Citrus Sinensis ID: 018116
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | 2.2.26 [Sep-21-2011] | |||||||
| B6VJS4 | 357 | Trans-resveratrol di-O-me | no | no | 0.977 | 0.985 | 0.454 | 8e-94 | |
| Q84KK5 | 357 | Isoflavone 7-O-methyltran | N/A | no | 0.958 | 0.966 | 0.471 | 3e-93 | |
| O22309 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.947 | 0.968 | 0.463 | 4e-90 | |
| O22308 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.947 | 0.968 | 0.461 | 9e-90 | |
| O24529 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.947 | 0.968 | 0.458 | 3e-89 | |
| Q84KK4 | 365 | Isoflavone 4'-O-methyltra | N/A | no | 0.958 | 0.945 | 0.487 | 2e-88 | |
| O24305 | 360 | 6a-hydroxymaackiain methy | N/A | no | 0.975 | 0.975 | 0.470 | 3e-87 | |
| C6TAY1 | 358 | Flavonoid 4'-O-methyltran | no | no | 0.972 | 0.977 | 0.453 | 3e-86 | |
| P0DH60 | 360 | 6a-hydroxymaackiain methy | N/A | no | 0.975 | 0.975 | 0.476 | 1e-84 | |
| Q84KK6 | 367 | Isoflavone 4'-O-methyltra | N/A | no | 0.961 | 0.942 | 0.481 | 2e-82 |
| >sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 343 bits (881), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 230/352 (65%)
Query: 9 GISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPT 68
G+ EL V +FN + +MSLK A++LGI DIIH+HG+P+TL ELV+ L + P
Sbjct: 6 GVISAELLHAQAHVWNHIFNFIKSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKLPVHPK 65
Query: 69 KTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPE 128
++ ++R MR+LVH G + +V KEEE Y LT S LL+ D S + PLV +LDP
Sbjct: 66 RSQCVYRLMRILVHSGFLAAQRVQQGKEEEGYVLTDASRLLLMDDSLSIRPLVLAMLDPI 125
Query: 129 NIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDC 188
P H++S WF+ +D + + T + +++WDY P L+ FN+AM SD+ + ++
Sbjct: 126 LTKPWHYLSAWFQNDDPTPFHTAYERSFWDYAGHEPQLNNSFNEAMASDARLLTSVLLKE 185
Query: 189 CRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMF 248
+ +F GL S+VDVGGG G +K I+ AFP + CTVLDL H VA + ++NL Y AGDMF
Sbjct: 186 GQGVFAGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDLSHVVAGLQGSKNLNYFAGDMF 245
Query: 249 QYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVT 308
+ IPPADA K + H + +E+C+KILK+CREAI GKV+I+D+++ + + ++ T
Sbjct: 246 EAIPPADAILLKWILHDWSNEECVKILKRCREAIPSKENGGKVIIIDMIMMKNQGDYKST 305
Query: 309 EAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
E +L D M + G+ER + EW+ LFLDAGF+HYKIT + GL+SLIEVYP
Sbjct: 306 ETQLFFDMTMMIFAPGRERDENEWEKLFLDAGFSHYKITPILGLRSLIEVYP 357
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Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME). Vitis vinifera (taxid: 29760) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 0 |
| >sp|Q84KK5|D7OMT_GLYEC Isoflavone 7-O-methyltransferase OS=Glycyrrhiza echinata GN=D7OMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (876), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 164/348 (47%), Positives = 235/348 (67%), Gaps = 3/348 (0%)
Query: 14 ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNL 73
E+F+G + R ++ + +M LK VEL I +IIH+HG+PIT+SELVS LK+ TK N+
Sbjct: 12 EIFQGQALLYRHIYAFIDSMCLKWIVELDIPNIIHNHGKPITVSELVSILKVPQTKAGNV 71
Query: 74 FRFMRLLVHMGLFSKTKVGGEKEE-EAYGLTAISALLIKDKSYCLSPLVSGILDPENIFP 132
R MR + H G F + ++ E+EE EAY LTA S LL+K CL+P+V +LDP
Sbjct: 72 QRIMRYMAHNGFFERVRIQEEQEENEAYALTAASELLVKGSELCLAPMVECVLDPTLSGS 131
Query: 133 LHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKI 192
H + KW D++++ G ++W+++N+NP ++ FN AM SDS+M ++DC
Sbjct: 132 YHQLKKWIYEEDLTLFGVSLGSHFWEFLNENPEYNKSFNDAMASDSQMINLALRDC-NSG 190
Query: 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIP 252
FEG+ SIVDVGGG G +KII + FP +KC V D P V N+ T NL Y+ GDMFQ +P
Sbjct: 191 FEGVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTNNLSYVGGDMFQSVP 250
Query: 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKL 312
ADA K + H + D DC +IL+KC+EA++ +GE+GKV+I+++VINE +D+H++T KL
Sbjct: 251 KADAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINENQDEHEITGTKL 310
Query: 313 LGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
L D M+ ++GKER++EEWK LF++AGF YKI+ + G SLIEVYP
Sbjct: 311 LMDVNMAC-LNGKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVYP 357
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7-O-methyltransferase involved in the biosynthesis of isoformononetin. Can use daidzein as substrate, but not medicarpin or 2,7,4'-trihydroxyisoflavanone. Glycyrrhiza echinata (taxid: 46348) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O22309|7OMT9_MEDSA Isoflavone-7-O-methyltransferase 9 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (850), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 161/347 (46%), Positives = 229/347 (65%), Gaps = 6/347 (1%)
Query: 14 ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNL 73
E+F+ + + ++ + +MSLK AV + I +IIH+HG+PI+LS LVS L++ +K N+
Sbjct: 12 EIFKAQALLYKHIYAFIDSMSLKWAVGMNIPNIIHNHGKPISLSNLVSILQVPSSKIGNV 71
Query: 74 FRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPL 133
R MR L H G F KEEE+Y LT S LL++ CL+P+V +LDP
Sbjct: 72 RRLMRYLAHNGFFEIIT----KEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSY 127
Query: 134 HFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIF 193
H + KW D++++ G +WD++++NP + FN AM SDS++ ++DC +F
Sbjct: 128 HELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDC-DFVF 186
Query: 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIPP 253
+GL SIVDVGGG G +KII E FP +KC V D P V N+ + NL Y+ GDMF IP
Sbjct: 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPN 246
Query: 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLL 313
ADA K + H + D+DCL+ILKKC+EA+ +G+RGKV I+D+VINEK+D++QVT+ KLL
Sbjct: 247 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVINEKKDENQVTQIKLL 306
Query: 314 GDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
D M+ ++GKER +EEWK LF++AGF HYKI+ + G SLIE+YP
Sbjct: 307 MDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 330 bits (847), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 160/347 (46%), Positives = 229/347 (65%), Gaps = 6/347 (1%)
Query: 14 ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNL 73
E+F+ + + ++ + +MSLK AVE+ I +II +HG+PI+LS LVS L++ +K N+
Sbjct: 12 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV 71
Query: 74 FRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPL 133
R MR L H G F KEEE+Y LT S LL++ CL+P+V +LDP
Sbjct: 72 RRLMRYLAHNGFFEIIT----KEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSY 127
Query: 134 HFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIF 193
H + KW D++++ G +WD++++NP + FN AM SDS++ ++DC +F
Sbjct: 128 HELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDC-DFVF 186
Query: 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIPP 253
+GL SIVDVGGG G +KII E FP +KC V D P V N+ + NL Y+ GDMF IP
Sbjct: 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPN 246
Query: 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLL 313
ADA K + H + D+DCL+ILKKC+EA+ +G+RGKV I+D+VI+EK+D++QVT+ KLL
Sbjct: 247 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDEKKDENQVTQIKLL 306
Query: 314 GDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
D M+ ++GKER +EEWK LF++AGF HYKI+ + G SLIE+YP
Sbjct: 307 MDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O24529|7OMT8_MEDSA Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
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Score = 328 bits (842), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 159/347 (45%), Positives = 229/347 (65%), Gaps = 6/347 (1%)
Query: 14 ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNL 73
E+F+ + + ++ + +MSLK AVE+ I +II +HG+PI+LS LVS L++ +K N+
Sbjct: 12 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV 71
Query: 74 FRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPL 133
R MR L H G F KEEE+Y LT S LL++ CL+P+V +LDP
Sbjct: 72 RRLMRYLAHNGFFEIIT----KEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSY 127
Query: 134 HFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIF 193
H + KW D++++ G +WD++++NP + FN AM SDS++ ++DC +F
Sbjct: 128 HELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDC-DFVF 186
Query: 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIPP 253
+GL SIVDVGGG G +KII E FP +KC V D P V N+ + NL Y+ GDMF IP
Sbjct: 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPN 246
Query: 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLL 313
ADA K + H + D+DCL+ILKKC+EA+ +G+RGKV I+D+VI++K+D++QVT+ KLL
Sbjct: 247 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLL 306
Query: 314 GDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
D M+ ++GKER +EEWK LF++AGF HYKI+ + G SLIE+YP
Sbjct: 307 MDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|Q84KK4|I4OMT_LOTJA Isoflavone 4'-O-methyltransferase OS=Lotus japonicus GN=HI4'OMT PE=1 SV=1 | Back alignment and function description |
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Score = 326 bits (835), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 240/355 (67%), Gaps = 10/355 (2%)
Query: 14 ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNL 73
EL + + + V+N +S+M+LK A+ELGIAD+IHSHG+PITL EL +AL ++P+K L
Sbjct: 13 ELSQAQIHLYKHVYNFVSSMALKSAMELGIADVIHSHGKPITLPELATALNLRPSKIGVL 72
Query: 74 FRFMRLLVHMGLFSKTKVG---GEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENI 130
RF+RLL H G F+KT V G +EE AYGLT S LL+K S CL+P+V G L P ++
Sbjct: 73 HRFLRLLTHNGFFAKTTVSRGEGAEEETAYGLTPPSKLLVKSNSTCLAPIVKGALHPSSL 132
Query: 131 FPLHFISKWF--KGNDISVWETVHGKNYWDYMN---QNPGLSQRFNQAMISDSEMAIFIV 185
KWF +++++E+ G+++W+++N ++ LS F +AM +DS M +
Sbjct: 133 DMWRSSKKWFLEDNEELTLFESATGESFWEFLNKETESDTLSM-FQEAMAADSHMFKLAL 191
Query: 186 KDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAG 245
K+C + +FEGLGS+VDV GG GG +K+I EAFP +KCTV D P VAN+ ENL ++ G
Sbjct: 192 KEC-KHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTGDENLNFVGG 250
Query: 246 DMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH 305
DMF+ +PPADA K V H + DE LKILK C+EAI+G G+ GKV+I+DI I+E D
Sbjct: 251 DMFKSVPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVIIIDISIDETSDDR 310
Query: 306 QVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
++TE KL D +M +GKER +EW+ L DAGF+ YKIT + G KSLIEV+P
Sbjct: 311 ELTELKLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSYKITPICGFKSLIEVFP 365
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2-hydroxyisoflavanone 4'-O-methyltransferase involved in the biosynthesis of formononetin. Can use 2,7,4'-trihydroxyisoflavanone as substrate, but not daidzein. Lotus japonicus (taxid: 34305) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 2 |
| >sp|O24305|M3OM1_PEA 6a-hydroxymaackiain methyltransferase 1 OS=Pisum sativum GN=HMM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (824), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 228/355 (64%), Gaps = 4/355 (1%)
Query: 9 GISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPT 68
G EL+ + + V+N +S+M+LK A+ELGIAD IH+HG+P+TL EL S+LK+ P+
Sbjct: 7 GSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLPELSSSLKLHPS 66
Query: 69 KTSNLFRFMRLLVHMGLFSKTKVGGEK--EEEAYGLTAISALLIKDKSYCLSPLVSGILD 126
K + L+RF+RLL H G F+KT V + EE AY LT S LL+ KS CLS LV G L
Sbjct: 67 KVNILYRFLRLLTHNGFFAKTTVKSNEGEEETAYVLTPSSKLLVSGKSTCLSSLVKGALH 126
Query: 127 PENIFPLHFISKWF-KGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIV 185
P ++ KWF + + +++E G+NYWD++N++ F AM +DS + +
Sbjct: 127 PSSLDMWGVSKKWFHEDKEQTLFECATGENYWDFLNKDSDSLSMFQDAMAADSRLFKLAI 186
Query: 186 KDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAG 245
++ + +FEGL S+VDV GG GG +K+I EAFP IKCTV D P V N+ ENL ++ G
Sbjct: 187 QEN-KHVFEGLESLVDVAGGTGGVAKLIHEAFPHIKCTVFDQPQVVGNLTGNENLNFVGG 245
Query: 246 DMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH 305
DMF+ +P ADA K V H + DE LKILK +EAI+ G+ GKV+I+DI I+E D
Sbjct: 246 DMFKSVPSADAVLLKWVLHDWNDELSLKILKNSKEAISHKGKDGKVIIIDISIDENSDDR 305
Query: 306 QVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
+TE +L D +M GKERT +EW+ L DAGF+ YKIT + G KSLIEVYP
Sbjct: 306 GLTELQLEYDVVMLTMFLGKERTKKEWEKLIYDAGFSRYKITPICGFKSLIEVYP 360
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Methyltransferase involved in the phytoalexin pisatin biosynthesis. Has both 3- and 4'-O-methyltransferase activities. Can use (+)-6a-hydroxymaackiain, 2,7,4'-trihydroxyisoflavanone and with much less activity (+)-medicarpin as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. May be involved in formononetin biosynthesis. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|C6TAY1|SOMT2_SOYBN Flavonoid 4'-O-methyltransferase OS=Glycine max PE=1 SV=1 | Back alignment and function description |
|---|
Score = 318 bits (816), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 161/355 (45%), Positives = 224/355 (63%), Gaps = 5/355 (1%)
Query: 8 GGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSH--GRPITLSELVSALKI 65
G E+F+G + + + + + LK VEL I DIIHSH G+PIT SELVS L++
Sbjct: 7 NGRKASEIFQGQALLYKHLLGFIDSKCLKWMVELDIPDIIHSHSHGQPITFSELVSILQV 66
Query: 66 QPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGIL 125
PTKT + MR L H G F ++ EAY LTA S LL+K L+P+V L
Sbjct: 67 PPTKTRQVQSLMRYLAHNGFFEIVRI--HDNIEAYALTAASELLVKSSELSLAPMVEYFL 124
Query: 126 DPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIV 185
+P + + +W D++V+ G +WD++N++P ++ FN+AM DS+M
Sbjct: 125 EPNCQGAWNQLKRWVHEEDLTVFGVSLGTPFWDFINKDPAYNKSFNEAMACDSQMLNLAF 184
Query: 186 KDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAG 245
+DC +FEGL SIVDVGGG G +KII EAFP +KC VL+ P+ V N+ + NL ++ G
Sbjct: 185 RDC-NWVFEGLESIVDVGGGTGITAKIICEAFPKLKCMVLERPNVVENLSGSNNLTFVGG 243
Query: 246 DMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH 305
DMF+ IP ADA KLV H + D DC+KIL+ C+EAI+G + GKV+++D VINE +D+
Sbjct: 244 DMFKCIPKADAVLLKLVLHNWNDNDCMKILENCKEAISGESKTGKVVVIDTVINENKDER 303
Query: 306 QVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
QVTE KLL D M+ ++GKER +E+WK LF++AGF YKI+ G SLIE+YP
Sbjct: 304 QVTELKLLMDVHMACIINGKERKEEDWKKLFMEAGFQSYKISPFTGYLSLIEIYP 358
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S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the 4'-methylation of naringenin (4',5,7-trihydroxyflavanone) into ponciretin (4'-methoxy-5,7-dihydroxyflavanone). In vitro, also able to convert apigenin, daidzein, genistein and quercetin into the 4'-O-methylated compounds acacetin, formononetin, biochanine A and 4'-methylated quercetin, respectively. Glycine max (taxid: 3847) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 3 EC: 1 |
| >sp|P0DH60|M3OM2_PEA 6a-hydroxymaackiain methyltransferase 2 OS=Pisum sativum GN=HMM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (802), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 233/355 (65%), Gaps = 4/355 (1%)
Query: 9 GISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPT 68
G EL+ + + ++N +S+M+LK AVELGIAD IH+HG+P+TL EL S+LK+ P+
Sbjct: 7 GSEESELYHAQIHLYKHIYNFVSSMALKSAVELGIADAIHNHGKPMTLPELASSLKLHPS 66
Query: 69 KTSNLFRFMRLLVHMGLFSKTKV--GGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILD 126
K + L+RF+RLL H G F+KT V GE+EE AY LT S LL+ KS CLS +V G L
Sbjct: 67 KVNILYRFLRLLTHNGFFAKTTVKSNGEEEETAYVLTPSSKLLVSGKSTCLSSVVKGALH 126
Query: 127 PENIFPLHFISKWF-KGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIV 185
P ++ KWF + + +++E G+NYWD++N++ F AM +DS + +
Sbjct: 127 PISLDLWGVSKKWFHEDKEQTLFECATGENYWDFLNKDSDYLSIFQDAMAADSRLFKLAI 186
Query: 186 KDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAG 245
++ + +FEGL S+VDV GG GG +K+I EAFP IKCTV D P V N+ ENL +++G
Sbjct: 187 QEN-KHVFEGLESLVDVAGGTGGVAKLIHEAFPHIKCTVFDQPQVVGNLTGNENLNFVSG 245
Query: 246 DMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH 305
DMF+ +P ADA K V H + DE LKILKK +EAI+ G+ GKV+I+DI I++ D H
Sbjct: 246 DMFKSVPSADAVLLKWVLHDWNDELSLKILKKSKEAISHKGKDGKVIIIDISIDDNSDDH 305
Query: 306 QVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
+TE +L D +M GKERT +EW+ L DAGF+ YKIT + G KSLIEVYP
Sbjct: 306 GLTELQLEYDVVMLTMFLGKERTKKEWEKLIYDAGFSRYKITPICGFKSLIEVYP 360
|
3-O-methyltransferase involved in the phytoalexin pisatin biosynthesis. Can use (+)-6a-hydroxymaackiain, (+)-maackiain and with a lower activity (+)-medicarpin and 2,7,4'-trihydroxyisoflavanone as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q84KK6|I4OMT_GLYEC Isoflavone 4'-O-methyltransferase OS=Glycyrrhiza echinata GN=HI4'OMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (782), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 172/357 (48%), Positives = 239/357 (66%), Gaps = 11/357 (3%)
Query: 14 ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNL 73
EL+ + + V+N +S+M+LK A+ELGIAD+IH+HG+PITL EL SALK+ P+K L
Sbjct: 12 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADVIHNHGKPITLPELASALKLHPSKVGIL 71
Query: 74 FRFMRLLVHMGLFSKTKV-------GGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILD 126
+RF+RLL H G F+KT V G E+EE AY LT S LL+K K CL+ +V G L
Sbjct: 72 YRFLRLLTHNGFFAKTTVPSQNGKDGEEEEETAYALTPPSKLLVKGKPTCLASIVRGALH 131
Query: 127 PENIFPLHFISKWFKGN-DISVWETVHGKNYWDYMNQNP--GLSQRFNQAMISDSEMAIF 183
P ++ KWFK + +++++E+ G+++WD++N++ G F +AM +DS+M
Sbjct: 132 PSSLDMWRSSEKWFKEDKELTLFESATGESFWDFLNKDSESGTLSMFQEAMAADSQMFKL 191
Query: 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYI 243
+K+C R +FEGL S+VDVGGG GG +K+I E FP +KCTV D P V N+ ENLK++
Sbjct: 192 ALKEC-RHVFEGLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQPQVVGNLSGNENLKFV 250
Query: 244 AGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKED 303
GDMF+ IPPADA K V H + DE LKILK +EAI+G G+ GKV+I+DI I+E
Sbjct: 251 GGDMFKSIPPADAVLLKWVLHDWNDELSLKILKNSKEAISGKGKEGKVIIIDISIDEASG 310
Query: 304 KHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
++TE +L D +M +GKER +EW+ L DAGF+ YKIT + G KSLIEV+P
Sbjct: 311 DRELTELQLDYDLVMLTMFNGKEREKKEWEKLISDAGFSSYKITPICGFKSLIEVFP 367
|
2-hydroxyisoflavanone 4'-O-methyltransferase involved in the biosynthesis of formononetin. Can use 2,7,4'-trihydroxyisoflavanone, (+)-6a-hydroxymaackiain or medicarpin as substrate, but not daidzein or (-)-6a-hydroxymaackiain. Glycyrrhiza echinata (taxid: 46348) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | ||||||
| 224077038 | 359 | flavonoid o-methyltransferase related [P | 0.958 | 0.961 | 0.551 | 1e-110 | |
| 224116348 | 372 | flavonoid o-methyltransferase related [P | 0.958 | 0.927 | 0.547 | 1e-109 | |
| 225443568 | 361 | PREDICTED: isoflavone-7-O-methyltransfer | 0.988 | 0.986 | 0.539 | 1e-109 | |
| 255562994 | 359 | o-methyltransferase, putative [Ricinus c | 0.988 | 0.991 | 0.515 | 1e-107 | |
| 359483947 | 355 | PREDICTED: isoflavone-7-O-methyltransfer | 0.972 | 0.985 | 0.534 | 1e-105 | |
| 225443570 | 354 | PREDICTED: isoflavone-7-O-methyltransfer | 0.983 | 1.0 | 0.513 | 1e-103 | |
| 147788173 | 354 | hypothetical protein VITISV_009881 [Viti | 0.983 | 1.0 | 0.511 | 1e-103 | |
| 359483934 | 358 | PREDICTED: isoflavone-7-O-methyltransfer | 0.991 | 0.997 | 0.520 | 1e-101 | |
| 225443574 | 358 | PREDICTED: isoflavone-7-O-methyltransfer | 0.991 | 0.997 | 0.515 | 1e-101 | |
| 255563164 | 355 | o-methyltransferase, putative [Ricinus c | 0.983 | 0.997 | 0.481 | 2e-98 |
| >gi|224077038|ref|XP_002305103.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222848067|gb|EEE85614.1| flavonoid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 258/350 (73%), Gaps = 5/350 (1%)
Query: 14 ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNL 73
ELF+ H + +FN++++MSL A +LGI DIIH+HGRPITL LVSAL I P KTS +
Sbjct: 12 ELFQAHTHLHSQMFNYINSMSLMCAAQLGIPDIIHNHGRPITLPHLVSALHIAPNKTSII 71
Query: 74 FRFMRLLVHMGLFSKTKVG---GEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENI 130
+R MR+LVH G F+ TK GE EEEAY LT S LL+KD + CLSP +S +++P +
Sbjct: 72 YRLMRMLVHSGFFATTKAANGQGEGEEEAYVLTPPSQLLVKDNTNCLSPFMS-LINPAFV 130
Query: 131 FPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCR 190
P + WF+GN+ + +E +G +W+Y NQNP L++ FN+AM DS+M +++DC +
Sbjct: 131 TPWLSLGDWFRGNEPTAFEHAYGMAFWEYHNQNPELNRLFNEAMACDSQMMNLVIRDC-K 189
Query: 191 KIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQY 250
IFEGL S+VDVGGG G S+IISEAFP + CTVL+LP + N+ T+NL Y+ GDMFQ+
Sbjct: 190 PIFEGLNSMVDVGGGTGSLSRIISEAFPHMNCTVLELPQVITNLEGTKNLNYVGGDMFQH 249
Query: 251 IPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEA 310
IP ADA KL+FH + DEDCLKILKKC+EAI+ + GKV+I+D+VI+EK+D+ ++TE
Sbjct: 250 IPSADAVLLKLIFHGWSDEDCLKILKKCKEAISSKEKGGKVIIVDVVIDEKKDEKELTET 309
Query: 311 KLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
KLL D LM V GKER+ +EW+ LFL+AGF+HYKIT +FGL+SLIEVYP
Sbjct: 310 KLLFDMLMMVVAAGKERSVKEWEKLFLEAGFSHYKITPLFGLRSLIEVYP 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116348|ref|XP_002331960.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222874737|gb|EEF11868.1| flavonoid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/349 (54%), Positives = 258/349 (73%), Gaps = 4/349 (1%)
Query: 14 ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNL 73
ELF+ + +FN+L++MSL A +LGI DIIH+HGRPITL ELVSAL I P K+S +
Sbjct: 26 ELFQAQTHLYGQMFNYLNSMSLVCAAQLGIPDIIHNHGRPITLPELVSALHIPPNKSSCI 85
Query: 74 FRFMRLLVHMGLFSKTK--VGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENIF 131
+R MR+LVH G F+ TK +G EAY LT S LL+KD + CLSP +S +++P +
Sbjct: 86 YRLMRMLVHSGFFATTKAVIGQGGGGEAYVLTPPSQLLVKDNTNCLSPFMS-LINPAFVT 144
Query: 132 PLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRK 191
P H + WF+G++ + ++ +G +W+Y NQNP L+ FN AM DS+M +++DC +
Sbjct: 145 PWHSLGDWFRGSEPTAFQQAYGMAFWEYNNQNPELNGLFNAAMACDSQMMNLVIRDC-KP 203
Query: 192 IFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYI 251
IFEGL S+VDVGGG G ++IISE FP + CTVL++P +AN+ TENLKY+ GDMFQ+I
Sbjct: 204 IFEGLDSMVDVGGGTGSLARIISETFPHMNCTVLEIPQVIANLEGTENLKYVGGDMFQHI 263
Query: 252 PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAK 311
P ADA KL+FH + DEDC+KILKKC+EAI+ + GKV+I+D+VINEK+D+H++TE K
Sbjct: 264 PSADAVLLKLIFHGWSDEDCVKILKKCKEAISSKEKGGKVIIVDVVINEKKDEHELTETK 323
Query: 312 LLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
LL D LM V GKER+ EEW+ LFL+AGF+HYKIT++FGL+SLIEVYP
Sbjct: 324 LLFDMLMMVVAAGKERSVEEWERLFLEAGFSHYKITSLFGLRSLIEVYP 372
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443568|ref|XP_002278092.1| PREDICTED: isoflavone-7-O-methyltransferase 9 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/365 (53%), Positives = 260/365 (71%), Gaps = 9/365 (2%)
Query: 1 MDTIENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELV 60
MD I EGG ELF+ + + +FN +++M+LK AVELGI DIIH+H PI+L +LV
Sbjct: 1 MDLIHGEGG---SELFQAQSHMYKHIFNFINSMALKCAVELGIPDIIHTHNHPISLPQLV 57
Query: 61 SALKIQPTKTSNLFRFMRLLVHMGLFSKTKV--GGEKEEEAYGLTAISALLI-KDKSYC- 116
SAL + PTKT + R MR+LVH G F+ KV E+E+E Y LT S LL+ KD +
Sbjct: 58 SALHLPPTKTRYVNRLMRVLVHSGFFATAKVHENQEEEDEGYVLTTSSRLLLSKDNNNVP 117
Query: 117 -LSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMI 175
LS V +LDP + P HF+ WF+GND++ ++T HGK++WDY + + FN+AM
Sbjct: 118 NLSAFVLAMLDPVLVTPWHFLGDWFRGNDLTAFDTAHGKSFWDYGSHDHKFFNLFNEAMA 177
Query: 176 SDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMP 235
SDS M ++KDC R +FEGLGS+VDVGGG G ++IISEAFP +KCTV DLPH V+N P
Sbjct: 178 SDSRMMSLVIKDC-RPVFEGLGSLVDVGGGKGLIARIISEAFPQLKCTVFDLPHVVSNFP 236
Query: 236 QTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295
+ NLKY+ GDMFQ +P ADA KLV H+ DE+C+KILKKCREAI + GKV+++D
Sbjct: 237 ECGNLKYVGGDMFQSVPTADAILLKLVLHSLSDEECVKILKKCREAIPSKEKGGKVIVID 296
Query: 296 IVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSL 355
IVINEK+++H +TEAKLL D LM V G+ER ++EW+ LFL+AGF+HYKI +FGL+SL
Sbjct: 297 IVINEKKEEHDITEAKLLFDLLMMTVVTGRERNEKEWEKLFLEAGFSHYKINPIFGLRSL 356
Query: 356 IEVYP 360
IEV+P
Sbjct: 357 IEVFP 361
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562994|ref|XP_002522501.1| o-methyltransferase, putative [Ricinus communis] gi|223538192|gb|EEF39801.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/363 (51%), Positives = 258/363 (71%), Gaps = 7/363 (1%)
Query: 1 MDTIENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELV 60
MD+ +++ EL + V +FN++++M LK AV+LGI DIIH HG+PITL ELV
Sbjct: 1 MDSTDSQ---KATELLQAQLHVYNHIFNYINSMCLKCAVQLGIPDIIHKHGKPITLPELV 57
Query: 61 SALKIQPTKTSNLFRFMRLLVHMGLFSKTKV--GGEKEEEAYGLTAISALLIKDKSYCLS 118
SAL I PTK + ++R MR+LVH G FS TK G E+ +E Y LT S LL+KD CL
Sbjct: 58 SALHIHPTKINFMYRLMRMLVHSGFFSITKAANGQEEGQEVYVLTPSSKLLVKDNPNCLK 117
Query: 119 PLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDS 178
P V +L P+ + P H + WF+GN+++V++ HG +W+Y +NP +Q FN+AM SDS
Sbjct: 118 PFVDSLLKPDFVTPGHVLGDWFRGNELTVFQRAHGMAFWEYNERNPEFNQLFNEAMASDS 177
Query: 179 EMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTE 238
M +++DC + IFEG+ S+VDVGGGNG ++IISEAFP +KCTVL+LP + N+ T+
Sbjct: 178 RMMNLVIRDC-KPIFEGVNSLVDVGGGNGSLARIISEAFPDMKCTVLELPQVIGNLEGTK 236
Query: 239 NLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERG-KVLIMDIV 297
NL Y+ GDMFQ+IP ADA KL+ H + DE+C+KILKKC+EAI+ G+ KV+++D+V
Sbjct: 237 NLNYVGGDMFQHIPSADAIILKLILHGWNDEECVKILKKCKEAISSTGKGSEKVIVIDLV 296
Query: 298 INEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIE 357
IN+K+D+++ TE KLL D LM GKERT++EW LFL AGF+H+KIT + GL+SLIE
Sbjct: 297 INDKKDEYEFTETKLLFDMLMMFVATGKERTEKEWGELFLKAGFSHFKITPILGLRSLIE 356
Query: 358 VYP 360
VYP
Sbjct: 357 VYP 359
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483947|ref|XP_003633042.1| PREDICTED: isoflavone-7-O-methyltransferase 9 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/365 (53%), Positives = 257/365 (70%), Gaps = 15/365 (4%)
Query: 1 MDTIENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELV 60
MD I EGG ELF+ + + +FN +++M+LK AVELGI DIIH+H PI+L +LV
Sbjct: 1 MDLIHGEGG---SELFQAQSHMYKHIFNFINSMALKCAVELGIPDIIHTHNHPISLPQLV 57
Query: 61 SALKIQPTKTSNLFRFMRLLVHMGLFSKTKV--GGEKEEEAYGLTAISALLI-KDKSYC- 116
SAL + PTKT + R MR+LVH G F+ KV E+E+E Y LT S LL+ KD +
Sbjct: 58 SALHLPPTKTRYVNRLMRVLVHSGFFATAKVHENQEEEDEGYVLTTSSRLLLSKDNNNVP 117
Query: 117 -LSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMI 175
LS V +LDP + P HF+ WF+GND++ ++T HGK++WDY + + FN+AM
Sbjct: 118 NLSAFVLAMLDPVLVTPWHFLGDWFRGNDLTAFDTAHGKSFWDYGSHDHKFFNLFNEAMA 177
Query: 176 SDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMP 235
SDS M ++KDC R +FEGLGS+VDVGGG G ++IISEAFP +KCTV DLPH V+N P
Sbjct: 178 SDSRMMSLVIKDC-RPVFEGLGSLVDVGGGKGLIARIISEAFPQLKCTVFDLPHVVSNFP 236
Query: 236 QTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295
+ NLKY+ GDMFQ +P ADA K GDE+C+KILKKCREAI + GKV+++D
Sbjct: 237 ECGNLKYVGGDMFQSVPTADAILLK------GDEECVKILKKCREAIPSKEKGGKVIVID 290
Query: 296 IVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSL 355
IVINEK+++H +TEAKLL D LM V G+ER ++EW+ LFL+AGF+HYKI +FGL+SL
Sbjct: 291 IVINEKKEEHDITEAKLLFDLLMMTVVTGRERNEKEWEKLFLEAGFSHYKINPIFGLRSL 350
Query: 356 IEVYP 360
IEV+P
Sbjct: 351 IEVFP 355
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443570|ref|XP_002278127.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/360 (51%), Positives = 251/360 (69%), Gaps = 6/360 (1%)
Query: 1 MDTIENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELV 60
MD I +G ELFE + + VF+ + +MSLK AV+LGI D IH+H +PITL EL
Sbjct: 1 MDHINGQGR---SELFEAQSFIYKHVFSFMDSMSLKCAVQLGIPDAIHNHNQPITLPELA 57
Query: 61 SALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPL 120
SA+++ P KTS L + MRLLVH G F+ KV ++ +E Y LT S LL+K + L+P+
Sbjct: 58 SAIQVPPEKTSRLHQLMRLLVHSGFFAMQKV--DENQEGYVLTPPSRLLVKGNATSLAPI 115
Query: 121 VSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEM 180
V G+LDP + P HF+ W +G+ ++ +E HG + W+Y NQNP + M +DS M
Sbjct: 116 VLGMLDPVLVTPWHFLGSWLQGSSLTAFEAAHGMDLWNYGNQNPEFFSLIGEIMATDSRM 175
Query: 181 AIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENL 240
+++C ++IFEGL S+VDVGGG G ++ I EAFP +KCTVLDLP VAN+P++ENL
Sbjct: 176 MSLAIREC-KEIFEGLSSLVDVGGGTGTMARGICEAFPHLKCTVLDLPQVVANLPKSENL 234
Query: 241 KYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300
Y+ GDMFQ IP ADA F K V H +GDEDC+KILK+CREAI + E GKV+I+D+V++
Sbjct: 235 DYVGGDMFQSIPSADAIFIKSVLHNWGDEDCVKILKRCREAIPSSAEGGKVIIIDLVLSN 294
Query: 301 KEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
K+D+H++ + KL D +M V V GKER +EEW+ LFL+AGF+HYKIT FG+ SLIEVYP
Sbjct: 295 KKDEHELAKTKLFNDMMMMVLVAGKERCEEEWEKLFLEAGFSHYKITPRFGVLSLIEVYP 354
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147788173|emb|CAN75970.1| hypothetical protein VITISV_009881 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/360 (51%), Positives = 250/360 (69%), Gaps = 6/360 (1%)
Query: 1 MDTIENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELV 60
MD I +G ELFE + + VF+ + +MSLK AV+LGI D IH+H +PITL EL
Sbjct: 1 MDRIHGQGR---SELFEAQSFIYKHVFSFMDSMSLKCAVQLGIPDAIHNHNQPITLPELA 57
Query: 61 SALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPL 120
SA+++ P KTS L + MRLLVH G F+ KV ++ +E Y LT S LL+K + L+P+
Sbjct: 58 SAIQVPPEKTSRLHQLMRLLVHSGFFAMQKV--DENQEGYVLTPPSRLLVKGNATSLAPI 115
Query: 121 VSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEM 180
V G+LDP + P HF+ W +G+ ++ +E HG + W+Y NQNP + M +DS M
Sbjct: 116 VLGMLDPVLVTPWHFLGSWLQGSSLTAFEAAHGMDLWNYGNQNPEXFSXIGEIMATDSRM 175
Query: 181 AIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENL 240
+++C ++IFEG S+VDVGGG G ++ I EAFP +KCTVLDLP VAN+P++ENL
Sbjct: 176 MSLAIREC-KEIFEGXSSLVDVGGGTGTMARGICEAFPHLKCTVLDLPQVVANLPKSENL 234
Query: 241 KYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300
Y+ GDMFQ IP ADA F K V H +GDEDC+KILK+CREAI + E GKV+I+D+V++
Sbjct: 235 DYVGGDMFQSIPSADAIFIKSVLHNWGDEDCVKILKRCREAIPSSAEGGKVIIIDLVLSN 294
Query: 301 KEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
K+D+H++ + KL D +M V V GKER +EEW+ LFL+AGF+HYKIT FG+ SLIEVYP
Sbjct: 295 KKDEHELAKTKLFNDMMMMVLVAGKERCEEEWEKLFLEAGFSHYKITPRFGVLSLIEVYP 354
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483934|ref|XP_003633039.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/361 (52%), Positives = 248/361 (68%), Gaps = 4/361 (1%)
Query: 1 MDTIENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELV 60
MD I EG ELF+ + + + + +++M+LK AV+LGI DIIH+H P TL +LV
Sbjct: 1 MDLIHGEGA---GELFQAQSHMYKHICSFMNSMALKCAVQLGIPDIIHNHAHPTTLPQLV 57
Query: 61 SALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYC-LSP 119
SAL I PTK S + R MRLLVH G F+ KV +EEE Y LT S LL KD LSP
Sbjct: 58 SALHIPPTKASCVHRLMRLLVHSGFFAIAKVHEHEEEEGYILTPSSRLLFKDNPTSNLSP 117
Query: 120 LVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSE 179
V +L P + P HF W +G+D++ +ET HG ++WD+ + NP + FN+ M SDS+
Sbjct: 118 FVLTVLHPALVTPWHFFGDWLRGDDLTAFETAHGVSFWDHGSHNPEIFNLFNEGMASDSQ 177
Query: 180 MAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTEN 239
M + + +FEGL S+VD+GGG G ++IISEAFP +KCTV DLPH VAN+P++ N
Sbjct: 178 MMSVVNFRELKPVFEGLSSLVDLGGGTGLLARIISEAFPQLKCTVFDLPHVVANLPESRN 237
Query: 240 LKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299
L+Y+ GDMFQ +P ADA K V H + DEDCLKILKKCREAI E GKV+I+D+VIN
Sbjct: 238 LEYVGGDMFQSVPSADAILLKCVLHDWSDEDCLKILKKCREAIRSEEEGGKVIIIDVVIN 297
Query: 300 EKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359
EK+D+ +TE KLL D +M V+G+ER ++EW+ LFL+AGF HYKIT +FGL+SLIEV+
Sbjct: 298 EKKDEDDITETKLLMDMMMMTLVNGRERNEKEWERLFLEAGFRHYKITPIFGLRSLIEVF 357
Query: 360 P 360
P
Sbjct: 358 P 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443574|ref|XP_002278208.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/361 (51%), Positives = 250/361 (69%), Gaps = 4/361 (1%)
Query: 1 MDTIENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELV 60
MD I EG ELF+ + + + + +++M+L+ AV+LGI DIIH+H P TL +LV
Sbjct: 1 MDLIHGEGA---GELFQAQSHMYKHICSFMNSMALRCAVQLGIPDIIHNHAHPTTLPQLV 57
Query: 61 SALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYC-LSP 119
SAL I PTK S + R MRLLVH G F+ KV +EEE Y LT S LL+KD LSP
Sbjct: 58 SALHIPPTKASCVHRLMRLLVHSGFFAMAKVHEHEEEEGYILTPSSRLLLKDNPTSNLSP 117
Query: 120 LVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSE 179
LV +L P + P HF W +G+D++ +ET HG ++WD+ + NP + FN+ M SDS+
Sbjct: 118 LVLTMLHPVLVTPWHFFGDWLRGDDLTAFETAHGVSFWDHGSHNPEIFNLFNEGMASDSQ 177
Query: 180 MAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTEN 239
M + + +FEGL S+VD+GGG G ++IISEAFP +KCTV DLPH VAN+P++ N
Sbjct: 178 MMSVVNFRELKPVFEGLSSLVDLGGGTGLLARIISEAFPQLKCTVFDLPHVVANLPESRN 237
Query: 240 LKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299
L+Y+ GDMFQ +P ADA K V H + DEDCLKILKKCREAI E GKV+I+D+VIN
Sbjct: 238 LEYVGGDMFQSVPSADAILLKCVLHDWSDEDCLKILKKCREAIRSEEEGGKVIIIDVVIN 297
Query: 300 EKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359
EK+D+ +TE KLL D +M V+G+ER ++EW+ LFL+AGF H+KI+ +FGL+SLIEV+
Sbjct: 298 EKKDEDDITETKLLMDMMMMTLVNGRERNEKEWEKLFLEAGFRHHKISPIFGLRSLIEVF 357
Query: 360 P 360
P
Sbjct: 358 P 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563164|ref|XP_002522586.1| o-methyltransferase, putative [Ricinus communis] gi|223538277|gb|EEF39886.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 174/361 (48%), Positives = 253/361 (70%), Gaps = 7/361 (1%)
Query: 1 MDTIENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELV 60
MD++++ +L + + +FN+L++M LK +V+LGI DII +HG+PITL ELV
Sbjct: 1 MDSVQSP---KATDLLQAQTHIYNHIFNNLNSMCLKCSVQLGIPDIIQNHGKPITLPELV 57
Query: 61 SALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPL 120
SAL I P KT+ L+R MR+LV+ G F T+ +EAY LT + LL+KD CLS
Sbjct: 58 SALNIHPGKTTCLYRLMRMLVYSGFFVTTET--PDGQEAYDLTPSTRLLVKDNPNCLSSF 115
Query: 121 VSGILDPENIFPLHFISKWFKGNDI-SVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSE 179
V +L P+ + H++ WFK N + +V++ HG +W+Y ++P +Q FN++M SDS
Sbjct: 116 VIALLWPDYVAAGHYLGDWFKNNKLDTVYDQAHGMEFWEYNERHPEYNQIFNESMASDSR 175
Query: 180 MAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTEN 239
M ++ DC + IFEGL S+VDVGGGNG ++IIS+ FP ++CTVLD V ++ ++N
Sbjct: 176 MMNLVIGDC-KPIFEGLNSVVDVGGGNGSLARIISQNFPHMQCTVLDRAQVVGSLEGSKN 234
Query: 240 LKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299
L Y+ GDMF+++P ADA KLV H + DE+C++ILK CREAIA G+ GKV+++DIV++
Sbjct: 235 LNYVPGDMFKHVPSADAAILKLVLHCWNDEECIRILKNCREAIASKGKGGKVIVIDIVVD 294
Query: 300 EKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359
EK+++ ++TE KLL D LM V V+G ERT++EWK LFL+AGF+HYKIT + G++SLIEVY
Sbjct: 295 EKKEQDELTETKLLFDILMMVVVNGTERTEKEWKRLFLEAGFSHYKITPLLGVRSLIEVY 354
Query: 360 P 360
P
Sbjct: 355 P 355
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | ||||||
| UNIPROTKB|Q84KK5 | 357 | D7OMT "Isoflavone 7-O-methyltr | 0.958 | 0.966 | 0.442 | 1.4e-80 | |
| UNIPROTKB|Q84KK4 | 365 | HI4'OMT "Isoflavone 4'-O-methy | 0.991 | 0.978 | 0.451 | 2e-79 | |
| UNIPROTKB|Q84KK6 | 367 | HI4'OMT "Isoflavone 4'-O-methy | 0.961 | 0.942 | 0.450 | 6.2e-78 | |
| UNIPROTKB|Q6VMW0 | 366 | OMT2 "8-hydroxyquercetin 8-O-m | 0.977 | 0.961 | 0.423 | 1.3e-75 | |
| UNIPROTKB|Q8GSN1 | 348 | Q8GSN1 "Myricetin O-methyltran | 0.911 | 0.942 | 0.388 | 1.1e-62 | |
| UNIPROTKB|B0EXJ8 | 355 | 16OMT "Tabersonine 16-O-methyl | 0.95 | 0.963 | 0.4 | 3.8e-62 | |
| UNIPROTKB|A8QW53 | 374 | OMT3 "5-pentadecatrienyl resor | 0.730 | 0.703 | 0.329 | 1.1e-41 | |
| TAIR|locus:2132806 | 382 | AT4G35160 [Arabidopsis thalian | 0.911 | 0.858 | 0.330 | 9.6e-41 | |
| TAIR|locus:2132801 | 325 | AT4G35150 [Arabidopsis thalian | 0.575 | 0.636 | 0.350 | 3.2e-39 | |
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.877 | 0.870 | 0.270 | 1e-29 |
| UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 154/348 (44%), Positives = 224/348 (64%)
Query: 14 ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNL 73
E+F+G + R ++ + +M LK VEL I +IIH+HG+PIT+SELVS LK+ TK N+
Sbjct: 12 EIFQGQALLYRHIYAFIDSMCLKWIVELDIPNIIHNHGKPITVSELVSILKVPQTKAGNV 71
Query: 74 FRFMRLLVHMGLFSKTKVGGEKEE-EAYGLTAISALLIKDKSYCLSPLVSGILDPENIFP 132
R MR + H G F + ++ E+EE EAY LTA S LL+K CL+P+V +LDP
Sbjct: 72 QRIMRYMAHNGFFERVRIQEEQEENEAYALTAASELLVKGSELCLAPMVECVLDPTLSGS 131
Query: 133 LHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKI 192
H + KW D++++ G ++W+++N+NP ++ FN AM SDS+M ++DC
Sbjct: 132 YHQLKKWIYEEDLTLFGVSLGSHFWEFLNENPEYNKSFNDAMASDSQMINLALRDC-NSG 190
Query: 193 FEXXXXXXXXXXXXXXFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIP 252
FE +KII + FP +KC V D P V N+ T NL Y+ GDMFQ +P
Sbjct: 191 FEGVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTNNLSYVGGDMFQSVP 250
Query: 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKL 312
ADA K + H + D DC +IL+KC+EA++ +GE+GKV+I+++VINE +D+H++T KL
Sbjct: 251 KADAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINENQDEHEITGTKL 310
Query: 313 LGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
L D M+ ++GKER++EEWK LF++AGF YKI+ + G SLIEVYP
Sbjct: 311 LMDVNMAC-LNGKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVYP 357
|
|
| UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)] | Back alignment and assigned GO terms |
|---|
Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
Identities = 166/368 (45%), Positives = 234/368 (63%)
Query: 1 MDTIENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELV 60
MD + G EL + + + V+N +S+M+LK A+ELGIAD+IHSHG+PITL EL
Sbjct: 1 MD-FSSSNGSEDTELSQAQIHLYKHVYNFVSSMALKSAMELGIADVIHSHGKPITLPELA 59
Query: 61 SALKIQPTKTSNLFRFMRLLVHMGLFSKTKVG---GEKEEEAYGLTAISALLIKDKSYCL 117
+AL ++P+K L RF+RLL H G F+KT V G +EE AYGLT S LL+K S CL
Sbjct: 60 TALNLRPSKIGVLHRFLRLLTHNGFFAKTTVSRGEGAEEETAYGLTPPSKLLVKSNSTCL 119
Query: 118 SPLVSGILDPENIFPLHFISKWF-KGND-ISVWETVHGKNYWDYMN---QNPGLSQRFNQ 172
+P+V G L P ++ KWF + N+ ++++E+ G+++W+++N ++ LS F +
Sbjct: 120 APIVKGALHPSSLDMWRSSKKWFLEDNEELTLFESATGESFWEFLNKETESDTLSM-FQE 178
Query: 173 AMISDSEMAIFIVKDCCRKIFEXXXXXXXXXXXXXXFSKIISEAFPGIKCTVLDLPHAVA 232
AM +DS M +K+C + +FE +K+I EAFP +KCTV D P VA
Sbjct: 179 AMAADSHMFKLALKEC-KHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVA 237
Query: 233 NMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVL 292
N+ ENL ++ GDMF+ +PPADA K V H + DE LKILK C+EAI+G G+ GKV+
Sbjct: 238 NLTGDENLNFVGGDMFKSVPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVI 297
Query: 293 IMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGL 352
I+DI I+E D ++TE KL D +M +GKER +EW+ L DAGF+ YKIT + G
Sbjct: 298 IIDISIDETSDDRELTELKLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSYKITPICGF 357
Query: 353 KSLIEVYP 360
KSLIEV+P
Sbjct: 358 KSLIEVFP 365
|
|
| UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
Identities = 161/357 (45%), Positives = 227/357 (63%)
Query: 14 ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNL 73
EL+ + + V+N +S+M+LK A+ELGIAD+IH+HG+PITL EL SALK+ P+K L
Sbjct: 12 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADVIHNHGKPITLPELASALKLHPSKVGIL 71
Query: 74 FRFMRLLVHMGLFSKTKV-------GGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILD 126
+RF+RLL H G F+KT V G E+EE AY LT S LL+K K CL+ +V G L
Sbjct: 72 YRFLRLLTHNGFFAKTTVPSQNGKDGEEEEETAYALTPPSKLLVKGKPTCLASIVRGALH 131
Query: 127 PENIFPLHFISKWFKGN-DISVWETVHGKNYWDYMNQNP--GLSQRFNQAMISDSEMAIF 183
P ++ KWFK + +++++E+ G+++WD++N++ G F +AM +DS+M
Sbjct: 132 PSSLDMWRSSEKWFKEDKELTLFESATGESFWDFLNKDSESGTLSMFQEAMAADSQMFKL 191
Query: 184 IVKDCCRKIFEXXXXXXXXXXXXXXFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYI 243
+K+C R +FE +K+I E FP +KCTV D P V N+ ENLK++
Sbjct: 192 ALKEC-RHVFEGLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQPQVVGNLSGNENLKFV 250
