018113          190 VDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP---------SESK---DLLT----QFRGAA-VAIASDEKIALL  252 (360)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~----~~~~~~-~~~~~~~~~~~~  252 (360)
                      .+.  ++||..|.+.+++.++..+......+|++++.         ++++   +..+    +.++.. +..+++++++..
T Consensus       171 ~~~--~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (434)
T PRK11663        171 ALH--YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLL  248 (434)
T ss_pred             HHc--ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHH
Confidence            554  45666676655544333222222223221100         0000   0000    011111 135677888876


Q ss_pred             HHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcC
Q 018113          253 GAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSP  309 (360)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g  309 (360)
                      .....+....... ...|.|.|+++..+.+.   +...+...+++++++++.|+++||+.
T Consensus       249 ~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~  307 (434)
T PRK11663        249 SFSYVLVYVVRAA-INDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLF  307 (434)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence            6555544444333 57789999876666654   45667778889999999999999983

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.93  E-value=8e-23  Score=187.48  Aligned_cols=263  Identities=16%  Similarity=0.140  Sum_probs=173.4

Q ss_pred             chhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHH
Q 018113           37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY  112 (360)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~  112 (360)
                      ++++..+..+.+..+.++++    .+..|.+.+++|+|+.+.+.+.+...++..+++++.|+++||+|||+++..+.+..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~   93 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            45555566666666777666    35588999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018113          113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL  188 (360)
Q Consensus       113 ~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  188 (360)
                      +++. +++++++++.++++|++.|++.+..++.... ++.|.   ++|++..+...        .+..+|..+++.+...
T Consensus        94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~-~~~~~~~~~~r~~~~~~~~--------~~~~lg~~~~~~l~~~  164 (426)
T PRK12307         94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACAST-YAVESWPKHLKSKASAFLV--------SGFGIGNIIAAYFMPS  164 (426)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHhCCHhHhhHhhhHHH--------HHHhHHHHHHHHHHHH
Confidence            9987 7788999999999999999999988887755 77775   55666443332        2333555666666655


Q ss_pred             hhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCC-----Ccc---hhHHHHHHHHHHHHhcchhHHHHHHHHHH--
Q 018113          189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP-----SES---KDLLTQFRGAAVAIASDEKIALLGAIQSL--  258 (360)
Q Consensus       189 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  258 (360)
                      +.+..  +|+..+++.....++.. ......||+++.+     ++.   ++..+..+...++++++++++........  
T Consensus       165 l~~~~--~w~~~f~i~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (426)
T PRK12307        165 FAEAY--GWRAAFFVGLLPVLLVI-YIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLF  241 (426)
T ss_pred             HcccC--CHHHHHHHHHHHHHHHH-HHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHH
Confidence            55544  45566655433322222 2212233322100     000   00001111244567777776543322211  


Q ss_pred             HHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          259 FEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      ...........+.|.|.++. +.+.   +...+...++.++++++.+++.||++||+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~  297 (426)
T PRK12307        242 SIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK  297 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            11111112456778777654 4443   45566778889999999999999999884

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.92  E-value=3.8e-23  Score=186.53  Aligned_cols=247  Identities=14%  Similarity=0.129  Sum_probs=173.0

Q ss_pred             hhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHH
Q 018113           54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRI  132 (360)
Q Consensus        54 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~  132 (360)
                      .+..|.+|.+.+++|+|+++.+.+.+...++..+++++.|+++||+|||+++..+.++.+++. ++.++++++.+.+.|+
T Consensus         8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   87 (377)
T PRK11102          8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRF   87 (377)
T ss_pred             HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            334588999999999999999999999999999999999999999999999999999988877 7788899999999999


Q ss_pred             HHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHH
Q 018113          133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA  209 (360)
Q Consensus       133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  209 (360)
                      +.|++.+...+...+ ++.|.   ++|++..+....        +..+|..+++.+++.+.+.  ++|+..+.+.+.+..
T Consensus        88 l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~  156 (377)
T PRK11102         88 LHGLAAAAASVVINA-LMRDMFPKEEFSRMMSFVTL--------VMTIAPLLAPIIGGWLLVW--FSWHAIFWVLALAAI  156 (377)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH--cChHHHHHHHHHHHH
Confidence            999999888777755 77765   445554333222        2234555556665555554  355667766666555


Q ss_pred             HHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHH
Q 018113          210 IGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFI  286 (360)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  286 (360)
                      +.........||+++++++++...++..++.++.+++|+.+.......+.....+. ...+.|.+..+..+.++   +..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~  235 (377)
T PRK11102        157 LAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFS-FLTAGPFVYIELNGVSPQNFGYY  235 (377)
T ss_pred             HHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH-HHHcCHHHHHHHhCCCHHHHHHH
Confidence            55444434445543332222222222334455778888887765554444443333 34556666655455444   566


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          287 FATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       287 ~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      .....++.+++++..+++.||+|+|+
T Consensus       236 ~~~~~~~~~~~~~~~g~l~~r~g~~~  261 (377)
T PRK11102        236 FALNIVFLFVMTIINSRFVRRVGALN  261 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence            67778889999999999999999885

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.92  E-value=8.8e-23  Score=183.40  Aligned_cols=255  Identities=16%  Similarity=0.181  Sum_probs=165.8

Q ss_pred             HHHHhhhh-hHHHHH-HHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcc-hH
Q 018113           49 MMAGDWLQ-GPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP-QY  124 (360)
Q Consensus        49 ~~~~~~~~-~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~-~~  124 (360)
                      ..+..... .|..|. +.+++|+|+.+.+++.+...++..+.+++.|+++||+|||+.+..+.++..++. ++++++ ++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~   91 (366)
T TIGR00886        12 LSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSY   91 (366)
T ss_pred             HHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            33333333 677885 889999999999999999999999999999999999999999999999999877 778888 99


Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc------ccCC
Q 018113          125 KILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD------SFSL  195 (360)
Q Consensus       125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~------~~~~  195 (360)
                      +.+++.|+++|++.+.. +...+ +++|.   ++|++..+.....    ..+|..+++.+++.+...+.+      ..+|
T Consensus        92 ~~~~~~~~~~g~~~~~~-~~~~~-~~~~~~~~~~r~~~~~~~~~~----~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w  165 (366)
T TIGR00886        92 SVLLLLRLFIGIAGGSF-ASCMP-WISFFFPKKIQGTALGLAAGW----GNMGGGVAQFVMPPIIGSLIFGAGLPAHLAW  165 (366)
T ss_pred             HHHHHHHHHHHHhchhh-HhHHH-HHHHhcCHhhhhHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            99999999999986544 54545 67775   5566644443333    334555555555555443322      1245


Q ss_pred             CCchhh-hhhHHHHHHHHHHHhhhhccccCCCCc-chhHH--------HHHHHHHHHHhcchhHHHHHHHHHHHHhhHHH
Q 018113          196 GPVAPF-DAAACFLAIGMVIILSSWTENYGDPSE-SKDLL--------TQFRGAAVAIASDEKIALLGAIQSLFEGSMYT  265 (360)
Q Consensus       196 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (360)
                      +  +.+ ...+.+..+.........+|+++++++ ++...        ++..+...+.+++|+++.......+.....+.
T Consensus       166 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (366)
T TIGR00886       166 G--WAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLG  243 (366)
T ss_pred             c--chhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence            5  445 222222222222221222222111111 00000        01111345677888887766655554444444


Q ss_pred             HHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          266 FVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                       ...+.|.|.++..+.+.   +.......+.+++++++.+++.||+|+|+
T Consensus       244 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~  292 (366)
T TIGR00886       244 -VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR  292 (366)
T ss_pred             -HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch
Confidence             56788888877666554   45566677788899999999999999985

>PRK03699 putative transporter; Provisional

Probab=99.92  E-value=7.7e-23  Score=185.47  Aligned_cols=254  Identities=12%  Similarity=0.077  Sum_probs=166.4

Q ss_pred             HHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 018113           41 NYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC  116 (360)
Q Consensus        41 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~  116 (360)
                      +....+++..+.++.+    ++.+|++.+++|+|+++.+.+.+...++..+++++.|++.||+|||+++..+.++.+++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~   86 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAV   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3444444444444443    466899999999999999999999999888999999999999999999999998888877


Q ss_pred             -HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 018113          117 -ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS  192 (360)
Q Consensus       117 -l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~  192 (360)
                       ++.++++++.+++.|+++|++.+...+...+ ++.|.   ++|+...+....        +..++..++|.+.+.+.+.
T Consensus        87 ~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~-~i~~~~~~~~r~~~~~~~~~--------~~~~g~~~~~~~~~~l~~~  157 (394)
T PRK03699         87 AGLMFSHSLALFSIAMFVLGVVSGITMSIGTF-LITHVYEGKQRGSRLLFTDS--------FFSMAGMIFPIIAAYLLAR  157 (394)
T ss_pred             HHHHHcchHHHHHHHHHHHHHhhHhhccchhH-HhhhhcccchHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhc
Confidence             7788999999999999999999888776645 66665   334442222211        2224445555555444331


Q ss_pred             cCCCCchhhhhhHHHHHHHHHHHhh-hhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhh
Q 018113          193 FSLGPVAPFDAAACFLAIGMVIILS-SWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWT  271 (360)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (360)
                       .++||..|...+.+.++..++... ..|+.+++++++++  +.    .++ ..+++++.......+.....+. ...|.
T Consensus       158 -~~gw~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~----~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~  228 (394)
T PRK03699        158 -SIEWYWVYACIGLVYVAIFILTLFSEFPALGKHAPKADK--PV----AKE-KWGIGVLFLAIAALLYILAQLT-FISWV  228 (394)
T ss_pred             -cccHHHHHHHHHHHHHHHHHHHHhcCCccccccCccccC--cc----ccc-cCChHHHHHHHHHHHHHHHHHH-HHHHH
Confidence             245667776655554443333222 22221111111100  00    011 2235555544444444444444 57899


Q ss_pred             ccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          272 PALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       272 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      |.|.+++.+.+.   +...+...++..+++++.++++||+++|+
T Consensus       229 p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  272 (394)
T PRK03699        229 PEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR  272 (394)
T ss_pred             HHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence            999977666655   45667777889999999999999999985

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.92  E-value=3.1e-22  Score=182.29  Aligned_cols=241  Identities=15%  Similarity=0.126  Sum_probs=166.6

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      .|.+|.+.+++|.|.++.++..+..+++..+++++.|+++||+|||+++..+.++.+++. ++.+++|++.++++|+++|
T Consensus        36 ~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G  115 (413)
T PRK15403         36 QPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQG  115 (413)
T ss_pred             ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            577889999999999999999999999999999999999999999999999999988877 7788999999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      ++.+...+.. ..++.|.   ++|++..+.    ....    ..+++.+++.+++.+.++  ++|+..|++.+.+.++..
T Consensus       116 i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~g~~lg~~l~~~--~gw~~~f~~~~~~~~i~~  184 (413)
T PRK15403        116 TSICFIATVG-YVTVQEAFGQTKGIKLMAI----ITSI----VLVAPIIGPLSGAALMHF--VHWKVLFAIIAVMGLIAF  184 (413)
T ss_pred             HHHHHHHHHH-HHHHHHhcCHHHHHHHHHH----HHHH----HHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHH
Confidence            9987654444 3356665   233342222    2222    224455555555555544  456677877766666555


Q ss_pred             HHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcchh---HHHHH
Q 018113          213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG---FIFAT  289 (360)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  289 (360)
                      +......||++++++++. ..++..++.++++|||+++.......+.....+. ...+.|.+.++..+.++.   .....
T Consensus       185 ~~~~~~lp~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~~~~P~~l~~~~g~s~~~~gl~~~~  262 (413)
T PRK15403        185 VGLLLAMPETVKRGAVPF-SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMS-WVAVSPVILIDAGGMTTSQFAWTQVP  262 (413)
T ss_pred             HHHHHhCCCCccccCCCC-ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHhChHHHHHhcCCCHHHHHHHHHH
Confidence            544345566543322211 1223344567889999999877666555554444 466788888877776653   44444


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC
Q 018113          290 FMLASMLGSSLASRLMARSPP  310 (360)
Q Consensus       290 ~~~~~~~~~~~~g~l~dr~g~  310 (360)
                      ...+.++++.+.+++.+|..+
T Consensus       263 ~~~~~~i~~~l~~~~~~~~~~  283 (413)
T PRK15403        263 VFGAVIVANAIVARFVKDPTE  283 (413)
T ss_pred             HHHHHHHHHHHHHHHhccCCc
Confidence            566677777777776654443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.92  E-value=4.3e-23  Score=192.48  Aligned_cols=258  Identities=17%  Similarity=0.206  Sum_probs=176.5

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      .+.+|.+.+++|.|.++.+++.+...++..++.++.|+++||+|||+++..+.++..++. ++++++|++.+++.|+++|
T Consensus        22 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G  101 (485)
T TIGR00711        22 NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQG  101 (485)
T ss_pred             HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            566999999999999999999999999999999999999999999999999999999977 7888999999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      ++.+...+.... ++.|.   ++|++..+..    .    .+..+|..+++.+++++.++.+|+  +.|+....+.++..
T Consensus       102 ~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~----~----~~~~~g~~~g~~~~~~l~~~~~w~--~~f~~~~~~~~~~~  170 (485)
T TIGR00711       102 FGGGPLIPLSFS-TLLNIYPPEKRGRAMAIW----G----LTVLVAPALGPTLGGWIIENYHWR--WIFLINVPIGIIVV  170 (485)
T ss_pred             hhhhhHHHHHHH-HHHHHCCHHHHHHHHHHH----H----HHHHHHhhhhhccHhHhccCcCce--ehhhhhhHHHHHHH
Confidence            999988887755 77776   4455533322    2    233456667777777777665555  55655554444444


Q ss_pred             HHHhhhhccccCCCCcchhHH----------------------------------------------HHHH--H--HHHH
Q 018113          213 VIILSSWTENYGDPSESKDLL----------------------------------------------TQFR--G--AAVA  242 (360)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~--~--~~~~  242 (360)
                      .......||++++++++.+..                                              ++.+  +  ...+
T Consensus       171 ~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (485)
T TIGR00711       171 VVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLR  250 (485)
T ss_pred             HHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHH
Confidence            333333343322211110000                                              0000  0  0124


Q ss_pred             HhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHH
Q 018113          243 IASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIV  319 (360)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  319 (360)
                      ++|+|+++.......+.....+. ...+.|.|.++..+.++   +.......++.++++++.+++.||++||+  ....+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~--~~~~g  327 (485)
T TIGR00711       251 LFKYRNFTIGCVYMSLLGLGLYG-SFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRK--LVTIG  327 (485)
T ss_pred             HHcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH--HHHHH
Confidence            56777777665555554444444 46778888877666655   46666778889999999999999999884  44444


Q ss_pred             HHHHHHHHH
Q 018113          320 FVVSSVSLL  328 (360)
Q Consensus       320 ~~~~~~~~~  328 (360)
                      .....+...
T Consensus       328 ~~~~~~~~~  336 (485)
T TIGR00711       328 LILYAVGFY  336 (485)
T ss_pred             HHHHHHHHH
Confidence            444333333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.92  E-value=2e-23  Score=186.44  Aligned_cols=254  Identities=24%  Similarity=0.308  Sum_probs=170.3

Q ss_pred             HHHHHHhhhhhHHHH-HHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchH
Q 018113           47 SLMMAGDWLQGPYVY-YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQY  124 (360)
Q Consensus        47 ~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~  124 (360)
                      ++..+......+..| .+.+++|.|+++.+++.+...++..+.+++.|+++||+|||+++..+.++.+++. +..++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~   85 (352)
T PF07690_consen    6 FLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNF   85 (352)
T ss_dssp             HHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhH
Confidence            344444455567788 8889999999999999999999999999999999999999999999999999985 55566777


Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhh
Q 018113          125 KILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPF  201 (360)
Q Consensus       125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~  201 (360)
                      +.+++.|++.|++.+...+.... ++.|.   ++|++..+....        +..+|..+++.+++.+.+..+  |+..+
T Consensus        86 ~~~~~~~~l~g~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~--------~~~~g~~~g~~l~~~l~~~~~--~~~~~  154 (352)
T PF07690_consen   86 WLLLIARFLLGIGSGFFSPASNA-LIADWFPPEERGRAFGILSA--------GFSLGSILGPLLGGFLISYFG--WRWAF  154 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCTCCHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCHCH--HCCHH
T ss_pred             HHHhhhccccccccccccccccc-cccccchhhhhhhccccccc--------hhhhhhhcccchhhhhhhccc--ccccc
Confidence            79999999999999999888866 78876   355553333332        233555666666666655444  55667


Q ss_pred             hhhHHHHHHHHHHHhhhhccccCCC--C-cchh---HHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhcccc
Q 018113          202 DAAACFLAIGMVIILSSWTENYGDP--S-ESKD---LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS  275 (360)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (360)
                      ++.+.+.++..++.....+++++++  + +.++   ..++..+..+.++++|.++.......+ ....+.....+.|.|.
T Consensus       155 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l  233 (352)
T PF07690_consen  155 LISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFL-FFFVFSGFSFFLPLYL  233 (352)
T ss_dssp             HHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHHHC
T ss_pred             ccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhH-HHHHHHHhhcccchhh
Confidence            7777776666554222223222211  1 1111   111111124566777766632222222 2223333678888887


Q ss_pred             CCCCCcc-h---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          276 PNDEEIP-H---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       276 ~~~~~~~-~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      ++..+.+ .   +.......+.+++++++.+++.||+++|+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  274 (352)
T PF07690_consen  234 QEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR  274 (352)
T ss_dssp             CHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            7766666 3   34567778888888999999999999874

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.92  E-value=3.8e-22  Score=180.98  Aligned_cols=241  Identities=15%  Similarity=0.133  Sum_probs=164.6

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      .+.+|.+.+++|.|+++.++..+...++..+++++.|+++||+|||+.+..+.+...++. ++..+++++.+++.|+++|
T Consensus        23 ~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g  102 (392)
T PRK10473         23 LVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQG  102 (392)
T ss_pred             hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            577999999999999999999999998888999999999999999999999998888877 6778899999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      ++.+...+.... ++.|.   ++|++..+.....        ..++..+++.+++.+.+..  +|+..+.+.+.+.++..
T Consensus       103 ~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~--------~~i~~~~~~~i~~~l~~~~--g~~~~~~~~~~~~~i~~  171 (392)
T PRK10473        103 IGAGCCYVVAFA-ILRDTLDDRRRAKVLSLLNGI--------TCIIPVLAPVLGHLIMLKF--PWQSLFYTMAAMGILVL  171 (392)
T ss_pred             hhhhHHHHHHHH-HHHHHcCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhCc--ChHHHHHHHHHHHHHHH
Confidence            998887776645 77765   4555533332222        2244455555555554443  45566666655555444


Q ss_pred             HHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHH
Q 018113          213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFAT  289 (360)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  289 (360)
                      .......+|++++++++++   +..+..++.+++++.+.......+....... ...+.|.+.+++.+.+.   +.....
T Consensus       172 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~  247 (392)
T PRK10473        172 LLSLFILKETRPARAPAAS---SKPRENSESLLNRFFLSRLVITTLSVTVILT-FVNTSPVLLMEQMGFSRGEYAIIMAL  247 (392)
T ss_pred             HHHHHHcCCCCCcccCCcc---chHHHHHHHHhCHHHHHHHHHHHHHHHHHHH-HHHhCHHHHHHHcCCCHHHHHHHHHH
Confidence            4443444554333221111   1122334567788776654444433333333 34556666655555554   455667


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCh
Q 018113          290 FMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       290 ~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      ..++.+++.+..+++.||+|+|+
T Consensus       248 ~~~~~i~~~~~~~~l~~r~g~~~  270 (392)
T PRK10473        248 TAGVSMTVSFSTPFALGIFKPRT  270 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHH
Confidence            78888999999999999999884

>TIGR00897 2A0118 polyol permease family

Probab=99.91  E-value=6.2e-22  Score=179.99  Aligned_cols=265  Identities=13%  Similarity=0.161  Sum_probs=169.5

Q ss_pred             ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHH
Q 018113           35 FNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL  114 (360)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~  114 (360)
                      .+|.........++....++...++++.+.+|+|.|+++.|++.+...++..+++++.|+++||+||||++..+..+.++
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~   90 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCV   90 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            34444444555556666666666777788899999999999999999999999999999999999999999999998887


Q ss_pred             HH-HH---Hh-cchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHH-HHHhhh
Q 018113          115 SC-IT---KH-SPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVA-ILSGLF  185 (360)
Q Consensus       115 ~~-l~---~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~-~~~~~l  185 (360)
                      +. ++   +. .++++.+++.|++.|++.+...+.... .+.+.   ++|++..+......+        +|. .+++.+
T Consensus        91 ~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~~~--------~g~~~~g~~~  161 (402)
T TIGR00897        91 GHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLV-WVVYNTKQDNLSSAVGWFWAVYS--------IGIGVFGSYY  161 (402)
T ss_pred             HHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHH-HHHHhCCHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence            65 33   23 357888889999999998877665544 44443   667775554443333        332 344555


Q ss_pred             hhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCC-CCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHH
Q 018113          186 GNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD-PSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMY  264 (360)
Q Consensus       186 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (360)
                      ++.+.+..+|+  ..++.......+.........++.+++ ++++++..++..+..++++|+|+++.......+.....+
T Consensus       162 ~~~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (402)
T TIGR00897       162 SSYAIPAFGEM--NTLWSALAFVLTGGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNVLLGGMVRIINTIGLF  239 (402)
T ss_pred             HHhcccccchH--HHHHHHHHHHHHHHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence            55555544432  222222111111111111112221111 111111122333445678899998877666555444444


Q ss_pred             HHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          265 TFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      . ...|.|.|.++ .+.+.   +.......+++.++++..|+++||++||+
T Consensus       240 ~-~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  288 (402)
T TIGR00897       240 G-FAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN  288 (402)
T ss_pred             H-HHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence            4 57788988755 45544   34556667889999999999999999875

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.91  E-value=7e-22  Score=178.22  Aligned_cols=264  Identities=13%  Similarity=0.055  Sum_probs=172.9

Q ss_pred             HHHHHHHhhhh-hHHHHHHHH-hhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc-
Q 018113           46 YSLMMAGDWLQ-GPYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-  121 (360)
Q Consensus        46 ~~~~~~~~~~~-~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~-  121 (360)
                      .+...+..++. +|..+.+.+ |+|+|++|.+++.+...+.+.+..++.|++.||+|.|+++..+.++.++.. +.+++ 
T Consensus        42 ~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~  121 (462)
T PRK15034         42 CLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAV  121 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445444 676777766 899999999999999999999998999999999999999999999988876 66665 


Q ss_pred             ----chHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhccc
Q 018113          122 ----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL-LVDSF  193 (360)
Q Consensus       122 ----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-l~~~~  193 (360)
                          +|++.+++.|++.|++ +..++.... .++++   ++||+..+.....    .+.|..++..+.|.+... +.+..
T Consensus       122 ~~~~~s~~~lli~r~l~Gig-g~~f~~~~~-~vs~wfp~~~rG~A~Gi~~g~----G~~G~~l~~~l~p~~i~~~l~~~~  195 (462)
T PRK15034        122 QNPNTPFGIFIVIALLCGFA-GANFASSMG-NISFFFPKAKQGSALGINGGL----GNLGVSVMQLVAPLVIFVPVFAFL  195 (462)
T ss_pred             cccCCCHHHHHHHHHHHHHH-HHhHHHHHH-HHHHHCCHhHhHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHh
Confidence                8999999999999998 556677756 67775   5577755554333    234444555555543321 11212


Q ss_pred             CC-----------CCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhh
Q 018113          194 SL-----------GPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGS  262 (360)
Q Consensus       194 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (360)
                      +|           +|+..+.+..++.++..+......++.++ ++   +..    ++..+.+|+|+.|..++...+..+.
T Consensus       196 G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-~~---~~~----~~~~~vlk~~~~Wllslly~~tFG~  267 (462)
T PRK15034        196 GVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-SR---ASI----ADQLPVLQRLHLWLLSLLYLATFGS  267 (462)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-cc---cCH----HHHHHHhCCCchhHHHHHHHHHHHH
Confidence            22           13444444444443333333222222211 11   111    2234679999999998888776655


Q ss_pred             HHHHHHhhhccccCCCCCcchh-HHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHH
Q 018113          263 MYTFVFLWTPALSPNDEEIPHG-FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS  326 (360)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  326 (360)
                      ... ...+.|.|.++.++.... ....+..+...+.++++|+++||+|+++  .+........++
T Consensus       268 fvg-~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~--vl~~~~i~~~i~  329 (462)
T PRK15034        268 FIG-FSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR--VTLINFIFMAIF  329 (462)
T ss_pred             HHH-HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH--HHHHHHHHHHHH
Confidence            555 577899888776533222 2233446778888999999999999984  444444434433

>TIGR00896 CynX cyanate transporter

Probab=99.91  E-value=2e-22  Score=180.38  Aligned_cols=250  Identities=18%  Similarity=0.177  Sum_probs=163.1

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      +|.+|.+.+|+|.|+++.|+..+...++..+++++.|+++||+||||++..+.+...++. .+ .+++.+.+++.|++.|
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g   98 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIG   98 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999988877766 44 7788999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV  213 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  213 (360)
                      ++.+...+.... ++.|.  ++|++..+.    ...+..+|.    .+++.+...+.+..+.+||..|...+...++...
T Consensus        99 ~g~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~g~----~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~  169 (355)
T TIGR00896        99 VGIAIINVLLPS-LIKRDFPQRVGLMTGL----YSMALMGGA----ALAAAATVPLAQHSGGHWQQALAWWALPALLALL  169 (355)
T ss_pred             HHHHHHhccchH-HHHHhCcchhhHHHHH----HHHHHHHHH----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            999887666534 66665  445553332    332333333    4444444444443333466666554443333222


Q ss_pred             HHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHH
Q 018113          214 IILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATF  290 (360)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  290 (360)
                      ..   .++.+++++++++..   +...++.+|+|+.+.......+.....+. ...|.|.|.++. +.+.   +...+..
T Consensus       170 ~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lp~~~~~~-g~~~~~~g~~~~~~  241 (355)
T TIGR00896       170 AW---IPQVRRRVAANQTTT---RLTPVRIWRSPLAWQVTVFFGLQSGLYYS-LIGWLPAILISH-GASAATAGSLLALM  241 (355)
T ss_pred             HH---hhhhccccCCCCCCC---CCCCchhhcCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence            22   222221111111000   01233567888887665554444344444 567888888653 5444   5677778


Q ss_pred             HHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 018113          291 MLASMLGSSLASRLMARSPPRVESYMQIVFVVSSV  325 (360)
Q Consensus       291 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~  325 (360)
                      .++.+++++..|++.||+++|+ +..........+
T Consensus       242 ~~~~i~~~~~~g~l~dr~~~~~-~~~~~~~~~~~~  275 (355)
T TIGR00896       242 QLAQAASALLIPALARRVKDQR-GIVAVLAVLQLV  275 (355)
T ss_pred             HHHHHHHHHhHHHHHhhhccch-HHHHHHHHHHHH
Confidence            8899999999999999996543 334343333333

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.91  E-value=4.2e-22  Score=189.86  Aligned_cols=133  Identities=21%  Similarity=0.255  Sum_probs=110.8

Q ss_pred             ccchhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHH
Q 018113           35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL  110 (360)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~  110 (360)
                      ..+++|.++.++.+..+.++++    ++.+|.+.+++|++..+.+++.+..+++..++++++|+++||+|||++++++.+
T Consensus       161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li  240 (742)
T TIGR01299       161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS  240 (742)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            4567787777777887777776    455899999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHH
Q 018113          111 TYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFS  168 (360)
Q Consensus       111 ~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~  168 (360)
                      +.+++. +++++++++.++++|++.|++.+...+.... ++.|.   ++|+...+.......
T Consensus       241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~-~isE~~p~~~Rg~~~g~~~~~~~  301 (742)
T TIGR01299       241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFS-YFAEFLAQEKRGEHLSWLCMFWM  301 (742)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHH
Confidence            888876 7788999999999999999999999887755 88886   556664444443333

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.91  E-value=2e-22  Score=182.63  Aligned_cols=244  Identities=18%  Similarity=0.146  Sum_probs=171.2

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      +...|.+.+++|.|+.+.+++.+...++..+++++.|+++||+|||+++..+.++.+++. +.+++++++.+++.|++.|
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g   93 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLG   93 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            455788999999999999999999999999999999999999999999999999888877 7788899999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      ++.+...+.... ++.|.   ++|++..+.....        ..+|..+++.+++.+.+..+  |+..+...+.+.++..
T Consensus        94 ~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~--------~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        94 AAEAPFFPGIIL-IVASWFPASERATAVSIFNSA--------QGLGGIIGGPLVGWILIHFS--WQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHhhhhHHHH-HHHHhCCHHHHHHHHHHHHHh--------chHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHH
Confidence            999988887755 78876   4566543333322        23555566666665555544  5566666555544444


Q ss_pred             HHHhhhhccccCCCCcc-hhHHH-----------------HHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccc
Q 018113          213 VIILSSWTENYGDPSES-KDLLT-----------------QFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL  274 (360)
Q Consensus       213 ~~~~~~~~~~~~~~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (360)
                      +......+|+++++++. ++..+                 +..+..++.+++|+++.......+....... ...+.|.|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  241 (399)
T TIGR00893       163 VLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGF-FLTWFPTY  241 (399)
T ss_pred             HHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHH-HHHHHHHH
Confidence            43322233322211110 00000                 0011244677888888776665555554444 57788888


Q ss_pred             cCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       275 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      .++..+.+.   +.......++.+++.+..+++.||++||+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            877666554   46667778889999999999999999884

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.91  E-value=1.6e-21  Score=177.08  Aligned_cols=270  Identities=9%  Similarity=0.041  Sum_probs=176.8

Q ss_pred             HHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHH---hcchHHH
Q 018113           51 AGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK---HSPQYKI  126 (360)
Q Consensus        51 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~---~~~~~~~  126 (360)
                      +.++...|.+|.+++++|+|+.+.|++.+..+++..+++++.|++.||+|||+++..+.++.+++. +..   ..++++.
T Consensus        17 ~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~   96 (410)
T TIGR00885        17 FANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTL   96 (410)
T ss_pred             HHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            334555788999999999999999999999999999999999999999999999999999998877 432   3468999


Q ss_pred             HHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----------
Q 018113          127 LMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS-----------  192 (360)
Q Consensus       127 l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~-----------  192 (360)
                      +++.|++.|+|.+...+...+ ++.+.   ++|++..+..+...+    +|..+|+.+++.+.....+.           
T Consensus        97 ~l~~~~l~G~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~  171 (410)
T TIGR00885        97 FLVGLFILTAGLGFLETAANP-YILVMGPESTATRRLNLAQSFNP----FGSIIGMVVAQQLILSNLPHQSQDVLDKLSP  171 (410)
T ss_pred             HHHHHHHHHhhHHHHHhhhhH-HHHHHCCHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCccchhhhhhhcCH
Confidence            999999999999999887766 65554   445554444444433    44445555544432111000           


Q ss_pred             ---------cCCCCchhhhhhHHHHHHHHHHHh-hhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhh
Q 018113          193 ---------FSLGPVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGS  262 (360)
Q Consensus       193 ---------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (360)
                               ...+||.+|.+.+.+.++..+... .+.|+.++++++  +  ++.+++.++++|+|+++...+..++....
T Consensus       172 ~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~l~~f~yvg~  247 (410)
T TIGR00885       172 EELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDAK--Q--ISFSASLSRLARIRHYREGVIAQFFYVGV  247 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc--c--ccchhhHHHHHhChhHHHHHHHHHHHHHH
Confidence                     012477888776665554433331 223332211111  1  11222334678888888866666665555


Q ss_pred             HHHHHHhhhccccCCCC-Ccch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhHh
Q 018113          263 MYTFVFLWTPALSPNDE-EIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIV  332 (360)
Q Consensus       263 ~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  332 (360)
                      ... ...+.+.|.++.. +.+.   +...........+|+++++++.||+++|+  .+........++..+...
T Consensus       248 e~~-~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~--~l~i~~~~~~~~~ll~~~  318 (410)
T TIGR00885       248 QIM-CWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK--VLMAYAIIGMALCLGSIF  318 (410)
T ss_pred             HHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHHHHHHH
Confidence            444 4677888876532 3322   23344555678899999999999998874  454555555444444433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.90  E-value=3.5e-22  Score=172.37  Aligned_cols=274  Identities=18%  Similarity=0.164  Sum_probs=188.3

Q ss_pred             HHHHHHHHhhhh-hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcc
Q 018113           45 VYSLMMAGDWLQ-GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP  122 (360)
Q Consensus        45 ~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~  122 (360)
                      .++...+..+.. +|..+.+.+|+|+|++|.+++.....+.+.+.-++.|.+.||+|.|++...+.++..+-+ ..+++.
T Consensus        21 ~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~  100 (417)
T COG2223          21 LAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAV  100 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHc
Confidence            344444555544 677788889999999999999999999999999999999999999999999999988865 556654


Q ss_pred             ---hHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCC-
Q 018113          123 ---QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL-  195 (360)
Q Consensus       123 ---~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~-  195 (360)
                         +++.+++++++.|++.+.. ....+ +++++   +++|...++..     ..++|..+...++|.+...    .++ 
T Consensus       101 ~~~~~~~ll~~gll~G~~GasF-av~m~-~~s~~fP~~~qG~AlGI~g-----~GN~G~av~q~~~P~v~~~----~g~~  169 (417)
T COG2223         101 TYPSTWQLLVIGLLLGLAGASF-AVGMP-NASFFFPKEKQGLALGIAG-----AGNLGVAVAQLVAPLVAVA----FGFL  169 (417)
T ss_pred             cCCchHHHHHHHHHHhccccee-hcccc-cccccCChhhhhHHHHHhc-----cccccHHHHHHHHHHHHHH----HhhH
Confidence               4559999999999986655 55556 77776   55566443333     3344555555555555443    342 


Q ss_pred             CCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhcccc
Q 018113          196 GPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS  275 (360)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (360)
                      .|+....+..+..++..+..+....+.++.+++.++..+   ...+.+.++++.|.+.+.+....++... +..+.|.|+
T Consensus       170 ~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~---~~~~~v~~~~~~W~lsllY~~tFG~Fvg-fs~~l~~~~  245 (417)
T COG2223         170 AWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP---AQLKAVFSNKDTWLLSLLYFATFGGFVG-FSAYLPMYL  245 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch---hHHHHHhcCcchHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            244444444444333333332223222221111111111   3455788899999998888877666656 699999999


Q ss_pred             CCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhHhccC
Q 018113          276 PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTIP  335 (360)
Q Consensus       276 ~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (360)
                      +++++.+.   +.......+.+.+.++.+|+++||+|.+  |.....+....++.....+..+
T Consensus       246 ~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~--rv~~~~f~~~~~~~~~l~~~~~  306 (417)
T COG2223         246 VTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR--RVTLAVFVGMALAAALLSLFLT  306 (417)
T ss_pred             HHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch--hHHHHHHHHHHHHHHHHHcccc
Confidence            99998877   4566667778888999999999999988  4566666666666665555543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.90  E-value=1.1e-21  Score=181.03  Aligned_cols=264  Identities=12%  Similarity=0.102  Sum_probs=166.4

Q ss_pred             ccchhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHH
Q 018113           35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL  110 (360)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~  110 (360)
                      .++++|.++..+++.......+    ....|++.++ |+|+.+.|+..+...++..+++++.|+++||+|||++++.+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~  101 (452)
T PRK11273         23 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  101 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHH
Confidence            3445566555555554444443    3447888888 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHhc----chHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 018113          111 TYILSC-ITKHS----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILS  182 (360)
Q Consensus       111 ~~~~~~-l~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~  182 (360)
                      +.+++. ++++.    ++++.+++.|++.|++.+..++.... .+.|.   ++|++..+....    +..+|..   ..+
T Consensus       102 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~-~~~~~~~~~~r~~~~~~~~~----~~~~g~~---~~~  173 (452)
T PRK11273        102 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVSVWNC----AHNVGGG---LPP  173 (452)
T ss_pred             HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHH-HHHHhCChHHHHHHHHHHHH----HHHhhhh---HHH
Confidence            888866 55554    46788899999999999888776645 55554   556664443322    2222221   222


Q ss_pred             hhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCC---CCcch-------------hHHHHHHHH-HHHHhc
Q 018113          183 GLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD---PSESK-------------DLLTQFRGA-AVAIAS  245 (360)
Q Consensus       183 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------~~~~~~~~~-~~~~~~  245 (360)
                      +.....+....  +|+..|++.+.+.++..++.....+|++++   +++++             +..++.++. .+.++|
T Consensus       174 ~l~~~~~~~~~--gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (452)
T PRK11273        174 LLFLLGMAWFN--DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLP  251 (452)
T ss_pred             HHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHc
Confidence            22211111112  455667665554444333332333332211   00000             000001111 224678


Q ss_pred             chhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 018113          246 DEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPP  310 (360)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~  310 (360)
                      ++.++...+...+.....+. ...|.|.|++++.+.+.   +.......++.+++.++.|+++||+++
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~-~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~  318 (452)
T PRK11273        252 NKLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR  318 (452)
T ss_pred             ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            88888876666665555555 57899999987666554   455566678888999999999999943

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.90  E-value=1.9e-21  Score=175.35  Aligned_cols=255  Identities=18%  Similarity=0.158  Sum_probs=159.1

Q ss_pred             HHHHHHHHhhhhhHHHHH-HHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHH-HHHHHHHHH-HHHhc
Q 018113           45 VYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT-YCLTYILSC-ITKHS  121 (360)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~-~~~~~~~~~-l~~~~  121 (360)
                      ..++..+..+...|.+|. +.+++|.|+.++|.+.+...+...+.+++.|+++||+||||.++. +.....++. +++++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~   84 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN   84 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence            344455555666787775 567899999999999999999899999999999999999987665 444445555 77888


Q ss_pred             chHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchh
Q 018113          122 PQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAP  200 (360)
Q Consensus       122 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~  200 (360)
                      ++++.+++.|++.|.+.+...|.... +..|. +++++..........    .+..+|..+++.+++.+.+.  ++|+..
T Consensus        85 ~~~~~l~~~~~~~g~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~ig~~~~~~l~~~--~~~~~~  157 (375)
T TIGR00899        85 RNYFLLLVLGVLLSSFASTANPQLFA-LAREHADRTGREAVMFSSVMR----AQISLAWVIGPPLAFWLALG--FGFTVM  157 (375)
T ss_pred             chHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHhhhcchhhHHHHHHHH----HHHhHHHHHhhhHHHHHHHh--cccHHH
Confidence            99999999999998877777666644 66665 333332111112222    22335556666666666554  356677


Q ss_pred             hhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCC
Q 018113          201 FDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE  280 (360)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (360)
                      |++.+.+.++..+......||.+++++++++ .    .+.++.+++++.+.......+....... ...+.|.|.+++.+
T Consensus       158 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g  231 (375)
T TIGR00899       158 FLTAALAFVLCGVLVWLFLPSYPRGAPGALT-R----LEVRGLLASRDTRLLFVACTLMWGCNIL-YIINMPLLIIHELG  231 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccCcccccC-c----chhhhhhcCcchHHHHHHHHHHHHHHHH-HHhhhHHHHHHHcC
Confidence            7776665555444443334543322221111 1    1123356666666544333333222222 34566777665555


Q ss_pred             cch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          281 IPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       281 ~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      .++   +..........+++.++.+++.||+++|+
T Consensus       232 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~  266 (375)
T TIGR00899       232 LPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR  266 (375)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh
Confidence            554   34444445567778899999999999985

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=99.90  E-value=4.3e-21  Score=174.05  Aligned_cols=263  Identities=16%  Similarity=0.144  Sum_probs=153.7

Q ss_pred             hHHHHHHHHHHHHHhhhhhHHHHH-HHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-
Q 018113           39 KNNYLLVYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-  116 (360)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-  116 (360)
                      .+......++.....++..|.+|. +.+|+|.|++++|.+.+...+...+.+++.|+++||+||||+++.+.+...++. 
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~   96 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGL   96 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHH
Confidence            333333444444445555677775 578999999999999999999999999999999999999999999887766543 


Q ss_pred             H---HHh-----cchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018113          117 I---TKH-----SPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (360)
Q Consensus       117 l---~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  185 (360)
                      .   ...     .++++.+++.|+++|++.+...+...+ ++.|.   ++|++..+..+..    ..    .|..+++.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~a~~~~~~~----~~----~g~~~g~~~  167 (392)
T PRK12382         97 AYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALT-WGLGLVGPKHSGKVMSWNGMA----MY----GALAAGAPL  167 (392)
T ss_pred             HHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCccccchhhhHHHHH----HH----HHHHHHHHH
Confidence            1   222     357889999999999999988776644 55554   6677755443322    22    344455555


Q ss_pred             hhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHH
Q 018113          186 GNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYT  265 (360)
Q Consensus       186 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (360)
                      ++.+.+..+  |+..+.+.....++..... ...||++++++++ +   +.++..+..++ +...     ..+.. ..+.
T Consensus       168 ~~~l~~~~g--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~---~~~~~~~~~~~-~~~~-----~~l~~-~~~~  233 (392)
T PRK12382        168 GLLLHSHFG--FAALALTTMVLPLLAWAFN-GTVRKVPAHAGER-P---SLWSVVGLIWK-PGLG-----LALQG-VGFA  233 (392)
T ss_pred             HHHHHhccC--hHHHHHHHHHHHHHHHHHH-HhccCCCCCcccC-c---hHHHHHHHHHH-hHHH-----HHHHH-HHHh
Confidence            555444444  5554444333332222222 2333322221111 1   11111111111 1111     11111 1222


Q ss_pred             HHHhhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHH
Q 018113          266 FVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS  326 (360)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  326 (360)
                      ....+.|.|.++....+.+.......++.+++++..+++.||+|+|+  .+..+..+..+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~--~~~~~~~~~~~~  292 (392)
T PRK12382        234 VIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVK--VAIVSLLVETVG  292 (392)
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCe--ehHHHHHHHHHH
Confidence            23455666655432222345555667778899999999999999885  333333333333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.90  E-value=3.7e-21  Score=175.48  Aligned_cols=265  Identities=22%  Similarity=0.192  Sum_probs=160.3

Q ss_pred             ccccchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhCCChhh-----hHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHH
Q 018113           33 SAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGE-----IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT  107 (360)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~  107 (360)
                      .++++.........++.........|++|.+.+++|.+..+     .|.+.+...+...+.+++.|+++||+|||+++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   89 (408)
T PRK09874         10 INWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLR   89 (408)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHH
Confidence            33333333333333444444455578899999999998665     3788888899899999999999999999999999


Q ss_pred             HHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 018113          108 YCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG  183 (360)
Q Consensus       108 ~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~  183 (360)
                      +.+..+++. +..+.++++.+++.|++.|++.+. .+.... ++.|.   ++|++..+..    ..    +..+|..+++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~----~~----~~~~g~~~~~  159 (408)
T PRK09874         90 SALGMGIVMVLMGLAQNIWQFLILRALLGLLGGF-VPNANA-LIATQVPRNKSGWALGTL----ST----GGVSGALLGP  159 (408)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh-HHhHHH-HHHHhcCHhhhhHHHHHH----HH----HHHHHHHHHH
Confidence            988888876 667789999999999999997654 455544 55554   4455533322    22    2234455555


Q ss_pred             hhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhH
Q 018113          184 LFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSM  263 (360)
Q Consensus       184 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (360)
                      .+++.+.+..  +|+..+.+.+.+.++..+......+|++++++++++  .+. ++..+..++++.+.......+.....
T Consensus       160 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (408)
T PRK09874        160 LAGGLLADSY--GLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM--LHM-REVVTSLKNPKLVLSLFVTTLIIQVA  234 (408)
T ss_pred             HHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh--hHH-HHHHHhCcCCchHHHHHHHHHHHHHH
Confidence            5555555544  455667666655554444443334443222111111  111 12234567777654333222222222


Q ss_pred             HHHHHhhhccccCCCCCc-c-----hhHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          264 YTFVFLWTPALSPNDEEI-P-----HGFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      ......+.|.|..+..+. +     .+.......++.+++.+..+++.||++||+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~  289 (408)
T PRK09874        235 TGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK  289 (408)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            222344555555442221 1     123444556778888899999999999985

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.90  E-value=4.5e-21  Score=174.07  Aligned_cols=241  Identities=15%  Similarity=0.106  Sum_probs=160.6

Q ss_pred             hhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHH
Q 018113           54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRI  132 (360)
Q Consensus        54 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~  132 (360)
                      ....|.+|.+.+++|.|+.+.++..+...++..+++++.|+++||+|||+++..+.....++. +..++++++.+++.|+
T Consensus        25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  104 (394)
T PRK11652         25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASA  104 (394)
T ss_pred             HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            333577899999999999999999999999999999999999999999999999998888876 6778899999999999


Q ss_pred             HHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHH
Q 018113          133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA  209 (360)
Q Consensus       133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  209 (360)
                      +.|++.+...+.... +..|.   +++++    ....    ...+..++..++|.+++.+.+..  +|+..+...+....
T Consensus       105 ~~g~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~g~~i~~~l~~~~--g~~~~f~~~~~~~~  173 (394)
T PRK11652        105 IQGLGTGVGGVMART-LPRDLYEGTQLRH----ANSL----LNMGILVSPLLAPLIGGLLTTLF--GWRACYLFLLLLGA  173 (394)
T ss_pred             HHHhhhhHHHHHHHH-HHHHhcCHHHHHH----HHHH----HHHHHHHHHHHHHHHHHHHHhcc--ChHHHHHHHHHHHH
Confidence            999998876665533 55654   22322    1122    23344455666666666665543  46666766555444


Q ss_pred             HHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHH
Q 018113          210 IGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFI  286 (360)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  286 (360)
                      +.........||++++++++    ++.++..++.+|+|+.+............... ...+.+.+.++..+.+.   +..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~  248 (394)
T PRK11652        174 GVTFSMARWMPETRPADARR----TRVLASYRTLLSNRRFNCYLLMLIGTLAGIAV-FEACSGVLMGAVLGLSSMTVSIL  248 (394)
T ss_pred             HHHHHHHHhCCccCccccch----hHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH-HHHhChHHHHHHcCCCHHHHHHH
Confidence            33333323445543322221    12344566778888877654433332222222 34455666666555554   444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCC
Q 018113          287 FATFMLASMLGSSLASRLMARSPP  310 (360)
Q Consensus       287 ~~~~~~~~~~~~~~~g~l~dr~g~  310 (360)
                      .....++.++++.+.+++.||.++
T Consensus       249 ~~~~~~~~~~g~~~~~~l~~~~~~  272 (394)
T PRK11652        249 FILPIPAAFFGAWFAGRPNKRFST  272 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555667777888888888888873

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.90  E-value=3.3e-21  Score=180.28  Aligned_cols=161  Identities=20%  Similarity=0.226  Sum_probs=120.3

Q ss_pred             ccchhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHH
Q 018113           35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL  110 (360)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~  110 (360)
                      .++++|+.+....+..+.+.++    .+..|.+.+++|+|+.+.+++.+...++..+++++.|+++||+|||+++..+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   93 (496)
T PRK03893         14 LNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV   93 (496)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            3455666665666666666655    456899999999999999999999999899999999999999999999999998


Q ss_pred             HHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018113          111 TYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG  186 (360)
Q Consensus       111 ~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  186 (360)
                      ..+++. +.+++++++.+++.|++.|++.+..++.... ++.|.   ++|++..+..    .    .+..+|..+++.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~----~----~~~~~g~~~~~~~~  164 (496)
T PRK03893         94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSAT-YVIESWPKHLRNKASGFL----I----SGFSIGAVVAAQVY  164 (496)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHHH----H----HHHHHHHHHHHHHH
Confidence            888877 7788899999999999999999988787755 67775   4455533322    2    23335556666666


Q ss_pred             hhhhcccCCCCchhhhhhHH
Q 018113          187 NLLVDSFSLGPVAPFDAAAC  206 (360)
Q Consensus       187 ~~l~~~~~~~~~~~~~~~~~  206 (360)
                      +.+.+..  +|+..|.+...
T Consensus       165 ~~l~~~~--~w~~~f~~~~~  182 (496)
T PRK03893        165 SLVVPVW--GWRALFFIGIL  182 (496)
T ss_pred             HHHhccC--CHHHHHHHHHH
Confidence            6665554  45555655433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.90  E-value=5.1e-21  Score=172.83  Aligned_cols=244  Identities=15%  Similarity=0.170  Sum_probs=154.0

Q ss_pred             HHHHHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHH
Q 018113           48 LMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKI  126 (360)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~  126 (360)
                      +.....+...|++|.+.+|+|.|+++.|++.+...++..+++++.|+++||+|||+++..+.++.+++. .+++++|++.
T Consensus        17 ~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~   96 (381)
T PRK03633         17 LLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWS   96 (381)
T ss_pred             HHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            333334444788999999999999999999999999999999999999999999999999999998877 7788999999


Q ss_pred             HHHHHHHHHhHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhh
Q 018113          127 LMIGRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAA  204 (360)
Q Consensus       127 l~~~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~  204 (360)
                      ++++|+++|++.+...+.....+..+.  ++|++..+..    ..+..    +|..+++.+++.+.+..  .+...+...
T Consensus        97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~g~~~g~~~~~~l~~~~--~~~~~~~~~  166 (381)
T PRK03633         97 WLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAY----MMVYY----LGTVLGQLLVSKVSTEL--MSVLPWVTG  166 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH----HHHHH----HHHHHHHHHHhcccccc--cchHHHHHH
Confidence            999999999999988777655333222  4555533332    32333    44444444444433321  111222211


Q ss_pred             HHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch-
Q 018113          205 ACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH-  283 (360)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  283 (360)
                       ............+.++++++ ++++       ++.++.+|+|+.+..... .+.....+.....+.|.|.++. +.+. 
T Consensus       167 -~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lp~~~~~~-g~s~~  235 (381)
T PRK03633        167 -LVLAAILPLLFTRILNQQAE-NHDS-------TSIWPMLKLRQARLGVNG-CIISGIVLGSLYGLMPLYLNHQ-GMSDA  235 (381)
T ss_pred             -HHHHHHHHHHHhcccCCCCC-CCCC-------CCHHHHHHhcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHc-CCCHH
Confidence             11111111111222222111 1110       122345667766643222 2222222232455678777653 4443 


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          284 --GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       284 --~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                        +...+...++.++++...+++.||+++|+
T Consensus       236 ~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~  266 (381)
T PRK03633        236 SIGFWMALLVSAGILGQWPIGRLADRFGRLL  266 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH
Confidence              45666777889999999999999999984

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.90  E-value=4.4e-21  Score=174.43  Aligned_cols=245  Identities=16%  Similarity=0.063  Sum_probs=148.5

Q ss_pred             HHHHHHHHhhhhhHHHHH-HHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHh--
Q 018113           45 VYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH--  120 (360)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~--  120 (360)
                      ..++..+..++..|.+|. +.+++|.|+.+.|++.+...++..+.+++.|+++||+||||++..+.++.+++. .+.+  
T Consensus        23 ~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~  102 (399)
T PRK05122         23 FTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAG  102 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhh
Confidence            334444555555777776 568899999999999999999999999999999999999999999998887754 3322  


Q ss_pred             -cc-----hHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 018113          121 -SP-----QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD  191 (360)
Q Consensus       121 -~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~  191 (360)
                       .+     ++..+++.|+++|++.+...+.... ++.|.   ++|++..+......    .    +|..+++.+++.+.+
T Consensus       103 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~----~----~g~~~g~~l~~~l~~  173 (399)
T PRK05122        103 LLAAWPVLSLLLLLLGRLLLGIGESLAGTGSIL-WGIGRVGALHTGRVISWNGIAT----Y----GALAIGAPLGVLLYH  173 (399)
T ss_pred             hhhccchhHHHHHHHHHHHHHhhHHhhcchHHH-HHHhhcChhhhccchhhhhhhh----h----HHHHHHHHHHHHHHH
Confidence             22     5668899999999999988787755 55554   56666444333222    2    344455555555555


Q ss_pred             ccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhh
Q 018113          192 SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWT  271 (360)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (360)
                      ..+  |+..+.+...+.++..+.. ...|++++++++ +   ++.+    +.+|+  .+.......+... .+.....+.
T Consensus       174 ~~g--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~---~~~~----~~~~~--~~~~~~~~~~~~~-~~~~~~~~~  239 (399)
T PRK05122        174 WGG--LAGLGLLIMLLALLGLLLA-RPRPAVPPVKGE-R---LPFR----RVLGR--VWPYGMGLALASI-GFGTIATFI  239 (399)
T ss_pred             ccc--HHHHHHHHHHHHHHHHHHH-hcCCCCCCCCcc-c---hhHH----HHHHH--HHHHHHHHHHHHH-HHHHHHHHH
Confidence            444  5555555444443333322 222322211111 1   1111    11221  1111111111111 122234556


Q ss_pred             ccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          272 PALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      |.|.++....+.+.......++.+++++..+++.||+++|+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~  280 (399)
T PRK05122        240 TLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLR  280 (399)
T ss_pred             HHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            66554432222355566777888899999999999999874

>PRK10504 putative transporter; Provisional

Probab=99.90  E-value=2.3e-21  Score=180.06  Aligned_cols=256  Identities=14%  Similarity=0.062  Sum_probs=166.0

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      .+..|.+.+|+|.|+.+.+++.+...++..++.++.|+++||+|||++++.+..+.+++. ++.++++++.+++.|+++|
T Consensus        30 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g  109 (471)
T PRK10504         30 NTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQG  109 (471)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            567999999999999999999888888888899999999999999999999988888876 6778899999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      ++.+...+.... ++.|.   ++|+...    +...    .+..+|..+++.+++.+.++.+  |+..|........+..
T Consensus       110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~----~~~~~g~~~g~~~~g~l~~~~g--w~~~f~~~~~~~~l~~  178 (471)
T PRK10504        110 VGGAMMVPVGRL-TVMKIVPREQYMAAM----TFVT----LPGQVGPLLGPALGGLLVEYAS--WHWIFLINIPVGIIGA  178 (471)
T ss_pred             hhhHHHHHHHHH-HHHHHcCHHHHHHHH----HHHH----HHHHHHHHhhhHHHHHHHhhcc--HHHHHHHHHHHHHHHH
Confidence            999998887744 67775   2333322    1222    2223555666666666666544  5566666555444444


Q ss_pred             HHHhhhhccccCCCCcchhH-------------------------H-------------------HHHHH----HHHHHh
Q 018113          213 VIILSSWTENYGDPSESKDL-------------------------L-------------------TQFRG----AAVAIA  244 (360)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~-------------------------~-------------------~~~~~----~~~~~~  244 (360)
                      +......|+.+.++.+.+..                         .                   ++.+.    ...+++
T Consensus       179 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  258 (471)
T PRK10504        179 IATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLF  258 (471)
T ss_pred             HHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHh
Confidence            43322223222111110000                         0                   00000    012467


Q ss_pred             cchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 018113          245 SDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFV  321 (360)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  321 (360)
                      |||++........+.... +.....+.|.|.+...+.++   +.......++.+++.++.+++.||+|+|+  .+..+..
T Consensus       259 ~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~--~~~~~~~  335 (471)
T PRK10504        259 RTRTFSLGLAGSFAGRIG-SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRR--VLVATTL  335 (471)
T ss_pred             cccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH--HHHHHHH
Confidence            788877765544444443 33345667777765555554   45556667777888899999999999984  4444444


Q ss_pred             HHHHH
Q 018113          322 VSSVS  326 (360)
Q Consensus       322 ~~~~~  326 (360)
                      ...+.
T Consensus       336 ~~~~~  340 (471)
T PRK10504        336 GLALV  340 (471)
T ss_pred             HHHHH
Confidence            34333

>TIGR00895 2A0115 benzoate transport

Probab=99.90  E-value=2.9e-21  Score=175.27  Aligned_cols=264  Identities=21%  Similarity=0.258  Sum_probs=164.2

Q ss_pred             cchhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHH
Q 018113           36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT  111 (360)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~  111 (360)
                      +++++..+..+....+.++++    .+..|.+.+++|.++.+.+.+.+...++..+++++.|+++||+|||+.+..+.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   91 (398)
T TIGR00895        12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL   91 (398)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            344555555555555555544    4558899999999999999999999998999999999999999999999999988


Q ss_pred             HHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018113          112 YILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN  187 (360)
Q Consensus       112 ~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  187 (360)
                      .+++. +..++++++.+++.|++.|++.+...+.... ++.|.   ++|++..+....        +..+|..+++.+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~--------~~~~g~~~~~~~~~  162 (398)
T TIGR00895        92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNA-LVSEYAPKRFRGTAVGLMFC--------GYPIGAAVGGFLAG  162 (398)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHH-HHHHHcCHHhhchhHhhHhh--------HHHHHHHHHHHHHH
Confidence            88877 6778899999999999999999988887755 77776   456664433322        22345555555555


Q ss_pred             hhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccC----C-CCc----------------------chhHHHHHHHHH
Q 018113          188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYG----D-PSE----------------------SKDLLTQFRGAA  240 (360)
Q Consensus       188 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~----------------------~~~~~~~~~~~~  240 (360)
                      .+.+..+|+  ..+...+.+..+.........||+++    + +++                      .++..++.++..
T Consensus       163 ~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (398)
T TIGR00895       163 WLIPVFGWR--SLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVF  240 (398)
T ss_pred             HHhhcccce--eehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHH
Confidence            555554444  55555433333333332223333211    0 000                      000000011111


Q ss_pred             HHHhcc---hhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          241 VAIASD---EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       241 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      +..+++   ++.+.......+. ...+.....+.|.+.++ .+.+.   +.......++.++++++.+++.||+++|+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  316 (398)
T TIGR00895       241 KALFQGKTARITVLLWLLYFML-LVGVYFLTNWLPKLMVE-LGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV  316 (398)
T ss_pred             HHHhcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence            222222   2222222222222 22333346677744433 34433   46667778889999999999999999873

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.89  E-value=1e-20  Score=171.48  Aligned_cols=263  Identities=18%  Similarity=0.203  Sum_probs=156.8

Q ss_pred             ccchhHHHHHHHHHHHHHhhhhhHHHHH-HHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHH-HHHHHH
Q 018113           35 FNSFKNNYLLVYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV-TYCLTY  112 (360)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~-~~~~~~  112 (360)
                      .+...+.++...++.........|.+|. +.+|+|.|++++|.+.+...+.+.+.+++.|..+||+||||.++ .+.+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~   92 (393)
T PRK15011         13 FDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLG   92 (393)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence            3445566666666666666666777555 56889999999999987776667766666555599999998755 445555


Q ss_pred             HHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 018113          113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV  190 (360)
Q Consensus       113 ~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~  190 (360)
                      +++. +.+++++++.+++.+.+.|...+...+.... +..|. ++|++..........    .+..+|..+++.+++.+.
T Consensus        93 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~lg~~~g~~i~~~l~  167 (393)
T PRK15011         93 VLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFA-LAREHADKTGREAVMFSSFLR----AQVSLAWVIGPPLAYALA  167 (393)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHhhhccchHHHHHHHHH----HHHHHHHHHhhHHHHHHH
Confidence            5555 6678889988766655544444455565544 66665 444442222222222    333456666677777666


Q ss_pred             cccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchh-HHHHHHHHHHHHhhHHHHHHh
Q 018113          191 DSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEK-IALLGAIQSLFEGSMYTFVFL  269 (360)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  269 (360)
                      ++.  +||..|...+...++..+......||.++++++.++..+       ...++++ .+.......... ..+.....
T Consensus       168 ~~~--gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  237 (393)
T PRK15011        168 MGF--SFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATGTLE-------APRRNRRDTLLLFVICTLMW-GTNSLYII  237 (393)
T ss_pred             Hhc--ChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccccccc-------ccccccccHHHHHHHHHHHH-HHHHHHHH
Confidence            554  566777777666555554443445554332221111101       1122322 222222222222 22332456