Query: 244 AGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKED 303
GDMF+ IPPADA K V H + DE LKILK +EAI+G G+ GKV+I+DI I+E
Sbjct: 251 GGDMFKSIPPADAVLLKWVLHDWNDELSLKILKNSKEAISGKGKEGKVIIIDISIDEASG 310
Query: 304 KHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
++TE +L D +M +GKER +EW+ L DAGF+ YKIT + G KSLIEV+P
Sbjct: 311 DRELTELQLDYDLVMLTMFNGKEREKKEWEKLISDAGFSSYKITPICGFKSLIEVFP 367
|
|
| UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 153/361 (42%), Positives = 226/361 (62%)
Query: 9 GISVR-ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQP 67
GIS + EL E V +++++++MSLK A++LGI D IH HG PITLS+L AL I
Sbjct: 6 GISSKQELLEAQAHVWNHIYSYINSMSLKCAIQLGIPDAIHKHGNPITLSQLADALNINK 65
Query: 68 TKTSNLFRFMRLLVHMGLFSKTKVG----GEKEEE---AYGLTAISALLIKDKSYCLSPL 120
K+ LFR MR+LVH G F K KV GE EEE AY LT S LL++ + ++P
Sbjct: 66 AKSHGLFRLMRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPF 125
Query: 121 VSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEM 180
+ DP H +S+WF+ + ++ ++T +G + +Y + L+ FN+AM D+
Sbjct: 126 ALAMSDPVYTETWHHLSEWFRNDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGF 185
Query: 181 AIFIVKDCCRKIFEXXXXXXXXXXXXXXFSKIISEAFPGIKCTVLDLPHAVANMPQTENL 240
I+ CR+IF+ +K I+ AFPG++CTVLDLP+ V + +ENL
Sbjct: 186 VNSILTTECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGSENL 245
Query: 241 KYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIA-GNGERGKVLIMDIVIN 299
+++GDMF +IP ADA F K + H + DE+C+KILKKC+EAI+ N K+++++IV+
Sbjct: 246 SFVSGDMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVME 305
Query: 300 EKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359
++++ H+ TE KL D M + GKER+++EW LF DAGFT+YKIT V GL+S+IEV+
Sbjct: 306 DEKETHEATETKLFFDMQMLAIITGKERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVF 365
Query: 360 P 360
P
Sbjct: 366 P 366
|
|
| UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 131/337 (38%), Positives = 203/337 (60%)
Query: 26 VFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGL 85
VF+ S SLK AV+LGI D IHSHG+P+ LS+L ++L I P+K ++R MR+LV G
Sbjct: 19 VFSFTSMSSLKCAVQLGIPDAIHSHGKPMALSDLTNSLPINPSKAPYIYRLMRILVAAGY 78
Query: 86 FSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDI 145
FS E+E+ Y LT + LL+K+ +V G+ + + +S+WF+ D+
Sbjct: 79 FS------EEEKNVYSLTPFTRLLLKNDPLNSISMVLGVNQIAELKAWNAMSEWFQNEDL 132
Query: 146 SVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEXXXXXXXXXXX 205
+ +ET HGKN+WD+ ++ + F+ M +DS + ++ +FE
Sbjct: 133 TAFETAHGKNFWDFGAEDK-YGKNFDGVMAADSILVSKMLIPEFNYLFEGLDSLVDVGGG 191
Query: 206 XXXFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHA 265
+K I+++FP +KCTV DLPH VAN+ TENL+++ GDMF+ IP A+A K + H
Sbjct: 192 TGTIAKAIAKSFPDLKCTVFDLPHVVANLESTENLEFVGGDMFEKIPSANAILLKWILHD 251
Query: 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVI--NEKEDKHQVTEAKLLGDTLMSVSVD 323
+ DE+C+K+LK CR+AI + GKV++++ V+ ++K + + +A++ D M V
Sbjct: 252 WKDEECVKVLKMCRKAIPEKEKGGKVILIETVLMDSKKHENEEAVKAQISSDIDMMVFFT 311
Query: 324 GKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
KERT+EEW TLF +AGF+ YKI + +S IEVYP
Sbjct: 312 AKERTEEEWATLFREAGFSGYKIFPMIDFRSPIEVYP 348
|
|
| UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 142/355 (40%), Positives = 213/355 (60%)
Query: 14 ELFEG-HGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSAL--KIQPTKT 70
E F G Q+ + +++ SLK AV+LGI D I +HG+PITLSEL +AL + P+K
Sbjct: 6 EEFRGAQAQIWSQSCSFITSASLKCAVKLGIPDTIDNHGKPITLSELTNALVPPVHPSKA 65
Query: 71 SNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENI 130
++R MR+L G S+ ++ GE E Y LT S +L+K + L +V + DP +
Sbjct: 66 PFIYRLMRVLAKNGFCSEEQLDGETEP-LYSLTPSSRILLKKEPLNLRGIVLTMADPVQL 124
Query: 131 FPLHFISKWFKGNDIS--VWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDC 188
+S W++ D S +ET HGKN+W Y +++ ++ FN+AM SDS++ ++
Sbjct: 125 KAWESLSDWYQNEDDSSTAFETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLLIGE 184
Query: 189 CRKIFEXXXXXXXXXXXXXXFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMF 248
+ +FE +K I++ FP +KCTV DLPH VAN+ EN++++AGDMF
Sbjct: 185 YKFLFEGLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLESKENVEFVAGDMF 244
Query: 249 QYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI-NEKEDKHQV 307
+ IP A+A F K + H + DEDC+KILK C++AI G GKV+I+D+V+ ++K+D H V
Sbjct: 245 EKIPSANAIFLKWILHDWNDEDCVKILKSCKKAIPAKG--GKVIIIDMVMYSDKKDDHLV 302
Query: 308 -TEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGL-KSLIEVYP 360
T+ + D M V+ KER ++EW LF +AGF+ YKI +SLIEVYP
Sbjct: 303 KTQTSM--DMAMLVNFAAKERCEKEWAFLFKEAGFSDYKIYPKLDFTRSLIEVYP 355
|
|
| UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)] | Back alignment and assigned GO terms |
|---|
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 91/276 (32%), Positives = 155/276 (56%)
Query: 97 EEAYGLTAISALLIKDKSYC---LSPLVSGILDPENIFPLHF-ISKWFKGND------IS 146
E Y LT S+LL+ +S LSP+++ +L P PL ++ WF+ ++ +
Sbjct: 100 EPVYKLTTASSLLVSSESSATASLSPMLNHVLSPFRDSPLSMGLTAWFRHDEDEQAPGMC 159
Query: 147 VWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEXXXXXXXXXXXX 206
+ ++G W+ ++ ++ FN AM +DS + I+ ++F
Sbjct: 160 PFTLMYGTTLWEVCRRDDAINALFNNAMAADSNFLMQILLKEFSEVFLGIDSLVDVAGGV 219
Query: 207 XXFSKIISEAFPGIKCTVLDLPHAVANMPQTE--NLKYIAGDMFQYIPPADAYFFKLVFH 264
+ I+ AFP +KCTVLDLPH VA P + N++++ GDMF+ IPPA+ K + H
Sbjct: 220 GGATMAIAAAFPCLKCTVLDLPHVVAKAPSSSIGNVQFVGGDMFESIPPANVVLLKWILH 279
Query: 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDG 324
+ +++C+KILK C++AI GK++I+D+V+ ++ E +++ D L + + G
Sbjct: 280 DWSNDECIKILKNCKQAIPSRDAGGKIIIIDVVVGSDSSDTKLLETQVIYD-LHLMKIGG 338
Query: 325 KERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
ER ++EWK +FL+AGF YKI + GL+S+IE+YP
Sbjct: 339 VERDEQEWKKIFLEAGFKDYKIMPILGLRSIIELYP 374
|
|
| TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 117/354 (33%), Positives = 175/354 (49%)
Query: 24 RLVFNHLSAMSLKGAVELGIADIIHSH--GRPITLSELVSALKIQPTKTSNLFRFMRLLV 81
+ VF + K A++L I + I +H +P+TL+EL SA+ P S+L R MR LV
Sbjct: 35 KYVFGFADIAAAKCAIDLKIPEAIENHPSSQPVTLAELSSAVSASP---SHLRRIMRFLV 91
Query: 82 HMGLFSK--TKVGGEKEEEAYGLTAISALLI--KDKSYCLSPLVSGILDPENIFP-LHF- 135
H G+F + TK G Y T +S L+ + L+P V PE + P L
Sbjct: 92 HQGIFKEIPTKDG---LATGYVNTPLSRRLMITRRDGKSLAPFVLFETTPEMLAPWLRLS 148
Query: 136 --ISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIF 193
+S G+ ++ VHGK+ W + NP LS N+AM D+ + V C +F
Sbjct: 149 SVVSSPVNGSTPPPFDAVHGKDVWSFAQDNPFLSDMINEAMACDARRVVPRVAGACHGLF 208
Query: 194 EXXXXXXXXXXXXXXFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIPP 253
+ ++ + FP IK DLPH + + ++ + GDMF IP
Sbjct: 209 DGVTTMVDVGGGTGETMGMLVKEFPWIKGFNFDLPHVIEVAEVLDGVENVEGDMFDSIPA 268
Query: 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK-------EDKHQ 306
DA F K V H +GD+DC+KILK C+EA+ N GKVLI++ VI E E +
Sbjct: 269 CDAIFIKWVLHDWGDKDCIKILKNCKEAVPPN--IGKVLIVESVIGENKKTMIVDERDEK 326
Query: 307 VTEAKLLGDTLMSVSVD-GKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359
+ +L+ D +M GKERT +EW + +AGF Y++ ++ ++SLI Y
Sbjct: 327 LEHVRLMLDMVMMAHTSTGKERTLKEWDFVLKEAGFARYEVRDIDDVQSLIIAY 380
|
|
| TAIR|locus:2132801 AT4G35150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 317 (116.6 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 76/217 (35%), Positives = 112/217 (51%)
Query: 151 VHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEXXXXXXXXXXXXXXFS 210
+HGK+ W + N SQ N+AM D+ + V C+ +F+
Sbjct: 109 LHGKDLWAFAQDNLCHSQLINEAMACDARRVVPRVAGACQGLFDGVATVVDVGGGTGETM 168
Query: 211 KIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDED 270
I+ + FP IK DLPH + + ++ + GDMF IP +DA K V H +GD+D
Sbjct: 169 GILVKEFPWIKGFNFDLPHVIEVAQVLDGVENVEGDMFDSIPASDAVIIKWVLHDWGDKD 228
Query: 271 CLKILKKCREAIAGNGERGKVLIMDIVINEK------EDKHQVTE-AKLLGDTLMSVSVD 323
C+KILK C+EA+ N GKVLI++ VI EK E++ E +L D +M V
Sbjct: 229 CIKILKNCKEAVLPN--IGKVLIVECVIGEKKNTMIAEERDDKLEHVRLQLDMVMMVHTS 286
Query: 324 -GKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359
GKERT +EW + +AGF Y++ + ++SLI Y
Sbjct: 287 TGKERTLKEWDFVLTEAGFARYEVRDFDDVQSLIIAY 323
|
|
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 91/336 (27%), Positives = 165/336 (49%)
Query: 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQ-PTKTSNLFRFMRLLVHMGLF--SKT 89
M+LK A+EL + +I+ +G P++ +E+ S L + P L R +RLL + S
Sbjct: 34 MALKSALELDLLEIMAKNGSPMSPTEIASKLPTKNPEAPVMLDRILRLLTSYSVLTCSNR 93
Query: 90 KVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISV-- 147
K+ G+ E YGL + L K++ +S +++ + + + W+ D +
Sbjct: 94 KLSGDGVERIYGLGPVCKYLTKNEDG-VSIAALCLMNQDKVL----MESWYHLKDAILDG 148
Query: 148 ---WETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEXXXXXXXXXX 204
+ +G + ++Y +P ++ FN M + S + + + + K FE
Sbjct: 149 GIPFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETY-KGFEGLTSLVDVGG 207
Query: 205 XXXXFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFH 264
K+I +P +K DLPH + + P ++++ GDMF +P DA F K + H
Sbjct: 208 GIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICH 267
Query: 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV-SVD 323
+ DE C+K LK C E++ E GKV++ + ++ E D T+ + D +M +
Sbjct: 268 DWSDEHCVKFLKNCYESLP---EDGKVILAECILPETPDSSLSTKQVVHVDCIMLAHNPG 324
Query: 324 GKERTDEEWKTLFLDAGFTHYKIT-NVFGLKSLIEV 358
GKERT++E++ L +GF K+ + FG+ +LIE+
Sbjct: 325 GKERTEKEFEALAKASGFKGIKVVCDAFGV-NLIEL 359
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 360 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 1e-68 | |
| pfam08100 | 50 | pfam08100, Dimerisation, Dimerisation domain | 7e-17 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 2e-13 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 6e-06 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 0.002 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 1e-68
Identities = 89/246 (36%), Positives = 135/246 (54%), Gaps = 9/246 (3%)
Query: 94 EKEEEAYGLTAISALLIKDKS-YCLSPLVSGILDPENIFPLHFISKWF-KGNDISVWETV 151
+ E YGLT S LL+K + L+PL+ DP + + +G E
Sbjct: 1 TRGGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPF--ERA 58
Query: 152 HGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSK 211
G +++Y+ +P ++ FN+AM + S + + + + F GL S+VDVGGG G +
Sbjct: 59 FGMPFFEYLGADPEFNRVFNRAMAAHSRLVMKKILET-AFDFSGLSSLVDVGGGTGALAA 117
Query: 212 IISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDC 271
I A+P IK V DLPH +A+ P + ++++ GD F+ +P ADA K V H + DEDC
Sbjct: 118 AIVRAYPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDC 177
Query: 272 LKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEE 331
+KILK+C EA+ GKV+++++V+ E D TE LL D M V GKERT++E
Sbjct: 178 VKILKRCYEAL---PPGGKVIVVEMVLPEDPDDDLETEV-LLLDLNMLVLNGGKERTEKE 233
Query: 332 WKTLFL 337
W+ L
Sbjct: 234 WRKLLS 239
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 7e-17
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 MSLKGAVELGIADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLV 81
M LK A+ELGI DII HG+P++ SEL S L + P L R +RLL
Sbjct: 1 MVLKCAIELGIPDIIAKHGKPLSPSELASKLPTVNPEAPVMLDRLLRLLA 50
|
This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 2e-13
Identities = 60/296 (20%), Positives = 115/296 (38%), Gaps = 73/296 (24%)
Query: 35 LKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGE 94
+K A+EL + + P L+ L + P + L + L M + +
Sbjct: 7 MKAAIELDLFSHMAE--GPKDLATLAADTGSVPPR---LEMLLETLRQMRVINL------ 55
Query: 95 KEEEAYGLTAIS----------------------ALLIKDKSYCLSPLVSGILDPENIFP 132
E+ + LT + A L D LS V G + + P
Sbjct: 56 -EDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQKNFKGQVP 114
Query: 133 LHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKI 192
+++ D +E +H N + Q ++ ++++
Sbjct: 115 YPPVTR----EDNLYFEEIHRSNA-----------KFAIQLLLEEAKLD----------- 148
Query: 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHA-------VANMPQTENLKYIAG 245
G+ ++DVGGG G S + + FP + T+L+LP A A + ++ IA
Sbjct: 149 --GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAV 206
Query: 246 DMFQY-IPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300
D+++ P ADA F + ++ ++ + KK +A+ G++LI+D+VI++
Sbjct: 207 DIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSG---GRLLILDMVIDD 259
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-06
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQT------ENLKYIAGDMFQ 249
++D+G G G + ++ FPG + T +DL P + + + ++ GD
Sbjct: 3 ARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPD 62
Query: 250 YIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNG 286
F VF G D L++L + G
Sbjct: 63 --ALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGG 97
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 199 IVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVAN-------MPQTENLKYIAGDMFQYI 251
++D+G G G + + + PG + T +D+ +N++ + GD +
Sbjct: 2 VLDLGCGTGALA-LALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60
Query: 252 PPADAYF----FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298
P AD F H ED + L++ R + G VL++ +V+
Sbjct: 61 PEADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGG----VLVLTLVL 106
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.76 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.76 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.75 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.74 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.74 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.73 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.72 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.7 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.7 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.65 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.65 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.64 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.64 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.64 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.63 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.63 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.63 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.62 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.62 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.62 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.61 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.61 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.61 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.59 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.59 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.58 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.58 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.57 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.57 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.57 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.55 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.53 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.53 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.53 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.52 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.51 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.5 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.5 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.49 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.49 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.49 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.48 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.48 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.48 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.47 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.47 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.46 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.46 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.45 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.45 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.44 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.43 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.43 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.42 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.39 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.37 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.37 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.36 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.36 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.36 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.36 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.34 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.34 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.34 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.34 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.3 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.3 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.28 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.25 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.25 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.24 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.23 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.23 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.23 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.22 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.18 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.18 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.17 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.17 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.15 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.15 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.14 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.14 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.13 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.12 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.12 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.1 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.1 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.1 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.08 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.08 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.07 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.06 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.06 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.05 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.04 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.04 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.04 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.0 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.98 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.97 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.97 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.97 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.97 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.96 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.93 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.93 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.93 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.92 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.92 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.9 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.86 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.85 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.85 | |
| PF08100 | 51 | Dimerisation: Dimerisation domain; InterPro: IPR01 | 98.85 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.84 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.81 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.8 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.8 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.8 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.8 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.79 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.76 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.76 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.69 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.69 | |
| PLN02366 | 308 | spermidine synthase | 98.69 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.68 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.66 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.66 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.66 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.65 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.65 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.64 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.64 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.61 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.59 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.57 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.57 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.56 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.54 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.53 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.51 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.5 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.5 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.49 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.47 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.46 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.41 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.38 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.37 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.36 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.36 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.36 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.34 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.33 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.33 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.33 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.31 | |
| PLN02476 | 278 | O-methyltransferase | 98.31 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.3 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.3 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.26 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.26 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.24 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.19 | |
| PLN02823 | 336 | spermine synthase | 98.17 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.16 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.16 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.13 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.13 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.11 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.1 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.07 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.05 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.05 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.05 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.04 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.03 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.02 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.0 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.98 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.98 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.98 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.96 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.92 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.89 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.89 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.89 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.87 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.86 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.84 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.84 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.75 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.74 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.72 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.65 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.63 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.59 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.55 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.5 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.47 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.46 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.44 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.37 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.36 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.31 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.31 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.31 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.28 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.27 | |
| PF09339 | 52 | HTH_IclR: IclR helix-turn-helix domain; InterPro: | 97.25 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.23 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.23 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.2 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.19 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.18 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.16 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.14 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.13 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.11 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.08 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.04 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.98 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.96 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.91 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.87 | |
| smart00346 | 91 | HTH_ICLR helix_turn_helix isocitrate lyase regulat | 96.81 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.78 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.72 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.71 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 96.7 | |
| PF12840 | 61 | HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ | 96.69 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.67 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.63 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.6 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.48 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.46 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.45 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.45 | |
| PF13463 | 68 | HTH_27: Winged helix DNA-binding domain; PDB: 3GFL | 96.45 | |
| PRK10141 | 117 | DNA-binding transcriptional repressor ArsR; Provis | 96.42 | |
| smart00550 | 68 | Zalpha Z-DNA-binding domain in adenosine deaminase | 96.4 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.31 | |
| PF01022 | 47 | HTH_5: Bacterial regulatory protein, arsR family; | 96.29 | |
| COG1414 | 246 | IclR Transcriptional regulator [Transcription] | 96.28 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.28 | |
| PRK11569 | 274 | transcriptional repressor IclR; Provisional | 96.25 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 96.16 | |
| PRK10163 | 271 | DNA-binding transcriptional repressor AllR; Provis | 96.13 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.11 | |
| TIGR02431 | 248 | pcaR_pcaU beta-ketoadipate pathway transcriptional | 96.06 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.05 | |
| PRK09834 | 263 | DNA-binding transcriptional activator MhpR; Provis | 96.0 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.0 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 95.99 | |
| PHA00738 | 108 | putative HTH transcription regulator | 95.92 | |
| PRK15090 | 257 | DNA-binding transcriptional regulator KdgR; Provis | 95.89 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.84 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.78 | |
| PF08461 | 66 | HTH_12: Ribonuclease R winged-helix domain; InterP | 95.78 | |
| PF14947 | 77 | HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_ | 95.74 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.74 | |
| PF01978 | 68 | TrmB: Sugar-specific transcriptional regulator Trm | 95.71 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.71 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.69 | |
| cd00092 | 67 | HTH_CRP helix_turn_helix, cAMP Regulatory protein | 95.61 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 95.56 | |
| TIGR02337 | 118 | HpaR homoprotocatechuate degradation operon regula | 95.55 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 95.55 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 95.55 | |
| PF13412 | 48 | HTH_24: Winged helix-turn-helix DNA-binding; PDB: | 95.48 | |
| PF13601 | 80 | HTH_34: Winged helix DNA-binding domain; PDB: 1UB9 | 95.46 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.44 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.39 | |
| PRK10857 | 164 | DNA-binding transcriptional regulator IscR; Provis | 95.27 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.25 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 95.13 | |
| smart00347 | 101 | HTH_MARR helix_turn_helix multiple antibiotic resi | 95.12 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.07 | |
| smart00419 | 48 | HTH_CRP helix_turn_helix, cAMP Regulatory protein. | 95.07 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.06 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 95.05 | |
| PRK11050 | 152 | manganese transport regulator MntR; Provisional | 95.05 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 94.98 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.85 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.75 | |
| PRK03902 | 142 | manganese transport transcriptional regulator; Pro | 94.72 | |
| COG3355 | 126 | Predicted transcriptional regulator [Transcription | 94.71 | |
| TIGR02010 | 135 | IscR iron-sulfur cluster assembly transcription fa | 94.67 | |
| PF09012 | 69 | FeoC: FeoC like transcriptional regulator; InterPr | 94.52 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 94.47 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.46 | |
| PF01638 | 90 | HxlR: HxlR-like helix-turn-helix; InterPro: IPR002 | 94.29 | |
| PRK11512 | 144 | DNA-binding transcriptional repressor MarR; Provis | 94.04 | |
| PF04967 | 53 | HTH_10: HTH DNA binding domain; InterPro: IPR00705 | 94.0 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.99 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 93.95 | |
| PF04703 | 62 | FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. | 93.84 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 93.82 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 93.8 | |
| TIGR02702 | 203 | SufR_cyano iron-sulfur cluster biosynthesis transc | 93.64 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 93.6 | |
| COG4742 | 260 | Predicted transcriptional regulator [Transcription | 93.6 | |
| COG1321 | 154 | TroR Mn-dependent transcriptional regulator [Trans | 93.59 | |
| COG1959 | 150 | Predicted transcriptional regulator [Transcription | 93.55 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 93.55 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 93.47 | |
| PF08220 | 57 | HTH_DeoR: DeoR-like helix-turn-helix domain; Inter | 93.45 | |
| TIGR00738 | 132 | rrf2_super rrf2 family protein (putative transcrip | 93.37 | |
| PF12802 | 62 | MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP | 93.28 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 93.26 | |
| PRK03573 | 144 | transcriptional regulator SlyA; Provisional | 93.07 | |
| TIGR00122 | 69 | birA_repr_reg BirA biotin operon repressor domain. | 93.0 | |
| TIGR01889 | 109 | Staph_reg_Sar staphylococcal accessory regulator f | 92.89 | |
| smart00418 | 66 | HTH_ARSR helix_turn_helix, Arsenical Resistance Op | 92.83 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 92.81 | |
| TIGR01884 | 203 | cas_HTH CRISPR locus-related DNA-binding protein. | 92.8 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 92.62 | |
| PF01047 | 59 | MarR: MarR family; InterPro: IPR000835 The MarR-ty | 92.58 | |
| smart00529 | 96 | HTH_DTXR Helix-turn-helix diphteria tox regulatory | 92.43 | |
| PRK11920 | 153 | rirA iron-responsive transcriptional regulator; Re | 92.32 | |
| PF01726 | 65 | LexA_DNA_bind: LexA DNA binding domain; InterPro: | 92.31 | |
| cd00090 | 78 | HTH_ARSR Arsenical Resistance Operon Repressor and | 92.27 | |
| PF08279 | 55 | HTH_11: HTH domain; InterPro: IPR013196 Winged hel | 92.09 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 92.07 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 92.06 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 92.02 | |
| TIGR02944 | 130 | suf_reg_Xantho FeS assembly SUF system regulator, | 91.95 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 91.93 | |
| cd07377 | 66 | WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi | 91.91 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 91.83 | |
| COG2345 | 218 | Predicted transcriptional regulator [Transcription | 91.56 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 91.45 | |
| COG1497 | 260 | Predicted transcriptional regulator [Transcription | 91.44 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 91.42 | |
| PRK11014 | 141 | transcriptional repressor NsrR; Provisional | 91.42 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 91.36 | |
| smart00420 | 53 | HTH_DEOR helix_turn_helix, Deoxyribose operon repr | 91.35 | |
| COG4189 | 308 | Predicted transcriptional regulator [Transcription | 91.28 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 91.17 | |
| COG4190 | 144 | Predicted transcriptional regulator [Transcription | 90.99 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 90.91 | |
| PRK10870 | 176 | transcriptional repressor MprA; Provisional | 90.6 | |
| PRK06266 | 178 | transcription initiation factor E subunit alpha; V | 90.58 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 90.53 | |
| PF07381 | 90 | DUF1495: Winged helix DNA-binding domain (DUF1495) | 90.5 | |
| COG1733 | 120 | Predicted transcriptional regulators [Transcriptio | 90.49 | |
| PRK14165 | 217 | winged helix-turn-helix domain-containing protein/ | 90.37 | |
| PRK06474 | 178 | hypothetical protein; Provisional | 90.37 | |
| smart00344 | 108 | HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto | 90.2 | |
| PF01325 | 60 | Fe_dep_repress: Iron dependent repressor, N-termin | 90.05 | |
| cd07153 | 116 | Fur_like Ferric uptake regulator(Fur) and related | 89.97 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 89.96 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 89.3 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 89.28 | |
| PRK15431 | 78 | ferrous iron transport protein FeoC; Provisional | 89.19 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 89.06 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 88.18 | |
| PF14394 | 171 | DUF4423: Domain of unknown function (DUF4423) | 88.0 | |
| COG3432 | 95 | Predicted transcriptional regulator [Transcription | 87.92 | |
| PF03444 | 78 | HrcA_DNA-bdg: Winged helix-turn-helix transcriptio | 87.91 | |
| PRK13777 | 185 | transcriptional regulator Hpr; Provisional | 87.66 | |
| PF00325 | 32 | Crp: Bacterial regulatory proteins, crp family; In | 87.64 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 87.47 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 87.29 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 87.13 | |
| TIGR00373 | 158 | conserved hypothetical protein TIGR00373. This fam | 87.08 | |
| COG1846 | 126 | MarR Transcriptional regulators [Transcription] | 86.69 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 86.61 | |
| TIGR01610 | 95 | phage_O_Nterm phage replication protein O, N-termi | 86.28 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 86.06 | |
| PF02319 | 71 | E2F_TDP: E2F/DP family winged-helix DNA-binding do | 85.79 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 85.65 | |
| PF06163 | 127 | DUF977: Bacterial protein of unknown function (DUF | 85.29 | |
| PRK11179 | 153 | DNA-binding transcriptional regulator AsnC; Provis | 85.25 | |
| PF07789 | 155 | DUF1627: Protein of unknown function (DUF1627); In | 85.14 | |
| PRK11169 | 164 | leucine-responsive transcriptional regulator; Prov | 84.73 | |
| PF04182 | 75 | B-block_TFIIIC: B-block binding subunit of TFIIIC; | 84.41 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 84.36 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 84.32 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 84.22 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 83.65 | |
| PRK05638 | 442 | threonine synthase; Validated | 83.13 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 82.97 | |
| PF10007 | 92 | DUF2250: Uncharacterized protein conserved in arch | 82.81 | |
| PHA02943 | 165 | hypothetical protein; Provisional | 82.38 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 82.37 | |
| PF13545 | 76 | HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: | 82.04 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 81.99 | |
| COG5631 | 199 | Predicted transcription regulator, contains HTH do | 81.94 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 81.75 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 81.28 | |
| PRK04214 | 412 | rbn ribonuclease BN/unknown domain fusion protein; | 81.25 | |
| COG1522 | 154 | Lrp Transcriptional regulators [Transcription] | 81.21 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 80.94 | |
| COG1378 | 247 | Predicted transcriptional regulators [Transcriptio | 80.5 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 80.46 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 80.27 | |
| PF12793 | 115 | SgrR_N: Sugar transport-related sRNA regulator N-t | 80.15 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 80.12 |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=303.80 Aligned_cols=332 Identities=30% Similarity=0.435 Sum_probs=286.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcC--CCCCCcccHHHHHHHHHhCCceeccccCCC
Q 018116 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALK--IQPTKTSNLFRFMRLLVHMGLFSKTKVGGE 94 (360)
Q Consensus 17 ~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~--~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~ 94 (360)
+...+++++++++..+++|++|+|||+||.|+++ ++ ..|+|..+. .+|.++.++.|+||.|++.++++..-.