Q ss_pred             hhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          270 WTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       270 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      +.|.|.+++.+.+.   +.......+..+++.++.|+++||+++|+
T Consensus       238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~  283 (393)
T PRK15011        238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF  283 (393)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            78888877666665   34445556667888999999999999985

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.89  E-value=1.6e-21  Score=180.87  Aligned_cols=266  Identities=13%  Similarity=0.001  Sum_probs=178.7

Q ss_pred             ccchhHHHHHHHHHHHHHhhhh----hHHHHHHHH----------------------hhCCChhhhHHHHHHHHHHHhhh
Q 018113           35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYS----------------------TYGFGKGEIGQLFIAGFGSSMLF   88 (360)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----------------------~~g~s~~~~g~~~~~~~~~~~~~   88 (360)
                      +.+.|+.+....+.....+..+    +...+.+.+                      |++++..+.|.+.+...++..++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            4556666666666666665555    111334444                      78999999999999999999999


Q ss_pred             hhhhhhhhhhhcchHHHHHHHHHHHHHH-HHH--hcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHH
Q 018113           89 GTIVGSLADKQGRKRACVTYCLTYILSC-ITK--HSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQW  162 (360)
Q Consensus        89 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~--~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~  162 (360)
                      +++.|+++||+|||+++..+.++.+++. ++.  ..+++..+++.|+++|++.+...+.... +++|+   ++|++..+.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~  171 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHK-IIVKWAPPKERSRLLGM  171 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHH-HHHhcCCHHHHHHHHHH
Confidence            9999999999999999999998888866 443  3466888999999999999999888855 88887   455553322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCC-cchhHHHHH-----
Q 018113          163 LSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPS-ESKDLLTQF-----  236 (360)
Q Consensus       163 ~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----  236 (360)
                      .        ..+..+|..+++.+.+.+.+.. .+|+..|.+.+++.++..+......+|++++++ +.+++.+..     
T Consensus       172 ~--------~~~~~~g~~i~~~l~~~l~~~~-~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~  242 (465)
T TIGR00894       172 S--------TSGFQLGTFIFLPISGWLCESW-GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQ  242 (465)
T ss_pred             H--------HHHHHHHHHHHHHHHHHHHhcc-CCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcc
Confidence            2        2233456666666666666542 145566766655554443333222222221111 111111100     


Q ss_pred             --------HHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHH
Q 018113          237 --------RGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLM  305 (360)
Q Consensus       237 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~  305 (360)
                              +..+++++++++++.......+.....+. ...|.|.|+++..+.+.   +...+...++.+++.++.|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~  321 (465)
T TIGR00894       243 GQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTI-LPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLA  321 (465)
T ss_pred             cccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence                    11356788888888877666665555554 57899999887666654   5666777888999999999999


Q ss_pred             hhcCCC
Q 018113          306 ARSPPR  311 (360)
Q Consensus       306 dr~g~~  311 (360)
                      ||.++|
T Consensus       322 d~~~~~  327 (465)
T TIGR00894       322 DFLKSS  327 (465)
T ss_pred             HHHHHc
Confidence            997644

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.89  E-value=7.3e-21  Score=172.20  Aligned_cols=256  Identities=16%  Similarity=0.105  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HH
Q 018113           40 NNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT  118 (360)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~  118 (360)
                      +.+....++..+.+.......+.+.+|+|.++.+.+++.+...+...+.+++.|+++||+||||+++.+.++.+++. ++
T Consensus         6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~   85 (393)
T PRK11195          6 YAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM   85 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence            34444445555555555444666789999999999999999999999999999999999999999999999988866 55


Q ss_pred             HhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 018113          119 KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL  195 (360)
Q Consensus       119 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~  195 (360)
                      .++++.   ++.|+++|++.+...|...+ ++.|.   ++|++..+.....    ..    ++..++|.+++.+.+.   
T Consensus        86 ~~~~~~---~~~r~l~G~~~a~~~pa~~a-~i~~~~~~~~~~~a~~~~~~~----~~----~~~~~Gp~lgG~l~~~---  150 (393)
T PRK11195         86 LFGIHP---LLAYGLVGIGAAAYSPAKYG-ILTELLPGEKLVKANGWMEGS----TI----AAILLGTVLGGALADP---  150 (393)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHH---
Confidence            555553   77899999999999998866 88876   5566644433322    22    4445555555555442   


Q ss_pred             CCchhhhhhHHHHHHHHHHHhhhhccccCCCCc----chhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhh
Q 018113          196 GPVAPFDAAACFLAIGMVIILSSWTENYGDPSE----SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWT  271 (360)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (360)
                      .|+..+.+.....++..+.. ...||+++++++    .++..++..+..+.++++|..........+....... .....
T Consensus       151 ~~~~~~~i~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~  228 (393)
T PRK11195        151 HAEAALAVCALIYLLAALFN-LFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGAT-LRFLV  228 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHH-HHHHH
Confidence            35555555444333332222 344543322111    1111233334456778888766543333333322222 23334


Q ss_pred             ccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          272 PALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       272 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      |.|.++..+.++   +.......++.+++++..+++.||.++++
T Consensus       229 ~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~  272 (393)
T PRK11195        229 LAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR  272 (393)
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            445554445444   56677778899999999999999988774

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.89  E-value=2.1e-21  Score=177.57  Aligned_cols=269  Identities=16%  Similarity=0.101  Sum_probs=173.0

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHH-
Q 018113           42 YLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK-  119 (360)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~-  119 (360)
                      +....++..+..+...+.+|.+.++++.++.+.|++.+...+...+++++.|+++||+|||+++..+..+.+++. ..+ 
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~  101 (417)
T PRK10489         22 VFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLAL  101 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHH
Confidence            333445555666666777899999999999999999999999999999999999999999999998877776654 222 


Q ss_pred             ----hcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 018113          120 ----HSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS  192 (360)
Q Consensus       120 ----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~  192 (360)
                          ..++++.+.+.|++.|++.+...+.... ++.|.   ++|++..+..    .    .+..+|..+++.+++.+.+.
T Consensus       102 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~----~~~~~g~~~g~~l~g~l~~~  172 (417)
T PRK10489        102 NAFLPEPSLLAIYLLGLWDGFFGSLGVTALLA-ATPALVGRENLMQAGAIT----M----LTVRLGSVISPALGGLLIAA  172 (417)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhh-hhhhccCHHHHHHHHHHH----H----HHHhHHHHhHHHHHHHHHHH
Confidence                2567888999999999988877666645 66665   3344422222    2    22335555666666665555


Q ss_pred             cCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhc
Q 018113          193 FSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP  272 (360)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (360)
                      .+|+|.  +.......++..+.. .+.|+++++++++++..++.++..+..+++|.++...+...+. ..... ...+.|
T Consensus       173 ~~~~~~--~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~p  247 (417)
T PRK10489        173 GGVAWN--YGLAAAGTFITLLPL-LRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLL-TMASA-VRVLYP  247 (417)
T ss_pred             HhhHHH--HHHHHHHHHHHHHHH-HhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHH-HHHHh-HHHhhH
Confidence            555554  544444444333333 3445443322222222334444556677888766544333332 22223 466788


Q ss_pred             cccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHH
Q 018113          273 ALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS  326 (360)
Q Consensus       273 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  326 (360)
                      .|.++..+.+.   +...+...++.+++.++.+++.||.+++  +.+..+.....+.
T Consensus       248 ~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~--~~l~~~~~~~~~~  302 (417)
T PRK10489        248 ALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG--LLMLLSTLGSFLA  302 (417)
T ss_pred             HHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc--hHHHHHHHHHHHH
Confidence            88877666554   4666777888999999999999986555  3344444433333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.89  E-value=1.6e-21  Score=175.73  Aligned_cols=243  Identities=13%  Similarity=0.101  Sum_probs=166.1

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      ++..|.+.+++|.|+++.|++.+...++..+++++.|+++||+|||+++..+.++.+++. +..++++++.+++.|++.|
T Consensus        15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   94 (379)
T TIGR00881        15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNG   94 (379)
T ss_pred             hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            455889999999999999999999999999999999999999999999999999998877 7788899999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhcccCCCCchhhhhhHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG-LFGNLLVDSFSLGPVAPFDAAACFLAIG  211 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~  211 (360)
                      ++.+...+...+ ++.|.   ++|++..+.......        +|..+++ .++..+.+..  +|+..+.+.+.+.++.
T Consensus        95 ~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  163 (379)
T TIGR00881        95 IFQGMGWPPCGR-TVTKWFSRSERGTWVSFWNCSHN--------VGGGLLPPLVLFGIAELY--SWHWVFIVPGIIAIIV  163 (379)
T ss_pred             hhccccCCchHH-HHHHhcCHhhheeeEeehhccch--------hHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHH
Confidence            999988887755 77776   456665444433333        3334444 2333333333  4555666655544443


Q ss_pred             HHHHhhhhccccCCC----------Cc-------chhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccc
Q 018113          212 MVIILSSWTENYGDP----------SE-------SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL  274 (360)
Q Consensus       212 ~~~~~~~~~~~~~~~----------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (360)
                      .+......+|+++++          ++       +++..++.+...++.+++|.++...+...+....... ...+.|.|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  242 (379)
T TIGR00881       164 SLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTG-ILDWSPLY  242 (379)
T ss_pred             HHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            333322333221100          00       0000011122345677888888776665555544444 57788888


Q ss_pred             cCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018113          275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPR  311 (360)
Q Consensus       275 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~  311 (360)
                      .++..+.+.   +.......++.++++++.+++.||..+|
T Consensus       243 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  282 (379)
T TIGR00881       243 LTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNG  282 (379)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCC
Confidence            877666554   4666777888999999999999986443

>PRK11043 putative transporter; Provisional

Probab=99.89  E-value=2.1e-20  Score=170.04  Aligned_cols=240  Identities=12%  Similarity=0.062  Sum_probs=161.1

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      .|..|.+.+++|.++++.++..+...++..+++++.|+++||+|||+++..+..+..++. ++.++++++.+++.|+++|
T Consensus        26 ~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  105 (401)
T PRK11043         26 LPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQA  105 (401)
T ss_pred             HhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            577888899999999999999999999999999999999999999999999998888877 7788899999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII  215 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (360)
                      ++.+...+.... ++.|..++.+...... ...    .+..++..+++.+++.+.+..+  |+..+.....+.++.....
T Consensus       106 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~g~~i~~~l~~~~g--~~~~~~~~~~~~~~~~~~~  177 (401)
T PRK11043        106 VGVCSAAVIWQA-LVIDRYPAQKANRVFA-TIM----PLVALSPALAPLLGAWLLNHFG--WQAIFATLFAITLLLILPT  177 (401)
T ss_pred             hhhHHHHHHHHH-HHHHhcCcHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHH
Confidence            988777665544 6666522222111111 111    1223555666666666666544  5566666555554444333


Q ss_pred             hhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHH
Q 018113          216 LSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFML  292 (360)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  292 (360)
                       ...+|+++++++ +    +.+.+.++++|+|+.+.......+.....+. ...+.|.+.++ .+.+.   +.......+
T Consensus       178 -~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~-~g~s~~~~g~~~~~~~~  249 (401)
T PRK11043        178 -LRLKPSKKARKQ-S----QDALTFKQLLKSKTYLGNVLIFAACSAAFFA-WLTGSPFILEQ-MGYSPADIGLSYVPQTI  249 (401)
T ss_pred             -HHcCCCCCcccc-c----hHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HHHHhHHHHHH-cCCCHHHHHHHHHHHHH
Confidence             233333222111 1    1123455778888877654444443333333 35667777654 35544   444455567


Q ss_pred             HHHHHHHHHHHHHhhcCCCh
Q 018113          293 ASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       293 ~~~~~~~~~g~l~dr~g~~~  312 (360)
                      +.++++...+++.||+++|+
T Consensus       250 ~~~~g~~~~~~l~~r~~~~~  269 (401)
T PRK11043        250 AFLVGGYGCRAALQKWGGEQ  269 (401)
T ss_pred             HHHHHHHHHHHHHHHcCHHH
Confidence            78889999999999998875

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.89  E-value=3.7e-20  Score=172.49  Aligned_cols=178  Identities=16%  Similarity=0.140  Sum_probs=123.1

Q ss_pred             chhHHHHHHHHHHHHHhhhh----hHHHHHHHHhh--------CCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHH
Q 018113           37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTY--------GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA  104 (360)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~  104 (360)
                      +++.+...++.+..+.++++    ++..|.+.+++        +.++.+.+++.+...++..+++++.|+++||+|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~   87 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            44555666666677778777    34567777776        8889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-HHHhc------------chHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHH
Q 018113          105 CVTYCLTYILSC-ITKHS------------PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFS  168 (360)
Q Consensus       105 l~~~~~~~~~~~-l~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~  168 (360)
                      +..+.++.+++. .++++            ++++.++++|+++|++.|...+.... +++|.   ++|++..+..+... 
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~-~i~e~~~~~~rg~~~~~~~~~~-  165 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPM-YIAEIAPAHIRGKLVSFNQFAI-  165 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHH-HHHhhCChhhhhHHHHHHHHHH-
Confidence            999999988766 44442            22567889999999999999888855 88887   56777554444333 


Q ss_pred             HHHHHHHHHHHHHHhhhhh----hhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccc
Q 018113          169 KAIFLGNGLVAILSGLFGN----LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTEN  222 (360)
Q Consensus       169 ~~~~~g~~~g~~~~~~l~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (360)
                         .+|..++..++..+..    ...+  .++||..|++.++..++..+.. ...||+
T Consensus       166 ---~~G~~~~~~~~~~~~~~~~~~~~~--~~gWr~~f~~~~~~~~~~~~~~-~~l~~s  217 (479)
T PRK10077        166 ---IFGQLVVYFVNYFIARSGDASWLN--TDGWRYMFASEAIPALLFLMLL-YFVPET  217 (479)
T ss_pred             ---HHHHHHHHHHHHHHhccCcccccc--cCChHHHHHHHHHHHHHHHHHH-HcCCCC
Confidence               3333333333322211    1112  3567777877665555544333 445554

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.89  E-value=1.6e-20  Score=169.50  Aligned_cols=266  Identities=13%  Similarity=0.077  Sum_probs=170.4

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHH-H-HH-HHHhc
Q 018113           45 VYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI-L-SC-ITKHS  121 (360)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~-~-~~-l~~~~  121 (360)
                      ..+......+...|++|.+.+|+|.|.+++|.+.+...+...+.+++.|+++||+|||+.......... + .. .+..+
T Consensus        12 ~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~   91 (382)
T TIGR00902        12 GFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGA   91 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444445666899999999999999999999999999999999999999999998554322221111 1 12 33467


Q ss_pred             chHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchh
Q 018113          122 PQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAP  200 (360)
Q Consensus       122 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~  200 (360)
                      ++++.+++.|.++|.+.+...|.... +..|+ ++|++..+.....        ..+|..+++.+++.+.++.||+  ..
T Consensus        92 ~~~~~l~~~~~l~~~~~~~~~p~~~a-l~~~~~~~~~~~~g~~~~~--------~slG~~~g~~l~g~l~~~~g~~--~~  160 (382)
T TIGR00902        92 HNAWLLFIAIGLFALFFSAGMPIGDA-LANTWQKQFGLDYGKVRLI--------GSAAFIIGSALFGGLIGMFDEQ--NI  160 (382)
T ss_pred             hhHHHHHHHHHHHHHHHccchhHHHH-HHHHHHHHcCCCccHHHHH--------HHHHHHHHHHHHHHHHHHcChh--HH
Confidence            89999999999999988887787755 55554 5566644333322        2266667777777777665555  55


Q ss_pred             hhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCC
Q 018113          201 FDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE  280 (360)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (360)
                      |.+......+..... ...++.+++++++++ .++..++.++++|||+++.......+.+..... ...+.|.|.++ .+
T Consensus       161 f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~-~~~~~~~~l~~-~g  236 (382)
T TIGR00902       161 LAILTAGLAFMLIGF-LIKPTIPPKDAIPED-ESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAA-YYGFSAIYWQA-AG  236 (382)
T ss_pred             HHHHHHHHHHHHHHH-HcCCCCCCCcccccc-ccccchhHHHHHcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-CC
Confidence            655443322222222 212221111111111 111122355788999998887766666655545 46678888766 45


Q ss_pred             cch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHH
Q 018113          281 IPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSL  327 (360)
Q Consensus       281 ~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  327 (360)
                      .+.   +.......+..+++....+++.||+|+|+  .+..+.....+..
T Consensus       237 ~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~--~l~~~~~~~~~~~  284 (382)
T TIGR00902       237 ISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD--LLLISAIACVGRW  284 (382)
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH--HHHHHHHHHHHHH
Confidence            554   55666677888889999999999999884  4444444444433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10054 putative transporter; Provisional

Probab=99.89  E-value=1.4e-20  Score=170.39  Aligned_cols=258  Identities=14%  Similarity=0.074  Sum_probs=161.1

Q ss_pred             hhHHHHHHHHHHHHHhhhhhHHHH-HHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 018113           38 FKNNYLLVYSLMMAGDWLQGPYVY-YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC  116 (360)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~  116 (360)
                      ..+.+....++.....+...|++| ++.+++|+|+.++|+..+...+...+.+++.|+++||+|||+++..+.+...++.
T Consensus         8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~   87 (395)
T PRK10054          8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGF   87 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHH
Confidence            334444445555555565667755 5567899999999999999999899999999999999999999999998888877


Q ss_pred             -HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 018113          117 -ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS  192 (360)
Q Consensus       117 -l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~  192 (360)
                       +..++++++.++++|.+.|.+.+...+.... +..|.   ++|++..+....    ..+    +|..++|.+++.+.+ 
T Consensus        88 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~----~~~----lg~~igp~l~~~l~~-  157 (395)
T PRK10054         88 IAIPLVNNVTLVVLFFALINCAYSVFSTVLKA-WFADNLSSTSKTKIFSLNYT----MLN----IGWTVGPPLGTLLVM-  157 (395)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCHhHHHHHHHHHHH----HHH----HHHHHHHHHHHHHHH-
Confidence             6778899998888998888877766666544 66654   345553333222    222    444555555555443 


Q ss_pred             cCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhc
Q 018113          193 FSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP  272 (360)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (360)
                        .+|+..|...+.+.++..+......++++++++++++  ++  .+.++.+|||+++.......+....... ...+.+
T Consensus       158 --~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~  230 (395)
T PRK10054        158 --QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATETG--SV--WSPSVLLQDKALLWFTCSGFLASFVSGA-FASCIS  230 (395)
T ss_pred             --hccCcHHHHHHHHHHHHHHHHHHHHhccccccccchh--hh--hhhhhhccCceehHHHHHHHHHHHHHHH-hhhhHH
Confidence              2455677766655555444433334443322211111  11  1235678888888766555544433222 223334


Q ss_pred             cccC--CCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          273 ALSP--NDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       273 ~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      .|..  ++.+.+.   +.......+..+......+++.||.++|+
T Consensus       231 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  275 (395)
T PRK10054        231 QYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRP  275 (395)
T ss_pred             HHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchh
Confidence            3332  1222222   34445555556666778899999998884

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.89  E-value=2e-20  Score=174.85  Aligned_cols=186  Identities=15%  Similarity=0.034  Sum_probs=129.8

Q ss_pred             CcccccchhHHHHHHHHHHHHHhhhh----hHHHHHHHHhh-----CCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 018113           31 TSSAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTY-----GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR  101 (360)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-----g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr  101 (360)
                      |+.+..++++....++.+..+.++++    +...|.+.+++     +.++.+.+++.+...++..+++++.|+++||+||
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Gr   85 (502)
T TIGR00887         6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGR   85 (502)
T ss_pred             hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            44566777888888888888888888    23356555542     3455667888899999899999999999999999


Q ss_pred             hHHHHHHHHHHHHHH-HHHhcch------HHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHH
Q 018113          102 KRACVTYCLTYILSC-ITKHSPQ------YKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAI  171 (360)
Q Consensus       102 r~~l~~~~~~~~~~~-l~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~  171 (360)
                      |+++..+.++..++. +++++++      ++.++++|++.|++.+...+.... +++|.   ++|++..+.......   
T Consensus        86 r~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~-~~~e~~p~~~Rg~~~~~~~~~~~---  161 (502)
T TIGR00887        86 KRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAI-ITSEFATKKWRGAMMAAVFAMQG---  161 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhcChhhHHHHHHHHHHHHH---
Confidence            999999999888876 6666655      788999999999999999888744 88887   677775555444444   


Q ss_pred             HHHHHHHHHHHhhhhhhhhc-----------------ccCCCCchhhhhhHHHHHHHHHHHhhhhccc
Q 018113          172 FLGNGLVAILSGLFGNLLVD-----------------SFSLGPVAPFDAAACFLAIGMVIILSSWTEN  222 (360)
Q Consensus       172 ~~g~~~g~~~~~~l~~~l~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (360)
                       +|..+++.++..+.....+                 ..+|+||.++.+.++..++..+.. +..||+
T Consensus       162 -~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~-~~lpES  227 (502)
T TIGR00887       162 -FGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR-LTIPET  227 (502)
T ss_pred             -HHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence             3333444443332221110                 124678888876665555444443 445554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.88  E-value=1.3e-20  Score=173.75  Aligned_cols=267  Identities=9%  Similarity=0.066  Sum_probs=169.9

Q ss_pred             CCCcccccchhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHH
Q 018113           29 INTSSAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA  104 (360)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~  104 (360)
                      ++++++.+.++|.++..++........+    +.+.|.+.+++|.|.++.+++.+.......+++++.|+++||+|||++
T Consensus         7 ~~~~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~   86 (455)
T TIGR00892         7 PEGPPPDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPV   86 (455)
T ss_pred             CCCCCCCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHH
Confidence            3444455667787777666665543333    455889999999999999999999888888999999999999999999


Q ss_pred             HHHHHHHHHHHH-HHHhcchHHHHHH-HHHHHHhHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHH
Q 018113          105 CVTYCLTYILSC-ITKHSPQYKILMI-GRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAI  180 (360)
Q Consensus       105 l~~~~~~~~~~~-l~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~  180 (360)
                      ++.+.++.+++. +++++++++.+++ .|++.|++.+...+.... ++.++  ++|++..+...        .+..+|..
T Consensus        87 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~-~~~~~~~~~r~~a~g~~~--------~~~~~g~~  157 (455)
T TIGR00892        87 VIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLT-MLGKYFYRRRPLANGLAM--------AGSPVFLS  157 (455)
T ss_pred             HHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHH-HHHHHHHhhHHHHHHHHH--------hcccHHHH
Confidence            999998888877 7788889888765 579999998876555534 55555  45555333222        23335556


Q ss_pred             HHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhc--ccc---CCC--C----cch-hH------HHHHHHH-HH
Q 018113          181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWT--ENY---GDP--S----ESK-DL------LTQFRGA-AV  241 (360)
Q Consensus       181 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~--~----~~~-~~------~~~~~~~-~~  241 (360)
                      +++.+++.+.+..  +||..|++.+++.++..+......+  +++   +++  +    +.. +.      .++..+. ..
T Consensus       158 ~~~~l~~~l~~~~--gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (455)
T TIGR00892       158 TLAPLNQYLFESF--GWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDF  235 (455)
T ss_pred             HHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcch
Confidence            6666666666554  4556776666554433322211111  110   000  0    000 00      0011110 12


Q ss_pred             HHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhc
Q 018113          242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS  308 (360)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~  308 (360)
                      +++++|+++.......+.....+. ...+.|.|.++ .+.+.   +...+...++.++++++.+++.||.
T Consensus       236 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       236 SLFTHRGFLVYLSGNVIMFLGFFA-PIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             HHhcCchHHHHHHHHHHHHHHccc-hHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            467888887765554444444333 45677777655 34444   4666777888889999999999984

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.88  E-value=6.3e-20  Score=166.49  Aligned_cols=253  Identities=16%  Similarity=0.110  Sum_probs=160.4

Q ss_pred             HHHHHHHHHHHHhhhhhHHHH-HHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HH
Q 018113           41 NYLLVYSLMMAGDWLQGPYVY-YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT  118 (360)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~  118 (360)
                      ..+...++.........|+++ ++.+++|.|+.++|...+...+...+.+++.|+++||+|||+++..+.+..+++. ++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~   93 (400)
T PRK11646         14 FLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM   93 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            344444455555555567755 4568899999999999999999888999999999999999999999999999977 67


Q ss_pred             HhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 018113          119 KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL  195 (360)
Q Consensus       119 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~  195 (360)
                      .++++++.+.+.|+++|++.+...+...+ ++.|.   ++|++..+......    .    +|..+++.+++.+. .  +
T Consensus        94 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~----~----~g~~ig~~l~g~l~-~--~  161 (400)
T PRK11646         94 AIAHEPWLLWLSCILSGLGGTLFDPPRTA-LVIKLIRPHQRGRFFSLLMMQD----S----AGAVIGALLGSWLL-Q--Y  161 (400)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHH-H--h
Confidence            78899999999999999998877776655 66654   55666444333333    3    34444444444444 2  3


Q ss_pred             CCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhcccc
Q 018113          196 GPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS  275 (360)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (360)
                      +|+..|++.+...++..+......||.++++ +.    ++.+++.++.++||+++............... ...+.|.|.
T Consensus       162 g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~  235 (400)
T PRK11646        162 DFRLVCATGAVLFVLAAAFNAWLLPAYKLST-VR----TPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQ-VMLMLPIMV  235 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCcccccc-cc----hhhHHHHHHHHcCchHHHHHHHHHHHHHHHHH-HHHhhhhhH
Confidence            5667777666555444433323334322111 11    12233455778888877654443333222222 355778887


Q ss_pred             CCCCCcch--hHHHHHHHHHHHHHHHHHHHHHhh-cCCC
Q 018113          276 PNDEEIPH--GFIFATFMLASMLGSSLASRLMAR-SPPR  311 (360)
Q Consensus       276 ~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr-~g~~  311 (360)
                      ++..+.+.  +...+...+....+....+++.|| .+.+
T Consensus       236 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~  274 (400)
T PRK11646        236 NDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLE  274 (400)
T ss_pred             HhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence            76555333  445555555555555555666554 4444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.88  E-value=1.7e-21  Score=184.97  Aligned_cols=263  Identities=13%  Similarity=0.123  Sum_probs=175.1

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcc-------------
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP-------------  122 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~-------------  122 (360)
                      .+.++.+.++|+++.++.|++.+...++..+..++.|++.||+||||.+.++.++++++. +.++.+             
T Consensus        53 ~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~  132 (633)
T TIGR00805        53 NSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS  132 (633)
T ss_pred             HhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence            566899999999999999999999999999999999999999999999999999999987 555432             


Q ss_pred             --------------------------------------hHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhH
Q 018113          123 --------------------------------------QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQ  161 (360)
Q Consensus       123 --------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~  161 (360)
                                                            .+..++++|+++|+|.+..++...+ ++.|+   ++|+...+
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~-~i~d~~~~~~~~~~~~  211 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS-YIDDFAKSKNSPLYIG  211 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch-hhhccCCccccHHHHH
Confidence                                                  2456788999999999999998866 88887   45566444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhc------------ccCCC----CchhhhhhHHHHHHHHHHHhhhhccccCC
Q 018113          162 WLSITFSKAIFLGNGLVAILSGLFGNLLVD------------SFSLG----PVAPFDAAACFLAIGMVIILSSWTENYGD  225 (360)
Q Consensus       162 ~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (360)
                      ......    .+|..+|.++++.+.....+            ..++|    |+..|++.+++.++..+.. ...|++.++
T Consensus       212 i~~~~~----~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l-~~~p~~lp~  286 (633)
T TIGR00805       212 ILESIA----VFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF-FFFPKALPK  286 (633)
T ss_pred             HHHHHH----HhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HhCccccCC
Confidence            433333    33333444444333322111            11223    4556766665555444333 233332111


Q ss_pred             C---C-----cc-------h-------hHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch
Q 018113          226 P---S-----ES-------K-------DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH  283 (360)
Q Consensus       226 ~---~-----~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (360)
                      +   +     +.       +       +..++..+..+++++||.++...+...+.....+. ...|.|.|++++++.++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~-~~~~lP~yl~~~~g~s~  365 (633)
T TIGR00805       287 EGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNG-YITFLPKYLENQYGISS  365 (633)
T ss_pred             cccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcH
Confidence            0   0     00       0       00112223466789999999887777776666666 58899999998888877


Q ss_pred             h---HHHHHHHH-HHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHH
Q 018113          284 G---FIFATFML-ASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS  326 (360)
Q Consensus       284 ~---~~~~~~~~-~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  326 (360)
                      .   .......+ +.+++.+++|+++||++.+..+.+........+.
T Consensus       366 ~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~  412 (633)
T TIGR00805       366 AEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS  412 (633)
T ss_pred             HHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence            4   33343343 5678999999999999876534455444444444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.88  E-value=3e-20  Score=170.84  Aligned_cols=262  Identities=13%  Similarity=0.097  Sum_probs=164.1

Q ss_pred             hhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHH
Q 018113           38 FKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI  113 (360)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~  113 (360)
                      .++..+....+.......+    ....|.+.+ .|+|+++.++..+...++..++.++.|+++||+|||+++..+.++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~  102 (438)
T TIGR00712        24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence            3444444444444444433    223666655 69999999999999999999999999999999999999999988888


Q ss_pred             HHH-HHHhc----chHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018113          114 LSC-ITKHS----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (360)
Q Consensus       114 ~~~-l~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  185 (360)
                      ++. +....    +++..+.+.|++.|++.+..++.... .+.|.   ++|+...+......    .    ++..+++.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~-~i~~~~~~~~rg~~~~~~~~~~----~----~g~~~~~~l  173 (438)
T TIGR00712       103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGR-TMVHWWSQSERGTIVSIWNCAH----N----IGGGIPPLL  173 (438)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHH-HHHHhcCcccchhHHHHHHHHH----H----hHhHHHHHH
Confidence            876 44443    46777888999999999888776645 66665   55666444333222    2    333444433


Q ss_pred             hhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCC----C-C--cc-------hhHHH--HHHHH-HHHHhcchh
Q 018113          186 GNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD----P-S--ES-------KDLLT--QFRGA-AVAIASDEK  248 (360)
Q Consensus       186 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~--~~-------~~~~~--~~~~~-~~~~~~~~~  248 (360)
                      .....+. ..+||..|++.+.+.++..+......+|++++    + +  +.       ++..+  +.++. .+.++|+++
T Consensus       174 ~~~~~~~-~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (438)
T TIGR00712       174 VLLGMAW-FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKL  252 (438)
T ss_pred             HHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCch
Confidence            3322221 12456677776555544333332223332110    0 0  00       00000  01111 124678888


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018113          249 IALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPR  311 (360)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~  311 (360)
                      ++.......+.....+. ...|.|.|+++..+.+.   +.......+.+++++++.+++.||++++
T Consensus       253 ~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       253 LWYIAIANVFVYLLRYG-VLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            88876655555544455 57789999987666554   4566677888999999999999999654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.88  E-value=3.2e-22  Score=174.06  Aligned_cols=259  Identities=17%  Similarity=0.126  Sum_probs=178.7

Q ss_pred             hHHHHHHHHHHHHHhhhh---hH-HHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHH
Q 018113           39 KNNYLLVYSLMMAGDWLQ---GP-YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL  114 (360)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~  114 (360)
                      .+..+.+.++...++..|   .+ ..+.+++.+|+++++.|++.+...+..++.+|+.|.++||++||+++..|..++.+
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~  110 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL  110 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence            344555666667777777   23 37888999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 018113          115 SC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV  190 (360)
Q Consensus       115 ~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~  190 (360)
                      +. ++++++.+|+++++|.+.|+|.+...|.+.+ +++|.   .+|++..    ..+..+...|+++|.+.+..++..  
T Consensus       111 Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s-~IaD~f~~~~Rs~~~----~ify~~ipvGsglG~vvgs~va~~--  183 (493)
T KOG1330|consen  111 AVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPS-LIADSFPDDKRSRVL----GIFYFAIPVGSGLGYVVGSVVASL--  183 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhhcccchh-HhhhcCcchhhhHHH----HHhhhhcccccceeEEeeeeeccC--
Confidence            87 8899999999999999999999999999966 99987   5666633    344445555555555555544443  


Q ss_pred             cccCCCCchhhhhhHHHHHHHHHHHhhhhccccC-CCCcchh------HHHHHHHHHHHHhcchhHHHHHHHHHHHHhhH
Q 018113          191 DSFSLGPVAPFDAAACFLAIGMVIILSSWTENYG-DPSESKD------LLTQFRGAAVAIASDEKIALLGAIQSLFEGSM  263 (360)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (360)
                        .+| ||+.|...+++.++..++.....+|+++ ..++.+.      ......++.+...|++.+....+.....++..
T Consensus       184 --~~~-Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~  260 (493)
T KOG1330|consen  184 --TFW-WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVI  260 (493)
T ss_pred             --ccc-eEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhc
Confidence              444 7788888888887777776555554432 1111111      11222334445556555554444444444333


Q ss_pred             HHHHHhhhccccC-----CCCCcchh-HHHHHHHHHHHHHHHHHHHHHhhc
Q 018113          264 YTFVFLWTPALSP-----NDEEIPHG-FIFATFMLASMLGSSLASRLMARS  308 (360)
Q Consensus       264 ~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~  308 (360)
                      .. +..|.|.+..     .+...+.+ ....+...++.+|.+.+|.++||+
T Consensus       261 Gs-~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~  310 (493)
T KOG1330|consen  261 GS-LSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL  310 (493)
T ss_pred             cc-cchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHH
Confidence            33 3445554332     11223333 455667788889999999999984

>TIGR00901 2A0125 AmpG-related permease

Probab=99.87  E-value=1.5e-19  Score=161.82  Aligned_cols=255  Identities=16%  Similarity=0.100  Sum_probs=154.9

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhh-----cchHHH-HHHHHHHHHHH-HHHhc---chHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKRAC-VTYCLTYILSC-ITKHS---PQYKI  126 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-----Grr~~l-~~~~~~~~~~~-l~~~~---~~~~~  126 (360)
                      .+.+|.+.+|+|+|.+++|...... +...+ ++++|+++||+     ||||.+ +.+.+..++.. ..++.   .+.+.
T Consensus         8 ~~~~~~~~~~~g~s~~~~g~~~~~~-~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~   85 (356)
T TIGR00901         8 GNTLPYWLRSKNVSLKTIGFFSLVG-LPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPL   85 (356)
T ss_pred             HhHHHHHHHHcCCCHHHHHHHHHHH-HHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence            4568899999999999999886553 32333 78999999998     898974 56666666654 55565   45556


Q ss_pred             HHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccC------CCC
Q 018113          127 LMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS------LGP  197 (360)
Q Consensus       127 l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~------~~~  197 (360)
                      +....++.+.+.+...+...+ ++.|.   ++|++..+.......        +|..+++.++..+.+..+      |.|
T Consensus        86 l~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~r~~~~~~~~~~~~--------~G~~~~~~l~~~l~~~~g~~~~~~~~w  156 (356)
T TIGR00901        86 LAGLAFLIAFFSATQDIALDA-WRLEILSDEELGYGSTIYIVGYR--------AGMLLSGSLALVLASPEFANTGLITLW  156 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHhCCHhhhchHHHHHHHHHH--------HHHHHHHHHHHHHhhhccccccccccc
Confidence            677777888877777676655 77775   666665444443333        333333333333333222      558


Q ss_pred             chhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchh---HHHHHHHHHHHHhhHHHHHHhhhccc
Q 018113          198 VAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEK---IALLGAIQSLFEGSMYTFVFLWTPAL  274 (360)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (360)
                      |..|.+.++..++..+......+|++++++++++..++.++..++++++|.   .+.......+.....+. ...+.|.|
T Consensus       157 r~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  235 (356)
T TIGR00901       157 GYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSA-ATVLTTLF  235 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            888887777666555444222344322211111222233445566777765   55554444444444444 56778888


Q ss_pred             cCCCCCcchh---HHHHHHH-HHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHH
Q 018113          275 SPNDEEIPHG---FIFATFM-LASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS  326 (360)
Q Consensus       275 ~~~~~~~~~~---~~~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  326 (360)
                      .++ .+.+..   ....... +..+++.++++++.||+|+|+  .+..+..+..+.
T Consensus       236 l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~--~l~~~~~~~~~~  288 (356)
T TIGR00901       236 LLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY--ALLLFGIVQALT  288 (356)
T ss_pred             HHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHH
Confidence            776 566553   3343333 567789999999999999885  333444443333

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.87  E-value=4.6e-20  Score=167.13  Aligned_cols=246  Identities=19%  Similarity=0.239  Sum_probs=147.4

Q ss_pred             HHHHHHHhhC--CChhhhHHHHH-----HHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHH-----
Q 018113           59 YVYYLYSTYG--FGKGEIGQLFI-----AGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYK-----  125 (360)
Q Consensus        59 ~~~~~~~~~g--~s~~~~g~~~~-----~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~-----  125 (360)
                      ..+.+.+++.  .++++.+...+     ..++...+++++.|+++||+|||+++..+.++..++. +++++++++     
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (394)
T TIGR00883        15 AAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIW   94 (394)
T ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHH
Confidence            3555566543  44556655433     3444445678899999999999999999999998877 778888765     


Q ss_pred             ---HHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc--ccCCCC
Q 018113          126 ---ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD--SFSLGP  197 (360)
Q Consensus       126 ---~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~--~~~~~~  197 (360)
                         .+++.|+++|++.+...+.... ++.|.   ++|++..+.....    ..+|..+++.++..+...+.+  ...++|
T Consensus        95 ~~~~~~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~----~~~G~~i~~~~~~~~~~~~~~~~~~~~~w  169 (394)
T TIGR00883        95 APILLLLARLIQGFSLGGEWGGAAL-YLAEYAPPGKRGFYGSFQQVG----APVGLLLAALTVLLLSYLLGDDALLEWGW  169 (394)
T ss_pred             HHHHHHHHHHHHHhhccccccccHH-HhhhcCCcccchHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCHHHhhccch
Confidence               4788999999999988887755 77776   5566544433333    333333333333332221111  124677


Q ss_pred             chhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchh--HHHHHHHHHHHHhhHHHHHHhhhcccc
Q 018113          198 VAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEK--IALLGAIQSLFEGSMYTFVFLWTPALS  275 (360)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (360)
                      |.++.+...+.++..... ...+|++++++++++ .++.+++.++.+++++  ++.......+... .+.....+.|.|.
T Consensus       170 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  246 (394)
T TIGR00883       170 RIPFLVSAVLVLIGLYLR-RNLEETPVFEKAQEK-HKKKRGPIRETLTKHRKPFLLGLGLVIATTT-TFYLITTYLPTYL  246 (394)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHhc-cccccCCHHHHHHhchHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            788877665554443332 333433221111000 1111122334455544  4443333333333 3333567888888


Q ss_pred             CCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          276 PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       276 ~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      +++.+.+.   +.......+...++.++.+++.||+|||+
T Consensus       247 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  286 (394)
T TIGR00883       247 TQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP  286 (394)
T ss_pred             HHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            66555544   45556677888999999999999999885

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.87  E-value=1.1e-19  Score=164.16  Aligned_cols=260  Identities=14%  Similarity=0.093  Sum_probs=164.4

Q ss_pred             HHHHHHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcch----HHHHHHHHHHHHHH-HHHhc
Q 018113           47 SLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK----RACVTYCLTYILSC-ITKHS  121 (360)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr----~~l~~~~~~~~~~~-l~~~~  121 (360)
                      +......+...|++|.+.+|+|.|.+++|.+.+...+...+.+++.|+++||+|||    +.+.+.....  .. ....+
T Consensus        14 ~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~   91 (382)
T PRK11128         14 FGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGA   91 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhc
Confidence            33344456678999999999999999999999999999999999999999999984    3332222111  22 33446


Q ss_pred             chHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchh
Q 018113          122 PQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAP  200 (360)
Q Consensus       122 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~  200 (360)
                      ++++.+++.|++.|++.+...+...+ +..+. ++|++..+..+...    .    +|..++|.+++.+.++.  +|+..
T Consensus        92 ~~~~~l~i~~~l~g~~~~~~~~~~~a-~~~~~~~~~~~a~~~~~~~~----~----lg~~igp~lgg~l~~~~--g~~~~  160 (382)
T PRK11128         92 HSFWLLFVAIGLFNLFFSPLVPLTDA-LANTWQKQIGLDYGKVRLWG----S----IAFVIGSALTGKLVSWF--GEQAI  160 (382)
T ss_pred             ccHHHHHHHHHHHHHHHcccccHHHH-HHHHHHhhccCCcchHHHHH----H----HHHHHHHHHHHHHHHHc--ChhHH
Confidence            88999999999999998888787644 55555 45555433333222    2    55566666666666554  45566


Q ss_pred             hhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCC
Q 018113          201 FDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE  280 (360)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (360)
                      |+..+...++..+.. ...||++++++++++ .++..++.++++|+|+++.......+....... ...+.|.|.++ .+
T Consensus       161 f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~-~g  236 (382)
T PRK11128        161 LWILTAGVASMLLGQ-LLRPTIMPQGESRQQ-ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAA-YYGFSAIYWQA-AG  236 (382)
T ss_pred             HHHHHHHHHHHHHHH-HccCCCCCccccccc-cccccchHHHHHcChhHHHHHHHHHHHHHHhHh-HHHHHHHHHHH-CC
Confidence            766554443333322 233433222111111 111123456889999998776655555444333 35566767654 34


Q ss_pred             cch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 018113          281 IPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSV  325 (360)
Q Consensus       281 ~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~  325 (360)
                      .+.   +.......+..++.....+++.||+++|+  .+..+.....+
T Consensus       237 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~--~l~~~~~~~~~  282 (382)
T PRK11128        237 YSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD--LLLLSAICGVV  282 (382)
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHH
Confidence            443   55666667788888899999999999884  34444443333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.86  E-value=9.7e-20  Score=169.33  Aligned_cols=255  Identities=15%  Similarity=0.152  Sum_probs=149.7

Q ss_pred             hHHHHHHHHhhCCC--------hhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHh---cchH
Q 018113           57 GPYVYYLYSTYGFG--------KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH---SPQY  124 (360)
Q Consensus        57 ~~~~~~~~~~~g~s--------~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~---~~~~  124 (360)
                      .+..|.+.++++.+        ..+.+++.+...++..+++++.|+++||+|||+++..+.++..++. ++.+   ..++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (481)
T TIGR00879        48 GGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSV  127 (481)
T ss_pred             hhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            34567777777776        8899999999999999999999999999999999999999988876 5533   3445


Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhcccCCCCc
Q 018113          125 KILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG---NLLVDSFSLGPV  198 (360)
Q Consensus       125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~---~~l~~~~~~~~~  198 (360)
                      +.+++.|++.|++.+...+.... +++|.   ++|++..+......    .    +|..+++.++   ....+.  .+||
T Consensus       128 ~~~~~~r~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~----~----~G~~~~~~~~~~~~~~~~~--~~w~  196 (481)
T TIGR00879       128 EMLIVGRVLLGIGVGIASALVPM-YLSEIAPKALRGALTSLYQLAI----T----FGILVAYGFGSGKVSLNNT--LGWR  196 (481)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHH-HHHccCChhhhhhhhhHHHHHH----H----HHHHHHHHHHHHhhcCCCC--ccHH
Confidence            68999999999999998887755 88886   55666444333222    2    4444444444   332233  3566


Q ss_pred             hhhhhhHHHHHHHHHHHhhhhccccC------CCCcchhHHHH-----------HH-----------------HHHHHHh
Q 018113          199 APFDAAACFLAIGMVIILSSWTENYG------DPSESKDLLTQ-----------FR-----------------GAAVAIA  244 (360)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----------~~-----------------~~~~~~~  244 (360)
                      ..|.+.....++..... ...||++.      +.++.++..++           .+                 +..++.+
T Consensus       197 ~~f~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (481)
T TIGR00879       197 IPLGLQLIPAGLLFLGL-FFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLF  275 (481)
T ss_pred             HHHHHHHHHHHHHHHHH-hcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence            66766544443333322 33343211      10000000000           00                 0001122


Q ss_pred             cc-----hhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHH
Q 018113          245 SD-----EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYM  316 (360)
Q Consensus       245 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~  316 (360)
                      +.     ++.........+...........+.|.+.++ .+.+.   +.......++.+++.++.++++||++||+  ..
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~  352 (481)
T TIGR00879       276 SSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRP--LL  352 (481)
T ss_pred             hcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HH
Confidence            21     2222222222222222222234555655543 23333   45566677888999999999999999985  33


Q ss_pred             HHHHHHHHHH
Q 018113          317 QIVFVVSSVS  326 (360)
Q Consensus       317 ~~~~~~~~~~  326 (360)
                      ..+.....++
T Consensus       353 ~~~~~~~~~~  362 (481)
T TIGR00879       353 LIGAAGMAIC  362 (481)
T ss_pred             HHHHHHHHHH
Confidence            3343333333

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.86  E-value=1e-19  Score=165.32  Aligned_cols=235  Identities=23%  Similarity=0.221  Sum_probs=174.0

Q ss_pred             HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHh--cchHHHHHHHHHHHHhHhhhh
Q 018113           65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH--SPQYKILMIGRILGGIATSLL  141 (360)
Q Consensus        65 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~--~~~~~~l~~~r~l~G~~~~~~  141 (360)
                      .++++|+.|.+++++..+.+..+...+.|+++||+|.|+++..+.++.+++. +...  ..+++.+++.|+++|++.|..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            4688999999999999999999999999999999999999999999999976 6544  345568899999999999999


Q ss_pred             hhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhh
Q 018113          142 FSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSS  218 (360)
Q Consensus       142 ~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (360)
                      +|+... +.+++   +||++..+....        |..+|.+++-.+++.+.+. .++|+.+|++.+.+.++..++....
T Consensus       146 ~pa~~~-i~~~W~P~~Ers~~~ail~~--------g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  146 FPAIGS-ILAKWAPPNERSTFIAILTA--------GSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             Hhhhhc-eeeeECCHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHHH
Confidence            998866 77776   677774444333        3345666666666666665 3567788888777666555544333


Q ss_pred             hccccCCCCc-chhHHHHH-------------HHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch-
Q 018113          219 WTENYGDPSE-SKDLLTQF-------------RGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH-  283 (360)
Q Consensus       219 ~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  283 (360)
                      ..|++.+.+. .+++.+.+             ..+++++++++++|...+...+.....+. +.+|.|.|+++..+.+. 
T Consensus       216 ~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~-l~~y~PtY~~~VL~f~v~  294 (466)
T KOG2532|consen  216 YSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYL-LLTYLPTYLKEVLGFDVR  294 (466)
T ss_pred             hcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhCCChh
Confidence            3322221110 11111111             12578999999999987666665555555 79999999998887765 


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 018113          284 --GFIFATFMLASMLGSSLASRLMARSPP  310 (360)
Q Consensus       284 --~~~~~~~~~~~~~~~~~~g~l~dr~g~  310 (360)
                        |...++..+...+..+++|.++||..+
T Consensus       295 ~~G~~salP~l~~~~~k~~~g~lsD~l~~  323 (466)
T KOG2532|consen  295 ETGFLSALPFLAMAIVKFVAGQLSDRLTF  323 (466)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              677788899999999999999999866

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.86  E-value=3.3e-19  Score=161.96  Aligned_cols=260  Identities=14%  Similarity=0.063  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHH-HHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-H
Q 018113           40 NNYLLVYSLMMAGDWLQGPYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I  117 (360)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l  117 (360)
                      |......++.....+...|++|.. .+++|.|+.+.|.+.+...+...+.+++.|+++||+|||+.++.+....+++. .
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~   84 (396)
T TIGR00882         5 WMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAP   84 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            444444455555555567886655 45789999999999999999999999999999999999999988776665533 1


Q ss_pred             ---HHhcc-----hHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018113          118 ---TKHSP-----QYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL  188 (360)
Q Consensus       118 ---~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  188 (360)
                         ..+.+     ......+.+++.|++.+...+.... +..|. ++++...+....    ...    +|..+++.+++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~----~~~----~g~~~g~~~~g~  155 (396)
T TIGR00882        85 FFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEA-YIEKVSRNSNFEYGKARM----FGC----VGWALCASIAGI  155 (396)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHH-HHHHhhhhcccccchhhh----hcc----cHHHHHHHHHhh
Confidence               12222     2234566788888888877777644 55554 323221111111    222    444555555554


Q ss_pred             hhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcch----hHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHH
Q 018113          189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESK----DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMY  264 (360)
Q Consensus       189 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (360)
                      +.+   ++|+.+|++.+.+.++..+......+|+++++++++    +..++..++.++++|||+++.......+......
T Consensus       156 l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~  232 (396)
T TIGR00882       156 LFS---IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYD  232 (396)
T ss_pred             hhc---cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            433   356678877766655544444222232211110000    0001111245678899988766554444332222


Q ss_pred             HHHHhhhccccCCCC---Ccc---hhHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          265 TFVFLWTPALSPNDE---EIP---HGFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       265 ~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      . ...+.|.|.++..   +.+   .+...+...+...++....+++.||+|+|+
T Consensus       233 ~-~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~  285 (396)
T TIGR00882       233 V-FDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN  285 (396)
T ss_pred             H-HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            2 3334555543322   222   255666667778888899999999999985

>TIGR00898 2A0119 cation transport protein

Probab=99.85  E-value=9.1e-20  Score=170.90  Aligned_cols=256  Identities=14%  Similarity=0.082  Sum_probs=163.7

Q ss_pred             HHHHHHHHhhCCC---hhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHH
Q 018113           58 PYVYYLYSTYGFG---KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL  133 (360)
Q Consensus        58 ~~~~~~~~~~g~s---~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l  133 (360)
                      +..|.+.+|+|++   +.+.++..+...++..+++++.|+++||+|||++++.+.++.+++. +.+++++++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            4577888999999   8899999999999999999999999999999999999999988877 77899999999999999


Q ss_pred             HHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHH
Q 018113          134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI  210 (360)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  210 (360)
                      .|++.+...+.... ++.|.   ++|++..+..        ..+..+|.++++.++..+.     +||..+++.++..++
T Consensus       190 ~G~~~~~~~~~~~~-~~~e~~~~~~r~~~~~~~--------~~~~~~g~~~~~~~~~~~~-----~wr~~~~~~~i~~~~  255 (505)
T TIGR00898       190 VGMGIGGIWVQAVV-LNTEFLPKKQRAIVGTLI--------QVFFSLGLVLLPLVAYFIP-----DWRWLQLAVSLPTFL  255 (505)
T ss_pred             HHhhccchHHHHHH-HhheecChhhhHHHHHHH--------HHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHH
Confidence            99999998888755 88887   4455532222        2233355555555554432     255666666555544


Q ss_pred             HHHHHhhhhccccC------CCCcchhHH---------------------HH---H--HHHHHHHhcchhHHHHHHHHHH
Q 018113          211 GMVIILSSWTENYG------DPSESKDLL---------------------TQ---F--RGAAVAIASDEKIALLGAIQSL  258 (360)
Q Consensus       211 ~~~~~~~~~~~~~~------~~~~~~~~~---------------------~~---~--~~~~~~~~~~~~~~~~~~~~~~  258 (360)
                      ..+.. ...||+++      +.+++++..                     ++   .  +...++++++|+++...+...+
T Consensus       256 ~~~~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  334 (505)
T TIGR00898       256 FFLLS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMM  334 (505)
T ss_pred             HHHHH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHH
Confidence            44333 33444321      111110000                     00   0  0134567778777665554443


Q ss_pred             HHhhHHHHHHhhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhHh
Q 018113          259 FEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIV  332 (360)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  332 (360)
                      .......  ..+...+..+..+.+.........+..+++.++.+++.||+|||+  .+.....+.++++.....
T Consensus       335 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~--~~~~~~~~~~~~~l~~~~  404 (505)
T TIGR00898       335 LWFTTAF--SYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRY--TMAASLLLAGVALLLLLF  404 (505)
T ss_pred             HHHHHHH--HHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHH
Confidence            3322211  122222222233344445555667788899999999999999984  444444444444444333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.85  E-value=1.4e-18  Score=158.04  Aligned_cols=248  Identities=16%  Similarity=0.100  Sum_probs=155.9

Q ss_pred             HHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhh-----cchH-HHHHHHHHHHHHH-HHHhc--
Q 018113           51 AGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKR-ACVTYCLTYILSC-ITKHS--  121 (360)
Q Consensus        51 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-----Grr~-~l~~~~~~~~~~~-l~~~~--  121 (360)
                      ...++..+.+|.+.++.|+|.+++|.+......  .+..+++|+++||+     |||| .+..+.+..+++. ..++.  
T Consensus        13 ~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~   90 (402)
T PRK11902         13 LPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPP   90 (402)
T ss_pred             hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCc
Confidence            334444667899999999999999998666664  58889999999999     8876 6777777777765 55554  


Q ss_pred             -chHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCC
Q 018113          122 -PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGP  197 (360)
Q Consensus       122 -~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~  197 (360)
                       ++++.+.+..++.+...+...+...+ ++.|.   ++|++..+....        |+.+|.++++.++..+.+.. ++|
T Consensus        91 ~~~~~~l~~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~r~~~~~~~~~--------g~~~g~i~g~~l~~~l~~~~-~gw  160 (402)
T PRK11902         91 HAALWPLAGLAVLVAFLSASQDIVFDA-YSTDVLHPEERGAGAAVKVL--------GYRLAMLVSGGLALWLADRV-LGW  160 (402)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcChhhhhHHHHHHHH--------HHHHHHHHHhHHHHHHHhcc-cCH
Confidence             35677777777888877777777655 77776   446664444443        33344444444444444421 467


Q ss_pred             chhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCC
Q 018113          198 VAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN  277 (360)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (360)
                      |..|++.+++.++..+.. ...||++.+++++++..++..++.++++|||.++.......+....... ...+.+.+..+
T Consensus       161 ~~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~~l~~  238 (402)
T PRK11902        161 GNTYLLMAGLMLAGALTT-LWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAF-AGSLSTTFLIR  238 (402)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHH-HHHHHHHHHHH
Confidence            778877666555444433 3445443322222222223445667889999887765554444433222 12233334444


Q ss_pred             CCCcchh---HHHHHH-HHHHHHHHHHHHHHHhhcCCCh
Q 018113          278 DEEIPHG---FIFATF-MLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       278 ~~~~~~~---~~~~~~-~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      +.+.++.   ...... .++.+++.++.+++.||+++|+
T Consensus       239 ~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~  277 (402)
T PRK11902        239 GAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR  277 (402)
T ss_pred             hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            4565553   333333 3457889999999999999885

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.85  E-value=1.6e-18  Score=148.97  Aligned_cols=265  Identities=19%  Similarity=0.208  Sum_probs=188.8

Q ss_pred             hhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HH---HhcchHHHHHH
Q 018113           54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKILMI  129 (360)
Q Consensus        54 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~---~~~~~~~~l~~  129 (360)
                      ....+.+|.+.+.++++..|.+.+..+.+.+..+.+++.|.+.||+|+|+.++.+..++++++ +.   +...++..+++
T Consensus        30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~  109 (422)
T COG0738          30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLV  109 (422)
T ss_pred             hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            333678999999999999999999999999999999999999999999999999999999987 44   34678899999


Q ss_pred             HHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----------cCC
Q 018113          130 GRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS-----------FSL  195 (360)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~-----------~~~  195 (360)
                      +-++.|.|.+...+++++ +++..   ++..++.+..+..++        +|.+++|++++.++.+           ..|
T Consensus       110 ~lFila~Gi~~LetaaNp-~v~~lg~~~~a~~rlnl~q~fn~--------lGa~~gp~~g~~lils~~~~~~~~~~~~~~  180 (422)
T COG0738         110 ALFILASGIGLLETAANP-YVTLLGKPESAAFRLNLAQAFNG--------LGAILGPLLGSSLILSGVALTMSAAQILAI  180 (422)
T ss_pred             HHHHHHhhhHHHHhccch-HHHHhCCchhHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHhhhhhccCHHHHHHH
Confidence            999999999999999988 87765   334455555555555        5555556555555441           001


Q ss_pred             ------CCchhhhhhHHHHHHHHHHHh-hhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHH
Q 018113          196 ------GPVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVF  268 (360)
Q Consensus       196 ------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (360)
                            .++.+|...+...++..+... .+.|+.++.+++..+..+   ....+++|+|+.+...+..++..+.... ..
T Consensus       181 ~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~---~~~~~l~~~~~~~~gvl~~FlYVG~Eva-~g  256 (422)
T COG0738         181 KGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGS---AGLSSLFQNKHLRLGVLAIFLYVGAEVA-IG  256 (422)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccccc---chHHHHHhChHHHHHHHHHHHHHhHHHH-HH
Confidence                  245667666555444444332 344444332222111111   1445789999999988888887777666 68


Q ss_pred             hhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhHhc
Q 018113          269 LWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVT  333 (360)
Q Consensus       269 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  333 (360)
                      .|++.|+.+..+.+.   +...+.+..+.++|++++.++.+|++..  +++.....+....+....+.
T Consensus       257 sfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~--k~Laf~a~~~ill~~~~~l~  322 (422)
T COG0738         257 SFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE--KYLAFYALIAILLLLAVALI  322 (422)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHh
Confidence            899999887656554   3566777889999999999999999776  44555544444444444443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.85  E-value=1.9e-18  Score=160.61  Aligned_cols=246  Identities=16%  Similarity=0.121  Sum_probs=154.2

Q ss_pred             hhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhh-----cchHH-HHHHHHHHHHHH-HHHhc---c
Q 018113           53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKRA-CVTYCLTYILSC-ITKHS---P  122 (360)
Q Consensus        53 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-----Grr~~-l~~~~~~~~~~~-l~~~~---~  122 (360)
                      .....+.+|...++.|.|.+++|........  .+..+++|+++||+     ||||. +..+.+..+++. .+++.   +
T Consensus        28 ~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~  105 (491)
T PRK11010         28 LALTSGTLQAWMTVENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGT  105 (491)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            3444677889999999999999986333332  35778899999999     99986 556666666665 55554   4


Q ss_pred             hHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCch
Q 018113          123 QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVA  199 (360)
Q Consensus       123 ~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~  199 (360)
                      +++.+.+.+++.|++.+...+...+ +..|.   ++|++..+...        .|..+|..+++.+...+.+. .++||.
T Consensus       106 ~l~~l~~~~~l~~~~~a~~~i~~~a-~~~~~~~~~~rg~~~~i~~--------~g~~lG~llg~~l~~~l~~~-~~GWr~  175 (491)
T PRK11010        106 QLRWLAALAVVIAFCSASQDIVFDA-WKTDVLPAEERGAGAAISV--------LGYRLAMLVSGGLALWLADR-YLGWQG  175 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcChhhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHhc-ccCHHH
Confidence            6788888999999988877777645 77776   55665433333        23334555555555555542 246778


Q ss_pred             hhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCC
Q 018113          200 PFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE  279 (360)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (360)
                      .|++.+.+.++..+.. ...||++++++++++..++..++.++.+++++.+.......+....... ...+.+.|+.++.
T Consensus       176 ~f~i~a~l~ll~~l~~-~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~-~~~~~~~~l~~~~  253 (491)
T PRK11010        176 MYWLMAALLIPCIIAT-LLAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAF-AMSLTTTFLIRGV  253 (491)
T ss_pred             HHHHHHHHHHHHHHHH-HhcCCCccccccccchhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence            8888776665554443 2345443221111111112223455677777766554444443333333 3556676765555


Q ss_pred             Ccchh---HHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          280 EIPHG---FIF-ATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       280 ~~~~~---~~~-~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      |.+..   ... ....++.+++.++.|+++||+++|+
T Consensus       254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~  290 (491)
T PRK11010        254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR  290 (491)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            66553   333 2335688899999999999999874

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.83  E-value=1.5e-18  Score=158.92  Aligned_cols=261  Identities=15%  Similarity=0.083  Sum_probs=139.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHH-HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-
Q 018113           39 KNNYLLVYSLMMAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-  116 (360)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-  116 (360)
                      .|......++.....+...|++|... +++|+|+.++|.+.+...+...+.+++.|+++||+|||++++.+....++.. 
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~   91 (420)
T PRK09528         12 YWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFG   91 (420)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            34444444444444455567755554 4599999999999999999999999999999999999999988766555432 


Q ss_pred             -HHH--hcch-----HHHHHHHHHHHHhHhhhhhhhhhhHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018113          117 -ITK--HSPQ-----YKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN  187 (360)
Q Consensus       117 -l~~--~~~~-----~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  187 (360)
                       ...  .++.     .....++++..|.+.....+.... +..+. +++++..+....    ...    +|..+++.+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~----~~~----~g~~i~~~~~g  162 (420)
T PRK09528         92 PFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEA-YIERVSRRSGFEYGRARM----WGS----LGWALCAFIAG  162 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhh-HHHHHHhhccccchhhHH----hhh----HHHHHHHHHHH
Confidence             111  1111     111222333334333333233322 32222 333332222222    222    44455555555


Q ss_pred             hhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCC---Ccch-hHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhH
Q 018113          188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP---SESK-DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSM  263 (360)
Q Consensus       188 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (360)
                      .+.+   .+|+.+|+..+.+.++.........+|+++++   ++++ +..+...++..+.+|||+++.......+.... 
T Consensus       163 ~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~-  238 (420)
T PRK09528        163 ILFN---INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACF-  238 (420)
T ss_pred             HHHh---cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHH-
Confidence            5544   24556676666555444444422222222111   0000 00111112344677888876654433333222 


Q ss_pred             HHHHHhhhccccCCCC---Ccc---hhHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          264 YTFVFLWTPALSPNDE---EIP---HGFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       264 ~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      +.....+.|.|..+..   +.+   .+...+...+...++.+..|++.||+|+|+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~  293 (420)
T PRK09528        239 YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN  293 (420)
T ss_pred             HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence            2212334554443211   222   256667777888899999999999999985

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.83  E-value=3.2e-18  Score=152.55  Aligned_cols=239  Identities=24%  Similarity=0.296  Sum_probs=168.0

Q ss_pred             hhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHH
Q 018113           53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGR  131 (360)
Q Consensus        53 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r  131 (360)
                      .....+..|.+.+++|.++.+.+...+...+...+.+++.|+++||+|||+.+..+.....++. ...+.++++.+.+.|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (352)
T cd06174          15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGR   94 (352)
T ss_pred             hhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            3334677889999999999999999999999999999999999999999999999999998877 677789999999999


Q ss_pred             HHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHH
Q 018113          132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL  208 (360)
Q Consensus       132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  208 (360)
                      ++.|++.+...+...+ ++.|.   ++|++..+.....        ..+|..+++.+++.+.+..+  |+..+.......
T Consensus        95 ~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  163 (352)
T cd06174          95 FLLGLGGGALYPAAAA-LIAEWFPPKERGRALGLFSAG--------FGLGALLGPLLGGLLAESLG--WRWLFLILAILG  163 (352)
T ss_pred             HHHHcccccccHhHHH-HHHHhCCccchhhhhhHHHHH--------HHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHH
Confidence            9999999988887755 77776   4566644433322        22455555555555555544  556666665555


Q ss_pred             HHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hH
Q 018113          209 AIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GF  285 (360)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  285 (360)
                      ++..... ...+                          |+++.......+....... ...+.|.+.++..+.+.   +.
T Consensus       164 ~~~~~~~-~~~~--------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  215 (352)
T cd06174         164 LLLALLL-LFLL--------------------------RLLLLLALAFFLLSFGYYG-LLTYLPLYLQEVLGLSAAEAGL  215 (352)
T ss_pred             HHHHHHH-HHHH--------------------------HHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCHHHHHH
Confidence            5444443 2222                          3344444444444444333 56777877766544443   56


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhH
Q 018113          286 IFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPI  331 (360)
Q Consensus       286 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  331 (360)
                      ......++..++.++.+++.||+++|+ +.+..+.....+......
T Consensus       216 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~  260 (352)
T cd06174         216 LLSLFGLGGILGALLGGLLSDRLGRRR-LLLLIGLLLAALGLLLLA  260 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHH
Confidence            677788899999999999999999883 155555555444444433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.83  E-value=5.3e-18  Score=156.12  Aligned_cols=264  Identities=15%  Similarity=0.169  Sum_probs=160.1

Q ss_pred             hHH-HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhh----hcchH-HHHHHHHHHHHHH-HHHhcch------
Q 018113           57 GPY-VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKR-ACVTYCLTYILSC-ITKHSPQ------  123 (360)
Q Consensus        57 ~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr----~Grr~-~l~~~~~~~~~~~-l~~~~~~------  123 (360)
                      .++ .+.+.+++|+|+.++|.+.+...+...+..|+.|+++||    +|||| .++.+....+++. ++...++      
T Consensus        19 ~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~   98 (437)
T TIGR00792        19 STYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGK   98 (437)
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchH
Confidence            455 556667899999999999999999999999999999997    68755 5667777777665 5555443      


Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhHHhhhc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-ccCCCCc
Q 018113          124 YKILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD-SFSLGPV  198 (360)
Q Consensus       124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~-~~~~~~~  198 (360)
                      ...+++.+++.+++.+.......+ +..|.    ++|++..+......    .+|..+++.+.+.+...+.+ ...++|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~~R~~~~~~~~~~~----~~g~~l~~~~~~~l~~~~~~~~~~~g~~  173 (437)
T TIGR00792        99 LVYAYITYILLGLFYSFVNIPYWS-LVPAITLDPRERESLSTFRRFGA----TLGGLLVAVIVLPLVSYFGGGDDKFGWF  173 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHhh-CcccccCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence            345667788888887766554433 44442    56666444433333    33333333333222222111 1134677


Q ss_pred             hhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCC
Q 018113          199 APFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND  278 (360)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (360)
                      ..+.+.+++..+..+......+|++++++++++...+.++..+++++||+++.......+.....+. ...+.+.|.+..
T Consensus       174 ~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  252 (437)
T TIGR00792       174 MFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNI-KNGVQVYYFTYV  252 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HcchhheeEeee
Confidence            7777777666655555444555543221111111122345566788999988776655554444433 344455555544


Q ss_pred             CCcch--hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 018113          279 EEIPH--GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLL  328 (360)
Q Consensus       279 ~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  328 (360)
                      .+.+.  +.......++.+++.++.++++||+|+|+  ....+..+..+...
T Consensus       253 ~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~--~~~~~~~~~~~~~~  302 (437)
T TIGR00792       253 LGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI--LFAGGILLMVLGYL  302 (437)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHH
Confidence            44222  44556667889999999999999999884  44444444444333

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.82  E-value=3.3e-17  Score=145.64  Aligned_cols=237  Identities=13%  Similarity=0.098  Sum_probs=148.0

Q ss_pred             HH-HHHHHHhhCCChhh-hHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHH
Q 018113           58 PY-VYYLYSTYGFGKGE-IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG  134 (360)
Q Consensus        58 ~~-~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~  134 (360)
                      |+ .|++.+|+|+|++| .|.+.+..+.+..+..++.|.++||+|.|+++..+.+.+++.. +.++++++..+.+.|++.
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ll  125 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFY  125 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44 88999999999999 8999999999999999999999999999999999999999977 888999999999999999


Q ss_pred             HhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchh-hhhhHHHHHH
Q 018113          135 GIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAP-FDAAACFLAI  210 (360)
Q Consensus       135 G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~  210 (360)
                      |++.|... +... ++..+   ++|++..+...+.        ..+|..++++++++ +...+|++... ..+......+
T Consensus       126 GvaEA~~~-A~~s-yI~~WfP~kER~ratsi~~sg--------~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~  194 (511)
T TIGR00806       126 SVTMAARI-AYSS-YIFSLVPPSRYQRAAAYSRAA--------VLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTF  194 (511)
T ss_pred             HHHHHHHH-HHHH-HHHHHCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHH
Confidence            99999998 5545 77766   6677744443333        33444555555555 23345655222 2333322222


Q ss_pred             HHHHHhhhhccccC------C------------C--Cc----chh--------HHHHHHHHHHHHhcchhHHHHHHHHHH
Q 018113          211 GMVIILSSWTENYG------D------------P--SE----SKD--------LLTQFRGAAVAIASDEKIALLGAIQSL  258 (360)
Q Consensus       211 ~~~~~~~~~~~~~~------~------------~--~~----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (360)
                      +.++. ..+|..++      +            .  ++    ..+        ..+......++..+|++++...+-..+
T Consensus       195 a~~~a-~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~  273 (511)
T TIGR00806       195 SVFLA-LFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVF  273 (511)
T ss_pred             HHHHH-HhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHH
Confidence            22222 22221100      0            0  00    000        011222344456677776665555444


Q ss_pred             HHhhHHHHHHhhhccccCCC----CCcchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 018113          259 FEGSMYTFVFLWTPALSPND----EEIPHGFIFATFMLASMLGSSLASRLMARS  308 (360)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  308 (360)
                      ...+.+. +.+|....-++.    .+. .|.+-++..+.+.+.++..|++-.+.
T Consensus       274 a~~g~~q-v~~Y~Q~LW~~v~~~~~~y-NG~veA~~tllga~~a~~ag~~~~~w  325 (511)
T TIGR00806       274 NSAGYYL-ITYYVHTLWGTLDESLNKY-NGAVDAASTLLGAITSFIAGFVNIRW  325 (511)
T ss_pred             HhhHHHH-HHHHHHHHHHHcCCCcccc-CCHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            4444333 333333222111    112 25555666777778888889885544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.81  E-value=1.8e-18  Score=157.60  Aligned_cols=243  Identities=14%  Similarity=0.084  Sum_probs=175.8

Q ss_pred             HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHhHh
Q 018113           60 VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SCITKHSPQYKILMIGRILGGIAT  138 (360)
Q Consensus        60 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~-~~l~~~~~~~~~l~~~r~l~G~~~  138 (360)
                      +..+.+|.+....+.+.+.++.+++..++.++.|.+.||++..+.+....+.+++ +.+....+|++.+++.|++.|+.+
T Consensus        69 l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~e  148 (495)
T KOG2533|consen   69 LSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFE  148 (495)
T ss_pred             HcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            3345588899999999999999999999999999999999988888888888877 446667899999999999999999


Q ss_pred             hhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHH
Q 018113          139 SLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII  215 (360)
Q Consensus       139 ~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (360)
                      +..+|.... +++.+   ++|+.+.++..+..+    +|+.+|++++.-+-..-....-.+||+.|++.+.+.++..++.
T Consensus       149 s~~wP~~~~-~lg~wy~~~e~g~r~~~~~a~~~----~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~  223 (495)
T KOG2533|consen  149 SGGWPGVVA-ILGNWYGKSERGLRMGIWYASAS----LGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVV  223 (495)
T ss_pred             cccchHHHH-HHHhhcChhhhhhhHHHHHHhcc----hhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheE
Confidence            999999966 77776   667775555444433    3443444444332110000112456677888888777777776


Q ss_pred             hhhhccccCCC---Ccchh-----HH---------H-HHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCC
Q 018113          216 LSSWTENYGDP---SESKD-----LL---------T-QFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN  277 (360)
Q Consensus       216 ~~~~~~~~~~~---~~~~~-----~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (360)
                      +..+|+++.+.   ++.++     ..         + ......++.+++|++|..+++..+.....+. ..+|+|.|.++
T Consensus       224 f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~-~~~~lpl~l~~  302 (495)
T KOG2533|consen  224 FFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYG-FSYWLPLYLKS  302 (495)
T ss_pred             EEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhcccc-HHHHHHHHHHc
Confidence            65555544311   11110     00         0 1123466889999999999998888887777 58999999988


Q ss_pred             CCCcch---hHHHHHHHHHHHHHHHHHHHHHhhc
Q 018113          278 DEEIPH---GFIFATFMLASMLGSSLASRLMARS  308 (360)
Q Consensus       278 ~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~  308 (360)
                      ..+.+.   +.+.....++++++.+++|.++||.
T Consensus       303 ~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  303 NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             CCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence            544544   4566778899999999999999995

>TIGR00889 2A0110 nucleoside transporter

Probab=99.81  E-value=1.7e-17  Score=151.36  Aligned_cols=262  Identities=11%  Similarity=-0.006  Sum_probs=157.3

Q ss_pred             HHHHHHhhhhhHH-HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcc-hHHHHHHHHHHHHHH-HHHhcch
Q 018113           47 SLMMAGDWLQGPY-VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR-KRACVTYCLTYILSC-ITKHSPQ  123 (360)
Q Consensus        47 ~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~~-l~~~~~~  123 (360)
                      ++.....+...|+ .+.+.+++|+|.+|+|++.+...++..+++++.|.++||+|| |+++.++.+..+++. +..+.++
T Consensus        12 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~   91 (418)
T TIGR00889        12 FLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTT   91 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3334444445444 666778899999999999999999999999999999999965 778887777776665 6678889


Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhHH---hh----h---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 018113          124 YKILMIGRILGGIATSLLFSAFESWL---VA----E---HNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF  193 (360)
Q Consensus       124 ~~~l~~~r~l~G~~~~~~~~~~~~~~---i~----~---~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~  193 (360)
                      ++.+.+.|++.|++.+...+...+..   ..    |   ..+|.+.      .-    .+|..+|+.++    +.+..  
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~------~G----~lG~~ig~~l~----g~l~~--  155 (418)
T TIGR00889        92 PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRV------MG----TIGFIAAMWAV----SLLDI--  155 (418)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeee------eh----hHHHHHHHHHH----HHhcc--
Confidence            99999999999998776666554421   11    1   1122221      10    13444444444    43311  


Q ss_pred             CCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcc-hhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhc
Q 018113          194 SLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSES-KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP  272 (360)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (360)
                      ...|+ ++++.+.+.++..+.. ...||++++++++ ++..++...+.++++|+|+++.......+....... ...+.|
T Consensus       156 ~~~~~-~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~~~~~  232 (418)
T TIGR00889       156 ELSNI-QLYITAGSSALLGVFA-LTLPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQI-TNIFGN  232 (418)
T ss_pred             cchhH-HHHHHHHHHHHHHHHH-hcCCCCCCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHH-HHHhHH
Confidence            12232 4545444444444333 3455543222211 111111112344678899887765555554333322 345556


Q ss_pred             cccCCCC-C--------cc-hhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHH
Q 018113          273 ALSPNDE-E--------IP-HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLL  329 (360)
Q Consensus       273 ~~~~~~~-~--------~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~  329 (360)
                      .+.++.. +        .+ .+...+...+..+++.+..+++.||+|+|+  .+..+.....+....
T Consensus       233 ~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~--~l~~~~~~~~v~~~l  297 (418)
T TIGR00889       233 GFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK--VMLLSLVAWALRFGF  297 (418)
T ss_pred             HHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHH
Confidence            5554421 1        11 256667778889999999999999999984  455555444444333

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.80  E-value=1.8e-17  Score=169.75  Aligned_cols=257  Identities=16%  Similarity=0.085  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHHhhhhh-H---H-HHHHHHhhCCCh-hhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHH---HH
Q 018113           42 YLLVYSLMMAGDWLQG-P---Y-VYYLYSTYGFGK-GEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL---TY  112 (360)
Q Consensus        42 ~~~~~~~~~~~~~~~~-~---~-~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~---~~  112 (360)
                      ++...++..+.+++.. .   . .+.+.++.+.+. ...++..+...+...+.+++.|.++||+|||+++.....   ..
T Consensus        16 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~   95 (1140)
T PRK06814         16 LFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGI   95 (1140)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHH
Confidence            3344455556555542 1   1 122323333333 345677778888888999999999999999997643222   22


Q ss_pred             HHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018113          113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL  188 (360)
Q Consensus       113 ~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  188 (360)
                      .... .....++++.++++|+++|++.+...|...+ ++.+.   ++|++..++.....+        +|.++++.++++
T Consensus        96 ~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a-~l~~~~~~~~~~~a~~~~~~~~~--------ig~~igp~l~g~  166 (1140)
T PRK06814         96 AALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS-ILPDHLNKDELLGANALVEAGTF--------IAILLGTIIGGL  166 (1140)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH-hhHhhcCccccchhhHHHHHHHH--------HHHHHHHHHHHH
Confidence            2222 3334589999999999999999999888866 77775   556665544443333        455555555555


Q ss_pred             hhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCc---chhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHH
Q 018113          189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSE---SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYT  265 (360)
Q Consensus       189 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (360)
                      +.+..+|  +..|.......++..+ .....++.++++++   ..+..++.....+.+.+++.++...+...+.......
T Consensus       167 l~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (1140)
T PRK06814        167 ATISGNF--VILVALLMGIAVLGWL-ASLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAV  243 (1140)
T ss_pred             HHhcccc--HHHHHHHHHHHHHHHH-HHhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence            5555444  4455333333333222 22344443322111   1112233445677888999888877666665555444


Q ss_pred             HHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018113          266 FVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPR  311 (360)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~  311 (360)
                       ...+.|.|.++..+.+.   +...+...++.++|.+..+++.||..++
T Consensus       244 -~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~  291 (1140)
T PRK06814        244 -VLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL  291 (1140)
T ss_pred             -HHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence             46788999887766654   5677788899999999999999887655

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.80  E-value=3.6e-17  Score=167.88  Aligned_cols=245  Identities=14%  Similarity=0.006  Sum_probs=152.8

Q ss_pred             hHHHHHHHHhhCCChhh--hHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH----HHHhcchHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGE--IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHSPQYKILMIG  130 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~--~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~----l~~~~~~~~~l~~~  130 (360)
                      ....+.+.++++.+.+.  .+++.++..++..++++++|+++||+|||++++.+.++..+..    ++...++++.+++.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  109 (1146)
T PRK08633         30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAV  109 (1146)
T ss_pred             HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            34466666777765443  5788888888888999999999999999999998887655533    33456789999999


Q ss_pred             HHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc--------cCCCCch
Q 018113          131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS--------FSLGPVA  199 (360)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~--------~~~~~~~  199 (360)
                      |+++|++.+...+...+ ++.|.   ++|++..+......+    +|.    ++++.+++.+.+.        .+|.+..
T Consensus       110 r~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~----ig~----~lg~~l~~~l~~~~~~~~~~~~~~~~~~  180 (1146)
T PRK08633        110 TFLLGAQSAIYSPAKYG-IIPELVGKENLSRANGLLEAFTI----VAI----LAGTALFSFLFESVNGNTPSEILGRIAP  180 (1146)
T ss_pred             HHHHHHHHHhhchHHHh-hhHHhcCcccchhhhhHHHHHHH----HHH----HHHHHHHHHHHHhhccccccccccchHH
Confidence            99999999998888755 77876   667775555444433    333    3333333333332        1122111


Q ss_pred             hhhhhHHHHHHHHHHHhhhhccccCCCCc-----chhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccc
Q 018113          200 PFDAAACFLAIGMVIILSSWTENYGDPSE-----SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL  274 (360)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (360)
                      .+.......++..+.. ...|+.++..++     .....+......+.+++++.++...+...+....... ...+.|.|
T Consensus       181 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  258 (1146)
T PRK08633        181 AGLVLLAVAVLGLIFA-YRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQL-AQANFPAY  258 (1146)
T ss_pred             HHHHHHHHHHHHHHHH-hcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-HHHhhHHH
Confidence            2222222222222222 333443221111     1112233344566778888877765555554444433 46677877


Q ss_pred             cCCCCCcch----hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          275 SPNDEEIPH----GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       275 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      ..+..+.+.    +.+.+...++.+++.++.+++.||.++++
T Consensus       259 ~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~  300 (1146)
T PRK08633        259 AKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG  300 (1146)
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc
Confidence            766555443    45667778888999999999999998774

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.79  E-value=1.1e-16  Score=148.16  Aligned_cols=139  Identities=17%  Similarity=0.150  Sum_probs=98.5

Q ss_pred             HHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhh-hcchHHHHHHHHHHHHHH-HHHhcchHHH-HHHHHHHHH
Q 018113           59 YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQYKI-LMIGRILGG  135 (360)
Q Consensus        59 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~-l~~~~~~~~~-l~~~r~l~G  135 (360)
                      ...++.+++|.+.++.+++.+.......+..+++|+++|| +||||+++.+.++++++. +++++++... +.++|.++|
T Consensus        37 l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~  116 (489)
T PRK10207         37 LAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIA  116 (489)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            3666778899999999998888887788888899999999 999999999999999987 7777765444 558999999


Q ss_pred             hHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhH
Q 018113          136 IATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAA  205 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~  205 (360)
                      +|.|...+...+ ++.|.  +++.+..+ ....+..+.++|.    .++|.+++++.++.|  |++.|++..
T Consensus       117 ig~g~~~~~~~~-li~~~~p~~~~~~~~-~~~~~~~~~nig~----~~g~~l~g~l~~~~g--w~~~F~i~~  180 (489)
T PRK10207        117 VGNGLFKANPAS-LLSKCYPPKDPRLDG-AFTLFYMSINIGS----LISLSLAPVIADKFG--YSVTYNLCG  180 (489)
T ss_pred             hccccccCCHHH-HHHHhcCCCchhhhc-chhHHHHHHHHHH----HHHHHHHHHHHHhhC--hHHHHHHHH
Confidence            999999888755 77775  21111111 2223444444444    444444455555445  556676653

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.79  E-value=1.9e-16  Score=146.53  Aligned_cols=276  Identities=18%  Similarity=0.223  Sum_probs=178.5

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH--HH
Q 018113           41 NYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--IT  118 (360)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~--l~  118 (360)
                      .+.....+..+.+++....++.+..+..-|+..++.+.....+...+.++++|.++||++|||+++.+.++.++..  +.
T Consensus        14 ~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~   93 (524)
T PF05977_consen   14 RLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLA   93 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Confidence            3445666778888888666667777778889999999999999999999999999999999999999988776533  22


Q ss_pred             --Hh--cchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 018113          119 --KH--SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS  194 (360)
Q Consensus       119 --~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~  194 (360)
                        ..  ..+.+.+++.-++.|++.+...|+..+ ++.|.-+|....+ ..+..+...++...+|+.+++.    +....|
T Consensus        94 ~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A-~ip~lV~~~~L~~-A~al~s~~~niar~iGPalgG~----Lva~~G  167 (524)
T PF05977_consen   94 VLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQA-IIPELVPKEDLPA-ANALNSISFNIARIIGPALGGI----LVAFFG  167 (524)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccHhhHHH-HHHHHHHHHHHHHhccchHHHH----HHHHHH
Confidence              22  247788899999999999999888866 8887632322221 2223343444444444444443    333222


Q ss_pred             CCCchhhhhhHHHHHHHHHHHhhhhcccc-CCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhcc
Q 018113          195 LGPVAPFDAAACFLAIGMVIILSSWTENY-GDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPA  273 (360)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (360)
                        ....|.+.+...++....+ ..++++. +++.++++..++.++..+.+.++|.+........++...... ....+|.
T Consensus       168 --~~~~f~inalsfl~~i~~l-~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a-~~aLlPl  243 (524)
T PF05977_consen  168 --AAAAFLINALSFLISILAL-LRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASA-VWALLPL  243 (524)
T ss_pred             --HHHHHHHHHHHHHHHHHHH-HHccccccccccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhH-HHHhhhH
Confidence              2345655554444433333 3333322 222233344566677777778888776554434433333222 3455788


Q ss_pred             ccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 018113          274 LSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLL  328 (360)
Q Consensus       274 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  328 (360)
                      +.++..+.++   |.+.+..++++++|+++.+++.+|+++++  .+..+....++++.
T Consensus       244 ~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~--lv~~~~~~~a~~~~  299 (524)
T PF05977_consen  244 FARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR--LVLLASLLFALALL  299 (524)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch--hhHHHHHHHHHHHH
Confidence            8777666555   67788889999999999999999988763  44444444444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.78  E-value=3.5e-16  Score=144.51  Aligned_cols=257  Identities=14%  Similarity=0.081  Sum_probs=151.7

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      ...++.+.+|+|-+ ....++.+...+...+..++.|+++|.||||..++.+.++..+|. .++-++|...++.+..+.|
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~G  142 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYG  142 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHH
Confidence            34478999999864 566788888888888999999999999999999999999999998 8899999999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVI  214 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  214 (360)
                      +|.|.... . ...++|. .+|.+....  ....    .........++.++..+..+.+|||  .|+...+...+..+.
T Consensus       143 vgaG~~~~-~-~~~isEl~p~k~R~~~~--~~~~----~~~i~~~~~~~~ia~~~~~~~~WRw--~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  143 VGAGVQEL-A-ALAISELVPNKWRGLGL--AIAS----IPFIITTWISPLIAQLFAAHSGWRW--IFYIFIIWSGIALVL  212 (599)
T ss_pred             HhhHHHHH-H-HHHHHHhcccchhhhHh--HHHH----HHHHhhhcccHHHHHHhccCCCcch--HHHHHHHHHHHHHHH
Confidence            99777643 3 3257776 333332111  1111    1222222344555555444445665  455544444443333


Q ss_pred             Hh-hhhccccCCC-CcchhHHHHHHH-H----------------------------------------------------
Q 018113          215 IL-SSWTENYGDP-SESKDLLTQFRG-A----------------------------------------------------  239 (360)
Q Consensus       215 ~~-~~~~~~~~~~-~~~~~~~~~~~~-~----------------------------------------------------  239 (360)
                      .. +..|+++++. .++....++.++ +                                                    
T Consensus       213 ~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~  292 (599)
T PF06609_consen  213 IFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEW  292 (599)
T ss_pred             HHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhh
Confidence            32 2223322111 111111111111 0                                                    


Q ss_pred             ---------HHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcc------hhHHHHHHHHHHHHHHHHHHHH
Q 018113          240 ---------AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIP------HGFIFATFMLASMLGSSLASRL  304 (360)
Q Consensus       240 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l  304 (360)
                               ..+++|++|.+...+...+..+..+.....+.|......++.+      .+.......++..++..+.+.+
T Consensus       293 ~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l  372 (599)
T PF06609_consen  293 FGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLL  372 (599)
T ss_pred             hccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHH
Confidence                     0146777555444444433344333334455555433333222      2455566788888899999999


Q ss_pred             HhhcCCChhhHHHHHHHHHHH
Q 018113          305 MARSPPRVESYMQIVFVVSSV  325 (360)
Q Consensus       305 ~dr~g~~~~~~~~~~~~~~~~  325 (360)
                      ..|++|-| ..+..+......
T Consensus       373 ~~~ir~~K-w~li~~~~~~ta  392 (599)
T PF06609_consen  373 FSKIRHIK-WQLIFGSVLMTA  392 (599)
T ss_pred             HHHccchh-HHHHHHHHHHHH
Confidence            99987764 444444444433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.78  E-value=7.1e-17  Score=151.14  Aligned_cols=245  Identities=18%  Similarity=0.177  Sum_probs=151.5

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhh
Q 018113           73 EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVA  151 (360)
Q Consensus        73 ~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~  151 (360)
                      +.+++.+...++..+++++.|+++|++|||+.++.+.+++.++. ++++++|+.++.++|++.|+|.|...... +.+++
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~-piy~s  168 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLA-PVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcc-hhhHh
Confidence            44899999999999999999999999999999999999999988 88999999999999999999999997655 76999


Q ss_pred             hc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhcccc-----
Q 018113          152 EH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENY-----  223 (360)
Q Consensus       152 ~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  223 (360)
                      |.   +.||......+.....+..    ++..++.....     ..++||..+.+..+..++..+. ....||++     
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~----~~~~~~~~~~~-----~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~  238 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGIL----LGYCINYGTSK-----VYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIE  238 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHH----HHHHHhhhhcc-----CCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHH
Confidence            97   5677755544444443333    33222222111     1156777776665555554444 24444432     


Q ss_pred             -CCCCcchhHHHHHHH----------------------------HHHHHhc--chh-HHHHHHHHHHHHhhHHHHHHhhh
Q 018113          224 -GDPSESKDLLTQFRG----------------------------AAVAIAS--DEK-IALLGAIQSLFEGSMYTFVFLWT  271 (360)
Q Consensus       224 -~~~~~~~~~~~~~~~----------------------------~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~  271 (360)
                       ++.+++++..++.+.                            .++++++  .++ .........+.+...+.....|.
T Consensus       239 ~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~  318 (513)
T KOG0254|consen  239 KGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYS  318 (513)
T ss_pred             cCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeeh
Confidence             222221111111110                            0111222  111 22223333334444444445666


Q ss_pred             ccccCCCCCcch-hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHh
Q 018113          272 PALSPNDEEIPH-GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLP  330 (360)
Q Consensus       272 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~  330 (360)
                      +.+++.....+. ........+..+++..+...+.||+|||+  .++.+.....++..+.
T Consensus       319 ~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~--lll~s~~~m~~~~~~~  376 (513)
T KOG0254|consen  319 TTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRK--LLLFGAAGMSICLVIL  376 (513)
T ss_pred             HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHhHHHHHHHHHHH
Confidence            666655443333 44445556778888888899999999994  5555555544444433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.77  E-value=3.2e-16  Score=141.22  Aligned_cols=249  Identities=18%  Similarity=0.229  Sum_probs=148.2

Q ss_pred             HHhhC--CChhhhH----HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-H---HHhcchHHHHHHHHHH
Q 018113           64 YSTYG--FGKGEIG----QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I---TKHSPQYKILMIGRIL  133 (360)
Q Consensus        64 ~~~~g--~s~~~~g----~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l---~~~~~~~~~l~~~r~l  133 (360)
                      .+++|  .++++..    .+.+...+++++++.+.|.++||+|||..+..+.++..++. +   +...++++++.++|++
T Consensus        46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i  125 (485)
T KOG0569|consen   46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLI  125 (485)
T ss_pred             HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            35566  4444443    45667888999999999999999999999999988887754 2   3457899999999999


Q ss_pred             HHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHH--hhhhhhhhcccCCCCchhhhhhHHHH
Q 018113          134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILS--GLFGNLLVDSFSLGPVAPFDAAACFL  208 (360)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~  208 (360)
                      .|+..+...... ++++.|.   +.||........    +..+|..+|..++  .+++.    .  -.|.+.+....+..
T Consensus       126 ~Gl~~gl~~~~~-pmyl~E~sP~~~RG~~g~~~~~----~~~~g~ll~~~~~l~~ilGt----~--~~W~~l~~~~~i~~  194 (485)
T KOG0569|consen  126 VGLACGLSTGLV-PMYLTEISPKNLRGALGTLLQI----GVVIGILLGQVLGLPSLLGT----E--DLWPYLLAFPLIPA  194 (485)
T ss_pred             HHHHhHHHHHHH-HHHHhhcChhhhccHHHHHHHH----HHHHHHHHHHHHccHHhcCC----C--cchHHHHHHHHHHH
Confidence            999998886665 7799997   678874443333    3334443333332  11222    1  23445555555555


Q ss_pred             HHHHHHHhhhhccccC-------CCCcchhHHHHH-----------------H---------HHHHHHhcchhHHHH---
Q 018113          209 AIGMVIILSSWTENYG-------DPSESKDLLTQF-----------------R---------GAAVAIASDEKIALL---  252 (360)
Q Consensus       209 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-----------------~---------~~~~~~~~~~~~~~~---  252 (360)
                      ++..... ++.||+++       +++++++..+..                 +         .+.+++++|+....-   
T Consensus       195 ~~~l~~l-~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i  273 (485)
T KOG0569|consen  195 LLQLALL-PFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLI  273 (485)
T ss_pred             HHHHHHH-hcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHH
Confidence            5544444 56666532       222222111100                 0         024467776554432   


Q ss_pred             -HHHHHHHHhhHHHHHHhhhccccCCC-CCcch-hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHH
Q 018113          253 -GAIQSLFEGSMYTFVFLWTPALSPND-EEIPH-GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS  326 (360)
Q Consensus       253 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  326 (360)
                       .......+.........|...++++. ...+. .......+....+.++++.++.||.|||+  .++.+.....+.
T Consensus       274 ~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRp--Lll~~~~~~~~~  348 (485)
T KOG0569|consen  274 GIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRP--LLLISLSLMAVA  348 (485)
T ss_pred             HHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHH
Confidence             22222223333333344555444432 22222 35556667889999999999999999995  444444433333

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=4.1e-18  Score=145.57  Aligned_cols=232  Identities=20%  Similarity=0.226  Sum_probs=167.7

Q ss_pred             HHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhh
Q 018113           64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLF  142 (360)
Q Consensus        64 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~  142 (360)
                      .++.+-+++++|+++....+...+.+++.|.+.||+|+|..+++|...+..+. +.++.+++++++++|.+||+|.+...
T Consensus        98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~  177 (464)
T KOG3764|consen   98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD  177 (464)
T ss_pred             ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence            34566778899999999999999999999999999999999999999999987 88999999999999999999999998


Q ss_pred             hhhhhHHhhhc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhh
Q 018113          143 SAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSS  218 (360)
Q Consensus       143 ~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (360)
                      ++..+ +++|.    ++|++..+..-.+.+        +|.+++|.+++.+.+..|  ...+|++.+.++++-..+....
T Consensus       178 tsgla-mlAd~f~~d~er~~vmGialgfis--------lG~lvgPpfGGilYe~~G--k~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  178 TSGLA-MLADVFPEDNERGSVMGIALGFIS--------LGVLVGPPFGGILYEFAG--KSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             hhhHH-HHHHHcccchhhhHHHHHHHHHHh--------ccceecCCcccchHhhcC--CcCcHHHHHHHHHHHHHHHHhe
Confidence            88877 76664    567775555444433        777888888888887655  4588999888887777766544


Q ss_pred             hccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCc---chhHHHHHHHHHHH
Q 018113          219 WTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI---PHGFIFATFMLASM  295 (360)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  295 (360)
                      .++.+.++++.++     ..+..+++++|.++............ ..+..--++.++.+....   ..+..+....+...
T Consensus       247 i~p~~~~~~~~~~-----~~~~~~Ll~dP~I~~~agai~~~n~~-lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~  320 (464)
T KOG3764|consen  247 IEPTEMDPDSTEQ-----GTPMWSLLMDPYILLIAGAITFSNSS-LAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYA  320 (464)
T ss_pred             eCccccCcccccc-----CccHHHHHhCchHhhhhcchhhccch-HHHhCcccHHHHHHhccCCCcceeeeecccccchh
Confidence            4433332221111     12344678888888765544433322 222222233333343332   22566666778899


Q ss_pred             HHHHHHHHHHhhcCCCh
Q 018113          296 LGSSLASRLMARSPPRV  312 (360)
Q Consensus       296 ~~~~~~g~l~dr~g~~~  312 (360)
                      ++..+.|.+.||++..+
T Consensus       321 ig~~lfg~la~k~~~~~  337 (464)
T KOG3764|consen  321 IGTNLFGKLADKYPHLR  337 (464)
T ss_pred             ccCchHHHHHHhcCchh
Confidence            99999999999999543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.75  E-value=1.4e-15  Score=129.09  Aligned_cols=261  Identities=16%  Similarity=0.152  Sum_probs=179.8

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGI  136 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~  136 (360)
                      +|.++++.+|+|+|.+..|.+.+...+...+.+++..+++.|+|.++.+..++++.+++.+.--..+.+.++.+-.+.|.
T Consensus        32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l~G~  111 (395)
T COG2807          32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLLAGA  111 (395)
T ss_pred             hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence            68899999999999999999999999999999999999999999999999999999998855333477888999999999


Q ss_pred             HhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHh
Q 018113          137 ATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL  216 (360)
Q Consensus       137 ~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (360)
                      +.+..+... +..+.++-.  +..+.....++.....|.++++.+...+....   .+|++...++..  ..++..+...
T Consensus       112 gIav~nVLL-PslIK~~Fp--k~~~~mtglYs~sl~~~aaLaa~lavpla~~~---~gW~~aL~~WAl--~allAl~~Wl  183 (395)
T COG2807         112 GIAVINVLL-PSLIKRDFP--KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS---GGWRGALGFWAL--LALLALLIWL  183 (395)
T ss_pred             hHHHHHHhh-hHHHHhhcc--cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh---ccHHHHHHHHHH--HHHHHHHHHh
Confidence            999887666 436665521  22344666777777777777777777776652   245554444443  3333333222


Q ss_pred             hhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcc--hhHHHHHHHHHH
Q 018113          217 SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIP--HGFIFATFMLAS  294 (360)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  294 (360)
                      +...+++ ....+.+     ..+...++|+|..|.+.+...+.....|. ...|+|.+..|+.-..  .+...+...+..
T Consensus       184 Pq~~r~~-~~~~~~~-----~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~-~~~WLP~ili~~G~sa~~aG~llsl~~l~~  256 (395)
T COG2807         184 PQALREQ-AASIATK-----LVSVRKVWRSPLAWQVTLFMGLQSLLYYI-VIGWLPAILIDRGLSAAEAGSLLSLMQLAQ  256 (395)
T ss_pred             hhccccc-ccccccc-----cccccccccCchhHHHHHHHHhhHHHHHH-HHHHHHHHHHHcCCCHHHhhhHHHHHHHHH
Confidence            2211111 1111111     01123579999999988877776665555 7999999887653222  267788889999


Q ss_pred             HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhHhc
Q 018113          295 MLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVT  333 (360)
Q Consensus       295 ~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  333 (360)
                      ++.++..+.+.+|.+.++ ...........+..+-..+.
T Consensus       257 ~~~~ll~P~la~R~~n~r-~~~~~~~~~~l~G~~G~~~~  294 (395)
T COG2807         257 LPTALLIPLLARRSKNQR-PLVVLALLLMLVGLVGLLLA  294 (395)
T ss_pred             HHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHh
Confidence            999999999999865544 34444444444444433333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.74  E-value=4.5e-15  Score=134.58  Aligned_cols=245  Identities=15%  Similarity=0.003  Sum_probs=140.8

Q ss_pred             hhhhHHHHHHHHhhCCChhhhHHH--HHHHHHHHhhhhhhh-hhhhhhhcchHHHHHHHHHH-HHHH-HHH---hcch-H
Q 018113           54 WLQGPYVYYLYSTYGFGKGEIGQL--FIAGFGSSMLFGTIV-GSLADKQGRKRACVTYCLTY-ILSC-ITK---HSPQ-Y  124 (360)
Q Consensus        54 ~~~~~~~~~~~~~~g~s~~~~g~~--~~~~~~~~~~~~~~~-G~l~Dr~Grr~~l~~~~~~~-~~~~-l~~---~~~~-~  124 (360)
                      ++..|++|.+.+|.|.|.+++|..  .........+.+|+. ++..||+||||..++...+. +... ..+   ...+ .
T Consensus        18 ~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~   97 (390)
T TIGR02718        18 GLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGA   97 (390)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhH
Confidence            334688999999999999999987  355677788888877 44799999999876665332 2112 222   2222 2


Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhh
Q 018113          125 KILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAA  204 (360)
Q Consensus       125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~  204 (360)
                      ..++....+.++..+...+.... +..|. .|++..+......    ..|..+|..+++.....+.+..  +|+.+|++.
T Consensus        98 ~~~~~~~~~~~~~~a~~d~~~d~-~~~~~-~~~~~~~~~~~~~----~~g~~lG~~~g~~~~~~l~~~~--gw~~~f~~~  169 (390)
T TIGR02718        98 GWAVGLLACASLASATQDIATDG-MAAEH-FNGRTLAKGNAVQ----IAGVMIGFFGGGAGTLVLFGKF--GQRPAFLLV  169 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHh-CCHhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHH
Confidence            23344444444555555444433 43443 1222222222223    3344456666666555655554  566778777


Q ss_pred             HHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcchh
Q 018113          205 ACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG  284 (360)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (360)
                      +.+.++..+.. ...+|++++++++++   +..++.++.+|+|+.+.......+....... ...+.+.|.+| .+.+..
T Consensus       170 a~l~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~-~G~s~~  243 (390)
T TIGR02718       170 ACVPLASLVCV-LWLKDRAVASPEAPL---ARRASLFRFFRRPLAWSLLALALLSAMTAVS-GFGLSKLYLVD-AGWPLE  243 (390)
T ss_pred             HHHHHHHHHHH-HHcCCCCcCccccch---hhHHHHHHHHcCcCHHHHHHHHHHHHHHHHH-HHHHhhHHHHh-cCCCHH
Confidence            76665544444 223332221111111   1122455778888877665555554444434 35567777766 366553


Q ss_pred             ---HHHHHHH-HHHHHHHHHHHHHHhhcCCCh
Q 018113          285 ---FIFATFM-LASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       285 ---~~~~~~~-~~~~~~~~~~g~l~dr~g~~~  312 (360)
                         ....... ...+++..+.|++.||+|+|+
T Consensus       244 ~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~  275 (390)
T TIGR02718       244 WIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR  275 (390)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence               3334333 356677899999999999885

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.73  E-value=7.2e-16  Score=142.00  Aligned_cols=266  Identities=13%  Similarity=0.158  Sum_probs=187.6

Q ss_pred             ccchhHHHHHHHHHHHH-Hhhhh---hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHH
Q 018113           35 FNSFKNNYLLVYSLMMA-GDWLQ---GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL  110 (360)
Q Consensus        35 ~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~  110 (360)
                      ...+.|.+....++... .++..   +.+.+.++++++.+.++++++.++......+.+|+.+.+.||+|.|++.+.|.+
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~  119 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL  119 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence            45566777766655544 34544   455889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHhcchHHHHHH-HHHHHHhHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018113          111 TYILSC-ITKHSPQYKILMI-GRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG  186 (360)
Q Consensus       111 ~~~~~~-l~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  186 (360)
                      +..++. +.+++++.+.+++ .-++.|+|.+..+..... ++..+  ++|+..        +.....|.++|..+-|.+.
T Consensus       120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiv-iv~~YF~kkR~lA--------~Gia~~GsG~G~~~~~~l~  190 (509)
T KOG2504|consen  120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVV-ILGTYFEKKRALA--------TGIAVSGTGVGTVVFPPLL  190 (509)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhh-hhhhHhHHHHHHH--------HhhhhccCCcceeeHHHHH
Confidence            999998 8899999987766 468999999999887744 77776  556552        2233457778889889999


Q ss_pred             hhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhc---cc-------------------------cCCCCc--c------h
Q 018113          187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWT---EN-------------------------YGDPSE--S------K  230 (360)
Q Consensus       187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------------~~~~~~--~------~  230 (360)
                      ..+.+..||++  .+++...+.+-.........|   +.                         ..++++  .      +
T Consensus       191 ~~l~~~~G~r~--~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (509)
T KOG2504|consen  191 KYLLSKYGWRG--ALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNL  268 (509)
T ss_pred             HHHHHHhCcHH--HHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccch
Confidence            99888877665  444443333322222222222   00                         000000  0      0


Q ss_pred             hH-------HH--HHHHH----HHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch--hHHHHHHHHHHH
Q 018113          231 DL-------LT--QFRGA----AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH--GFIFATFMLASM  295 (360)
Q Consensus       231 ~~-------~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  295 (360)
                      +.       .+  ..+..    ..++++++.++.+.....+...+.+. ...++|.|.++....+.  +...++.++..+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~-p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i  347 (509)
T KOG2504|consen  269 ATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNV-PFVYLPSYAKSLGLSSNDAAFLLSIIGVSDI  347 (509)
T ss_pred             hhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCChhhhHHHHHHHHHhhh
Confidence            00       00  11111    24788999999888777777666666 57788888874432222  577888899999


Q ss_pred             HHHHHHHHHHhhcCCCh
Q 018113          296 LGSSLASRLMARSPPRV  312 (360)
Q Consensus       296 ~~~~~~g~l~dr~g~~~  312 (360)
                      +++++.|++.|+...++
T Consensus       348 ~gRi~~G~laD~~~~~~  364 (509)
T KOG2504|consen  348 IGRIILGLLADKPGIRA  364 (509)
T ss_pred             hhhhhhhhhcCccccch
Confidence            99999999999988554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.72  E-value=7.5e-15  Score=135.94  Aligned_cols=142  Identities=16%  Similarity=0.152  Sum_probs=103.7

Q ss_pred             hHHHHHHHH-h--hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhh-hcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHH
Q 018113           57 GPYVYYLYS-T--YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQYKILMIGR  131 (360)
Q Consensus        57 ~~~~~~~~~-~--~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r  131 (360)
                      .+++|.+.+ +  +|++..+.|.+.+.......++++++|+++|| +|||+++.++.++.+++. +.+++++++.+.++|
T Consensus        30 ~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~  109 (475)
T TIGR00924        30 QGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGL  109 (475)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHH
Confidence            566665544 4  89999999999999999999999999999999 899999999999999987 777888888889999


Q ss_pred             HHHHhHhhhhhhhhhhHHhhhc---cc---cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhH
Q 018113          132 ILGGIATSLLFSAFESWLVAEH---NK---RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAA  205 (360)
Q Consensus       132 ~l~G~~~~~~~~~~~~~~i~~~---~~---r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~  205 (360)
                      .+.|++.|...+...+ +++|.   ++   |+...+    ......+    +|..+++.+++.+.+..+  |+..|...+
T Consensus       110 ~l~g~g~g~~~~~~~~-~~a~~~~~~~~~~r~~~~~----~~~~~~n----iG~~ig~~l~g~l~~~~g--~~~~f~~~~  178 (475)
T TIGR00924       110 GTIAVGSGLFKANPSS-MVGKLYERGDMPRRDGGFT----LFYMSIN----IGSFISPLLAGVIAENYG--YHVGFNLAA  178 (475)
T ss_pred             HHHHhccccccCCHHH-HHHHhcCCCCcccccceeh----hHHHHHH----HHHHHHHHHHHHHHHhcC--hHHHHHHHH
Confidence            9999999988777745 76664   11   333222    2222333    455555555555555444  556666655


Q ss_pred             HHHH
Q 018113          206 CFLA  209 (360)
Q Consensus       206 ~~~~  209 (360)
                      ...+
T Consensus       179 ~~~~  182 (475)
T TIGR00924       179 VGMV  182 (475)
T ss_pred             HHHH
Confidence            4333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09669 putative symporter YagG; Provisional

Probab=99.70  E-value=2.1e-14  Score=132.38  Aligned_cols=247  Identities=13%  Similarity=0.160  Sum_probs=139.8

Q ss_pred             hHH-HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhh----hcch-HHHHHHHHHHHHHH-HHHhcch------
Q 018113           57 GPY-VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRK-RACVTYCLTYILSC-ITKHSPQ------  123 (360)
Q Consensus        57 ~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr----~Grr-~~l~~~~~~~~~~~-l~~~~~~------  123 (360)
                      ..+ .+++.+++|+|+.++|.++.+..+...+..|+.|.++||    +||| +.++.+....+++. +....++      
T Consensus        29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~  108 (444)
T PRK09669         29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK  108 (444)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence            344 556667899999999999999999999999999999998    7875 44556666666655 3333332      


Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhHHhhhc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-ccCCCCc
Q 018113          124 YKILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD-SFSLGPV  198 (360)
Q Consensus       124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~-~~~~~~~  198 (360)
                      ...+++..++.+.+.........+ +.+|.    ++|.+..+.......    +|..+++.+...+...+.+ ....+|+
T Consensus       109 ~~~~~~~~~l~~~~~t~~~ip~~a-l~~~~t~~~~eR~~l~~~r~~~~~----~G~~i~~~~~~pl~~~~~~~~~~~g~~  183 (444)
T PRK09669        109 IIYACVTYILLSLVYTAINVPYCA-MPGAITNDPRERHSLQSWRFALSF----IGGLIVSVIALPLVDILGKGDEQKGYF  183 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHH-hHHHhcCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence            345555566666655555444433 55553    556554443333333    3333443433333322211 1123455


Q ss_pred             hhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCC
Q 018113          199 APFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND  278 (360)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (360)
                      ..+.+.+++..+..+......+|++.++++++   .+..+..++++|||+++.......+....... .....+.|.+..
T Consensus       184 ~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~-~~~~~~y~~~~~  259 (444)
T PRK09669        184 YAMMVMGLLGVVLFFCCFFMTKERYTPEVDNS---SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVT-RGGATLYYVNYV  259 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEEecCCCCcCC---CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-Hhhhhheeeeee
Confidence            55555555555444444333344322221111   22344566788999988765554443332221 222233333333


Q ss_pred             CCcch--hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          279 EEIPH--GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       279 ~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      .+.+.  +.......+..+++.++.+++.||+|+|+
T Consensus       260 ~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~  295 (444)
T PRK09669        260 LLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR  295 (444)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            32222  23444445677788899999999999885

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.70  E-value=8.3e-16  Score=140.99  Aligned_cols=266  Identities=17%  Similarity=0.179  Sum_probs=163.6

Q ss_pred             HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhh----hhcchHHHH-HHHHHHHHHH-HHHhc-c-------hHH
Q 018113           60 VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACV-TYCLTYILSC-ITKHS-P-------QYK  125 (360)
Q Consensus        60 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~Grr~~l~-~~~~~~~~~~-l~~~~-~-------~~~  125 (360)
                      .+.+.+..|+++..+|.+....-+...+..|+.|.++|    |+||||..+ .+....+++. ++... |       ...
T Consensus        25 ~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~  104 (428)
T PF13347_consen   25 LYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLV  104 (428)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHH
Confidence            55666778999999999999999999999999999999    899766555 5667777766 44433 3       223


Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhHHhhhc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccC-CCCchh
Q 018113          126 ILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS-LGPVAP  200 (360)
Q Consensus       126 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~-~~~~~~  200 (360)
                      .+.+..++..++.........+ +..|.    ++|.+..+......    .+|..+...+.+.+...+.+... .+|+..
T Consensus       105 ~~~~~~~l~~~~~t~~~i~~~a-l~~~lt~~~~~R~~l~~~~~~~~----~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~  179 (428)
T PF13347_consen  105 WLFVFYILFDIAYTFVQIPYNA-LIPELTPDPDERTRLSSWRMIFS----MIGSLLASFLAPILVSWFGGGDTSNGYRWM  179 (428)
T ss_pred             HHHHHHHHHHHhhhhccCchhh-cCccccccHhhhhhHHHHHHHHH----HHHHHHHHHHhhhhhhhhccCccchHHHHH
Confidence            3456666667777776555544 55553    56666444433333    33333333344433333222111 145566


Q ss_pred             hhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCC
Q 018113          201 FDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE  280 (360)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (360)
                      ..+.+++..+.........+|++++. ++++...+.++..++++|||++..+.....+....... .....+.|.++..+
T Consensus       180 ~~v~~iv~~v~~~i~~~~~ke~~~~~-~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~-~~~~~~y~~~~vl~  257 (428)
T PF13347_consen  180 ALVLAIVGLVFFLITFFFVKERSVEV-TEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFAL-MNTFLPYYFTYVLG  257 (428)
T ss_pred             HHHHHHHHHHHhhhhhheeeeccccc-cccccccccccchhhhcccchHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHhc
Confidence            66666666666665545556622222 22222334555677889999988776666554443333 34444545444333


Q ss_pred             cch--hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhHhcc
Q 018113          281 IPH--GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTI  334 (360)
Q Consensus       281 ~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  334 (360)
                      .+.  +.......+..+++.++.++++||+|+|+  ....+..+..+......+..
T Consensus       258 ~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~--~~~~~~~~~~~~~~~~~~~~  311 (428)
T PF13347_consen  258 NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKK--VYIIGLLLAALGFLLLFFLG  311 (428)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHcccee--ehhhhHHHHHHHHHHHHHHH
Confidence            332  45566778889999999999999999994  55555555555555544443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.70  E-value=6.4e-14  Score=127.73  Aligned_cols=280  Identities=17%  Similarity=0.117  Sum_probs=158.3

Q ss_pred             HHHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhh----hhcchHHHHHHHHH-HHHHH-HHHhcch
Q 018113           50 MAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACVTYCLT-YILSC-ITKHSPQ  123 (360)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~Grr~~l~~~~~~-~~~~~-l~~~~~~  123 (360)
                      ++....+.++++.+.+++|.++.+.+.+.....+.+.+.+++.|.++|    |+||||.++.+... ..++. +.+++++
T Consensus        17 q~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~   96 (477)
T TIGR01301        17 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD   96 (477)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence            444455578877888999999999999999999999999999999999    59999998886444 44455 5566655


Q ss_pred             HH-----------------HHHHHHHHHHhHhhhhhhhhhhHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018113          124 YK-----------------ILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (360)
Q Consensus       124 ~~-----------------~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  185 (360)
                      ..                 ..+++-.+..++.....+...+ +++|. .++.+..+......+....+|+.+|..++...
T Consensus        97 ~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rA-LiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301        97 IGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRA-FLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             hhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            42                 2233333444566666676645 88886 21111111122233333344444444444332


Q ss_pred             h--h---hh----hcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcc--------h-h--HHHHHHHHHHHHhc
Q 018113          186 G--N---LL----VDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSES--------K-D--LLTQFRGAAVAIAS  245 (360)
Q Consensus       186 ~--~---~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~--~~~~~~~~~~~~~~  245 (360)
                      .  .   ..    .+....+.+..|.+.+++.++...+.....+|++..+++.        + +  ..+..++-++.+.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  255 (477)
T TIGR01301       176 GLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKY  255 (477)
T ss_pred             hHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHH
Confidence            1  0   00    0111224567788877777777776656666654311110        0 0  01111222222333


Q ss_pred             c-hhHHHHHHHHHHHHhhHHHHHHhhhccccC-CCCCc--------chh-----HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 018113          246 D-EKIALLGAIQSLFEGSMYTFVFLWTPALSP-NDEEI--------PHG-----FIFATFMLASMLGSSLASRLMARSPP  310 (360)
Q Consensus       246 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~-----~~~~~~~~~~~~~~~~~g~l~dr~g~  310 (360)
                      - +..+.++....+...+.+.+ ..|...|.. +.++.        +.+     .....+.+...+.+++..++.+|+|+
T Consensus       256 mP~~m~~l~~vqffsW~a~f~~-~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~  334 (477)
T TIGR01301       256 LPRPVWILLLVTCLNWIAWFPF-ILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGA  334 (477)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2 44556666777766666664 444444432 22221        112     23344455566777888999999986


Q ss_pred             ChhhHHHHHHHHHHHHHHHhHh
Q 018113          311 RVESYMQIVFVVSSVSLLLPIV  332 (360)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~  332 (360)
                      |+ +....+..+.++++....+
T Consensus       335 ~k-~~~~~s~~~~~~~l~~~~~  355 (477)
T TIGR01301       335 GK-RLWGIVNIILAICLAATVL  355 (477)
T ss_pred             ch-hHHHHHHHHHHHHHHHHHH
Confidence            43 4445665566655555543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.70  E-value=3.3e-14  Score=127.87  Aligned_cols=272  Identities=17%  Similarity=0.141  Sum_probs=164.2

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhc-chHHHHHHHHHHHHHH-H
Q 018113           40 NNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-RKRACVTYCLTYILSC-I  117 (360)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~G-rr~~l~~~~~~~~~~~-l  117 (360)
                      .++-...++..+..+...|+.+...++.|+|..|+|.+.+...+...+.++++|.++||.+ +||.+.+..+..++.. .
T Consensus         5 ~rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~   84 (400)
T PF03825_consen    5 FRLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL   84 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence            3444455566666677789999999999999999999999999999999999999999986 5777777767666655 5


Q ss_pred             HHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhcccCC
Q 018113          118 TKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAIL-SGLFGNLLVDSFSL  195 (360)
Q Consensus       118 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~-~~~l~~~l~~~~~~  195 (360)
                      ....++++.++..-++..+......|...+ +.-+. ++++..-+..+..-++    |..++... +..+.+.    .++
T Consensus        85 ~~~~~~f~~~~~~~~l~~~~~~p~~pl~ds-i~~~~~~~~~~~YG~iRlwGSi----Gf~~~~~~~~~~~~~~----~~~  155 (400)
T PF03825_consen   85 LAFSSSFWWLFVIMLLFSFFFSPTMPLSDS-IALSYLGDRGKDYGRIRLWGSI----GFIVAALAFGGLLGGY----LGI  155 (400)
T ss_pred             HHHhccHHHHHHHHHHHHHHHccHHHHHHH-HHHHHcccccCCCCcchhhhhH----HHHHHHHHHHHHHHhh----hcc
Confidence            566788888888777777777766666655 43333 3332322223323332    33222221 1112221    122


Q ss_pred             C-CchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccc
Q 018113          196 G-PVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL  274 (360)
Q Consensus       196 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (360)
                      + ....+++.+....+..... ...|+.+++++++++..++...+..+++|||++..+.+...+.+..... ...+.+.|
T Consensus       156 ~~~~~~~~i~~~~~~ll~~~~-l~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~-~~~f~~~y  233 (400)
T PF03825_consen  156 SGTSLIFYIAAILSLLLAGFA-LFLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAA-YYTFFSIY  233 (400)
T ss_pred             ccccHHHHHHHHHHHHHHHHH-HhCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            2 1223444433332222222 2334433222222121222222334789999988876665555443333 46777888


Q ss_pred             cCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 018113          275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSS  324 (360)
Q Consensus       275 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~  324 (360)
                      +++..+.+.   +...++..+.+++.-...+++.+|+|.|+  .+.++.....
T Consensus       234 l~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~--ll~~a~~~~~  284 (400)
T PF03825_consen  234 LQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW--LLLLALVAYA  284 (400)
T ss_pred             HHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHH
Confidence            877654322   45566777889999999999999999883  4444444333

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.68  E-value=8.4e-15  Score=137.81  Aligned_cols=255  Identities=15%  Similarity=0.089  Sum_probs=157.1

Q ss_pred             HHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhh
Q 018113           64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLF  142 (360)
Q Consensus        64 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~  142 (360)
                      .+.++.+........+..+++..+++.++|+++||+|||++++.+.++..++. ..++++|++.+++.|++.|++.+...
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~  189 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL  189 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence            46677778888888899999888999999999999999999999999999966 88999999999999999999999998


Q ss_pred             hhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHh---
Q 018113          143 SAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL---  216 (360)
Q Consensus       143 ~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---  216 (360)
                      ..... ++.|.   ++|+..... ..        ....++.+.+..++++.+    +||+.+++......+..+...   
T Consensus       190 ~~~~~-~~~E~~~~~~R~~~~~~-~~--------~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~~~l~~  255 (521)
T KOG0255|consen  190 TVGFG-LVAEIVSPKQRGLALTL-GG--------FFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLLWFLPP  255 (521)
T ss_pred             HHhHh-hheeecCcchhhHHHHH-HH--------HHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHccC
Confidence            88744 88887   666663333 11        112344555555555553    455666665555444433321   


Q ss_pred             --hhhccccCCCCcchhHHHHHH-------------------H-----------HHHHHhcchhHHHHHHHHHHHHhhHH
Q 018113          217 --SSWTENYGDPSESKDLLTQFR-------------------G-----------AAVAIASDEKIALLGAIQSLFEGSMY  264 (360)
Q Consensus       217 --~~~~~~~~~~~~~~~~~~~~~-------------------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (360)
                        +++...+++.+++++..++..                   .           ...++++.|+.........+.. ..+
T Consensus       256 Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~-~~~  334 (521)
T KOG0255|consen  256 ESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIW-FVF  334 (521)
T ss_pred             cChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHH-HHH
Confidence              222222333222222111110                   0           0123444444333322222222 111


Q ss_pred             HHHHhhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhHhccCC
Q 018113          265 TFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTIPG  336 (360)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (360)
                      . ...+.-.+.....+.+...................+...||.|||  ...........++++...+....
T Consensus       335 ~-~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~--~~~~~~~~~~~~~~~~~~~~~~~  403 (521)
T KOG0255|consen  335 S-LVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRR--PPLFLSLFLAGIGLLLFGWLPDD  403 (521)
T ss_pred             h-HHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHhhcc
Confidence            1 122223333444555566666666667888888889999999888  45555555555555555555433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.67  E-value=8.1e-17  Score=140.18  Aligned_cols=186  Identities=16%  Similarity=0.102  Sum_probs=132.1