T Consensus 5 ~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~-~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~--- 78 (342)
T KOG3178|consen 5 EASLRAMRLANGFALPMVLKAACELGVFDILANA-GS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLV--- 78 (342)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhC-CC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeee---
Confidence 4567899999999999999999999999999974 23 888888777 566678999999999999999998752
Q ss_pred CcccceecchhhhhhhcC-CCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHH
Q 018116 95 KEEEAYGLTAISALLIKD-KSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQA 173 (360)
Q Consensus 95 ~~~~~y~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 173 (360)
+.. .|+++|.++++..+ +..++..++.........+.|..+.++++.+. .+|..++|...++|...+......++++
T Consensus 79 ~~~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~s 156 (342)
T KOG3178|consen 79 GGE-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGS 156 (342)
T ss_pred cce-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHH
Confidence 112 79999999966643 33578888877777788999999999999988 5888899988899999999888999999
Q ss_pred hhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCC-CCeEEEeCCCCCCCC
Q 018116 174 MISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQT-ENLKYIAGDMFQYIP 252 (360)
Q Consensus 174 m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~ri~~~~~D~~~~~p 252 (360)
|..........+++.+. .++.....||||+|.|..+..++..||+++.+.+|+|.+++.+... +.|+.+.+|++++.|
T Consensus 157 m~~l~~~~~~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P 235 (342)
T KOG3178|consen 157 MSFLSTLVMKKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTP 235 (342)
T ss_pred HHHHHHHHHHhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCC
Confidence 98887777666666665 3778899999999999999999999999999999999999998865 779999999999999
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhh-hhHhHhhhhhhhccc-CCcccCHH
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQV-TEAKLLGDTLMSVSV-DGKERTDE 330 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~-~~~~~~~d~~~~~~~-~g~~~t~~ 330 (360)
..|+|++.++||||+|++|+++|+|+++.|+| ||+|++.|.+.++....... ......+|+.|+... +|+.|+.+
T Consensus 236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~ 312 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLK 312 (342)
T ss_pred CcCeEEEEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHH
Confidence 99999999999999999999999999999999 99999999988863222111 223456788888775 69999999
Q ss_pred HHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 331 EWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
||..++.++||.+..+...+...++|+++|
T Consensus 313 e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 313 EFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HHHhcchhhcCceeEEEeccCccchheeCC
Confidence 999999999999999999999999999986
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=284.54 Aligned_cols=235 Identities=32% Similarity=0.634 Sum_probs=203.2
Q ss_pred ccceecchhhhhhhcCCC-CChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhh
Q 018116 97 EEAYGLTAISALLIKDKS-YCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMI 175 (360)
Q Consensus 97 ~~~y~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~ 175 (360)
+++|++|+.|+.|..+++ .++..++.+...+..+..|.+|.+++++|. ++|+..+|.++|+++.++++..+.|..+|.
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 589999999997776664 467777666556678899999999999998 789999999999999999999999999999
Q ss_pred hCcchhH-HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCCc
Q 018116 176 SDSEMAI-FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIPPA 254 (360)
Q Consensus 176 ~~~~~~~-~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~~p~~ 254 (360)
..+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.+|+++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~ 159 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVA 159 (241)
T ss_dssp HHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSE
T ss_pred hhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccc
Confidence 9887776 77778888 78889999999999999999999999999999999999999888999999999999888889
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCC--cEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGER--GKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~g--G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
|+|+++++||+|++++++++|++++++|+| | |+|+|+|.+.++....+........+|+.|++.++|+.||.+||
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~ 236 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEW 236 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHH
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHH
Confidence 999999999999999999999999999999 8 99999999999887765332223588999998888999999999
Q ss_pred HHHHH
Q 018116 333 KTLFL 337 (360)
Q Consensus 333 ~~ll~ 337 (360)
++||+
T Consensus 237 ~~ll~ 241 (241)
T PF00891_consen 237 EALLK 241 (241)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=287.69 Aligned_cols=289 Identities=20% Similarity=0.318 Sum_probs=210.8
Q ss_pred HHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 31 SAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 31 ~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
...+|++|+++||||+|.. +|.|++|||+++|+ +++.+.|||++|+++|++++. +++|++|+.+..+.
T Consensus 3 ~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~---~~~~~~~lL~~L~~lgll~~~-------~~~y~~t~~~~~~l 70 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLE-------DGKWSLTEFADYMF 70 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCC---ChHHHHHHHHHHHhCCCeEec-------CCcEecchhHHhhc
Confidence 4679999999999999986 79999999999999 569999999999999999987 48999999998554
Q ss_pred cC-CCC---ChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhh-hCcchhHHHH
Q 018116 111 KD-KSY---CLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMI-SDSEMAIFIV 185 (360)
Q Consensus 111 ~~-~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~~~~~~ 185 (360)
.+ ++. ++..++.+. .......|.+|++++|++ ++|...++ +....+.. ..|...|. .......+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~~--~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~l 141 (306)
T TIGR02716 71 SPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQ--KNFKGQVP-----YPPVTRED-NLYFEEIHRSNAKFAIQLL 141 (306)
T ss_pred cCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhcCC--cccccccC-----CCCCCHHH-HHhHHHHHHhcchhHHHHH
Confidence 44 321 112333322 111235688999999854 34432221 11111122 23333333 3333444556
Q ss_pred HHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCCccEE
Q 018116 186 KDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIPPADAY 257 (360)
Q Consensus 186 ~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i 257 (360)
++.++ +++..+|||||||+|.+++.+++++|+++++++|+|.+++.+++ .+|++++.+|+++ ++|++|+|
T Consensus 142 ~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v 219 (306)
T TIGR02716 142 LEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAV 219 (306)
T ss_pred HHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEE
Confidence 66666 77889999999999999999999999999999999888877653 5789999999987 67789999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHh-HhhhhhhhcccCCcccCHHHHHHHH
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAK-LLGDTLMSVSVDGKERTDEEWKTLF 336 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~-~~~d~~~~~~~~g~~~t~~e~~~ll 336 (360)
++++++|+|+++++.++|++++++|+| ||+++|.|.+.++..... +.... ......+.... ...++.++|.++|
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ll 294 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENPN-FDYLSHYILGAGMPFSV-LGFKEQARYKEIL 294 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCch-hhHHHHHHHHccccccc-ccCCCHHHHHHHH
Confidence 999999999999899999999999999 999999999876644321 11101 11111111111 1234689999999
Q ss_pred HHCCCceeEEE
Q 018116 337 LDAGFTHYKIT 347 (360)
Q Consensus 337 ~~aGf~~~~~~ 347 (360)
+++||+.+++.
T Consensus 295 ~~aGf~~v~~~ 305 (306)
T TIGR02716 295 ESLGYKDVTMV 305 (306)
T ss_pred HHcCCCeeEec
Confidence 99999987653
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=153.57 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=120.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIPPADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~~~~ 262 (360)
.+..+|||||||+|..+..+++.+ |+++++++|+ +.+++.+++ ..+++++.+|+.+ +.+.+|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 466799999999999999999874 7899999999 999988763 3579999999987 5668999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhh-----------------cc-cCC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMS-----------------VS-VDG 324 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-----------------~~-~~g 324 (360)
+||+++++..++|++++++|+| ||.+++.|.+......... ....+... .. ..-
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 203 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALENVM 203 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence 9999988888999999999999 9999999987755432210 01111000 00 012
Q ss_pred cccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEe
Q 018116 325 KERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
...|.+++.++++++||+.+++......+..+.++
T Consensus 204 ~~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 204 RTDSIETHKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred CCCCHHHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 34689999999999999977665544444444443
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-17 Score=141.79 Aligned_cols=159 Identities=18% Similarity=0.230 Sum_probs=121.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--PADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~~D~i~~~~~l 263 (360)
.++.+|||||||||.++..+++..+..+++++|+ +.|++.+++ ...++|+.+|+.. |+| +||+|.+++.|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 4689999999999999999999999999999999 999998875 1239999999988 887 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhh-hh-hhcc-c--CC-----------ccc
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGD-TL-MSVS-V--DG-----------KER 327 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d-~~-~~~~-~--~g-----------~~~ 327 (360)
++++|. .+.|++++|+|+| ||+++++|...+.......... ...+. +. .... . +. +..
T Consensus 130 rnv~d~--~~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~~~~~-~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 130 RNVTDI--DKALKEMYRVLKP---GGRLLVLEFSKPDNPVLRKAYI-LYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hcCCCH--HHHHHHHHHhhcC---CeEEEEEEcCCCCchhhHHHHH-HHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 999975 4779999999999 9999999998876543311100 01111 00 0000 0 11 234
Q ss_pred CHHHHHHHHHHCCCceeEEEeeCCce-eEEEE
Q 018116 328 TDEEWKTLFLDAGFTHYKITNVFGLK-SLIEV 358 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~~-~vi~~ 358 (360)
+.+++.+.++++||+.+....+.++. .+...
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g 235 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGIVALHRG 235 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeeeEEEEEE
Confidence 78999999999999999877775443 34343
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-17 Score=146.26 Aligned_cols=156 Identities=18% Similarity=0.270 Sum_probs=119.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--Cc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~ 254 (360)
..++..+. ..+..+|||||||+|..+..+++.+ +++++++|+ +.+++.+++ .+++.+..+|+.+ +++ .|
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 34555555 6788999999999999999998775 679999999 888877653 4689999999876 555 59
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..+++|++.++..++|++++++|+| ||++++.+.......... . ..... .. .......+.++|.+
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~---~--~~~~~-~~-~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWD---E--EFKAY-IK-KRKYTLIPIQEYGD 188 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcH---H--HHHHH-HH-hcCCCCCCHHHHHH
Confidence 999999999999876778999999999999 999999998765432211 0 01010 00 01123458999999
Q ss_pred HHHHCCCceeEEEeeCC
Q 018116 335 LFLDAGFTHYKITNVFG 351 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~~ 351 (360)
+++++||+.+++.++..
T Consensus 189 ~l~~aGF~~v~~~d~~~ 205 (263)
T PTZ00098 189 LIKSCNFQNVVAKDISD 205 (263)
T ss_pred HHHHCCCCeeeEEeCcH
Confidence 99999999999887643
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.8e-18 Score=149.72 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=114.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHH--CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEA--FPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIPPADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~~~~ 262 (360)
.+..+|||||||+|..+..+++. +|+.+++++|. +.+++.+++ ..+++++.+|+.+ +.+++|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 56789999999999999999884 58999999999 999988864 3489999999977 5667999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh------------hh-cccC-CcccC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL------------MS-VSVD-GKERT 328 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~------------~~-~~~~-g~~~t 328 (360)
+|++++++..+++++++++|+| ||.+++.|.+..+....... ......+.. +. ...+ -...+
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 9999988888999999999999 99999999876654432210 000111110 00 0000 12348
Q ss_pred HHHHHHHHHHCCCceeEEEe
Q 018116 329 DEEWKTLFLDAGFTHYKITN 348 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~ 348 (360)
.++..++|+++||+.++++.
T Consensus 211 ~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 211 VETHKARLHKAGFEHSELWF 230 (247)
T ss_pred HHHHHHHHHHcCchhHHHHH
Confidence 99999999999998765543
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=142.11 Aligned_cols=160 Identities=20% Similarity=0.233 Sum_probs=118.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCC--CccEEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQ-YIP--PADAYF 258 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~-~~p--~~D~i~ 258 (360)
..+..+|||||||+|.++..+++.+ |+.+++++|+ +.|++.+++ .++++++.+|+.+ +++ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999999875 5679999999 999987752 3479999999977 655 499999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh---hhcccC------------
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL---MSVSVD------------ 323 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~---~~~~~~------------ 323 (360)
+.+++|++++. .++|++++++|+| ||++++.|...++........ ....... .....+
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~l~~s~ 223 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSILDFNKSTQPFTTSMQ--EWMIDNVVVPVATGYGLAKEYEYLKSSI 223 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCc---CcEEEEEECCCCCcHHHHHHH--HHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence 99999999875 5789999999999 999999998866532211000 0000000 000000
Q ss_pred CcccCHHHHHHHHHHCCCceeEEEeeCCc-eeEEEEe
Q 018116 324 GKERTDEEWKTLFLDAGFTHYKITNVFGL-KSLIEVY 359 (360)
Q Consensus 324 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~ 359 (360)
....+.+++.++++++||+.++.....++ ..+..++
T Consensus 224 ~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 224 NEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 13459999999999999999998888654 4455543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=146.86 Aligned_cols=160 Identities=18% Similarity=0.253 Sum_probs=81.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~~D~i~~~~ 261 (360)
..++.+|||||||+|.++..++++. |+.+++++|+ +.|++.+++ ..+|+++++|+.+ |++ .||+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4567899999999999999999875 6789999999 999998874 3589999999987 666 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh--hc-ccCC-------------c
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM--SV-SVDG-------------K 325 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~~-~~~g-------------~ 325 (360)
.+|+++|. .+.|++++|+|+| ||+++|+|...+...... .....++...+ .. ...+ .
T Consensus 125 glrn~~d~--~~~l~E~~RVLkP---GG~l~ile~~~p~~~~~~--~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~ 197 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLKP---GGRLVILEFSKPRNPLLR--ALYKFYFKYILPLIGRLLSGDREAYRYLPESIRR 197 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEEE---EEEEEEEEEEB-SSHHHH--HHHHH-----------------------------
T ss_pred hHHhhCCH--HHHHHHHHHHcCC---CeEEEEeeccCCCCchhh--ceeeeeeccccccccccccccccccccccccccc
Confidence 99999985 4689999999999 999999999887753211 00001111000 00 0011 1
Q ss_pred ccCHHHHHHHHHHCCCceeEEEeeCCc-eeEEEEe
Q 018116 326 ERTDEEWKTLFLDAGFTHYKITNVFGL-KSLIEVY 359 (360)
Q Consensus 326 ~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~ 359 (360)
..+.+++.++++++||+.++..++.++ .++..++
T Consensus 198 f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~ 232 (233)
T PF01209_consen 198 FPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGT 232 (233)
T ss_dssp -----------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccC
Confidence 237899999999999999998888554 3344444
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=140.08 Aligned_cols=166 Identities=16% Similarity=0.197 Sum_probs=122.4
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--C
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--P 253 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~ 253 (360)
++..+. ..+..+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .
T Consensus 37 ~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 37 TMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 444444 5667899999999999999999886 6789999999 888876653 3589999999876 444 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhH-hhhhhh--------------
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKL-LGDTLM-------------- 318 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~-~~d~~~-------------- 318 (360)
||+|++..++|++++. .++|+++.++|+| ||++++.+...++.... ..... .+...+
T Consensus 115 fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~ 186 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDY--MQVLREMYRVVKP---GGKVVCLETSQPTIPGF---KQLYFFYFKYIMPLFGKLFAKSYKEY 186 (231)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHHcCc---CeEEEEEECCCCCChHH---HHHHHHHHcChhHHhhHHhcCCHHHH
Confidence 9999999999998875 4789999999999 99999988765443211 00000 000000
Q ss_pred --hcccCCcccCHHHHHHHHHHCCCceeEEEeeC-CceeEEEEeC
Q 018116 319 --SVSVDGKERTDEEWKTLFLDAGFTHYKITNVF-GLKSLIEVYP 360 (360)
Q Consensus 319 --~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 360 (360)
+........+.+++.++|+++||+++++.... +..++++++|
T Consensus 187 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 187 SWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 00001123578999999999999999998886 6677888876
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.7e-16 Score=143.32 Aligned_cols=151 Identities=17% Similarity=0.231 Sum_probs=111.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++|+.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999987 789999999 888876653 3689999999977 554 5999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch-hhh-hHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH-QVT-EAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~-~~~-~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
+||+++. .+++++++++|+| ||++++.+.......... ... ......+........-...+.++|.++++++|
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 9999875 5789999999999 999999887643321110 000 00011111000000112348999999999999
Q ss_pred CceeEEEeeC
Q 018116 341 FTHYKITNVF 350 (360)
Q Consensus 341 f~~~~~~~~~ 350 (360)
|..+++.++.
T Consensus 271 f~~v~~~d~s 280 (340)
T PLN02244 271 LQDIKTEDWS 280 (340)
T ss_pred CCeeEeeeCc
Confidence 9999988764
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7e-16 Score=138.34 Aligned_cols=155 Identities=18% Similarity=0.250 Sum_probs=110.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC--CCCccEEEe
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY--IPPADAYFF 259 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~--~p~~D~i~~ 259 (360)
..+++.++ ..+..+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .+++++.+|+.+. .+.||+|++
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 44566665 56779999999999999999999999999999999 999998874 4689999998652 236999999
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhH----hhhhh--hhcccCCcccCHHHHH
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKL----LGDTL--MSVSVDGKERTDEEWK 333 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~----~~d~~--~~~~~~g~~~t~~e~~ 333 (360)
+.++||+++. .+++++++++|+| ||++++........ .......... +.... +....+....+.+++.
T Consensus 96 ~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 169 (255)
T PRK14103 96 NAALQWVPEH--ADLLVRWVDELAP---GSWIAVQVPGNFDA-PSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYA 169 (255)
T ss_pred ehhhhhCCCH--HHHHHHHHHhCCC---CcEEEEEcCCCcCC-hhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHH
Confidence 9999999875 5789999999999 99988864321111 1100000000 00000 0000122345899999
Q ss_pred HHHHHCCCceeEE
Q 018116 334 TLFLDAGFTHYKI 346 (360)
Q Consensus 334 ~ll~~aGf~~~~~ 346 (360)
++|+++||.+...
T Consensus 170 ~~l~~aGf~v~~~ 182 (255)
T PRK14103 170 ELLTDAGCKVDAW 182 (255)
T ss_pred HHHHhCCCeEEEE
Confidence 9999999975443
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.3e-16 Score=119.64 Aligned_cols=98 Identities=21% Similarity=0.479 Sum_probs=83.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCC-CC-C-CCCccEEEecc-c
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDM-FQ-Y-IPPADAYFFKL-V 262 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~-~~-~-~p~~D~i~~~~-~ 262 (360)
++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+|++++.+|+ .. + .+.||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 367999999999999999999999999999999 989887663 68999999999 33 2 33699999999 6
Q ss_pred cccCCh-hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 263 FHAFGD-EDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 263 lh~~~~-~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+|++.. ++..++|+++++.|+| ||+++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 665543 5778999999999999 89888865
|
... |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=127.91 Aligned_cols=166 Identities=17% Similarity=0.202 Sum_probs=120.9
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP-- 252 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p-- 252 (360)
++..+. ..+..+|||||||+|.++..+++.+| ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+
T Consensus 43 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 43 TIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 344444 34568999999999999999999987 789999999 888776653 3578999999876 332
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh-----hcccC----
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM-----SVSVD---- 323 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~---- 323 (360)
.||+|++.+++|++++. ..+|+++.++|+| ||.+++.+...+...... .....+...+ ....+
T Consensus 121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 192 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDI--DKALREMYRVLKP---GGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGKLISKNAEA 192 (239)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHhccC---CcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHHHHcCCcHH
Confidence 59999999999998874 5789999999999 999999988765432110 0000000000 00000
Q ss_pred --------CcccCHHHHHHHHHHCCCceeEEEeeC-CceeEEEEeC
Q 018116 324 --------GKERTDEEWKTLFLDAGFTHYKITNVF-GLKSLIEVYP 360 (360)
Q Consensus 324 --------g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 360 (360)
...++.++|.++|+++||+.+++.... +...++.++|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 193 YSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123478899999999999999999874 5667887765
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-15 Score=137.06 Aligned_cols=141 Identities=26% Similarity=0.317 Sum_probs=110.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CccEEEeccccccC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAF 266 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~ 266 (360)
.+..+|||||||+|.++..+++.++..+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3567999999999999999999988889999999 888887764 4678999999876 444 49999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEE
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKI 346 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
++.+ ++|++++++|+| ||++++.+...+... ......+..+ ...+.+++.++|+++||+.+++
T Consensus 192 ~d~~--~~L~e~~rvLkP---GG~LvIi~~~~p~~~------~~r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLKI---GGKACLIGPVHPTFW------LSRFFADVWM------LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCHH--HHHHHHHHhcCC---CcEEEEEEecCcchh------HHHHhhhhhc------cCCCHHHHHHHHHHCCCeEEEE
Confidence 9864 689999999999 999998876543210 0001112111 1348899999999999999998
Q ss_pred EeeCC
Q 018116 347 TNVFG 351 (360)
Q Consensus 347 ~~~~~ 351 (360)
..+..
T Consensus 255 ~~i~~ 259 (340)
T PLN02490 255 KRIGP 259 (340)
T ss_pred EEcCh
Confidence 87643
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-15 Score=144.99 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=116.1
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--Cc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP--PA 254 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p--~~ 254 (360)
.+++.+. ..+..+|||||||+|..+..+++.+ +++++++|+ +.+++.+++ ..+++|..+|+.. ++| .|
T Consensus 257 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 257 EFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 3445554 4667899999999999999999876 789999999 888887653 4589999999987 454 49
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..+++|+++. .++|++++++|+| ||++++.+.......... ..... .. ..+...++..++.+
T Consensus 334 D~I~s~~~l~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~---~~--~~g~~~~~~~~~~~ 400 (475)
T PLN02336 334 DVIYSRDTILHIQDK--PALFRSFFKWLKP---GGKVLISDYCRSPGTPSP---EFAEY---IK--QRGYDLHDVQAYGQ 400 (475)
T ss_pred EEEEECCcccccCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCCcH---HHHHH---HH--hcCCCCCCHHHHHH
Confidence 999999999999875 4789999999999 999999998765433221 11111 10 12345678999999
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
+++++||.++.+...
T Consensus 401 ~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 401 MLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHCCCeeeeeecc
Confidence 999999999877654
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-15 Score=136.63 Aligned_cols=152 Identities=18% Similarity=0.131 Sum_probs=109.2
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCC-CCC-Cc
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP-------QTENLKYIAGDMFQ-YIP-PA 254 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~ri~~~~~D~~~-~~p-~~ 254 (360)
++..++ ...+.+|||||||+|.++..++...+. +++++|. +.++..++ ...+++++.+|+.+ +.+ .|
T Consensus 114 l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 114 VLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 344444 335689999999999999999998654 5999998 65554321 14589999999876 444 59
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..++||..+. ..+|+++++.|+| ||.+++.+.+.+...... ......+.. +.. .-..++.+++..
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~-l~p~~~y~~--~~~--~~~lps~~~l~~ 260 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVP---GGELVLETLVIDGDENTV-LVPGDRYAK--MRN--VYFIPSVPALKN 260 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcCC---CcEEEEEEEEecCCCccc-cCchhHHhc--Ccc--ceeCCCHHHHHH
Confidence 999999999998875 4789999999999 999988776665443221 000011111 110 012458999999
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
+++++||+.+++...
T Consensus 261 ~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 261 WLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHcCCceEEEEeC
Confidence 999999999988765
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=135.52 Aligned_cols=158 Identities=15% Similarity=0.174 Sum_probs=110.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~ 254 (360)
+.++++++ ++++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|..+-.+.|
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 45666676 8899999999999999999999998 899999999 776665542 578999999986633489
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhh-hhhcccCCcccCHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDT-LMSVSVDGKERTDEEWK 333 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~~~~g~~~t~~e~~ 333 (360)
|.|++..++.|+..+....+++++.++|+| ||++++............ ......++ ......+|...+.+++.
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~---~~~~~~~~i~kyiFPgg~lps~~~~~ 202 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHA---ERRSSSDFIRKYIFPGGYLPSLSEIL 202 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHH---CTTCCCHHHHHHTSTTS---BHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchh---hcCCCceEEEEeeCCCCCCCCHHHHH
Confidence 999999999999988889999999999999 999988777765532211 00000011 12223467788999999
Q ss_pred HHHHHCCCceeEEEee
Q 018116 334 TLFLDAGFTHYKITNV 349 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~ 349 (360)
..++++||++..+...
T Consensus 203 ~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 203 RAAEDAGLEVEDVENL 218 (273)
T ss_dssp HHHHHTT-EEEEEEE-
T ss_pred HHHhcCCEEEEEEEEc
Confidence 9999999999888765
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-15 Score=130.32 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=107.5
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEeccccccC
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVFHAF 266 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~~ 266 (360)
++|||||||+|.++..+++.+|+++++++|+ +.+++.+++ .++++++..|+.. +.+ .||+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999999999999999 888776653 4689999999865 444 59999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEE
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKI 346 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
++. ..+|++++++|+| ||++++.+...+...... . + .......+..+|.++++++||++++.
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~------~--~-----~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLADFIANLLSAIE------H--E-----ETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEEEcccccCcccc------c--c-----ccccccCCHHHHHHHHHHCCCeEEEe
Confidence 774 5889999999999 999999887543211100 0 0 00112458899999999999999988
Q ss_pred Eee
Q 018116 347 TNV 349 (360)
Q Consensus 347 ~~~ 349 (360)
..+
T Consensus 143 ~~~ 145 (224)
T smart00828 143 VDA 145 (224)
T ss_pred EEC
Confidence 776
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=126.69 Aligned_cols=160 Identities=15% Similarity=0.142 Sum_probs=118.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~D~i~~~~~l 263 (360)
..+..+|||+|||+|.++..+++.+|. .+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 346789999999999999999999986 79999999 787776653 3579999999877 333 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccC-----------------Ccc
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVD-----------------GKE 326 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----------------g~~ 326 (360)
|+.++. ..+|+++++.|+| ||++++.+...+...... .....+...+....+ ...
T Consensus 117 ~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (223)
T TIGR01934 117 RNVTDI--QKALREMYRVLKP---GGRLVILEFSKPANALLK---KFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAF 188 (223)
T ss_pred CCcccH--HHHHHHHHHHcCC---CcEEEEEEecCCCchhhH---HHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhC
Confidence 988764 5789999999999 999999988655432110 000000000000000 123
Q ss_pred cCHHHHHHHHHHCCCceeEEEeeCCc-eeEEEEeC
Q 018116 327 RTDEEWKTLFLDAGFTHYKITNVFGL-KSLIEVYP 360 (360)
Q Consensus 327 ~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~~ 360 (360)
.+..+|.++|+++||+.+++.++.+. ..+++++|
T Consensus 189 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 189 PSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred CCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 47889999999999999999999766 45667664
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.1e-15 Score=125.77 Aligned_cols=140 Identities=18% Similarity=0.202 Sum_probs=106.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-C
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP-P 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p-~ 253 (360)
+.+++.+. ..+..+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ ..++++...|+.+ +++ .
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 44455555 445689999999999999999986 679999999 888887653 2458889999876 444 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
||+|++..++|++++++...++++++++|+| ||++++++....+....+ . ..-...+.+++.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~~------~---------~~~~~~~~~el~ 157 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT------V---------GFPFAFKEGELR 157 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCCC------C---------CCCCccCHHHHH
Confidence 9999999999999988889999999999999 999877765544321110 0 001234788999
Q ss_pred HHHHHCCCceeEE
Q 018116 334 TLFLDAGFTHYKI 346 (360)
Q Consensus 334 ~ll~~aGf~~~~~ 346 (360)
++++ ||+++..
T Consensus 158 ~~~~--~~~~~~~ 168 (197)
T PRK11207 158 RYYE--GWEMVKY 168 (197)
T ss_pred HHhC--CCeEEEe
Confidence 9987 8987765
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.7e-15 Score=133.48 Aligned_cols=152 Identities=16% Similarity=0.094 Sum_probs=108.1
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCC-C-CCCc
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP-------QTENLKYIAGDMFQ-Y-IPPA 254 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~ri~~~~~D~~~-~-~p~~ 254 (360)
++..+. ...+.+|||||||+|.++..++...+. +++++|. +.++..+. ...++.+...++.+ + ...|
T Consensus 113 ~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 113 VLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 444444 345689999999999999999887553 7999998 66654321 24678888888765 3 2369
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..++||++++ ..+|++++++|+| ||.|++.+.+.+...... ........ .|.. .....+.+++..
T Consensus 190 D~V~s~gvL~H~~dp--~~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~-l~p~~ry~--k~~n--v~flpS~~~L~~ 259 (314)
T TIGR00452 190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVI---KGELVLETLVIDGDLNTV-LVPKDRYA--KMKN--VYFIPSVSALKN 259 (314)
T ss_pred CEEEEcchhhccCCH--HHHHHHHHHhcCC---CCEEEEEEEEecCccccc-cCchHHHH--hccc--cccCCCHHHHHH
Confidence 999999999999876 4689999999999 999999887665432110 00000110 1110 012358999999
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
+++++||+.+++...
T Consensus 260 ~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 260 WLEKVGFENFRILDV 274 (314)
T ss_pred HHHHCCCeEEEEEec
Confidence 999999999988765
|
Known examples to date are restricted to the proteobacteria. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=137.00 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=106.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~~l 263 (360)
++.+|||||||+|.++..+++ ++.+++++|. +.+++.++. ..+++++++|+.+ +.+ .||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 457999999999999998886 4789999999 899887763 2479999999865 333 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh-hcccC----CcccCHHHHHHHHHH
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM-SVSVD----GKERTDEEWKTLFLD 338 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~----g~~~t~~e~~~ll~~ 338 (360)
||++++. .+|++++++|+| ||.+++.+....... +........... +...+ .+..+.+++.+++++
T Consensus 209 eHv~d~~--~~L~~l~r~LkP---GG~liist~nr~~~~----~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~ 279 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP---NGATVLSTINRTMRA----YASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQR 279 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC---CcEEEEEECCcCHHH----HHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHH
Confidence 9999864 789999999999 999998875332110 000000000011 11111 245699999999999
Q ss_pred CCCceeEEEee
Q 018116 339 AGFTHYKITNV 349 (360)
Q Consensus 339 aGf~~~~~~~~ 349 (360)
+||+++++..+
T Consensus 280 aGf~i~~~~G~ 290 (322)
T PLN02396 280 ASVDVKEMAGF 290 (322)
T ss_pred cCCeEEEEeee
Confidence 99999988665
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.9e-15 Score=130.08 Aligned_cols=155 Identities=18% Similarity=0.235 Sum_probs=126.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~ 254 (360)
..+++++. +.++.+|||||||.|.+++..++++ +++++|+++ +++.+.+++ .+++++...|..+..+.|
T Consensus 62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 55677777 8999999999999999999999999 999999999 777776653 568999999987644459
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|-|++..+++|+..+.-..+++++++.|+| ||++++.....+...... ...+. .-....+|..++..++..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~~----~~~~i--~~yiFPgG~lPs~~~i~~ 209 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFRR----FPDFI--DKYIFPGGELPSISEILE 209 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCccccc----chHHH--HHhCCCCCcCCCHHHHHH
Confidence 999999999999998889999999999999 999999888877654310 01111 112235788889999999
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
..+++||.+......
T Consensus 210 ~~~~~~~~v~~~~~~ 224 (283)
T COG2230 210 LASEAGFVVLDVESL 224 (283)
T ss_pred HHHhcCcEEehHhhh
Confidence 999999998876554
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=130.77 Aligned_cols=145 Identities=18% Similarity=0.302 Sum_probs=111.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~~D~i~~~~ 261 (360)
..++.+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ .+++++..+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 5678899999999999888777764 5678999999 899888764 3689999999876 544 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
++|++++. .+++++++++|+| ||++++.+.......... ...+..++....+...+..+|.++|+++||
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKP---GGRFAISDVVLRGELPEE------IRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCC---CcEEEEEEeeccCCCCHH------HHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 99988765 4689999999999 999999998765432211 112222222223445688999999999999
Q ss_pred ceeEEEe
Q 018116 342 THYKITN 348 (360)
Q Consensus 342 ~~~~~~~ 348 (360)
..+++..
T Consensus 224 ~~v~i~~ 230 (272)
T PRK11873 224 VDITIQP 230 (272)
T ss_pred CceEEEe
Confidence 9887644
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-15 Score=123.25 Aligned_cols=135 Identities=18% Similarity=0.224 Sum_probs=97.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCCCccEEEeccccccCCh
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ---YIPPADAYFFKLVFHAFGD 268 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~---~~p~~D~i~~~~~lh~~~~ 268 (360)
..+..+|||||||+|.++..+.+. +.+++++|+ +.+++. ..+.....+... +...||+|++..+|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 467889999999999999999666 349999999 888877 223333332222 2236999999999999997
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc--cCCcccCHHHHHHHHHHCCCceeE
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS--VDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
...+|+++++.|+| ||.+++.++........ ....+.+... .....++.++|+++++++||++++
T Consensus 94 --~~~~l~~l~~~Lkp---gG~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 --PEEFLKELSRLLKP---GGYLVISDPNRDDPSPR-------SFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp --HHHHHHHHHHCEEE---EEEEEEEEEBTTSHHHH-------HHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred --HHHHHHHHHHhcCC---CCEEEEEEcCCcchhhh-------HHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 46889999999999 99999988876431110 1111111111 223567999999999999999875
|
... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.8e-15 Score=121.38 Aligned_cols=137 Identities=26% Similarity=0.367 Sum_probs=101.2
Q ss_pred CCCCEEEEeCCCCchHHHHHH-HHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--C-CCccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIIS-EAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--I-PPADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~-p~~D~i~~~~ 261 (360)
.+..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.++. .++++|..+|+.+ + + ..||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 356899999999999999999 4578999999999 999988874 4589999999988 4 3 3699999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhH--hhhhhhhcccCCcccCHHHHHHHHHHC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKL--LGDTLMSVSVDGKERTDEEWKTLFLDA 339 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~--~~d~~~~~~~~g~~~t~~e~~~ll~~a 339 (360)
++|++++.. .+|+++.++|++ ||.+++.+.......... ...... ...+.+. ..+. ..++|..+|++|
T Consensus 82 ~l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~a 151 (152)
T PF13847_consen 82 VLHHFPDPE--KVLKNIIRLLKP---GGILIISDPNHNDELPEQ-LEELMNLYSEVWSMI--YIGN--DKEEWKYILEEA 151 (152)
T ss_dssp TGGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEEHSHHHHHH-HHHHHHHHHHHHHHC--C-----CCCGHHHHHHHT
T ss_pred chhhccCHH--HHHHHHHHHcCC---CcEEEEEECChHHHHHHH-HHHHHHHHHHHhhhh--hccc--CHHHHHHHHHhc
Confidence 999999864 779999999999 899999888732211110 101001 1111111 1112 778999999999
Q ss_pred C
Q 018116 340 G 340 (360)
Q Consensus 340 G 340 (360)
|
T Consensus 152 g 152 (152)
T PF13847_consen 152 G 152 (152)
T ss_dssp T
T ss_pred C
Confidence 8
|
... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-14 Score=124.42 Aligned_cols=183 Identities=14% Similarity=0.086 Sum_probs=117.7
Q ss_pred hhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcC
Q 018116 156 YWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANM 234 (360)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a 234 (360)
.|+.++.++.....+...|..........+++.+.....+..+|||||||+|.++..+++. +.+++++|+ +.+++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a 93 (219)
T TIGR02021 16 RWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMA 93 (219)
T ss_pred HHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 4555555444444444433322222223333333311235789999999999999999876 568999999 8998877
Q ss_pred CC-------CCCeEEEeCCCCCCCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhh
Q 018116 235 PQ-------TENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQV 307 (360)
Q Consensus 235 ~~-------~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~ 307 (360)
++ .+++.|..+|+.+....||+|++..+++|++.++..++++++.+.+++ ++ ++.+. +.....
T Consensus 94 ~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~---~~-~i~~~---~~~~~~--- 163 (219)
T TIGR02021 94 RNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE---RV-IFTFA---PKTAWL--- 163 (219)
T ss_pred HHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC---CE-EEEEC---CCchHH---
Confidence 64 248999999987644679999999999999888788899999998876 43 33321 111110
Q ss_pred hhHhHhhhhhhhcc---cCCcccCHHHHHHHHHHCCCceeEEEeeCC
Q 018116 308 TEAKLLGDTLMSVS---VDGKERTDEEWKTLFLDAGFTHYKITNVFG 351 (360)
Q Consensus 308 ~~~~~~~d~~~~~~---~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 351 (360)
.. .....-..... ..-..++.+++.++++++||+++.......
T Consensus 164 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 209 (219)
T TIGR02021 164 AF-LKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVST 209 (219)
T ss_pred HH-HHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccc
Confidence 00 00101000000 111245899999999999999998876644
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=130.51 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=107.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CCC--CccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--YIP--PADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~~p--~~D~i~~~~ 261 (360)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++++|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45679999999999999999987 679999999 899988764 3678999999865 222 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhh-----cccCCcccCHHHHHHHH
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMS-----VSVDGKERTDEEWKTLF 336 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~g~~~t~~e~~~ll 336 (360)
++||++++ .++|++++++|+| ||.+++........................+. ........+.+++.+++
T Consensus 121 vl~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l 195 (255)
T PRK11036 121 VLEWVADP--KSVLQTLWSVLRP---GGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWL 195 (255)
T ss_pred HHHhhCCH--HHHHHHHHHHcCC---CeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHH
Confidence 99999876 4789999999999 99998875443211000000000000000000 00012235789999999
Q ss_pred HHCCCceeEEEeeCCce
Q 018116 337 LDAGFTHYKITNVFGLK 353 (360)
Q Consensus 337 ~~aGf~~~~~~~~~~~~ 353 (360)
+++||+++....+....
T Consensus 196 ~~aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 196 EEAGWQIMGKTGVRVFH 212 (255)
T ss_pred HHCCCeEeeeeeEEEEe
Confidence 99999998877664433
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7e-14 Score=125.67 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=108.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCC--CCccEEE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQYI--PPADAYF 258 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~~--p~~D~i~ 258 (360)
..++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+.. ..||+|+
T Consensus 21 ~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 21 RDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 45566665 56788999999999999999999999999999999 999988875 567999999987632 3699999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhh------hh--hhcc--cCCcccC
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGD------TL--MSVS--VDGKERT 328 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d------~~--~~~~--~~g~~~t 328 (360)
++.++|++++. .++|++++++|+| ||.+++.- +.....+ ....... +. +... ......+
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~~---~~~~~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 167 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAP---GGVLAVQM---PDNLDEP---SHVLMREVAENGPWEQNLPDRGARRAPLPP 167 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCC---CcEEEEEC---CCCCCCH---HHHHHHHHHccCchHHHhccccccCcCCCC
Confidence 99999998875 5789999999999 89888752 1111111 0000000 00 0000 0123357
Q ss_pred HHHHHHHHHHCCCce
Q 018116 329 DEEWKTLFLDAGFTH 343 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~ 343 (360)
..++.+++.++|+.+
T Consensus 168 ~~~~~~~l~~~g~~v 182 (258)
T PRK01683 168 PHAYYDALAPAACRV 182 (258)
T ss_pred HHHHHHHHHhCCCce
Confidence 789999999999864
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.5e-14 Score=123.44 Aligned_cols=156 Identities=16% Similarity=0.187 Sum_probs=110.8
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--Cc
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP--PA 254 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p--~~ 254 (360)
+++.+. ..+..+|||+|||+|.++..+++.+ |..+++++|. +.+++.+++ ..++++...|+.. +++ .|
T Consensus 11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 344444 6678899999999999999999988 7889999999 887776643 4679999999876 443 59
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch-hhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH-QVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~-~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
|+|++.++++|+++. ..++++++++|+| ||.+++.+.......... ............. .......+..+|.
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 161 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILNFWS--DHFADPWLGRRLP 161 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHHHHH--hcCCCCcHHHHHH
Confidence 999999999999875 5689999999999 999999885432211000 0000001111111 1112334567899
Q ss_pred HHHHHCCCceeEEEee
Q 018116 334 TLFLDAGFTHYKITNV 349 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~ 349 (360)
++++++||..+++...
T Consensus 162 ~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 162 GLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHcCCCceeEEEE
Confidence 9999999997766443
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-14 Score=138.44 Aligned_cols=143 Identities=19% Similarity=0.292 Sum_probs=110.5
Q ss_pred CChhHHhhcCCcHHHHHHHHhhhCcchh--HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHH
Q 018116 154 KNYWDYMNQNPGLSQRFNQAMISDSEMA--IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHA 230 (360)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~--~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~ 230 (360)
..+|+++..+++...+|...|....... .......++ +.++.+|||||||+|.++..+++.+|+.+++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 4688999888888787776554432211 111222334 44678999999999999999999999999999999 888
Q ss_pred HhcCCC-----CCCeEEEeCCCCC-C--CC--CccEEEeccccccC-----------ChhHHHHHHHHHHHhccCCCCCc
Q 018116 231 VANMPQ-----TENLKYIAGDMFQ-Y--IP--PADAYFFKLVFHAF-----------GDEDCLKILKKCREAIAGNGERG 289 (360)
Q Consensus 231 ~~~a~~-----~~ri~~~~~D~~~-~--~p--~~D~i~~~~~lh~~-----------~~~~~~~~L~~~~~~L~p~~~gG 289 (360)
++.+++ ..+++++++|+.+ + ++ .||+|+++.++|+| ++++..++|++++++|+| ||
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GG 531 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GG 531 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---Cc
Confidence 887763 3568889999865 3 33 59999999999986 346778999999999999 99
Q ss_pred EEEEEeeecCCC
Q 018116 290 KVLIMDIVINEK 301 (360)
Q Consensus 290 ~lli~e~~~~~~ 301 (360)
++++.|.+.++.
T Consensus 532 rLII~D~v~~E~ 543 (677)
T PRK06922 532 RIIIRDGIMTED 543 (677)
T ss_pred EEEEEeCccCCc
Confidence 999999876643
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=117.42 Aligned_cols=146 Identities=23% Similarity=0.298 Sum_probs=109.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCC------CeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCC--Cc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPG------IKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQ-YIP--PA 254 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~-~~p--~~ 254 (360)
....++|||+||||..+..+++.-+. .+++++|+ |+|+..+++ ..++.++++|..+ |+| .|
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 34579999999999999999998776 78999999 999987653 4569999999988 787 49
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh---------------hh
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL---------------MS 319 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~---------------~~ 319 (360)
|.|++.+-+.++++.+ +.|++++|+||| ||++.+.|..--++.....+. ....++.. .+
T Consensus 179 D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cLeFskv~~~~l~~fy-~~ysf~VlpvlG~~iagd~~sYqYL 252 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCLEFSKVENEPLKWFY-DQYSFDVLPVLGEIIAGDRKSYQYL 252 (296)
T ss_pred eeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEEEccccccHHHHHHH-HhhhhhhhchhhHhhhhhHhhhhhH
Confidence 9999999999999864 779999999999 999999887654432211110 00111110 00
Q ss_pred cccCCcccCHHHHHHHHHHCCCceeE
Q 018116 320 VSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 320 ~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
+.-=-+..+.+++..+.+++||+.+.
T Consensus 253 veSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 253 VESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 00001344889999999999999887
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=118.63 Aligned_cols=140 Identities=19% Similarity=0.192 Sum_probs=103.4
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-Ccc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D 255 (360)
.+++.+. ..+..+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ .-++.+...|+.. +.+ .||
T Consensus 21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 4444444 445679999999999999999986 679999999 888887653 2247777788754 333 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTL 335 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~l 335 (360)
+|++..++|++++++...++++++++|+| ||++++++....+..... .. .....+.+++.++
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~~--------~~-------~~~~~~~~el~~~ 158 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPCH--------MP-------FSFTFKEDELRQY 158 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCCC--------CC-------cCccCCHHHHHHH
Confidence 99999999999888888999999999999 999888776543321110 00 0123588999998
Q ss_pred HHHCCCceeEEE
Q 018116 336 FLDAGFTHYKIT 347 (360)
Q Consensus 336 l~~aGf~~~~~~ 347 (360)
|+ +|+++...
T Consensus 159 f~--~~~~~~~~ 168 (195)
T TIGR00477 159 YA--DWELLKYN 168 (195)
T ss_pred hC--CCeEEEee
Confidence 86 58777665
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=116.10 Aligned_cols=157 Identities=13% Similarity=0.098 Sum_probs=119.8
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC----C--CCCe-EEEeCCCCCC---CC--------CccEEE
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP----Q--TENL-KYIAGDMFQY---IP--------PADAYF 258 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~--~~ri-~~~~~D~~~~---~p--------~~D~i~ 258 (360)
+|||||+|||..+..+++.+|++...-.|. +.....+. + .+++ .-+..|+.++ ++ .||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999999999999988888 44432222 1 1222 2234455442 21 599999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhccc-CCcccCHHHHHHHHH
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV-DGKERTDEEWKTLFL 337 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~~~t~~e~~~ll~ 337 (360)
+.+++|-.+-+.+..+++.+.++|+| ||.|++.-++..+..... +....+|....... ....|..+++.++.+
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~ 181 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIEDVEALAA 181 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHHHHHHHH
Confidence 99999999999999999999999999 999999998877653321 23345665554432 345789999999999
Q ss_pred HCCCceeEEEeeCCceeEEEEeC
Q 018116 338 DAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 338 ~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
++||+..+.+.+|-+.-+++++|
T Consensus 182 ~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 182 AHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HCCCccCcccccCCCCeEEEEeC
Confidence 99999999999988877777765
|
The function of this family is unknown. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-13 Score=120.37 Aligned_cols=147 Identities=16% Similarity=0.121 Sum_probs=101.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CC-C-CccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEA----FPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YI-P-PADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~-p-~~D~i~~~~~ 262 (360)
.+..+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++ ..++++...+... +. + .||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 46689999999999999888764 35679999999 999988765 3456676665433 22 2 5999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh---hcccC-----CcccCHHHHHH
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM---SVSVD-----GKERTDEEWKT 334 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~---~~~~~-----g~~~t~~e~~~ 334 (360)
+||+++++..++|++++++++ |.+++.+...+..... .......... ..... -+.++.+++.+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ 209 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLAYA----LFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAA 209 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHHHH----HHHHHHHHhccCceeeccchHHHHhhcCHHHHHH
Confidence 999999888899999999875 5666766655421100 0000000000 00011 13569999999
Q ss_pred HHHHCCCceeEEEeeC
Q 018116 335 LFLDAGFTHYKITNVF 350 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~ 350 (360)
++++ ||++...++..
T Consensus 210 ll~~-Gf~~~~~~~~~ 224 (232)
T PRK06202 210 LAPQ-GWRVERQWPFR 224 (232)
T ss_pred HhhC-CCeEEecccee
Confidence 9999 99988776653
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.7e-14 Score=115.75 Aligned_cols=168 Identities=15% Similarity=0.190 Sum_probs=121.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCC--CccEEE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQYIP--PADAYF 258 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~~p--~~D~i~ 258 (360)
..++...+ .....+|+|+|||+|.....|++++|...++|+|. +.|++.|+. ..+++|..+|+.+-.| ..|+++
T Consensus 20 ~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 20 RDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 45667777 77889999999999999999999999999999999 999999875 7899999999987444 799999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhh---hHhH--hhhhhhhc--ccCCcccCHHH
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVT---EAKL--LGDTLMSV--SVDGKERTDEE 331 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~---~~~~--~~d~~~~~--~~~g~~~t~~e 331 (360)
++-+||.++|. .++|.++...|.| ||.|-+-=+ ++...+... +... -+.-.+.. .......+...
T Consensus 98 aNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQmP---dN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~ 169 (257)
T COG4106 98 ANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQMP---DNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAA 169 (257)
T ss_pred hhhhhhhcccc--HHHHHHHHHhhCC---CceEEEECC---CccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHH
Confidence 99999999986 5789999999999 898877432 222221110 0000 01111110 01223458999
Q ss_pred HHHHHHHCCCceeEE-----EeeCCceeEEEEeC
Q 018116 332 WKTLFLDAGFTHYKI-----TNVFGLKSLIEVYP 360 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~-----~~~~~~~~vi~~~~ 360 (360)
|.++|...+-++.-. +++++...++++.|
T Consensus 170 Yy~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 170 YYELLAPLACRVDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HHHHhCcccceeeeeeeeccccCCCccchhhhee
Confidence 999999887654332 33356666776654
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-14 Score=106.81 Aligned_cols=88 Identities=23% Similarity=0.425 Sum_probs=75.3
Q ss_pred EEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CccEEEeccccccCChhHHH
Q 018116 200 VDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDEDCL 272 (360)
Q Consensus 200 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~~~ 272 (360)
||+|||+|..+..+++. +..+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++.+++||++ +..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--DPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--HHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--CHH
Confidence 79999999999999998 8999999999 888887764 5677899999887 655 499999999999994 457
Q ss_pred HHHHHHHHhccCCCCCcEEEE
Q 018116 273 KILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 273 ~~L~~~~~~L~p~~~gG~lli 293 (360)
+++++++|+|+| ||+++|
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 899999999999 898875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=5e-13 Score=119.97 Aligned_cols=99 Identities=19% Similarity=0.325 Sum_probs=83.1
Q ss_pred CCCCEEEEeCCCCch----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCCC--------------------------
Q 018116 194 EGLGSIVDVGGGNGG----FSKIISEAFP-----GIKCTVLDL-PHAVANMPQT-------------------------- 237 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~-------------------------- 237 (360)
.+..+|+|+|||+|. +++.+++.++ +.+++++|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 5666666654 578999999 9999887751
Q ss_pred -------CCeEEEeCCCCCC-CC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 238 -------ENLKYIAGDMFQY-IP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 238 -------~ri~~~~~D~~~~-~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+|+|..+|+.++ .+ .||+|++.+++||+++++..+++++++++|+| ||.|++-.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 3799999999883 32 59999999999999998888999999999999 99988844
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.3e-15 Score=111.66 Aligned_cols=87 Identities=23% Similarity=0.447 Sum_probs=59.0
Q ss_pred EEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC---CeEEEeCCCCCCC-C-CccEEEeccccccCC
Q 018116 200 VDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TE---NLKYIAGDMFQYI-P-PADAYFFKLVFHAFG 267 (360)
Q Consensus 200 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~---ri~~~~~D~~~~~-p-~~D~i~~~~~lh~~~ 267 (360)
||||||+|.++..+++.+|..+++++|+ +.+++.+++ .. ++++...|..... + .||+|++.+++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 999988775 12 3444444544432 2 699999999999994
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEE
Q 018116 268 DEDCLKILKKCREAIAGNGERGKV 291 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~l 291 (360)
+ ...+|+++++.|+| ||.|
T Consensus 81 ~--~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TS---S-EE
T ss_pred h--HHHHHHHHHHHcCC---CCCC
Confidence 4 56899999999999 8875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=117.60 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=103.9
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CccEE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP--PADAY 257 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p--~~D~i 257 (360)
..+++.++ ..+..+|||+|||+|.++..+.+. +.+++++|+ +.+++.+++ ...+.++.+|+.. +++ .||+|
T Consensus 32 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 32 DALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 44455554 345689999999999999888764 679999999 999988875 3446788999876 544 59999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHH
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFL 337 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~ 337 (360)
+++.++|+.++. ..+|++++++|+| ||.+++.......... . ...+..+. .........+.++|.+++.
T Consensus 108 ~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~e---l--~~~~~~~~-~~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 108 WSNLAVQWCGNL--STALRELYRVVRP---GGVVAFTTLVQGSLPE---L--HQAWQAVD-ERPHANRFLPPDAIEQALN 176 (251)
T ss_pred EECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEeCCCCchHH---H--HHHHHHhc-cCCccccCCCHHHHHHHHH
Confidence 999999977764 5789999999999 9999987665432110 1 01111110 0011234568999999999
Q ss_pred HCCCce
Q 018116 338 DAGFTH 343 (360)
Q Consensus 338 ~aGf~~ 343 (360)
+.|+..
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 988863
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.3e-14 Score=120.25 Aligned_cols=145 Identities=17% Similarity=0.153 Sum_probs=106.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CC--CCccEEEeccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YI--PPADAYFFKLVFH 264 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~--p~~D~i~~~~~lh 264 (360)
-.+.+|||||||.|.++..+++. +.+++++|. +..++.|+. .-.+++.+...++ .. ..||+|+|..+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 36789999999999999999998 699999999 899998874 2335577766655 22 4699999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccC-----CcccCHHHHHHHHHHC
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVD-----GKERTDEEWKTLFLDA 339 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----g~~~t~~e~~~ll~~a 339 (360)
|.++++ .+++.+.+.++| ||.+++........... ............... .+...++|+..++.++
T Consensus 136 Hv~dp~--~~~~~c~~lvkP---~G~lf~STinrt~ka~~----~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~ 206 (243)
T COG2227 136 HVPDPE--SFLRACAKLVKP---GGILFLSTINRTLKAYL----LAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGA 206 (243)
T ss_pred ccCCHH--HHHHHHHHHcCC---CcEEEEeccccCHHHHH----HHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccC
Confidence 999986 489999999999 99999877664332111 000011111111111 2445789999999999
Q ss_pred CCceeEEEee
Q 018116 340 GFTHYKITNV 349 (360)
Q Consensus 340 Gf~~~~~~~~ 349 (360)
|+.+.....+
T Consensus 207 ~~~~~~~~g~ 216 (243)
T COG2227 207 NLKIIDRKGL 216 (243)
T ss_pred CceEEeecce
Confidence 9998887665
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.2e-13 Score=116.98 Aligned_cols=146 Identities=16% Similarity=0.193 Sum_probs=101.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~D~i~~~~~lh~ 265 (360)
.+..+|||||||+|.++..+++.. .+++++|. +.+++.+++ .+++++..+|+......||+|++..++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456899999999999999999874 56999999 888887764 25899999995433346999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc--ccCCcccCHHHHHHHHHHCCCce
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV--SVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
+++++...+++++.+.+++ +.++... +..... ............. .......+.++|.++++++||++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~---~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG----SLIFTFA---PYTPLL---ALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC----eEEEEEC---CccHHH---HHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 9999888999999987643 4443322 111100 0000000000000 01123458899999999999999
Q ss_pred eEEEeeCC
Q 018116 344 YKITNVFG 351 (360)
Q Consensus 344 ~~~~~~~~ 351 (360)
.++.....
T Consensus 210 ~~~~~~~~ 217 (230)
T PRK07580 210 VRTERISS 217 (230)
T ss_pred Eeeeeccc
Confidence 99887744
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=114.70 Aligned_cols=153 Identities=11% Similarity=0.045 Sum_probs=104.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEEeccccccCChhH
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDED 270 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~ 270 (360)
+..+|||||||+|.++..+++.+ +.+++++|. ++|++.++.. ..++.+|+.. |++ .||+|++..++||+++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~- 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI- 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH-
Confidence 46899999999999999999887 679999999 9999998753 3467788876 555 49999999999998875
Q ss_pred HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh--hhc-ccCC-------------cccCHHHHHH
Q 018116 271 CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL--MSV-SVDG-------------KERTDEEWKT 334 (360)
Q Consensus 271 ~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~--~~~-~~~g-------------~~~t~~e~~~ 334 (360)
.+.|++++++|+| . +.+++...++......+ ...+.... ... ..++ ...+.+++.+
T Consensus 127 -~~~l~e~~RvLkp---~--~~ile~~~p~~~~~~~~--~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~ 198 (226)
T PRK05785 127 -EKVIAEFTRVSRK---Q--VGFIAMGKPDNVIKRKY--LSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHRE 198 (226)
T ss_pred -HHHHHHHHHHhcC---c--eEEEEeCCCCcHHHHHH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHH
Confidence 4689999999998 4 33445443332111000 00000000 000 0111 2237899999
Q ss_pred HHHHCCCceeEEEeeCCc-eeEEEEeC
Q 018116 335 LFLDAGFTHYKITNVFGL-KSLIEVYP 360 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~~~-~~vi~~~~ 360 (360)
+++++| ..++...+.++ ..+..++|
T Consensus 199 ~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 199 IFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHh-CceEEEEccccEEEEEEEee
Confidence 999984 76788887555 44555543
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-13 Score=115.92 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=89.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCC--CccEEEeccccccCCh
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQYIP--PADAYFFKLVFHAFGD 268 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~~~~ 268 (360)
..+..+|||||||+|..+..+++..|+.+++++|+ +.+++.+++ ..++++..+|+.++.+ .||+|++..++||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34677999999999999999999889999999999 999999876 5678899999887554 5999999999999998
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
++..++++++.+++ ++.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~-----~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS-----NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc-----CcEEEEEEeeCCC
Confidence 88889999999986 3688888886554
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.1e-13 Score=117.19 Aligned_cols=136 Identities=18% Similarity=0.245 Sum_probs=103.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCC--CccEEEeccccccCCh
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGD 268 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~ 268 (360)
...+|||||||+|.++..+++.+|..+++++|. +.+++.++. .++++++.+|+.. +.+ .||+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 357999999999999999999999999999999 888776654 3588999999876 433 5999999999998876
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEE
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKIT 347 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
. .++|++++++|+| ||.+++.+....... ....... .......+.++|.++++++ |+...+.
T Consensus 114 ~--~~~l~~~~~~L~~---~G~l~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 L--SQALSELARVLKP---GGLLAFSTFGPGTLH------ELRQSFG-----QHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred H--HHHHHHHHHHcCC---CcEEEEEeCCccCHH------HHHHHHH-----HhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4 5789999999999 999998765432211 1001110 0123456889999999988 8766543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.2e-13 Score=124.54 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=112.7
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCCCCCCccEEEe
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQYIPPADAYFF 259 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~~~p~~D~i~~ 259 (360)
.+++.++ ..++.+|||||||+|.++..+++.+ +++++++|+ +.+++.+++ ...+++...|.......||.|++
T Consensus 158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence 3445555 6678899999999999999999876 679999999 888887764 33578888887543346999999
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHC
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDA 339 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~a 339 (360)
..+++|.++.....++++++++|+| ||.+++.+...+...... ..+.+- ....+|...+.+++...++ .