Q ss_pred             cchhHHHHHHHHHHHHHhhhh----hHHHHHHHHhh-C-------CChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchH
Q 018113           36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTY-G-------FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKR  103 (360)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-g-------~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~  103 (360)
                      .+++...+.+.....+.|++|    +...|.+...| |       +++...+.+..+..++...+++++|++.||+|||+
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            344556666777788889888    23333333322 2       44556678888889989999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HHHhcc-------hHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHH
Q 018113          104 ACVTYCLTYILSC-ITKHSP-------QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIF  172 (360)
Q Consensus       104 ~l~~~~~~~~~~~-l~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~  172 (360)
                      ++...++++.+++ +++++.       -..++...|++.|+|.|+-+|.. +++.+|.   ++||...+...+.++.+..
T Consensus       116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlS-AtI~SE~an~~~RGa~iaavFa~Qg~Gil  194 (538)
T KOG0252|consen  116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLS-ATIMSESANKKTRGAFIAAVFAMQGFGIL  194 (538)
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcch-HHHhhhhhhhccccceeEEEEEecchhHh
Confidence            9999999998877 555531       13577889999999999999998 4488887   7788888877778887777


Q ss_pred             HHHHHHHHHHhhhhhhhhc-----ccCCCCchhhhhhHHHHHHHHHHHhhhhcccc
Q 018113          173 LGNGLVAILSGLFGNLLVD-----SFSLGPVAPFDAAACFLAIGMVIILSSWTENY  223 (360)
Q Consensus       173 ~g~~~g~~~~~~l~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (360)
                      .|..++.++...+-..+-+     +.+.-||..+.+.++..+...... ...||++
T Consensus       195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~R-l~M~Et~  249 (538)
T KOG0252|consen  195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFR-LKMPETA  249 (538)
T ss_pred             hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhh-hcCCcch
Confidence            7776666665554433322     122337888877777666655555 4455543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.66  E-value=3.7e-13  Score=125.41  Aligned_cols=142  Identities=16%  Similarity=0.137  Sum_probs=96.6

Q ss_pred             hHH-HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhh-hcchHHHHHHHHHHHHHH-HHHhcc-hHHHHHHHHH
Q 018113           57 GPY-VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSP-QYKILMIGRI  132 (360)
Q Consensus        57 ~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~-l~~~~~-~~~~l~~~r~  132 (360)
                      .++ ..++.+++|+++++.+...+..........+++|+++|| +|||+++..+.++.+++. ++++++ +.+.+.++|+
T Consensus        41 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~  120 (500)
T PRK09584         41 QGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMA  120 (500)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            344 455568999999998887777655555555689999999 599999999999998887 666754 5566778899


Q ss_pred             HHHhHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHH
Q 018113          133 LGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAAC  206 (360)
Q Consensus       133 l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~  206 (360)
                      ++|++.|...+...+ ++.|.  +++.+..+. ...+.    .+..+|..++|.+++++.++.+  |+..|.+..+
T Consensus       121 l~gig~g~~~~~~~~-l~~~~f~~~~~~~~~~-~~~~~----~~~~iG~~~gp~i~g~l~~~~g--~~~~F~i~~i  188 (500)
T PRK09584        121 TIAVGNGLFKANPSS-LLSTCYEKDDPRLDGA-FTMYY----MSINIGSFFSMLATPWLAAKYG--WSVAFALSVV  188 (500)
T ss_pred             HHHHhhhcccCCHHH-HHHHhcCCCchhhhhc-chHHH----HHHHHHHHHHHHHHHHHHHhhC--HHHHHHHHHH
Confidence            999999988776644 77775  222221111 11222    2334666667777777666544  5566766554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.65  E-value=8.6e-14  Score=129.21  Aligned_cols=252  Identities=15%  Similarity=0.155  Sum_probs=138.7

Q ss_pred             hhhhHHH-HHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhh----hhcc-hHHHHHHHHHHHHHH-HHHhcch---
Q 018113           54 WLQGPYV-YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGR-KRACVTYCLTYILSC-ITKHSPQ---  123 (360)
Q Consensus        54 ~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~Gr-r~~l~~~~~~~~~~~-l~~~~~~---  123 (360)
                      ....+++ .++.+.+|+++.++|.++...-+...+..|+.|.++|    |+|| |+.++.+....+++. +....++   
T Consensus        23 ~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~  102 (473)
T PRK10429         23 GIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEG  102 (473)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCc
Confidence            3335664 4445567999999999999999999999999999999    6698 556666777767765 3333221   


Q ss_pred             ---HHHHHHHHHHHHhHhhhhhhhhhhHHhhh----ccccchhhHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhccc-C
Q 018113          124 ---YKILMIGRILGGIATSLLFSAFESWLVAE----HNKRGFEQQWLSITFSKAIFLGNGLVAILS-GLFGNLLVDSF-S  194 (360)
Q Consensus       124 ---~~~l~~~r~l~G~~~~~~~~~~~~~~i~~----~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~-~~l~~~l~~~~-~  194 (360)
                         +..+++..++.+++.........+ +..|    .++|.+..+......+    +|..+.+.+. +.+ ...-+.. .
T Consensus       103 ~~~~~~~~~~~~l~~~~~t~~~ip~~a-l~~~lt~~~~eR~~l~~~~~~~~~----ig~~~~~~~~~~~~-~~~g~~~~~  176 (473)
T PRK10429        103 TAQYVFVCVTYILWGMTYTIMDIPFWS-LVPTLTLDKREREQLVPYPRFFAS----LAGFVTAGFTLPFV-NYVGGGDRG  176 (473)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcchHHh-hhHHhCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-HHhCCCchh
Confidence               234445555666666655444433 4444    3667664444333322    2222222222 222 1111000 0


Q ss_pred             CCCchhhhhhHHHHHHHHHHHhhhhccccCCCC--cchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhc
Q 018113          195 LGPVAPFDAAACFLAIGMVIILSSWTENYGDPS--ESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP  272 (360)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (360)
                      -+|+....+.+++..+..+......+|+..+++  ++++...+.++..+.+++||+++.+.....+....... ...+.+
T Consensus       177 ~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~-~~~~~~  255 (473)
T PRK10429        177 FGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNI-INGFAI  255 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-Hhhhee
Confidence            123333344444444434343333444421111  11111123445556678998887766555554433333 344555


Q ss_pred             cccCCCCCcch--hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          273 ALSPNDEEIPH--GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       273 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      .|.+...+.+.  +.......+..+++.++.+++.||+|+|+
T Consensus       256 y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~  297 (473)
T PRK10429        256 YYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI  297 (473)
T ss_pred             eEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            55444333222  34445556788889999999999999985

>PRK09848 glucuronide transporter; Provisional

Probab=99.65  E-value=2.5e-13  Score=125.41  Aligned_cols=261  Identities=12%  Similarity=0.014  Sum_probs=143.2

Q ss_pred             hhHH-HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhh----cchHHH-HHHHHHHHHHH-HH-Hh----cch
Q 018113           56 QGPY-VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ----GRKRAC-VTYCLTYILSC-IT-KH----SPQ  123 (360)
Q Consensus        56 ~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~----Grr~~l-~~~~~~~~~~~-l~-~~----~~~  123 (360)
                      ..++ .+++.++.|+++.++|.+.+...+...+..++.|+++||.    ||||.. ..+.+...+.. +. ..    .++
T Consensus        27 ~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (448)
T PRK09848         27 GALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHS  106 (448)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcc
Confidence            3455 4556667899999999999999999999999999999986    777755 55555454433 22 11    111


Q ss_pred             --HHHHHHHHHHHHhHhhhhhhhhhhHHhhh----ccccchhhHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhcccCCC
Q 018113          124 --YKILMIGRILGGIATSLLFSAFESWLVAE----HNKRGFEQQWLSITFSK-AIFLGNGLVAILSGLFGNLLVDSFSLG  196 (360)
Q Consensus       124 --~~~l~~~r~l~G~~~~~~~~~~~~~~i~~----~~~r~~~~~~~~~~~~~-~~~~g~~~g~~~~~~l~~~l~~~~~~~  196 (360)
                        .........+.+++.+...+...+ +..|    .++|...........+. +...+..+++.+++..++..    ..+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~----~~~  181 (448)
T PRK09848        107 SKVVYAYLTYMGLGLCYSLVNIPYGS-LATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEM----VSV  181 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccHhh-hhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch----hhh
Confidence              223344456667777766655434 3332    35565543333222121 22233333443333222110    011


Q ss_pred             CchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccC
Q 018113          197 PVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP  276 (360)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (360)
                      +.....+..++..+..++.....+|+.++++++    ++..+..++++|||++........+....... .....|.|.+
T Consensus       182 ~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~  256 (448)
T PRK09848        182 YHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ----PSLKISLQTLKRNRPLFMLCIGALCVLISTFA-VSASSLFYVR  256 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC----CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HhhhheeeEe
Confidence            111111222222222223323344443222221    12344566789999998876666665554444 4556777777


Q ss_pred             CCCCcchh--HH-HHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 018113          277 NDEEIPHG--FI-FATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLL  328 (360)
Q Consensus       277 ~~~~~~~~--~~-~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  328 (360)
                      +..+.+..  .. .....++.+++.++.+++.||+|+|+  .+..+..+..+...
T Consensus       257 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~--~~~~g~~~~~i~~~  309 (448)
T PRK09848        257 YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN--TFLIGALLGTCGYL  309 (448)
T ss_pred             eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHH
Confidence            76665542  22 22234567788999999999999884  44444444444333

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.63  E-value=8.3e-14  Score=118.24  Aligned_cols=156  Identities=17%  Similarity=0.158  Sum_probs=114.5

Q ss_pred             ccchhHHHHHHHHHHHHHhhhhh----HHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHH
Q 018113           35 FNSFKNNYLLVYSLMMAGDWLQG----PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL  110 (360)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~  110 (360)
                      +.|.+|..........+.+.+..    -..|...+..|.+..|..++....+.+..+++..+|..+|++|||+.+....+
T Consensus        72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l  151 (528)
T KOG0253|consen   72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL  151 (528)
T ss_pred             cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence            46778877777766666665552    33677778899888899999999999889999999999999999999999988


Q ss_pred             HHHH-HHHHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018113          111 TYIL-SCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG  186 (360)
Q Consensus       111 ~~~~-~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  186 (360)
                      ...+ +.+.+.++|+..+++.|.+.|+|.|+ .|.... +-.|.   .+|+...-.. ..        ..+|.+....++
T Consensus       152 ~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~-~yle~lp~~~r~~~~V~~-~~--------waig~v~ea~la  220 (528)
T KOG0253|consen  152 VTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSA-IYLEFLPSSHRWLLTVMS-FF--------WAIGQVFEALLA  220 (528)
T ss_pred             HHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHH-HHHHhccCcCCCcchhHH-HH--------HHHHHHHHHHHH
Confidence            8888 44889999999999999999999999 576645 44443   4444421111 22        224455555555


Q ss_pred             hhhhcccCCCCchhh
Q 018113          187 NLLVDSFSLGPVAPF  201 (360)
Q Consensus       187 ~~l~~~~~~~~~~~~  201 (360)
                      -..+...||||++.+
T Consensus       221 w~vm~~~gwr~~l~~  235 (528)
T KOG0253|consen  221 WGVMSNFGWRYLLFT  235 (528)
T ss_pred             HHHHHhhhHHHHHHH
Confidence            555555678876544

>PTZ00207 hypothetical protein; Provisional

Probab=99.63  E-value=6.1e-14  Score=130.53  Aligned_cols=130  Identities=11%  Similarity=0.014  Sum_probs=98.4

Q ss_pred             chhHHHHHHHHHHHHHhhhh---hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHH
Q 018113           37 SFKNNYLLVYSLMMAGDWLQ---GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI  113 (360)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~  113 (360)
                      .++|..+..........+..   +.+.|.+.+++|+|.++++.+.+.+... ...+++.|++.||+|||+++.++.++.+
T Consensus        24 ~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~R~vllig~ll~~  102 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYLGPRPIFVLSMTVFC  102 (591)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            45566665555555544443   4558899999999999999988775543 3566689999999999999999999999


Q ss_pred             HHH-HHHhc------chHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHH
Q 018113          114 LSC-ITKHS------PQYKILMIGRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFS  168 (360)
Q Consensus       114 ~~~-l~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~  168 (360)
                      ++. +++++      ++++.+.+.|++.|+|.+...+.... .+.++  ++||...+......+
T Consensus       103 iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~-~i~~~Fp~~RG~a~Gi~~~~~g  165 (591)
T PTZ00207        103 LGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVV-TVLSVFPSNRGAVVAIMKTFTG  165 (591)
T ss_pred             HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhChhhhHHHHHHHHHHHH
Confidence            987 66665      68999999999999999888777755 55655  677775555444433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.63  E-value=6.5e-13  Score=118.89  Aligned_cols=271  Identities=16%  Similarity=0.164  Sum_probs=169.8

Q ss_pred             hhHHHHH-HHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhh----hhcchH-HHHHHHHHHHHHH-HHHhcch-----
Q 018113           56 QGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKR-ACVTYCLTYILSC-ITKHSPQ-----  123 (360)
Q Consensus        56 ~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~Grr~-~l~~~~~~~~~~~-l~~~~~~-----  123 (360)
                      ...++.. +.+..|+++..+|.++.+.-+.-++..|+.|.++|    |+||+| .++.+.+..++.+ ++..+++     
T Consensus        31 ~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~  110 (467)
T COG2211          31 VVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTG  110 (467)
T ss_pred             HHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCc
Confidence            3455444 44568999999999999999999999999999999    478754 5566667777755 5555552     


Q ss_pred             -HHHHHHHHHHHHhHhhhhhhhhhhHHhhh----ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-cCCCC
Q 018113          124 -YKILMIGRILGGIATSLLFSAFESWLVAE----HNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS-FSLGP  197 (360)
Q Consensus       124 -~~~l~~~r~l~G~~~~~~~~~~~~~~i~~----~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~-~~~~~  197 (360)
                       ....++.-.+.+++.......-.+ +.+|    .+||.+..++.+...+.+..    +...+.+++.....+. ..++|
T Consensus       111 k~~ya~vtY~l~~l~YT~vniPy~a-l~~~iT~d~~ER~~l~s~R~~~~~~g~~----l~~~~~~plv~~~g~~~~~~g~  185 (467)
T COG2211         111 KLIYALVTYMLLGLGYTLVNIPYGA-LGPEITQDPQERASLTSWRMVFASLGGL----LVAVLFPPLVKLFGGGDKALGY  185 (467)
T ss_pred             chHHHHHHHHHHHHHHHheeCchhh-cchhhcCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhCCCcchhhH
Confidence             345566677778777766444333 4333    48888877766666554433    3333333333333222 24566


Q ss_pred             chhhhhhHHHHHHHHHHHhhhhccccCCCCcchh-HHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccC
Q 018113          198 VAPFDAAACFLAIGMVIILSSWTENYGDPSESKD-LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP  276 (360)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (360)
                      +....+.+++..+..++.....+|+..+.++.++ ..++.++....+++||++........+. .............|.+
T Consensus       186 ~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~-~~~~~i~~s~~~yy~~  264 (467)
T COG2211         186 QGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLL-FIAFNIRGSIMVYYVT  264 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccchHHHHHHHHHHH-HHHHHHHhhhhheeEE
Confidence            6665666666666666665555555433332222 3444555566788999998877644443 3333334555555555


Q ss_pred             CCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhHhcc
Q 018113          277 NDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTI  334 (360)
Q Consensus       277 ~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  334 (360)
                      ...+.+.   .........+.+++.+...++.+|+|+|  +....+..+..+......+.+
T Consensus       265 y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk--~~~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         265 YVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK--KLFLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             EEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH--HHHHHHHHHHHHHHHHHHhhc
Confidence            5444443   3455556666777799999999999999  456666666666666555554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.61  E-value=2e-13  Score=120.88  Aligned_cols=270  Identities=15%  Similarity=0.114  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHh-hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHH--HH
Q 018113           40 NNYLLVYSLMMAGDWLQGPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL--SC  116 (360)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~--~~  116 (360)
                      |..-...+...+.-+...|+.|...++ .|+|.+|+|.++++..+...+.+|+.|.++||.|.||-++.......+  +.
T Consensus        10 ~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~p   89 (412)
T PF01306_consen   10 WWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGP   89 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence            344444444455555567887776664 899999999999999999999999999999999977765554433322  22


Q ss_pred             --HHHhc----chHH-HHHHHHHHHHhHhhhhhhhhhhHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018113          117 --ITKHS----PQYK-ILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL  188 (360)
Q Consensus       117 --l~~~~----~~~~-~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  188 (360)
                        ...+.    .|.+ ..+++-+..|+......|...+ ++.+. ++.+..-+..+..-    .+|.+++..+    ++.
T Consensus        90 ff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea-~~er~sr~~~feYG~~R~wG----Sig~ai~s~~----~G~  160 (412)
T PF01306_consen   90 FFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEA-YAERVSRRNGFEYGRARMWG----SIGFAIASLL----AGI  160 (412)
T ss_dssp             HHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHH-HHHHHHHHHSS-HHHHHHHH----HHHHHHHHHH----HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH-HHHHHHHHhcCCcchHHHHh----hHHHHHHHHH----hhe
Confidence              11222    2221 2222222233333333333333 33332 22233222222222    2333333344    443


Q ss_pred             hhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCC--CCcc--hhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHH
Q 018113          189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD--PSES--KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMY  264 (360)
Q Consensus       189 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (360)
                      +.+.   +....|++.....++..++.....|+++++  .+++  .+..+...++..+++|+|++|.+.+..........
T Consensus       161 L~~i---~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~  237 (412)
T PF01306_consen  161 LFNI---NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYD  237 (412)
T ss_dssp             HHHH---HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             eeee---CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence            3321   223556655544443333332222222111  1111  11111112345678999999998766555444433


Q ss_pred             HHHHhhhccccCCCCCcc------hhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 018113          265 TFVFLWTPALSPNDEEIP------HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSS  324 (360)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~  324 (360)
                      . .....|.|.....+..      .|...+...+.+++.-...+++.+|+|.|+  .+++...+..
T Consensus       238 v-fdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~--~Lllag~i~~  300 (412)
T PF01306_consen  238 V-FDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKN--LLLLAGVIMA  300 (412)
T ss_dssp             H-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHh--HHHHHHHHHH
Confidence            3 3333444443222211      156667777788888899999999999994  4444444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.61  E-value=7.8e-13  Score=115.64  Aligned_cols=284  Identities=18%  Similarity=0.202  Sum_probs=169.8

Q ss_pred             cccchhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHH
Q 018113           34 AFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC  109 (360)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~  109 (360)
                      +..++||.+++++.+..+.++++    ++...+..+-|| +....-+...++.+.+...+.++-|+.||+|-|....++.
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            35577898888888888888766    344555566678 6666668888888888888889999999999999999999


Q ss_pred             HHHHHHH-H--HHhc----chHH--HHHHHHHHHHhHhhhhhhhhhhHHhhhc----cccchhhHHHHHHHHHHHHHHHH
Q 018113          110 LTYILSC-I--TKHS----PQYK--ILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNG  176 (360)
Q Consensus       110 ~~~~~~~-l--~~~~----~~~~--~l~~~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~  176 (360)
                      .+.++|. +  .+..    ++++  ....+..+.+.++-...... + -+++.    ++|....    ..-..+..+|.+
T Consensus       117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lP-s-kiA~~WF~~~qra~A~----~~~v~~n~LGva  190 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLP-S-KIAAVWFPPDQRAIAT----VLGVMGNPLGVA  190 (480)
T ss_pred             HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccc-c-HHHHhhCCcchhhhhh----hHHHhcchHHHH
Confidence            9999976 2  2222    2334  55667777777665554432 2 34442    4454422    222223334444


Q ss_pred             HHHHHHhhhhhhhhcccCCCCch--hhhhhHHHHHHHHHHHhhhhccccCCCCcchhHH---HHHHHHHHHHhcchhHHH
Q 018113          177 LVAILSGLFGNLLVDSFSLGPVA--PFDAAACFLAIGMVIILSSWTENYGDPSESKDLL---TQFRGAAVAIASDEKIAL  251 (360)
Q Consensus       177 ~g~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  251 (360)
                      +|.++.|++.+.-.+..+..|..  .+.....+..+.+.......+++++.++......   .+..+..++.++|+++..
T Consensus       191 vg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~i  270 (480)
T KOG2563|consen  191 VGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFII  270 (480)
T ss_pred             HHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHH
Confidence            55555555444321111223322  3443433333333333222232222222111111   125567788999999999


Q ss_pred             HHHHHHHHHhhHHHHHHhhhc-cccCCCC-CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHH
Q 018113          252 LGAIQSLFEGSMYTFVFLWTP-ALSPNDE-EIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS  326 (360)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  326 (360)
                      ..++..+..+..+.. .+.+. .....++ +...|.......+++++++.+.|.+.||.++-+ .............
T Consensus       271 l~~~ygi~~g~F~~l-~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk-~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  271 LAICYGIGLGLFNSL-STLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK-LTTLVLYLFALVG  345 (480)
T ss_pred             HHHHHhhhHHHHHHH-HHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHH
Confidence            888887766665553 33333 2222222 245688888899999999999999999987754 3344444333333

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.61  E-value=6.9e-14  Score=119.31  Aligned_cols=109  Identities=22%  Similarity=0.311  Sum_probs=83.3

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhh
Q 018113           73 EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVA  151 (360)
Q Consensus        73 ~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~  151 (360)
                      -.|.+-+...+...+.++.+|.++||+|||+++..|....++.. +.+.+.|+..++++|++.|+..+.. ....+ +++
T Consensus        69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rA-iis  146 (451)
T KOG2615|consen   69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRA-IIS  146 (451)
T ss_pred             hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHH-HHH
Confidence            34677778888888999999999999999999999999999987 7799999977777899999998887 44435 888


Q ss_pred             hc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018113          152 EH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN  187 (360)
Q Consensus       152 ~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  187 (360)
                      |.   ++|+...+.....++    +|..+|+.+|+.+..
T Consensus       147 dV~sek~r~l~ms~v~~a~~----lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  147 DVVSEKYRPLGMSLVGTAFG----LGFILGPMIGGYLAQ  181 (451)
T ss_pred             hhcChhhccceeeeeehhhh----cchhhcchhhhHHHh
Confidence            86   677776665555555    333344444444443

>TIGR00788 fbt folate/biopterin transporter

Probab=99.57  E-value=2.2e-12  Score=119.20  Aligned_cols=257  Identities=15%  Similarity=0.038  Sum_probs=144.6

Q ss_pred             HHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhc-----chHHHHHHHHHHH-HHH-HHHhcchHHHH-HH
Q 018113           58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-----RKRACVTYCLTYI-LSC-ITKHSPQYKIL-MI  129 (360)
Q Consensus        58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~G-----rr~~l~~~~~~~~-~~~-l~~~~~~~~~l-~~  129 (360)
                      +..|.+.+++|+|+++++...+...+...+ .+++|+++||++     ||+.++++.++.+ ++. ..+..++.... ..
T Consensus        47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~  125 (468)
T TIGR00788        47 PLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAA  125 (468)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            336667778999999999888888875555 566999999998     7777777776653 333 33444554444 44


Q ss_pred             HHHHHHhHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHH
Q 018113          130 GRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF  207 (360)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  207 (360)
                      ..++.+++.+........ +..|.  ++++...+.....+. ....|.    .+++.+++.+.+..  +|+..|++.+.+
T Consensus       126 ~~~l~~~~~a~~dv~~da-~~~e~~~~~~~~~~~~~s~~~~-~~~~G~----~vg~~l~G~l~~~~--~~~~~f~~~a~l  197 (468)
T TIGR00788       126 FIFLAALAKALYDVLVDS-LYSERIRESPSAGPSLVSWMWG-ASATGG----LISSLLGGPLLDKT--LTRILFLITAAL  197 (468)
T ss_pred             HHHHHHHHHHHHHHhHHH-HHhhhhhcCCCcCCCeeeHHHH-HHHHHH----HHHHHHHHHHHHhc--CcchHHHHHHHH
Confidence            788999998888887766 76665  333222222222222 222344    44444555555443  466777777666


Q ss_pred             HHHHHHHHhhhhccccC--CCCcchh--------------HHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhh
Q 018113          208 LAIGMVIILSSWTENYG--DPSESKD--------------LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWT  271 (360)
Q Consensus       208 ~~~~~~~~~~~~~~~~~--~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (360)
                      .++..... ...+|+++  +++..++              ..++......+.+++|.++.......+........ ....
T Consensus       198 ~ll~~~~~-~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~-~~~~  275 (468)
T TIGR00788       198 LLLQLFVS-NLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGA-SGSV  275 (468)
T ss_pred             HHHHHHHH-HhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCC-Ccee
Confidence            65553322 45566431  1110000              01111123344567777776544444311111110 1001


Q ss_pred             ccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHH
Q 018113          272 PALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSL  327 (360)
Q Consensus       272 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  327 (360)
                      ..+.++..+.++   |......+++.+++....+++.+|++.|  +.+.....+.....
T Consensus       276 f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r--~~l~~~~~l~~~~~  332 (468)
T TIGR00788       276 FCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR--LLFGVTTLLYTLSS  332 (468)
T ss_pred             EEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH--HHHHHHHHHHHHHH
Confidence            112234455554   5666777888999999999999998877  44444444444433

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.57  E-value=2.5e-18  Score=158.91  Aligned_cols=243  Identities=21%  Similarity=0.270  Sum_probs=143.2

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcc---hHHHHHHHHHHHHhHhhhhhhhhhhH
Q 018113           73 EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP---QYKILMIGRILGGIATSLLFSAFESW  148 (360)
Q Consensus        73 ~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~  148 (360)
                      +.++..+..+++..+++++.|.++||+|||+.+..+.++..++. +.++++   +++.+.++|++.|++.|...+.. ..
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~-~~  125 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS-PI  125 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            45788889999999999999999999999999999999999987 778888   99999999999999999998887 44


Q ss_pred             Hhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc-CCCCchhhhhhHHHHHHHHHHHhhhhccc--
Q 018113          149 LVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF-SLGPVAPFDAAACFLAIGMVIILSSWTEN--  222 (360)
Q Consensus       149 ~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  222 (360)
                      ++.|.   ++|++.....+....    +|..++..++...    .+.. ++.||..+.......++..+.. ...||+  
T Consensus       126 ~~~E~~~~~~R~~~~~~~~~~~~----~G~~~~~~~~~~~----~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~  196 (451)
T PF00083_consen  126 YISEIAPPKHRGFLSSLFQLFWA----LGILLASLIGYIV----SYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPR  196 (451)
T ss_pred             ccccccccccccccccccccccc----ccccccccccccc----ccccccccccccccccccccccccccc-cccccccc
Confidence            88997   567664444433333    3332333333222    1112 2557776666555544333333 344543  


Q ss_pred             ----cCCCCcchhHHHHH-----------------H------HHHHHHhcchh----HHHHHHHHHHHHhhHHHHHHhhh
Q 018113          223 ----YGDPSESKDLLTQF-----------------R------GAAVAIASDEK----IALLGAIQSLFEGSMYTFVFLWT  271 (360)
Q Consensus       223 ----~~~~~~~~~~~~~~-----------------~------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  271 (360)
                          +++.+|+++..++.                 +      ..+++++++++    .........+.....+.....+.
T Consensus       197 wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~  276 (451)
T PF00083_consen  197 WLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYS  276 (451)
T ss_pred             eecccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence                22222222211110                 0      01223444432    22222222222222323334555


Q ss_pred             ccccCCCCCcchh-HHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 018113          272 PALSPNDEEIPHG-FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLL  328 (360)
Q Consensus       272 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  328 (360)
                      |.+.++. +.+.. .......+...++.++...+.||+|||+  ....+.....++..
T Consensus       277 ~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~--~~i~~~~~~~~~~~  331 (451)
T PF00083_consen  277 PSIFENA-GISNSFLATLILGLVNFLGTLLAIFLIDRFGRRK--LLIIGLLLMAICSL  331 (451)
T ss_pred             ccccccc-cccccccccccccccccccccccccccccccccc--cccccccccccccc
Confidence            5555443 33333 2223445566677778889999999994  44444444444433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11462 putative transporter; Provisional

Probab=99.57  E-value=7e-12  Score=115.81  Aligned_cols=244  Identities=16%  Similarity=0.217  Sum_probs=134.9

Q ss_pred             hHH-HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhh----hcchHHH-HHHHHHHHHHH-HHHhcch------
Q 018113           57 GPY-VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKRAC-VTYCLTYILSC-ITKHSPQ------  123 (360)
Q Consensus        57 ~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr----~Grr~~l-~~~~~~~~~~~-l~~~~~~------  123 (360)
                      ..+ ..++.+..|+++..+|.++...-+...+..|+.|.++||    +||||.. +++....+++. ++...|+      
T Consensus        29 ~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~  108 (460)
T PRK11462         29 MLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGK  108 (460)
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchH
Confidence            444 445556789999999999999999999999999999995    7986554 45666777766 4333332      


Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhHHhhh----ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-ccCCCCc
Q 018113          124 YKILMIGRILGGIATSLLFSAFESWLVAE----HNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD-SFSLGPV  198 (360)
Q Consensus       124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~----~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~-~~~~~~~  198 (360)
                      ...+.+.-++..++.......-.+ +.+|    .++|.+..+.......    +|..+++.+...+....-+ ....+|+
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~a-l~~~lt~d~~eRt~l~s~r~~~~~----iG~~~~~~~~~plv~~~g~~~~~~g~~  183 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCA-LGGVITNDPTQRISLQSWRFVLAT----AGGMLSTVLMMPLVNLIGGDNKPLGFQ  183 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHH-HHHHhcCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence            234455555566666655444433 4444    3777775555444433    3333333333222222111 0012333


Q ss_pred             hhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhh--HHHHHHhhhccccC
Q 018113          199 APFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGS--MYTFVFLWTPALSP  276 (360)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  276 (360)
                      ....+.+++..++........+|+.++++++.    +.++..+..++||+++.+.....+....  .......|...|..
T Consensus       184 ~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~~----~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~  259 (460)
T PRK11462        184 GGIAVLSVVAFMMLAFCFFTTKERVEAPPTTT----SMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWIL  259 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhcceeccCCCccCC----CHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhc
Confidence            33344444444444333233344322221111    2344556778888877664433332221  11112334444332


Q ss_pred             CCCCcch--hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          277 NDEEIPH--GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       277 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                         +.+.  +.......+..+++.+++++++||+++|+
T Consensus       260 ---g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~  294 (460)
T PRK11462        260 ---GTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT  294 (460)
T ss_pred             ---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence               2222  34555667788889999999999999885

>TIGR00889 2A0110 nucleoside transporter

Probab=99.53  E-value=1.9e-12  Score=118.21  Aligned_cols=161  Identities=14%  Similarity=0.175  Sum_probs=107.1

Q ss_pred             hHHHHHHHHhhCCCh--------hhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc-c---h
Q 018113           57 GPYVYYLYSTYGFGK--------GEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-P---Q  123 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~--------~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~-~---~  123 (360)
                      ..+.+...++.|.++        ++.+...+...+...++..+.|+++||+|||+++..+.+..+++. +.... +   +
T Consensus       228 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~  307 (418)
T TIGR00889       228 NIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFG  307 (418)
T ss_pred             HHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhh
Confidence            344566666776554        556888888888888888899999999999999999999888865 44442 2   2


Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccC----CC
Q 018113          124 YKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS----LG  196 (360)
Q Consensus       124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~----~~  196 (360)
                      .+.+++.+++.|++.+...+.... ++.|.   ++|+...+..       ......+|..++|.+++.+.++.+    ++
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~-~i~~~~p~~~~g~~~g~~-------~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~  379 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSV-FVEKEVPVHIRASAQGLF-------TLMCNGFGSLLGYILSGVMVEKMFAYGTFD  379 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHhccccCCc
Confidence            456677899999998887676644 77776   3444422222       112233555666666666665543    56


Q ss_pred             CchhhhhhHHHHHHHHHHHhhhhccccCC
Q 018113          197 PVAPFDAAACFLAIGMVIILSSWTENYGD  225 (360)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (360)
                      |+..|...+.+.++..+......+|++++
T Consensus       380 ~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       380 WQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            77777777666666666555666665443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.49  E-value=1.5e-12  Score=113.80  Aligned_cols=194  Identities=12%  Similarity=0.042  Sum_probs=120.2

Q ss_pred             hcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc---
Q 018113          120 HSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF---  193 (360)
Q Consensus       120 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~---  193 (360)
                      ..++++.++++-++.|.|.+...+..++ ++++.   +++.+..+..+..++        +|..++|.+++.+....   
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~-~v~~~~~~~~~~~~l~~~~~~~~--------~G~~~gP~i~~~~i~~~~~~   76 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANP-YVSILGPIETAASRLALTQAFNK--------LGTTVAPLFGGSLILSGAGD   76 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHH-HHHHHCCcchHHHHHHHHHHHhh--------hHHHHHHHHHHHHHhcCCcc
Confidence            4578999999999999999999999988 87765   445555555555544        55555555555444211   


Q ss_pred             -----------CCCCchhhhhhHHHHHHHH-HHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHh
Q 018113          194 -----------SLGPVAPFDAAACFLAIGM-VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEG  261 (360)
Q Consensus       194 -----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (360)
                                 .++|+.+|++.+.+..+.. .+.....||.+++++++.+..++  ...++.+++|+.+...+..++..+
T Consensus        77 ~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~f~yvg  154 (310)
T TIGR01272        77 LSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDT--TQKTSAFQFTHLVLGALGIFVYVG  154 (310)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccc--cchhhHHhhHHHHHHHHHHHHHHH
Confidence                       1467788875544433333 33223445433322221111110  112345677777776555555554


Q ss_pred             hHHHHHHhhhccccCCC--CCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHH
Q 018113          262 SMYTFVFLWTPALSPND--EEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSL  327 (360)
Q Consensus       262 ~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  327 (360)
                      .... ...|.+.|+++.  .+.++   +...+.+..+.++|+++.+++.||+++|+  .+..+.....+..
T Consensus       155 ~e~~-~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~--~l~~~~~l~~~~~  222 (310)
T TIGR01272       155 AEVS-AGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR--YLAFNAFLAVLLS  222 (310)
T ss_pred             HHHH-HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH--HHHHHHHHHHHHH
Confidence            5555 688999998643  45554   56677888899999999999999999874  4444444444433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.49  E-value=8.6e-11  Score=107.87  Aligned_cols=138  Identities=20%  Similarity=0.181  Sum_probs=91.9

Q ss_pred             HHHHH-HHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhh-cchHHHHHHHHHHHHHH-HHHhcc-hHHHHHHHHHH
Q 018113           58 PYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-ITKHSP-QYKILMIGRIL  133 (360)
Q Consensus        58 ~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~-l~~~~~-~~~~l~~~r~l  133 (360)
                      .++|. +.+++|+++.+.+.+.........+..+++|+++||+ ||||+++.+.++.+++. +.+..+ +...+.++..+
T Consensus        30 ~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~l  109 (493)
T PRK15462         30 ALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAI  109 (493)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence            44444 4567899999999998888888888888999999999 99999999999988876 544432 22334444444


Q ss_pred             HHhHhhhhhhhhhhHHhhhc--c---ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHH
Q 018113          134 GGIATSLLFSAFESWLVAEH--N---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAAC  206 (360)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~~~--~---~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~  206 (360)
                      .+++.|...+...+ +++|.  +   +|+.       .++..+..++ +|..++|.+.+++.+..+  |+..|.+.+.
T Consensus       110 i~iG~G~~~~~~~a-lv~elfp~~~~~R~s-------gf~i~Y~~~n-lG~~iap~l~g~L~~~~G--w~~~F~iaai  176 (493)
T PRK15462        110 IVCGYGLFKSNVSC-LLGELYEPTDPRRDG-------GFSLMYAAGN-VGSIIAPIACGYAQEEYS--WAMGFGLAAV  176 (493)
T ss_pred             HHHhcccccccHHH-HHHHHCCCCCccccc-------eehHHHHHHH-HHHHHHHHHHHHHHhhhC--hHHHHHHHHH
Confidence            45556665555534 77775  2   2433       2333334344 667777777777766544  5566665543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.48  E-value=1.3e-10  Score=106.83  Aligned_cols=246  Identities=13%  Similarity=0.092  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHH-HH-HHHh-cchHH-HHHHHHHHHHhHhhhhhhhhhhHHh
Q 018113           75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-ITKH-SPQYK-ILMIGRILGGIATSLLFSAFESWLV  150 (360)
Q Consensus        75 g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~-~~-l~~~-~~~~~-~l~~~r~l~G~~~~~~~~~~~~~~i  150 (360)
                      +...++..+...+..|+.|.++|+-|+||.++......++ +. +..+ .++.+ ...+.-++.-++.+.......+ ++
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna-~L  151 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA-YL  151 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence            5667778888889999999999999987777766555544 44 4444 34433 3333334443444444333333 55


Q ss_pred             hhc---cccc--hh-----------------hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---cc---cCCCCchhhh
Q 018113          151 AEH---NKRG--FE-----------------QQWLSITFSKAIFLGNGLVAILSGLFGNLLV---DS---FSLGPVAPFD  202 (360)
Q Consensus       151 ~~~---~~r~--~~-----------------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~---~~---~~~~~~~~~~  202 (360)
                      .|.   +++-  ..                 ........+.+...|+ +|.++.-.+.-.+.   +.   ..+..|..+.
T Consensus       152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy-~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGY-IGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHH-HHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            443   2220  00                 0000113333444444 33333322222211   11   1234466666


Q ss_pred             hhHHHHHHHHHHHhhhhccccC-CCCc-ch----hHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccC
Q 018113          203 AAACFLAIGMVIILSSWTENYG-DPSE-SK----DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP  276 (360)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (360)
                      ..+...++..+......|+.++ +..+ .+    ...++..+..+++.|+|....+.+...+...+... +......|..
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~t-i~~~~~i~a~  309 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNT-IISFAGIYAT  309 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            6665555555544445555443 1111 11    22455666777888889988887777777766666 5777778888


Q ss_pred             CCCCcchh---HHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 018113          277 NDEEIPHG---FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVS  323 (360)
Q Consensus       277 ~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~  323 (360)
                      +..+.+..   .......+.+++|+++.+++.||+|.|+.+.+.......
T Consensus       310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            88888774   344566888999999999999999998433444444333

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.42  E-value=5.1e-11  Score=108.17  Aligned_cols=147  Identities=12%  Similarity=0.056  Sum_probs=95.2

Q ss_pred             HHHHH-HHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           58 PYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        58 ~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      ...|. +.+++|.++.+.+.+.+...+...++.++.|+++||+|||+.+..+.....+.. .....++.+.++..+++.+
T Consensus       237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  316 (393)
T PRK15011        237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA  316 (393)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34554 446789999999988777777677778899999999999998877766555444 3445677777788888888


Q ss_pred             hHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV  213 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  213 (360)
                      ++.+...+.... +..|.  ++|+...+....    ...    +|..+++.+++.+.+..  +|+..+.....+.++..+
T Consensus       317 ~~~g~~~~~~~~-~~~~~~p~~~g~~~~~~~~----~~~----lg~~~g~~l~G~i~~~~--g~~~~~~~~~~~~~~~~~  385 (393)
T PRK15011        317 IYIGILGGIGML-YFQDLMPGQAGSATTLYTN----TSR----VGWIIAGSLAGIVAEIW--NYHAVFWFALVMIIATLF  385 (393)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCcchHHHHHHH----HHH----HHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHH
Confidence            877766555433 55664  445553333222    223    44455555555555543  455667666666655555


Q ss_pred             HH
Q 018113          214 II  215 (360)
Q Consensus       214 ~~  215 (360)
                      ..
T Consensus       386 ~~  387 (393)
T PRK15011        386 CL  387 (393)
T ss_pred             HH
Confidence            44

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.42  E-value=3.8e-11  Score=107.91  Aligned_cols=187  Identities=19%  Similarity=0.131  Sum_probs=126.2

Q ss_pred             ccccchhHHHHHHHHHHHHHhhhhh----HH-HHHHHH-hhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcc-hHHH
Q 018113           33 SAFNSFKNNYLLVYSLMMAGDWLQG----PY-VYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR-KRAC  105 (360)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr-r~~l  105 (360)
                      .+.++.+|+.+.++.+..+....+.    +- -|++.+ |.+-+.+..|++.++..++..+.++.+|....|.++ |+.+
T Consensus        26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl  105 (488)
T KOG2325|consen   26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL  105 (488)
T ss_pred             ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH
Confidence            3445667787777777777776662    22 444444 577788888999999999999999999999999996 7778


Q ss_pred             HHHHHHHHHHH-HH---Hh-cc-hHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHH
Q 018113          106 VTYCLTYILSC-IT---KH-SP-QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNG  176 (360)
Q Consensus       106 ~~~~~~~~~~~-l~---~~-~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~  176 (360)
                      +.+.++..++. +-   .. .+ ..+.++++|++.|+|.+.. ..... |+++.   ++|.+..+.    .+.+..+|..
T Consensus       106 i~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~-Y~a~~s~~~dR~rA~a~----~~~~~vlg~i  179 (488)
T KOG2325|consen  106 IVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRA-YIADASTVEDRPRAFAA----TSGGFVLGII  179 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHH-HHHhccCccchHHHHHH----hhhHHHHHHH
Confidence            88888888876 32   22 33 5678899999999998776 45545 87774   666664333    3334455555


Q ss_pred             HHHHHHhhhhhhhhcc------cCCC-CchhhhhhHHHHHHHHHHHhhhhccccCC
Q 018113          177 LVAILSGLFGNLLVDS------FSLG-PVAPFDAAACFLAIGMVIILSSWTENYGD  225 (360)
Q Consensus       177 ~g~~~~~~l~~~l~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (360)
                      +|+.+++.+++...+.      ..|+ +..+-++.+.+.++..+++....+|.+.+
T Consensus       180 lGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  180 LGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG  235 (488)
T ss_pred             HhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence            6666665555543211      1111 24556777777777777776666665443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.37  E-value=3.7e-11  Score=110.11  Aligned_cols=143  Identities=13%  Similarity=0.039  Sum_probs=99.1

Q ss_pred             HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhh
Q 018113           65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFS  143 (360)
Q Consensus        65 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~  143 (360)
                      ++.+.+..+.|.+.+...+...++.++.|++.||+|||+.+..+.++.+++. +.+++++.+.+...+++.|++.+...+
T Consensus       255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~  334 (420)
T PRK09528        255 ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLV  334 (420)
T ss_pred             hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            3446677788888888888778888899999999999999999888888876 667788888888999999988877656


Q ss_pred             hhhhHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHH
Q 018113          144 AFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII  215 (360)
Q Consensus       144 ~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (360)
                      .... ++.|. ++|.+..     .+..+.+.+..+|..+++.+.+++.|..|  |+..|...+.+.++...+.
T Consensus       335 ~~~~-~~~~~~~~~~~a~-----~~~~~~~~~~~lg~~ig~~~~G~l~~~~G--~~~~f~~~~~~~~i~~~~~  399 (420)
T PRK09528        335 GVFK-YITLNFDVRLSAT-----IYLVGFQFAKQLGAVFLSTLAGNLYDSIG--FQGTYLILGGIVLLFTLIS  399 (420)
T ss_pred             HHHH-HHHHHcCccceee-----eeeehHHHHHHHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHHHH
Confidence            5544 66654 2221110     11111223344667777777777777655  5566766655555444443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.36  E-value=1.9e-10  Score=107.43  Aligned_cols=157  Identities=15%  Similarity=0.137  Sum_probs=93.1

Q ss_pred             hHHHHHHH-HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHH-HH-H--HhcchHHHHHHHH
Q 018113           57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS-CI-T--KHSPQYKILMIGR  131 (360)
Q Consensus        57 ~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~-~l-~--~~~~~~~~l~~~r  131 (360)
                      ..++|.+. +++|.+..+.+.......++..++.+..|+++||+|||+++..+.+...++ .. .  ..+++...+.+++
T Consensus       270 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (490)
T PRK10642        270 LTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGL  349 (490)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            34566665 567998887777777777777788889999999999999988877654432 21 2  2345677778889


Q ss_pred             HHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHH
Q 018113          132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL  208 (360)
Q Consensus       132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  208 (360)
                      ++.|++.+...... ..++.|.   +.|+...       +...+++. +++.++|.+.+++.+..+ +|+.++.......
T Consensus       350 ~~~g~~~~~~~g~~-~~~~~~~~p~~~Rg~~~-------g~~~~~~~-~~g~~~p~i~g~l~~~~~-~~~~~~~~~~~~~  419 (490)
T PRK10642        350 LMLAVILNCFTGVM-ASTLPAMFPTHIRYSAL-------AAAFNISV-LVAGLTPTLAAWLVESTQ-NLMMPAYYLMVVA  419 (490)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHCCCccchHHH-------HHHHHHHH-HHHHHHHHHHHHHHHHhC-CchHHHHHHHHHH
Confidence            88888766554444 3355554   4555422       22233333 223445555555554322 3444444433333


Q ss_pred             HHHHHHHhhhhccccC
Q 018113          209 AIGMVIILSSWTENYG  224 (360)
Q Consensus       209 ~~~~~~~~~~~~~~~~  224 (360)
                      ++..+.. ...||+++
T Consensus       420 ~i~~~~~-~~~pes~~  434 (490)
T PRK10642        420 VIGLITG-VTMKETAN  434 (490)
T ss_pred             HHHHHHH-HHhccccC
Confidence            3333333 34466544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.36  E-value=2.8e-10  Score=102.90  Aligned_cols=150  Identities=11%  Similarity=0.109  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHH
Q 018113           56 QGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG  134 (360)
Q Consensus        56 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~  134 (360)
                      ..++.|...+|+|.++.+.|.+.....+...+...+.|++.||+|+|+.+..+.+...+.. +.+++++.+.++..+++.
T Consensus       224 ~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~  303 (382)
T TIGR00902       224 YYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILH  303 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Confidence            3456677778899999999999888888788888899999999999999999999998887 678899999999999999


Q ss_pred             HhHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHH
Q 018113          135 GIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVI  214 (360)
Q Consensus       135 G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  214 (360)
                      |+..+...+.... ++.+. ++... +..++.+   ...+.++|..+++.+++++.|+.+  . ..|...+.+.++..++
T Consensus       304 g~~~~~~~~~~~~-~i~~~-~~~~~-~~~q~~~---~~~~~g~g~~~g~~~~G~l~~~~g--~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       304 CGTFAVCHLAAMR-YIAAQ-PGSEI-AKLQALY---NALAMGGLIAIFTAFAGFIYPTLG--A-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHH-HHHhC-CHhhH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcc--H-HHHHHHHHHHHHHHHH
Confidence            9999999888755 77765 22121 1122222   233455667777777777777654  2 3455555555544433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.34  E-value=3.3e-10  Score=102.11  Aligned_cols=143  Identities=15%  Similarity=0.193  Sum_probs=94.5

Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhh
Q 018113           62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSL  140 (360)
Q Consensus        62 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~  140 (360)
                      .+.+++|.++.+.+...........++.++.|++.||+|||+++..+.+...+.. ...+.++.+.+...+++.|++.+.
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456789999999988777666666777789999999999999888776655544 445567777788888999998887


Q ss_pred             hhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHH
Q 018113          141 LFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII  215 (360)
Q Consensus       141 ~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (360)
                      ..+.... ++.|.  ++++.    ..+..+....    +|..+++.+.+.+.+..+  |+..+...+.+.++..+..
T Consensus       305 ~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~----~g~~~g~~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       305 LAGIGML-YFQDLMPGRAGA----ATTLYTNTGR----VGWIIAGSVGGILAERWS--YHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHH-HHHHhCcchhhH----HHHHHHHHHH----HHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHH
Confidence            7666544 66665  33332    2222222222    555666666666555544  5566666666555555444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.34  E-value=3.3e-10  Score=103.11  Aligned_cols=146  Identities=21%  Similarity=0.260  Sum_probs=93.6

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      .+++|...++.|.+  +.+...+...++..++.++.|++.||+|||+.+..+....+++. +..+.++.+.+++..++.|
T Consensus       236 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  313 (399)
T PRK05122        236 ATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG  313 (399)
T ss_pred             HHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34556666666663  34555555556666777889999999999999988888777776 5566778888888899999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      ++.+..++.... ...|.   ++|++..+.    ++....    +|..+++.+.+.+.+..  +|+..+...+.+.++..
T Consensus       314 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~----~~~~~~----~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~  382 (399)
T PRK05122        314 FGFSLVFPALGV-EAVKRVPPQNRGAALGA----YSVFLD----LSLGITGPLAGLVASWF--GYPSIFLAAALAALLGL  382 (399)
T ss_pred             HhHHHHHHHHHH-HHHHhCCHHHHHHHHHH----HHHHHH----HHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHH
Confidence            999887776544 44443   445553332    222223    34444444555555544  45566666666555555


Q ss_pred             HHH
Q 018113          213 VII  215 (360)
Q Consensus       213 ~~~  215 (360)
                      ...
T Consensus       383 ~~~  385 (399)
T PRK05122        383 ALT  385 (399)
T ss_pred             HHH
Confidence            444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.33  E-value=6.6e-10  Score=100.50  Aligned_cols=146  Identities=18%  Similarity=0.143  Sum_probs=95.2

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGI  136 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~  136 (360)
                      ..++|.+.++.|.++++.|...+...+...+++.+.|++.||+|+|+++..+.....++.+... + ........++.|+
T Consensus       220 ~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~l~g~  297 (381)
T PRK03633        220 YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-S-QAAMAPALFILGA  297 (381)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHH
Confidence            3457777888899999999888888888888888999999999999999888777776552222 2 2233456677787


Q ss_pred             HhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          137 ATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       137 ~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      +.....|.... .+.|..++++..+ ...    ....+..+|..++|.+++++.|+.++  +..|...+.+.++..
T Consensus       298 ~~~~~~p~~~~-~~~~~~~~~~~~~-~~~----~~~~~~~lG~~igp~~~G~l~~~~g~--~~~f~~~~~~~l~~~  365 (381)
T PRK03633        298 AGFTLYPVAMA-WACEKVEHHELVA-MNQ----ALLLSYTVGSLLGPSFTAMLMQNYSD--NLLFIMIASVSFIYL  365 (381)
T ss_pred             HHHhHHHHHHH-HHHccCCHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHH
Confidence            76666677655 5566422212111 111    11234446667777777777776554  455665555554443

>PRK09952 shikimate transporter; Provisional

Probab=99.32  E-value=4.4e-10  Score=103.51  Aligned_cols=150  Identities=16%  Similarity=0.070  Sum_probs=92.4

Q ss_pred             HHHHH-HHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HH--Hh-c-chHHHHHHHH
Q 018113           58 PYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT--KH-S-PQYKILMIGR  131 (360)
Q Consensus        58 ~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~--~~-~-~~~~~l~~~r  131 (360)
                      .+.|. +.+++|.+..+...+.......+.++.++.|+++||+|||+++..+.++..++. ..  .. . ++...+....
T Consensus       271 ~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (438)
T PRK09952        271 AFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSI  350 (438)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            44444 456788888765555444455566777789999999999999888876655543 22  11 2 2344444556


Q ss_pred             HHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHH
Q 018113          132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL  208 (360)
Q Consensus       132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  208 (360)
                      ++.+++.+...+...+ +++|.   +.|+.       ..+..+.++..+++.++|.+.+++.+..+.+|..++.......
T Consensus       351 ~l~~~~~~~~~~~~~~-~~~e~~p~~~r~t-------g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~  422 (438)
T PRK09952        351 MLANIAHDMVVCVQQP-MFTEMFGASYRYS-------GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGC  422 (438)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHCCcchhHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            6667777766665534 77775   22322       3344445566667777888888877654445666665555555


Q ss_pred             HHHHHHH
Q 018113          209 AIGMVII  215 (360)
Q Consensus       209 ~~~~~~~  215 (360)
                      ++..+..
T Consensus       423 ~i~~v~~  429 (438)
T PRK09952        423 LISAMTA  429 (438)
T ss_pred             HHHHHHH
Confidence            5544444

>PRK03545 putative arabinose transporter; Provisional

Probab=99.32  E-value=5.4e-10  Score=101.40  Aligned_cols=143  Identities=15%  Similarity=0.086  Sum_probs=91.3

Q ss_pred             HHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH--HHHhcchHHHHHHHHHHHHhHh
Q 018113           61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--ITKHSPQYKILMIGRILGGIAT  138 (360)
Q Consensus        61 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~--l~~~~~~~~~l~~~r~l~G~~~  138 (360)
                      |.+.+++|.|..+.+...+...+++.++..+.|+++||+|||+.. .+..+...+.  +....++.+.+.++.++.|++.
T Consensus       230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~  308 (390)
T PRK03545        230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI  308 (390)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            344556899999999988888888888899999999999988754 4444444433  3345677788888889999987


Q ss_pred             hhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHH
Q 018113          139 SLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII  215 (360)
Q Consensus       139 ~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (360)
                      +...+.... .+.|.  ++|++..+    .++....+|.    .+++.+++.+.++  ++++..+...+.+.++.....
T Consensus       309 ~~~~~~~~~-~~~~~~~~~~~~~~g----~~~~~~~~g~----~~G~~~~G~~~~~--~g~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        309 MCIGLAMQV-KVLKLAPDATDVAMA----LFSGIFNIGI----GAGALLGNQVSLH--LGLSSIGYVGAALALAALVWS  376 (390)
T ss_pred             hcchHHHHH-HHHHhCCCcHHHHHH----HHHHHHHHHH----HHHHHHHHHHHhc--cChhHHHHHHHHHHHHHHHHH
Confidence            666554433 45443  34444222    2332333344    4455555555555  445566777666666555554

>PRK03699 putative transporter; Provisional

Probab=99.32  E-value=4.7e-10  Score=101.89  Aligned_cols=144  Identities=13%  Similarity=0.060  Sum_probs=97.9

Q ss_pred             hHHHHHHH-HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHH
Q 018113           57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG  134 (360)
Q Consensus        57 ~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~  134 (360)
                      ..+.|.+. +++|+|..+.+.+.+...++..++.+..|+++||+|||+.+.....+..+.. +....++.+.+.+..++.
T Consensus       225 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (394)
T PRK03699        225 ISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGL  304 (394)
T ss_pred             HHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            34566666 5689999999999888888888898999999999999999888777666655 445667777777777888


Q ss_pred             HhHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHH
Q 018113          135 GIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG  211 (360)
Q Consensus       135 G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  211 (360)
                      |++.+..++.... +..|.  ++++..       .+.... ...+|..++|.+.+.+.+..++  +..++....+..+.
T Consensus       305 G~~~~~~~~~~~~-~~~~~~~~~~~~~-------~g~~~~-~~~~g~~i~p~~~G~l~~~~g~--~~~~~~~~~~~~~~  372 (394)
T PRK03699        305 GFFSSAIYTTIIT-LGSQQTKVASPKL-------VNFILT-CGTIGTMLTFVVTSPIVAHFGL--QAALLTANGLYAVV  372 (394)
T ss_pred             HHHHHHHHHHHHH-HHHHHccCCCHHH-------HHHHHH-hhhHHHHHHHHHHHHHHHHhCc--hhhhhhhHHHHHHH
Confidence            8887777666544 54443  222221       111222 2236777777777777776554  45565554444444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.31  E-value=7e-10  Score=97.63  Aligned_cols=203  Identities=22%  Similarity=0.201  Sum_probs=122.4

Q ss_pred             chhHHHHHHHHHHHHHHHhh---hccc-cccCCCc-c-------cccchh-HHHHHHHHHHHHHhhhhhHH-HHHHHHhh
Q 018113            2 EMFFYLVFGALGAVVAALEL---SKTN-KDRINTS-S-------AFNSFK-NNYLLVYSLMMAGDWLQGPY-VYYLYSTY   67 (360)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~-~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   67 (360)
                      .++||.+|.....+.+....   +.-+ ++.++++ .       ..++.+ +..+....+.........+| -|.+.+..
T Consensus       163 ~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~  242 (394)
T COG2814         163 LFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVA  242 (394)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHcc
Confidence            57899988877766555442   2222 1111111 1       112222 22233333333333333466 66777789


Q ss_pred             CCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH--HHHhcchHHHHHHHHHHHHhHhhhhhhhh
Q 018113           68 GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--ITKHSPQYKILMIGRILGGIATSLLFSAF  145 (360)
Q Consensus        68 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~--l~~~~~~~~~l~~~r~l~G~~~~~~~~~~  145 (360)
                      |.|.++++++...+.+++.+++...|+++|| +.|+.+.....+.++..  +....++.+..+..-++.|++........
T Consensus       243 g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~  321 (394)
T COG2814         243 GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGL  321 (394)
T ss_pred             CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHH
Confidence            9999999999999999999999999999999 99999888878777765  44556666666777777777666553333


Q ss_pred             hhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHh
Q 018113          146 ESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL  216 (360)
Q Consensus       146 ~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (360)
                      .. -+++.  +.++...+    .+....++|..+|..+++.+    .|+  +++....+..+.+.+++..+..
T Consensus       322 ~~-~~a~~~p~~~~~a~s----l~~aa~nlgia~GA~lGG~v----~~~--~g~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         322 QT-RLARLAPDAADLAGS----LNVAAFNLGIALGAALGGLV----LDA--LGYAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             HH-HhcccCCCchHHHHH----HHHHHHHHHHHHHHHHHHHH----HHh--hchHHHHHHHHHHHHHHHHHHH
Confidence            22 33432  34444444    44444445554555555443    344  4555667777777666666653

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.31  E-value=2.7e-10  Score=102.55  Aligned_cols=142  Identities=15%  Similarity=0.090  Sum_probs=95.6

Q ss_pred             HHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchH--HHHHHHHHHH
Q 018113           58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQY--KILMIGRILG  134 (360)
Q Consensus        58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~--~~l~~~r~l~  134 (360)
                      .+.+++.+++|.++.+.+...+...+...++.++.|++.||+|||+.+..+.....++. +..+.++.  ..+....++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (377)
T TIGR00890       226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV  305 (377)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence            34555668899999888988888888888899999999999999999998888887776 45555532  3344567778


Q ss_pred             HhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHH
Q 018113          135 GIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI  210 (360)
Q Consensus       135 G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  210 (360)
                      |++.+...+.... ++.|.   ++|+...+....        ...+|..+++.+.+.+.+..+  |+..+...+.+.++
T Consensus       306 g~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~--------~~~~g~~~~~~~~g~l~~~~g--~~~~f~~~~~~~~~  373 (377)
T TIGR00890       306 FFTWGGTISLFPS-LVSDIFGPANSAANYGFLYT--------AKAVAGIFGGLIASHALTEIG--FEYTFIVTGAFALT  373 (377)
T ss_pred             HHHhccchhccHH-HHHHHhhhhhhhhHhHHHHH--------HHHHHHHHHHHHHHHHHhhhc--hhhHHHHHHHHHHH
Confidence            8877776655433 66664   555553333222        223555666666666666544  44566665554443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.31  E-value=7.9e-10  Score=100.36  Aligned_cols=157  Identities=15%  Similarity=0.091  Sum_probs=98.1

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHH-hcchHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK-HSPQYKILMIGRILG  134 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~-~~~~~~~l~~~r~l~  134 (360)
                      ..+.|.+.+++|.+..+.|...+...++..++.+..|++.||+|||+.+..+..+..++. +.. ..++...+.  -++.
T Consensus       225 ~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~  302 (393)
T PRK09705        225 IAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVC  302 (393)
T ss_pred             HHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHH
Confidence            345777778899999999999998888889999999999999999999988877766665 333 233332222  2456