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~~-----~~~i~~--yifp~g~lps~~~i~~~~~-~ 303 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTNV-----DPWINK--YIFPNGCLPSVRQIAQASE-G 303 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCCC-----CCCcee--eecCCCcCCCHHHHHHHHH-C
Confidence 9999999887778899999999999 999999876554322110 011111 1223566778888888766 5
Q ss_pred CCceeEEEee
Q 018116 340 GFTHYKITNV 349 (360)
Q Consensus 340 Gf~~~~~~~~ 349 (360)
||.+.++..+
T Consensus 304 ~~~v~d~~~~ 313 (383)
T PRK11705 304 LFVMEDWHNF 313 (383)
T ss_pred CcEEEEEecC
Confidence 8988877655
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.9e-13 Score=129.63 Aligned_cols=143 Identities=13% Similarity=0.184 Sum_probs=110.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC---CCC--
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ---YIP-- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~---~~p-- 252 (360)
..+++.++ ..+..+|||||||+|.++..+++.+ .+++++|. +.+++.++. .+++.++.+|+.. +++
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 34445454 4456799999999999999999874 48999999 888876642 4679999999864 344
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
.||+|++..++||+++++..++|++++++|+| ||.+++.|.+........ .. ......++...|
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~~------~~-------~~~~~~~~~~~~ 166 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDSK------RK-------NNPTHYREPRFY 166 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCccc------cc-------CCCCeecChHHH
Confidence 59999999999999998889999999999999 999999987754432110 00 011234578899
Q ss_pred HHHHHHCCCceeE
Q 018116 333 KTLFLDAGFTHYK 345 (360)
Q Consensus 333 ~~ll~~aGf~~~~ 345 (360)
.++|.++||....
T Consensus 167 ~~~f~~~~~~~~~ 179 (475)
T PLN02336 167 TKVFKECHTRDED 179 (475)
T ss_pred HHHHHHheeccCC
Confidence 9999999997553
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-13 Score=110.40 Aligned_cols=176 Identities=19% Similarity=0.168 Sum_probs=115.1
Q ss_pred HHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCe
Q 018116 168 QRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENL 240 (360)
Q Consensus 168 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri 240 (360)
..|++.|.++..-+...+-.-.. .+....+|+||||+|..-. +-.--|.++++.+|. +.|.+.+.+ ...+
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~g--k~~K~~vLEvgcGtG~Nfk-fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLG--KSGKGDVLEVGCGTGANFK-FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhc--ccCccceEEecccCCCCcc-cccCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 34566666553322222221111 3456689999999997532 222237889999999 888776543 5567
Q ss_pred E-EEeCCCCC-C-CC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhh
Q 018116 241 K-YIAGDMFQ-Y-IP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGD 315 (360)
Q Consensus 241 ~-~~~~D~~~-~-~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d 315 (360)
. |+.++..+ + .+ +||+|++..+|+ +.++.++.|++++++|+| ||+++++|.+..+-.....+ .+...+
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLC--Sve~~~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~i--~q~v~e 200 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLC--SVEDPVKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNRI--LQQVAE 200 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEe--ccCCHHHHHHHHHHhcCC---CcEEEEEecccccchHHHHH--HHHHhc
Confidence 6 88887766 3 34 599999999998 555568999999999999 99999999988765433211 111122
Q ss_pred hhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeCCcee
Q 018116 316 TLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKS 354 (360)
Q Consensus 316 ~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 354 (360)
-.......|-..|.+-| +++++|-|+..+......+..
T Consensus 201 p~~~~~~dGC~ltrd~~-e~Leda~f~~~~~kr~~~~tt 238 (252)
T KOG4300|consen 201 PLWHLESDGCVLTRDTG-ELLEDAEFSIDSCKRFNFGTT 238 (252)
T ss_pred hhhheeccceEEehhHH-HHhhhcccccchhhcccCCce
Confidence 11111234555677666 667889999888877755443
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=119.70 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=101.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~ 265 (360)
.+..+|||||||+|..+..+++. +.+++++|. +.+++.+++ .-++++...|+.. ..+ .||+|++..++|+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence 34569999999999999999885 689999999 888876653 3368888888866 334 5999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
+++++...+++++.++|+| ||.++++.....+....+ .. ....++.++++++++. |+++.
T Consensus 197 l~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~~--------~p-------~~~~~~~~el~~~~~~--~~i~~ 256 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPCP--------MP-------FSFTFKEGELKDYYQD--WEIVK 256 (287)
T ss_pred CCHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCCC--------CC-------CCcccCHHHHHHHhCC--CEEEE
Confidence 9988889999999999999 999887665443321110 00 0123578999999964 88877
Q ss_pred EE
Q 018116 346 IT 347 (360)
Q Consensus 346 ~~ 347 (360)
..
T Consensus 257 ~~ 258 (287)
T PRK12335 257 YN 258 (287)
T ss_pred Ee
Confidence 63
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.5e-14 Score=119.45 Aligned_cols=143 Identities=19% Similarity=0.179 Sum_probs=108.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CC----CeEEEeCCCCCCCCCccEEEeccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------TE----NLKYIAGDMFQYIPPADAYFFKLV 262 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~----ri~~~~~D~~~~~p~~D~i~~~~~ 262 (360)
+.+|||||||+|.+++.|++. +..++|+|. +.+++.|+. .. |++|.+.|.....+.||.|++..+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 478999999999999999998 689999999 889888763 22 578888888766667999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhccc-----CCcccCHHHHHHHHH
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV-----DGKERTDEEWKTLFL 337 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~g~~~t~~e~~~ll~ 337 (360)
++|..|+ ..+++.+.+.|+| ||+++|.+....-.... ......+....... ..+..++++...+++
T Consensus 168 leHV~dp--~~~l~~l~~~lkP---~G~lfittinrt~lS~~----~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~ 238 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKP---NGRLFITTINRTILSFA----GTIFLAEIVLRIVPKGTHTWEKFINPEELTSILN 238 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCC---CCceEeeehhhhHHHhh----ccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHH
Confidence 9999876 4789999999999 99999988655432211 11112222222221 234568999999999
Q ss_pred HCCCceeEEEee
Q 018116 338 DAGFTHYKITNV 349 (360)
Q Consensus 338 ~aGf~~~~~~~~ 349 (360)
.+|+.+..+...
T Consensus 239 ~~~~~v~~v~G~ 250 (282)
T KOG1270|consen 239 ANGAQVNDVVGE 250 (282)
T ss_pred hcCcchhhhhcc
Confidence 999988776544
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-12 Score=108.54 Aligned_cols=134 Identities=15% Similarity=0.202 Sum_probs=105.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCC-CCccEEEeccccccC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYI-PPADAYFFKLVFHAF 266 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~-p~~D~i~~~~~lh~~ 266 (360)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+.. +.||+|+++..+|+.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 3457899999999999999999866 8999999 888887764 346888999987633 369999999888766
Q ss_pred Chh-------------------HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCccc
Q 018116 267 GDE-------------------DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKER 327 (360)
Q Consensus 267 ~~~-------------------~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~ 327 (360)
+++ ...++|+++.++|+| ||++++.+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~---------------------------- 144 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN---------------------------- 144 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC----------------------------
Confidence 542 135789999999999 999988763221
Q ss_pred CHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 328 TDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
...++.+++++.||....+......+--+++||
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 246778999999999998888877777666664
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-13 Score=104.52 Aligned_cols=88 Identities=18% Similarity=0.373 Sum_probs=73.9
Q ss_pred EEEeCCCCchHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--CCCccEEEec-ccccc
Q 018116 199 IVDVGGGNGGFSKIISEAF---PGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-Y--IPPADAYFFK-LVFHA 265 (360)
Q Consensus 199 iLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~--~p~~D~i~~~-~~lh~ 265 (360)
|||+|||+|..+..+++.+ |..+++++|+ +.+++.+++ ..++++++.|+.+ + .+.||+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999997 5689999999 999988764 3589999999977 3 2369999995 55999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCc
Q 018116 266 FGDEDCLKILKKCREAIAGNGERG 289 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG 289 (360)
+++++..++++++.+.|+| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p---gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP---GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE---EE
T ss_pred CCHHHHHHHHHHHHHHhCC---CC
Confidence 9999999999999999999 76
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6e-12 Score=109.97 Aligned_cols=140 Identities=10% Similarity=0.107 Sum_probs=98.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHh----cCCCCCCeEEEeCCCCCC-----CC-CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVA----NMPQTENLKYIAGDMFQY-----IP-PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~ri~~~~~D~~~~-----~p-~~D~i~~~~ 261 (360)
..++.+|||+|||+|.++..+++..+..+++++|. +.+++ .++...++.++.+|...+ .+ .+|+|++
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~-- 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ-- 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE--
Confidence 66788999999999999999999887678999999 87666 334356799999998652 12 4999873
Q ss_pred ccccCChh-HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 262 VFHAFGDE-DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 262 ~lh~~~~~-~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
+.+++ +...+|+++++.|+| ||+++|.-...+-.... ...+..++..++++++|
T Consensus 148 ---d~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~~~d~~~-------------------~~~~~~~~~~~~l~~aG 202 (226)
T PRK04266 148 ---DVAQPNQAEIAIDNAEFFLKD---GGYLLLAIKARSIDVTK-------------------DPKEIFKEEIRKLEEGG 202 (226)
T ss_pred ---CCCChhHHHHHHHHHHHhcCC---CcEEEEEEecccccCcC-------------------CHHHHHHHHHHHHHHcC
Confidence 34433 334568999999999 99999842211100000 00011244459999999
Q ss_pred CceeEEEeeCCc---eeEEEEe
Q 018116 341 FTHYKITNVFGL---KSLIEVY 359 (360)
Q Consensus 341 f~~~~~~~~~~~---~~vi~~~ 359 (360)
|+.++...+..+ +.+++++
T Consensus 203 F~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 203 FEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred CeEEEEEcCCCCcCCeEEEEEE
Confidence 999999888544 6665554
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-12 Score=109.12 Aligned_cols=121 Identities=19% Similarity=0.295 Sum_probs=94.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-CccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP-PADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p-~~D~i~~~~~lh 264 (360)
..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|...+.+ .||+|++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 45778999999999999999999999999999999 888877753 3579999998855444 599999876654
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCcee
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHY 344 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 344 (360)
+ ...+++.+.+.|+| ||++++..... .+.+++.+++++.||+.+
T Consensus 109 ~-----~~~~l~~~~~~Lk~---gG~lv~~~~~~----------------------------~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 N-----LTAIIDWSLAHLHP---GGRLVLTFILL----------------------------ENLHSALAHLEKCGVSEL 152 (187)
T ss_pred C-----HHHHHHHHHHhcCC---CeEEEEEEecH----------------------------hhHHHHHHHHHHCCCCcc
Confidence 3 24578999999999 89887743211 134677788999999876
Q ss_pred EEEee
Q 018116 345 KITNV 349 (360)
Q Consensus 345 ~~~~~ 349 (360)
++...
T Consensus 153 ~~~~~ 157 (187)
T PRK08287 153 DCVQL 157 (187)
T ss_pred eEEEE
Confidence 65443
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=118.45 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=101.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCCCCccEEEeccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQYIPPADAYFFKLV 262 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~~p~~D~i~~~~~ 262 (360)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++|...|+......||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4679999999999999999986 679999999 889877653 13578888887543346999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhh-c-ccCCcccCHHHHHHHHHHCC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMS-V-SVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~g~~~t~~e~~~ll~~aG 340 (360)
+||++++....+++.+.+ +.+ |+++|.. .+.... +............ . .......+.++++++++++|
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~----g~liIs~--~p~~~~---~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AG 291 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAE----KRLIISF--APKTLY---YDILKRIGELFPGPSKATRAYLHAEADVERALKKAG 291 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcC----CEEEEEe--CCcchH---HHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCC
Confidence 999998877788888875 444 5555532 122110 0000011010000 0 00011237999999999999
Q ss_pred CceeEEEeeCCce---eEEEEeC
Q 018116 341 FTHYKITNVFGLK---SLIEVYP 360 (360)
Q Consensus 341 f~~~~~~~~~~~~---~vi~~~~ 360 (360)
|++.+.......+ .++|++|
T Consensus 292 f~v~~~~~~~~~~y~~~l~~~~~ 314 (315)
T PLN02585 292 WKVARREMTATQFYFSRLLEAVP 314 (315)
T ss_pred CEEEEEEEeecceeHHhhhhhcc
Confidence 9988766554332 2555543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.3e-12 Score=108.98 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=100.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-C---
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP------------------QTENLKYIAGDMFQ-Y--- 250 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~ri~~~~~D~~~-~--- 250 (360)
.+..+|||+|||.|..+..|+++ +.+++++|+ +.+++.+. +..+|++.++|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999986 889999999 88887641 13579999999988 3
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHH
Q 018116 251 IPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDE 330 (360)
Q Consensus 251 ~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~ 330 (360)
.+.||.|+-..++||++.+.....++++.++|+| ||++++.....+...... .-...+.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~~g-----------------pp~~~~~~ 170 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEMAG-----------------PPFSVSPA 170 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCCCC-----------------cCCCCCHH
Confidence 2359999999999999999999999999999999 898777766543211100 00134889
Q ss_pred HHHHHHHHCCCceeEEE
Q 018116 331 EWKTLFLDAGFTHYKIT 347 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~ 347 (360)
++.++|+. +|.+..+.
T Consensus 171 eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 171 EVEALYGG-HYEIELLE 186 (213)
T ss_pred HHHHHhcC-CceEEEEe
Confidence 99998864 45554443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-12 Score=115.15 Aligned_cols=97 Identities=19% Similarity=0.349 Sum_probs=78.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--CC-Cc-----cE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY--IP-PA-----DA 256 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~--~p-~~-----D~ 256 (360)
.+..+|||+|||+|..+..|+++++ ..+++++|+ ++|++.+.+ ..+|.++++|+.+. .+ .+ .+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3567899999999999999999987 689999999 888876643 23567789999762 22 23 34
Q ss_pred EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 257 YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
+++..++++++++++..+|++++++|+| ||.++|
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 5556789999999999999999999999 888876
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-12 Score=114.55 Aligned_cols=96 Identities=14% Similarity=0.266 Sum_probs=79.6
Q ss_pred CCCCEEEEeCCCCchHH-HHHH-HHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC---CCccEEEe
Q 018116 194 EGLGSIVDVGGGNGGFS-KIIS-EAFPGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQYI---PPADAYFF 259 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~-~~l~-~~~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~~~---p~~D~i~~ 259 (360)
.++++|+|||||.|.++ +.++ +.+|+.+++++|. +.+++.|++ .++++|+.+|..+.. .+||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 47899999999988543 3333 4679999999999 888887663 478999999997732 36999999
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
. ++|+|..++..++|+++++.|+| ||.+++
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvl 231 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLML 231 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCC---CcEEEE
Confidence 9 99999877778999999999999 888877
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.8e-12 Score=105.76 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=89.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C-CCCccEEEecccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y-IPPADAYFFKLVFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~-~p~~D~i~~~~~lh~ 265 (360)
++.+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ . ...||+|++.. +++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 368999999999999999999999999999999 777765542 3579999999976 2 23699998865 543
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHH---CCCc
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLD---AGFT 342 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~---aGf~ 342 (360)
+ ..+++.+++.|+| ||++++... . ....++..+.++ .||+
T Consensus 121 ~-----~~~~~~~~~~Lkp---gG~lvi~~~---~--------------------------~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 121 L-----NVLLELTLNLLKV---GGYFLAYKG---K--------------------------KYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred H-----HHHHHHHHHhcCC---CCEEEEEcC---C--------------------------CcHHHHHHHHHhhhhcCce
Confidence 3 3468888999999 999887531 0 023344444444 7999
Q ss_pred eeEEEeeCCce
Q 018116 343 HYKITNVFGLK 353 (360)
Q Consensus 343 ~~~~~~~~~~~ 353 (360)
.+++.+...+.
T Consensus 164 ~~~~~~~~~~~ 174 (181)
T TIGR00138 164 PLEVPPLTGPD 174 (181)
T ss_pred EeeccccCCCc
Confidence 99888875543
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.9e-12 Score=106.61 Aligned_cols=140 Identities=17% Similarity=0.203 Sum_probs=96.9
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-Cc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~ 254 (360)
..+++..+ ..+..++||+|||.|..+..|+++ +..|+++|. +..++.+.+ .-.|+....|+.+ .++ .|
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 34555555 456789999999999999999998 899999999 777776542 4458899999977 454 59
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..++++++.+...++++++.+.++| ||.+++...+.....+.+ . .. ...+.+.|+.+
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~~~d~p~~------~--~~-------~f~~~~~EL~~ 157 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFMETPDYPCP------S--PF-------PFLLKPGELRE 157 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB--SSS--S------S-----------S--B-TTHHHH
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecccCCCCCC------C--CC-------CcccCHHHHHH
Confidence 999999999999999999999999999999 888777655433221110 0 00 12335678888
Q ss_pred HHHHCCCceeEE
Q 018116 335 LFLDAGFTHYKI 346 (360)
Q Consensus 335 ll~~aGf~~~~~ 346 (360)
.++ ||.++..
T Consensus 158 ~y~--dW~il~y 167 (192)
T PF03848_consen 158 YYA--DWEILKY 167 (192)
T ss_dssp HTT--TSEEEEE
T ss_pred HhC--CCeEEEE
Confidence 885 6877654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.8e-12 Score=110.54 Aligned_cols=154 Identities=16% Similarity=0.086 Sum_probs=103.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHh------cCC-CCCCeEEEeCCCCC-C-CC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVA------NMP-QTENLKYIAGDMFQ-Y-IP 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~------~a~-~~~ri~~~~~D~~~-~-~p 252 (360)
+.+...++ --.+++|||||||+|.++..++.+.+ -.++|+|. +...- ... ...++.+...-+.. + ..
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 34455554 34678999999999999999999844 36899997 33222 211 12333444333322 2 23
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
.||+|++..||+|..++ ...|+.+++.|+| ||.|++-..+.+...... +.+...+. .|.. --...|...+
T Consensus 182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~-L~P~~rYa--~m~n--v~FiPs~~~L 251 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLETLVIDGDENTV-LVPEDRYA--KMRN--VWFIPSVAAL 251 (315)
T ss_pred CcCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEEEeeecCCCceE-EccCCccc--CCCc--eEEeCCHHHH
Confidence 59999999999998887 5789999999999 898888777777654321 11111111 1110 1234599999
Q ss_pred HHHHHHCCCceeEEEee
Q 018116 333 KTLFLDAGFTHYKITNV 349 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~ 349 (360)
..+++++||+.+++...
T Consensus 252 ~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 252 KNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHcCCceEEEecC
Confidence 99999999999998776
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-11 Score=102.76 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=91.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-CccEEEeccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP-PADAYFFKLVFH 264 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh 264 (360)
+++.+|||||||+|..+..++++.|+.+++++|. +.+++.+++ .++++++.+|+.+ +.. .||+|++...
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 3478999999999999999999999999999999 888877663 3459999999876 223 5999998652
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCcee
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHY 344 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 344 (360)
. ....+++.+++.|+| ||++++.+... ...++.++.++.|+++.
T Consensus 122 --~--~~~~~l~~~~~~Lkp---GG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 --A--SLSDLVELCLPLLKP---GGRFLALKGRD-----------------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred --c--CHHHHHHHHHHhcCC---CeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceEe
Confidence 1 245789999999999 99998864210 23445666677799877
Q ss_pred EEEee
Q 018116 345 KITNV 349 (360)
Q Consensus 345 ~~~~~ 349 (360)
+++..
T Consensus 166 ~~~~~ 170 (187)
T PRK00107 166 EVIEL 170 (187)
T ss_pred eeEEE
Confidence 77655
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-12 Score=107.61 Aligned_cols=132 Identities=17% Similarity=0.226 Sum_probs=96.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCCC--CccEEEecccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQYIP--PADAYFFKLVFHA 265 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~ 265 (360)
.....+++|+|||.|.++..|+.++ -+++++|. +.+++.+++ .++|+++..|+....| .||+|+++.++|+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4566899999999999999999985 48999999 999988764 6899999999977555 5999999999999
Q ss_pred CCh-hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCcee
Q 018116 266 FGD-EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHY 344 (360)
Q Consensus 266 ~~~-~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 344 (360)
+++ ++...+++++.++|+| ||.|++.... +. ....+ |.....+.+.++|++. |..+
T Consensus 119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~r-d~-----------~c~~w-------gh~~ga~tv~~~~~~~-~~~~ 175 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP---GGHLVFGHAR-DA-----------NCRRW-------GHAAGAETVLEMLQEH-LTEV 175 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE--HH-----------HHHHT-------T-S--HHHHHHHHHHH-SEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC---CCEEEEEEec-CC-----------ccccc-------CcccchHHHHHHHHHH-hhhe
Confidence 986 6788999999999999 8999886642 00 11111 3344678888898886 6666
Q ss_pred EEEee
Q 018116 345 KITNV 349 (360)
Q Consensus 345 ~~~~~ 349 (360)
+...+
T Consensus 176 ~~~~~ 180 (201)
T PF05401_consen 176 ERVEC 180 (201)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 66555
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=114.06 Aligned_cols=108 Identities=20% Similarity=0.300 Sum_probs=86.7
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCCCC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQYIP 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~~~p 252 (360)
..+++.++ .....+|||+|||+|..+..+++++|..+++++|. +.+++.++. ..++++...|.++..+
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 34556665 33346999999999999999999999999999999 788887763 1378999999887543
Q ss_pred --CccEEEecccccc---CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 253 --PADAYFFKLVFHA---FGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 253 --~~D~i~~~~~lh~---~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.||+|+++-.+|. ++++.+.++++.++++|+| ||.++++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 6999999755553 4556677899999999999 99998874
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-11 Score=104.84 Aligned_cols=132 Identities=16% Similarity=0.163 Sum_probs=100.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCCC----
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP------------------QTENLKYIAGDMFQY---- 250 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~ri~~~~~D~~~~---- 250 (360)
.+..+|||+|||.|..+..|+++ +.+++++|+ +.+++.+. ...+|++..+|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999986 889999999 88777542 146799999999873
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHH
Q 018116 251 IPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDE 330 (360)
Q Consensus 251 ~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~ 330 (360)
.+.||+|+-..++|+++.+...+.++++.++|+| ||+++++....++..... .-...+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~~g-----------------Pp~~~~~~ 173 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEELAG-----------------PPFSVSDE 173 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccCCC-----------------CCCCCCHH
Confidence 2369999999999999999999999999999999 887666555443221100 00134889
Q ss_pred HHHHHHHHCCCceeEEEe
Q 018116 331 EWKTLFLDAGFTHYKITN 348 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~ 348 (360)
++.++|.. +|.+..+..
T Consensus 174 el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 174 EVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHhcC-CceEEEeee
Confidence 99999964 366555543
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-12 Score=107.81 Aligned_cols=139 Identities=18% Similarity=0.266 Sum_probs=98.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCC-eEEEeCCCCC--CCC-CccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TEN-LKYIAGDMFQ--YIP-PADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~r-i~~~~~D~~~--~~p-~~D~i~~~~~l 263 (360)
.+..+.||.|+|.|..+..++-.. --++-.+|. +..++.|++ ..+ .++.+.-+.+ |.+ .||+|++.+++
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 356899999999999998876543 336788888 888877763 234 4566555544 433 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCce
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
.|++|++.+++|++++++|+| +|.|+|=|.+....... +|- ..++-.|+.+.|+++|++||+++
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~~---------~D~----~DsSvTRs~~~~~~lF~~AGl~~ 196 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFDE---------FDE----EDSSVTRSDEHFRELFKQAGLRL 196 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEEE---------EET----TTTEEEEEHHHHHHHHHHCT-EE
T ss_pred ccCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCcc---------cCC----ccCeeecCHHHHHHHHHHcCCEE
Confidence 999999999999999999999 89999999887654211 111 12345789999999999999998
Q ss_pred eEEEee
Q 018116 344 YKITNV 349 (360)
Q Consensus 344 ~~~~~~ 349 (360)
++...-
T Consensus 197 v~~~~Q 202 (218)
T PF05891_consen 197 VKEEKQ 202 (218)
T ss_dssp EEEEE-
T ss_pred EEeccc
Confidence 886544
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-11 Score=107.78 Aligned_cols=149 Identities=17% Similarity=0.126 Sum_probs=100.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--C-CCccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-Y--I-PPADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~--~-p~~D~i~~~~~l 263 (360)
.+..+|||||||+|.++..+++. ..+++++|. +.+++.++. ..++++...|+.. + . ..||+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45789999999999999988875 578999999 787776653 3457788777754 2 2 259999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc-cCCcccCHHHHHHHHHHCCCc
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS-VDGKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g~~~t~~e~~~ll~~aGf~ 342 (360)
++.++. ..+|+++.+.|+| ||.+++........................-... ...+..+.++|.++++++||+
T Consensus 125 ~~~~~~--~~~l~~~~~~L~~---gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 125 EHVPDP--ASFVRACAKLVKP---GGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred hccCCH--HHHHHHHHHHcCC---CcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 998875 4689999999999 9998876543111000000000000000000000 012345889999999999999
Q ss_pred eeEEEee
Q 018116 343 HYKITNV 349 (360)
Q Consensus 343 ~~~~~~~ 349 (360)
+++....
T Consensus 200 ~v~~~~~ 206 (233)
T PRK05134 200 VQDITGL 206 (233)
T ss_pred EeeeeeE
Confidence 9887643
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.9e-12 Score=105.98 Aligned_cols=144 Identities=22% Similarity=0.261 Sum_probs=108.9
Q ss_pred EEEEeCCCCchHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC-----C-C-CccEEEeccc
Q 018116 198 SIVDVGGGNGGFSKIISEAFPG--IKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQY-----I-P-PADAYFFKLV 262 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~-----~-p-~~D~i~~~~~ 262 (360)
+||+||||.|.....+++..|+ +++..+|. |.+++..++ ..++.-...|+..+ . + ..|++++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999999999987 89999999 999887764 45666666676542 1 1 4999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCC---cccCHHHHHHHHHHC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDG---KERTDEEWKTLFLDA 339 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g---~~~t~~e~~~ll~~a 339 (360)
|.-++++.....+++++++|+| ||.|++-|....+-.... +. ....++-+..+...| -.++.+++.++|.++
T Consensus 154 LSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHHh-cc-CCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 9999999999999999999999 999999988765422110 00 112222233332223 235899999999999
Q ss_pred CCceeEE
Q 018116 340 GFTHYKI 346 (360)
Q Consensus 340 Gf~~~~~ 346 (360)
||..++.
T Consensus 229 gf~~~~~ 235 (264)
T KOG2361|consen 229 GFEEVQL 235 (264)
T ss_pred ccchhcc
Confidence 9986654
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-11 Score=103.51 Aligned_cols=142 Identities=13% Similarity=0.123 Sum_probs=94.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCC--CccEEEeccccccCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ---YIP--PADAYFFKLVFHAFG 267 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~---~~p--~~D~i~~~~~lh~~~ 267 (360)
++..+|||||||+|.++..+++. ...+++++|+ +++++.++ ..+++++.+|+.+ +.+ .||+|++.+++||++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~-~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACV-ARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHH-HcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 35679999999999999888865 4668899999 88888775 3468888888865 233 599999999999998
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh----------hcccCCcccCHHHHHHHHH
Q 018116 268 DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM----------SVSVDGKERTDEEWKTLFL 337 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~----------~~~~~g~~~t~~e~~~ll~ 337 (360)
+. .++|+++.+.+++ +++.- ++..... . .......-.+ ......+..+.+++.++++
T Consensus 90 d~--~~~l~e~~r~~~~------~ii~~---p~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~ 156 (194)
T TIGR02081 90 NP--EEILDEMLRVGRH------AIVSF---PNFGYWR-V-RWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCG 156 (194)
T ss_pred CH--HHHHHHHHHhCCe------EEEEc---CChhHHH-H-HHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHH
Confidence 75 4678888665443 33321 1110000 0 0000000000 0001124568999999999
Q ss_pred HCCCceeEEEeeC
Q 018116 338 DAGFTHYKITNVF 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
++||++++....+
T Consensus 157 ~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 157 ELNLRILDRAAFD 169 (194)
T ss_pred HCCCEEEEEEEec
Confidence 9999999877663
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=95.57 Aligned_cols=94 Identities=17% Similarity=0.278 Sum_probs=76.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---C-CCCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ---Y-IPPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~---~-~p~~D~i~~~~ 261 (360)
..+..+|||+|||+|.++..+++++|..+++++|+ +.+++.+++ ..+++++.+|... . .+.||+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 45567999999999999999999999999999999 888877653 3578999888754 1 23699999876
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
..+ ...++++++++.|+| ||++++.
T Consensus 97 ~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 97 SGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred cch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 543 235789999999999 8988774
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.7e-11 Score=97.79 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=98.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC---CC--CccEEEeccccccC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY---IP--PADAYFFKLVFHAF 266 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~---~p--~~D~i~~~~~lh~~ 266 (360)
.+++.+|||+|||.|.++..|.+. .++++.|+|+ ++.+..+. ...++++.+|+.+. +| .||.|+++.+|.++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 367899999999999999888875 6999999999 65554443 56688999999773 55 59999999999998
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh----hhcc----------cCCcccCHHHH
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL----MSVS----------VDGKERTDEEW 332 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~----~~~~----------~~g~~~t~~e~ 332 (360)
..++ ++|+++.| - |.+.+|.-+-+ .-+.....+. |-.. .|=...|..++
T Consensus 89 ~~P~--~vL~EmlR---V---gr~~IVsFPNF---------g~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DF 151 (193)
T PF07021_consen 89 RRPD--EVLEEMLR---V---GRRAIVSFPNF---------GHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDF 151 (193)
T ss_pred hHHH--HHHHHHHH---h---cCeEEEEecCh---------HHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHH
Confidence 7764 56888854 4 55566533211 1111111111 1000 11234489999
Q ss_pred HHHHHHCCCceeEEEeeCC
Q 018116 333 KTLFLDAGFTHYKITNVFG 351 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~~ 351 (360)
++++++.|+++.+...+.+
T Consensus 152 e~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 152 EDLCRELGIRIEERVFLDG 170 (193)
T ss_pred HHHHHHCCCEEEEEEEEcC
Confidence 9999999999999888754
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.2e-11 Score=103.76 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=100.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-CeEEEeCCCCC-C--C-CCccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TE-NLKYIAGDMFQ-Y--I-PPADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-ri~~~~~D~~~-~--~-p~~D~i~~~~~l 263 (360)
...+|||+|||+|.++..+++. ..+++++|. +.+++.++. .. ++++...|+.+ + . ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4679999999999999988876 356999999 778776653 22 68888888765 2 2 259999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhh-hhhc-c-----cCCcccCHHHHHHHH
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDT-LMSV-S-----VDGKERTDEEWKTLF 336 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~-~-----~~g~~~t~~e~~~ll 336 (360)
|+..+. ..+|+++.+.|+| ||.+++........ . ........ .... . ......+..+|.+++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~---gG~l~i~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 191 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKP---GGILFFSTINRTPK--S----YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWL 191 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCC---CcEEEEEecCCCch--H----HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHH
Confidence 998875 4689999999999 89988765432110 0 00000000 0000 0 012344788999999
Q ss_pred HHCCCceeEEEee
Q 018116 337 LDAGFTHYKITNV 349 (360)
Q Consensus 337 ~~aGf~~~~~~~~ 349 (360)
+++||+++++...
T Consensus 192 ~~~G~~i~~~~~~ 204 (224)
T TIGR01983 192 ESAGLRVKDVKGL 204 (224)
T ss_pred HHcCCeeeeeeeE
Confidence 9999999887644
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-11 Score=99.86 Aligned_cols=98 Identities=26% Similarity=0.439 Sum_probs=80.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CccEEEecccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP--PADAYFFKLVFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~ 265 (360)
...+|||+|||+|..+..+++.+|..+++++|+ +.+++.++. .+.+++...|.++..+ .||+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 678999999999999999999999999999999 888887764 2339999999988655 6999999877765
Q ss_pred CCh---hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 266 FGD---EDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 266 ~~~---~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
-.+ +-..++++.+.+.|+| ||.++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 443 3467899999999999 99997644
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-10 Score=99.91 Aligned_cols=133 Identities=11% Similarity=0.068 Sum_probs=92.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hH----HHhcCCCCCCeEEEeCCCCCC------CCCccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PH----AVANMPQTENLKYIAGDMFQY------IPPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~ri~~~~~D~~~~------~p~~D~i~~~ 260 (360)
+.+..+|||+|||+|.++..+++.. +.-+++++|+ +. +++.+....+|.++.+|+..+ .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5677899999999999999999986 3558999998 54 555555457899999998653 2359999876
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
.. .++ +...++.++++.|+| ||+++|...........+ . ...++ +|. ++|+++|
T Consensus 210 va---~pd-q~~il~~na~r~LKp---GG~~vI~ika~~id~g~~---p--------------e~~f~-~ev-~~L~~~G 263 (293)
T PTZ00146 210 VA---QPD-QARIVALNAQYFLKN---GGHFIISIKANCIDSTAK---P--------------EVVFA-SEV-QKLKKEG 263 (293)
T ss_pred CC---Ccc-hHHHHHHHHHHhccC---CCEEEEEEeccccccCCC---H--------------HHHHH-HHH-HHHHHcC
Confidence 53 133 344567789999999 999998321111111000 0 00012 344 8889999
Q ss_pred CceeEEEeeCC
Q 018116 341 FTHYKITNVFG 351 (360)
Q Consensus 341 f~~~~~~~~~~ 351 (360)
|+.++...+..
T Consensus 264 F~~~e~v~L~P 274 (293)
T PTZ00146 264 LKPKEQLTLEP 274 (293)
T ss_pred CceEEEEecCC
Confidence 99998888743
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.3e-11 Score=109.15 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=84.9
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-CccEE
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP-PADAY 257 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p-~~D~i 257 (360)
+++.++ .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.++. .-..++...|.+...+ .||+|
T Consensus 188 Ll~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 188 LLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 344454 23346899999999999999999999999999999 888887763 2345677888876544 59999
Q ss_pred EeccccccC---ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 258 FFKLVFHAF---GDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 258 ~~~~~lh~~---~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+++-.+|+. ..+...++++++.+.|+| ||.++|+-.