Q ss_pred             HhHhhhhhhhhhhHHhhhc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHH
Q 018113          135 GIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI  210 (360)
Q Consensus       135 G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  210 (360)
                      |++.+...+.... ...+.    ++|+.       ..+.....++ ++..++|.+.+++.|..| .+...+.+.....++
T Consensus       303 g~g~g~~~~~~~~-~~~~~~~~~~~~g~-------~~g~~~~~~~-~~~~~gp~~~G~l~~~~g-~~~~~~~~~~~~~~~  372 (393)
T PRK09705        303 GLGLGGAFPLCLL-LALDHSVQPAIAGK-------LVAFMQGIGF-IIAGLAPWFSGVLRSISG-NYLMDWAFHALCVVG  372 (393)
T ss_pred             HHhccchHHHHHH-HHHhhcCCHHHHHH-------HHHHHHHHHH-HHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence            7777777665533 33333    22333       2222233333 455666777777776544 244556555555554


Q ss_pred             HHHHHhhhhccccCC
Q 018113          211 GMVIILSSWTENYGD  225 (360)
Q Consensus       211 ~~~~~~~~~~~~~~~  225 (360)
                      .........||++++
T Consensus       373 ~~~~~~~~~~~~~~~  387 (393)
T PRK09705        373 LMIITLRFAPARFPQ  387 (393)
T ss_pred             HHHHHHHhccccccc
Confidence            444443445555443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.31  E-value=5.7e-10  Score=101.82  Aligned_cols=148  Identities=18%  Similarity=0.133  Sum_probs=95.8

Q ss_pred             hHHHHHHHHhhCCChhh----hHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGE----IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGR  131 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~----~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r  131 (360)
                      .+..+...++.+.+..+    .+.+.+...++..+..+..|+++||+|||+.+..+.....++. ...+.++.+.+.+.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (408)
T PRK09874        239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILR  318 (408)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            45555555554433333    2444455556667777889999999999999998887777665 556667888888899


Q ss_pred             HHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHH
Q 018113          132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL  208 (360)
Q Consensus       132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  208 (360)
                      ++.|++.+...+.... .+.+.   ++|++..+.....    ..    +|..++|.+++.+.+..  +|+..|.+.+.+.
T Consensus       319 ~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~----~~----~g~~~gp~~~G~l~~~~--g~~~~f~~~~~~~  387 (408)
T PRK09874        319 FLLGAADGALLPAVQT-LLVYNSSNQIAGRIFSYNQSF----RD----IGNVTGPLMGAAISANY--GFRAVFLVTAGVV  387 (408)
T ss_pred             HHHHhhhHhhHHHHHH-HHHHhCCcccceeeehHHHHH----HH----HHHHhhHHHHHHHHhhc--chhHHHHHHHHHH
Confidence            9999999888777644 44443   4456644433332    22    44455555555555543  4556777777666


Q ss_pred             HHHHHHH
Q 018113          209 AIGMVII  215 (360)
Q Consensus       209 ~~~~~~~  215 (360)
                      ++..+..
T Consensus       388 l~~~~~~  394 (408)
T PRK09874        388 LFNAVYS  394 (408)
T ss_pred             HHHHHHH
Confidence            6655555

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.30  E-value=9.5e-10  Score=98.17  Aligned_cols=154  Identities=25%  Similarity=0.255  Sum_probs=107.0

Q ss_pred             hhhhHHHHHHHHhhC----CChhhhHHHHHHHHHHHhhhhhhhhhhhhhh-cchHHHHHHHHHHHHHH-HHHhc--chHH
Q 018113           54 WLQGPYVYYLYSTYG----FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-ITKHS--PQYK  125 (360)
Q Consensus        54 ~~~~~~~~~~~~~~g----~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~-l~~~~--~~~~  125 (360)
                      ++..++..+++.+++    +|+++...+++.+..-..+...++|+++||+ |+|++++.+.++..+|. +.+.+  .+..
T Consensus        39 GmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~  118 (498)
T COG3104          39 GMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPG  118 (498)
T ss_pred             hhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccccc
Confidence            334677778888887    9999998888888777788888999999996 99999999999999998 55665  4688


Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhh
Q 018113          126 ILMIGRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDA  203 (360)
Q Consensus       126 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~  203 (360)
                      .+.++-.+.++|.|..=+...+ +++|.  +++.++-+-. ..+..+.+    +|+.++|.+.+++.+..+  |...|..
T Consensus       119 gl~i~L~~I~iG~Gl~K~NiS~-llg~ly~~~DprrD~gF-t~fY~~iN----iGsl~~p~i~~~~~~~~g--~~~gF~~  190 (498)
T COG3104         119 GLYIGLALIIVGTGLFKPNISS-LLGELYPKDDPRRDGGF-TLFYMGIN----IGSLIAPIITGLLAINYG--WHVGFGL  190 (498)
T ss_pred             HHHHHHHHHHhccccccccHHH-HHHHhcCCCCcccCCCc-cEEEEEee----hHHHHHHHHHHHHHHhhC--HHHHHHH
Confidence            8999999999999999887745 88775  1111111111 11222333    555666666666655555  4466766


Q ss_pred             hHHHHHHHHHHH
Q 018113          204 AACFLAIGMVII  215 (360)
Q Consensus       204 ~~~~~~~~~~~~  215 (360)
                      .++-....++..
T Consensus       191 aavGm~~gl~~f  202 (498)
T COG3104         191 AAVGMIIGLVIF  202 (498)
T ss_pred             HHHHHHHHHHHH
Confidence            655554444443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.29  E-value=9.5e-10  Score=99.49  Aligned_cols=149  Identities=12%  Similarity=0.090  Sum_probs=103.5

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      ..+.|...+|.|.+..+.|...+...+...+...+.|++.||+|+|+.+..+.+..+++. +.+..++.+.+++..++.|
T Consensus       225 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  304 (382)
T PRK11128        225 YGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHC  304 (382)
T ss_pred             HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            344556667899999999999888888777888899999999999999999888888776 6677889998899999999


Q ss_pred             hHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVI  214 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  214 (360)
                      ++.+...+.... ++.+.+ +++...    ..+.....++.+|..+++.+++.+.|..++   ..++..+.+.++....
T Consensus       305 ~~~~~~~~~~~~-~~~~~~-~~~~~~----~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~---~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        305 GTFTVCHLAAMR-YIAARP-GSEVIR----LQALYSALAMGGSIAIMTVLSGFLYQHLGA---GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHH-HHHHCC-HhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHH
Confidence            998887776655 655542 112111    222222233445666777777777776543   3455555554444433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.29  E-value=9.3e-10  Score=100.77  Aligned_cols=155  Identities=18%  Similarity=0.093  Sum_probs=99.2

Q ss_pred             HHHHHHHHh-hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           58 PYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        58 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      .+.|.+.++ +|.++.+.|.+.+...++..+++++.+++.||.++|+.+..+.+..+++. +..+.++.....++.++.|
T Consensus       244 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  323 (417)
T PRK10489        244 VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFG  323 (417)
T ss_pred             HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence            346666666 89999999999888888888888899999999888888888877777766 5567788877788888899


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      ++.+...+.... ++.|.   +.|++..+...    ....+|.    .+++.+.+.+.+..  +.+..+...+.+..+..
T Consensus       324 ~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~~----~~~~~g~----~~g~~l~G~l~~~~--g~~~~~~~~~~~~~~~~  392 (417)
T PRK10489        324 YLSAISSLLQYT-LLQTQTPDEMLGRINGLWT----AQNVTGD----AIGAALLGGLGAMM--TPVASASASGFGLLIIG  392 (417)
T ss_pred             HHHHHHHHHHHH-HHHhhCCHHHHHHHHHHHH----HHHhhhH----hHHHHHHHHHHHHh--chhhHHHHHHHHHHHHH
Confidence            888776555433 65554   44666433332    2333344    44444444444433  33344544444433333


Q ss_pred             HHHhhhhcccc
Q 018113          213 VIILSSWTENY  223 (360)
Q Consensus       213 ~~~~~~~~~~~  223 (360)
                      .......++.+
T Consensus       393 ~~~~~~~~~~~  403 (417)
T PRK10489        393 VLLLLVLGELR  403 (417)
T ss_pred             HHHHHhccccc
Confidence            33323344433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.28  E-value=8.6e-10  Score=100.62  Aligned_cols=148  Identities=15%  Similarity=0.124  Sum_probs=99.5

Q ss_pred             HHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHh
Q 018113           58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGI  136 (360)
Q Consensus        58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~  136 (360)
                      .+.|.+.++.|.++.+.+...+...++..++.++.|+++||+|||+.+..+.+...++. ...+.++.+.+.+..++.|+
T Consensus       241 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  320 (406)
T PRK11551        241 NWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGL  320 (406)
T ss_pred             HHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            44778888899999999999988888888999999999999999999888766666655 45566777777777788888


Q ss_pred             HhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHH
Q 018113          137 ATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV  213 (360)
Q Consensus       137 ~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  213 (360)
                      +.+...+.... +..|.   ++|++..+......        .+|..+++.+.+.+.++.+ .+...+.......++..+
T Consensus       321 ~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~~~~~--------~~g~~~g~~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~  390 (406)
T PRK11551        321 FVVGGQSVLYA-LAPLFYPTQVRGTGVGAAVAVG--------RLGSMAGPLLAGQLLALGR-STVGVIGASIPVILVAAL  390 (406)
T ss_pred             HHHhHHHHHHH-HHHHHcchhhhhhhhhHHHHhh--------hHHHHHHhhhHhhhhccCC-chHHHHHHHHHHHHHHHH
Confidence            77766666544 66664   45666333332222        2555666666666665422 333444444444444433


Q ss_pred             HH
Q 018113          214 II  215 (360)
Q Consensus       214 ~~  215 (360)
                      ..
T Consensus       391 ~~  392 (406)
T PRK11551        391 AA  392 (406)
T ss_pred             HH
Confidence            33

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.27  E-value=2e-10  Score=107.61  Aligned_cols=268  Identities=14%  Similarity=0.136  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 018113           41 NYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC  116 (360)
Q Consensus        41 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~  116 (360)
                      .++.+..+..+.+++.    ...+..+.+.|+++.++.|.+.+.+-++..+...+..+...|.-|-|.+-+++++++++.
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            3444444444444444    333778888999999999998888888777777788999999999999999999888876


Q ss_pred             -HHHhc--------------------c-----------------------------h--HH-HHHHHHHHHHhHhhhhhh
Q 018113          117 -ITKHS--------------------P-----------------------------Q--YK-ILMIGRILGGIATSLLFS  143 (360)
Q Consensus       117 -l~~~~--------------------~-----------------------------~--~~-~l~~~r~l~G~~~~~~~~  143 (360)
                       ++++-                    +                             +  ++ .++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence             43321                    0                             0  11 567789999999999999


Q ss_pred             hhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc---------cCCCCchh----hhhhHHHHHH
Q 018113          144 AFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS---------FSLGPVAP----FDAAACFLAI  210 (360)
Q Consensus       144 ~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~---------~~~~~~~~----~~~~~~~~~~  210 (360)
                      ...+ |+-|..++....-... .......+|-++|.+++++....-.|.         .+-||.-.    |++.+.+.++
T Consensus       257 lGis-YiDDnvk~~~SplYlg-i~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~  334 (735)
T KOG3626|consen  257 LGIS-YIDDNVKKKNSPLYLG-ILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF  334 (735)
T ss_pred             CCCc-cccccccccCCcHHHH-HHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence            9977 9998833333222222 222234445555555555444433332         12345444    4444444444


Q ss_pred             HHHHHhhhhccccCCCC-------------------cchh---HHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHH
Q 018113          211 GMVIILSSWTENYGDPS-------------------ESKD---LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVF  268 (360)
Q Consensus       211 ~~~~~~~~~~~~~~~~~-------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (360)
                      ..+.+ ...|++.+++.                   +.++   ..++.....+++++||.+....+...+-...... ..
T Consensus       335 ~a~p~-f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G-~~  412 (735)
T KOG3626|consen  335 SAVPL-FFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITG-YI  412 (735)
T ss_pred             HHHHH-HhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-HH
Confidence            44444 23333222110                   0111   1233445677889999998876666654444444 68


Q ss_pred             hhhccccCCCCCcchhHHH----HHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          269 LWTPALSPNDEEIPHGFIF----ATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      +|+|.|++++++.+++...    .+...+..+|.+++|++.+|++.+.
T Consensus       413 tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~  460 (735)
T KOG3626|consen  413 TFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSA  460 (735)
T ss_pred             HhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccH
Confidence            9999999999999885322    2334456678899999999997654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.27  E-value=1.6e-09  Score=94.76  Aligned_cols=252  Identities=14%  Similarity=0.148  Sum_probs=144.3

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHH-HH-HHHhcch--HH-HHHHHHHHHHhHhhhhhhhhhhH
Q 018113           74 IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-ITKHSPQ--YK-ILMIGRILGGIATSLLFSAFESW  148 (360)
Q Consensus        74 ~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~-~~-l~~~~~~--~~-~l~~~r~l~G~~~~~~~~~~~~~  148 (360)
                      .|...++..+...+.+|+.|.++|+.|+||..........+ +. ...++++  ++ ..++.-.+..++.........+ 
T Consensus        60 ~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds-  138 (438)
T COG2270          60 WGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS-  138 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh-
Confidence            35667777777888999999999999987776666555555 33 4455443  44 4445556667766666555544 


Q ss_pred             Hhhhcccc---ch------hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------cccCCCCchhhhhhHHHHHHHHH
Q 018113          149 LVAEHNKR---GF------EQQWLSITFSKAIFLGNGLVAILSGLFGNLLV------DSFSLGPVAPFDAAACFLAIGMV  213 (360)
Q Consensus       149 ~i~~~~~r---~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~------~~~~~~~~~~~~~~~~~~~~~~~  213 (360)
                      ++.+..++   ++      ..+...+.......    ++..+.+.-.+...      +..+-.-|..+.+.++-.++..+
T Consensus       139 ~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~----~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~i  214 (438)
T COG2270         139 MLPRLTTKDNMGRISGLGWALGYLGSVILLIFV----VLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFAL  214 (438)
T ss_pred             HhhhhcCccccCcccccccccccccchHHHHHH----HHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHh
Confidence            55544222   22      11111111111100    01111110000000      01122334555555555444444


Q ss_pred             HHhhhhccccCCC-Cc---chhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcchh---HH
Q 018113          214 IILSSWTENYGDP-SE---SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG---FI  286 (360)
Q Consensus       214 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  286 (360)
                      ......++.+... ++   -.+..++..++.++.++++.+..+.+...+++-+... +......|..+.+|.+..   ..
T Consensus       215 Pm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~lll~  293 (438)
T COG2270         215 PMILNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTELLLI  293 (438)
T ss_pred             HHHhcccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHHHHH
Confidence            4433333332211 11   1234566667888899999888888888888877777 466777788877787774   44


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhHhc
Q 018113          287 FATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVT  333 (360)
Q Consensus       287 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  333 (360)
                      ....++.+++|+++.|++.||+|.|  +++..+.++..+......+.
T Consensus       294 g~~~~vvA~lg~ii~g~Ld~rfg~k--~vl~~~lvi~~~~~~~~~~~  338 (438)
T COG2270         294 GIALSVVAALGAIIAGFLDERFGSK--PVLMIGLVILSIAALYLIFL  338 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCc--eeehHHHHHHHHHHHHHHHc
Confidence            4566888999999999999999999  45555555544444444443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.25  E-value=7.2e-13  Score=123.29  Aligned_cols=264  Identities=13%  Similarity=0.101  Sum_probs=3.0

Q ss_pred             hhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHh----cc-------
Q 018113           55 LQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH----SP-------  122 (360)
Q Consensus        55 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~----~~-------  122 (360)
                      +....++.+.++|+++.++.|.+.+.+-++..+..++..++.+|..|-|.+-.+.++.++++ +.++    .+       
T Consensus        21 ~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~  100 (539)
T PF03137_consen   21 YVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEA  100 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccc
Confidence            33455888999999999999999999999999999999999999888888888888888876 4322    00       


Q ss_pred             ---------------------------------------hHHHHHHHHHHHHhHhhhhhhhhhhHHhhhcccc---chhh
Q 018113          123 ---------------------------------------QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR---GFEQ  160 (360)
Q Consensus       123 ---------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r---~~~~  160 (360)
                                                             -+..++++.++.|+|....++...+ |+-|..++   +...
T Consensus       101 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t-YiDDnv~~~~splYi  179 (539)
T PF03137_consen  101 SNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT-YIDDNVSKKNSPLYI  179 (539)
T ss_dssp             ---------------------------------------------------SSS--------------------------
T ss_pred             cccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee-eeccccccccCccch
Confidence                                                   0126778999999999999999977 99997222   2223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc------------cCCCCc----hhhhhhHHHHHHHHHHHh---hhhcc
Q 018113          161 QWLSITFSKAIFLGNGLVAILSGLFGNLLVDS------------FSLGPV----APFDAAACFLAIGMVIIL---SSWTE  221 (360)
Q Consensus       161 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~------------~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~  221 (360)
                      +....    ...+|.++|.++++.......|.            .+-+|.    .-|.+.+.+.++..+.+.   ..+|+
T Consensus       180 Gi~~~----~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~  255 (539)
T PF03137_consen  180 GILYA----MSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPG  255 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhH----HhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence            33332    33333334444443333221111            122333    333334433333333331   22333


Q ss_pred             ccCC-------CCcch----h-------------HHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCC
Q 018113          222 NYGD-------PSESK----D-------------LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN  277 (360)
Q Consensus       222 ~~~~-------~~~~~----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (360)
                      +++.       +++.+    +             ..+...+..+++++||.+....+...+-.....+ ..++.|.|++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G-~~tF~pKylE~  334 (539)
T PF03137_consen  256 TSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSG-FATFLPKYLES  334 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            3000       00000    0             0011112345688888888877666665555555 58899999999


Q ss_pred             CCCcchhHHH----HHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 018113          278 DEEIPHGFIF----ATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSS  324 (360)
Q Consensus       278 ~~~~~~~~~~----~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~  324 (360)
                      +++.+++...    .+...++++|.+++|++.+|++.+.........+...
T Consensus       335 QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~  385 (539)
T PF03137_consen  335 QFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI  385 (539)
T ss_dssp             ---------------------------------------------------
T ss_pred             HhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence            9998874322    2334457789999999999996644233444333333

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.23  E-value=8.9e-09  Score=90.22  Aligned_cols=257  Identities=14%  Similarity=0.102  Sum_probs=144.1

Q ss_pred             HHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhc-----chHHHHHHHHHH-HHHH-HHH-----hcc-------h
Q 018113           63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-----RKRACVTYCLTY-ILSC-ITK-----HSP-------Q  123 (360)
Q Consensus        63 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~G-----rr~~l~~~~~~~-~~~~-l~~-----~~~-------~  123 (360)
                      +..|++++..-.+......++. ....+.+|+.+|+.+     ||...++...+. ..+. +..     ++.       +
T Consensus         6 MIvEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            4678999999999988888874 446788999999999     888777654433 3332 221     122       2


Q ss_pred             HH----HHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccC-C
Q 018113          124 YK----ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS-L  195 (360)
Q Consensus       124 ~~----~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~-~  195 (360)
                      .+    ...+...+.|+|.+...+...+ +++|.   ++|++..++.-.+..    +|.    +++..+.+.+.+.++ -
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lA-Ll~D~~~e~~R~~~v~ivw~Mli----~G~----iv~ai~~g~lL~~~s~~  155 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLA-LLADLAPEERRPRVVAIVWVMLI----VGI----IVSAIVFGRLLDPFSPE  155 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHH-HHHhcCCHhhhhhhHHHHHHHHH----HHH----HHHHHHHHHHccccCHH
Confidence            21    3344567788888887776645 77775   667775554443333    333    333344444333221 1


Q ss_pred             CCchhhhhhHHHHHHHHHHHhhhhccccCC-CC-cchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhcc
Q 018113          196 GPVAPFDAAACFLAIGMVIILSSWTENYGD-PS-ESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPA  273 (360)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (360)
                      +-.-.+.....+.....++..+. .|++.+ .+ +++++..+.++.++++..+|+...+.....+.....+. -...+-.
T Consensus       156 rL~~v~~~~a~i~~~l~~ia~wg-~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~-QD~iLEP  233 (403)
T PF03209_consen  156 RLIQVIQGVALIALLLNLIALWG-QEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFM-QDVILEP  233 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-cccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHh-hHHHcCC
Confidence            11112222222222111111111 122211 11 22333444556677888888888776655554444333 3444556


Q ss_pred             ccCCCCCcchh---HHHHHHHHHHHHHHHHHHHHHhh-cCCChhhHHHHHHHHHHHHHHHhHhc
Q 018113          274 LSPNDEEIPHG---FIFATFMLASMLGSSLASRLMAR-SPPRVESYMQIVFVVSSVSLLLPIVT  333 (360)
Q Consensus       274 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~  333 (360)
                      |--+.++.+.+   ........+..+|-...+++..| .+++  +....++..+..++......
T Consensus       234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~--~~a~~G~~~~~~~f~lii~a  295 (403)
T PF03209_consen  234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK--RTAALGCLLGALAFALIILA  295 (403)
T ss_pred             chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHH
Confidence            77778888774   34455577788888888887774 4444  45555666666555554444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.23  E-value=1.4e-09  Score=100.13  Aligned_cols=134  Identities=13%  Similarity=0.113  Sum_probs=83.1

Q ss_pred             hHHHHHHHHh-hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHH-HH-HH---HhcchHHHHHHH
Q 018113           57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-IT---KHSPQYKILMIG  130 (360)
Q Consensus        57 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~-~~-l~---~~~~~~~~l~~~  130 (360)
                      ..+.|.+.++ +|.+..+.+.......++..++.++.|+++||+|||+++..+.....+ .. ..   ...++.......
T Consensus       258 ~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (434)
T PRK15075        258 TVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAV  337 (434)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            4556776654 799999888887777777888888999999999999998876554432 21 11   123344444444


Q ss_pred             HHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCc
Q 018113          131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPV  198 (360)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~  198 (360)
                      .++.|++.+...+.... ++.|.   +.|+...+       ....++..++..++|.+.+++.|+.++++.
T Consensus       338 ~~~~~~~~g~~~~~~~~-~~~e~~p~~~rg~~~g-------~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~  400 (434)
T PRK15075        338 ELWLSFLYGSYNGAMVV-ALTEVMPAEVRTAGFS-------LAYSLATAIFGGFTPAISTWLIHVTGDKAA  400 (434)
T ss_pred             HHHHHHHHHHHHhhHHH-HHHHHCCCCccchhee-------HHHHHHHHHHhhhHHHHHHHHHHhcCCchH
Confidence            55556666555444433 56665   45555322       223344444445567777777776665543

>TIGR00897 2A0118 polyol permease family

Probab=99.20  E-value=5e-09  Score=95.47  Aligned_cols=146  Identities=17%  Similarity=0.222  Sum_probs=93.0

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHH-HHHHHHHHHH-HHH-----hcchHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV-TYCLTYILSC-ITK-----HSPQYKILMI  129 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~-~~~~~~~~~~-l~~-----~~~~~~~l~~  129 (360)
                      ..+.|.+.+++|.+..+.+.......+++.++.+..|+++||+|||+.+. .+.+..+++. ...     ..++.+...+
T Consensus       242 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~  321 (402)
T TIGR00897       242 AVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALI  321 (402)
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Confidence            34578888899999999988888888888899999999999999988764 2333333322 211     1345666777


Q ss_pred             HHHHHHhHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHH
Q 018113          130 GRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF  207 (360)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  207 (360)
                      ..++.|++.+...+. .. .+.|.  ++|+...+.    .+    .+..++..++|.+.+.+.+..  ++...+++.+.+
T Consensus       322 ~~~~~G~~~~~~~~~-~~-~~~~~~~~~~g~~~g~----~~----~~~~lg~~~gp~i~g~l~~~~--g~~~~~~~~a~~  389 (402)
T TIGR00897       322 IAIALGIFLAGYVPL-AA-VFPTLAPKHKGAAMSV----LN----LSAGLSAFLAPAIAVLFIGFF--GAIGVVWIFAAL  389 (402)
T ss_pred             HHHHHHHHHHHHHHH-HH-HHHhhCcchhHHHHHH----HH----HHHHHHHHHHHHHHHHHHhhc--chHHHHHHHHHH
Confidence            888889887765443 23 44554  445443222    22    233355566676667666653  455666666655


Q ss_pred             HHHHHHH
Q 018113          208 LAIGMVI  214 (360)
Q Consensus       208 ~~~~~~~  214 (360)
                      .++....
T Consensus       390 ~~i~~~~  396 (402)
T TIGR00897       390 YVVSAFL  396 (402)
T ss_pred             HHHHHHH
Confidence            5444433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK12382 putative transporter; Provisional

Probab=99.19  E-value=3.6e-09  Score=96.07  Aligned_cols=146  Identities=21%  Similarity=0.300  Sum_probs=95.2

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      ..+.|...++.|.+.  .+.......++..++.++.|++.||+|+||.+..+..+.+++. +..+.++.+...+..++.|
T Consensus       236 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  313 (392)
T PRK12382        236 GTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTG  313 (392)
T ss_pred             HHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            345556667777654  4444555555566777889999999999999998888887776 5567788888888899999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      ++.+...+.... .+.|.   ++|+...+....    ...    +|..+++.+.+.+.++.+|  +..+...+.+.++..
T Consensus       314 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~----~~~----~g~~ig~~~~g~l~~~~g~--~~~~~~~~~~~~~~~  382 (392)
T PRK12382        314 AGCSLIFPALGV-EVVKRVPSQVRGTALGGYAA----FQD----IAYGVSGPLAGMLATSFGY--PSVFLAGAISAVLGI  382 (392)
T ss_pred             HHHHhHHHHHHH-HHHHhcCHHHHHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHH
Confidence            998877776534 44443   455553333222    222    4555556666666665554  455666655555544


Q ss_pred             HHH
Q 018113          213 VII  215 (360)
Q Consensus       213 ~~~  215 (360)
                      ...
T Consensus       383 ~~~  385 (392)
T PRK12382        383 IVT  385 (392)
T ss_pred             HHH
Confidence            443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.17  E-value=8.2e-11  Score=96.83  Aligned_cols=242  Identities=13%  Similarity=0.081  Sum_probs=134.1

Q ss_pred             HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhh-hcchHHHHHHHHHHHHHH----HHHhcchHHHHHHHHHHH
Q 018113           60 VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC----ITKHSPQYKILMIGRILG  134 (360)
Q Consensus        60 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~----l~~~~~~~~~l~~~r~l~  134 (360)
                      -.+...|.+++.++..++++.+..-..+...++|++.|| +|-|..-++-+....++-    .....+.+|++..+|++.
T Consensus        67 q~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~F  146 (459)
T KOG4686|consen   67 QIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLF  146 (459)
T ss_pred             hhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheee
Confidence            444556777888888889888888888888899999996 577766555555555553    224578999999999999


Q ss_pred             HhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhh----hHHH
Q 018113          135 GIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDA----AACF  207 (360)
Q Consensus       135 G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~----~~~~  207 (360)
                      |+|.-..-... ..+...+   ++-+...+...+..-    +|+.+-..+.|++....-+.++-.-.....+    ....
T Consensus       147 GIGgESlAVaQ-N~yav~wFKGKELn~vfGlqlSvAR----~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~t  221 (459)
T KOG4686|consen  147 GIGGESLAVAQ-NKYAVYWFKGKELNFVFGLQLSVAR----LGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKT  221 (459)
T ss_pred             ccCchhhhhhh-cceeEEEecCccccchhhHHHHHHH----hhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence            99866553333 3354433   444444443333332    3333333333333322221111000000000    0111


Q ss_pred             HHHHHHHHh-hhhccccCCCCcchhHHHHHHH------HHHHH-hcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCC
Q 018113          208 LAIGMVIIL-SSWTENYGDPSESKDLLTQFRG------AAVAI-ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE  279 (360)
Q Consensus       208 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (360)
                      +....+... ..+.+++.     ++...+...      ...++ --.|++|.+.....++....+- .....|.++++.+
T Consensus       222 c~~slical~lg~~D~rA-----erilh~e~g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fP-Fi~lg~~fF~~rf  295 (459)
T KOG4686|consen  222 CKQSLICALSLGLSDDRA-----ERILHLEEGFLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFP-FITLGPMFFQKRF  295 (459)
T ss_pred             HHHHHHHHHHhhhhhhHH-----HHHHhhhcCcccCCcccccccccCccHHHHHHHHHHHHHHHHH-HhhhhHHHHHHhh
Confidence            111111110 11111111     100000000      00011 1237788877766666666655 3566788889988


Q ss_pred             Ccch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          280 EIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       280 ~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      +.++   +.+.+.....+.+.+++.|.++||.|++.
T Consensus       296 GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~  331 (459)
T KOG4686|consen  296 GLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL  331 (459)
T ss_pred             CCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee
Confidence            8877   45556666667788899999999999984

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.17  E-value=2.3e-10  Score=87.48  Aligned_cols=123  Identities=24%  Similarity=0.380  Sum_probs=84.3

Q ss_pred             HHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccc
Q 018113           82 FGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRG  157 (360)
Q Consensus        82 ~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~  157 (360)
                      .++..+.+++.|++.||+|||+.+..+.....++. .....++++.+.+.+++.|++.+...+.... ++.|.   ++|+
T Consensus         8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~   86 (141)
T TIGR00880         8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAA-LIADIYPPEERG   86 (141)
T ss_pred             hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHCChhhhh
Confidence            45566778889999999999999999988888876 6677789999999999999999888777645 66665   4455


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHH
Q 018113          158 FEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII  215 (360)
Q Consensus       158 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (360)
                      +..+....        +..++..+++.+.+.+.+..+  |+..+........+.....
T Consensus        87 ~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  134 (141)
T TIGR00880        87 VALGLMSA--------GIALGPLLGPPLGGVLAQFLG--WRAPFLFLAILALAAFILL  134 (141)
T ss_pred             HHHHHHHH--------hHHHHHHHhHHhHHHHhcccc--hHHHHHHHHHHHHHHHHHH
Confidence            53333322        222455555555555555444  4455666555554444444

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.17  E-value=1e-08  Score=92.69  Aligned_cols=143  Identities=13%  Similarity=0.022  Sum_probs=88.5

Q ss_pred             HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HH-HhcchHHHHHHHHHHHHhH
Q 018113           60 VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT-KHSPQYKILMIGRILGGIA  137 (360)
Q Consensus        60 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~-~~~~~~~~l~~~r~l~G~~  137 (360)
                      .|.+.+++|.++.+.+...+...++..++.++.|++.||+|+|+.+..+..+.+++. +. ...++.+...+..++.+.+
T Consensus       223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g  302 (382)
T PRK10091        223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAG  302 (382)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            345556689999999999998888889999999999999999999998888777765 33 3345555666666666766


Q ss_pred             hhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHH
Q 018113          138 TSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI  210 (360)
Q Consensus       138 ~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  210 (360)
                      .....+........+. .+++..+..  ...    ....+|..++|.+++.+.|.. .+++..+...+.+..+
T Consensus       303 ~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~----~~~~~g~~~Gp~~~G~l~~~~-~~~~~~~~~~~~~~~~  367 (382)
T PRK10091        303 LFALSAPLQILLLQNA-KGGELLGAA--GGQ----IAFNLGSAIGAYCGGMMLTLG-LAYNYVALPAALLSFA  367 (382)
T ss_pred             HHhhhHHHHHHHHHhC-CcchHHHHH--HHH----HHHHHHHHHHHHHhHHHHHcc-cCcchHHHHHHHHHHH
Confidence            5554443323223322 111211111  111    223466677777777766632 2344555554444333

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.16  E-value=1.7e-09  Score=98.01  Aligned_cols=130  Identities=13%  Similarity=0.164  Sum_probs=88.3

Q ss_pred             hHHHHHHH-HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHH-HH--HHHh--cchHHHHHHH
Q 018113           57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC--ITKH--SPQYKILMIG  130 (360)
Q Consensus        57 ~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~-~~--l~~~--~~~~~~l~~~  130 (360)
                      ..+.|.+. +++|.++.+.+.......+...++.++.|+++||+|||+.+.....+..+ +.  ...+  .++.+.+...
T Consensus       239 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (394)
T TIGR00883       239 TTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFL  318 (394)
T ss_pred             HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            45566665 67899999999888888888888889999999999999987765544433 32  2222  2456666777


Q ss_pred             HHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 018113          131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS  194 (360)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~  194 (360)
                      .++.|++.+...+.... ++.|.   ++|+...+.       ....+..+|..++|.+++.+.++.+
T Consensus       319 ~~~~g~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~-------~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       319 VLGLALIGGMYTGPMGS-FLPELFPTEVRYTGASL-------AYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             HHHHHHHHHHHhhhHHH-HHHHhCCccceeeEeee-------hhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            88888888777777645 77775   445553322       1223344555666777777666555

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.16  E-value=1.5e-08  Score=92.01  Aligned_cols=155  Identities=14%  Similarity=0.068  Sum_probs=88.4

Q ss_pred             HHHHHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHH-HHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-H-HHh----
Q 018113           48 LMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFG-SSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I-TKH----  120 (360)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l-~~~----  120 (360)
                      +....+.....+.+...+|.|++++++|.+...... ...++..+.|++.||+|+|+.+..+....++.. . ...    
T Consensus       219 l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~  298 (390)
T TIGR02718       219 LSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFW  298 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            333333333445666677899999999998777654 444556789999999999999988776653322 1 111    


Q ss_pred             -cchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 018113          121 -SPQYKILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL  195 (360)
Q Consensus       121 -~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~  195 (360)
                       .++...+.....+.++..+...+...+ ...+.    ++++...+..+.    ...    +|..+++.+++.+.|..| 
T Consensus       299 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~----~~~----lg~~~g~~~~G~l~~~~G-  368 (390)
T TIGR02718       299 LAPGIAVAWSCSAFGSLITGITSVAIYT-AFMRFAGDGDQAGTDVTAVQS----TRD----LGELIASSIAGYLTDRFG-  368 (390)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCcccchHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHHc-
Confidence             233334444455555555655554434 33222    233443222222    223    455566666666666544 


Q ss_pred             CCchhhhhhHHHHHHHHH
Q 018113          196 GPVAPFDAAACFLAIGMV  213 (360)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~  213 (360)
                       ++..|...+.+.++...
T Consensus       369 -~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       369 -YAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             -cHHHHHHHHHHHHHHHH
Confidence             44566666555554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.16  E-value=8.8e-09  Score=91.64  Aligned_cols=148  Identities=23%  Similarity=0.297  Sum_probs=108.0

Q ss_pred             hHHHHHHHHhh-CCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchH-HHHHHHHHHHHHH-HHHhcchHHHHHHHHHH
Q 018113           57 GPYVYYLYSTY-GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKR-ACVTYCLTYILSC-ITKHSPQYKILMIGRIL  133 (360)
Q Consensus        57 ~~~~~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~-~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l  133 (360)
                      ..+.|.+.++. |.++.+.+.......++..++.++.|++.||+|||+ .+..+..+..++. .....++.+...+..++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  274 (352)
T cd06174         195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL  274 (352)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            45566666664 999999999999999999999999999999999999 9999988888877 66777888888999999


Q ss_pred             HHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHH
Q 018113          134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI  210 (360)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  210 (360)
                      .|++.+...+.... ++.|.   ++|++..+.    .+..    ..++..+++.+.+.+.+..  +|+..+.+.+.+.++
T Consensus       275 ~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~----~~~~~~i~~~i~g~l~~~~--~~~~~~~~~~~~~~i  343 (352)
T cd06174         275 LGFGLGFAFPALLT-LASELAPPEARGTASGL----FNTF----GSLGGALGPLLAGLLLDTG--GYGGVFLILAALALL  343 (352)
T ss_pred             HHHHHhccchhHHH-HHHhhcCHHHHHHHHHH----HHHH----HHHHHHHHHHHHHHHhccc--CcchHHHHHHHHHHH
Confidence            99999988887755 76765   445553322    2222    2255556666666655543  455666666666655


Q ss_pred             HHHHH
Q 018113          211 GMVII  215 (360)
Q Consensus       211 ~~~~~  215 (360)
                      ..+..
T Consensus       344 ~~i~~  348 (352)
T cd06174         344 AALLL  348 (352)
T ss_pred             HHHHh
Confidence            54443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.15  E-value=5.7e-08  Score=90.72  Aligned_cols=148  Identities=14%  Similarity=0.174  Sum_probs=84.3

Q ss_pred             HHHHHHhhCCChhhhHHHH-HHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH----HHHhc-chHHHHHHHHHH
Q 018113           60 VYYLYSTYGFGKGEIGQLF-IAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHS-PQYKILMIGRIL  133 (360)
Q Consensus        60 ~~~~~~~~g~s~~~~g~~~-~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~----l~~~~-~~~~~l~~~r~l  133 (360)
                      .|.+.+++|.|.++.+... ....++..++.++.|+++||+|+|+.+..+.+..+++.    ..+.. ++...+...-++
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l  325 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF  325 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            4455667999999999987 46667788888899999999999998877665544432    12333 344444444455


Q ss_pred             HHhHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHH
Q 018113          134 GGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV  213 (360)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  213 (360)
                      ..+..+...+...+ +..+..++..... ..+..+..    ..+|..+++.+.+.+.+..|  |+..|.+..++.+.+.+
T Consensus       326 ~~~~~g~~~~~~~a-~~~~l~~~~~~~t-~~gl~~s~----~~lg~~~~~~~~G~l~~~~G--~~~~f~~~~~~~l~~l~  397 (491)
T PRK11010        326 ENLCGGMGTAAFVA-LLMTLCNKSFSAT-QFALLSAL----SAVGRVYVGPVAGWFVEAHG--WPTFYLFSVAAAVPGLL  397 (491)
T ss_pred             HHHHHHHHHHHHHH-HHHHHcCCCCcHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHH
Confidence            44333333333322 4344311212111 22222222    23555566666777776554  55666666666655544


Q ss_pred             HH
Q 018113          214 II  215 (360)
Q Consensus       214 ~~  215 (360)
                      ..
T Consensus       398 ~~  399 (491)
T PRK11010        398 LL  399 (491)
T ss_pred             HH
Confidence            44

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.15  E-value=1e-08  Score=94.38  Aligned_cols=181  Identities=15%  Similarity=0.144  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHHHHHHhhhhhHH---HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcch--HHHHHHHHHH
Q 018113           38 FKNNYLLVYSLMMAGDWLQGPY---VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK--RACVTYCLTY  112 (360)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr--~~l~~~~~~~  112 (360)
                      ++.....+.......|++.+..   ..+..+++|++..+...+.....+.+.+++.++|++.||+|.|  +++..+.+.+
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            3333334444444556666322   4445568999999999888888888999999999999999999  8988888877


Q ss_pred             HHHH-HHHh--------cchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 018113          113 ILSC-ITKH--------SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSG  183 (360)
Q Consensus       113 ~~~~-l~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~  183 (360)
                      .+.. ...+        .++.+.+.+.-++.|+..|..++...+ +.+|.-++++... ..+.+.   ..|- ....++|
T Consensus       360 ~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs-~~~~LiP~g~e~e-fFgly~---i~gk-~ss~lGP  433 (477)
T PF11700_consen  360 IIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRS-LFSRLIPPGREAE-FFGLYA---ITGK-ASSWLGP  433 (477)
T ss_pred             HHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHH-HHHHhCCCchhhH-HHHHHH---HHHH-HHHHHHH
Confidence            5533 2222        567788899999999999999999977 8787744444322 222333   2232 4456666


Q ss_pred             hhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCC
Q 018113          184 LFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP  226 (360)
Q Consensus       184 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (360)
                      .+.+.+.+..+ +.|..+....++.++..++. .+.+++++++
T Consensus       434 ll~g~i~~~tg-~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~~  474 (477)
T PF11700_consen  434 LLFGLITDATG-SQRYGFLFLLVLFLIGLILL-FFVDVEKGRE  474 (477)
T ss_pred             HHHHHHHHHhC-CchhHHHHHHHHHHHHHHHH-hhccchhhhh
Confidence            66666555443 34566666666666666655 4555554443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10504 putative transporter; Provisional

Probab=99.13  E-value=1.1e-08  Score=95.26  Aligned_cols=123  Identities=22%  Similarity=0.230  Sum_probs=80.6

Q ss_pred             HHHHHHHH-hhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc---chHHHHHHHHH
Q 018113           58 PYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS---PQYKILMIGRI  132 (360)
Q Consensus        58 ~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~---~~~~~l~~~r~  132 (360)
                      .+.|++.+ .+|.++.+.+.......++..+..++.|++.||+|||+++..+....+++. +..+.   ++.+.+.+..+
T Consensus       282 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (471)
T PRK10504        282 FMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLF  361 (471)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            34666655 589999999988887777777777899999999999999998888777754 43332   33344455567


Q ss_pred             HHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018113          133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (360)
Q Consensus       133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  185 (360)
                      +.|++.+..++.... +..+.   ++|+...+...    ....+|..+|+.+++.+
T Consensus       362 ~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~----~~~~~g~~ig~~i~g~l  412 (471)
T PRK10504        362 LQGMVNSTRFSSMNT-LTLKDLPDNLASSGNSLLS----MIMQLSMSIGVTIAGLL  412 (471)
T ss_pred             HHHHHHHHHHHHHHH-HHHHcCCHHhccchHHHHH----HHHHHHHHHHHHHHHHH
Confidence            778877777666544 44443   45666444433    33344444444444433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.11  E-value=4.9e-09  Score=97.43  Aligned_cols=149  Identities=11%  Similarity=0.018  Sum_probs=90.4

Q ss_pred             HHHHH-HHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-H--HHhcchHHHHHHHHHH
Q 018113           58 PYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I--TKHSPQYKILMIGRIL  133 (360)
Q Consensus        58 ~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l--~~~~~~~~~l~~~r~l  133 (360)
                      .+.|. +.+++|+|..+.+...+...++..++.++.|+++||+|||+.+........++. +  ....++.....+.+++
T Consensus       279 ~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (467)
T PRK09556        279 NWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFA  358 (467)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            44664 456799999999998888888888999999999999999988766554444332 2  2334566666677888


Q ss_pred             HHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc----------cCCCCchh
Q 018113          134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS----------FSLGPVAP  200 (360)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~----------~~~~~~~~  200 (360)
                      .|+......... .....|.   +.|+.       ..+.....++..|..++|.+.+.+.|.          ...+|+..
T Consensus       359 ~G~~~~~~~~~~-~~~~~~~~p~~~~g~-------a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~  430 (467)
T PRK09556        359 LGFLVFGPQLLI-GVAAVGFVPKKAIGV-------ANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGT  430 (467)
T ss_pred             HHHHHhhHHHHH-HHHHHhhcchhhHHH-------HHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHH
Confidence            886433322221 1244454   34444       333333344434556667777776660          01235566


Q ss_pred             hhhhHHHHHHHHHH
Q 018113          201 FDAAACFLAIGMVI  214 (360)
Q Consensus       201 ~~~~~~~~~~~~~~  214 (360)
                      |....+..+++.+.
T Consensus       431 f~~~~~~~~~~~~~  444 (467)
T PRK09556        431 FAALDIAAIGCICL  444 (467)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66655555544333

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.11  E-value=4.5e-09  Score=101.28  Aligned_cols=134  Identities=21%  Similarity=0.167  Sum_probs=90.5

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---
Q 018113           78 FIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---  153 (360)
Q Consensus        78 ~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---  153 (360)
                      .....++..++.++.|+++||+|||++++.+.++.+++. +.++.++...+++.+++.|+..+..++.... +++|.   
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a-~~aEl~Pt  679 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDV-LTVELYPS  679 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCH
Confidence            334456667778899999999999999999999888876 6677787778888888888887777776644 78886   


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccC
Q 018113          154 NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYG  224 (360)
Q Consensus       154 ~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (360)
                      +.|+...+.....       + .+|.+++|.+++.+.+.   ....++.+.+++.+++.++. ..+||+++
T Consensus       680 ~~Rgta~Gi~~~~-------~-rlGaiigp~i~g~L~~~---~~~~pf~i~a~~lll~~ll~-~~LPET~~  738 (742)
T TIGR01299       680 DKRATAFGFLNAL-------C-KAAAVLGILIFGSFVGI---TKAAPILFASAALACGGLLA-LKLPDTRG  738 (742)
T ss_pred             HHHHHHHHHHHHH-------H-HHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHH-HhCCCCcc
Confidence            5566633333222       2 25666666666555432   23356666665555555544 45576554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.11  E-value=3.6e-09  Score=97.86  Aligned_cols=146  Identities=12%  Similarity=0.024  Sum_probs=94.9

Q ss_pred             HHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhh--cchHHHHHHH--HHHHHHH-HHHhcchHHHHHHHHH
Q 018113           58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACVTYC--LTYILSC-ITKHSPQYKILMIGRI  132 (360)
Q Consensus        58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~--Grr~~l~~~~--~~~~~~~-l~~~~~~~~~l~~~r~  132 (360)
                      .++|.+.+++|.+..+.+...+...++..++.++.|+++||.  ++|+....+.  +..+++. +....++++.+++.++
T Consensus       262 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~  341 (455)
T TIGR00892       262 IFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCI  341 (455)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            456777788999999999999988888888888999999973  4444443333  3333344 4466788888889999


Q ss_pred             HHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHH
Q 018113          133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA  209 (360)
Q Consensus       133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  209 (360)
                      +.|++.+...+...+ ++.|.   ++++...+.    ++    ....+|..++|.+++.+.+..+ +|+..|...+++.+
T Consensus       342 ~~G~~~g~~~~~~~~-~~~~~~~~~~~g~~~g~----~~----~~~~lg~~igp~i~G~l~~~~g-~~~~~f~~~~~~~l  411 (455)
T TIGR00892       342 FFGLSFGSVGALLFE-VLMDLVGAQRFSSAVGL----VT----IVECCAVLIGPPLAGRLVDATK-NYKYIFYASGSIVV  411 (455)
T ss_pred             HHHHHhchHHHHHHH-HHHHHhhHHHHhhHHhH----HH----HHHHHHHHccccceeeeehhcC-CcchHHHHhhHHHH
Confidence            999998887776645 66654   344443222    22    2233566777777776666442 24455655544444


Q ss_pred             HHHH
Q 018113          210 IGMV  213 (360)
Q Consensus       210 ~~~~  213 (360)
                      +..+
T Consensus       412 i~~~  415 (455)
T TIGR00892       412 SAGL  415 (455)
T ss_pred             HHHH
Confidence            4333

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.10  E-value=1.2e-08  Score=91.31  Aligned_cols=125  Identities=14%  Similarity=0.076  Sum_probs=89.2

Q ss_pred             HHHHHHHHh-hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcch-HHHHHHHHHHH
Q 018113           58 PYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQ-YKILMIGRILG  134 (360)
Q Consensus        58 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~-~~~l~~~r~l~  134 (360)
                      ...|.+.++ +|.++.+.+.......++..++.++.|++.||+|||+.+..+....+++. ...+.++ .+.+.+..++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI  311 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence            446777665 89999999999888888888888899999999999999888877766665 5555554 77888889999


Q ss_pred             HhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 018113          135 GIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD  191 (360)
Q Consensus       135 G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~  191 (360)
                      |++.+...+.... ++.|.   ++|+...+....    ...    ++..+++.+.+.+.|
T Consensus       312 g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~----~~~----~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       312 GVGYGPINVPQGT-LLQRRVPAELLGRVFGAQFS----LSH----AAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH----HHH----HHHHHHHHHHHHHHH
Confidence            9999888777645 66665   445553333222    222    444455555554444

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.07  E-value=8.1e-08  Score=87.67  Aligned_cols=125  Identities=12%  Similarity=0.032  Sum_probs=80.6

Q ss_pred             HHHH-HHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHh-----cchHHHHHHHHH
Q 018113           60 VYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH-----SPQYKILMIGRI  132 (360)
Q Consensus        60 ~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~-----~~~~~~l~~~r~  132 (360)
                      .|.+ .+++|.++.+.+........+..++.++.|+++||+|+|+.+..+.+...++. +...     .++.+.+.+..+
T Consensus       238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK15402        238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS  317 (406)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            4444 46789999999888777777677788899999999999999988877776655 3332     235666777888


Q ss_pred             HHHhHhhhhhhhhhhHH-hhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 018113          133 LGGIATSLLFSAFESWL-VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS  192 (360)
Q Consensus       133 l~G~~~~~~~~~~~~~~-i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~  192 (360)
                      +.|++.+...+...... ..+.++|++..+    ..+.....+.    .+++.+.+.+.+.
T Consensus       318 ~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~----~~g~~~~~~l~~~  370 (406)
T PRK15402        318 LYAFGIGLANAGLYRLTLFSSDVSKGTVSA----AMGMLSMLIF----TVGIELSKHAYLG  370 (406)
T ss_pred             HHHHHHHHHhhhHHHHHhhhccccccHHHH----HHHHHHHHHH----HHHHHHHHhcccC
Confidence            89998887765543311 122256666333    3333333344    4444444544443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.06  E-value=2.9e-08  Score=90.24  Aligned_cols=138  Identities=12%  Similarity=0.114  Sum_probs=91.6

Q ss_pred             CCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhh
Q 018113           68 GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFE  146 (360)
Q Consensus        68 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  146 (360)
                      +.+..+.|...+...+...+.....|++.||+|||+.+.++..+.+++. +...+++.+.+...+++.|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556677888888877777888889999999999999999888888866 556788888888889999988665544332


Q ss_pred             hHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHH
Q 018113          147 SWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV  213 (360)
Q Consensus       147 ~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  213 (360)
                      . +..+. ++|....     ..+.+......+|..+++.+++++.|..  +++..|...+.+..+..+
T Consensus       330 ~-~~~~~~~~~~~at-----~~~~~~~~~~~lg~~~~~~l~G~l~~~~--G~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       330 K-YITSQFDVRLSAT-----IYLIGFQFAKQLAMIFLSTLAGNMYDSI--GFQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             H-HHHHhCCcceEEE-----eehHHHHHHHHHHHHHHHHhHHHHHHhc--ccHHHHHHHHHHHHHHHH
Confidence            2 44433 3332211     1111122334466677777777777654  455667666555544433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.06  E-value=7.7e-08  Score=87.38  Aligned_cols=80  Identities=18%  Similarity=0.145  Sum_probs=58.5

Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhh
Q 018113           62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSL  140 (360)
Q Consensus        62 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~  140 (360)
                      ...+++|.++.+.+.......+...++.++.|++.||+|||+.+..+..+..++. +..+.++.+.....-.+.+.+.+.
T Consensus       229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  308 (392)
T PRK10473        229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSV  308 (392)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456789999999988888888888888899999999999999999888777766 445544444444444444444443


Q ss_pred             h
Q 018113          141 L  141 (360)
Q Consensus       141 ~  141 (360)
                      .
T Consensus       309 ~  309 (392)
T PRK10473        309 G  309 (392)
T ss_pred             H
Confidence            3

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.06  E-value=6.1e-08  Score=89.20  Aligned_cols=58  Identities=22%  Similarity=0.335  Sum_probs=45.4

Q ss_pred             hHHHHHHH-HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL  114 (360)
Q Consensus        57 ~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~  114 (360)
                      ..++|.+. +++|.+..+.+...+.......+++++.|+++||+|||+.+..+.++.++
T Consensus       263 ~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~  321 (432)
T PRK10406        263 TTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAAL  321 (432)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            34566655 56899998998888887777888888899999999999988776654433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.05  E-value=7.6e-08  Score=87.42  Aligned_cols=140  Identities=11%  Similarity=0.103  Sum_probs=88.1

Q ss_pred             HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHH-HH-HHHhcchHHHHHHHHHHHHhH
Q 018113           60 VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-ITKHSPQYKILMIGRILGGIA  137 (360)
Q Consensus        60 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~-~~-l~~~~~~~~~l~~~r~l~G~~  137 (360)
                      .|.+.+++|.+..+.+.......+++.+++.+.|++.||.+ |+.+..+.....+ .. +....++.+.+....++.|++
T Consensus       240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~  318 (394)
T PRK10213        240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLT  318 (394)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            46677889999999999888888888888889999999964 4444444444333 34 334556777777888999999


Q ss_pred             hhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHH
Q 018113          138 TSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG  211 (360)
Q Consensus       138 ~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  211 (360)
                      .+...+.... .+.+.  +++++..+.    .....    .+|..+++.+++.+.|..+  .+..+...+.+.++.
T Consensus       319 ~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~----~lg~~~G~~l~G~l~~~~g--~~~~~~~~~~~~~~~  383 (394)
T PRK10213        319 FALVPVGWST-WITRSLADQAEKAGSI----QVAVI----QLANTCGAAIGGYALDNIG--LTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHhhhHHHHH-HHHHHCcccHHHHHHH----HHHHH----HHHHHHHHHHHHHHHhccC--hhhHHHHHHHHHHHH
Confidence            8887776644 55543  222332222    22222    2455666666666666543  445555554444333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.05  E-value=1.3e-08  Score=93.79  Aligned_cols=83  Identities=17%  Similarity=0.155  Sum_probs=62.5

Q ss_pred             ChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc-chHHHHHHHHHHHHhHhhhhhhhhhh
Q 018113           70 GKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-PQYKILMIGRILGGIATSLLFSAFES  147 (360)
Q Consensus        70 s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~  147 (360)
                      ++.+.+.......++..++.++.++++||+|+|+++..+..+.+++. ...+. ++.+.+.+..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777777778788888899999999999999999988777766 44443 45666777788888888887776644


Q ss_pred             HHhhhc
Q 018113          148 WLVAEH  153 (360)
Q Consensus       148 ~~i~~~  153 (360)
                       +++|.
T Consensus       335 -~~~~~  339 (437)
T TIGR00792       335 -LVADT  339 (437)
T ss_pred             -HHhhh
Confidence             65553

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.04  E-value=2.6e-08  Score=92.92  Aligned_cols=159  Identities=14%  Similarity=0.096  Sum_probs=92.8

Q ss_pred             HHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc---chHH-HHHHHHHH
Q 018113           59 YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS---PQYK-ILMIGRIL  133 (360)
Q Consensus        59 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~---~~~~-~l~~~r~l  133 (360)
                      +.|.+.++.|.+..+.+.......+...++.++.|+++||+|||+.++.+.+..+++. +.+..   +... ....+.++
T Consensus       293 ~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~  372 (479)
T PRK10077        293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF  372 (479)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            3688888999887766666666666677888899999999999999999988887765 33221   1111 22233344


Q ss_pred             HHhHhhhhh-hhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhcccCCCCchhhhhhHHH
Q 018113          134 GGIATSLLF-SAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG--NLLVDSFSLGPVAPFDAAACF  207 (360)
Q Consensus       134 ~G~~~~~~~-~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~--~~l~~~~~~~~~~~~~~~~~~  207 (360)
                      .+.+.+... +.. ..++.|.   ++|+...+......    .+|..+++.+.|.+.  +++.+.  ++++..|+..+.+
T Consensus       373 ~~~~~~~~~~~~~-~~~~~e~~p~~~r~~~~g~~~~~~----~~g~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~  445 (479)
T PRK10077        373 YVAAFAMSWGPVC-WVLLSEIFPNAIRGKALAIAVAAQ----WIANYFVSWTFPMMDKNSWLVAH--FHNGFSYWIYGCM  445 (479)
T ss_pred             HHHHHhccccchh-HHHhHhhCChhHHHHHHHHHHHHH----HHHHHHHHHHhHHHHhccchhhh--ccCccHHHHHHHH
Confidence            444444322 333 3367776   45666444433333    344444444445444  333343  3445566666555


Q ss_pred             HHHHHHHHhhhhccccC
Q 018113          208 LAIGMVIILSSWTENYG  224 (360)
Q Consensus       208 ~~~~~~~~~~~~~~~~~  224 (360)
                      .++..+......||+++
T Consensus       446 ~~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        446 GVLAALFMWKFVPETKG  462 (479)
T ss_pred             HHHHHHHHHhccccCCC
Confidence            55555555344555543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.01  E-value=2.7e-08  Score=88.63  Aligned_cols=146  Identities=11%  Similarity=0.094  Sum_probs=104.4

Q ss_pred             ChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhH
Q 018113           70 GKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESW  148 (360)
Q Consensus        70 s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  148 (360)
                      ++...|.+.+...+.-.+.-.+..++.+|+|.|+.++++....++=. +++++++.+.+...+.+.|+-.+........ 
T Consensus       257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk-  335 (412)
T PF01306_consen  257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK-  335 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            34556777777777666666678999999999999999999988866 8899999999999999999999988888867 


Q ss_pred             HhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccc
Q 018113          149 LVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTEN  222 (360)
Q Consensus       149 ~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (360)
                      |+++..++..    ....+..+..++..+|..+.+.+++.+.|+.|.  +..|++.+.+.+...++....++++
T Consensus       336 YI~~~fd~rl----sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~--~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  336 YITAHFDKRL----SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGF--QHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHS-GGG----HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHHhCCHhH----HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCc--HHHHHHHHHHHHHHHHHheeeecCC
Confidence            8887622222    334555566677778888888888888887554  3556666666555555543444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09848 glucuronide transporter; Provisional

Probab=99.01  E-value=2.9e-08  Score=91.86  Aligned_cols=119  Identities=9%  Similarity=0.055  Sum_probs=76.2

Q ss_pred             HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc--chHHHHHHHHHHHHhHhhhh
Q 018113           65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS--PQYKILMIGRILGGIATSLL  141 (360)
Q Consensus        65 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~--~~~~~l~~~r~l~G~~~~~~  141 (360)
                      +.+|.++...+.......++..++.++.+++.||+|+|+++..+.++..++. +..+.  ++.+.+.+..++.|+|.+..
T Consensus       257 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~  336 (448)
T PRK09848        257 YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVT  336 (448)
T ss_pred             eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence            3467655544444444455566778899999999999999999988877766 44443  35666677788899998888


Q ss_pred             hhhhhhHHhhhc---cc--cc-hhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 018113          142 FSAFESWLVAEH---NK--RG-FEQQWLSITFSKAIFLGNGLVAILSGL  184 (360)
Q Consensus       142 ~~~~~~~~i~~~---~~--r~-~~~~~~~~~~~~~~~~g~~~g~~~~~~  184 (360)
                      .+...+ +.+|.   ++  +| +..+...+..+....+|.++|..+.+.
T Consensus       337 ~~~~~a-l~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~  384 (448)
T PRK09848        337 MTVMWA-LEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF  384 (448)
T ss_pred             HHHHHH-HHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777655 55543   11  11 222334445555555555555555443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.99  E-value=3e-08  Score=92.25  Aligned_cols=155  Identities=13%  Similarity=0.063  Sum_probs=91.3

Q ss_pred             HHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHH---h--cc------hHH
Q 018113           58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK---H--SP------QYK  125 (360)
Q Consensus        58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~---~--~~------~~~  125 (360)
                      .+.|.+.+++|.+..+.+.......+...++.++.|+++||+|||+.+..+.++.+++. +..   .  .+      +..
T Consensus       305 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (481)
T TIGR00879       305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNV  384 (481)
T ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHH
Confidence            44788888999999888888888888888888899999999999999998877776655 333   1  12      222


Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhh
Q 018113          126 ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFD  202 (360)
Q Consensus       126 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~  202 (360)
                      .+....+..+.......+.. ..++.|.   ++|+...+..    ...    ..+|..+++.+.+.+.+..+|+  ..|+
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~----~~~----~~lg~~i~~~~~~~~~~~~~~~--~~f~  453 (481)
T TIGR00879       385 AIVFILLFIAFFAMGWGPVP-WVIVSEIFPLSLRPKGISIA----VAA----NWLANFIVGFLFPTMLESIGVG--GVFI  453 (481)
T ss_pred             HHHHHHHHHHHHHccccCee-hhhhhccCChHHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHHhcCcc--ceeh
Confidence            22222222222222222333 3355665   3455533222    222    2255566666666655554544  5566


Q ss_pred             hhHHHHHHHHHHHhhhhcccc
Q 018113          203 AAACFLAIGMVIILSSWTENY  223 (360)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~  223 (360)
                      +.+.+.++..+......||++
T Consensus       454 ~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       454 FFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             hHHHHHHHHHHHHheecccCC
Confidence            666655555555534445544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.97  E-value=3e-08  Score=93.03  Aligned_cols=130  Identities=14%  Similarity=0.108  Sum_probs=82.0

Q ss_pred             HHHHHHH-HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHh--cchHHHHHHHHHH
Q 018113           58 PYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH--SPQYKILMIGRIL  133 (360)
Q Consensus        58 ~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~--~~~~~~l~~~r~l  133 (360)
                      .++|.+. +++|.+..+.+.+.+...++..++.++.|+++||+|||+++..+..+..+.. +...  .++.+......++
T Consensus       296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (496)
T PRK03893        296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF  375 (496)
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            3466666 5899999999999999999899999999999999999999888876666544 2222  2333444444444


Q ss_pred             HHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Q 018113          134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG  196 (360)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~  196 (360)
                      .+.......+.. +.++.|.   ++|+...+......        .+|..++|.+++.+.+..+++
T Consensus       376 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~--------~~g~~lgp~l~g~l~~~~g~~  432 (496)
T PRK03893        376 QQMLGQGISGLL-PKLIGGYFDTEQRAAGLGFTYNVG--------ALGGALAPILGALIAQRLDLG  432 (496)
T ss_pred             HHHHhcccchhh-HHHHHhhCCHHHhhcccchhhhhh--------hHHHHHHHHHHHHHhccCChH
Confidence            443332333333 3355554   45666433322222        255566666666666655544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.97  E-value=2.9e-07  Score=83.94  Aligned_cols=144  Identities=14%  Similarity=0.188  Sum_probs=84.2

Q ss_pred             HHHHHHhhCCChhhhHHHHHHH-HHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH----HHHhc-chHHHHHHHHH-
Q 018113           60 VYYLYSTYGFGKGEIGQLFIAG-FGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHS-PQYKILMIGRI-  132 (360)
Q Consensus        60 ~~~~~~~~g~s~~~~g~~~~~~-~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~----l~~~~-~~~~~l~~~r~-  132 (360)
                      .+.+.+++|+++++.+.+.... ..+..++.++.|++.||+|+|+.+..+.....+..    ..++. ++.+.+...-+ 
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  312 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI  312 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            3456677999999999887554 44566777889999999999998877776655543    22343 45555554443 


Q ss_pred             ---HHHhHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHH
Q 018113          133 ---LGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA  209 (360)
Q Consensus       133 ---l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  209 (360)
                         ..|++.+...+.... ++.+..+ +..    .+..+....    ++...++.+++.+.|..|  |+..|...+.+.+
T Consensus       313 ~~~~~g~~~~~~~~~~~~-~~~~~~~-~~~----~~~~~~~~~----l~~~~~~~~~G~l~~~~G--~~~~f~~~~~~~~  380 (402)
T PRK11902        313 ENLCGGMGTAAFVALLMA-LCNRSFS-ATQ----YALLSALAS----VGRVYVGPTSGYLVEAYG--WPGFYLMTVVIAL  380 (402)
T ss_pred             HHHHHHHHHHHHHHHHHH-hcCCCCc-HHH----HHHHHHHHH----HHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHH
Confidence               445555555444423 4444311 111    111221222    333434446666666644  5566777776666


Q ss_pred             HHHHHH
Q 018113          210 IGMVII  215 (360)
Q Consensus       210 ~~~~~~  215 (360)
                      +..++.
T Consensus       381 ~~~~~~  386 (402)
T PRK11902        381 PGLALL  386 (402)
T ss_pred             HHHHHH
Confidence            665554

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.97  E-value=1.9e-07  Score=87.01  Aligned_cols=124  Identities=21%  Similarity=0.232  Sum_probs=93.2

Q ss_pred             HHHHHH-HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHh
Q 018113           59 YVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGI  136 (360)
Q Consensus        59 ~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~  136 (360)
                      .+|.+. +++|.++...|.+.+...+++.+++...+++.+|+++++.+..+.+..+++. ..+++++.+..++..++.|+
T Consensus       240 LlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~  319 (524)
T PF05977_consen  240 LLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGA  319 (524)
T ss_pred             hhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            366665 4689999999999999999999999999999999999999988888888877 77889999998889999999


Q ss_pred             HhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018113          137 ATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN  187 (360)
Q Consensus       137 ~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  187 (360)
                      +.....+.... .+.+.   +.||+..+.......    .+..+|..+.+.+++
T Consensus       320 ~~~~~~~~~~t-~~Q~~~P~~~~GRv~si~~~~~~----g~~~lGsll~G~la~  368 (524)
T PF05977_consen  320 AWIIANSSLNT-LVQLSVPDWVRGRVFSIYQMVFF----GGMPLGSLLWGFLAD  368 (524)
T ss_pred             HHHHHHHHHHH-HHHHhCCHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            88877665544 43332   567775555444433    344445555554444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.97  E-value=3.8e-08  Score=90.40  Aligned_cols=128  Identities=18%  Similarity=0.158  Sum_probs=76.4

Q ss_pred             HHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHh
Q 018113           58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGI  136 (360)
Q Consensus        58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~  136 (360)
                      ..+|.+.++.|.++.+.+...+...++..++.++.|++.||+|||+.+..+.++..+.. .....++.......-.+.|.
T Consensus       252 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (426)
T PRK12307        252 GLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGL  331 (426)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence            44677778889999999988888888888889999999999999999888877766554 33222221112222233333


Q ss_pred             Hh--hhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 018113          137 AT--SLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS  194 (360)
Q Consensus       137 ~~--~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~  194 (360)
                      +.  ....+.. +.++.|.   ++|+...+...       ..+. ++..++|.+.+++.+..+
T Consensus       332 ~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~-------~~~~-~~~~~gp~~~g~l~~~~g  385 (426)
T PRK12307        332 MATNVGVGGLV-PKFLYDYFPLEVRGLGTGLIY-------NLAA-TSGTFNSMAATWLGITMG  385 (426)
T ss_pred             HHhcccHhHHH-HHHHHHhCcHHHHhhhhhHHH-------HHHh-HHHHHHHHHHHHHHHccc
Confidence            22  2222222 2255554   44555333222       2222 455666666666665544

>TIGR00896 CynX cyanate transporter

Probab=98.96  E-value=1.6e-07  Score=84.12  Aligned_cols=90  Identities=9%  Similarity=0.053  Sum_probs=67.7

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhh-cchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG  134 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~  134 (360)
                      ..++|.+.++.|.|..+.+...+...++..++.++.|++.||+ +||+.+..+..+.+++. ...+.++..... .-++.
T Consensus       217 ~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~  295 (355)
T TIGR00896       217 IGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVL  295 (355)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHH
Confidence            3557888888999999999999999998999999999999999 56667777777666665 444444333222 45678


Q ss_pred             HhHhhhhhhhhhh
Q 018113          135 GIATSLLFSAFES  147 (360)
Q Consensus       135 G~~~~~~~~~~~~  147 (360)
                      |++.+..++...+
T Consensus       296 g~~~g~~~~~~~~  308 (355)
T TIGR00896       296 GLGQGGAFPLALT  308 (355)
T ss_pred             HHhhhhHhHHHHH
Confidence            9998888777645

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.96  E-value=1.7e-07  Score=84.80  Aligned_cols=98  Identities=16%  Similarity=0.231  Sum_probs=70.9

Q ss_pred             HHHH-HHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc-----chHHHHHHHHH
Q 018113           60 VYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-----PQYKILMIGRI  132 (360)
Q Consensus        60 ~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~-----~~~~~l~~~r~  132 (360)
                      .|.. .+++|.++.+.+.+.....++..+++++.|++.||+|||+.+..+.....++. +....     ++...+....+
T Consensus       229 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (385)
T TIGR00710       229 APFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMM  308 (385)
T ss_pred             ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            4444 45789999999999888888888899999999999999999888877776654 33221     23445555677


Q ss_pred             HHHhHhhhhhhhhhhHHhhhc--cccch
Q 018113          133 LGGIATSLLFSAFESWLVAEH--NKRGF  158 (360)
Q Consensus       133 l~G~~~~~~~~~~~~~~i~~~--~~r~~  158 (360)
                      +.|++.+...+.... ...|.  ++|+.
T Consensus       309 ~~g~~~~~~~~~~~~-~~~~~~~~~~g~  335 (385)
T TIGR00710       309 FVGIGNSMISSIAMA-YALEDFPHVAGT  335 (385)
T ss_pred             HHHHHHHHHHHHHHH-HHhccCcccchH
Confidence            888888877776644 55554  34444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.95  E-value=2.9e-07  Score=83.61  Aligned_cols=149  Identities=13%  Similarity=0.026  Sum_probs=92.7

Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhh
Q 018113           62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSL  140 (360)
Q Consensus        62 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~  140 (360)
                      ...+.+|.++.+.|.+.....++..++++..+++.||.++|+++..+... ++.. +..+.++++...+..++.|++.+.
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~g~  309 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILIGALGGF  309 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence            45567899999999999999988889999999999999999888777533 3333 445567777777778889998887


Q ss_pred             hhhhhhhHHhhhc--cc--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHh
Q 018113          141 LFSAFESWLVAEH--NK--RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL  216 (360)
Q Consensus       141 ~~~~~~~~~i~~~--~~--r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (360)
                      ..+...+ .+.+.  ++  +|+..    +..+....++..++..+...+     +..+-++...+...+.+........ 
T Consensus       310 ~~~~~~~-~~q~~~~~~~~~g~~~----a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-  378 (393)
T PRK11195        310 FVVPMNA-LLQHRGHVLVGAGHSI----AVQNFNENLAMLLMLGLYSLL-----VKLGVPVVAVIVGFGLLVALAMALL-  378 (393)
T ss_pred             hhhhHHH-HHHhhCcccccchhHH----HHHhHHHHHHHHHHHHHHHHH-----HHcCCCHHHHHHHHHHHHHHHHHHH-
Confidence            7666544 44444  21  34432    233333344443444433322     2345565555555544433333333 


Q ss_pred             hhhccc
Q 018113          217 SSWTEN  222 (360)
Q Consensus       217 ~~~~~~  222 (360)
                      +++.|+
T Consensus       379 ~~~~~~  384 (393)
T PRK11195        379 WRWHRR  384 (393)
T ss_pred             HHHHHh
Confidence            444443

>TIGR01272 gluP glucose/galactose transporter

Probab=98.95  E-value=2.2e-07  Score=81.38  Aligned_cols=135  Identities=13%  Similarity=0.137  Sum_probs=88.6

Q ss_pred             HHHHHHHH---hhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHH
Q 018113           58 PYVYYLYS---TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL  133 (360)
Q Consensus        58 ~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l  133 (360)
                      ...+...+   ++|+++++.+...+....+..++....+++.||+|+||.+..+..+..++. +....++... ..+-++
T Consensus       161 ~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l  239 (310)
T TIGR01272       161 SFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLA  239 (310)
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHH
Confidence            33444444   369999999999999999888999999999999999999888877776655 4444444332 335567


Q ss_pred             HHhHhhhhhhhhhhHHhhhccc-cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhh
Q 018113          134 GGIATSLLFSAFESWLVAEHNK-RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAA  204 (360)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~~~~~-r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~  204 (360)
                      .|++.+..+|...+....+..+ .+...+    .    ...+. +|..+.|.+.+.+.|..+  .+..+++.
T Consensus       240 ~g~~~s~i~P~~~s~a~~~~~~~~~~asa----i----~~~~~-~Gg~i~P~l~G~lad~~g--~~~a~~v~  300 (310)
T TIGR01272       240 LGLFNSIMFPTIFSLALNALGRHTSQGSG----I----LCLAI-VGGAIVPLLQGSLADCLG--IQLAFALP  300 (310)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhHH----H----HHHHH-hcchHHHHHHHHHHHhcc--chHHHHHH
Confidence            8999999999876623333322 222111    1    12233 666777777777776544  34455433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.94  E-value=3.9e-07  Score=82.32  Aligned_cols=165  Identities=17%  Similarity=0.208  Sum_probs=105.5

Q ss_pred             HHHHHHHhhhhhHHHHHHHHhhC-CChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc-c
Q 018113           46 YSLMMAGDWLQGPYVYYLYSTYG-FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-P  122 (360)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~-~  122 (360)
                      +++..........+.+...+|.| .+....+.+.+.+.+.=.+.-...+++..|+|.|+++.++.+..++=. +.+.. +
T Consensus       216 ~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~  295 (400)
T PF03825_consen  216 AFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD  295 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33444444444566677778887 677777877666666555555578999999999999999999988854 55555 4


Q ss_pred             hHHHHH----HHHHHHHhHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC--
Q 018113          123 QYKILM----IGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG--  196 (360)
Q Consensus       123 ~~~~l~----~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~--  196 (360)
                      +.+...    ....+.|+..+..+.+... ++.+..+++.    ....+++...+.+++|..++..+++++.|..+-+  
T Consensus       296 ~~~~~~~~~~l~q~lhG~tf~~~~~a~~~-yi~~~~p~~~----~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~  370 (400)
T PF03825_consen  296 PWPFIVALQLLGQLLHGLTFGLFHAASVR-YIDRIAPPEL----RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGM  370 (400)
T ss_pred             CcHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHhCCccc----hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhh
Confidence            544333    3356799999999888856 8877622222    1224444445566677788888888887765533  


Q ss_pred             --CchhhhhhHHHHHHHHHHH
Q 018113          197 --PVAPFDAAACFLAIGMVII  215 (360)
Q Consensus       197 --~~~~~~~~~~~~~~~~~~~  215 (360)
                        |...+.+.+.+.++..++.
T Consensus       371 ~~~~~~~~v~a~~~~~~~~~f  391 (400)
T PF03825_consen  371 FDWSAVFLVFAVMALVILVLF  391 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence              3334444444444333333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.94  E-value=7.3e-08  Score=80.33  Aligned_cols=129  Identities=19%  Similarity=0.121  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHHHHhhhh---hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHH
Q 018113           39 KNNYLLVYSLMMAGDWLQ---GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS  115 (360)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~  115 (360)
                      ||..+......+...+..   +.+.|++.+++|+|.+|...+.+...++..+ +++.|.+.||+|+|.++.++.+...+|
T Consensus         1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~G   79 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVG   79 (250)
T ss_pred             ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            455555555555555444   5669999999999999999999998887764 789999999999999999999999887


Q ss_pred             H-HHH--h-----cchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc-cccchhhHHHHHHHH
Q 018113          116 C-ITK--H-----SPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFS  168 (360)
Q Consensus       116 ~-l~~--~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~  168 (360)
                      . ...  .     .++++.+.+..++.|.+.+...+++...-+.+. ++||...+...+.++
T Consensus        80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~G  141 (250)
T PF06813_consen   80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFG  141 (250)
T ss_pred             HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHH
Confidence            6 322  2     246677777777777776665554433223333 789998887777666

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.94  E-value=5.2e-08  Score=85.30  Aligned_cols=148  Identities=14%  Similarity=0.203  Sum_probs=91.4

Q ss_pred             hHHHHHH-HHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc-------chHH--
Q 018113           57 GPYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-------PQYK--  125 (360)
Q Consensus        57 ~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~-------~~~~--  125 (360)
                      +..+|.+ .++|+.++.+.|.......+.+.+.-+.+|+++||+|.+|++......++++. +....       ++..  
T Consensus       238 s~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~  317 (417)
T COG2223         238 SAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVF  317 (417)
T ss_pred             HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHH
Confidence            3445554 45899999999988888888899999999999999999999998888887755 33332       2222  


Q ss_pred             --HHHHHHHHHHhHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhh
Q 018113          126 --ILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDA  203 (360)
Q Consensus       126 --~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~  203 (360)
                        .++...+..|+|.|..+-.. +.+-.  ++-|.       ..+.....| ++|+..-|..-+...+..+ .+...|+.
T Consensus       318 ~~~~l~l~~~~G~GnGsvfk~I-p~if~--~~~G~-------v~G~vga~G-~lGGf~lp~~~g~~~~~tg-~~~~~f~~  385 (417)
T COG2223         318 VAVFLALFVFAGLGNGSVFKMI-PVIFP--KETGA-------VTGIVGAIG-GLGGFFLPLAFGVSLDLTG-SYTGAFML  385 (417)
T ss_pred             HHHHHHHHHHhccCcchheeec-hHHHH--hhhhH-------HHHHHHHhc-cccccchhHHHHHHHHhcc-cHHHHHHH
Confidence              45556777777777665443 21211  11111       222111222 2444444444454455545 45566666


Q ss_pred             hHHHHHHHHHHHh
Q 018113          204 AACFLAIGMVIIL  216 (360)
Q Consensus       204 ~~~~~~~~~~~~~  216 (360)
                      ...+.+++..+..
T Consensus       386 ~~~~~~~a~v~~~  398 (417)
T COG2223         386 LLAFYLVALVLTW  398 (417)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666665555543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.93  E-value=2.6e-07  Score=84.24  Aligned_cols=86  Identities=15%  Similarity=0.138  Sum_probs=51.4

Q ss_pred             HHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-H-H-Hhc----chHHHHHHH-
Q 018113           59 YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I-T-KHS----PQYKILMIG-  130 (360)
Q Consensus        59 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l-~-~~~----~~~~~l~~~-  130 (360)
                      ++|.+.++ +.+............+.+.+..+++|+++||+|+||++.++.+...+.. . . ...    .+++.+.+. 
T Consensus       274 ~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~  352 (462)
T PRK15034        274 GFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVF  352 (462)
T ss_pred             HHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            35555544 2333333333344556678888999999999999999999887776644 2 1 221    234444333 


Q ss_pred             ---HHHHHhHhhhhhhhh
Q 018113          131 ---RILGGIATSLLFSAF  145 (360)
Q Consensus       131 ---r~l~G~~~~~~~~~~  145 (360)
                         -+..|+|.|..+-..
T Consensus       353 ~~l~~~~G~gngsvfk~i  370 (462)
T PRK15034        353 MGLFLTAGLGSGSTFQMI  370 (462)
T ss_pred             HHHHHHhcccchHHHHhh
Confidence               344566666665333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.93  E-value=8.7e-08  Score=89.23  Aligned_cols=144  Identities=14%  Similarity=0.041  Sum_probs=79.7

Q ss_pred             HHHH-HHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchH-------HHHHHHHHHHHHH-HHHhcchHHHHHHH
Q 018113           60 VYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKR-------ACVTYCLTYILSC-ITKHSPQYKILMIG  130 (360)
Q Consensus        60 ~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~-------~l~~~~~~~~~~~-l~~~~~~~~~l~~~  130 (360)
                      +|.+ .+++|.+..+.+.+.+...++..++.++.|+++||+|||+       .......+.++.. +....++.+...+.
T Consensus       275 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~  354 (476)
T PLN00028        275 IAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVV  354 (476)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            4444 5678999999999988888989999999999999998762       2222222222322 33445555555555


Q ss_pred             HHHHHhHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHH
Q 018113          131 RILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL  208 (360)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  208 (360)
                      -++.+++.+...+...+ ++.+.  ++++...+.        ...+..+|+.+++.+.+.  + ...+|+..|...+++.
T Consensus       355 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g~--------~~~~g~lg~~i~~~l~~~--~-~~~~y~~~f~~~~~~~  422 (476)
T PLN00028        355 MILFSIFVQAACGATFG-IVPFVSRRSLGVISGL--------TGAGGNVGAVLTQLLFFT--G-SSYSTETGISLMGVMI  422 (476)
T ss_pred             HHHHHHHHHHhhhhhcc-cCcccChhhchhhhhh--------hhccccHHHHHHHHHHHh--c-CCccHhhHHHHHHHHH
Confidence            55666655444343322 34443  334332211        122334566666554331  1 1124555666655544


Q ss_pred             HHHHHHH
Q 018113          209 AIGMVII  215 (360)
Q Consensus       209 ~~~~~~~  215 (360)
                      +++.+..
T Consensus       423 ~i~~~~~  429 (476)
T PLN00028        423 IACTLPV  429 (476)
T ss_pred             HHHHHHH
Confidence            4444443

>PRK10054 putative transporter; Provisional

Probab=98.93  E-value=1.7e-07  Score=85.09  Aligned_cols=139  Identities=9%  Similarity=0.052  Sum_probs=89.2

Q ss_pred             HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc-chHHHHHHHHHHHHhHhhhhh
Q 018113           65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-PQYKILMIGRILGGIATSLLF  142 (360)
Q Consensus        65 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~-~~~~~l~~~r~l~G~~~~~~~  142 (360)
                      ++.+.+....+.............+.+.|++.||+++|+.+..+..+..++. ...+. ++.+.+.+..++.|++.+...
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence            4556666677777777666566666788999999999999998887777766 44443 567777778899999988776


Q ss_pred             hhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHH
Q 018113          143 SAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII  215 (360)
Q Consensus       143 ~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (360)
                      |.... ++.+.   +.|+...+    ..+    . ..+|..++|.+++.+.|+.+.  ...|++.+....+..++.
T Consensus       317 p~~~~-~~~~~~p~~~~~~~~~----~~~----~-~~~G~~~Gp~~~G~l~~~~g~--~~~~~~~~~~~~~~~~~~  380 (395)
T PRK10054        317 PGEYM-LIDHIAPPGMKASYFS----AQS----L-GWLGAAINPLVSGVILTTLPP--WSLFVILALAIVAAWLLM  380 (395)
T ss_pred             hhHHH-HHHHhCCcccceehHh----HHH----H-HHHHHHHHHHHHHHHHHHcCh--hhHHHHHHHHHHHHHHHH
Confidence            66543 56554   34444211    111    1 225666777777777776543  344555544444444444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.92  E-value=2.3e-07  Score=85.91  Aligned_cols=149  Identities=11%  Similarity=0.010  Sum_probs=79.6

Q ss_pred             hHHHHHHHHh-hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhh--cchHHHH-HHHHHHHHHH-HHHh--cchHHHHHH
Q 018113           57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACV-TYCLTYILSC-ITKH--SPQYKILMI  129 (360)
Q Consensus        57 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~--Grr~~l~-~~~~~~~~~~-l~~~--~~~~~~l~~  129 (360)
                      ..+.|.+.++ .|.+..+.+.......++..++.++.|+++||+  |||+... ....+..++. ....  .++.....+
T Consensus       273 ~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  352 (452)
T PRK11273        273 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMA  352 (452)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHH
Confidence            4557776654 789999988888777777778888999999999  5554322 2222223332 2212  234444444


Q ss_pred             HHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHH
Q 018113          130 GRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAAC  206 (360)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~  206 (360)
                      +.++.|.+........ .++..|.   ++|+...+....       .++..+...+|.+.+.+.|+.+  |+..|.+...
T Consensus       353 ~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~-------~~~~g~~~~g~~v~g~l~~~~g--~~~~f~~~~~  422 (452)
T PRK11273        353 CMIVIGFLIYGPVMLI-GLHALELAPKKAAGTAAGFTGL-------FGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIG  422 (452)
T ss_pred             HHHHHHHHHHhHHHHH-HHHHHHHcChhhhhhHHHHHHH-------HHHHHHHHhhhhhHHHHHHHhc--chHHHHHHHH
Confidence            4555555432221221 2234444   445553333322       2221122335666666666655  5566666655


Q ss_pred             HHHHHHHHH
Q 018113          207 FLAIGMVII  215 (360)
Q Consensus       207 ~~~~~~~~~  215 (360)
                      ..+++.+..
T Consensus       423 ~~~~~~~~~  431 (452)
T PRK11273        423 GSILAVILL  431 (452)
T ss_pred             HHHHHHHHH
Confidence            555554444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.92  E-value=7.8e-08  Score=87.50  Aligned_cols=124  Identities=19%  Similarity=0.291  Sum_probs=84.2

Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH--HHHhcchHHHHHHHHHHHHhHhh
Q 018113           62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--ITKHSPQYKILMIGRILGGIATS  139 (360)
Q Consensus        62 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~--l~~~~~~~~~l~~~r~l~G~~~~  139 (360)
                      ++.+++|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.....+..  +....++.+.+.+..++.|...+
T Consensus       264 ~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (405)
T TIGR00891       264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQ  343 (405)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHc
Confidence            4446789999999999888888888999999999999999999888877654432  33345566666666677776666


Q ss_pred             hhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 018113          140 LLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS  194 (360)
Q Consensus       140 ~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~  194 (360)
                      ...+.... ++.|.   ++|++..+...       .++ .+|..++|.+.+.+.++.|
T Consensus       344 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~-------~~~-~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       344 GIWGILPK-HLGEYFPTDQRAAGLGFTY-------QLG-NLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             cchhhHHH-HHhhhCCcchhHHHhhHHH-------HHH-HHHHHHHHHHHHHHHHhcc
Confidence            55555534 66665   45555333222       222 2556666777777766555

>PRK11043 putative transporter; Provisional

Probab=98.91  E-value=2.6e-07  Score=84.23  Aligned_cols=105  Identities=11%  Similarity=0.132  Sum_probs=70.5

Q ss_pred             HHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH----HHHh--cchHHHHHHHH
Q 018113           58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKH--SPQYKILMIGR  131 (360)
Q Consensus        58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~----l~~~--~~~~~~l~~~r  131 (360)
                      .+.|.+.+++|.++.+.|.......++..+++...+++.||+|+|+.........+++.    ....  .++....+...
T Consensus       224 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (401)
T PRK11043        224 TGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPF  303 (401)
T ss_pred             HHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence            34667778899999999987776666667777788999999999997766555444432    1122  34555556666


Q ss_pred             HHHHhHhhhhhhhhhhHHhhhc--cccchhhHHH
Q 018113          132 ILGGIATSLLFSAFESWLVAEH--NKRGFEQQWL  163 (360)
Q Consensus       132 ~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~  163 (360)
                      .+.|++.+..++.... ...|.  ++|+...+..
T Consensus       304 ~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g~~  336 (401)
T PRK11043        304 CVMAAANGAIYPIVVA-QALRPFPQATGKAAALQ  336 (401)
T ss_pred             HHHHHHHHHHHHHHHH-HHhhhCcccChHHHHHH
Confidence            7788888888777645 44343  4566644443

>PRK10133 L-fucose transporter; Provisional

Probab=98.91  E-value=2.6e-07  Score=85.05  Aligned_cols=87  Identities=14%  Similarity=0.106  Sum_probs=68.9

Q ss_pred             HHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhh
Q 018113           64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLF  142 (360)
Q Consensus        64 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~  142 (360)
                      ++++|.++.+.+..+....++..++..+.|++.||+|+|+++..+..+..++. +..+.++. ..+..-.+.|++.+..+
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~  365 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQY  365 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHH
Confidence            34689999999999999999889999999999999999999988877766655 44444543 23455678899999999


Q ss_pred             hhhhhHHhhh
Q 018113          143 SAFESWLVAE  152 (360)
Q Consensus       143 ~~~~~~~i~~  152 (360)
                      |...+ ...|
T Consensus       366 P~~~s-~a~~  374 (438)
T PRK10133        366 PTIFS-LGIK  374 (438)
T ss_pred             HHHHH-HHHc
Confidence            98866 4444

>TIGR00901 2A0125 AmpG-related permease

Probab=98.91  E-value=1.2e-07  Score=84.86  Aligned_cols=104  Identities=16%  Similarity=0.126  Sum_probs=76.5

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHH-HHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHh-c----------ch
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGF-GSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH-S----------PQ  123 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~-~----------~~  123 (360)
                      ....|...+++|.++++.+.+..... +...++.+++|++.||+|||+.+..+.++.+++. +..+ +          ++
T Consensus       229 ~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (356)
T TIGR00901       229 TVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPH  308 (356)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence            34566666779999999998776544 4566777789999999999999888888777655 3332 2          34


Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhH
Q 018113          124 YKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQ  161 (360)
Q Consensus       124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~  161 (360)
                      .+.+..+.++.+++.+..++...+ ++.|.   ++|++..+
T Consensus       309 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~p~~~~g~~~g  348 (356)
T TIGR00901       309 LLMLFLTITLEAVTGGLGTVAFVA-FLSKLSNPKFGATQMA  348 (356)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCCccHHHHH
Confidence            567777888999998888887755 77665   55665333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.90  E-value=2.3e-07  Score=84.52  Aligned_cols=148  Identities=14%  Similarity=0.040  Sum_probs=89.1

Q ss_pred             HHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhh-hhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD-KQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~D-r~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      .+.|...+|.+.++.+.+.+.+...+.......+.+++.| |++.|+.+..+..+.+++. +.++.++++.+.+...+.|
T Consensus       229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  308 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFY  308 (400)
T ss_pred             HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3467766776667788888877766655555555566665 5676777777777777766 5567788877777788888


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccC-CC-CchhhhhhHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS-LG-PVAPFDAAACFLAI  210 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~-~~-~~~~~~~~~~~~~~  210 (360)
                      ++.+...|.... ++.|.   ++|+...+..    +....    +|..+++.+++.+.|+.+ .+ ....+.....+.++
T Consensus       309 ~g~~~~~p~~~~-~~~~~~p~~~~g~~~g~~----~~~~~----~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~  379 (400)
T PRK11646        309 IGSIIAEPARET-LSASLADARARGSYMGFS----RLGLA----LGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLI  379 (400)
T ss_pred             HHHHHHHccHHH-HHHhcCCcccchhhhhHH----HHHHH----HHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence            888777666644 66554   5566643332    22223    455555556665555421 12 13344444444444


Q ss_pred             HHHH
Q 018113          211 GMVI  214 (360)
Q Consensus       211 ~~~~  214 (360)
                      ....
T Consensus       380 ~~~~  383 (400)
T PRK11646        380 TLLA  383 (400)
T ss_pred             HHHH
Confidence            4333

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.90  E-value=3.2e-07  Score=84.54  Aligned_cols=147  Identities=14%  Similarity=0.062  Sum_probs=80.1

Q ss_pred             HHHHHHH-HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhh--cchHHH-HHHHHHHHHH--HHHH-hcchHHHHHHH
Q 018113           58 PYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRAC-VTYCLTYILS--CITK-HSPQYKILMIG  130 (360)
Q Consensus        58 ~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~--Grr~~l-~~~~~~~~~~--~l~~-~~~~~~~l~~~  130 (360)
                      .+.|.+. +++|.|..+.+...+...+++.++.++.|+++||+  ++|+.. ....+...+.  .+.. ...+.......
T Consensus       264 ~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (434)
T PRK11663        264 DWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAAC  343 (434)
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence            4456665 67899999999888888888889999999999999  333332 2221111111  1111 12233333333


Q ss_pred             HHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHH
Q 018113          131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF  207 (360)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  207 (360)
                      .+..|++........ ...+.|.   ++|+...+..+       ..++ +|..++|.+.+.+.++.+  |...|...+.+
T Consensus       344 ~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~-------~~~~-~g~~~~p~~~g~l~~~~g--~~~~f~~~~~~  412 (434)
T PRK11663        344 FFTIGFFVFGPQMLI-GMAAAECSHKEAAGAATGFVG-------LFAY-LGAALSGYPLAKVLEIWH--WTGFFVVISIA  412 (434)
T ss_pred             HHHHHHHHhhHHHHH-HHHHHhcccHhhHHhHHHHHH-------HHHH-HHHHHhcccHHHHHHhcc--cHHHHHHHHHH
Confidence            444444322211111 2244554   34444332222       2222 566777777777777644  55667666666


Q ss_pred             HHHHHHHH
Q 018113          208 LAIGMVII  215 (360)
Q Consensus       208 ~~~~~~~~  215 (360)
                      .++..+..
T Consensus       413 ~~~~~~~~  420 (434)
T PRK11663        413 AGISALLL  420 (434)
T ss_pred             HHHHHHHH
Confidence            65555444

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.89  E-value=4.2e-08  Score=85.99  Aligned_cols=173  Identities=15%  Similarity=0.044  Sum_probs=113.6

Q ss_pred             hHHHHHHHHHHHHHhhhhhHH---HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHH
Q 018113           39 KNNYLLVYSLMMAGDWLQGPY---VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS  115 (360)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~  115 (360)
                      +-.+.++..-....|+.++..   ...-.+++|++..++........+.+.+++.+.|++.||+|.|+++..+.++..+.
T Consensus       252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~  331 (438)
T COG2270         252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIA  331 (438)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHH
Confidence            334444555556667777433   22334599999999999888888889999999999999999999999999999886


Q ss_pred             H-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 018113          116 C-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD  191 (360)
Q Consensus       116 ~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~  191 (360)
                      + ...+......+.++..+.|...|..+....+ +..+.   ++.++.    .+.+++.--    ....++|++.+.+.+
T Consensus       332 ~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRS-y~~~lvp~~k~~~f----Fglyaltgr----a~S~~gp~lv~v~t~  402 (438)
T COG2270         332 ALYLIFLEGELDFWILGLLVGTSLGGAQASSRS-YLARLVPKGKEGRF----FGLYALTGR----AASFLGPFLVAVITQ  402 (438)
T ss_pred             HHHHHHccccHHHHHHHHHHHHhcchHHHHHHH-HHHHhCCCccccce----eehhhhhhh----HHHHHHHHHHHHHHH
Confidence            6 4444555666777889999999999999988 77765   333332    223333322    334555555554444


Q ss_pred             ccCCCCchhhhhhHHHHHHHHHHHhhhhccc
Q 018113          192 SFSLGPVAPFDAAACFLAIGMVIILSSWTEN  222 (360)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (360)
                      ..+ .-|.-+....++..+..... .+.|++
T Consensus       403 iTg-~~r~g~~~i~vll~iGl~~L-~~v~~~  431 (438)
T COG2270         403 ITG-SSRAGVLSIIVLLLIGLLLL-LRVKVP  431 (438)
T ss_pred             Hhc-chhhHHHHHHHHHHhhHhhE-EeecCC
Confidence            333 24444544444444444444 444443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.88  E-value=9.9e-07  Score=79.60  Aligned_cols=118  Identities=14%  Similarity=0.088  Sum_probs=71.7

Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHH-H-HH--Hh-cchHHHHHHHHHHHHh
Q 018113           62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS-C-IT--KH-SPQYKILMIGRILGGI  136 (360)
Q Consensus        62 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~-~-l~--~~-~~~~~~l~~~r~l~G~  136 (360)
                      ...+++|.++.+.|.......+...++.++.|++.||+|||+.+..+.....+. . +.  .. ..+.+...++-.+.+.
T Consensus       220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (377)
T PRK11102        220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG  299 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            344568999999999999888888899999999999999999998887765442 2 21  22 2344444444444444


Q ss_pred             HhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018113          137 ATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN  187 (360)
Q Consensus       137 ~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  187 (360)
                      +.+...+.... ++.|.  ++++...+.       .......+|..+++.++.
T Consensus       300 ~~~~~~~~~~~-~~~~~~~~~~g~~~~~-------~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        300 CVSMISSNAMA-VILDEFPHMAGTASSL-------AGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHhhHHHHH-HHhccccccchHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence            44444444433 44443  344442222       222333455555555543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.88  E-value=3.8e-07  Score=80.00  Aligned_cols=152  Identities=16%  Similarity=0.128  Sum_probs=94.1

Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhh--cchHHHHHHHHHH-HHHH-HHHhcc--hHHHHHHHHHHHH
Q 018113           62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACVTYCLTY-ILSC-ITKHSP--QYKILMIGRILGG  135 (360)
Q Consensus        62 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~--Grr~~l~~~~~~~-~~~~-l~~~~~--~~~~l~~~r~l~G  135 (360)
                      ++.|+.|.|..+.++..+..-.++..+.++.|+++||.  |||...-+...+. .++. ..-.++  |+.+..++-++.|
T Consensus       278 YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iG  357 (448)
T COG2271         278 YLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIG  357 (448)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Confidence            56678899999999999999999999999999999996  6666544433333 3333 223344  5577788888888


Q ss_pred             hHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII  215 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (360)
                      +..-+..-.. .....|..++..    ..+..+.....++..|...+....++..|..||.  ..|.+..+.++++.++.
T Consensus       358 f~IyGPqmLi-Gl~a~e~~pK~A----aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~--g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         358 FLIYGPQMLI-GLAAAEFVPKKA----AGTATGFVGLFAYLIGAALAGLPLGYIADTWGWD--GGFIVLSIAALLAILLL  430 (448)
T ss_pred             HHHhhHHHHH-HHHHhccccHhh----ccchhchhhhHHHHhhHHhcCCcceeeEecCCCc--chHHHHHHHHHHHHHHH
Confidence            8765543222 323445422222    1122333334455457788888888887775555  44555444444444444


Q ss_pred             hhhhc
Q 018113          216 LSSWT  220 (360)
Q Consensus       216 ~~~~~  220 (360)
                      .+.+.
T Consensus       431 ~~~~~  435 (448)
T COG2271         431 LPVWN  435 (448)
T ss_pred             HHHHh
Confidence            44444

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.88  E-value=7.5e-07  Score=81.42  Aligned_cols=271  Identities=18%  Similarity=0.127  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHHhhhhh----HHHHHHHHhhCCChhhh-HHHHH----HHHHHHhhhhhhhhhhhhhhcchHHHHHHHHH
Q 018113           41 NYLLVYSLMMAGDWLQG----PYVYYLYSTYGFGKGEI-GQLFI----AGFGSSMLFGTIVGSLADKQGRKRACVTYCLT  111 (360)
Q Consensus        41 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~s~~~~-g~~~~----~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~  111 (360)
                      ......++..+..++..    +..+...+.++.+..+. +....    ...+...+.++..|.++||+|||..+......
T Consensus        22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~  101 (463)
T KOG2816|consen   22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG  101 (463)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence            34444455555555543    33444444444433322 22222    22455778888999999999999999999988


Q ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhH--hhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018113          112 YILSCITKHSPQYKILMIGRILGGIA--TSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG  186 (360)
Q Consensus       112 ~~~~~l~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  186 (360)
                      ..+...+..-+.++.++    +.|+.  .+.......+ +++|.   ++|....+.....+.        .+..++|.++
T Consensus       102 ~~l~~~~~~~~~~~~~~----~~~l~g~~~~~~s~~~a-~vadis~~~~R~~~~gll~~~~~--------~~~~~~p~~~  168 (463)
T KOG2816|consen  102 TILPALCLLFQGYWFFL----LLGLSGGFSAIFSVGFA-YVADISSEEERSSSIGLLSGTFG--------AGLVIGPALG  168 (463)
T ss_pred             HHHhHHHHHHHHHHHhh----hcccccchhhhhhhhhh-heeeccchhHHHHHHHHHHHHHH--------HHHhHHHHHH
Confidence            88866333323344433    33332  2223344434 67776   555554444443333        3444455555


Q ss_pred             hhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcch---------h-HHHHHHHHHH---HHhcchhHHHHH
Q 018113          187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESK---------D-LLTQFRGAAV---AIASDEKIALLG  253 (360)
Q Consensus       187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~---~~~~~~~~~~~~  253 (360)
                      +.+.+.  .+....|.+..+...+.........||+..++++.+         + ......+..+   ....+|..+.+.
T Consensus       169 ~~~~~~--~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~  246 (463)
T KOG2816|consen  169 GYLVKF--LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLL  246 (463)
T ss_pred             HHHHHh--cCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHH
Confidence            554443  344467788888777777777677777655444331         1 1111111111   222334444433


Q ss_pred             HHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHH-HHHhhcCCChhhHHHHHHHHHHHHHH
Q 018113          254 AIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLAS-RLMARSPPRVESYMQIVFVVSSVSLL  328 (360)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g-~l~dr~g~~~~~~~~~~~~~~~~~~~  328 (360)
                      ..................+.|.+..++.+.   +...+.......++..... .+...++.|+  .+..+...-.+...
T Consensus       247 l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~--~i~lGl~~~~~~~~  323 (463)
T KOG2816|consen  247 LVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKR--LISLGLLSEFLQLL  323 (463)
T ss_pred             HHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HhhHHHHHHHHHHH
Confidence            333332222221112134667777777766   3444555666666666555 6777777773  34444433333333

>PRK09669 putative symporter YagG; Provisional

Probab=98.87  E-value=1.7e-07  Score=86.63  Aligned_cols=111  Identities=15%  Similarity=0.110  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HH-Hh-cchHHHHHHHHHHHHhHhhhhhhhhhhHHh
Q 018113           74 IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT-KH-SPQYKILMIGRILGGIATSLLFSAFESWLV  150 (360)
Q Consensus        74 ~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~-~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i  150 (360)
                      .+.+.....+...++.+++++++||+|+|+.+..+.+...+.. .. .. .++.+.+.+..++.|++.+...+...+ ++
T Consensus       266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a-m~  344 (444)
T PRK09669        266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS-MF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            3445555556666777789999999999999988877665433 22 22 356667778888999999988777655 66


Q ss_pred             hhc---cc--cc-hhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018113          151 AEH---NK--RG-FEQQWLSITFSKAIFLGNGLVAILSGLF  185 (360)
Q Consensus       151 ~~~---~~--r~-~~~~~~~~~~~~~~~~g~~~g~~~~~~l  185 (360)
                      +|.   ++  .| +..+...+..+....+|.++|+.+++.+
T Consensus       345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l  385 (444)
T PRK09669        345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI  385 (444)
T ss_pred             HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            654   11  12 2233344455555555665555555443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.87  E-value=5.8e-06  Score=73.57  Aligned_cols=85  Identities=19%  Similarity=0.225  Sum_probs=65.6

Q ss_pred             hHH-HHHHHHh-hCCChhhhH-HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHH
Q 018113           57 GPY-VYYLYST-YGFGKGEIG-QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRI  132 (360)
Q Consensus        57 ~~~-~~~~~~~-~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~  132 (360)
                      -|+ .|++.+. .|++..|+. -++-...-.....-.+...+.|..|.|++++.+.+...+.. +.-+.++...+-+..+
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~  102 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQF  102 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHH
Confidence            377 6666664 899999986 34333333333444468899999999999999988887766 6778899999999999


Q ss_pred             HHHhHhhhh
Q 018113          133 LGGIATSLL  141 (360)
Q Consensus       133 l~G~~~~~~  141 (360)
                      ..|++.+..
T Consensus       103 ~yg~~~a~e  111 (412)
T PF01770_consen  103 FYGLATAAE  111 (412)
T ss_pred             HHHHHHHHH
Confidence            999988775

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.86  E-value=1.4e-07  Score=86.68  Aligned_cols=130  Identities=21%  Similarity=0.249  Sum_probs=93.1

Q ss_pred             hhhhHHHHHHHHh-hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc--chHHHHHH
Q 018113           54 WLQGPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS--PQYKILMI  129 (360)
Q Consensus        54 ~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~--~~~~~l~~  129 (360)
                      .......+++.++ .|.+ ...+.......+...+..+++++++||+|+|+.+..+.++.+++. +..+.  +|.+.+++
T Consensus       242 ~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  320 (428)
T PF13347_consen  242 ALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLI  320 (428)
T ss_pred             hhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3334444555554 4544 566777777888888888999999999999999999999998876 55554  48899999


Q ss_pred             HHHHHHhHhhhhhhhhhhHHhhhc------cccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018113          130 GRILGGIATSLLFSAFESWLVAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (360)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~~~------~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  185 (360)
                      ..++.|++.+..+....+ +++|.      +...+..+...+..+...-++.+++..+.+.+
T Consensus       321 ~~~l~gi~~~~~~~~~~a-~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~  381 (428)
T PF13347_consen  321 LFILAGIGYGAFFVIPWA-MLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL  381 (428)
T ss_pred             HHHHhHhhhccccccccc-ccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            999999999998877755 66654      11123455566666666666666666655443

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.85  E-value=3.1e-07  Score=83.11  Aligned_cols=145  Identities=13%  Similarity=0.003  Sum_probs=79.7

Q ss_pred             hHHHHHH-HHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchH--HHHHHHHH------HHHHH-HHHhcchHHH
Q 018113           57 GPYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKR--ACVTYCLT------YILSC-ITKHSPQYKI  126 (360)
Q Consensus        57 ~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~--~l~~~~~~------~~~~~-l~~~~~~~~~  126 (360)
                      ..+.|.+ .+++|.++.+.+.......+...++.++.|+++||+|||+  ........      ..+.. .....++...
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (399)
T TIGR00893       235 LTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYA  314 (399)
T ss_pred             HHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence            3445544 4568999999999988888888899999999999999996  11111111      11111 1112233344


Q ss_pred             HHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhh
Q 018113          127 LMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDA  203 (360)
Q Consensus       127 l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~  203 (360)
                      ......+.+.+.+ ..+.... ++.|.   ++|+...+....    .    ..+|..+++.+.+.+.+..+ ++...+..
T Consensus       315 ~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~g~~~~~~~~----~----~~~g~~~~~~i~g~l~~~~g-~~~~~~~~  383 (399)
T TIGR00893       315 ALALVALGFFGLG-AGAIGWA-LISDNAPGNIAGLTGGLINS----L----GNLGGIVGPIVIGAIAATTG-SFAGALMV  383 (399)
T ss_pred             HHHHHHHHHhchh-hhhHHHH-HHHhhcChhHHHHHHHHHHH----H----HHHhhhhhhHHhhhhccCCC-chhHHHHH
Confidence            4434444444443 4555534 66665   445553322222    2    22555666666666666544 13445555


Q ss_pred             hHHHHHHHH
Q 018113          204 AACFLAIGM  212 (360)
Q Consensus       204 ~~~~~~~~~  212 (360)
                      .+.+.++..
T Consensus       384 ~~~~~~~~~  392 (399)
T TIGR00893       384 VAALALIGA  392 (399)
T ss_pred             HHHHHHHHH
Confidence            544444433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.85  E-value=2.2e-06  Score=78.59  Aligned_cols=147  Identities=17%  Similarity=0.139  Sum_probs=89.2

Q ss_pred             HHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhc-----chHHHHHHHHHHHHHH-HHHh----cchHHHH
Q 018113           58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-----RKRACVTYCLTYILSC-ITKH----SPQYKIL  127 (360)
Q Consensus        58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~G-----rr~~l~~~~~~~~~~~-l~~~----~~~~~~l  127 (360)
                      +..|.+.+++|+++++.....+...+ -....++.|.++|-+-     ||+-++++.++.+++. ..+.    ..+....
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~   89 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA   89 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence            44678889999999999887777666 4456788999999762     4445555665554443 2322    2356666


Q ss_pred             HHHHHHHHhHhhhhhhhhhhHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHH
Q 018113          128 MIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAAC  206 (360)
Q Consensus       128 ~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~  206 (360)
                      .+.-++..+|.......+.+ ++.|. ++.....+..++.......+|+    +++..+++.+.+..+.+  ..|.+.+.
T Consensus        90 ~~~l~la~~g~a~~DV~aDa-~vvE~~~~~p~~~g~lqS~~~~~~~~G~----lv~~~l~G~l~~~~~~~--~~f~i~~~  162 (433)
T PF03092_consen   90 VVLLFLASFGYAFADVAADA-LVVELARREPESRGDLQSFVWGVRSVGS----LVGSLLSGPLLDSFGPQ--GVFLISAA  162 (433)
T ss_pred             HHHHHHHHHHHHHHHHhhhH-HHHHHhhcCCchhHHHHHHHHHHHHHHH----HHHHHhhhhhhhcCCCe--EEehHHHH
Confidence            66778888888888888867 77776 2221212333334443444444    55555555555554444  44555554


Q ss_pred             HHHHHH
Q 018113          207 FLAIGM  212 (360)
Q Consensus       207 ~~~~~~  212 (360)
                      +..+..
T Consensus       163 ~~~l~~  168 (433)
T PF03092_consen  163 LPLLML  168 (433)
T ss_pred             HHHHHH
Confidence            444443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.82  E-value=5.9e-07  Score=83.97  Aligned_cols=90  Identities=12%  Similarity=0.212  Sum_probs=70.2

Q ss_pred             HHHHHHHH-hhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHH--h--cchHHHHHHHH
Q 018113           58 PYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK--H--SPQYKILMIGR  131 (360)
Q Consensus        58 ~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~--~--~~~~~~l~~~r  131 (360)
                      .+.|.+.+ .+|.++.+.|.......++..++.++.|++.||+|||+.+..+..+.+++. +..  .  ..+.+.+....
T Consensus       276 ~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (485)
T TIGR00711       276 YLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQ  355 (485)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence            34565555 579999999999888888888999999999999999999999888877766 433  2  23456667778


Q ss_pred             HHHHhHhhhhhhhhhh
Q 018113          132 ILGGIATSLLFSAFES  147 (360)
Q Consensus       132 ~l~G~~~~~~~~~~~~  147 (360)
                      ++.|++.+...+....
T Consensus       356 ~l~g~g~~~~~~~~~~  371 (485)
T TIGR00711       356 FIRGFGMGCFFMPLTT  371 (485)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8899998887665534

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.82  E-value=6.4e-07  Score=83.96  Aligned_cols=120  Identities=21%  Similarity=0.089  Sum_probs=82.6

Q ss_pred             HHHH-HHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHh---cchHHHHHHHHHH
Q 018113           59 YVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH---SPQYKILMIGRIL  133 (360)
Q Consensus        59 ~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~---~~~~~~l~~~r~l  133 (360)
                      +.|. +++.+|.|+.+.|.......++..+++++.|++.||+|+|+.+..+.++.+++. +...   .++.+......++
T Consensus       281 ~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l  360 (495)
T PRK14995        281 LMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMAL  360 (495)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            3444 455689999999999988888888999999999999999999888888777665 3322   2455566777889


Q ss_pred             HHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 018113          134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG  183 (360)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~  183 (360)
                      .|++.+...+.... .+.+.   ++++...+    ..+....+|..+|..+.+
T Consensus       361 ~G~g~g~~~~~~~~-~~~~~~~~~~~g~~~~----~~~~~~~lG~~~G~ai~g  408 (495)
T PRK14995        361 LGFSAASALLASTS-AIMAAAPPEKAAAAGA----IETMAYELGAGLGIAIFG  408 (495)
T ss_pred             HHHhHHHHHHHHHH-HHHhcCCHHhcchHHH----HHHHHHHHHHHHHHHHHH
Confidence            99999888766644 33332   44555333    333333444444444443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.81  E-value=5.4e-07  Score=93.29  Aligned_cols=106  Identities=14%  Similarity=0.123  Sum_probs=81.6

Q ss_pred             HHHHHHhhCCChh-hhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhH
Q 018113           60 VYYLYSTYGFGKG-EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIA  137 (360)
Q Consensus        60 ~~~~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~  137 (360)
                      .+++.+++|.+.. +.|++.+...++..+++++.|+++||+++|+.+.++.+..+++. +..+.++.+.+++..++.|++
T Consensus       256 ~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  335 (1146)
T PRK08633        256 PAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFS  335 (1146)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3444567899998 89999888888888899999999999999999888888777766 556677888888888999999


Q ss_pred             hhhhhhhhhhHHhhhc---cccchhhHHHHHH
Q 018113          138 TSLLFSAFESWLVAEH---NKRGFEQQWLSIT  166 (360)
Q Consensus       138 ~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~  166 (360)
                      .+...+.... ++.+.   +.|+...+.....
T Consensus       336 ~~~~~~~~~~-~~~~~~p~~~rg~~~~~~~~~  366 (1146)
T PRK08633        336 AGLFIVPLNA-LIQFRAPEKELGKVLAANNFL  366 (1146)
T ss_pred             HHHhhHHHHH-HHhhcCCccchhhhhHHHHHH
Confidence            8887766644 66554   5566654444333

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.76  E-value=5.3e-07  Score=79.72  Aligned_cols=142  Identities=21%  Similarity=0.265  Sum_probs=87.4

Q ss_pred             hhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhh----hhcchHHHHHHHHHHH-HHH-HHHhcchHH--
Q 018113           54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACVTYCLTYI-LSC-ITKHSPQYK--  125 (360)
Q Consensus        54 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~Grr~~l~~~~~~~~-~~~-l~~~~~~~~--  125 (360)
                      ..+..+++++.++.|++....+.+-..+-+.+.+.+|+.|..+|    ||||||.++....... ++. +..++.+..  
T Consensus        49 A~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~  128 (498)
T KOG0637|consen   49 ALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLL  128 (498)
T ss_pred             HHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHH
Confidence            33457788888999999998888888888889999999999999    5899988877665544 355 555544333  


Q ss_pred             ---------------HHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccch-hhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018113          126 ---------------ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGF-EQQWLSITFSKAIFLGNGLVAILSGLFG  186 (360)
Q Consensus       126 ---------------~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~-~~~~~~~~~~~~~~~g~~~g~~~~~~l~  186 (360)
                                     .++++--+.=++....+..+.+ ++.|.   +++.+ ..    +.++....+|+.+|..+++   
T Consensus       129 lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra-~L~Dl~~~d~~~~~An----s~f~~f~avGnvLGY~~g~---  200 (498)
T KOG0637|consen  129 LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRA-LLADLARGDAKKTRAN----SVFSFFMAVGNVLGYALGS---  200 (498)
T ss_pred             hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHH-HHHHhccChhhhhccc----hhHHHHHHhcceeeeeccc---
Confidence                           2333334444455566666655 77765   22222 23    3344444444444444443   


Q ss_pred             hhhhcccCCCCchhhhhhHHHH
Q 018113          187 NLLVDSFSLGPVAPFDAAACFL  208 (360)
Q Consensus       187 ~~l~~~~~~~~~~~~~~~~~~~  208 (360)
                           +.+|+-..+|.....+.
T Consensus       201 -----y~~~~~~~~Ft~~~~~~  217 (498)
T KOG0637|consen  201 -----YLGLYKIFPFTLTTACD  217 (498)
T ss_pred             -----ccCceEEeehHHHHHHH
Confidence                 24455555565444333

>TIGR00895 2A0115 benzoate transport

Probab=98.75  E-value=3.8e-07  Score=82.73  Aligned_cols=101  Identities=16%  Similarity=0.086  Sum_probs=74.5

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCIT-KHSPQYKILMIGRILGG  135 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l~-~~~~~~~~l~~~r~l~G  135 (360)
                      ..+.|.+.+++|.++.+.+...+...++..++.++.|++.||+|||+......+......+. ...++.+......++.|
T Consensus       270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  349 (398)
T TIGR00895       270 TNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAG  349 (398)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence            34577888899999999999988888888899999999999999995544433333333333 33566677778889999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccch
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGF  158 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~  158 (360)
                      ++.+...+.... ++.|.   ++|+.
T Consensus       350 ~~~~~~~~~~~~-~~~~~~~~~~~g~  374 (398)
T TIGR00895       350 FFVNGGQSGLYA-LMALFYPTAIRAT  374 (398)
T ss_pred             HHHHHHHHHHHH-HHhhcCCHHHHHH
Confidence            998888777645 66765   44555

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.74  E-value=6e-07  Score=83.63  Aligned_cols=127  Identities=13%  Similarity=0.109  Sum_probs=78.3

Q ss_pred             HHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHH---h--cchHHHHHHHH
Q 018113           58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK---H--SPQYKILMIGR  131 (360)
Q Consensus        58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~---~--~~~~~~l~~~r  131 (360)
                      .+.+++.++..-+.+..+.+.+...+...++.++.++++||+|+|+.+..+..+..++. ...   +  .++.+.+++.-
T Consensus       252 ~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  331 (473)
T PRK10429        252 GFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAG  331 (473)
T ss_pred             hheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence            33344444444455566666666666677788889999999999999988887666544 221   1  34556667777


Q ss_pred             HHHHhHhhhhhhhhhhHHhhhc------cccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018113          132 ILGGIATSLLFSAFESWLVAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (360)
Q Consensus       132 ~l~G~~~~~~~~~~~~~~i~~~------~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  185 (360)
                      ++.|++.+...+...+ +++|.      +...+..+...+..+...-+|.++++.+.+.+
T Consensus       332 ~l~g~~~~~~~~~~~a-m~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~  390 (473)
T PRK10429        332 ILLNIGTALFWVLQVI-MVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV  390 (473)
T ss_pred             HHHHHHHHHHHHHHHH-HHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888887766544 66654      11112333444555555555555555554443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.74  E-value=4e-06  Score=72.27  Aligned_cols=146  Identities=15%  Similarity=0.076  Sum_probs=96.1

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhh-cchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG  134 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~  134 (360)
                      ...+|.+..|.|+|..+.|.+.+...+.....+.....+++|. ++|+..+...+.+.++. .+.+.+.-..++- -++.
T Consensus       228 ~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~ll  306 (395)
T COG2807         228 IGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLL  306 (395)
T ss_pred             HHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHH
Confidence            4559999999999999999999999888888888888888865 56666666666666666 3345443332222 4899


Q ss_pred             HhHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHH
Q 018113          135 GIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA  209 (360)
Q Consensus       135 G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  209 (360)
                      |+|.|..++.+.. ++.+..+....   ...........|+ +-+..+|.+.+.+.|..| +|..+........+
T Consensus       307 G~G~G~~F~laL~-li~~rs~~a~~---Aa~LSgmaQg~GY-llAa~GP~l~G~lhDa~g-sw~~~~~~l~~~~i  375 (395)
T COG2807         307 GLGQGGAFPLALT-LILLRSSDAAI---AAALSGMAQGVGY-LLAAFGPWLFGFLHDATG-SWSAPLVLLALATL  375 (395)
T ss_pred             hCccchHHHHHHH-HHHhhcCChHH---HHHHHHHhhhhhH-HHHhhhhhhHhHHHHhcC-ChHHHHHHHHHHHH
Confidence            9999999998866 66665222221   1122333334555 334567778887777544 45555544444333

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.72  E-value=1.8e-06  Score=79.67  Aligned_cols=156  Identities=12%  Similarity=-0.011  Sum_probs=80.9

Q ss_pred             HHHHHHHHh-hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHH---HHH-HHh--cchHHHHHHH
Q 018113           58 PYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL---SCI-TKH--SPQYKILMIG  130 (360)
Q Consensus        58 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~---~~l-~~~--~~~~~~l~~~  130 (360)
                      .+.|.+.++ .|.++.+.++......+.+.++.+..|+++||+|+|+....+......   +.+ ...  ..+.+.....
T Consensus       272 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (438)
T TIGR00712       272 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMIC  351 (438)
T ss_pred             HhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            456666654 799999999888888888888889999999999754322233222211   221 112  1233333334


Q ss_pred             HHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHH
Q 018113          131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF  207 (360)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  207 (360)
                      .+..|.+........ .....|.   ++|+...+..+..       ++..+..++|.+.+.+.++.+  +...+......
T Consensus       352 ~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~-------~~~gg~~~gp~l~G~l~~~~g--~~~~~~~~~~~  421 (438)
T TIGR00712       352 MIVIGFLIYGPVMLI-GLHALELAPKKAAGTAAGFTGLF-------GYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGG  421 (438)
T ss_pred             HHHHHHHHccHHHHH-HHHHHHhcChhheeeehhhhchH-------HHhhhhhhcchhHHHHHHhcc--chHHHHHHHHH
Confidence            444554322211111 1133443   4566644333222       221223455666666666545  44555555554


Q ss_pred             HHHHHHHHhhhhcccc
Q 018113          208 LAIGMVIILSSWTENY  223 (360)
Q Consensus       208 ~~~~~~~~~~~~~~~~  223 (360)
                      .+++........+|++
T Consensus       422 ~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       422 SILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            4444444444555543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11462 putative transporter; Provisional

Probab=98.69  E-value=6.8e-06  Score=76.20  Aligned_cols=123  Identities=8%  Similarity=-0.062  Sum_probs=66.2

Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcc--hHHHHHHHHHHHHhHh
Q 018113           62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP--QYKILMIGRILGGIAT  138 (360)
Q Consensus        62 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~--~~~~l~~~r~l~G~~~  138 (360)
                      ++.+...-++...+.+.....+...++.+++++++||+|+|+.+..+....++.. +..+.+  +...+.+.-++.|++.
T Consensus       253 y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  332 (460)
T PRK11462        253 YYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLH  332 (460)
T ss_pred             hhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence            3334333334444555666667777788889999999999998776555444422 322222  2223444456667776


Q ss_pred             hhhhhhhhhHHhhhc------cccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018113          139 SLLFSAFESWLVAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (360)
Q Consensus       139 ~~~~~~~~~~~i~~~------~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  185 (360)
                      +...+...+ +++|.      +...+..+...+..+...-+|.++|..+++.+
T Consensus       333 ~~~~~l~~~-m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i  384 (460)
T PRK11462        333 QLVTPIQWV-MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM  384 (460)
T ss_pred             HHHHHHHHH-HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655444333 44443      11122223333444445556666666555443