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 999888863 334567899999999999 999988653
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=103.02 Aligned_cols=123 Identities=21% Similarity=0.354 Sum_probs=93.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CccEEEeccccc-
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP--PADAYFFKLVFH- 264 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p--~~D~i~~~~~lh- 264 (360)
...+|||+|||+|.++..+++.+|+.+++++|. +.+++.++. .++++++.+|+.++.+ .||+|+++-..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 456999999999999999999999999999999 888887763 3479999999987543 599999843322
Q ss_pred -----cCChhH------------------HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc
Q 018116 265 -----AFGDED------------------CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS 321 (360)
Q Consensus 265 -----~~~~~~------------------~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 321 (360)
.+..+. ...+++++.+.|+| ||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~~~------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLEIG------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEEEC-------------------------
Confidence 222111 24688999999999 888877210
Q ss_pred cCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 322 VDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 322 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
....+++.++|+++||+.+++..-
T Consensus 219 ----~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 219 ----YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred ----ccHHHHHHHHHHhCCCCceEEEeC
Confidence 013467889999999998777554
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-10 Score=102.87 Aligned_cols=135 Identities=19% Similarity=0.370 Sum_probs=99.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP--PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p--~~D~i~~~~~l 263 (360)
..+..+|||+|||+|..+..+++.+|..+++++|+ +.+++.+++ ..+++++.+|++.+.+ .||+|+++--.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999999 888876653 3689999999987544 59999884221
Q ss_pred ------ccCCh------------------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhh
Q 018116 264 ------HAFGD------------------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMS 319 (360)
Q Consensus 264 ------h~~~~------------------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 319 (360)
+.+.+ +...++++++.+.|+| ||.+++ +. .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~-----g----------------- 239 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EI-----G----------------- 239 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EE-----C-----------------
Confidence 11111 1235788999999999 888877 21 0
Q ss_pred cccCCcccCHHHHHHHHHHCCCceeEE-EeeCCceeEEEEe
Q 018116 320 VSVDGKERTDEEWKTLFLDAGFTHYKI-TNVFGLKSLIEVY 359 (360)
Q Consensus 320 ~~~~g~~~t~~e~~~ll~~aGf~~~~~-~~~~~~~~vi~~~ 359 (360)
....+++.+++++.||..+++ .+..+...++.++
T Consensus 240 ------~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 240 ------YDQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred ------chHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 012356888999999986666 4445666666655
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.6e-11 Score=101.78 Aligned_cols=98 Identities=16% Similarity=0.210 Sum_probs=77.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCC-CC-C--CC--CccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDM-FQ-Y--IP--PADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~-~~-~--~p--~~D~i~~~~ 261 (360)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+ .. + .+ .||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 568999999999999999999999999999999 888887753 36799999998 33 2 33 499999865
Q ss_pred ccccCC------hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 262 VFHAFG------DEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 262 ~lh~~~------~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
...+.. ......+|++++++|+| ||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 443221 11235789999999999 99998854
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=96.09 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=115.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC------CCCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPG--IKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY------IPPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~------~p~~D~i 257 (360)
...-+||||.||+|.+....+..+|. .++...|+ +..++..++ .+-++|..+|.|+. .|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35689999999999999999999997 78999999 777776553 45559999999983 3568999
Q ss_pred EeccccccCChhHHH-HHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHh--HhhhhhhhcccCCcccCHHHHHH
Q 018116 258 FFKLVFHAFGDEDCL-KILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAK--LLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~-~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~--~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
+.+.....++|.+.+ ..|+.+++++.| ||.|+....-.+++....+....+ ...++.| +.||+.|..+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvM------RrRsq~EmD~ 284 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVM------RRRSQAEMDQ 284 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcchHHHHHHHhcccCCCceEE------EecCHHHHHH
Confidence 999999999997755 479999999999 888877554333322110000000 0011111 5689999999
Q ss_pred HHHHCCCceeEE-EeeCCceeEEEEeC
Q 018116 335 LFLDAGFTHYKI-TNVFGLKSLIEVYP 360 (360)
Q Consensus 335 ll~~aGf~~~~~-~~~~~~~~vi~~~~ 360 (360)
+++++||..+.. .+-.|-++|..|++
T Consensus 285 Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 285 LVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHcCCchhhheeccCCceEEEeecC
Confidence 999999985443 45577788888765
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.17 E-value=4e-10 Score=97.87 Aligned_cols=131 Identities=21% Similarity=0.288 Sum_probs=100.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-CC-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP------------------QTENLKYIAGDMFQ-YI- 251 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~ri~~~~~D~~~-~~- 251 (360)
..+..+||+.|||.|.-+..|+++ +.+++|+|+ +.+++.+. ...+|++.++|+|+ +.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 456789999999999999999987 789999999 88887651 04678999999999 22
Q ss_pred --CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCc--cc
Q 018116 252 --PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGK--ER 327 (360)
Q Consensus 252 --p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~--~~ 327 (360)
..||+|+=..+|+-++++...+..+.++++|+| ||+++++....+.... .|. ..
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~-------------------~GPPf~v 170 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEM-------------------EGPPFSV 170 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCS-------------------SSSS---
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCC-------------------CCcCCCC
Confidence 259999999999999999999999999999999 9996665554433211 121 23
Q ss_pred CHHHHHHHHHHCCCceeEEEe
Q 018116 328 TDEEWKTLFLDAGFTHYKITN 348 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~ 348 (360)
+.+++.++|. .+|++.....
T Consensus 171 ~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 171 TEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp -HHHHHHHHT-TTEEEEEEEE
T ss_pred CHHHHHHHhc-CCcEEEEEec
Confidence 7899999998 7888776654
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-09 Score=97.99 Aligned_cols=123 Identities=20% Similarity=0.268 Sum_probs=88.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~D~i~~~~~lh~ 265 (360)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .+++.+..+|. .||+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc---
Confidence 467899999999999988776653 346999999 888887764 13344433332 5999987532
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
.+....+++++.+.|+| ||.+++..... ...+++.+.+++.||++++
T Consensus 189 --~~~~~~l~~~~~~~Lkp---gG~lilsgi~~----------------------------~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 189 --ANPLLELAPDLARLLKP---GGRLILSGILE----------------------------EQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred --HHHHHHHHHHHHHhcCC---CcEEEEEECcH----------------------------hhHHHHHHHHHHCCCEEEE
Confidence 23346789999999999 99999864321 0346778899999999998
Q ss_pred EEeeCCceeEEEE
Q 018116 346 ITNVFGLKSLIEV 358 (360)
Q Consensus 346 ~~~~~~~~~vi~~ 358 (360)
+....+-.+++.-
T Consensus 236 ~~~~~~W~~~~~~ 248 (250)
T PRK00517 236 VLERGEWVALVGK 248 (250)
T ss_pred EEEeCCEEEEEEE
Confidence 8777665555443
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.8e-10 Score=96.81 Aligned_cols=132 Identities=15% Similarity=0.254 Sum_probs=100.7
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CC-
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---IP- 252 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~p- 252 (360)
++..+.. .....+|||+|||+|..+..++++++..+++++++ +.+.+.|++ .+||++++.|+..- .+
T Consensus 35 LL~~~~~-~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~ 113 (248)
T COG4123 35 LLAAFAP-VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF 113 (248)
T ss_pred HHHhhcc-cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc
Confidence 4444442 34489999999999999999999999999999999 888887764 68999999999762 22
Q ss_pred -CccEEEeccccccCChh----------------HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhh
Q 018116 253 -PADAYFFKLVFHAFGDE----------------DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGD 315 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~----------------~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d 315 (360)
.||+|+|+=-.+.-... ....+++.+.+.|+| ||++.++-..
T Consensus 114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r~------------------ 172 (248)
T COG4123 114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHRP------------------ 172 (248)
T ss_pred cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEecH------------------
Confidence 49999986544332221 256789999999999 9999875421
Q ss_pred hhhhcccCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 316 TLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 316 ~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
-...+|.+++++.+|...++..+
T Consensus 173 -----------erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 173 -----------ERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred -----------HHHHHHHHHHHhcCCCceEEEEe
Confidence 03467888899989988877666
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.1e-10 Score=95.57 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=86.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-CC--
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP------------------QTENLKYIAGDMFQ-YI-- 251 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~ri~~~~~D~~~-~~-- 251 (360)
.+..+||+.|||.|.-+..|+++ +.+++++|+ +.+++.+. ...+|++.++|+++ +.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 35689999999999999999987 889999999 87777631 14689999999998 32
Q ss_pred ---CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 252 ---PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 252 ---p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
..||+|+-..++++++++...+..+.+.++|+| ||+++++....
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~ 166 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEH 166 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEec
Confidence 259999999999999999999999999999999 99998887643
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-09 Score=91.22 Aligned_cols=123 Identities=19% Similarity=0.291 Sum_probs=91.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCC-eEEEeCCCCCCCC--CccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TEN-LKYIAGDMFQYIP--PADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~r-i~~~~~D~~~~~p--~~D~i~~~~~ 262 (360)
.+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ .++ +.++.+|+.++.+ .||+|++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 46679999999999999999988 689999999 888877643 222 8899999887544 5999998654
Q ss_pred cccCC-------------------hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccC
Q 018116 263 FHAFG-------------------DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVD 323 (360)
Q Consensus 263 lh~~~-------------------~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 323 (360)
+...+ ......+++++.++|+| ||.+++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~-------------------------- 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSS-------------------------- 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEcc--------------------------
Confidence 43211 12245689999999999 8988775321
Q ss_pred CcccCHHHHHHHHHHCCCceeEEEee
Q 018116 324 GKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 324 g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
....+++.++++++||++..+...
T Consensus 151 --~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 151 --LTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred --cCCHHHHHHHHHHCCCeeeeeeec
Confidence 013356788999999988776544
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.6e-10 Score=97.82 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=73.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP---PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p---~~D~i~~~ 260 (360)
..+..+|||||||+|..+..+++..+ ..+++++|. +.+++.+++ .++++++.+|+.+..+ .||+|++.
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 45678999999999999999998875 568999999 888876653 2469999999977332 59999999
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
..++++++ ++.+.|+| ||+|++.
T Consensus 150 ~~~~~~~~--------~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 150 AAASTIPS--------ALVRQLKD---GGVLVIP 172 (205)
T ss_pred cCcchhhH--------HHHHhcCc---CcEEEEE
Confidence 88876653 46677999 9998774
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-09 Score=95.37 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=87.2
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-Cc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP-PA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p-~~ 254 (360)
+.+++.++ .....+|||+|||.|.+++.+++.+|..+++.+|. ..+++.++. .++..+...|.+++.+ .|
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 45667777 45555999999999999999999999999999999 788888775 2333577788888655 59
Q ss_pred cEEEeccccccC---ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 255 DAYFFKLVFHAF---GDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 255 D~i~~~~~lh~~---~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
|.|+++=-+|.= ...-..++++.+++.|++ ||.|.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 999998888742 233345899999999999 999988654
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-09 Score=98.16 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=75.5
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CccEEEec------
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP--PADAYFFK------ 260 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p--~~D~i~~~------ 260 (360)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ .++++++.+|++++.+ .||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6999999999999999999999999999999 888887764 3569999999988654 59999985
Q ss_pred -------cccccCCh----------hHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 261 -------LVFHAFGD----------EDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 261 -------~~lh~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.+++|-|. +...++++++.+.|+| ||.+++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEEE
Confidence 23333221 1356789999999999 777654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-09 Score=99.71 Aligned_cols=96 Identities=21% Similarity=0.377 Sum_probs=75.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CccEEEecc---
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP--PADAYFFKL--- 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p--~~D~i~~~~--- 261 (360)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|++++.+ .||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457999999999999999999999999999999 899887764 3589999999987554 599999851
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 262 ----------VFHAFGD----------EDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 262 ----------~lh~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.++|-+. +...++++.+.+.|+| ||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 1121111 1236789999999999 887765
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=95.68 Aligned_cols=123 Identities=14% Similarity=0.151 Sum_probs=91.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCC--CCccEEEeccccccCChhH
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQYI--PPADAYFFKLVFHAFGDED 270 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~~--p~~D~i~~~~~lh~~~~~~ 270 (360)
...+|||+|||+|.++..++++.+..+++++|+ +.+++.+++ .++++++.+|+.+.. ..||+|+++-.+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 346999999999999999998887889999999 999988775 468999999998732 3599999988888765432
Q ss_pred H------------------HHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 271 C------------------LKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 271 ~------------------~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
. .+.++.+...|+| +|.+++. ....+ .+ ....+.++|
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~--yss~~-----------~y---------~~sl~~~~y 198 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA--YSGRP-----------YY---------DGTMKSNKY 198 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE--Eeccc-----------cc---------cccCCHHHH
Confidence 2 3456666777888 7766554 11110 11 123378999
Q ss_pred HHHHHHCCCc
Q 018116 333 KTLFLDAGFT 342 (360)
Q Consensus 333 ~~ll~~aGf~ 342 (360)
+.+++++||.
T Consensus 199 ~~~l~~~g~~ 208 (279)
T PHA03411 199 LKWSKQTGLV 208 (279)
T ss_pred HHHHHhcCcE
Confidence 9999999995
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=93.23 Aligned_cols=93 Identities=24% Similarity=0.293 Sum_probs=74.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C-CCccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I-PPADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~-p~~D~i~~ 259 (360)
..+..+|||+|||+|.++..+++.. +..+++++|. +.+++.+++ .+++.++.+|+.+. . +.||.|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 5678899999999999999998764 5679999999 888886653 36899999998652 2 36999998
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.. ...+...+++.+.+.|+| ||++++
T Consensus 118 ~~-----~~~~~~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 118 GG-----GSEKLKEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CC-----CcccHHHHHHHHHHHcCC---CcEEEE
Confidence 43 223346789999999999 898876
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-09 Score=100.03 Aligned_cols=133 Identities=17% Similarity=0.284 Sum_probs=95.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC-CC---CccEEEeccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQY-IP---PADAYFFKLVFH 264 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~-~p---~~D~i~~~~~lh 264 (360)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+++. .+ .||+|+++--..
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 456999999999999999999999999999999 999987764 45899999999763 22 499999844211
Q ss_pred cCCh-----------------------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc
Q 018116 265 AFGD-----------------------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS 321 (360)
Q Consensus 265 ~~~~-----------------------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 321 (360)
.-.+ +-..++++.+.+.|+| ||.+++ |.-.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~lil-EiG~----------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLLL-EHGF----------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEEE-EECc-----------------------
Confidence 0000 1134677777888998 787654 3211
Q ss_pred cCCcccCHHHHHHHHHHCCCceeEE-EeeCCceeEEEEe
Q 018116 322 VDGKERTDEEWKTLFLDAGFTHYKI-TNVFGLKSLIEVY 359 (360)
Q Consensus 322 ~~g~~~t~~e~~~ll~~aGf~~~~~-~~~~~~~~vi~~~ 359 (360)
...+.+.+++++.||..+++ .++.+...++.++
T Consensus 384 -----~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 384 -----DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred -----cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 13457788899999987665 4456666666554
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-09 Score=92.69 Aligned_cols=103 Identities=16% Similarity=0.281 Sum_probs=76.9
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CC--
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDLPHAVANMPQTENLKYIAGDMFQY---------IP-- 252 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~---------~p-- 252 (360)
+...+. .+.++.+|||||||+|.++..+++.. +..+++++|+.++. ...+++++.+|+.+. .+
T Consensus 42 ~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 42 IQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred HHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 344443 24567899999999999999999986 45799999994432 235699999999873 22
Q ss_pred CccEEEeccccccCChhH---------HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 253 PADAYFFKLVFHAFGDED---------CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~---------~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+|+|++....+....+. ...+|+.+.+.|+| ||.+++..
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~ 165 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKV 165 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEE
Confidence 599999876666543221 24689999999999 99998854
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=90.08 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=82.6
Q ss_pred HHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CCCcc
Q 018116 186 KDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---IPPAD 255 (360)
Q Consensus 186 ~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~p~~D 255 (360)
+.++. ..++.+++|||||+|..++..+..+|..+++.+|. +++++..++ .++++++.+|..+. .+.+|
T Consensus 27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 45555 67889999999999999999999999999999998 777766553 78999999998773 44699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.|++...- ....+|+.+...|+| ||+|++.-
T Consensus 105 aiFIGGg~------~i~~ile~~~~~l~~---ggrlV~na 135 (187)
T COG2242 105 AIFIGGGG------NIEEILEAAWERLKP---GGRLVANA 135 (187)
T ss_pred EEEECCCC------CHHHHHHHHHHHcCc---CCeEEEEe
Confidence 99997752 245789999999999 99998844
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.8e-10 Score=95.70 Aligned_cols=97 Identities=15% Similarity=0.247 Sum_probs=76.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C---CC--CccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y---IP--PADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~---~p--~~D~i~~~~ 261 (360)
...++||||||+|.++..+++++|+.+++++|+ +.+++.+.+ ..+++++.+|+.+ . .+ .+|.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999999 888877653 3589999999965 1 33 488888765
Q ss_pred ccccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 262 VFHAFGDED-------CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 262 ~lh~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
..+ |+... ...+++.++++|+| ||.|++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 433 22211 14689999999999 99998755
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=94.86 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=76.3
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---C
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---P 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---p 252 (360)
.++..+. ..+..+|||||||+|..+..+++.. ++.+++++|+ +.+++.+++ .++++++.+|..... .
T Consensus 67 ~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 67 IMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 3444455 5678899999999999999888875 4579999999 888887764 357999999987632 2
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.||+|++...+++++ +.+.+.|+| ||++++.
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~Lkp---gG~lvi~ 175 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKD---GGIMVIP 175 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCC---CcEEEEE
Confidence 599999987765443 345667999 9998874
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.7e-10 Score=100.52 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCC---CeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CccEEEeccccccC
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPG---IKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAF 266 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~---~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~ 266 (360)
...+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ .+++.+..+|..+ +++ .||+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 4578999999999999999998874 37899999 899988865 5779999999877 554 5999987543
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+ ..+++++++|+| ||+++++.+
T Consensus 161 ~-----~~~~e~~rvLkp---gG~li~~~p 182 (272)
T PRK11088 161 P-----CKAEELARVVKP---GGIVITVTP 182 (272)
T ss_pred C-----CCHHHHHhhccC---CCEEEEEeC
Confidence 1 236788999999 999998753
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=97.88 Aligned_cols=94 Identities=20% Similarity=0.363 Sum_probs=75.3
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CccEEEecc-----
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP--PADAYFFKL----- 261 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p--~~D~i~~~~----- 261 (360)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++..+ .||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 999887764 3579999999977544 599999851
Q ss_pred --------ccccCCh----------hHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 262 --------VFHAFGD----------EDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 262 --------~lh~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.+++.|. +-...+++++.+.|+| ||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 1122221 2236789999999999 888776
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.7e-10 Score=91.53 Aligned_cols=124 Identities=19% Similarity=0.240 Sum_probs=86.0
Q ss_pred EEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCc
Q 018116 223 TVLDL-PHAVANMPQ---------TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERG 289 (360)
Q Consensus 223 ~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG 289 (360)
+|+|. +.|++.|++ ..+++++.+|+.+ +.+ .||+|++..++|++++. .++|++++++|+| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---Ce
Confidence 47898 899987742 2479999999977 554 49999999999999865 5789999999999 99
Q ss_pred EEEEEeeecCCCCcchhhhhHhHhhhh----hhhccc----C------CcccCHHHHHHHHHHCCCceeEEEeeCCc
Q 018116 290 KVLIMDIVINEKEDKHQVTEAKLLGDT----LMSVSV----D------GKERTDEEWKTLFLDAGFTHYKITNVFGL 352 (360)
Q Consensus 290 ~lli~e~~~~~~~~~~~~~~~~~~~d~----~~~~~~----~------g~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 352 (360)
++++.|...++..... .......... ..+... . ....+.+++.++|+++||+.++......+
T Consensus 76 ~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 76 RVSILDFNKSNQSVTT-FMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred EEEEEECCCCChHHHH-HHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 9999998765432110 0000000000 000000 0 12348999999999999999988777554
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-09 Score=89.44 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=94.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--CC-CccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY--IP-PADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~--~p-~~D~i~~~~~l 263 (360)
...+|||+|||+|.++..|++.-=..+.+|+|+ +.+++.|+. .+.|+|...|+.+| .+ .||+|+-..++
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 334999999999999999998743345899999 888776652 55699999999985 23 59999876655
Q ss_pred ccC------ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHH
Q 018116 264 HAF------GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFL 337 (360)
Q Consensus 264 h~~------~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~ 337 (360)
..+ ++......+..+.+.|+| ||.++|... -.|.+|+.+.++
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSC-----------------------------N~T~dELv~~f~ 194 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSC-----------------------------NFTKDELVEEFE 194 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCC---CcEEEEEec-----------------------------CccHHHHHHHHh
Confidence 432 223335578888899999 887777321 228889999999
Q ss_pred HCCCceeEEEeeCC
Q 018116 338 DAGFTHYKITNVFG 351 (360)
Q Consensus 338 ~aGf~~~~~~~~~~ 351 (360)
.-||+.....|.|.
T Consensus 195 ~~~f~~~~tvp~pt 208 (227)
T KOG1271|consen 195 NFNFEYLSTVPTPT 208 (227)
T ss_pred cCCeEEEEeeccce
Confidence 99998888877753
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=94.33 Aligned_cols=98 Identities=13% Similarity=0.201 Sum_probs=76.2
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---C
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---P 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---p 252 (360)
.+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++ .++++++.+|..+.. .
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 3444454 56788999999999999999999865 568999999 888887763 367999999997632 2
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.||+|++.....+. .+.+.+.|+| ||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCc---CcEEEEE
Confidence 59999987665443 3456778999 9998874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.4e-09 Score=101.70 Aligned_cols=132 Identities=17% Similarity=0.331 Sum_probs=95.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CccEEEecc---
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP--PADAYFFKL--- 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p--~~D~i~~~~--- 261 (360)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++. .++++++.+|+++..+ .||+|+++-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 346899999999999999999999999999999 888887764 3589999999887543 599999832
Q ss_pred -----------ccccCCh----------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc
Q 018116 262 -----------VFHAFGD----------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV 320 (360)
Q Consensus 262 -----------~lh~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 320 (360)
++.+.|. +-..++++++.+.|+| ||.+++ |.-.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l-Eig~---------------------- 271 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL-EIGF---------------------- 271 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE-EECC----------------------
Confidence 1111111 1235678889999999 888765 3210
Q ss_pred ccCCcccCHHHHHHHHHHCCCceeEE-EeeCCceeEEEE
Q 018116 321 SVDGKERTDEEWKTLFLDAGFTHYKI-TNVFGLKSLIEV 358 (360)
Q Consensus 321 ~~~g~~~t~~e~~~ll~~aGf~~~~~-~~~~~~~~vi~~ 358 (360)
...+.+.+++++.||..+++ .++.+...++.+
T Consensus 272 ------~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 272 ------KQEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred ------chHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 03456778888899986665 445665555544
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-09 Score=90.21 Aligned_cols=100 Identities=16% Similarity=0.226 Sum_probs=77.0
Q ss_pred HHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CC-CCc
Q 018116 186 KDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ---YI-PPA 254 (360)
Q Consensus 186 ~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~---~~-p~~ 254 (360)
+..+. ..+..+|||+|||+|.++..+++..|+.+++++|. +.+++.+++ .++++++.+|+.+ .. +.+
T Consensus 33 ~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 33 ISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 34444 45678999999999999999998888999999999 888887653 3579999999865 22 246
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
|.+++.. ......+++++.+.|+| ||++++...
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~Lkp---gG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKP---GGRLVATAS 143 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCC---CeEEEEEee
Confidence 7665421 12346789999999999 999888754
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.6e-09 Score=98.53 Aligned_cols=106 Identities=12% Similarity=0.178 Sum_probs=80.2
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC--
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ---YIP-- 252 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~---~~p-- 252 (360)
+++.+. ......+||||||+|.++..+++++|+..++|+|+ +.+++.+.+ ..++.++.+|+.. .++
T Consensus 114 ~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 114 FLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 444444 34456999999999999999999999999999999 778766642 4679999999853 344
Q ss_pred CccEEEeccccccCChhH-----HHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 253 PADAYFFKLVFHAFGDED-----CLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~-----~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.+|.|++..... |+... ...+|+.++++|+| ||.+.+..-
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKP---GGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCC---CcEEEEEEE
Confidence 599998754322 33211 14789999999999 999988553
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-08 Score=88.80 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=74.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP--PADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p--~~D~i~~~~~lh 264 (360)
..+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++.--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455689999999999999988875 3458999999 888876553 3468889999876433 599999863322
Q ss_pred cCCh-------------------hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 265 AFGD-------------------EDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 265 ~~~~-------------------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
.-+. .....+++++.+.|+| ||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence 1111 1135688999999999 99998765443
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.4e-09 Score=94.38 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=71.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-CCccEEEeccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYI-PPADAYFFKLVFH 264 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~-p~~D~i~~~~~lh 264 (360)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .+++.+...+..... .+||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence 45689999999999999887764 4568999999 888887764 346777766643322 369999986443
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+....++.++.++|+| ||.+++...
T Consensus 236 ----~~l~~ll~~~~~~Lkp---gG~li~sgi 260 (288)
T TIGR00406 236 ----EVIKELYPQFSRLVKP---GGWLILSGI 260 (288)
T ss_pred ----HHHHHHHHHHHHHcCC---CcEEEEEeC
Confidence 2345789999999999 999988654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-09 Score=80.00 Aligned_cols=92 Identities=22% Similarity=0.391 Sum_probs=76.0
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC------CCCCeEEEeCCCCCCC----CCccEEEeccccccC
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP------QTENLKYIAGDMFQYI----PPADAYFFKLVFHAF 266 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~ri~~~~~D~~~~~----p~~D~i~~~~~lh~~ 266 (360)
+|+|+|||.|.++..+++ .+..+++++|. +..++.++ ...++++..+|+.+.. +++|++++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67889999999 77666554 2578999999997732 369999999999875
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.+....+++++.+.|+| ||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 44567899999999999 8888765
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-09 Score=96.29 Aligned_cols=98 Identities=20% Similarity=0.348 Sum_probs=77.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCC-CccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ---YIP-PADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~---~~p-~~D~i~~~~ 261 (360)
+++++|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ .+|++++.+|..+ ..+ .||+|++-.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4568999999999999999999999999999999 999987763 3789999999865 233 699998742
Q ss_pred cccc--CChh-HHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 262 VFHA--FGDE-DCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 262 ~lh~--~~~~-~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+. .+.. ....+++++++.|+| ||.+++.-
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin~ 177 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVNL 177 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEEc
Confidence 221 1211 125899999999999 88888753
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-09 Score=83.64 Aligned_cols=95 Identities=18% Similarity=0.261 Sum_probs=75.1
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C--CC--CccEEEecccc
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-Y--IP--PADAYFFKLVF 263 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~--~p--~~D~i~~~~~l 263 (360)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .++++++.+|+.+ . .+ .||+|+++-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999999 888876653 4789999999977 2 33 59999997666
Q ss_pred ccCC------hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 264 HAFG------DEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 264 h~~~------~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+... .+....+++++.+.|+| ||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 5432 12346789999999999 89888764
|
... |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-08 Score=85.70 Aligned_cols=148 Identities=13% Similarity=0.128 Sum_probs=95.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------------------
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------------------------- 236 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------------- 236 (360)
+..++.+...+-....+|||||-+|.++..+++.|....+.|+|+ +..++.|++
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG 125 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence 334555554456788999999999999999999999889999999 888876652
Q ss_pred ----------------CCCeEEE-------eCCCCC-CCCCccEEEeccc----cccCChhHHHHHHHHHHHhccCCCCC
Q 018116 237 ----------------TENLKYI-------AGDMFQ-YIPPADAYFFKLV----FHAFGDEDCLKILKKCREAIAGNGER 288 (360)
Q Consensus 237 ----------------~~ri~~~-------~~D~~~-~~p~~D~i~~~~~----lh~~~~~~~~~~L~~~~~~L~p~~~g 288 (360)
.+++.|. .-|+.. ..+.||+|+|-.+ =-+|.|+-.+++++++.+.|.| |
T Consensus 126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---g 202 (288)
T KOG2899|consen 126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---G 202 (288)
T ss_pred cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---C
Confidence 0122222 233433 2457999987443 2347899999999999999999 6
Q ss_pred cEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc-cCCcccCHHHHHHHHHHCCC
Q 018116 289 GKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS-VDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 289 G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g~~~t~~e~~~ll~~aGf 341 (360)
|.|++ |+- +.. .+....... ..... .......++.+.+++.+.+.
T Consensus 203 GiLvv-EPQ----pWk-sY~kaar~~--e~~~~ny~~i~lkp~~f~~~l~q~~v 248 (288)
T KOG2899|consen 203 GILVV-EPQ----PWK-SYKKAARRS--EKLAANYFKIFLKPEDFEDWLNQIVV 248 (288)
T ss_pred cEEEE-cCC----chH-HHHHHHHHH--HHhhcCccceecCHHHHHhhhhhhhh
Confidence 66555 421 111 111111111 01111 11224478899999998843
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.6e-09 Score=90.22 Aligned_cols=97 Identities=16% Similarity=0.281 Sum_probs=70.7
Q ss_pred CCCEEEEeCCCCch--HHHH--HHHHC----C-CCeEEEeec-hHHHhcCCC----------------------------
Q 018116 195 GLGSIVDVGGGNGG--FSKI--ISEAF----P-GIKCTVLDL-PHAVANMPQ---------------------------- 236 (360)
Q Consensus 195 ~~~~iLDvG~G~G~--~~~~--l~~~~----p-~~~~~~~D~-~~~~~~a~~---------------------------- 236 (360)
+..+|.-+||++|. ++++ +.+.. + ..++.+.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56899999999995 3333 33311 2 468999999 888887762
Q ss_pred ------CCCeEEEeCCCCC-CCC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 237 ------TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 237 ------~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
..+|.|..+|+.+ +.+ .||+|+|.|||.+++++...+++++++++|+| ||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 2689999999988 322 59999999999999999999999999999999 8888873
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=89.25 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=87.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCCCC-----CCccEEEecccc---
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQYI-----PPADAYFFKLVF--- 263 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~~~-----p~~D~i~~~~~l--- 263 (360)
..+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ...++++.+|+++.. ..||+|++.--.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 999988774 234688999987632 259999875321
Q ss_pred ---ccCChh------------------HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhccc
Q 018116 264 ---HAFGDE------------------DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV 322 (360)
Q Consensus 264 ---h~~~~~------------------~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 322 (360)
+..+++ -..++++.+.+.|+| ||++++.-.. +
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~~~~--~---------------------- 219 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVETSE--R---------------------- 219 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEECc--c----------------------
Confidence 111111 134788888899999 8888763210 0
Q ss_pred CCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 323 DGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 323 ~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
...++.+++++.||+..-...-
T Consensus 220 -----~~~~v~~~l~~~g~~~~~~~~~ 241 (251)
T TIGR03704 220 -----QAPLAVEAFARAGLIARVASSE 241 (251)
T ss_pred -----hHHHHHHHHHHCCCCceeeEcc
Confidence 2346677888888875544433
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-08 Score=89.73 Aligned_cols=97 Identities=13% Similarity=0.211 Sum_probs=77.7
Q ss_pred CCEEEEeCCCCch--HHHH--HHHHCC----CCeEEEeec-hHHHhcCCC------------------------------
Q 018116 196 LGSIVDVGGGNGG--FSKI--ISEAFP----GIKCTVLDL-PHAVANMPQ------------------------------ 236 (360)
Q Consensus 196 ~~~iLDvG~G~G~--~~~~--l~~~~p----~~~~~~~D~-~~~~~~a~~------------------------------ 236 (360)
..+|.-.||++|. ++++ +.+..+ ++++++.|+ +.+++.|++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999995 4433 444332 468999999 888877652
Q ss_pred -------CCCeEEEeCCCCC-CCC---CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 237 -------TENLKYIAGDMFQ-YIP---PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 237 -------~~ri~~~~~D~~~-~~p---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
..+|.|..+|+.+ ++| .||+|+|.+++.|++++...+++++++++|+| ||.|++-.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEeC
Confidence 1568999999988 333 59999999999999999999999999999999 89877633
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-08 Score=85.56 Aligned_cols=95 Identities=18% Similarity=0.297 Sum_probs=70.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CC--CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDLPHAVANMPQTENLKYIAGDMFQY---------IP--PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~---------~p--~~D~i~~~ 260 (360)
..++.+|||+|||+|.++..+++++ +..+++++|+.+.. ...+++++.+|+.+. .+ ++|+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4677899999999999999999887 56789999994332 245688998998652 22 59999985
Q ss_pred cccc---cCC------hhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 261 LVFH---AFG------DEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 261 ~~lh---~~~------~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
...| .|. .+...++|+++.+.|+| ||++++.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 4322 111 12246789999999999 9998875
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.5e-09 Score=90.45 Aligned_cols=140 Identities=22% Similarity=0.361 Sum_probs=83.4
Q ss_pred CCCEEEEeCCCC---chHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCC--eEEEeCCCCCC-----CC---C-cc
Q 018116 195 GLGSIVDVGGGN---GGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TEN--LKYIAGDMFQY-----IP---P-AD 255 (360)
Q Consensus 195 ~~~~iLDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~r--i~~~~~D~~~~-----~p---~-~D 255 (360)
+...+||||||- |..-....+..|+.+++.+|. |-++..++. .++ ..++.+|+.++ -| . .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 678999999994 344444445679999999999 888888774 344 89999999883 12 1 34
Q ss_pred -----EEEeccccccCCh-hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCH
Q 018116 256 -----AYFFKLVFHAFGD-EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTD 329 (360)
Q Consensus 256 -----~i~~~~~lh~~~~-~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~ 329 (360)
.+++..+||+++| ++...+++.++.+|.| |+.|.|.....+..... .....+.+......+..||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~p~~-----~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGAPER-----AEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTSHHH-----HHHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCCHHH-----HHHHHHHHHcCCCCceecCH
Confidence 3788999999987 7788999999999999 88988888776432211 11222222222335678999
Q ss_pred HHHHHHHHHCCCcee
Q 018116 330 EEWKTLFLDAGFTHY 344 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~ 344 (360)
+|+.++|. ||+.+
T Consensus 220 ~ei~~~f~--g~elv 232 (267)
T PF04672_consen 220 EEIAAFFD--GLELV 232 (267)
T ss_dssp HHHHHCCT--TSEE-
T ss_pred HHHHHHcC--CCccC
Confidence 99999996 78654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=85.72 Aligned_cols=129 Identities=21% Similarity=0.346 Sum_probs=90.6
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C-CCeEEEeCCCCCCCC-CccEEEecc--cccc--
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----T-ENLKYIAGDMFQYIP-PADAYFFKL--VFHA-- 265 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~ri~~~~~D~~~~~p-~~D~i~~~~--~lh~-- 265 (360)
+|||+|||+|..++.++.++|+++++++|+ +.+++.|+. . .++.++.+|.+.+.+ .||+|+++= +-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 999988764 2 566777779988765 699998842 1110
Q ss_pred -CCh------------------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcc
Q 018116 266 -FGD------------------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKE 326 (360)
Q Consensus 266 -~~~------------------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~ 326 (360)
..+ +-..+++..+.+.|+| ||.+++ +.-.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~---~g~l~l-e~g~---------------------------- 240 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP---GGVLIL-EIGL---------------------------- 240 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC---CcEEEE-EECC----------------------------
Confidence 100 1345678888888888 555544 3211
Q ss_pred cCHHHHHHHHHHCC-CceeEEEee-CCceeEEEE
Q 018116 327 RTDEEWKTLFLDAG-FTHYKITNV-FGLKSLIEV 358 (360)
Q Consensus 327 ~t~~e~~~ll~~aG-f~~~~~~~~-~~~~~vi~~ 358 (360)
-..+...++|.+.| |..+.+..- .+...++.+
T Consensus 241 ~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~ 274 (280)
T COG2890 241 TQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA 274 (280)
T ss_pred CcHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence 13567889999999 664544444 444445444
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.6e-09 Score=88.28 Aligned_cols=145 Identities=10% Similarity=0.088 Sum_probs=98.2
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCe-EEEeC---CCCC--CCCCcc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENL-KYIAG---DMFQ--YIPPAD 255 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri-~~~~~---D~~~--~~p~~D 255 (360)
..++...+ ..+..++||+|||||..+..+... --+.+|+|+ .+|+++|.+.+-. .+... +|.. +...+|
T Consensus 115 ~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 115 AEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred HHHHHhcc--CCccceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence 44455555 445899999999999999888776 347899999 8999998752111 11111 1322 233699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTL 335 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~l 335 (360)
+|....||-++..= ..++--+...|+| ||.+.+.-...+..... ++.-..-...++.-.+++
T Consensus 191 Li~AaDVl~YlG~L--e~~~~~aa~~L~~---gGlfaFSvE~l~~~~~f-------------~l~ps~RyAH~~~YVr~~ 252 (287)
T COG4976 191 LIVAADVLPYLGAL--EGLFAGAAGLLAP---GGLFAFSVETLPDDGGF-------------VLGPSQRYAHSESYVRAL 252 (287)
T ss_pred chhhhhHHHhhcch--hhHHHHHHHhcCC---CceEEEEecccCCCCCe-------------ecchhhhhccchHHHHHH
Confidence 99999999988863 4678899999999 88777654433332110 000000012267788999
Q ss_pred HHHCCCceeEEEee
Q 018116 336 FLDAGFTHYKITNV 349 (360)
Q Consensus 336 l~~aGf~~~~~~~~ 349 (360)
++..||+++++.++
T Consensus 253 l~~~Gl~~i~~~~t 266 (287)
T COG4976 253 LAASGLEVIAIEDT 266 (287)
T ss_pred HHhcCceEEEeecc
Confidence 99999999999776
|
|
| >PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-09 Score=70.29 Aligned_cols=49 Identities=55% Similarity=0.811 Sum_probs=42.9
Q ss_pred HHHHHHHHhCcchhhhhCC-CCCCHHHHHHHcC-CCCCCcccHHHHHHHHH
Q 018116 33 MSLKGAVELGIADIIHSHG-RPITLSELVSALK-IQPTKTSNLFRFMRLLV 81 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~-~~~t~~ela~~~~-~~p~~~~~l~~lL~~L~ 81 (360)
++|++|++|||||.|.+++ ++.|+.||+++++ .+|.++..+.|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 5899999999999999875 7999999999999 78777889999999985
|
It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A .... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-08 Score=86.96 Aligned_cols=90 Identities=11% Similarity=0.145 Sum_probs=70.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---CCccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---PPADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---p~~D~i~~~~~ 262 (360)
..+..+|||||||+|..+..+++.. .+++++|. +.+++.+++ ..+++++.+|..+.. ..||+|++...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 5677899999999999998777764 37999999 888876653 346999999987643 25999999876
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++++ .+.+.+.|+| ||++++.-
T Consensus 154 ~~~~--------~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 154 APEI--------PRALLEQLKE---GGILVAPV 175 (212)
T ss_pred chhh--------hHHHHHhcCC---CcEEEEEE
Confidence 6544 3456788999 89988754
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.1e-08 Score=87.30 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=84.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIPPADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~~~~l 263 (360)
..++.+|||||||+|-++++.++. ...+++++|+ |.+++.+++ .+++.+. .... ....||+|+++-.
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI~- 234 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANIL- 234 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES--
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECCC-
Confidence 356789999999999999887775 3447999999 888887764 4566553 1111 1246999987532
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCce
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
.+-...+...+.+.|+| ||.+++.-.... ..+++.+.+++ ||++
T Consensus 235 ----~~vL~~l~~~~~~~l~~---~G~lIlSGIl~~----------------------------~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 235 ----ADVLLELAPDIASLLKP---GGYLILSGILEE----------------------------QEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp ----HHHHHHHHHHCHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHT-TEEE
T ss_pred ----HHHHHHHHHHHHHhhCC---CCEEEEccccHH----------------------------HHHHHHHHHHC-CCEE
Confidence 33456788889999999 888888544321 24566777877 9998
Q ss_pred eEEEeeCCceeEE
Q 018116 344 YKITNVFGLKSLI 356 (360)
Q Consensus 344 ~~~~~~~~~~~vi 356 (360)
++.....+=.+++
T Consensus 279 ~~~~~~~~W~~l~ 291 (295)
T PF06325_consen 279 VEEREEGEWVALV 291 (295)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEEECCEEEEE
Confidence 8887765544443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-07 Score=79.13 Aligned_cols=159 Identities=13% Similarity=0.163 Sum_probs=92.0
Q ss_pred hHHhhcCCcHHHHHHHH----hhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHh
Q 018116 157 WDYMNQNPGLSQRFNQA----MISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVA 232 (360)
Q Consensus 157 ~~~~~~~~~~~~~~~~~----m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 232 (360)
++.+.++|+....|.+. +.....-..+.+++.+. ..+....|.|.|||.+.++..+.+ ..++.-+|+-..
T Consensus 31 ~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-- 104 (219)
T PF05148_consen 31 LKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-- 104 (219)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S--
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC--
Confidence 44555666655544443 33332223455555554 123457999999999998865532 356888887211
Q ss_pred cCCCCCCeEEEeCCCCC-CCC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhh
Q 018116 233 NMPQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTE 309 (360)
Q Consensus 233 ~a~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~ 309 (360)
.+ .++..|+.. |.+ ..|+++++..|..-+ ...+|+++.|.|+| ||.|.|.|...
T Consensus 105 ----n~--~Vtacdia~vPL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~---~G~L~IAEV~S----------- 161 (219)
T PF05148_consen 105 ----NP--RVTACDIANVPLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKP---GGILKIAEVKS----------- 161 (219)
T ss_dssp ----ST--TEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEE---EEEEEEEEEGG-----------
T ss_pred ----CC--CEEEecCccCcCCCCceeEEEEEhhhhCCC---cHHHHHHHHheecc---CcEEEEEEecc-----------
Confidence 22 367788865 665 499999988886432 46789999999999 99999988642
Q ss_pred HhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEe
Q 018116 310 AKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359 (360)
Q Consensus 310 ~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
+.-..+++.+.+++.||+....-.....+.+++.+
T Consensus 162 ---------------Rf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~ 196 (219)
T PF05148_consen 162 ---------------RFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFK 196 (219)
T ss_dssp ---------------G-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEE
T ss_pred ---------------cCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEE
Confidence 12256788899999999988754445556666654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=84.72 Aligned_cols=97 Identities=14% Similarity=0.223 Sum_probs=81.7
Q ss_pred CCCEEEEeCCCCch----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCC----------------------------
Q 018116 195 GLGSIVDVGGGNGG----FSKIISEAFP-----GIKCTVLDL-PHAVANMPQ---------------------------- 236 (360)
Q Consensus 195 ~~~~iLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~---------------------------- 236 (360)
+.-+|.-+||++|. +++.+.+.+| .+++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47899999999994 5555666775 578999999 889887762
Q ss_pred -------CCCeEEEeCCCCCCC--C-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 237 -------TENLKYIAGDMFQYI--P-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 237 -------~~ri~~~~~D~~~~~--p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
...|.|..+|..++. + +||+|+|.|||-+++.+...+++++.+..|+| ||.|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEc
Confidence 246999999998843 3 59999999999999999999999999999999 8988873
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.80 E-value=5e-08 Score=90.75 Aligned_cols=98 Identities=18% Similarity=0.126 Sum_probs=73.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
..++.+|||+|||+|.++...+.. +.+++++|+ +.+++.++. ...+.+..+|+.+ +.+ .||+|++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 466789999999999998886654 789999999 888876553 2348899999977 443 5999998522
Q ss_pred cc-------cCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 263 FH-------AFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 263 lh-------~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.. +...+...++|+.+++.|+| ||++++.-
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~ 294 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAV 294 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEE
Confidence 11 11123346899999999999 99988753
|
This family is found exclusively in the Archaea. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.1e-08 Score=85.84 Aligned_cols=122 Identities=15% Similarity=0.235 Sum_probs=86.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeE----EEeCCCCC-CC-CCccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLK----YIAGDMFQ-YI-PPADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~----~~~~D~~~-~~-p~~D~i~~~~~ 262 (360)
..++.++||+|||+|-++++.++. -..+++++|+ |.+++.+++ .+.++ ....+..+ +. ..||+|+++ +
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVAN-I 237 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVAN-I 237 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEeh-h
Confidence 468899999999999999988875 3446999999 988888775 33443 22222222 22 259999864 3
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCc
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 342 (360)
| .+ -.+++...+++.++| ||++++.-.... -.+...+.++++||.
T Consensus 238 L---A~-vl~~La~~~~~~lkp---gg~lIlSGIl~~----------------------------q~~~V~~a~~~~gf~ 282 (300)
T COG2264 238 L---AE-VLVELAPDIKRLLKP---GGRLILSGILED----------------------------QAESVAEAYEQAGFE 282 (300)
T ss_pred h---HH-HHHHHHHHHHHHcCC---CceEEEEeehHh----------------------------HHHHHHHHHHhCCCe
Confidence 3 22 356888999999999 899888542210 245667888899999
Q ss_pred eeEEEeeCC
Q 018116 343 HYKITNVFG 351 (360)
Q Consensus 343 ~~~~~~~~~ 351 (360)
++++.....
T Consensus 283 v~~~~~~~e 291 (300)
T COG2264 283 VVEVLEREE 291 (300)
T ss_pred EeEEEecCC
Confidence 988877643
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-08 Score=90.67 Aligned_cols=98 Identities=15% Similarity=0.248 Sum_probs=74.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCC----CCCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQY----IPPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~----~p~~D~i 257 (360)
+..++||+||||.|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|...- ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4578999999999999999997655668999999 988887763 46899999998662 2259999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 018116 258 FFKLVFHAFGDED--CLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 258 ~~~~~lh~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
++-..-+..+... ...+++.+++.|+| ||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9854333222221 25788999999999 8877653
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.5e-08 Score=83.87 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=93.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC-CccEEEeccccccCChhHHH
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIP-PADAYFFKLVFHAFGDEDCL 272 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p-~~D~i~~~~~lh~~~~~~~~ 272 (360)
...++||||+|.|..+..++..|.. +.+.+. +.|....++ ..++++..|-....+ .||+|.|.|+|-...++ .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--L 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--H
Confidence 4578999999999999999998874 777888 777666653 344444433333223 69999999999876665 5
Q ss_pred HHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCc--ccCHHHHHHHHHHCCCceeEEEeeC
Q 018116 273 KILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGK--ERTDEEWKTLFLDAGFTHYKITNVF 350 (360)
Q Consensus 273 ~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~--~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
.+|+.++++|+| +|++++.-..+-.+.-+. -.......+-.+ ...|. +-..+.+.+.|+.+||++++....|
T Consensus 169 ~LL~~i~~~l~p---~G~lilAvVlP~~pyVE~-~~g~~~~P~e~l--~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 169 TLLRDIRRALKP---NGRLILAVVLPFRPYVEF-GGGKSNRPSELL--PVKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHhCC---CCEEEEEEEecccccEEc-CCCCCCCchhhc--CCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 889999999999 888887654432211110 000000000000 01121 1123344588999999999987775
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-08 Score=85.04 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCC--CCC----C-C--C-CccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGD--MFQ----Y-I--P-PADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D--~~~----~-~--p-~~D~i~~~~~l 263 (360)
....++|||||+|..++.++..|. +++++|. +.|++.+++..++.+...- |-+ + . + +.|+|++..++
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 345899999999988888888765 6999999 9999999875555544321 111 1 1 2 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
|+++-+ ++.+.++++||+. ||.+.+...
T Consensus 111 HWFdle---~fy~~~~rvLRk~--Gg~iavW~Y 138 (261)
T KOG3010|consen 111 HWFDLE---RFYKEAYRVLRKD--GGLIAVWNY 138 (261)
T ss_pred HhhchH---HHHHHHHHHcCCC--CCEEEEEEc
Confidence 988865 6799999999981 555555443
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.3e-08 Score=88.18 Aligned_cols=92 Identities=15% Similarity=0.276 Sum_probs=70.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---CCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---PPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---p~~D~i~~~~ 261 (360)
..+..+|||||||+|.++..+++..+. .+++++|. +.+++.+++ .+++.++.+|..+.. ..||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 556789999999999999999998763 57999999 888876653 457999999986632 3599999876
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+++.+ ..+.+.|+| ||++++..
T Consensus 158 g~~~ip--------~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 158 GVDEVP--------ETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred chHHhH--------HHHHHhcCC---CCEEEEEe
Confidence 554332 345667999 99988744
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.5e-08 Score=80.71 Aligned_cols=88 Identities=16% Similarity=0.341 Sum_probs=64.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--Ccc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~D 255 (360)
.+++.++ ..+..+|||||||+|.++..++++ ..+++++|. +.+++.+++ .++++++.+|+.+ +.+ .+|
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 3445555 566789999999999999999988 578999999 888877653 4689999999987 444 389
Q ss_pred EEEeccccccCChhHHHHHHH
Q 018116 256 AYFFKLVFHAFGDEDCLKILK 276 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~ 276 (360)
.|+++ ..++.+.+...++++
T Consensus 80 ~vi~n-~Py~~~~~~i~~~l~ 99 (169)
T smart00650 80 KVVGN-LPYNISTPILFKLLE 99 (169)
T ss_pred EEEEC-CCcccHHHHHHHHHh
Confidence 88765 444455444444443
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=86.16 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=72.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CC-C-CccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---YI-P-PADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~~-p-~~D~i 257 (360)
+..++||+||||.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|... .. + .||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999986533468999999 878876653 4699999999754 23 2 59999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhccCCCCCcEEEE
Q 018116 258 FFKLVFHAFGDE--DCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 258 ~~~~~lh~~~~~--~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
++-..-.+.+.. -...+++.++++|+| ||.+++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 974332222211 134689999999999 887754
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-07 Score=80.32 Aligned_cols=105 Identities=14% Similarity=0.226 Sum_probs=86.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHH-HCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-CC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISE-AFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-IP 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-~p 252 (360)
..++...+ ..++.+|+|.|.|+|.++..|+. ..|.-+++.+|. +...+.|.+ .+++.+..+|+.+. .+
T Consensus 84 ~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 84 GYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 34556666 88999999999999999999997 457789999999 887777764 57799999999873 33
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
.||.|++ +++++. ..|.+++++|+| ||.+.+.-++.+
T Consensus 162 ~~vDav~L-----Dmp~PW--~~le~~~~~Lkp---gg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DLPDPW--NVLEHVSDALKP---GGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cCCChH--HHHHHHHHHhCC---CcEEEEEcCCHH
Confidence 6999886 567765 679999999999 999998776653
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-07 Score=78.83 Aligned_cols=98 Identities=12% Similarity=0.170 Sum_probs=77.0
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---C
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP---P 253 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p---~ 253 (360)
.+++.+. +++..+|||||||+|+.+.-+++.-. +++.+++ +...+.|++ ..+|.++++|-..-+| .
T Consensus 63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 3455555 78899999999999999998888743 8999999 888888764 4569999999988544 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
||.|+.....-..|+ .+.+-|++ ||++++-..
T Consensus 139 yD~I~Vtaaa~~vP~--------~Ll~QL~~---gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPE--------ALLDQLKP---GGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCH--------HHHHhccc---CCEEEEEEc
Confidence 999998877665554 24445799 999998655
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.5e-07 Score=79.99 Aligned_cols=96 Identities=14% Similarity=0.162 Sum_probs=74.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---------CCCc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---------IPPA 254 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---------~p~~ 254 (360)
..+.++|||||||+|.-+..++...+ +.+++.+|. ++..+.|++ .++|+++.+|..+. .+.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45688999999999999999998865 679999999 888777663 57899999998762 1359
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
|+|++- ...+.-..++..+.+.|+| ||.|++-+.
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~---GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKV---GGIIAFDNT 179 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCC---CeEEEEEcC
Confidence 999873 2334456789999999999 776555443
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=87.45 Aligned_cols=98 Identities=9% Similarity=0.104 Sum_probs=73.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCC---C-CCcc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------------TENLKYIAGDMFQY---I-PPAD 255 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~ri~~~~~D~~~~---~-p~~D 255 (360)
..+++||+||||.|..+..+++..+..+++++|+ +.+++.|+. .+|++++.+|..+- . ..||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4578999999999999998887655679999999 998887662 57999999998762 2 2599
Q ss_pred EEEecccc---ccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 256 AYFFKLVF---HAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 256 ~i~~~~~l---h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+|++-..- .....--...+++.+++.|+| ||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 99985310 001111225689999999999 8887664
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=85.98 Aligned_cols=98 Identities=14% Similarity=0.168 Sum_probs=74.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---C-CCCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---Y-IPPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~-~p~~D~i~ 258 (360)
+.+.+||+||||+|.++..+++..+..+++++|+ +.+++.+++ .++++++.+|..+ . ...||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999988766778999999 888776653 3689999988765 1 23699999
Q ss_pred eccccccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 018116 259 FKLVFHAFGDED--CLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 259 ~~~~lh~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+...-..-+... ...+++.+++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 865432222222 35789999999999 8888775
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.4e-07 Score=95.51 Aligned_cols=65 Identities=25% Similarity=0.305 Sum_probs=55.2
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------------CCCeEEEeCCCCCCCC
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------------------TENLKYIAGDMFQYIP 252 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~ri~~~~~D~~~~~p 252 (360)
..+|||+|||+|..++.+++.+|..+++++|+ +.+++.|+. .+|++|+.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999999 888876632 1479999999988543
Q ss_pred ----CccEEEec
Q 018116 253 ----PADAYFFK 260 (360)
Q Consensus 253 ----~~D~i~~~ 260 (360)
.||+|+++
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 49999874
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.64 E-value=8e-08 Score=82.88 Aligned_cols=100 Identities=13% Similarity=0.232 Sum_probs=72.9
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP-- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p-- 252 (360)
..+++.+. +.++.+|||||||+|+.+..+++.. +..+++.+|. +...+.|++ ..+|.++.+|.....+
T Consensus 62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 34556566 7788999999999999999988875 3457999999 888887764 5689999999877443
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.||.|++.......|. .+.+.|++ ||+|++--
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~pi 172 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAPI 172 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEEE
Confidence 5999999887764443 24555899 99998743
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-06 Score=75.55 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=105.0
Q ss_pred hhHHhhcCCcHHHHHHHHhhhCc----chhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHH
Q 018116 156 YWDYMNQNPGLSQRFNQAMISDS----EMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAV 231 (360)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~m~~~~----~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 231 (360)
-+..+.++|.....|....+... .-..+.+++.+. ..+....|.|+|||-+.++. . -..++.-+|+-
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~---~--~~~kV~SfDL~--- 208 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIAS---S--ERHKVHSFDLV--- 208 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhh---c--cccceeeeeee---
Confidence 34455566666555554443322 112344555554 13467899999999998775 1 13356777763
Q ss_pred hcCCCCCCeEEEeCCCCC-CCC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhh
Q 018116 232 ANMPQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVT 308 (360)
Q Consensus 232 ~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~ 308 (360)
..+-.++..|+.. |.+ +.|+++++..|.. . +...++++++|+|+| ||.++|.|.-.
T Consensus 209 -----a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg--t-n~~df~kEa~RiLk~---gG~l~IAEv~S---------- 267 (325)
T KOG3045|consen 209 -----AVNERVIACDMRNVPLEDESVDVAVFCLSLMG--T-NLADFIKEANRILKP---GGLLYIAEVKS---------- 267 (325)
T ss_pred -----cCCCceeeccccCCcCccCcccEEEeeHhhhc--c-cHHHHHHHHHHHhcc---CceEEEEehhh----------
Confidence 2233456788877 554 5999988777753 2 245789999999999 99999987532
Q ss_pred hHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 309 EAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 309 ~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
+..+..++.+.+...||.+........++.+++.+|
T Consensus 268 ----------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 268 ----------------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred ----------------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 222445688899999998777666666777777654
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.3e-07 Score=89.41 Aligned_cols=97 Identities=15% Similarity=0.255 Sum_probs=73.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCC---CC-CCc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ-------------TENLKYIAGDMFQ---YI-PPA 254 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~ri~~~~~D~~~---~~-p~~ 254 (360)
++.++|||||||+|..+..+++ +|. .+++++|+ +++++.+++ .+|++++.+|..+ .. ..|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4578999999999999999986 465 79999999 999987764 3689999999876 22 369
Q ss_pred cEEEeccccccCChh---HHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 255 DAYFFKLVFHAFGDE---DCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 255 D~i~~~~~lh~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
|+|++...-...+.. -..++++++++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 999986432211111 123588999999999 8887764
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.2e-07 Score=78.84 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCchHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-CccEEEeccccccCCh
Q 018116 196 LGSIVDVGGGNGGFSKIISEAF---PGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP-PADAYFFKLVFHAFGD 268 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~~~~ 268 (360)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.++. ..++.++.+|+.. +.. .||+|+++=-.+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 4678999999 999998875 4678999999976 333 5999998655442221
Q ss_pred ----------hHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 269 ----------EDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 269 ----------~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.-..++++++.+++++ |.+++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ----GTFII 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC----CEEEe
Confidence 1234588999997776 66633
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.6e-07 Score=85.29 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=72.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------CCCeEEEeCCCCCC-------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------------TENLKYIAGDMFQY------- 250 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~ri~~~~~D~~~~------- 250 (360)
+..+|||+|||-|+-+..-... .-..++|+|+ ...++.|++ .-...|+.+|.+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 6789999999999877666665 3447999999 777776652 12456788888752
Q ss_pred CC--CccEEEeccccccC--ChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 251 IP--PADAYFFKLVFHAF--GDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 251 ~p--~~D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
.+ .||+|-+...+|+. +.+.+..+|+++.+.|+| ||.+|..-+-
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~~d 188 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTTPD 188 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEE-
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEecC
Confidence 12 59999999999994 566778899999999999 8888876553
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.9e-07 Score=70.35 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=71.9
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCch-HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC----CccEEE
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGG-FSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIP----PADAYF 258 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p----~~D~i~ 258 (360)
+.+.++ .....++||||||+|. ++..|.+. +..++++|. +..++.++ ...++++.+|++++-+ ++|+|+
T Consensus 8 l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~-~~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 8 IAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAK-KLGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHH-HhCCeEEECcCCCCCHHHHhcCCEEE
Confidence 344444 3345789999999996 77777765 789999999 88888776 4457999999999533 699999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+.+ |+.+.+.-+.++++... .-++|.-..
T Consensus 83 sir-----pp~el~~~~~~la~~~~-----~~~~i~~l~ 111 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKIN-----VPLIIKPLS 111 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHcC-----CCEEEEcCC
Confidence 876 56666777777776653 456654443
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-07 Score=79.12 Aligned_cols=92 Identities=20% Similarity=0.373 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----CC--CccEEEeccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY----IP--PADAYFFKLV 262 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~----~p--~~D~i~~~~~ 262 (360)
...+||||||.|.++..+++.+|+..++|+|+ ...+..+.. ..++.++++|+..- ++ ..|-|++.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~-- 95 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN-- 95 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE--
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe--
Confidence 34899999999999999999999999999999 666655442 68999999998771 23 47776653
Q ss_pred cccCChhH-----------HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 263 FHAFGDED-----------CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 263 lh~~~~~~-----------~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+||+. ...+|+.+++.|+| ||.|.+..
T Consensus 96 ---FPDPWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T 133 (195)
T PF02390_consen 96 ---FPDPWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT 133 (195)
T ss_dssp ---S-----SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ---CCCCCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence 34432 24689999999999 99887754
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.8e-07 Score=86.54 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=77.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC---C-C-CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQY---I-P-PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~---~-p-~~D~i~~~~ 261 (360)
..++.+|||+|||+|..+..+++..++.+++++|. +.+++.+++ .-+++++.+|+.+. . + .||.|++.-
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45678999999999999999999988789999999 888877753 23578999998762 1 2 499998521
Q ss_pred ------ccc-------cCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 262 ------VFH-------AFGDED-------CLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 262 ------~lh-------~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
++. ....++ ..++|+++.+.|+| ||++++......
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~~ 376 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSIL 376 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 111 112221 24789999999999 999988775443
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.53 E-value=3e-07 Score=77.28 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=68.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEeCCCCCCC------C-CccE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ---------TENLKYIAGDMFQYI------P-PADA 256 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~ri~~~~~D~~~~~------p-~~D~ 256 (360)
...+.+|||+|||+|..++.++..++..+++..|.+++++..+. ..++.+...|..++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45678999999999999999998878889999999556654331 477888888875521 2 5999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 257 YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
|+.+.++++ ++....+++.+.+.|+| +|.+++....+
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence 999999984 56678899999999999 77777776655
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.8e-07 Score=85.32 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=78.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-C----CCccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-I----PPADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-~----p~~D~i~~ 259 (360)
..++.+|||+|||+|..+..+++..+..+++++|. +.+++.+++ ..++.+..+|.... . ..||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 45678999999999999999999888789999999 888876653 12344467776542 1 25999986
Q ss_pred ------ccccccCCh-------hH-------HHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 260 ------KLVFHAFGD-------ED-------CLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 260 ------~~~lh~~~~-------~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
..++++.++ ++ ..++|+++.+.|+| ||+|+..+......
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~~ 374 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLPE 374 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCChh
Confidence 235554443 11 35799999999999 99999888766543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-07 Score=79.46 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCC--eEEEeCCCCC--CCC--CccEEEeccccccC-
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTEN--LKYIAGDMFQ--YIP--PADAYFFKLVFHAF- 266 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~r--i~~~~~D~~~--~~p--~~D~i~~~~~lh~~- 266 (360)
...-|||||||+|..+..+... +..++|+|+ |+|++.|.+ .. =.++.+|+-+ |++ .||.+|+...+.++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 3778999999999888777664 688999999 999999874 22 3577888877 333 49999887666433
Q ss_pred --------ChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 267 --------GDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 267 --------~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
|......++..++.+|++ |++-++
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~ 158 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKR---GARAVL 158 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhcc---CceeEE
Confidence 344456778889999999 787665
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1e-06 Score=77.68 Aligned_cols=126 Identities=14% Similarity=0.231 Sum_probs=89.7
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC--
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YI-- 251 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~-- 251 (360)
.++..++ ..++.+|||.|.|+|.++..|++. .|.-++..+|. ++..+.|++ .++|.+...|+.+ .+
T Consensus 31 ~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 4555566 789999999999999999999975 58889999999 777777664 5789999999965 23
Q ss_pred ---CCccEEEeccccccCChhHHHHHHHHHHHhc-cCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCccc
Q 018116 252 ---PPADAYFFKLVFHAFGDEDCLKILKKCREAI-AGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKER 327 (360)
Q Consensus 252 ---p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L-~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~ 327 (360)
..+|.|++ ++|++. ..+..+.++| +| ||++.++-++...
T Consensus 109 ~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~---gG~i~~fsP~ieQ--------------------------- 151 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDPW--EAIPHAKRALKKP---GGRICCFSPCIEQ--------------------------- 151 (247)
T ss_dssp T-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EE---EEEEEEEESSHHH---------------------------
T ss_pred cccCcccEEEE-----eCCCHH--HHHHHHHHHHhcC---CceEEEECCCHHH---------------------------
Confidence 24899876 567765 4599999999 88 9999887655321
Q ss_pred CHHHHHHHHHHCCCceeEEEee
Q 018116 328 TDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.....+.|++.||..+++..+
T Consensus 152 -v~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 152 -VQKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp -HHHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHHHHCCCeeeEEEEE
Confidence 123345667788887776554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=85.23 Aligned_cols=105 Identities=18% Similarity=0.282 Sum_probs=77.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CccEEEec--
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP--PADAYFFK-- 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p--~~D~i~~~-- 260 (360)
..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.+++ ..+|+++.+|+.+..+ .||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 34668999999999999999888764 468999999 888877653 3468999999876322 59999861
Q ss_pred ----ccc-------ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 261 ----LVF-------HAFGDED-------CLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 261 ----~~l-------h~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
.++ .+++.++ -.++|+++.+.|+| ||+++........
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~~ 382 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIEP 382 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence 111 1233322 23689999999999 9998887765543
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-06 Score=84.67 Aligned_cols=103 Identities=21% Similarity=0.252 Sum_probs=76.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CC-CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---IP-PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~p-~~D~i~~~ 260 (360)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ ..+++++.+|+.+. ++ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4567899999999999999999986 6789999999 888776653 24599999998762 33 59999873
Q ss_pred c------cccc-------CChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 261 L------VFHA-------FGDED-------CLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 261 ~------~lh~-------~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
- ++.+ ++..+ ...+|+++.+.|+| ||+|+......
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCC
Confidence 2 1111 11112 24689999999999 99988655443
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-06 Score=78.38 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=91.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeC----CCCCCC--C--CccEE
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------TENLKYIAG----DMFQYI--P--PADAY 257 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~----D~~~~~--p--~~D~i 257 (360)
...++||||||+|.....++.+.++++++++|+ +.+++.|+. .++|+++.. +++... + .||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 467999999999999888998989999999999 888887764 357877642 333321 2 59999
Q ss_pred EeccccccCChhH---HHHHHHHHH----------------HhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh
Q 018116 258 FFKLVFHAFGDED---CLKILKKCR----------------EAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM 318 (360)
Q Consensus 258 ~~~~~lh~~~~~~---~~~~L~~~~----------------~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~ 318 (360)
+++=-+|.-..+. ...-.++++ +.+.+ ||.+-++..+..+.. .......+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS~------~~~~~~gw-- 262 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEESK------AFAKQVLW-- 262 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHHH------HHHhhCcE--
Confidence 9987766433321 112233332 22233 566554444433320 00011111
Q ss_pred hcccCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 319 SVSVDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 319 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
...+-|+.-+...+.+.|++.|.+.+.+..+
T Consensus 263 ftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 263 FTSLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred EEEEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 1112356679999999999999987777776
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.4e-07 Score=78.68 Aligned_cols=104 Identities=18% Similarity=0.259 Sum_probs=77.7
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CC----CeEEEeCCCCCC
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------TE----NLKYIAGDMFQY 250 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~----ri~~~~~D~~~~ 250 (360)
.++..|- ++...++|+|||-|+-++.--++- --.++++|+ .-.++.++. .. .+.|+++|.+..
T Consensus 109 ~LI~~y~---~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 109 VLINLYT---KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred HHHHHHh---ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 3455553 677889999999999877766551 236999999 555777763 12 368889988761
Q ss_pred -----C----CCccEEEecccccc-C-ChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 251 -----I----PPADAYFFKLVFHA-F-GDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 251 -----~----p~~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
. |.||+|-+.+++|+ | +.+.+..+|+++++.|+| ||.+|-.
T Consensus 185 ~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FIgT 236 (389)
T KOG1975|consen 185 RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFIGT 236 (389)
T ss_pred HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEEEe
Confidence 2 34999999999998 4 456788899999999999 8877653
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-06 Score=82.72 Aligned_cols=103 Identities=16% Similarity=0.167 Sum_probs=78.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C----C--CCccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y----I--PPADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~----~--p~~D~i 257 (360)
..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.+++ ..+|+++.+|..+ + . ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 45678999999999999999998864 568999999 888877653 3569999999865 2 1 159999
Q ss_pred Eec------cccccCCh-------hH-------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 258 FFK------LVFHAFGD-------ED-------CLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 258 ~~~------~~lh~~~~-------~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
++- .++++.++ ++ -.++|+++.+.|+| ||+|+..+...
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 972 34444333 11 25789999999999 99988776544
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=77.56 Aligned_cols=81 Identities=15% Similarity=0.308 Sum_probs=62.2
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCCccEE
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIPPADAY 257 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p~~D~i 257 (360)
.+++..+ ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +++.+|.|
T Consensus 20 ~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~V 95 (258)
T PRK14896 20 RIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKV 95 (258)
T ss_pred HHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEE
Confidence 3444444 556789999999999999999998 458999999 888876653 4689999999987 66778988
Q ss_pred EeccccccCChh
Q 018116 258 FFKLVFHAFGDE 269 (360)
Q Consensus 258 ~~~~~lh~~~~~ 269 (360)
+++-. ++.+.+
T Consensus 96 v~NlP-y~i~s~ 106 (258)
T PRK14896 96 VSNLP-YQISSP 106 (258)
T ss_pred EEcCC-cccCcH
Confidence 77544 444433
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.1e-06 Score=76.14 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=75.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCCccEEEec-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IPPADAYFFK- 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p~~D~i~~~- 260 (360)
..++.+|||+|||+|..+..+++..+ ...++++|. +..++.+++ ..+++++..|... + .+.||.|++-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 35678999999999999999998775 458999999 888876653 3568999998754 2 2359999862
Q ss_pred -----cccc-------cCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 261 -----LVFH-------AFGDED-------CLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 261 -----~~lh-------~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
.++. .+++++ ..++|+++.+.|+| ||+|+.......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 1221 123222 24699999999999 898876655443
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-06 Score=75.35 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=66.1
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC---------------CCCCeEEEeCCC
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP---------------QTENLKYIAGDM 247 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---------------~~~ri~~~~~D~ 247 (360)
.+++.+. +.+...++|+|||.|......+..++.-+.+|+++ +...+.+. ...++++..+|+
T Consensus 33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 3455555 67788999999999999988887776666999999 66554332 156789999999
Q ss_pred CC-C-----CCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 248 FQ-Y-----IPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 248 ~~-~-----~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
.+ + +.++|+|++++.. |+++ ...-|.+....|++ |.+++-.....+.