>TIGR00898 2A0119 cation transport protein

Probab=98.68  E-value=2e-06  Score=80.86  Aligned_cols=145  Identities=14%  Similarity=-0.005  Sum_probs=80.4

Q ss_pred             HHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchH--HHHHHHHHHHHhHhhh
Q 018113           64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQY--KILMIGRILGGIATSL  140 (360)
Q Consensus        64 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~--~~l~~~r~l~G~~~~~  140 (360)
                      .++++.+......+.   .+....+.++.+++.||+|||+.+..+.++.+++. +..+.++.  +......++.+++.+.
T Consensus       350 ~~~~~~~~~~~~~~~---~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (505)
T TIGR00898       350 LGNLGGNIYLDLFIS---GLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITS  426 (505)
T ss_pred             ccccCCChHHHHHHH---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence            345555533333322   33344556678999999999999999988888766 44554433  4444555666666666


Q ss_pred             hhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhh
Q 018113          141 LFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILS  217 (360)
Q Consensus       141 ~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (360)
                      .++.. ..+..|.   +.|+...+.....       + .+|.+++|.+.+ +.+   .++..++.+.+...++..+.. .
T Consensus       427 ~~~~~-~~~~~e~~p~~~r~~~~g~~~~~-------~-~ig~~i~p~i~~-~~~---~~~~~~~~~~~~~~~~~~~~~-~  492 (505)
T TIGR00898       427 AFQMV-YLYTAELYPTVVRNLGVGVCSTM-------A-RVGSIISPFLVY-LGE---KWLFLPLVLFGGLALLAGILT-L  492 (505)
T ss_pred             HHHHH-HHHhcccccHHHHhhhHhHHHHH-------H-HHHHHHHhHHHH-HHH---HHHhhHHHHHHHHHHHHHHHH-H
Confidence            65655 3377775   4455533322222       2 255556665555 222   123345555555544444444 4


Q ss_pred             hhccccCC
Q 018113          218 SWTENYGD  225 (360)
Q Consensus       218 ~~~~~~~~  225 (360)
                      ..||++++
T Consensus       493 ~lpet~~~  500 (505)
T TIGR00898       493 FLPETKGV  500 (505)
T ss_pred             cCcCCCCC
Confidence            55666543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.68  E-value=2.5e-05  Score=74.78  Aligned_cols=153  Identities=16%  Similarity=0.186  Sum_probs=101.0

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhh-hcchHHHHHHHHHHHHHH-HHHhcch--------HHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQ--------YKI  126 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~-l~~~~~~--------~~~  126 (360)
                      ..+..++.+.+|.+.++...++........+.+.++|.++|+ +||++.+..+.++..++. +.+++..        ...
T Consensus         8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            445566777899999988888888877788888899999996 599999999999988887 5444311        223


Q ss_pred             HHHHHHHHHhHhhhhhhhhhhHHhhhc-cc--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc-----CCCCc
Q 018113          127 LMIGRILGGIATSLLFSAFESWLVAEH-NK--RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF-----SLGPV  198 (360)
Q Consensus       127 l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~--r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~-----~~~~~  198 (360)
                      .+++-.+..+|.|+.-++..+ ...|. ++  +..    ....++..+..++ +|+.++..+..++.+..     .++|.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsa-f~gdqf~~~~~~~----~~s~F~~fY~~iN-iGSlis~~i~~~l~~~~~~fg~~~~~~  161 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSA-FGGDQFEERQLSL----RSRFFSFFYFAIN-AGSLISTIITPILRGDVGCFGCQDCYP  161 (654)
T ss_pred             HHHHHHHHHhhccccccCchh-hhHhhcCccchhH----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccCcchH
Confidence            556677778888888777744 77764 22  222    2234444444444 55565555555543221     13466


Q ss_pred             hhhhhhHHHHHHHHHHH
Q 018113          199 APFDAAACFLAIGMVII  215 (360)
Q Consensus       199 ~~~~~~~~~~~~~~~~~  215 (360)
                      ..|.+.+++.+++.+..
T Consensus       162 ~aF~i~~i~m~ia~lvf  178 (654)
T TIGR00926       162 LAFGVPAILMILALIVF  178 (654)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777776666655554

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.66  E-value=8.9e-06  Score=73.94  Aligned_cols=91  Identities=14%  Similarity=0.070  Sum_probs=59.6

Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHH-HH-HHHh--cchHHHHHHHHHHHHhH
Q 018113           62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-ITKH--SPQYKILMIGRILGGIA  137 (360)
Q Consensus        62 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~-~~-l~~~--~~~~~~l~~~r~l~G~~  137 (360)
                      .+.+.+|.++.+.+........+..+++.+.+++.||+|++............ .. ....  ..+.+.+.....+.|++
T Consensus       233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  312 (394)
T PRK11652        233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG  312 (394)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            33345899999999888777777777878889999999844333222222221 11 1122  34556677788899999


Q ss_pred             hhhhhhhhhhHHhhhc
Q 018113          138 TSLLFSAFESWLVAEH  153 (360)
Q Consensus       138 ~~~~~~~~~~~~i~~~  153 (360)
                      .+...+...+ +..|.
T Consensus       313 ~~~~~~~~~~-~~~~~  327 (394)
T PRK11652        313 AGMLFPLATS-GAMEP  327 (394)
T ss_pred             HHHHHHHHHH-HHHhh
Confidence            8888787755 55554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.66  E-value=4e-06  Score=78.05  Aligned_cols=151  Identities=13%  Similarity=-0.002  Sum_probs=81.9

Q ss_pred             HHHHHHH-HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHH--------HHHHHHH--HHHH-HHHh-cchH
Q 018113           58 PYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC--------VTYCLTY--ILSC-ITKH-SPQY  124 (360)
Q Consensus        58 ~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l--------~~~~~~~--~~~~-l~~~-~~~~  124 (360)
                      .++|.+. +++|.+..+.|...+...++..+++++.|+++||+++|+..        ..+....  ++.. .... ..+.
T Consensus       282 ~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (465)
T TIGR00894       282 TYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAF  361 (465)
T ss_pred             HHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            4466655 56899999999999999998999999999999998755321        1111111  1111 1122 2333


Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-Cchhhhh
Q 018113          125 KILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG-PVAPFDA  203 (360)
Q Consensus       125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~-~~~~~~~  203 (360)
                      ...++.-.+.+.+.+...+.... ...|..++  .   .....+.. +....+++.++|.+.+.+.+..+++ |...|.+
T Consensus       362 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~--~---~g~~~g~~-~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~  434 (465)
T TIGR00894       362 YLTIIILTLANAVSSGPLAGVLI-NSLDLAPR--F---LGFIKGIT-GLPGFIGGLIASTLAGNILSQDSKNVWLIVFLI  434 (465)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhh-chhhcChh--H---HHHHHHHH-HHHHHHHHHHHHHhhheeeCCCCchHHHHHHHH
Confidence            33344444444444433332211 22232222  1   22223322 2333477788888877766644333 6667776


Q ss_pred             hHHHHHHHHHHH
Q 018113          204 AACFLAIGMVII  215 (360)
Q Consensus       204 ~~~~~~~~~~~~  215 (360)
                      .+...++..++.
T Consensus       435 ~~~~~~i~~i~~  446 (465)
T TIGR00894       435 MAFVNILCVIFY  446 (465)
T ss_pred             HHHHHHHHHHHe
Confidence            666665555444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.65  E-value=2.2e-06  Score=76.32  Aligned_cols=102  Identities=25%  Similarity=0.285  Sum_probs=76.9

Q ss_pred             hhHHHHHH-HHhhCCC-hhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HH---HhcchHHHHHH
Q 018113           56 QGPYVYYL-YSTYGFG-KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKILMI  129 (360)
Q Consensus        56 ~~~~~~~~-~~~~g~s-~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~---~~~~~~~~l~~  129 (360)
                      ...+.|.+ .+++|.+ ..+.+.......+.+.+++++.|++.||+|+|+..........+.. ..   ...++....+.
T Consensus       225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (352)
T PF07690_consen  225 FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLII  304 (352)
T ss_dssp             HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHH
T ss_pred             hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            34556665 7889999 7889988999888888889999999999999887777766666544 22   33445677777


Q ss_pred             HHHHHHhHhhhhhhhhhhHHhhhc---cccch
Q 018113          130 GRILGGIATSLLFSAFESWLVAEH---NKRGF  158 (360)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~  158 (360)
                      .-++.|++.+...+.... ++.|.   ++|++
T Consensus       305 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~  335 (352)
T PF07690_consen  305 ALFLIGFGFGIVFPILFS-LIQELVPPEYRGT  335 (352)
T ss_dssp             HHHHHHHHHHHHCHHHHH-HHHCCCHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHhCCHHHHHH
Confidence            888899988888777755 66665   44555

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.64  E-value=4.4e-06  Score=76.22  Aligned_cols=159  Identities=18%  Similarity=0.107  Sum_probs=93.9

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHh----cchH--H---H
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH----SPQY--K---I  126 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~----~~~~--~---~  126 (360)
                      .-|...+.++-|++..+..++.........+...++..+.||+|||+.++.+..+..+.. +...    .+..  +   .
T Consensus       290 ~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~  369 (485)
T KOG0569|consen  290 FFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYL  369 (485)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            345778889999999999888888888888888899999999999999999998887754 3221    1112  1   1


Q ss_pred             HHHHHHHHHhHhhhhh-hhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhh
Q 018113          127 LMIGRILGGIATSLLF-SAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFD  202 (360)
Q Consensus       127 l~~~r~l~G~~~~~~~-~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~  202 (360)
                      .+++.++..++.+.-. |.. .-+.+|.   +.|....+.....    ..+++.+-...-+.+-..      ++. +.|.
T Consensus       370 ~i~~~~~~~~~f~~G~gpi~-~fi~aELf~~~~R~aa~s~~~~~----~w~~~fiv~~~fp~l~~~------~g~-~~fi  437 (485)
T KOG0569|consen  370 CIAAIFLFIISFAIGPGPIP-WFIGAELFPQSARSAAQSVATAV----NWLSNFIVGFAFPPLQNV------IGP-YVFI  437 (485)
T ss_pred             HHHHHHHHHHhhhcCCCchh-HHHHHHhCCccchHHHHHHHHHH----HHHHHHHHHHHHHHHHHH------hcc-hhhH
Confidence            2333344443333331 222 3246776   3343322222222    222222222222333222      222 4455


Q ss_pred             hhHHHHHHHHHHHhhhhccccCCCC
Q 018113          203 AAACFLAIGMVIILSSWTENYGDPS  227 (360)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~  227 (360)
                      ...+.+.+..+..+...||+++++.
T Consensus       438 lF~i~~~~~~i~~~~~lPETkgr~~  462 (485)
T KOG0569|consen  438 LFVIPLAIFLIYLYRYLPETKGRTP  462 (485)
T ss_pred             HHHHHHHHHHHHHHHhCcccCCCCH
Confidence            5566666666677688899987654

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.63  E-value=1.7e-06  Score=71.91  Aligned_cols=128  Identities=16%  Similarity=0.234  Sum_probs=79.9

Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH--HHHhcchHHHHHHHHHHHHhHhh
Q 018113           62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--ITKHSPQYKILMIGRILGGIATS  139 (360)
Q Consensus        62 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~--l~~~~~~~~~l~~~r~l~G~~~~  139 (360)
                      ..+++||+|+.+.+.+.+..+....+.+++.|.++||+|++-..+.+..+..+..  ...++  .+.-.++..+.|++.+
T Consensus       290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsys  367 (459)
T KOG4686|consen  290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYS  367 (459)
T ss_pred             HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHH
Confidence            4567899999999999999999999999999999999999998888877666633  33332  1222334455555433


Q ss_pred             ----hhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccC-CCCchhh
Q 018113          140 ----LLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS-LGPVAPF  201 (360)
Q Consensus       140 ----~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~-~~~~~~~  201 (360)
                          ..+|.. +.++.|. +-|...+..+...+        +|-.+.+++++.+.|..+ +.|.-.|
T Consensus       368 llAcslWP~v-a~~vpE~-qLGTaygf~qsIqN--------Lgla~i~Iiag~i~d~~g~y~~le~f  424 (459)
T KOG4686|consen  368 LLACSLWPCV-ASLVPEE-QLGTAYGFIQSIQN--------LGLAFIPIIAGFIADGDGSYDNLEAF  424 (459)
T ss_pred             HHHHHHhhhh-hhhCCHH-HhcchHHHHHHHHh--------hhhhHHhhhhheeecCCCchhhHHHH
Confidence                245555 3255554 33443333333333        444555555565555444 4443333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.57  E-value=2.3e-06  Score=80.45  Aligned_cols=156  Identities=14%  Similarity=0.019  Sum_probs=77.7

Q ss_pred             HHHHHHhhCCChhhhHH------------HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc----c
Q 018113           60 VYYLYSTYGFGKGEIGQ------------LFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS----P  122 (360)
Q Consensus        60 ~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~----~  122 (360)
                      .|.+.++.|.+..+.+.            ......++..++..+.++++||+|||+.++.+..+.+++. +..+.    +
T Consensus       311 ~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~  390 (502)
T TIGR00887       311 QKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS  390 (502)
T ss_pred             cHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            67777888887543211            1122223333455678999999999999988887776654 33321    1


Q ss_pred             hHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc------
Q 018113          123 QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF------  193 (360)
Q Consensus       123 ~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~------  193 (360)
                      +...+...-+...++.....+.. ..+.+|.   +.|+...+...       ..+. ++..+++.+.+.+.+..      
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~E~~p~~~R~~~~g~~~-------~~~~-~~~~~~~~~~~~l~~~~~~~~~~  461 (502)
T TIGR00887       391 THGFLAIYVLAQFFANFGPNATT-FIVPGEVFPTRYRSTAHGISA-------ASGK-AGAIIGQFGFLYLAQHGDPTKGY  461 (502)
T ss_pred             hhHHHHHHHHHHHHHhcCCCchh-hhhhhccCchhHHHHHHHHHH-------HHhh-hHHHHHHHHhhhhhccccccccc
Confidence            11111111111111111122322 2255675   44555333322       2222 45555555555555432      


Q ss_pred             --CCCCchhhhhhHHHHHHHHHHHhhhhccccCC
Q 018113          194 --SLGPVAPFDAAACFLAIGMVIILSSWTENYGD  225 (360)
Q Consensus       194 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (360)
                        +.+....+.+.+.+.++..+.. ...||++++
T Consensus       462 ~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~  494 (502)
T TIGR00887       462 PTGIWMGHVLEIFALFMFLGILFT-LLIPETKGK  494 (502)
T ss_pred             cccccchHHHHHHHHHHHHHHHHh-eEeccCCCC
Confidence              1233345555555555554443 456776654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.55  E-value=3.5e-05  Score=70.50  Aligned_cols=105  Identities=12%  Similarity=0.164  Sum_probs=60.0

Q ss_pred             HHHHHH-hhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HH--H---hcchHHHHHHHHH
Q 018113           60 VYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT--K---HSPQYKILMIGRI  132 (360)
Q Consensus        60 ~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~--~---~~~~~~~l~~~r~  132 (360)
                      .|.+.+ .+|.++.+.++.......+..+++.+.+.+.+|.++++..........++. +.  .   ..++++...+..+
T Consensus       241 ~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~  320 (413)
T PRK15403        241 SPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTS  320 (413)
T ss_pred             ChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            565554 569999999998777777677777777776655444444333222222222 11  1   2233434567788


Q ss_pred             HHHhHhhhhhhhhhhH-HhhhccccchhhHHHH
Q 018113          133 LGGIATSLLFSAFESW-LVAEHNKRGFEQQWLS  164 (360)
Q Consensus       133 l~G~~~~~~~~~~~~~-~i~~~~~r~~~~~~~~  164 (360)
                      +.++|.+...+..... +..+..++|...+...
T Consensus       321 l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~  353 (413)
T PRK15403        321 LYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLN  353 (413)
T ss_pred             HHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHH
Confidence            8888888887776431 1222244666444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.54  E-value=7.8e-06  Score=84.65  Aligned_cols=108  Identities=9%  Similarity=-0.127  Sum_probs=77.5

Q ss_pred             HHHHHH-HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc---------------
Q 018113           59 YVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS---------------  121 (360)
Q Consensus        59 ~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~---------------  121 (360)
                      .+|.+. +.+|.++.+.|.+.+...++..+++++.|+++||.++++.+..+.++.++.. ...+.               
T Consensus       247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  326 (1140)
T PRK06814        247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL  326 (1140)
T ss_pred             HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence            445554 4589999999999999999899999999999998887776666655554433 23332               


Q ss_pred             -----chHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHH
Q 018113          122 -----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITF  167 (360)
Q Consensus       122 -----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~  167 (360)
                           ++.+.+.+..++.|++.+...+...+ ++.+.   +.||+..+..+...
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~~~G~v~g~~~~~~  379 (1140)
T PRK06814        327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFA-ALQAWANPAHRARVIAANNVLN  379 (1140)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHhHHHHHH-HHHhhCCcccceeeeHHHHHHH
Confidence                 66777788888999998888776645 65554   66777555544433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.54  E-value=7e-06  Score=75.10  Aligned_cols=60  Identities=10%  Similarity=-0.008  Sum_probs=44.2

Q ss_pred             hHHHHHHHHhh--CCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHH-HHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTY--GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA-CVTYCLTYILSC  116 (360)
Q Consensus        57 ~~~~~~~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~-l~~~~~~~~~~~  116 (360)
                      ..++|.+.+++  |.+..+.+.......+++.++.++.|+++||++||+. ........+++.
T Consensus       262 ~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~  324 (412)
T TIGR02332       262 NIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW  324 (412)
T ss_pred             HHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH
Confidence            45688888875  5677788888888888888888899999999997775 333333333333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.54  E-value=2.3e-05  Score=71.60  Aligned_cols=125  Identities=10%  Similarity=0.056  Sum_probs=77.6

Q ss_pred             HHHHHHHHhh--CCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHH
Q 018113           58 PYVYYLYSTY--GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG  134 (360)
Q Consensus        58 ~~~~~~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~  134 (360)
                      .+++...++.  +.+....+...+.......++..+.|++.||+++|+++.++.....+.. +..+.++... ...-.+.
T Consensus       253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~  331 (410)
T TIGR00885       253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLC  331 (410)
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence            4455555554  3344444444555555566777789999999999999888888777766 5556555443 5666788


Q ss_pred             HhHhhhhhhhhhhHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 018113          135 GIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS  192 (360)
Q Consensus       135 G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~  192 (360)
                      |++.+..+|...+ ...+. .+|.+.       .+.+...+ .+|..+.|.+.+.+.|.
T Consensus       332 glf~s~~fp~i~s-l~~~~~g~~~~~-------~s~~l~~~-~~Gga~~p~l~G~~~d~  381 (410)
T TIGR00885       332 SAFMSLMFPTIYG-IALKGLGQDTKY-------GAAGLVMA-IIGGGIVPPLQGFIIDM  381 (410)
T ss_pred             HHHHHHHHHHHHH-HHHhhhhhhhhh-------hHHHHHHH-HhccchHHHHHHHHHHH
Confidence            8888888887756 44433 333221       11111111 26666677777777764

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.53  E-value=7.7e-06  Score=73.55  Aligned_cols=131  Identities=18%  Similarity=0.114  Sum_probs=74.4

Q ss_pred             HHHHHH-HHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcc-hHHHHHHHH-HH-HHHHH-HHh--cchHHHHHHH
Q 018113           58 PYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR-KRACVTYCL-TY-ILSCI-TKH--SPQYKILMIG  130 (360)
Q Consensus        58 ~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr-r~~l~~~~~-~~-~~~~l-~~~--~~~~~~l~~~  130 (360)
                      .+.|.. .+++|.++.+.+...+...++..++.++.|++.||.++ |+....... .. ..+.. ...  ..+.....+.
T Consensus       237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (379)
T TIGR00881       237 DWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLIC  316 (379)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHH
Confidence            344444 45689999999999888888888888999999998643 332222211 11 11221 122  2344555566


Q ss_pred             HHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCC
Q 018113          131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGP  197 (360)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~  197 (360)
                      .++.|.......+.... +..|.   ++|+...+.....        ..+|..+++.+.+.+.+..+|++
T Consensus       317 ~~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~--------~~~g~~~~~~~~g~l~~~~g~~~  377 (379)
T TIGR00881       317 LFALGFLVYGPQMLIGV-IASELAPKKAAGTAAGFVGFF--------AYLGGILAGLPLGYLADGFGWAG  377 (379)
T ss_pred             HHHHHHHHhhhhHHHHH-HHHHhcCcchhHHHHHHHHHh--------hhhhhhhhhhhHHHHHHhhcccc
Confidence            67777654444343322 55554   4455533322222        22555666666666666655553

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.53  E-value=3.1e-05  Score=69.60  Aligned_cols=103  Identities=9%  Similarity=0.057  Sum_probs=58.2

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcc---hHHHHH-HHHHHHHHH-HHHhcchHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR---KRACVT-YCLTYILSC-ITKHSPQYKILMIGR  131 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr---r~~l~~-~~~~~~~~~-l~~~~~~~~~l~~~r  131 (360)
                      ...+|.+.++.|.+.. .+.......+.+.++   .++++||.+|   |+.... ..+..++.. ..++.++.......-
T Consensus       212 ~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  287 (368)
T TIGR00903       212 AIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFI  287 (368)
T ss_pred             HHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence            4457888888888764 566666666656665   4677777654   343332 333333333 334444444444455


Q ss_pred             HHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHH
Q 018113          132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLS  164 (360)
Q Consensus       132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~  164 (360)
                      .+.|++....++.... +.+|.   +.|+...+...
T Consensus       288 ~l~~~~~~~~~~~~~~-~~~~~~p~~~rgt~~G~~~  322 (368)
T TIGR00903       288 GIAGLLMLPAYAIIMD-WIGKFCDKELHGKAAGAIG  322 (368)
T ss_pred             HHHHHhhhhhHHHHHH-HHHHhcchhhcCcccchhh
Confidence            5566665555555433 66775   56777544433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.49  E-value=1.1e-05  Score=73.05  Aligned_cols=117  Identities=15%  Similarity=0.103  Sum_probs=78.0

Q ss_pred             hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc--chHHHHHHHHHHHHhHhhhhhh
Q 018113           67 YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS--PQYKILMIGRILGGIATSLLFS  143 (360)
Q Consensus        67 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~--~~~~~l~~~r~l~G~~~~~~~~  143 (360)
                      .|.++.+..........+..++.++..++++|+|+|+++.++.++..++. +..+.  ++...+++..++.+++.+...+
T Consensus       267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~  346 (467)
T COG2211         267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP  346 (467)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence            44444455555555555445556789999999999999999999999976 44443  4778888889999999888877


Q ss_pred             hhhhHHhhhc------cccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 018113          144 AFESWLVAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSGL  184 (360)
Q Consensus       144 ~~~~~~i~~~------~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~  184 (360)
                      ..-+ +++|.      +.-.+..+...+.++...=+|.+++..+.++
T Consensus       347 l~wa-m~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~  392 (467)
T COG2211         347 LPWA-MVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW  392 (467)
T ss_pred             ccHH-HhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6644 65553      2222344445555555555555555544443

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.44  E-value=1.9e-06  Score=57.83  Aligned_cols=65  Identities=22%  Similarity=0.205  Sum_probs=54.7

Q ss_pred             HHHHHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHH
Q 018113           48 LMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY  112 (360)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~  112 (360)
                      +.....+...|++|...++.|+|+.|+|.+.++..+...+.++++|.++||+|+++..+......
T Consensus        11 ~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   11 FYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            33344455579999999999999999999999999999999999999999999988877765543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.39  E-value=2.1e-05  Score=73.24  Aligned_cols=147  Identities=19%  Similarity=0.140  Sum_probs=103.3

Q ss_pred             HHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcc--hHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHH
Q 018113           59 YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR--KRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (360)
Q Consensus        59 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr--r~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G  135 (360)
                      ++|...++.+.+..+.+.+.+...+...++-++.|+++|+...  +.+..++.+..+++. .+.+.+++..+...-.+.|
T Consensus       320 ~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG  399 (509)
T KOG2504|consen  320 YLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFG  399 (509)
T ss_pred             HHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3888999999999999999999999899999999999999983  444555555556655 6788999999999999999


Q ss_pred             hHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      +..|...... +.++.|.-.-.+    ....++ ...+..+++.+++|.+++.+.|..+ ++...|...+...+++.
T Consensus       400 ~~~g~~~~l~-~~i~~~~~g~~~----l~~a~G-l~l~~~gi~~l~gpPiag~~~d~tg-~Y~~~f~~~g~~~~~s~  469 (509)
T KOG2504|consen  400 FCVGSFSSLT-PVILVDLVGLEK----LSNAYG-LLLLFQGIGALVGPPIAGLLYDITG-NYDHAFYFCGLCFLLSA  469 (509)
T ss_pred             HHHHHHHHHH-HHHHHHHcChhh----cchHHH-HHHHHhHHHHHcCcccceeeeeccC-CeeeehhhcChHHHHHH
Confidence            9988875554 435555411111    112233 2233455888889998888777655 24445555544444333

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=3.9e-06  Score=73.11  Aligned_cols=138  Identities=18%  Similarity=0.138  Sum_probs=88.4

Q ss_pred             HHHHH-HHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHH--HHHHHHHH-HHHhcchHHHHHHHHHH
Q 018113           58 PYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTY--CLTYILSC-ITKHSPQYKILMIGRIL  133 (360)
Q Consensus        58 ~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~--~~~~~~~~-l~~~~~~~~~l~~~r~l  133 (360)
                      |.++. +.|++..+..++|..+.-..+...++..+.|.++||++..+.+...  .+..+..+ ...+++++..+++-++.
T Consensus       291 Ptlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~  370 (464)
T KOG3764|consen  291 PTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFG  370 (464)
T ss_pred             cccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHH
Confidence            55444 5567776666999888888888889999999999999954444433  33334344 55788999999998888


Q ss_pred             HHhHhhhhhhhhhhHH--hhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCc
Q 018113          134 GGIATSLLFSAFESWL--VAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPV  198 (360)
Q Consensus       134 ~G~~~~~~~~~~~~~~--i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~  198 (360)
                      .|++.+.......+.+  +.|. +..+.-  ... ......-.+..+|..++|.+++.+.+..|+.|.
T Consensus       371 l~~~i~~~dasl~P~l~~lvd~rh~s~~~--vYG-sVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl  435 (464)
T KOG3764|consen  371 LGFGIGLADASLIPTLGYLVDPRHVSGFN--VYG-SVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWL  435 (464)
T ss_pred             HHHHHHHHHHHHhhhhHHhcchhhccccc--eee-eHHHHHHHHHHHhhhccccccchheeehhHHHH
Confidence            8888777766555522  2222 222110  111 111222234456677788888888777676664

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.33  E-value=0.0011  Score=60.91  Aligned_cols=58  Identities=10%  Similarity=-0.122  Sum_probs=41.0

Q ss_pred             HHHHHHHhhCCC-----hhhhHHHHHHHHHHHhhh-hhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 018113           59 YVYYLYSTYGFG-----KGEIGQLFIAGFGSSMLF-GTIVGSLADKQGRKRACVTYCLTYILSC  116 (360)
Q Consensus        59 ~~~~~~~~~g~s-----~~~~g~~~~~~~~~~~~~-~~~~G~l~Dr~Grr~~l~~~~~~~~~~~  116 (360)
                      .+-++.+.+.++     ...+.++.+...+...+. .++.+++++|++|++++-.....+..-.
T Consensus        25 iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f   88 (472)
T TIGR00769        25 ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFF   88 (472)
T ss_pred             HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHH
Confidence            344566666663     346677777776655555 6789999999999999888766665543

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.32  E-value=8.2e-05  Score=64.44  Aligned_cols=96  Identities=25%  Similarity=0.371  Sum_probs=75.0

Q ss_pred             hHHHHHHHHhhCCCh--hhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcch--HHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGK--GEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQ--YKILMIGR  131 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~--~~~l~~~r  131 (360)
                      .+..+...++++.+.  .+.+...+...+...+..++.|.++||+|||+.+..+......+. +..+.++  .+.+.+.|
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (338)
T COG0477          22 SPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILR  101 (338)
T ss_pred             HHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            455777778877666  477888888888777877899999999999988888876644444 5555554  88999999


Q ss_pred             HHHHhHhhhhhhhhhhHHhhhc
Q 018113          132 ILGGIATSLLFSAFESWLVAEH  153 (360)
Q Consensus       132 ~l~G~~~~~~~~~~~~~~i~~~  153 (360)
                      +.+|++.+...+.... ++.|.
T Consensus       102 ~~~g~~~~~~~~~~~~-~~~~~  122 (338)
T COG0477         102 LLQGLGGGGLLPVASA-LLSEW  122 (338)
T ss_pred             HHHHhhhHHHHHHHHH-HHHHh
Confidence            9999999888777755 77776

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.31  E-value=3e-05  Score=69.59  Aligned_cols=59  Identities=17%  Similarity=0.239  Sum_probs=46.5

Q ss_pred             HHHHHHH-HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 018113           58 PYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC  116 (360)
Q Consensus        58 ~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~  116 (360)
                      .+.|.+. +++|.++.+.+...+...+.+.++.++.|+++||+|||+.+..+......+.
T Consensus       246 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       246 SIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGA  305 (366)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHH
Confidence            3344444 5689999999988888888888888899999999999988877766665544

>TIGR00788 fbt folate/biopterin transporter

Probab=98.29  E-value=1.2e-05  Score=74.67  Aligned_cols=117  Identities=16%  Similarity=0.064  Sum_probs=79.5

Q ss_pred             HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHH-h---------cchHHHHHHHHHH
Q 018113           65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK-H---------SPQYKILMIGRIL  133 (360)
Q Consensus        65 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~-~---------~~~~~~l~~~r~l  133 (360)
                      ++.|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++. ... .         .++.+.+....++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            5789999999999888888888888899999999999999999999888865 221 1         1333345556678


Q ss_pred             HHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018113          134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG  186 (360)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  186 (360)
                      .+++.+..+..... ++.+.   +.++...+...+..    ++|..++..+++.+.
T Consensus       361 ~~~~~g~~~~~~~~-~~~~~~p~~~egt~~al~~s~~----~lg~~v~~~~gg~l~  411 (468)
T TIGR00788       361 AEVLAQLKFMPFLV-LLARLCPSGCESSVFALLASIL----HLGSSVSGFLGVLLM  411 (468)
T ss_pred             HHHHHHHHHccHHH-HHHHhCCCCceehHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            88887777666644 66665   44555444444333    344444444444333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=0.00018  Score=65.37  Aligned_cols=76  Identities=16%  Similarity=0.090  Sum_probs=60.8

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhcc
Q 018113           78 FIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHN  154 (360)
Q Consensus        78 ~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~  154 (360)
                      ..+-+....+.+.+.+.+.|+.|.|..++++......--+..+-+|-+.++.+..+.|+|.+..+..... +++|+.
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~-ylt~~s  131 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGG-YLTSNS  131 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccce-ehhhcC
Confidence            4555555667777899999999999999999888877555555567778899999999999988777745 888873

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.20  E-value=9.2e-06  Score=55.03  Aligned_cols=71  Identities=14%  Similarity=0.143  Sum_probs=63.3

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKIL  127 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l  127 (360)
                      +|.+|.+.+|.++|.++.|++.+..+++..++++...++.++..+++.+..+.+...+.. .+++.++.+.+
T Consensus        12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen   12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            688999999999999999999999999999999999999999888888999988888877 78887776654

Note that many members are hypothetical proteins.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.19  E-value=0.00086  Score=59.46  Aligned_cols=174  Identities=21%  Similarity=0.196  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHhhhhhHH-HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhh-hhcchHHHHHHHHHHHHHH-H
Q 018113           41 NYLLVYSLMMAGDWLQGPY-VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD-KQGRKRACVTYCLTYILSC-I  117 (360)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~D-r~Grr~~l~~~~~~~~~~~-l  117 (360)
                      +++...++..+....+-+. -|+=-|-||++..|...+......+..++-...|++.. |.++|+.-.+++....++. +
T Consensus       212 ~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l  291 (403)
T PF03209_consen  212 RFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL  291 (403)
T ss_pred             HHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence            3444444444444444333 44555679999999887776666655444446777655 7888888888888877765 2


Q ss_pred             ---HHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 018113          118 ---TKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD  191 (360)
Q Consensus       118 ---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~  191 (360)
                         .+..++.+.+...-++.|++.|.......+ ..-+.   ++.|...+.+...+.....+|..+|..+-........+
T Consensus       292 ii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals-~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~  370 (403)
T PF03209_consen  292 IILAGPLGSPWLFRPGVFLLGLGNGLFTVGALS-LMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN  370 (403)
T ss_pred             HHHHHhcccchHHHHHHHHHHHhhhHHHHHHHH-HHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               355678889999999999999988776655 33333   45556566555555555444444444333322222111


Q ss_pred             ccCCCCchhhhhhHHHHHHHHHHH
Q 018113          192 SFSLGPVAPFDAAACFLAIGMVII  215 (360)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~  215 (360)
                      .....+...|.+-+.+.+++.++.
T Consensus       371 ~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  371 SPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHH
Confidence            112233345555555555555444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.17  E-value=0.0053  Score=55.90  Aligned_cols=70  Identities=13%  Similarity=-0.018  Sum_probs=41.9

Q ss_pred             HHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          240 AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      ++..++++.+.. .+...+.+.....+ ...+..|+..+ |.++   +..-+...+.++.+++..+++.+|+|..+
T Consensus       252 w~~Y~~q~vfla-s~alalLY~TVLsf-~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr  324 (432)
T PF06963_consen  252 WRTYFRQPVFLA-SFALALLYFTVLSF-GGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVR  324 (432)
T ss_pred             HHHHHhCHHHHH-HHHHHHHHHHHhcC-cHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence            344455554433 34444444333332 33444566554 5555   34446667778899999999999999874

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.17  E-value=0.00027  Score=62.13  Aligned_cols=129  Identities=15%  Similarity=0.134  Sum_probs=88.3

Q ss_pred             hHHHHHHHHh-hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHH
Q 018113           57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG  134 (360)
Q Consensus        57 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~  134 (360)
                      ..+++.+.+| .|.+..+.+...+....+.+++..+.-++..|+...|.+....+...+-+ ..+++++...+ .+-++.
T Consensus       256 gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~-~~l~~i  334 (422)
T COG0738         256 GSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL-YALFLI  334 (422)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHH
Confidence            5667777777 78888888888888888888888788888889999999888877666655 66777775443 445788


Q ss_pred             HhHhhhhhhhhhhHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 018113          135 GIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL  195 (360)
Q Consensus       135 G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~  195 (360)
                      |+..+..+|...+ .-.+. .+....       .+ +..+-..+|+.+.|.+.+++.|..+-
T Consensus       335 g~F~simfPTIfs-lal~~l~~~ts~-------~s-~~l~maivGGAiiP~l~G~i~d~~g~  387 (422)
T COG0738         335 GLFNSIMFPTIFS-LALKNLGEHTSV-------GS-GLLVMAIVGGAIIPPLQGVIADMFGI  387 (422)
T ss_pred             HHHhHHHHHHHHH-HHHhccCccccc-------cc-eeeeeheecchHHHHHHHHHHHhhhh
Confidence            9999999998855 43332 211111       11 11112236777778888888776543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.10  E-value=2.5e-05  Score=70.83  Aligned_cols=136  Identities=18%  Similarity=0.128  Sum_probs=96.0

Q ss_pred             HHHhhhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHH
Q 018113           50 MAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILM  128 (360)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~  128 (360)
                      .+..++...++..=.||++..+.-.|........+=.+.-++.+++.+|+|+-+++..++...++=. ..++.+|.|+.+
T Consensus       384 G~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vL  463 (618)
T KOG3762|consen  384 GAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVL  463 (618)
T ss_pred             HHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchhee
Confidence            3333444555656668888777666744444444444444578899999999999999998888865 678899999999


Q ss_pred             HHHHHHHhHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018113          129 IGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG  186 (360)
Q Consensus       129 ~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  186 (360)
                      -..+++|+..+..+.+..+ |++...+++...............+|-++|+++|+.+.
T Consensus       464 Pieilqgit~aliWaa~~s-Y~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v  520 (618)
T KOG3762|consen  464 PIEILQGITHALIWAAIIS-YASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV  520 (618)
T ss_pred             eHHHHHHHHHHHHHHHHHH-HHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh
Confidence            9999999999999999866 88877555554444444455455555555555554443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.01  E-value=0.0006  Score=52.66  Aligned_cols=75  Identities=20%  Similarity=0.223  Sum_probs=60.0

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc
Q 018113           78 FIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH  153 (360)
Q Consensus        78 ~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~  153 (360)
                      .++.+....+..++.+.+.+++|.|+.++++.+...+-...-+-++.+.++.+-.+.|++.+..+++... ++.+.
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~-ylt~~  117 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGT-YLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhH-HHHHc
Confidence            3444555556666778889999999999999998887555556778889999999999999999888744 87776

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.93  E-value=0.0012  Score=61.70  Aligned_cols=86  Identities=7%  Similarity=-0.138  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHHhhhhhhhh----hhhhh-hcchHHH--HHHHHHHHHHH-HHHh---------cchHHHHHHHHHHHHh
Q 018113           74 IGQLFIAGFGSSMLFGTIVG----SLADK-QGRKRAC--VTYCLTYILSC-ITKH---------SPQYKILMIGRILGGI  136 (360)
Q Consensus        74 ~g~~~~~~~~~~~~~~~~~G----~l~Dr-~Grr~~l--~~~~~~~~~~~-l~~~---------~~~~~~l~~~r~l~G~  136 (360)
                      .+++.+...+...+.+++..    ++.|| .+++...  .+|.++.+++. ..++         ..|+++++...++.|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            45666666666666666544    44554 3334433  67777777766 3332         4688999999999999


Q ss_pred             HhhhhhhhhhhHHhhhc---cccchhh
Q 018113          137 ATSLLFSAFESWLVAEH---NKRGFEQ  160 (360)
Q Consensus       137 ~~~~~~~~~~~~~i~~~---~~r~~~~  160 (360)
                      |+....|.... ++++.   +.||+..
T Consensus       394 ge~~~~p~~~~-~~~~~aP~~~~g~~~  419 (475)
T TIGR00924       394 GELMISPLGLS-WWTKIAPQRLMGQML  419 (475)
T ss_pred             HHHHHhHHHHH-HHHHhCCHHHHHHHH
Confidence            99999998866 76665   4455533

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.80  E-value=0.0017  Score=61.03  Aligned_cols=84  Identities=13%  Similarity=-0.003  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHhhhhhh----hhhhhhhhcchHHHHHHHHHHHHHH-HHHhcch---------HHHHHHHHHHHHhHhhh
Q 018113           75 GQLFIAGFGSSMLFGTI----VGSLADKQGRKRACVTYCLTYILSC-ITKHSPQ---------YKILMIGRILGGIATSL  140 (360)
Q Consensus        75 g~~~~~~~~~~~~~~~~----~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~---------~~~l~~~r~l~G~~~~~  140 (360)
                      ++..+...+...+.+++    ++++.||++.++.+.++.++.+++. ..+..++         .+++....++.|+|+..
T Consensus       319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~  398 (500)
T PRK09584        319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM  398 (500)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence            34444444434444444    4777788888788899999988887 4444433         45788899999999999


Q ss_pred             hhhhhhhHHhhhc---cccchh
Q 018113          141 LFSAFESWLVAEH---NKRGFE  159 (360)
Q Consensus       141 ~~~~~~~~~i~~~---~~r~~~  159 (360)
                      ..|...+ ++.+.   +.||+.
T Consensus       399 ~~p~g~s-~~~~~aP~~~rg~~  419 (500)
T PRK09584        399 ISGLGLA-MVAQLVPQRLMGFI  419 (500)
T ss_pred             HhHHHHH-HHHHhCcHHHHHHH
Confidence            9998866 66654   455553

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.74  E-value=0.0018  Score=59.77  Aligned_cols=153  Identities=16%  Similarity=0.096  Sum_probs=82.6

Q ss_pred             hHHHHHHHH-hhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcch--------H-HHHHHHHHHHHHH-HHHhcch-H
Q 018113           57 GPYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK--------R-ACVTYCLTYILSC-ITKHSPQ-Y  124 (360)
Q Consensus        57 ~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr--------~-~l~~~~~~~~~~~-l~~~~~~-~  124 (360)
                      ..++|...+ -+|.|..+.|.+.+..++...+...++|.++||.-+|        | .-.++....++.. ..++.++ .
T Consensus       278 ~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~  357 (466)
T KOG2532|consen  278 LTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEH  357 (466)
T ss_pred             HHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCc
Confidence            455666665 5899999999999999999999999999999988552        2 1222223333333 3344432 1


Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-cCCCCchhhhh
Q 018113          125 KILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS-FSLGPVAPFDA  203 (360)
Q Consensus       125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~-~~~~~~~~~~~  203 (360)
                      ....+.-+..+.+..+........-..+. .|..    .....+.....+. +...++|.+.+.+.+. .--+|+..|++
T Consensus       358 ~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~----a~~l~g~~~~~~~-~~~~~~P~~vg~~~~~~t~~eW~~VF~i  431 (466)
T KOG2532|consen  358 RLLAVILLTIAIGLSGFNISGFYKNHQDI-APQH----AGFVMGIINFVGA-LAGFIAPLLVGIIVTDNTREEWRIVFLI  431 (466)
T ss_pred             chHHHHHHHHHHHHcccchhhhHhhhhhc-cchH----HHHHHHHHHHHHH-HHHHHHHHheeeEeCCCCHHHHHHHHHH
Confidence            11211112222222222122111011111 1111    2223332333333 6677888888777731 11257788988


Q ss_pred             hHHHHHHHHHHH
Q 018113          204 AACFLAIGMVII  215 (360)
Q Consensus       204 ~~~~~~~~~~~~  215 (360)
                      .+++.++..+..
T Consensus       432 ~a~i~~~~~i~f  443 (466)
T KOG2532|consen  432 AAGILIVGNIIF  443 (466)
T ss_pred             HHHHHHHhchhe
Confidence            888777766554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.71  E-value=0.00085  Score=62.20  Aligned_cols=60  Identities=12%  Similarity=0.147  Sum_probs=48.0

Q ss_pred             hHHHHHHHHh-hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhh----hcchHHHHHHHHHHHH-HH
Q 018113           57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKRACVTYCLTYIL-SC  116 (360)
Q Consensus        57 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr----~Grr~~l~~~~~~~~~-~~  116 (360)
                      ..++|.+.++ .|.|..+.+.+.....+++.++.+..|.++||    ..+|........+... +.
T Consensus       293 ~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~  358 (495)
T KOG2533|consen  293 SYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGA  358 (495)
T ss_pred             HHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4558888887 56899999999899999999999999999999    6677777666666655 53

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.61  E-value=0.00034  Score=60.86  Aligned_cols=124  Identities=13%  Similarity=0.112  Sum_probs=70.2

Q ss_pred             HHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhc--chHH--HHHHHHHHHHhHhhhhhhhhhhHHhhhc---c
Q 018113           83 GSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS--PQYK--ILMIGRILGGIATSLLFSAFESWLVAEH---N  154 (360)
Q Consensus        83 ~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~--~~~~--~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~  154 (360)
                      +....+.++.+.+.||+|||+.+..+.+++++.. +....  +|..  ++..+|++...    .+.++ .+|..|.   +
T Consensus       392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg----~fqva-YvYtPEVyPTa  466 (528)
T KOG0253|consen  392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISG----AFQVA-YVYTPEVYPTA  466 (528)
T ss_pred             HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhc----hheEE-EEecCcccchh
Confidence            3355566679999999999999999999998865 33333  2322  33455655433    33333 3355564   4


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhc-cccC
Q 018113          155 KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWT-ENYG  224 (360)
Q Consensus       155 ~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  224 (360)
                      -|+...+.       +...+- +|+++.|+++-. .   +-+-..+..+...+++++.+.. ...| |+++
T Consensus       467 vRatgvGt-------cSsmaR-IggI~~p~iA~~-~---e~s~sl~i~vy~~~~ilagIav-cffPiEtkG  524 (528)
T KOG0253|consen  467 VRATGVGT-------CSSMAR-IGGIFSPVIAMR-A---ELSTSLPIFVYGALFILAGIAV-CFFPIETKG  524 (528)
T ss_pred             hhhcchhh-------hhhHHh-hhhhhhhHHHHH-h---ccceeehHHHHHHHHHHHHHHh-eeeeeccCC
Confidence            45543222       222222 677788877722 1   1233355556666666665555 3344 4444

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.60  E-value=0.0069  Score=56.70  Aligned_cols=103  Identities=8%  Similarity=-0.010  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHH-------HHHHHHHHHHHHH-H-----Hhc-----chHHHHHHHHHHHHhH
Q 018113           76 QLFIAGFGSSMLFGTIVGSLADKQGRKRA-------CVTYCLTYILSCI-T-----KHS-----PQYKILMIGRILGGIA  137 (360)
Q Consensus        76 ~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~-------l~~~~~~~~~~~l-~-----~~~-----~~~~~l~~~r~l~G~~  137 (360)
                      ...+...+...+.+++.|++.||.|+|+.       +.+|.++.+++.+ .     .++     .+.+++...-++.|+|
T Consensus       313 ~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~G  392 (489)
T PRK10207        313 SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLG  392 (489)
T ss_pred             HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence            33344445556788888999999999873       6666666655541 1     121     3567777888999999


Q ss_pred             hhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 018113          138 TSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG  183 (360)
Q Consensus       138 ~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~  183 (360)
                      ++...+.... ++.+.   +.++.    ..+.......+|+.+|..++.
T Consensus       393 e~~~~~~g~~-~~~~~aP~~~~g~----~~g~~~l~~~ig~~lg~~l~~  436 (489)
T PRK10207        393 ELFISALGLA-MIAALVPQHLMGF----ILGMWFLTQAAAFLLGGYVAT  436 (489)
T ss_pred             HHHHhHHHHH-HHHHhChHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            9999888766 55443   33344    333444444455555555543

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.57  E-value=0.042  Score=47.29  Aligned_cols=94  Identities=19%  Similarity=0.203  Sum_probs=62.6

Q ss_pred             hhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc-----ccc-----
Q 018113           87 LFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-----NKR-----  156 (360)
Q Consensus        87 ~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-----~~r-----  156 (360)
                      ..+.+.+.+..++|-|.++.++...+......-+-+.+..++-.....|++.+..+..-.. |+++.     +.|     
T Consensus        73 ~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~pr~~tlVPa~~~~G~aa~p~W~Skgt-YlT~~g~~ya~~~~~q~~  151 (390)
T KOG3097|consen   73 DSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLEPRYETLVPAGLVLGMAAGPIWASKGT-YLTPMGQNYANQRGEQAG  151 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcchhHHhhccHHHhhccccccccccCcc-eecHHHHHHHHhhhhhcc
Confidence            3334455888999999999988877766554445677888999999999999988776644 76553     334     


Q ss_pred             ----chhhHHHHHHHHHHHHHHHHHHHHH
Q 018113          157 ----GFEQQWLSITFSKAIFLGNGLVAIL  181 (360)
Q Consensus       157 ----~~~~~~~~~~~~~~~~~g~~~g~~~  181 (360)
                          .+..+.....+.-....|+.+...+
T Consensus       152 ~~~~~~ffg~Ffii~~~~qv~gn~issli  180 (390)
T KOG3097|consen  152 DGMKVRFFGEFFIIFQCAQVWGNLISSLI  180 (390)
T ss_pred             CceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence                2344444444554555555444443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.47  E-value=0.0068  Score=57.27  Aligned_cols=59  Identities=14%  Similarity=0.021  Sum_probs=41.2

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC  116 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~  116 (360)
                      ..|.+.+.++.|.+... ........+...++..+...+.||+|||+.++.+...+.++.
T Consensus       315 ~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~  373 (513)
T KOG0254|consen  315 FYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICL  373 (513)
T ss_pred             EeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHH
Confidence            35588888888877553 222222233344444556899999999999999999888865

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.35  E-value=0.021  Score=52.96  Aligned_cols=136  Identities=17%  Similarity=0.083  Sum_probs=79.3

Q ss_pred             HHHhhhhhhhhhhhhhhcc-hHHHHHHHHHHHHHH-HHHhcch---------------------HHHHHHHHHHHHhHhh
Q 018113           83 GSSMLFGTIVGSLADKQGR-KRACVTYCLTYILSC-ITKHSPQ---------------------YKILMIGRILGGIATS  139 (360)
Q Consensus        83 ~~~~~~~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~~-l~~~~~~---------------------~~~l~~~r~l~G~~~~  139 (360)
                      +...+.+.+.-++.+|+|+ |++...+.++.+++. ...+.++                     .+..++.-.+.|+..+
T Consensus       316 ~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A  395 (477)
T TIGR01301       316 VVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLA  395 (477)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHH
Confidence            3334555667788999995 777788888877776 3332221                     2566777888999998


Q ss_pred             hhhhhhhhHHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhh
Q 018113          140 LLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSS  218 (360)
Q Consensus       140 ~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (360)
                      ..+....+ ++++. +++++..+...+..+....+...+..+..+.+...    .+-+-...+.+.++..+++.+.....
T Consensus       396 ~~~siPfa-l~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~----~g~~~~~~~~~~gv~~~~aa~~~~~~  470 (477)
T TIGR01301       396 ITYSIPFA-LASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQL----FGGGNLPAFVVGAVAAFVSGLLALIL  470 (477)
T ss_pred             HHHHHhHH-HHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH----cCCCCeeHHHHHHHHHHHHHHHHHHh
Confidence            88887755 67765 32222233344444444444444444333332222    23334455666666666666666555


Q ss_pred             hcccc
Q 018113          219 WTENY  223 (360)
Q Consensus       219 ~~~~~  223 (360)
                      +|+.+
T Consensus       471 ~~~~~  475 (477)
T TIGR01301       471 LPRPR  475 (477)
T ss_pred             CCCCC
Confidence            55443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.86  E-value=0.24  Score=44.63  Aligned_cols=120  Identities=17%  Similarity=0.166  Sum_probs=67.3

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhccc
Q 018113           77 LFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNK  155 (360)
Q Consensus        77 ~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~  155 (360)
                      +..+-.+-+.+......+..+|...+.=...+.++..++. +.+++++.+.=+++-.+.+++.|.......+ +.+-.++
T Consensus        64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~-lt~~y~~  142 (402)
T PF02487_consen   64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLS-LTHFYGK  142 (402)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHH-HHHhcCc
Confidence            3333334444555556677888875544556666677777 6688899888888888888887776665544 4443333


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHH
Q 018113          156 RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL  208 (360)
Q Consensus       156 r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  208 (360)
                      +.      -..++    .|.+.++++|+..-..+.+ .++..|..+.....+.
T Consensus       143 ~~------l~~ws----sGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp  184 (402)
T PF02487_consen  143 SS------LSAWS----SGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLP  184 (402)
T ss_pred             cc------ccccc----CCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHH
Confidence            21      12222    2333444444433333333 4565555555544433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.84  E-value=0.013  Score=39.30  Aligned_cols=45  Identities=18%  Similarity=0.186  Sum_probs=36.0

Q ss_pred             HHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          267 VFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       267 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      ..-|.|.|.++ .+.++   |.+.++..+..+++.++.|.++||.++++
T Consensus        19 ~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~   66 (77)
T PF12832_consen   19 LYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK   66 (77)
T ss_pred             HHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence            46677778775 45554   56777778889999999999999999986

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=96.82  E-value=0.0071  Score=56.24  Aligned_cols=62  Identities=8%  Similarity=0.020  Sum_probs=43.3

Q ss_pred             HHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhc-CCChhhHHHHHHHHHHHH
Q 018113          263 MYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS-PPRVESYMQIVFVVSSVS  326 (360)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~  326 (360)
                      .++....+.|.|+.++.+.+.   +.....+.....++.+++|+++||+ |||+  .+..+.....+.
T Consensus        24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr--~iliG~il~~lg   89 (493)
T PRK15462         24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM--AVMLGALLMAIG   89 (493)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH--HHHHHHHHHHHH
Confidence            334367889999877767666   3555666777788999999999999 9984  444444444433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.65  E-value=0.17  Score=48.12  Aligned_cols=80  Identities=16%  Similarity=0.061  Sum_probs=50.2

Q ss_pred             hhCCChh---hhHHHHHHHHHHHhhhhhhhhhhhhhhcc-hHHHHHHHHHHHHHH-HHH-h-cchHHHHHHHHHHHHhHh
Q 018113           66 TYGFGKG---EIGQLFIAGFGSSMLFGTIVGSLADKQGR-KRACVTYCLTYILSC-ITK-H-SPQYKILMIGRILGGIAT  138 (360)
Q Consensus        66 ~~g~s~~---~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~~-l~~-~-~~~~~~l~~~r~l~G~~~  138 (360)
                      -|+-|..   +.++......++...++.+.|.+..+.+| |+.++.+.+++.+++ +++ . .+|....+..-++.|++.
T Consensus       340 vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~gi  419 (599)
T PF06609_consen  340 VFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGI  419 (599)
T ss_pred             hccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhH
Confidence            3554442   45566555556566677778888888887 555566766665543 332 2 345556667778888888


Q ss_pred             hhhhhhh
Q 018113          139 SLLFSAF  145 (360)
Q Consensus       139 ~~~~~~~  145 (360)
                      |......
T Consensus       420 G~~~~~~  426 (599)
T PF06609_consen  420 GGILVPA  426 (599)
T ss_pred             HHHHHHH
Confidence            8765443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.61  E-value=1.7e-05  Score=73.52  Aligned_cols=156  Identities=13%  Similarity=0.024  Sum_probs=78.1

Q ss_pred             HHHHHHHHhhCCChh-hhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHH----hcchH-----HH
Q 018113           58 PYVYYLYSTYGFGKG-EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK----HSPQY-----KI  126 (360)
Q Consensus        58 ~~~~~~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~----~~~~~-----~~  126 (360)
                      .+.+.+.++.+.++. ......   .+...++.+....+.||+|||+.++.+....+++. ..+    ..++.     ..
T Consensus       274 ~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (451)
T PF00083_consen  274 YYSPSIFENAGISNSFLATLIL---GLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSIL  350 (451)
T ss_pred             cccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            346677777777776 122221   22233444456789999999999999988877755 332    11111     11


Q ss_pred             HHHHHHHHHhHhh-hhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhh
Q 018113          127 LMIGRILGGIATS-LLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFD  202 (360)
Q Consensus       127 l~~~r~l~G~~~~-~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~  202 (360)
                      .++.-.+.....+ +..+.. ..+.+|.   +.|...       .+....++. ++..+.+.+...+.+..+  -...+.
T Consensus       351 ~i~~~~l~~~~~~~g~~~~~-~~~~~ElfPt~~R~~~-------~~~~~~~~~-i~~~i~~~~~~~~~~~~~--~~~~~~  419 (451)
T PF00083_consen  351 SIVFLALFFAFFSLGWGPLP-WIYTAELFPTKVRSTG-------IGLSYAVGR-IGGFIIPFLFPYLFNNLG--GWGVFL  419 (451)
T ss_pred             cceeeeeccccccccccccc-cccccccccccccccc-------ccccccccc-cccccccccccccccccc--ccccch
Confidence            1111111211222 111222 2356776   445542       222233333 444455555444443332  123344


Q ss_pred             hhHHHHHHHHHHHhhhhccccCCCC
Q 018113          203 AAACFLAIGMVIILSSWTENYGDPS  227 (360)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~  227 (360)
                      +.+.+..+.........||+++++-
T Consensus       420 i~~~~~~i~~i~~~~~lpET~g~~l  444 (451)
T PF00083_consen  420 IFAGVCLIAIIFVYFFLPETKGKTL  444 (451)
T ss_pred             hhHHHHHHHHhheeEEEeeCCCCCH
Confidence            4455555555555577888877543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.46  E-value=0.0043  Score=56.86  Aligned_cols=59  Identities=19%  Similarity=0.205  Sum_probs=51.8

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS  115 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~  115 (360)
                      .|+++.+.+++|+++++.|.+...--+..++..|++|.++||+-+||.++++..+..+.
T Consensus        31 ~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~   89 (618)
T KOG3762|consen   31 FPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVT   89 (618)
T ss_pred             chHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            58888899999999999999999988889999999999999999888777776666553

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=96.40  E-value=0.11  Score=45.18  Aligned_cols=240  Identities=15%  Similarity=0.099  Sum_probs=117.2

Q ss_pred             HH-HHHHH-HhhCCChhhhH-HH---HHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHH
Q 018113           58 PY-VYYLY-STYGFGKGEIG-QL---FIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIG  130 (360)
Q Consensus        58 ~~-~~~~~-~~~g~s~~~~g-~~---~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~  130 (360)
                      |+ .|++. .+.+++..|+. -+   -+-.++...+   +.=.+.|-.-.|++++.-.+...... +.-+.++.+.+-+.
T Consensus        25 P~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~Lv---pvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvl  101 (433)
T KOG3810|consen   25 PYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLV---PVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVL  101 (433)
T ss_pred             CccchhccCCCCCccHHHHhcccccchhHHHHHHHH---HHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeee
Confidence            55 44444 35567766654 11   1112222222   24457898888998887766655555 66788999999888


Q ss_pred             HHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHH
Q 018113          131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF  207 (360)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  207 (360)
                      .+..|...+... +-.+ ++-+.   +++.+..+...+..-.    |...|..++..+.+    ...+.....-.+....
T Consensus       102 E~FyG~~tAaEI-AYys-YIYs~Vd~~~Yqrvt~y~RaA~L~----g~~~g~vlaQlLvs----~~~~sy~~LN~ISL~~  171 (433)
T KOG3810|consen  102 EFFYGPATAAEI-AYYS-YIYSKVDPEMYKRVTGYCRAAFLV----GKFVGSVLAQLLVS----LETLSYTTLNYISLAE  171 (433)
T ss_pred             hhhcChHHHHHH-hhhh-eeeeecCHHHHHHHHHHhHHHHHH----HhHHHhHHHHHHhh----hcccchhhhchhhHHH
Confidence            999888766542 2212 43332   4444444444444332    33333344433332    2223332222222222


Q ss_pred             HHHHHHHHhhhhccccC-------CCC-------c--chhH-H-------HHHHHHHHHHhcchhHHHHHHHHHHHHhhH
Q 018113          208 LAIGMVIILSSWTENYG-------DPS-------E--SKDL-L-------TQFRGAAVAIASDEKIALLGAIQSLFEGSM  263 (360)
Q Consensus       208 ~~~~~~~~~~~~~~~~~-------~~~-------~--~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (360)
                      ..+...+. ..+|..++       +++       +  .++. .       ....+...+..+||++..-.+-..+...+.
T Consensus       172 ~~ia~~~A-~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~  250 (433)
T KOG3810|consen  172 VTIAVLLA-LFLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGY  250 (433)
T ss_pred             HHHHHHHH-hhCCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchh
Confidence            22222222 22221110       000       0  0000 1       111223445567787776666555555555


Q ss_pred             HHHHHhhhccccCCCCCcch----hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          264 YTFVFLWTPALSPNDEEIPH----GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      +. ..+|....-++....+.    |..=++..+.+.++.+..|.+--+..|..
T Consensus       251 ~Q-V~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g  302 (433)
T KOG3810|consen  251 YQ-VTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWG  302 (433)
T ss_pred             HH-HHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhh
Confidence            44 34444433222211111    44445666778888888898876666654

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.36  E-value=0.051  Score=48.99  Aligned_cols=89  Identities=17%  Similarity=0.049  Sum_probs=57.9

Q ss_pred             HHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcc-hHHHHHHHHHHHHHH--HHHh---cchHHHHHHHHHHHHh
Q 018113           63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR-KRACVTYCLTYILSC--ITKH---SPQYKILMIGRILGGI  136 (360)
Q Consensus        63 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~~--l~~~---~~~~~~l~~~r~l~G~  136 (360)
                      ..+.-|.+....|.......+++++++...|.+.||... |.+.........++.  +..+   ..+.+.+...-.+.|.
T Consensus       292 ~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~  371 (480)
T KOG2563|consen  292 ALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGF  371 (480)
T ss_pred             ccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHH
Confidence            344556777788888888889999999999999999865 555555555554442  1111   2233455555667777


Q ss_pred             HhhhhhhhhhhHHhhh
Q 018113          137 ATSLLFSAFESWLVAE  152 (360)
Q Consensus       137 ~~~~~~~~~~~~~i~~  152 (360)
                      ......|...- +-.|
T Consensus       372 ~~~~~~Pig~E-lgvE  386 (480)
T KOG2563|consen  372 FGTGYLPIGFE-LGVE  386 (480)
T ss_pred             hhcCCCCccee-eeee
Confidence            76666675533 4344

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.32  E-value=0.94  Score=42.31  Aligned_cols=79  Identities=11%  Similarity=0.175  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhcccc---CCCCCcch--hHHHHHHHHHHHHHHHHHHHHHhhc
Q 018113          234 TQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS---PNDEEIPH--GFIFATFMLASMLGSSLASRLMARS  308 (360)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~  308 (360)
                      ....+..+.++|+|.+..++....+...+....-..|-....   .+....+.  |......++..++..++++.+.+|+
T Consensus       267 ~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~  346 (491)
T PF03219_consen  267 MSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRF  346 (491)
T ss_pred             ccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344566778888888888776665555444332233332211   12111111  3344445566666668889999999


Q ss_pred             CCCh
Q 018113          309 PPRV  312 (360)
Q Consensus       309 g~~~  312 (360)
                      |-+.
T Consensus       347 GW~~  350 (491)
T PF03219_consen  347 GWRT  350 (491)
T ss_pred             hHHH
Confidence            8874

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=96.29  E-value=0.34  Score=42.95  Aligned_cols=46  Identities=15%  Similarity=0.234  Sum_probs=31.8

Q ss_pred             HHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhh-----hhcchHHHH
Q 018113           59 YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD-----KQGRKRACV  106 (360)
Q Consensus        59 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~D-----r~Grr~~l~  106 (360)
                      .+|.+.+.-|.|.++.+....++.  -...-+.+.++.|     |+||||.-+
T Consensus        52 ~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWv  102 (510)
T KOG3574|consen   52 AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWV  102 (510)
T ss_pred             hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhcccccee
Confidence            588888888888888875533322  1223345888999     999998643

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.07  E-value=0.43  Score=44.24  Aligned_cols=104  Identities=15%  Similarity=0.164  Sum_probs=76.4

Q ss_pred             HHHhhCCChhhhHHHHHHHHHHHhhhhhhhh-hhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhh
Q 018113           63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVG-SLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSL  140 (360)
Q Consensus        63 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G-~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~  140 (360)
                      +...+++++.+.+...+.....+.+...+.. .+...+|-|+++..|...-.+.. ..+++++.|+......+.++.. .
T Consensus       268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~-~  346 (463)
T KOG2816|consen  268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAG-I  346 (463)
T ss_pred             EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc-c
Confidence            3457899999999777777776777777544 78888999998888888888877 7799999999998888887753 3


Q ss_pred             hhhhhhhHHhhh---ccccchhhHHHHHHHH
Q 018113          141 LFSAFESWLVAE---HNKRGFEQQWLSITFS  168 (360)
Q Consensus       141 ~~~~~~~~~i~~---~~~r~~~~~~~~~~~~  168 (360)
                      ..+...+ .++.   .+++|+..++......
T Consensus       347 ~~pa~~s-~~s~~v~~~e~g~v~~~is~i~~  376 (463)
T KOG2816|consen  347 VFPAIRA-FASILVSPEEQGKVFGIISGIEG  376 (463)
T ss_pred             hhHHHHh-HHHhhcccccccchhhHHHHHHH
Confidence            3455544 5443   3788885554444433

>PTZ00207 hypothetical protein; Provisional

Probab=95.85  E-value=0.13  Score=49.12  Aligned_cols=148  Identities=11%  Similarity=0.079  Sum_probs=76.0

Q ss_pred             HHHHHHhh-CCChhh-hHH-HHHHHHHHHhhhhhhhhhhh---hhhc-----chHH-HHHHHHHHHHHH-HHHhcchHHH
Q 018113           60 VYYLYSTY-GFGKGE-IGQ-LFIAGFGSSMLFGTIVGSLA---DKQG-----RKRA-CVTYCLTYILSC-ITKHSPQYKI  126 (360)
Q Consensus        60 ~~~~~~~~-g~s~~~-~g~-~~~~~~~~~~~~~~~~G~l~---Dr~G-----rr~~-l~~~~~~~~~~~-l~~~~~~~~~  126 (360)
                      +.++.+.+ |.+.++ ... ..+...+...++-+..|.+.   .|..     +|+. +.+..+ +.++. +.++.-....
T Consensus       376 ~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~  454 (591)
T PTZ00207        376 ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAA  454 (591)
T ss_pred             HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccH
Confidence            66788888 663322 121 33444444444444455444   2222     1222 233333 44444 4444332268


Q ss_pred             HHHHHHHHHhHhhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhcccC----C------
Q 018113          127 LMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILS-GLFGNLLVDSFS----L------  195 (360)
Q Consensus       127 l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~-~~l~~~l~~~~~----~------  195 (360)
                      +.+.-++.|++.|..++.... .++|.-.+ .    ....++... +++.+|..+- ..+.+.+.|...    -      
T Consensus       455 L~~~~~lvg~~~G~~~~~~~~-i~selFgk-~----~g~~yN~~~-~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~  527 (591)
T PTZ00207        455 LPLPYFIAAFANGFMAATIAL-VTRTIFAK-D----PAKHYNFCF-LGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTER  527 (591)
T ss_pred             hHHHHHHHHHHhhHhHHHHHH-HHHHHhcc-c----hHHHhhHHh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCc
Confidence            999999999999999888855 78887222 2    122333222 2344555543 445554443221    1      


Q ss_pred             -CCchhhhhhHHHHHHHHHHH
Q 018113          196 -GPVAPFDAAACFLAIGMVII  215 (360)
Q Consensus       196 -~~~~~~~~~~~~~~~~~~~~  215 (360)
                       =.+.+|.+.+.++..+.+..
T Consensus       528 ~C~~~~~~v~~~~~~~g~~~s  548 (591)
T PTZ00207        528 VCVVMPLAFLLGLSFLAFITS  548 (591)
T ss_pred             eeeHhHHHHHHHHHHHHHHHH
Confidence             13567777766666555553

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.77  E-value=0.38  Score=42.73  Aligned_cols=115  Identities=13%  Similarity=0.158  Sum_probs=77.9

Q ss_pred             HhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhc--chHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhh
Q 018113           65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG--RKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLL  141 (360)
Q Consensus        65 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~G--rr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~  141 (360)
                      +.+|.++.|.|.+++...+.+.+.+....+..||..  -|-.+..+.....-.. +.+.++....+..+-.+-.+..+..
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~  369 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASV  369 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHh
Confidence            679999999998888877778888777888888876  5555655555544444 5677778788888888888877777


Q ss_pred             hhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018113          142 FSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL  188 (360)
Q Consensus       142 ~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  188 (360)
                      .+.... ++...   ++||...+..++...        ++-.++|.+++.
T Consensus       370 vt~Lt~-Lv~~~~~~~qrG~~~Gi~~Sl~a--------laRaiGPlv~g~  410 (451)
T KOG2615|consen  370 VTCLTS-LVHKYGPQSQRGTLNGIFRSLGA--------LARAIGPLVSGV  410 (451)
T ss_pred             hHHHHH-HHHhcCCcccchHHHHHHHHHHH--------HHHHhhhhhhhe
Confidence            666544 65554   667764444433332        444555555543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=95.69  E-value=0.1  Score=47.25  Aligned_cols=43  Identities=7%  Similarity=0.116  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 018113          284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLL  328 (360)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  328 (360)
                      +.+.....++.++|++..|++.||+|||+  ......++..++.+
T Consensus        87 ~~Vn~~A~vGti~GQl~FG~lgD~~GRK~--vYG~~liImIi~t~  129 (538)
T KOG0252|consen   87 ALVNAAALVGTIFGQLFFGWLGDKFGRKK--VYGKELIIMIICSA  129 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchh--hhhHHHHHHHHHHH
Confidence            45667778999999999999999999994  44444444444444

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=95.38  E-value=2.6  Score=39.98  Aligned_cols=62  Identities=18%  Similarity=0.095  Sum_probs=37.9

Q ss_pred             hhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHH---HHHHHHHHHHhHhhhhhhhhhhHHhhhc
Q 018113           91 IVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYK---ILMIGRILGGIATSLLFSAFESWLVAEH  153 (360)
Q Consensus        91 ~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~---~l~~~r~l~G~~~~~~~~~~~~~~i~~~  153 (360)
                      ..+...||+|||.....+.....+++ ..++..+..   ...+...+...+.+..+... ..+.+|.
T Consensus       369 ~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el  434 (521)
T KOG0255|consen  369 RNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLI-FLYSAEL  434 (521)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence            45789999999999999999998877 555543322   23333344444444444443 2245554

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.18  E-value=0.16  Score=45.76  Aligned_cols=106  Identities=14%  Similarity=0.235  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHH-HH---HhcchH------HHHHHHHHHHHhHhhhhhhhhhhHHhhhc-cc--cchhhHHHHHHHHH
Q 018113          103 RACVTYCLTYILSC-IT---KHSPQY------KILMIGRILGGIATSLLFSAFESWLVAEH-NK--RGFEQQWLSITFSK  169 (360)
Q Consensus       103 ~~l~~~~~~~~~~~-l~---~~~~~~------~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~--r~~~~~~~~~~~~~  169 (360)
                      |++.++.++..+|. +.   +.-++.      +.+.++-.+.++|.|+.-|...+ +.+|. ++  +.+.    ...++.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~-~~~dq~~~~~~~~~----~~~F~~   76 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISP-FGADQYDEDDDSRR----DSFFNW   76 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHH-HHHHCSSTTTTTHH----HHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHH-HHHHHhcccchhhh----hhhHHH
Confidence            46777778888876 42   222222      57888889999999999888856 87775 22  2232    223332


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHh
Q 018113          170 AIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL  216 (360)
Q Consensus       170 ~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (360)
                      .+. +..+|..++.....++-+.  ++|...|.+..+..+++.....
T Consensus        77 fY~-~in~G~~~~~~~~~~i~~~--~~~~~~f~i~~~~~~~~~~~f~  120 (372)
T PF00854_consen   77 FYW-GINIGSLFSPTLVPYIQQN--YGWFLGFGIPAIGMLLALIVFL  120 (372)
T ss_dssp             HHH-HHHHHHHHHHHCCCHHHHC--S-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHhhhhHhhcccchhhccc--cchhhhhhHHHHHHHHHHHHHH
Confidence            222 3336667776666666555  4555678777766666655553

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=94.50  E-value=2.7  Score=40.20  Aligned_cols=153  Identities=16%  Similarity=0.117  Sum_probs=87.6

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhh-cchHHHHHHHHHHHHHH-HH---Hhcc---------
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-IT---KHSP---------  122 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~-l~---~~~~---------  122 (360)
                      .+.+.++.++++.+...+.-................+.++|-| ||=+++.++.++...+. +.   +..+         
T Consensus        58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~  137 (571)
T KOG1237|consen   58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF  137 (571)
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence            4668888899998887666666666665666667899999976 89888888887776653 21   1111         


Q ss_pred             ----------h---HHHHHHHHHHHHhHhhhhhhhhhhHHhhhc-c---ccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018113          123 ----------Q---YKILMIGRILGGIATSLLFSAFESWLVAEH-N---KRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (360)
Q Consensus       123 ----------~---~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~---~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  185 (360)
                                +   ...+..+.-+..+|.|+.-+...+ +-+|. +   ++..  ......++. .......|..++..+
T Consensus       138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~-fGadQfd~~~~~~~--~~~~~fFnW-~yf~~~~g~l~a~t~  213 (571)
T KOG1237|consen  138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLA-FGADQFDELDPVEV--KGIPSFFNW-FYFSQNGGALLAQTV  213 (571)
T ss_pred             CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchh-hcccccCccCcchh--hCcccchhH-HHHHHHHHHHHHHHH
Confidence                      0   125555666677788887777644 54443 2   1111  001112221 112333555555555


Q ss_pred             hhhhhcccCCCCchhhhhhHHHHHHHHHHH
Q 018113          186 GNLLVDSFSLGPVAPFDAAACFLAIGMVII  215 (360)
Q Consensus       186 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (360)
                      ..+.-+..+|.  .-|.+..+...++.++.
T Consensus       214 ~vyiq~~~~w~--lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  214 LVYIQDNVGWK--LGFGIPTVLNALAILIF  241 (571)
T ss_pred             HHhhhhcccce--eeccHHHHHHHHHHHHH
Confidence            44443444554  45666655555444444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=94.12  E-value=0.8  Score=44.54  Aligned_cols=59  Identities=20%  Similarity=0.049  Sum_probs=42.5

Q ss_pred             HHHHHHHH-hhCCChhhhHHHHHHHHH-HHhhhhhhhhhhhhhhc--chHHHHHHHHHHHHHH
Q 018113           58 PYVYYLYS-TYGFGKGEIGQLFIAGFG-SSMLFGTIVGSLADKQG--RKRACVTYCLTYILSC  116 (360)
Q Consensus        58 ~~~~~~~~-~~g~s~~~~g~~~~~~~~-~~~~~~~~~G~l~Dr~G--rr~~l~~~~~~~~~~~  116 (360)
                      .++|...+ ++|.++.+.+.+.....+ +..++.++.|+++||++  .|+.+..+.+...++.
T Consensus       351 ~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~  413 (633)
T TIGR00805       351 TFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY  413 (633)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence            44565554 699999999988877665 45677778999999998  4566666655555543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=93.99  E-value=1.2  Score=39.35  Aligned_cols=29  Identities=14%  Similarity=0.185  Sum_probs=23.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          284 GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      +..+......+.+...+.|.++||+|||+
T Consensus        72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~  100 (354)
T PF05631_consen   72 AILFVAGFASSAIFGTFVGSLADRYGRKK  100 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence            45555556667788888999999999996

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=92.47  E-value=9  Score=35.56  Aligned_cols=106  Identities=17%  Similarity=0.055  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcch-------HHHHHHHHHHHHHH-HHH-----hc-----chHHHHHHHHHHHHhH
Q 018113           76 QLFIAGFGSSMLFGTIVGSLADKQGRK-------RACVTYCLTYILSC-ITK-----HS-----PQYKILMIGRILGGIA  137 (360)
Q Consensus        76 ~~~~~~~~~~~~~~~~~G~l~Dr~Grr-------~~l~~~~~~~~~~~-l~~-----~~-----~~~~~l~~~r~l~G~~  137 (360)
                      +..+...+.-.+.+|+..++-.|.++|       .-+-++..+.+.+. +..     ..     -|.++++..-+++++|
T Consensus       328 ~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~g  407 (498)
T COG3104         328 WFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFG  407 (498)
T ss_pred             HHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence            334444444456666666655554333       12444555555544 211     11     3577888899999999


Q ss_pred             hhhhhhhhhhHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018113          138 TSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN  187 (360)
Q Consensus       138 ~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  187 (360)
                      +=+..|...+ +++...++ .    ..+.......++.+.+..+++.+++
T Consensus       408 EL~iSpvGLs-~~t~laP~-~----~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         408 ELFISPVGLS-MVTKLAPP-A----LKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHhCHHHHH-HHHHhChH-H----HHHHHHHHHHHHHHHHHHhhceecc
Confidence            9999998877 66654322 2    2223333444455555555555444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=92.23  E-value=7.7  Score=35.72  Aligned_cols=115  Identities=21%  Similarity=0.115  Sum_probs=70.7

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-H---HHhcch-------HH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I---TKHSPQ-------YK  125 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l---~~~~~~-------~~  125 (360)
                      +....++..+ |+++..+|..=+.+.+.+..+.....++.+|+|..|.=.++...-.... +   ..+.+.       ..
T Consensus       279 ~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~  357 (432)
T PF06963_consen  279 GLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAY  357 (432)
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence            3334444444 9999999999999988888888899999999999888777765444332 1   122222       22


Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHH
Q 018113          126 ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFL  173 (360)
Q Consensus       126 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~  173 (360)
                      .++.+-.+.-+|.=...-+... ++.|.   ++||...+...+..+..-.+
T Consensus       358 ~l~~gi~~SR~GLW~fDL~~~q-i~Qe~V~~~~Rg~v~gvq~sl~~lf~ll  407 (432)
T PF06963_consen  358 LLLGGIALSRIGLWSFDLAVTQ-IMQENVPESERGAVSGVQNSLQSLFELL  407 (432)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHH-hhcccCCHHHhhHHHHHHHHHHHHHHHH
Confidence            3333333333333333333323 55554   77888777777666644443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=91.78  E-value=12  Score=35.52  Aligned_cols=39  Identities=5%  Similarity=-0.206  Sum_probs=28.2

Q ss_pred             HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhh
Q 018113           60 VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK   98 (360)
Q Consensus        60 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr   98 (360)
                      .-.+..-+|-+..+.+.+.+....+..+++...|++.++
T Consensus        38 ~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~   76 (521)
T PRK03612         38 GTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD   76 (521)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            334445678888888888888888888887777776643

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=91.12  E-value=13  Score=34.56  Aligned_cols=80  Identities=14%  Similarity=0.066  Sum_probs=47.9

Q ss_pred             cchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhCCC---hhhhHHHHHHHHH-HHhhhhhhhhhhhhhhcchHHHHHHHHH
Q 018113           36 NSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFG---KGEIGQLFIAGFG-SSMLFGTIVGSLADKQGRKRACVTYCLT  111 (360)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s---~~~~g~~~~~~~~-~~~~~~~~~G~l~Dr~Grr~~l~~~~~~  111 (360)
                      +|+.+.-+....+..++-.+...++-.+.+.+.++   +..+..+-+...+ ++.+..++.+++.++..|++++-..+..
T Consensus        22 ~r~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~  101 (509)
T COG3202          22 RRYELKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGF  101 (509)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            34444444444444455555545555666666554   3444555555544 4556666789999999999988776655


Q ss_pred             HHHH
Q 018113          112 YILS  115 (360)
Q Consensus       112 ~~~~  115 (360)
                      +...
T Consensus       102 F~~f  105 (509)
T COG3202         102 FLGF  105 (509)
T ss_pred             HHHH
Confidence            5443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=90.58  E-value=1.5  Score=40.43  Aligned_cols=48  Identities=23%  Similarity=0.182  Sum_probs=35.9

Q ss_pred             CChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 018113           69 FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC  116 (360)
Q Consensus        69 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~  116 (360)
                      .|+...|.+...+.++..++........-+..-|+++..+.++.++..
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~  299 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLAS  299 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence            888888888777777667766667776667778888888877776643

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=89.15  E-value=17  Score=32.97  Aligned_cols=18  Identities=33%  Similarity=0.401  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 018113          290 FMLASMLGSSLASRLMAR  307 (360)
Q Consensus       290 ~~~~~~~~~~~~g~l~dr  307 (360)
                      +++...+|.....+.-++
T Consensus       292 fN~~d~vG~~~a~~~~~~  309 (406)
T KOG1479|consen  292 FNVFDLIGSILAALLTWP  309 (406)
T ss_pred             hHHHHHhhhhhhhcccCC
Confidence            678888887777666555

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=88.36  E-value=1.9  Score=36.25  Aligned_cols=21  Identities=10%  Similarity=-0.037  Sum_probs=15.3

Q ss_pred             HHHHHHhcchhHHHHHHHHHH
Q 018113          238 GAAVAIASDEKIALLGAIQSL  258 (360)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~  258 (360)
                      +...+.+|++..|........
T Consensus        85 ~s~~~~LK~K~tw~w~~~Yg~  105 (267)
T PF07672_consen   85 PSYKSILKEKETWKWILIYGI  105 (267)
T ss_pred             chHHHHHccchHHHHHHHHHH
Confidence            466788999988877665554

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=88.25  E-value=2.5  Score=28.81  Aligned_cols=61  Identities=21%  Similarity=0.344  Sum_probs=39.3

Q ss_pred             hhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhHh
Q 018113          269 LWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIV  332 (360)
Q Consensus       269 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  332 (360)
                      ...|...++ .+.+.   +.+.+.+.++..+|++...++.++.+++  +.+..+.....+......+
T Consensus        13 plLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~--~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen   13 PLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR--RLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             hHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHH
Confidence            345555544 34433   6888999999999999999998885444  4455555555554444433

Note that many members are hypothetical proteins.

>TIGR00806 rfc RFC reduced folate carrier

Probab=87.60  E-value=3.5  Score=38.30  Aligned_cols=57  Identities=7%  Similarity=-0.091  Sum_probs=39.1

Q ss_pred             ccCCCCCcch----hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhHh
Q 018113          274 LSPNDEEIPH----GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIV  332 (360)
Q Consensus       274 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  332 (360)
                      ++.++.+.+.    +.+......+..+..+++|+++||+|.|+  .+....+...+...+..+
T Consensus        51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~--vL~l~~l~Wsl~t~L~~f  111 (511)
T TIGR00806        51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP--VLVLQALSFVCVWLLLLL  111 (511)
T ss_pred             HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH--HHHHHHHHHHHHHHHHHH
Confidence            3333555544    56778888999999999999999999994  455555444444444443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=86.38  E-value=2.8  Score=38.92  Aligned_cols=33  Identities=9%  Similarity=0.132  Sum_probs=17.0

Q ss_pred             HHHHHHhhhhhhhhcccCCCCchhhhhhHHHHH
Q 018113          177 LVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA  209 (360)
Q Consensus       177 ~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  209 (360)
                      .+..++|.+........|.+|.+.+.....+..
T Consensus       435 ~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~  467 (488)
T KOG2325|consen  435 IARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV  467 (488)
T ss_pred             hhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence            555566666555555556665544444333333

>PRK11469 hypothetical protein; Provisional

Probab=86.02  E-value=14  Score=29.58  Aligned_cols=25  Identities=8%  Similarity=-0.035  Sum_probs=18.4

Q ss_pred             hhhhhhhhcchHHHHHHHHHHHHHH
Q 018113           92 VGSLADKQGRKRACVTYCLTYILSC  116 (360)
Q Consensus        92 ~G~l~Dr~Grr~~l~~~~~~~~~~~  116 (360)
                      +.++.+++|+|.-++-+.++..++.
T Consensus       155 G~~~g~~~g~~a~~lgG~iLI~iGi  179 (188)
T PRK11469        155 GRFIGSIIGKKAEILGGLVLIGIGV  179 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4446677888888877777777776

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=83.70  E-value=7.4  Score=35.78  Aligned_cols=40  Identities=23%  Similarity=0.233  Sum_probs=26.0

Q ss_pred             HHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhh
Q 018113           60 VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ   99 (360)
Q Consensus        60 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~   99 (360)
                      .+...+-.|.+..+.-....+...++.++..++|.++||+
T Consensus       271 ~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~  310 (493)
T KOG1330|consen  271 IYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL  310 (493)
T ss_pred             HHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHH
Confidence            5555555565544444455555666677777899999984

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.13  E-value=3  Score=29.45  Aligned_cols=31  Identities=29%  Similarity=0.308  Sum_probs=21.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhh-cchHHHHH
Q 018113           77 LFIAGFGSSMLFGTIVGSLADKQ-GRKRACVT  107 (360)
Q Consensus        77 ~~~~~~~~~~~~~~~~G~l~Dr~-Grr~~l~~  107 (360)
                      -.+.-++++.+.+...|++.||| |.++.-++
T Consensus        47 klssefIsGilVGa~iG~llD~~agTsPwglI   78 (116)
T COG5336          47 KLSSEFISGILVGAGIGWLLDKFAGTSPWGLI   78 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence            34555677778888899999997 44444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.94
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.92
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.88
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.79
2xut_A	524	Proton/peptide symporter family protein; transport	99.72
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.31
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.26
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.02
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.99
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.94
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.55
2xut_A	524	Proton/peptide symporter family protein; transport	98.22

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.96  E-value=8.2e-28  Score=219.81  Aligned_cols=262  Identities=13%  Similarity=0.146  Sum_probs=185.8

Q ss_pred             hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HH---HhcchHHHHHHHHH
Q 018113           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKILMIGRI  132 (360)
Q Consensus        57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~---~~~~~~~~l~~~r~  132 (360)
                      .+..|.+.+++|.|+.+.|++.+...++..+++++.|+++||+|||++++.+.++.+++. ++   .++++++.++++|+
T Consensus        46 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (438)
T 3o7q_A           46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF  125 (438)
T ss_dssp             HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            577999999999999999999999999999999999999999999999999999999977 66   78899999999999


Q ss_pred             HHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-------------
Q 018113          133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG-------------  196 (360)
Q Consensus       133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~-------------  196 (360)
                      +.|++.+...+.... +++|.   ++|++..+.....        ..+|..+++.+++.+.+.....             
T Consensus       126 l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~--------~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  196 (438)
T 3o7q_A          126 IIAAGLGCLETAANP-FVTVLGPESSGHFRLNLAQTF--------NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ  196 (438)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHSSCSTTHHHHHHHHHHH--------HHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHH
T ss_pred             HHHhhHHHhhhhHHH-HHHHHcCchhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhcccccccccccccCCcch
Confidence            999999999888855 88887   4555533333332        2355555555555555112222             


Q ss_pred             -----------CchhhhhhHHHHHHHHHHHh-hhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHH
Q 018113          197 -----------PVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMY  264 (360)
Q Consensus       197 -----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (360)
                                 |+..|...+.+..+...... .+.||+++++++++ ..++.++..++++|+|+++.......+......
T Consensus       197 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (438)
T 3o7q_A          197 LSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA-KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT  275 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS-STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc-cccchhhhHHHHHhChHHHHHHHHHHHHHHHHH
Confidence                       67777665554444333332 33444433221111 122233456678999999887776666555444


Q ss_pred             HHHHhhhccc-cCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhH
Q 018113          265 TFVFLWTPAL-SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPI  331 (360)
Q Consensus       265 ~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  331 (360)
                      . ...+.|.| .++..+.+.   +.......++.++++++.+++.||++||+  .+.....+..+......
T Consensus       276 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--~~~~~~~~~~~~~~~~~  343 (438)
T 3o7q_A          276 A-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--VLAAYALIAMALCLISA  343 (438)
T ss_dssp             H-HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHH
Confidence            4 57888988 777666655   46667778889999999999999999884  44455544444444333

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.94  E-value=1.8e-25  Score=204.96  Aligned_cols=265  Identities=12%  Similarity=0.087  Sum_probs=184.9

Q ss_pred             cchhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHH
Q 018113           36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT  111 (360)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~  111 (360)
                      ++.++..+....+..+..+++    .+.+|.+.+++ .++.+.|++.+...++..+++++.|+++||+|||+++..+.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~  101 (451)
T 1pw4_A           23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence            344455555555555555554    56789999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHH-HHHh----cchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 018113          112 YILSC-ITKH----SPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG  183 (360)
Q Consensus       112 ~~~~~-l~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~  183 (360)
                      .+++. ++++    +++++.++++|++.|++.+...+.... ++.|.   ++|++..+....    ...    +|..+++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~----~~~----~g~~~g~  172 (451)
T 1pw4_A          102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVSVWNC----AHN----VGGGIPP  172 (451)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH-HHHTTCTTTHHHHHHHHHHH----HHH----HHHTSHH
T ss_pred             HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHH-HHHHHCCchhhhHHHHHHHH----HHH----HHHHHHH
Confidence            99987 7788    899999999999999999999888866 88886   455554333332    223    4445555


Q ss_pred             hhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCC-----Cc-chh-------HHH-H--HHH-HHHHHhcc
Q 018113          184 LFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP-----SE-SKD-------LLT-Q--FRG-AAVAIASD  246 (360)
Q Consensus       184 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~-------~~~-~--~~~-~~~~~~~~  246 (360)
                      .+++.+.+..+ +|+..|++.+.+.++..+......||++++.     ++ .++       ..+ +  .++ ..++.+++
T Consensus       173 ~~~~~l~~~~g-~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (451)
T 1pw4_A          173 LLFLLGMAWFN-DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPN  251 (451)
T ss_dssp             HHHHHHHHHTC-CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSC
T ss_pred             HHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcC
Confidence            55555444444 1556676666555544444333344432211     00 000       000 0  001 13567888


Q ss_pred             hhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhc--CCCh
Q 018113          247 EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS--PPRV  312 (360)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~  312 (360)
                      |+++...+...+.....+. ...+.|.|.++..+.+.   +.......++.+++.++.+++.||+  ++|+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~  321 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  321 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence            8888877766665555555 57889999988777665   4667777889999999999999999  7774

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.92  E-value=8e-23  Score=189.52  Aligned_cols=270  Identities=14%  Similarity=0.068  Sum_probs=164.0

Q ss_pred             chhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCC--------hhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHH
Q 018113           37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFG--------KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA  104 (360)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s--------~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~  104 (360)
                      ++.+.+..++.+..+.+++|    ++.+|.+.++++.+        .++.|++.+...++..++++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            34444444555566677777    34478888777432        3456788888889889999999999999999999


Q ss_pred             HHHHHHHHHHHH-HHH------------------hcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHH
Q 018113          105 CVTYCLTYILSC-ITK------------------HSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQW  162 (360)
Q Consensus       105 l~~~~~~~~~~~-l~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~  162 (360)
                      +.++.+++.++. +++                  +++|++.++++|+++|++.|...+.. +.+++|.   ++|++..+.
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~-~~~i~E~~p~~~rg~~~~~  166 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLS-PMYIAELAPAHIRGKLVSF  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCHHhhhhhHHh
Confidence            999999999876 666                  47899999999999999999998888 4499997   566665444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhh--cccCCCCchhhhhhHHHHHHHHHHHhhhhcccc------CCCCcchhHHH
Q 018113          163 LSITFSKAIFLGNGLVAILSGLFGNLLV--DSFSLGPVAPFDAAACFLAIGMVIILSSWTENY------GDPSESKDLLT  234 (360)
Q Consensus       163 ~~~~~~~~~~~g~~~g~~~~~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  234 (360)
                      .+....    .|..++..++........  ....+.|+..+.......++..... ...||++      ++++++++..+
T Consensus       167 ~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~  241 (491)
T 4gc0_A          167 NQFAII----FGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILR  241 (491)
T ss_dssp             HHHHHH----HHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhhh----hhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHH
Confidence            444433    333233333322221110  0112446666666555555444444 4555542      22222221111


Q ss_pred             HHHH----------------------HHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch--hHHHHHH
Q 018113          235 QFRG----------------------AAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH--GFIFATF  290 (360)
Q Consensus       235 ~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  290 (360)
                      +...                      ......+.++.........+.+.........|.|.+.++....+.  .......
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (491)
T 4gc0_A          242 KIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIV  321 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             HhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHH
Confidence            1100                      011122334444433334444444444455666665544322222  2344556


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCh
Q 018113          291 MLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       291 ~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      .+..+++.++.+++.||+|||+
T Consensus       322 ~~~~~~~~~~~~~l~dr~Grr~  343 (491)
T 4gc0_A          322 GVINLTFTVLAIMTVDKFGRKP  343 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSHH
T ss_pred             HHHHHHHHHHHHHHHHhhcCcc
Confidence            7788899999999999999995

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=1e-23  Score=188.82  Aligned_cols=241  Identities=12%  Similarity=0.073  Sum_probs=175.1

Q ss_pred             hhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHH
Q 018113           54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRI  132 (360)
Q Consensus        54 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~  132 (360)
                      ....|..|.+.+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+....+++. +..++++++.+++.|+
T Consensus        17 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   96 (375)
T 2gfp_A           17 TIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASA   96 (375)
T ss_dssp             HHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            333677899999999999999999999999999999999999999999999999999999987 7788899999999999


Q ss_pred             HHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHH
Q 018113          133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA  209 (360)
Q Consensus       133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  209 (360)
                      +.|++.+...+.... ++.|.   ++|++..+......        .+|..+++.+++.+.+..  +|+..+.+.+.+.+
T Consensus        97 l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~  165 (375)
T 2gfp_A           97 MQGMGTGVGGVMART-LPRDLYERTQLRHANSLLNMGI--------LVSPLLAPLIGGLLDTMW--NWRACYLFLLVLCA  165 (375)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHTSSCCSHHHHHHHHH--------HHHHHHHHHHHHHSSCHH--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHH-HHHHHCCHHHHHHHHHHHHHHH--------HHHHHhhHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence            999999988888755 77775   56777444433332        245555666666655543  46677777666655


Q ss_pred             HHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHH
Q 018113          210 IGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFI  286 (360)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  286 (360)
                      +..+......||++++++++++.    +++.++.+|+|+++.......+....... ...+.|.|.++..+.+.   +..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~  240 (375)
T 2gfp_A          166 GVTFSMARWMPETRPVDAPRTRL----LTSYKTLFGNSGFNCYLLMLIGGLAGIAA-FEACSGVLMGAVLGLSSMTVSIL  240 (375)
T ss_dssp             HHHCCCCCSSCCCSTTTCCCCCT----TTCSTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCSCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcccCCCCcccccH----HHHHHHHhcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHH
Confidence            55443434556554433322111    12334567788888776666655555544 57889998887656554   456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCC
Q 018113          287 FATFMLASMLGSSLASRLMARSPP  310 (360)
Q Consensus       287 ~~~~~~~~~~~~~~~g~l~dr~g~  310 (360)
                      .....++.+++.++.+++.||.++
T Consensus       241 ~~~~~~~~~~~~~~~~~l~~r~~~  264 (375)
T 2gfp_A          241 FILPIPAAFFGAWFAGRPNKRFST  264 (375)
T ss_dssp             HHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666778888888888888888765

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.88  E-value=1.9e-20  Score=173.61  Aligned_cols=146  Identities=22%  Similarity=0.204  Sum_probs=108.6

Q ss_pred             HHHHHHh-----hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhh-hcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHH
Q 018113           60 VYYLYST-----YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRI  132 (360)
Q Consensus        60 ~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~  132 (360)
                      .+++.++     +|.|..+.+++.+...++..+++++.|+++|| +|||+++..+.++.+++. ++++++|++.++++|+
T Consensus        37 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (491)
T 4aps_A           37 LYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSII  116 (491)
T ss_dssp             HHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHH
T ss_pred             HHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            4455555     99999999999999999999999999999999 899999999999999987 7789999999999999


Q ss_pred             HHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHH
Q 018113          133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA  209 (360)
Q Consensus       133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  209 (360)
                      +.|++.+...+.... +++|.   ++|++  +.......    .+..+|..+++.+++.+.+..  +|+..|++.+...+
T Consensus       117 l~g~~~~~~~~~~~~-~~~~~~~~~~~~r--~~~~~~~~----~~~~~g~~~~~~~~~~l~~~~--g~~~~f~~~~~~~~  187 (491)
T 4aps_A          117 LIIIGTGFLKPNVST-LVGTLYDEHDRRR--DAGFSIFV----FGINLGAFIAPLIVGAAQEAA--GYHVAFSLAAIGMF  187 (491)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHSSSCTTHH--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccchHHH-HHHHHcCcccccc--eeeehHHH----HHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHH
Confidence            999999999888755 88885   33222  11111222    233355566666666666554  46667766655444


Q ss_pred             HHHHH
Q 018113          210 IGMVI  214 (360)
Q Consensus       210 ~~~~~  214 (360)
                      +..+.
T Consensus       188 ~~~~~  192 (491)
T 4aps_A          188 IGLLV  192 (491)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.79  E-value=2.5e-19  Score=162.53  Aligned_cols=258  Identities=15%  Similarity=0.104  Sum_probs=138.7

Q ss_pred             hhhhHHHHHH-HHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH----HHHhcchHH-HH
Q 018113           54 WLQGPYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHSPQYK-IL  127 (360)
Q Consensus        54 ~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~----l~~~~~~~~-~l  127 (360)
                      +...|++|.. .+++|.|+.+.|.+.+...++..+++++.|+++||+||||+++.+....++..    ...+++... .+
T Consensus        24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (417)
T 2cfq_A           24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI  103 (417)
T ss_dssp             HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3335776664 45699999999999999999999999999999999999999998887765421    112222111 12


Q ss_pred             HHHHHHHHhHhhhhhhhhhh---HHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhh
Q 018113          128 MIGRILGGIATSLLFSAFES---WLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDA  203 (360)
Q Consensus       128 ~~~r~l~G~~~~~~~~~~~~---~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~  203 (360)
                      ...+.+.|++.+..++...+   .+..|. ++|+...+...        .+..+|..++|.+++.+.+   ++|+..|++
T Consensus       104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~g~~~~~~l~~~l~~---~~~~~~f~~  172 (417)
T 2cfq_A          104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR--------MFGCVGWALGASIVGIMFT---INNQFVFWL  172 (417)
T ss_dssp             CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHS--------SSTTTHHHHHHHHHHHHHH---HCSHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHH--------HHHHHHHHHHHHHHHHHHH---hchhHHHHH
Confidence            34455555444433332222   133322 22333211111        1223455556666665554   235566766


Q ss_pred             hHHHHHHHHHHHhhhhccccCCC--Ccc--hhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCC
Q 018113          204 AACFLAIGMVIILSSWTENYGDP--SES--KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE  279 (360)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (360)
                      .+...++.........||++++.  +++  ++..+...++.++++|+|+++............ +.....+.|.|..+..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  251 (417)
T 2cfq_A          173 GSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-YDVFDQQFANFFTSFF  251 (417)
T ss_dssp             TTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            54443333333222222221110  000  000000112344678888887765543333322 2223445666554333


Q ss_pred             Cc---ch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 018113          280 EI---PH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSV  325 (360)
Q Consensus       280 ~~---~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~  325 (360)
                      +.   +.   +.......++.+++.++.++++||+|||+  .+..+.....+
T Consensus       252 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~--~l~~~~~~~~~  301 (417)
T 2cfq_A          252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN--ALLLAGTIMSV  301 (417)
T ss_dssp             SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHH
T ss_pred             hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH--HHHHHHHHHHH
Confidence            21   11   34556666778889999999999999884  34444433333

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.72  E-value=1.3e-16  Score=149.04  Aligned_cols=168  Identities=13%  Similarity=0.171  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHhhhhhHH-HHHHHHhhC------CChhhhHHHHHHHHHHHhhhhhhhhhhhhhh-cchHHHHHHHHH
Q 018113           40 NNYLLVYSLMMAGDWLQGPY-VYYLYSTYG------FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLT  111 (360)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~  111 (360)
                      +......++..+......+. .+++.+++|      .|..+.|++.+...++..+++++.|+++||+ |||+++..+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~   94 (524)
T 2xut_A           15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI   94 (524)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            33333333333333333344 445667899      9999999999999999999999999999999 999999999999


Q ss_pred             HHHHH-HHHhcc-hHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018113          112 YILSC-ITKHSP-QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG  186 (360)
Q Consensus       112 ~~~~~-l~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  186 (360)
                      .+++. +.++++ +++.+++.|++.|++.+...+.... ++.|.   ++|++..+... ..    ..+..+|..+++.++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~-~~----~~~~~~g~~~g~~~~  168 (524)
T 2xut_A           95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS-FMGDQFDQSNKSLAQKAFD-MF----YFTINFGSFFASLSM  168 (524)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH-HHHHTCSTTTTTHHHHHHH-HH----HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHH-HHHHHcCccchHHHHHHHH-HH----HHHHHHHHHHHHHHH
Confidence            98877 778888 9999999999999999998888755 88876   44544332211 12    223446667777777


Q ss_pred             hhhhcccCCCCchhhhhhHHHHHHHHHHH
Q 018113          187 NLLVDSFSLGPVAPFDAAACFLAIGMVII  215 (360)
Q Consensus       187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (360)
                      +.+.+..  +|+..|.+.+.+.++..+..
T Consensus       169 ~~l~~~~--g~~~~f~~~~~~~~~~~~~~  195 (524)
T 2xut_A          169 PLLLKNF--GAAVAFGIPGVLMFVATVFF  195 (524)
T ss_dssp             THHHHTS--CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccc--cHHHHHHHHHHHHHHHHHHH
Confidence            7766553  46677777666555444443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.31  E-value=1.1e-10  Score=106.32  Aligned_cols=148  Identities=13%  Similarity=0.069  Sum_probs=102.1

Q ss_pred             hHHHHHHHHh-hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhh--cchHHHHHHHHHHH-HHH-HHHhc--chHHHHHH
Q 018113           57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACVTYCLTYI-LSC-ITKHS--PQYKILMI  129 (360)
Q Consensus        57 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~--Grr~~l~~~~~~~~-~~~-l~~~~--~~~~~l~~  129 (360)
                      ..+.|.+.++ +|.++.+.+...+...++..++.++.|++.||+  |||+.+..+..+.. ++. +..+.  .+.+.+.+
T Consensus       272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (451)
T 1pw4_A          272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI  351 (451)
T ss_dssp             HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence            4556777666 899999999999999998899999999999999  99999888877766 555 44444  36777778


Q ss_pred             HHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHH-HHHHHhhhhhhhhcccCCCCchhhhhhH
Q 018113          130 GRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGL-VAILSGLFGNLLVDSFSLGPVAPFDAAA  205 (360)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~l~~~~~~~~~~~~~~~~  205 (360)
                      ..++.|++.+...+.... ++.|.   ++|+...+.....       .. + |..+++.+.+.+.+..+  +...+...+
T Consensus       352 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~-------~~-~~g~~~~~~~~g~l~~~~g--~~~~~~~~~  420 (451)
T 1pw4_A          352 CMIVIGFLIYGPVMLIGL-HALELAPKKAAGTAAGFTGLF-------GY-LGGSVAASAIVGYTVDFFG--WDGGFMVMI  420 (451)
T ss_dssp             HHHHHHHHHTHHHHHHHH-HHHHTSCTTHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHHHSSC--SHHHHHHHH
T ss_pred             HHHHHHHHHhchHHHHHH-HHHHHhchhhhhhHHHHHHHH-------HH-HHHHHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence            888899888877776544 66665   3455533222222       22 4 55666666666666544  556666665


Q ss_pred             HHHHHHHHHH
Q 018113          206 CFLAIGMVII  215 (360)
Q Consensus       206 ~~~~~~~~~~  215 (360)
                      .+.++..+..
T Consensus       421 ~~~~~~~~~~  430 (451)
T 1pw4_A          421 GGSILAVILL  430 (451)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555544444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.26  E-value=1.3e-09  Score=98.84  Aligned_cols=142  Identities=13%  Similarity=0.060  Sum_probs=97.2

Q ss_pred             hHHHHHH-HHh-hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHH
Q 018113           57 GPYVYYL-YST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL  133 (360)
Q Consensus        57 ~~~~~~~-~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l  133 (360)
                      ..+.|.+ .++ +|.+..+.+...+...++..++.++.|+++||+|||+.+..+.++..++. +..+.++.+.+.. -++
T Consensus       278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  356 (438)
T 3o7q_A          278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTL  356 (438)
T ss_dssp             HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHH
T ss_pred             HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHH
Confidence            3455555 554 59999999999999888888999999999999999999999988888876 6667777665444 488


Q ss_pred             HHhHhhhhhhhhhhHHhhhc-c-ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHH
Q 018113          134 GGIATSLLFSAFESWLVAEH-N-KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI  210 (360)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~~~-~-~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  210 (360)
                      .|++.+...+...+ +..|. . +|+..    ...    ...+ .+|..++|.+.+.+.+..+ +++..+.+.....++
T Consensus       357 ~g~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~----~~~~-~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~  424 (438)
T 3o7q_A          357 CSAFMSIQYPTIFS-LGIKNLGQDTKYG----SSF----IVMT-IIGGGIVTPVMGFVSDAAG-NIPTAELIPALCFAV  424 (438)
T ss_dssp             HHHHHTTHHHHHHH-HHHSSCGGGHHHH----HHH----HHHT-THHHHHHHHHHHHHHHHHT-SSGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHHhhccccccch----hhH----HHHH-HHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHH
Confidence            88888888887755 65554 2 22221    111    1122 2666777777777777655 134455554444333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.02  E-value=3.7e-09  Score=95.53  Aligned_cols=141  Identities=9%  Similarity=-0.000  Sum_probs=91.7

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHH
Q 018113           71 KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWL  149 (360)
Q Consensus        71 ~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~  149 (360)
                      ..+.+...+...+...++.++.|+++||+|||+++..+..+.+++. +.++.++.+.+++..++.+++.+...+.... +
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~  336 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK-Y  336 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH-H
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            3445666666666677777889999999999999998888877766 5567778777877778888776665555534 6


Q ss_pred             hhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhcc
Q 018113          150 VAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE  221 (360)
Q Consensus       150 i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (360)
                      ++|.   +.|+.       .++.....+..+|..++|.+.+.+.+..+  +...|...+.+.++..+......+|
T Consensus       337 ~~~~~p~~~~g~-------~~g~~~~~~~~lg~~~gp~l~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          337 ITSQFEVRFSAT-------IYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHSCHHHHHH-------HHHHHHTTTHHHHHHHHTHHHHTHHHHSH--HHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHCCHHHHHH-------HHHHHHHHHHhHHHHHhhhhHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            7765   22332       22222233444666777777777666433  4455666666655555554333443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.99  E-value=1.3e-08  Score=93.77  Aligned_cols=146  Identities=10%  Similarity=-0.105  Sum_probs=88.8

Q ss_pred             HHHHHHHH-hhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHH-----HHHHHHHHHH-HHHhc---------
Q 018113           58 PYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV-----TYCLTYILSC-ITKHS---------  121 (360)
Q Consensus        58 ~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~-----~~~~~~~~~~-l~~~~---------  121 (360)
                      ...|...+ .++.+..+.+.......+...+++++.|++.||+|||+...     .+..+.+++. +....         
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (491)
T 4aps_A          304 VVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGK  383 (491)
T ss_dssp             THHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTT
T ss_pred             HHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            33444444 46776666777777777777788888999999999987654     5666666655 33332         


Q ss_pred             chHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCc
Q 018113          122 PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPV  198 (360)
Q Consensus       122 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~  198 (360)
                      .+.+.+.+.-++.|++.+...+.... ++.|.   +.|+...+......    .    +|..+++.+.+.+.+.   +..
T Consensus       384 ~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~~~~~----~----~g~~i~~~~~~~~~~~---~~~  451 (491)
T 4aps_A          384 VSPLWLVGSWALVILGEMLISPVGLS-VTTKLAPKAFNSQMMSMWFLSS----S----VGSALNAQLVTLYNAK---SEV  451 (491)
T ss_dssp             CCTHHHHHHHHHHHHHHHTTTTHHHH-HHHHHTTTTCSSSSTHHHHHHH----H----HHHHHHHHHGGGGGGS---STT
T ss_pred             ccHHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHhcc---cHH
Confidence            26677778889999998887777755 77665   55777555443332    3    4444444444444332   233


Q ss_pred             hhhhhhHHHHHHHHHHH
Q 018113          199 APFDAAACFLAIGMVII  215 (360)
Q Consensus       199 ~~~~~~~~~~~~~~~~~  215 (360)
                      ..+...+.+.++..+..
T Consensus       452 ~~~~~~~~~~~~~~~~~  468 (491)
T 4aps_A          452 AYFSYFGLGSVVLGIVL  468 (491)
T ss_dssp             HHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44555555544444444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.94  E-value=1.9e-08  Score=92.64  Aligned_cols=165  Identities=13%  Similarity=0.024  Sum_probs=93.9

Q ss_pred             HHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHh---c-chHHHHHHHHH
Q 018113           58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH---S-PQYKILMIGRI  132 (360)
Q Consensus        58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~---~-~~~~~l~~~r~  132 (360)
                      .+.|.+.++.+.+..+.........+...++.++.+.+.||+|||+.++.+.....++. ..+.   . .+....++.-+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  377 (491)
T 4gc0_A          298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML  377 (491)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            44778888888888777766666667677888889999999999999998888777654 2221   1 11122222222


Q ss_pred             HHHhHhhhhh-hhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHH
Q 018113          133 LGGIATSLLF-SAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL  208 (360)
Q Consensus       133 l~G~~~~~~~-~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  208 (360)
                      +...+.+... +.. ..+.+|.   +.|+...+.......    +++.+++.+.|.+..........++...|++.+.+.
T Consensus       378 ~~~~~~~~~~~~~~-~~~~~E~fPt~~R~~~~g~~~~~~~----~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~  452 (491)
T 4gc0_A          378 FYVAAFAMSWGPVC-WVLLSEIFPNAIRGKALAIAVAAQW----LANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG  452 (491)
T ss_dssp             HHHHHHHTTTTHHH-HHHHHHSSCTTTHHHHHHHHHHHHH----HHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            2222222222 333 3477886   456554333322222    233333333333322111111123445677777777


Q ss_pred             HHHHHHHhhhhccccCCCC
Q 018113          209 AIGMVIILSSWTENYGDPS  227 (360)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~  227 (360)
                      ++..++.....||+++++-
T Consensus       453 ~~~~i~~~~~~PETkg~tL  471 (491)
T 4gc0_A          453 VLAALFMWKFVPETKGKTL  471 (491)
T ss_dssp             HHHHHHHHHHCCCCTTCCH
T ss_pred             HHHHHHHHheecCCCCCCH
Confidence            7777777678899887653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.55  E-value=3.1e-08  Score=87.95  Aligned_cols=124  Identities=12%  Similarity=0.054  Sum_probs=80.2

Q ss_pred             HHHHHHHH-hhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHH-HHHHH---HHHh--cchHHHHHHH
Q 018113           58 PYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT-YILSC---ITKH--SPQYKILMIG  130 (360)
Q Consensus        58 ~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~-~~~~~---l~~~--~~~~~~l~~~  130 (360)
                      .+.|.+.+ ++|.|+.+.+...+...++..++.++.|++.||+|+|  +..+... ...+.   ....  .++.+.+.+.
T Consensus       220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (375)
T 2gfp_A          220 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVP  297 (375)
T ss_dssp             HHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHH
Confidence            33444444 4888999999999988888888999999999999883  2333333 22222   1222  2366677788


Q ss_pred             HHHHHhHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 018113          131 RILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS  192 (360)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~  192 (360)
                      .++.|++.+...+.... ++.|.  ++|+...+...        ....+|..+++.+.+.+.+.
T Consensus       298 ~~l~g~~~~~~~~~~~~-~~~~~~p~~~g~~~g~~~--------~~~~~g~~~~~~~~g~l~~~  352 (375)
T 2gfp_A          298 AALFFFGAGMLFPLATS-GAMEPFPFLAGTAGALVG--------GLQNIGSGVLASLSAMLPQT  352 (375)
T ss_dssp             HHHHHHHHHHTSSTTHH-HHHTHHHHHHHHHHHHHH--------HHHHHHHHCCSTTCTHHHHH
T ss_pred             HHHHHHHHHHhhHHHHH-HHHHhCCcccchHHHHHH--------HHHHHHHHHHHHHHHHHhcC
Confidence            88999999888787755 66665  44444222222        23336667777777766554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.22  E-value=8.5e-06  Score=75.60  Aligned_cols=93  Identities=10%  Similarity=-0.048  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhh----hhhcc----hHHHHHHHHHHHHHH-HHHhc---------chHHHHHHHHHHHH
Q 018113           74 IGQLFIAGFGSSMLFGTIVGSLA----DKQGR----KRACVTYCLTYILSC-ITKHS---------PQYKILMIGRILGG  135 (360)
Q Consensus        74 ~g~~~~~~~~~~~~~~~~~G~l~----Dr~Gr----r~~l~~~~~~~~~~~-l~~~~---------~~~~~l~~~r~l~G  135 (360)
                      .+.......+...+.+++.+++.    ||.|+    ++.+..+.++.+++. +.++.         .+.+.+.+..++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  416 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT  416 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence            44444444444445555666654    55543    345666767666665 44442         36677788889999


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITF  167 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~  167 (360)
                      ++.+...+.... ++.|.   ++|+...+......
T Consensus       417 ~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~~~~~  450 (524)
T 2xut_A          417 FGEVLVSATGLE-FAYSQAPKAMKGTIMSFWTLSV  450 (524)
T ss_dssp             HHHHHHHHHHTT-THHHHCCTTCCTTTHHHHGGGH
T ss_pred             HHHHHHHHHHHH-HHHHhCcHHHHhHHHHHHHHHH
Confidence            999888777755 66664   56777555444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	360
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.79
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.29
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.96

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=5.9e-25  Score=198.81  Aligned_cols=269  Identities=12%  Similarity=0.098  Sum_probs=179.5

Q ss_pred             cccccchhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHH
Q 018113           32 SSAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT  107 (360)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~  107 (360)
                      ++..+|++|.++..+++..+...++    +...|.+ +|+|+|++|.|++.+...++..+++++.|+++||+|||+++..
T Consensus        16 ~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   94 (447)
T d1pw4a_          16 DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA   94 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            3445667788877777777766655    2335655 5789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHhc----chHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHH
Q 018113          108 YCLTYILSC-ITKHS----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVA  179 (360)
Q Consensus       108 ~~~~~~~~~-l~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~  179 (360)
                      +.++.+++. +++++    ++++.+++.|++.|++.+..++.... ++.|.   ++|++..+....    +..+|.    
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~----~~~~g~----  165 (447)
T d1pw4a_          95 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVSVWNC----AHNVGG----  165 (447)
T ss_dssp             HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH-HHHTTCTTTHHHHHHHHHHH----HHHHHH----
T ss_pred             HHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHhhccccccccccc----ccchhh----
Confidence            999988876 55554    47789999999999999998888855 88876   556664433333    333333    


Q ss_pred             HHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccC---CC---C-c---chhHHHH-------HHHHHHH
Q 018113          180 ILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYG---DP---S-E---SKDLLTQ-------FRGAAVA  242 (360)
Q Consensus       180 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~-~---~~~~~~~-------~~~~~~~  242 (360)
                      .+++.++....+.. .+|+..+.+.+.+..+..+......++.++   ..   + +   .++..++       .+...+.
T Consensus       166 ~i~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (447)
T d1pw4a_         166 GIPPLLFLLGMAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQY  244 (447)
T ss_dssp             TSHHHHHHHHHHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHH
T ss_pred             hhhhhhhhhHhhhh-hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHH
Confidence            33443333333222 234455655554444443333222222111   00   0 0   0000000       1112456


Q ss_pred             HhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018113          243 IASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV  312 (360)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  312 (360)
                      .++++.++.......+.....+. ...+.|.|.++..+.+.   +.......+..+++.++.+++.||.+|++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  316 (447)
T d1pw4a_         245 VLPNKLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN  316 (447)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred             HHcCchHHHHHHHhhhhhhhhhc-chhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc
Confidence            77888888877666666555555 57889999888777665   46667778889999999999999999875

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=6.3e-18  Score=149.79  Aligned_cols=281  Identities=16%  Similarity=0.063  Sum_probs=145.1

Q ss_pred             chhHHHHHHHHHHHHHhhhhhHHHHH-HHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHH
Q 018113           37 SFKNNYLLVYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS  115 (360)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~  115 (360)
                      |..|.+....++..+..+...|++|. +.+++|+|++++|++.+...++..+.+++.|+++||+||||+++.+.....++
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   86 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            34455555555555666666788776 56779999999999999999999999999999999999999999998888776


Q ss_pred             H-HHHhcchHHHH----HHHHHHHHhHhhhhhhhhhhHHhhhc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018113          116 C-ITKHSPQYKIL----MIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG  186 (360)
Q Consensus       116 ~-l~~~~~~~~~l----~~~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  186 (360)
                      . +..+.++....    +..+.+.+.+.+..............    +++......    .......+.    .+++.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~  158 (417)
T d1pv7a_          87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGR----ARMFGCVGW----ALGASIV  158 (417)
T ss_dssp             HHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHH----HHHHHHHHH----HHHHHHH
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHH----Hhhhhcccc----ccccccc
Confidence            5 55555554433    34444444444444333322121111    222222222    222222333    3444444


Q ss_pred             hhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCCCcchhHHHH----HHHHHHHHhcchhHHHHHHHHHHHHhh
Q 018113          187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQ----FRGAAVAIASDEKIALLGAIQSLFEGS  262 (360)
Q Consensus       187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (360)
                      +.+.+   +.|+..+........+.........++++.+++++++..++    ......+..+++..+............
T Consensus       159 ~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (417)
T d1pv7a_         159 GIMFT---INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT  235 (417)
T ss_dssp             HHHHH---HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred             ccccc---ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccchhhhhHHHHHH
Confidence            43333   23334444444333333333333444433222222111100    011122334444333332222222211


Q ss_pred             HHHH--HHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHh
Q 018113          263 MYTF--VFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLP  330 (360)
Q Consensus       263 ~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~  330 (360)
                      ....  .....+.+..+..+.+.   +.......++..++....+++.||.++|+  .+..+..+..+.....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~  306 (417)
T d1pv7a_         236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN--ALLLAGTIMSVRIIGS  306 (417)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH--HHHHHHHHHHHHHHHH
T ss_pred             HHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccccccc--chhhhHHHHHHhhhcc
Confidence            1111  11112222222222222   34556667778889999999999999884  4444444444444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=3.2e-11  Score=105.72  Aligned_cols=142  Identities=9%  Similarity=0.029  Sum_probs=101.4

Q ss_pred             ChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhH
Q 018113           70 GKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESW  148 (360)
Q Consensus        70 s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  148 (360)
                      +..+.+.......++..++..+.+++.||+|+|+.+..+.++.+++. +..+.++.+.+.+..++.|++.+...+.... 
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-  335 (417)
T d1pv7a_         257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK-  335 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHH-
Confidence            34455666677777778888899999999999999999999988877 7788999999999999999999988887755 


Q ss_pred             Hhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhcc
Q 018113          149 LVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE  221 (360)
Q Consensus       149 ~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (360)
                      ++.|.   ++|+.       ..+....++..+|..+++.+.+++.|..|+  +..+++.+.+.++..++.....++
T Consensus       336 ~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         336 YITSQFEVRFSAT-------IYLVCFCFFKQLAMIFMSVLAGNMYESIGF--QGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHSCGGGHHH-------HHHHHHTTTHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHCCHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHhhcC
Confidence            77775   33443       222223344456667777777777776554  455666665555555544344433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=2.5e-08  Score=88.29  Aligned_cols=143  Identities=14%  Similarity=0.021  Sum_probs=89.7

Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHH---HH-HH--HhcchHHHHHHHHHHHH
Q 018113           62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL---SC-IT--KHSPQYKILMIGRILGG  135 (360)
Q Consensus        62 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~---~~-l~--~~~~~~~~l~~~r~l~G  135 (360)
                      ++.++++.+..+.+.......+...++.++.|++.||++||+...........   +. ..  ...++.+...++-++.|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  354 (447)
T d1pw4a_         275 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG  354 (447)
T ss_dssp             HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred             hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            34456899999999999998888889999999999999987654444333322   22 11  12456677777788888


Q ss_pred             hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHH
Q 018113          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (360)
Q Consensus       136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (360)
                      ++.+...+.... +..|.   +.|+..       .+.....++..|.++++.+.+.+.+..||  ...+.......++..
T Consensus       355 ~~~~~~~~~~~~-~~~~~~p~~~~g~~-------~g~~~~~~~~~g~~~~~~~~g~~~~~~g~--~~~~~~~~~~~~~~~  424 (447)
T d1pw4a_         355 FLIYGPVMLIGL-HALELAPKKAAGTA-------AGFTGLFGYLGGSVAASAIVGYTVDFFGW--DGGFMVMIGGSILAV  424 (447)
T ss_dssp             HHHTHHHHHHHH-HHHHTSCTTHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHSSCS--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHcCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHH
Confidence            887777666534 66665   334442       22222334434556667777777776554  455555444444333


Q ss_pred             HH
Q 018113          213 VI  214 (360)
Q Consensus       213 ~~  214 (360)
                      ++
T Consensus       425 ~~  426 (447)
T d1pw4a_         425 IL  426 (447)
T ss_dssp             HH
T ss_pred             HH
Confidence            33