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~---G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKP---GARIISTKPFCPR 163 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-T---T-EEEESS-SS-T
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCC---CCEEEECCCcCCC
Confidence 87 2 2479999999886 3554 44555777778898 7777665555444
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.2e-07 Score=77.62 Aligned_cols=97 Identities=21% Similarity=0.336 Sum_probs=74.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---------CCCc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---------IPPA 254 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---------~p~~ 254 (360)
..+.++||+||+++|.-+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+. ...|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 35678999999999999999999987 689999999 877777653 57999999998651 1259
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
|+|++-. ...+-...+..+.+.|+| |.++++|.+.
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~----ggvii~DN~l 157 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRP----GGVIIADNVL 157 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEE----EEEEEEETTT
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccC----CeEEEEcccc
Confidence 9998743 444566789999999999 5566666544
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.8e-06 Score=67.31 Aligned_cols=111 Identities=18% Similarity=0.174 Sum_probs=89.7
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-C-----C-
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-Y-----I- 251 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~-----~- 251 (360)
++.++...+ ...+.-||++|.|+|.+..+++++- +....+.++. ++-.....+ .+.++++.||.+. . .
T Consensus 37 A~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 37 ARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred HHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence 344455555 5678899999999999999988763 5667888988 776666554 6777899999876 2 2
Q ss_pred -CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 252 -PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 252 -p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+.||.|++.--+-.+|-....++|+.+...|++ ||.++.+..-
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 249999999999899999999999999999999 8998887765
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.1e-06 Score=76.92 Aligned_cols=83 Identities=14% Similarity=0.241 Sum_probs=60.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCCcc-
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIPPAD- 255 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p~~D- 255 (360)
..+++..+ ..+..+|||||||+|.++..++++.+ +++++|. +.+++.++. .++++++.+|+.+ +.+.+|
T Consensus 19 ~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 19 QKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 34444444 56678999999999999999999975 5999999 888776653 4789999999987 455566
Q ss_pred -EEEeccccccCChh
Q 018116 256 -AYFFKLVFHAFGDE 269 (360)
Q Consensus 256 -~i~~~~~lh~~~~~ 269 (360)
.+++++.-++++.+
T Consensus 95 ~~~vvsNlPy~i~~~ 109 (253)
T TIGR00755 95 QLKVVSNLPYNISSP 109 (253)
T ss_pred cceEEEcCChhhHHH
Confidence 34444554555544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.1e-06 Score=81.42 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=76.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IP-PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p-~~D~i~~~ 260 (360)
..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..+++++.+|... + .+ .||.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4567899999999999999999886 4679999999 888877653 3468999999865 2 12 59999861
Q ss_pred ------cccc-------cCChh-------HHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 261 ------LVFH-------AFGDE-------DCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 261 ------~~lh-------~~~~~-------~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
.++. +++.+ .-.++|.++.+.|+| ||.++........
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~~ 371 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVTK 371 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCCh
Confidence 1222 12211 125789999999999 8887766655443
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=78.37 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=59.9
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCCc--cE
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIPPA--DA 256 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p~~--D~ 256 (360)
.+++.+. ..+..+|||||||+|.++..++++.+ +++++|. +.+++.+++ .++++++.+|+.+ +.+.+ |.
T Consensus 33 ~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 33 KIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence 3444444 56678999999999999999999965 8999999 888887764 3689999999987 44443 55
Q ss_pred EEeccccccCChh
Q 018116 257 YFFKLVFHAFGDE 269 (360)
Q Consensus 257 i~~~~~lh~~~~~ 269 (360)
|+. +.-++.+.+
T Consensus 109 vv~-NlPY~iss~ 120 (272)
T PRK00274 109 VVA-NLPYNITTP 120 (272)
T ss_pred EEE-eCCccchHH
Confidence 554 444444443
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.7e-06 Score=73.27 Aligned_cols=100 Identities=16% Similarity=0.249 Sum_probs=79.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEe-CCCCC--C---CCCccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIA-GDMFQ--Y---IPPADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~-~D~~~--~---~p~~D~i 257 (360)
..+.++||+||.+.|.-++.++...| +.+.+.+|+ ++..+.|++ .++|+++. +|..+ . .++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56889999999999999999999999 889999999 888888774 67788888 57765 2 2469999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
++- -...+-.+.|..+.+.|+| |.++++|.+....
T Consensus 137 FID-----adK~~yp~~le~~~~lLr~----GGliv~DNvl~~G 171 (219)
T COG4122 137 FID-----ADKADYPEYLERALPLLRP----GGLIVADNVLFGG 171 (219)
T ss_pred EEe-----CChhhCHHHHHHHHHHhCC----CcEEEEeecccCC
Confidence 863 2334456789999999999 5566667666553
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.3e-06 Score=75.65 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=75.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------CCc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I------PPA 254 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~------p~~ 254 (360)
..+.++|||||+++|..+..++...| +.+++.+|. ++..+.|++ .++|+++.+|..+. . +.|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45689999999999999999999876 668999999 877776653 57999999998662 1 359
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
|+|++- -+..+-...+..+.+.|+| ||.|++ |.+.
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~~---GGvIV~-DNvL 230 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVRV---GGVIVM-DNVL 230 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCC---CcEEEE-ecCc
Confidence 999863 2345567889999999999 666555 5443
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.2e-06 Score=69.10 Aligned_cols=121 Identities=16% Similarity=0.180 Sum_probs=89.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-CCC-----CccEEEeccccccCChh
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQ-YIP-----PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~-~~p-----~~D~i~~~~~lh~~~~~ 269 (360)
..++|||||=+....+. .++-..++-+|+.+.- -.+...||++ |.| .||+|.++.||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~~--------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQH--------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCCC--------CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999986664432 3456679999983311 2246678887 655 49999999999999864
Q ss_pred -HHHHHHHHHHHhccCCCCCcE-----EEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCce
Q 018116 270 -DCLKILKKCREAIAGNGERGK-----VLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 270 -~~~~~L~~~~~~L~p~~~gG~-----lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
+.-++|+++++.|+| +|. |+|+-+... ..|.+..+.+.|.++++.-||..
T Consensus 121 ~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~~C---------------------v~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKP---PGLSLFPSLFLVLPLPC---------------------VTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHhCC---CCccCcceEEEEeCchH---------------------hhcccccCHHHHHHHHHhCCcEE
Confidence 566899999999999 787 766543211 12466678999999999999998
Q ss_pred eEEEeeCC
Q 018116 344 YKITNVFG 351 (360)
Q Consensus 344 ~~~~~~~~ 351 (360)
++.+...-
T Consensus 177 ~~~~~~~K 184 (219)
T PF11968_consen 177 VKYKKSKK 184 (219)
T ss_pred EEEEecCe
Confidence 88765543
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.1e-06 Score=80.51 Aligned_cols=98 Identities=8% Similarity=0.092 Sum_probs=68.1
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC-----
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY----- 250 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~----- 250 (360)
..+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .++++|+.+|+.+.
T Consensus 287 ~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 287 ARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 33344443 4566899999999999999999885 68999999 999887764 35799999998652
Q ss_pred C--CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 251 I--PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 251 ~--p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
. ..||+|++.- |......+++.+.+ ++| ++.++|
T Consensus 363 ~~~~~fD~Vi~dP-----Pr~g~~~~~~~l~~-~~~---~~ivyv 398 (443)
T PRK13168 363 WALGGFDKVLLDP-----PRAGAAEVMQALAK-LGP---KRIVYV 398 (443)
T ss_pred hhcCCCCEEEECc-----CCcChHHHHHHHHh-cCC---CeEEEE
Confidence 2 2499998632 21122345565555 577 565555
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.4e-06 Score=72.77 Aligned_cols=95 Identities=18% Similarity=0.277 Sum_probs=69.3
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-CeEEEeCCCCC--C--CC--CccEEEecccc
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TE-NLKYIAGDMFQ--Y--IP--PADAYFFKLVF 263 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-ri~~~~~D~~~--~--~p--~~D~i~~~~~l 263 (360)
..+||||||.|.+...+|+++|+..++|+++ ...+..+.+ .- ++.++++|... + .+ +.|-|++.+.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999999 555544432 33 89999999866 1 22 46666653211
Q ss_pred ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 264 HAFGDED-------CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 264 h~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
-|+... ...+|+.+.+.|+| ||.|.+..
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccC---CCEEEEEe
Confidence 122111 23689999999999 99988754
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.4e-06 Score=81.12 Aligned_cols=127 Identities=21% Similarity=0.291 Sum_probs=80.6
Q ss_pred ChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhh--cCCCCEEEEeCCCCchHHHHHHHHC----CCCeEEEeec-
Q 018116 155 NYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKI--FEGLGSIVDVGGGNGGFSKIISEAF----PGIKCTVLDL- 227 (360)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~--~~~~~~iLDvG~G~G~~~~~l~~~~----p~~~~~~~D~- 227 (360)
..|+.+++|+.....|.+++.. .+.+..... ......|+|||||+|-++...+++. ...++.+++-
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 5688888888877777776532 122222100 0135789999999999987766653 3568999997
Q ss_pred hHHHhcC----C--C-CCCeEEEeCCCCC-CCC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEE
Q 018116 228 PHAVANM----P--Q-TENLKYIAGDMFQ-YIP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKV 291 (360)
Q Consensus 228 ~~~~~~a----~--~-~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~l 291 (360)
+.+.... + . .++|+++.+|+.+ ..| .+|+|++-..=.....+-....|..+.+.|+| ||.+
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp---~Gi~ 293 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP---DGIM 293 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE---EEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC---CCEE
Confidence 5544322 1 1 6899999999988 555 69999875443333344556778888999999 6544
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.8e-06 Score=70.52 Aligned_cols=99 Identities=18% Similarity=0.260 Sum_probs=73.4
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCC----------------CCCeEEEe
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQ----------------TENLKYIA 244 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~----------------~~ri~~~~ 244 (360)
.+++.+...+.++.++||||+|+|.++..++.-- ++...+|+|. ++.++..++ ..++.++.
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 3455555557789999999999999998887542 4555689998 888875542 46899999
Q ss_pred CCCCCC---CCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 245 GDMFQY---IPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 245 ~D~~~~---~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
||...- ...||.|++-.. +.++.+++-.-|+| ||+++|
T Consensus 151 GDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~---gGrlli 191 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKP---GGRLLI 191 (237)
T ss_pred CCccccCCccCCcceEEEccC--------ccccHHHHHHhhcc---CCeEEE
Confidence 999873 336999988633 23456666667888 999988
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.4e-06 Score=75.49 Aligned_cols=87 Identities=18% Similarity=0.350 Sum_probs=65.7
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIPPA 254 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p~~ 254 (360)
.+++... ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.+
T Consensus 27 ~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~ 102 (294)
T PTZ00338 27 KIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYF 102 (294)
T ss_pred HHHHhcC--CCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccccc
Confidence 3444444 567789999999999999999987 457999999 888876653 4689999999987 56678
Q ss_pred cEEEeccccccCChhHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKIL 275 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L 275 (360)
|+|++ +.-++++.+...++|
T Consensus 103 d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 103 DVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred CEEEe-cCCcccCcHHHHHHH
Confidence 98775 555556665555555
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.9e-06 Score=76.00 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=71.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---C-CCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQY---I-PPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~---~-p~~D~i~ 258 (360)
...++||.||+|.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|...- . ..||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999998666778999999 999887763 47999999998762 2 2599999
Q ss_pred eccccccCC--hh---HHHHHHH-HHHHhccCCCCCcEEEE
Q 018116 259 FKLVFHAFG--DE---DCLKILK-KCREAIAGNGERGKVLI 293 (360)
Q Consensus 259 ~~~~lh~~~--~~---~~~~~L~-~~~~~L~p~~~gG~lli 293 (360)
+-. ...+. .. --..+++ .++++|+| ||.+++
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 742 11110 00 0235777 88999999 776654
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.8e-06 Score=69.73 Aligned_cols=95 Identities=11% Similarity=0.203 Sum_probs=63.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---C-CccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---P-PADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---p-~~D~i~~~~~l 263 (360)
...+|||+|||+|.++..++.+. ..+++++|. +.+++.+++ ..+++++.+|+++.. . .||+|++.=-.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 45799999999999998766554 368999999 888776653 357999999987622 2 49999875442
Q ss_pred ccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeee
Q 018116 264 HAFGDEDCLKILKKCRE--AIAGNGERGKVLIMDIV 297 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~e~~ 297 (360)
+. .-...+++.+.+ +|.| ++ +++++..
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~---~~-iv~ve~~ 160 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLAD---EA-LIYVESE 160 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCC---Cc-EEEEEec
Confidence 21 112234454444 3677 44 5555543
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=5e-06 Score=73.23 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=78.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEEeccccccCCh-
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGD- 268 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~- 268 (360)
.....++|+|||.|-+.. .+|.+..++.|+ ...+..+++.+.......|+.. +.+ .||..+...++||++.
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 457899999999997642 348889999999 7788888765544667778876 544 6999999999999975
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
....++++++.+.++| ||..+|.-....
T Consensus 120 ~RR~~~l~e~~r~lrp---gg~~lvyvwa~~ 147 (293)
T KOG1331|consen 120 ERRERALEELLRVLRP---GGNALVYVWALE 147 (293)
T ss_pred HHHHHHHHHHHHHhcC---CCceEEEEehhh
Confidence 4566899999999999 999877665443
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-05 Score=68.08 Aligned_cols=124 Identities=16% Similarity=0.279 Sum_probs=86.7
Q ss_pred EEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--C-ccEEEeccccccCC
Q 018116 199 IVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP--P-ADAYFFKLVFHAFG 267 (360)
Q Consensus 199 iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p--~-~D~i~~~~~lh~~~ 267 (360)
|.||||..|.+.+.|+++...-+++..|+ +..++.|++ .++|+++.+|-++.++ . .|+|++..+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988779999999 888877763 6899999999887543 3 888887664 5
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEE
Q 018116 268 DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKIT 347 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
-....+||.+....++. ..+|++ -+ ......++++|.+.||.+++-.
T Consensus 77 G~lI~~ILe~~~~~~~~---~~~lIL-qP-----------------------------~~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS---AKRLIL-QP-----------------------------NTHAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGTT-----EEEE-EE-----------------------------SS-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhcc---CCeEEE-eC-----------------------------CCChHHHHHHHHHCCCEEEEeE
Confidence 66678888888777765 345554 11 1146788999999999987765
Q ss_pred ee--CC-ceeEEEEe
Q 018116 348 NV--FG-LKSLIEVY 359 (360)
Q Consensus 348 ~~--~~-~~~vi~~~ 359 (360)
-+ .+ +.-+|.+.
T Consensus 124 lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 124 LVEENGRFYEIIVAE 138 (205)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEeECCEEEEEEEEE
Confidence 55 23 33355543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00014 Score=59.87 Aligned_cols=67 Identities=16% Similarity=0.321 Sum_probs=52.2
Q ss_pred CCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCC--CCccEEEeccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYI--PPADAYFFKLV 262 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~--p~~D~i~~~~~ 262 (360)
..-++|||||+|..+..|++.. |+.-+...|+ |.+++...+ ..+++.+..|+.... .+.|+++++--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCC
Confidence 6789999999999999888865 7888999999 888876442 456778888887732 36888877543
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-05 Score=72.92 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHC----CCCeEEEeec-hHHHhcCCC------CCCeEE--EeCCCCCC---C-----C-
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAF----PGIKCTVLDL-PHAVANMPQ------TENLKY--IAGDMFQY---I-----P- 252 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~------~~ri~~--~~~D~~~~---~-----p- 252 (360)
+...|+|+|||+|.=...|++.+ ...+++.+|+ .+.++.+.. .+.+++ +++|+.+. . +
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 55689999999998877777665 3468999999 666665432 355666 78888552 2 1
Q ss_pred CccEE-EeccccccCChhHHHHHHHHHHH-hccCCCCCcEEEE
Q 018116 253 PADAY-FFKLVFHAFGDEDCLKILKKCRE-AIAGNGERGKVLI 293 (360)
Q Consensus 253 ~~D~i-~~~~~lh~~~~~~~~~~L~~~~~-~L~p~~~gG~lli 293 (360)
...++ ++..++.+++++++..+|+++++ .|+| |+.|+|
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLi 195 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLI 195 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEE
Confidence 25565 44569999999999999999999 9999 777766
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.3e-05 Score=68.08 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=92.3
Q ss_pred hcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CC--CeEEEeCCCCC-CCC--CccEEEecccc
Q 018116 192 IFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TE--NLKYIAGDMFQ-YIP--PADAYFFKLVF 263 (360)
Q Consensus 192 ~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~--ri~~~~~D~~~-~~p--~~D~i~~~~~l 263 (360)
..+....++|||||.|.....+..+. --+.+.+|. -.|++.++. .+ .+++..+|-.. ++. ++|+|+.+..+
T Consensus 69 ~kk~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 69 CKKSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred HhhhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh
Confidence 34567899999999999999998874 337888998 788888775 23 34556777544 444 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcc------cCHHHHHHHHH
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKE------RTDEEWKTLFL 337 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~------~t~~e~~~ll~ 337 (360)
|+.++ ...-+.+++.+|+| +|.++- ...-.+. +.+......+.-+-..||.. -...++-.+|.
T Consensus 148 HW~Nd--LPg~m~~ck~~lKP---Dg~Fia-smlggdT-----LyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~ 216 (325)
T KOG2940|consen 148 HWTND--LPGSMIQCKLALKP---DGLFIA-SMLGGDT-----LYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLT 216 (325)
T ss_pred hhhcc--CchHHHHHHHhcCC---Cccchh-HHhcccc-----HHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHh
Confidence 96665 45678899999999 775543 2222221 11111111111111123321 13467888999
Q ss_pred HCCCceeEE
Q 018116 338 DAGFTHYKI 346 (360)
Q Consensus 338 ~aGf~~~~~ 346 (360)
.|||....+
T Consensus 217 rAGF~m~tv 225 (325)
T KOG2940|consen 217 RAGFSMLTV 225 (325)
T ss_pred hcCccccee
Confidence 999985543
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.3e-05 Score=70.82 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=74.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C-------CC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--Y-I-------PP 253 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~-~-------p~ 253 (360)
..+.++||+||+++|.-+..++...| +.+++.+|. ++..+.|++ .++|+++.||..+ + . ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 45678999999999999999999874 779999999 777666653 6899999998866 1 1 36
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
||+|++-. ....-...+..+.+.|+| || ++++|.+.
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~---GG-viv~DNvl 192 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKV---GG-VIGYDNTL 192 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCC---Ce-EEEEcCCC
Confidence 99998732 344456778888899999 55 55656544
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1e-05 Score=82.57 Aligned_cols=97 Identities=12% Similarity=0.152 Sum_probs=71.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCC---CC-CccEEEec
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------T-ENLKYIAGDMFQY---IP-PADAYFFK 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~ri~~~~~D~~~~---~p-~~D~i~~~ 260 (360)
..+++|||+|||+|.++..+++. ...+++++|+ +.+++.+++ . ++++++.+|+++. .+ .||+|++.
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 35689999999999999999985 3346999999 888887764 2 5899999998762 23 69999983
Q ss_pred ccc--c-----c-C-ChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 261 LVF--H-----A-F-GDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 261 ~~l--h-----~-~-~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
--- . . + ....-..+++.+.+.|+| ||.+++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 110 0 0 0 012345688889999999 8877653
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.4e-05 Score=67.46 Aligned_cols=127 Identities=18% Similarity=0.195 Sum_probs=79.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHh-cCCCCCCeE-EEeCCCCC-C---C----CCccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVA-NMPQTENLK-YIAGDMFQ-Y---I----PPADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~ri~-~~~~D~~~-~---~----p~~D~i~~~~~ 262 (360)
....++||+|||+|.++..+++. +..+++++|. +.++. ..+...++. +...|+.. . . ..+|+.+++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 35679999999999999999986 4568999999 64555 455566654 33335442 1 1 24777776543
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCccc-------CHHHHHHH
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKER-------TDEEWKTL 335 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~-------t~~e~~~l 335 (360)
.+|..+.++|+| |-.++++.+-+.-... .. .-+|-.+ ..+++...
T Consensus 153 ----------~~l~~i~~~l~~---~~~~~L~KPqFE~~~~-----------~~----~~~giv~~~~~~~~~~~~~~~~ 204 (228)
T TIGR00478 153 ----------SILPELDLLLNP---NDLTLLFKPQFEAGRE-----------KK----NKKGVVRDKEAIALALHKVIDK 204 (228)
T ss_pred ----------hHHHHHHHHhCc---CeEEEEcChHhhhcHh-----------hc----CcCCeecCHHHHHHHHHHHHHH
Confidence 358888999998 4455555333221110 00 0012222 45667778
Q ss_pred HHHCCCceeEEEee
Q 018116 336 FLDAGFTHYKITNV 349 (360)
Q Consensus 336 l~~aGf~~~~~~~~ 349 (360)
+.+.||++..+.+-
T Consensus 205 ~~~~~~~~~~~~~s 218 (228)
T TIGR00478 205 GESPDFQEKKIIFS 218 (228)
T ss_pred HHcCCCeEeeEEEC
Confidence 88889998877655
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.5e-05 Score=71.69 Aligned_cols=96 Identities=17% Similarity=0.284 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC-CccEEEe
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---YIP-PADAYFF 259 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~~p-~~D~i~~ 259 (360)
..++||-||+|.|.++..+++..+--+++.+|+ +.+++.+++ .+|++++.+|..+ ..+ .||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 347999999999999999999988889999999 999988774 4899999999877 334 5999987
Q ss_pred ccccccCChh---HHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 260 KLVFHAFGDE---DCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 260 ~~~lh~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
-..=. .... --..+++.++++|++ +|.++..
T Consensus 156 D~tdp-~gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 156 DSTDP-VGPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred cCCCC-CCcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 43211 0000 024789999999999 7766664
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.6e-05 Score=69.88 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=69.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEecccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~ 265 (360)
..+-|||||||+|-++.-.+++ ...++..++-.+|.+.|++ .+||.++.|-+.+ +.| ..|++++--.=.-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 4678999999999988766665 3457888888888888774 6899999999987 677 5999987433322
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
+-.+...+-.-.++++|+| .|.++
T Consensus 256 L~NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred hhhHHHHHHHHHHHhhcCC---CCccc
Confidence 3344444444467799999 77765
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.4e-05 Score=74.30 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=69.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCC---C----CCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------T-ENLKYIAGDMFQY---I----PPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~ri~~~~~D~~~~---~----p~~D~i 257 (360)
.++.+|||+|||+|.++...+.. ...+++++|+ +.+++.+++ . ++++++.+|+++. . ..||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 45789999999999998776643 3458999999 888887764 2 4799999999772 1 259999
Q ss_pred EeccccccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 258 FFKLVFHAFGD-------EDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 258 ~~~~~lh~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++.---..-+. ..-..+++.+.+.|+| ||.|+.+.
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 97522110111 1233456678899999 88877654
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.1e-05 Score=65.23 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=55.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCCccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIPPADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p~~D~i~~~~~ 262 (360)
.-.+++|+|+|||||.+++..+-.. -.+++++|+ +++++.+++ ..+|.|.+.|+..-...+|.++++=-
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPP 117 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPP 117 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCC
Confidence 3467899999999999998877653 368999999 999988875 56899999998665557888877543
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.3e-05 Score=65.85 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=52.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC----CCC----CccEEE
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ----YIP----PADAYF 258 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~----~~p----~~D~i~ 258 (360)
....|||+|||+|..+..++...|.++++++|. +.++..|.+ .+++.++..++.. +.+ .+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 345899999999999999999999999999999 666665543 7899988665543 222 488887
Q ss_pred ec
Q 018116 259 FK 260 (360)
Q Consensus 259 ~~ 260 (360)
++
T Consensus 228 sN 229 (328)
T KOG2904|consen 228 SN 229 (328)
T ss_pred cC
Confidence 64
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.3e-05 Score=75.72 Aligned_cols=90 Identities=18% Similarity=0.298 Sum_probs=64.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC-----C-C-CccEEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY-----I-P-PADAYF 258 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~-----~-p-~~D~i~ 258 (360)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ ..+++|+.+|+.+. . . .||+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4566899999999999999999874 48999999 999887764 35899999998641 1 1 489988
Q ss_pred eccccccCChhH-HHHHHHHHHHhccCCCCCcEEEE
Q 018116 259 FKLVFHAFGDED-CLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 259 ~~~~lh~~~~~~-~~~~L~~~~~~L~p~~~gG~lli 293 (360)
+.- |..- ...+++.+.+ ++| ++.+++
T Consensus 368 ~dP-----Pr~G~~~~~l~~l~~-l~~---~~ivyv 394 (431)
T TIGR00479 368 LDP-----PRKGCAAEVLRTIIE-LKP---ERIVYV 394 (431)
T ss_pred ECc-----CCCCCCHHHHHHHHh-cCC---CEEEEE
Confidence 622 1111 2355665554 777 565555
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.8e-05 Score=70.29 Aligned_cols=103 Identities=16% Similarity=0.225 Sum_probs=73.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCCC----CCCeEE--EeCCCC---CCCCCccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMPQ----TENLKY--IAGDMF---QYIPPADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----~~ri~~--~~~D~~---~~~p~~D~i~~~~~ 262 (360)
-.+.+|||+|+|.|..+.+....++.. +++.+|. +.+++.++. ...... ...++. .+.+..|+|+++++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 356799999999999888888888744 6889999 888776543 111110 111121 13445799999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
|-.++++....+++++-+.+. +.|+|+|+-.+..
T Consensus 112 L~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~G 145 (274)
T PF09243_consen 112 LNELPSAARAELVRSLWNKTA-----PVLVLVEPGTPAG 145 (274)
T ss_pred hhcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChHH
Confidence 999998777888888877654 4899998766553
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.3e-05 Score=72.43 Aligned_cols=64 Identities=25% Similarity=0.311 Sum_probs=52.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C-CCccEEEec
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---I-PPADAYFFK 260 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~-p~~D~i~~~ 260 (360)
+..+|||+|||+|.++..+++. +.+++++|. +.+++.+++ .++++|+.+|+.+. . ..||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4589999999999999999984 579999999 999887764 35799999999652 2 259999875
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.5e-05 Score=70.00 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=69.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CC--CCccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YI--PPADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~--p~~D~i~~~~~l 263 (360)
-..+.|||||||+|-++.--+++. ..++.++|-.++++.+.+ .+.|+++.+.+.+ .+ +..|+|++-+.=
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 457899999999999999888875 568999999887776653 5679999998877 34 479999987765
Q ss_pred ccCC-hhHHHHHHHHHHHhccCCCCCcEEE
Q 018116 264 HAFG-DEDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 264 h~~~-~~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
+.+- +.-...+|-.=-++|+| ||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 5432 22222334444488999 77654
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.8e-05 Score=70.34 Aligned_cols=99 Identities=17% Similarity=0.274 Sum_probs=72.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---C-CC-CccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---Y-IP-PADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~-~p-~~D~i 257 (360)
+..++||-||+|.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4689999999999999999987766779999999 999887763 5799999999865 2 33 69999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 258 FFKLVFHAFGDED--CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 258 ~~~~~lh~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++-..--..+... ...+++.++++|+| ||.+++.-
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 8732211111111 24789999999999 77766644
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.5e-05 Score=65.96 Aligned_cols=89 Identities=21% Similarity=0.269 Sum_probs=67.2
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHh---cCCC---CCCeEEEeCCCCC-C-CCCccEEEeccccccCCh
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVA---NMPQ---TENLKYIAGDMFQ-Y-IPPADAYFFKLVFHAFGD 268 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~---~a~~---~~ri~~~~~D~~~-~-~p~~D~i~~~~~lh~~~~ 268 (360)
+++|||+|.|.-++.++=.+|+.+++.+|. ..=+. .+.. -++++++++++.+ . ...||+|+++.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999997 43322 2221 5689999999877 2 33699999987642
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
...++.-+...+++ ||+++..-
T Consensus 127 --l~~l~~~~~~~l~~---~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKP---GGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred --HHHHHHHHHHhcCC---CCEEEEEc
Confidence 34678888888999 89888854
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.9e-05 Score=69.94 Aligned_cols=137 Identities=12% Similarity=0.177 Sum_probs=82.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCC----C------------------------------C
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMP----Q------------------------------T 237 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~----~------------------------------~ 237 (360)
.++.++||||||.--+ .++...+.. +++..|. +.-.+..+ . .
T Consensus 55 ~~g~~llDiGsGPtiy--~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIY--QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--G--GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHH--hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3567999999998544 233333334 4777887 54443111 0 1
Q ss_pred CCeE-EEeCCCCCC--C------CC-ccEEEeccccccCC--hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch
Q 018116 238 ENLK-YIAGDMFQY--I------PP-ADAYFFKLVFHAFG--DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH 305 (360)
Q Consensus 238 ~ri~-~~~~D~~~~--~------p~-~D~i~~~~~lh~~~--~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~ 305 (360)
..|+ ++..|+.++ . |. ||+|++..+|.... .++-.+.++++.++|+| ||.|++...........
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l~~t~Y~v- 208 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVLGSTYYMV- 208 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEESS-SEEEE-
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEcCceeEEE-
Confidence 1243 667888772 1 33 99999999998754 45677899999999999 99999877643221000
Q ss_pred hhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEe
Q 018116 306 QVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITN 348 (360)
Q Consensus 306 ~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
. -..+..-..+.+.+++.++++||.+.+...
T Consensus 209 ---------G---~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 209 ---------G---GHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ---------T---TEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ---------C---CEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 0 000112234899999999999999888875
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.4e-05 Score=67.43 Aligned_cols=74 Identities=23% Similarity=0.446 Sum_probs=62.6
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP 252 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p 252 (360)
.+.++.+.+ ..+...||+||.|+|.++..++++ +.+++.+++ |.++....+ +...+++.+|+++ ++|
T Consensus 47 ~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 47 IDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 355566666 788999999999999999999998 778999999 888776543 5789999999998 788
Q ss_pred CccEEEe
Q 018116 253 PADAYFF 259 (360)
Q Consensus 253 ~~D~i~~ 259 (360)
-||+++.
T Consensus 123 ~fd~cVs 129 (315)
T KOG0820|consen 123 RFDGCVS 129 (315)
T ss_pred ccceeec
Confidence 8999886
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00026 Score=60.62 Aligned_cols=128 Identities=14% Similarity=0.113 Sum_probs=91.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC---CCC--CccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQ---YIP--PADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~---~~p--~~D~i 257 (360)
.+++.+|||.-.|-|.+++..+++ +. .++-++- |.+++.|.- ..+|+++.||..+ +++ +||+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 357899999999999999998887 55 7888888 999988763 4579999999977 455 49997
Q ss_pred EeccccccCC------hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHH
Q 018116 258 FFKLVFHAFG------DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEE 331 (360)
Q Consensus 258 ~~~~~lh~~~------~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e 331 (360)
+ |+-| .=-...+-++++|.|+| ||+++-....+... +. |+. -+..
T Consensus 210 i-----HDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHYvG~Pg~r-----------yr---------G~d-~~~g 260 (287)
T COG2521 210 I-----HDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHYVGNPGKR-----------YR---------GLD-LPKG 260 (287)
T ss_pred e-----eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEEeCCCCcc-----------cc---------cCC-hhHH
Confidence 6 3221 11245789999999999 99987644222111 00 110 3457
Q ss_pred HHHHHHHCCCceeEEEeeCC
Q 018116 332 WKTLFLDAGFTHYKITNVFG 351 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~~~~ 351 (360)
..+.|+++||.+++......
T Consensus 261 Va~RLr~vGF~~v~~~~~~~ 280 (287)
T COG2521 261 VAERLRRVGFEVVKKVREAL 280 (287)
T ss_pred HHHHHHhcCceeeeeehhcc
Confidence 77899999999777665533
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.9e-05 Score=75.32 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=69.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC-C-----CCCeEEEeCCCCC---CCC--CccEEEeccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP-Q-----TENLKYIAGDMFQ---YIP--PADAYFFKLV 262 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~-----~~ri~~~~~D~~~---~~p--~~D~i~~~~~ 262 (360)
....+||||||.|.++..+++.+|+..++|+|. ...+..+. . -.++.++++|+.. .++ +.|-|++.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F- 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF- 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC-
Confidence 467899999999999999999999999999999 54433322 1 4678888887642 244 477777643
Q ss_pred cccCChhH-----------HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 263 FHAFGDED-----------CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 263 lh~~~~~~-----------~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
||+. ...+|+.+++.|+| ||.|.+..
T Consensus 426 ----PDPWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T 462 (506)
T PRK01544 426 ----PDPWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS 462 (506)
T ss_pred ----CCCCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence 3332 24689999999999 99988744
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.9e-05 Score=66.03 Aligned_cols=87 Identities=8% Similarity=0.088 Sum_probs=66.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCCC-CCccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQYI-PPADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~~-p~~D~i~~~~ 261 (360)
..+++||=||||-|..+..+++. |. +++.+|+ +.+++.+++ .+|++++.. +.+.. ..||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 46799999999999999999975 54 9999999 888877664 689988862 32222 4699999753
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
. .+ ....+.++++|+| ||.++.
T Consensus 148 ~----~~---~~fy~~~~~~L~~---~Gi~v~ 169 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLKE---DGVFIS 169 (262)
T ss_pred C----CC---hHHHHHHHHhcCC---CcEEEE
Confidence 2 22 3678899999999 776655
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.5e-05 Score=69.14 Aligned_cols=77 Identities=22% Similarity=0.269 Sum_probs=61.8
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC--C-C-
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ--Y-I- 251 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~--~-~- 251 (360)
...+++.+. ..++..+||.+||.|+.+..+++.+| +.+++++|. +.+++.+++ .+|++++.+|+.+ . .
T Consensus 8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 355666665 45678999999999999999999986 789999999 999988764 3689999999875 1 1
Q ss_pred ---CCccEEEec
Q 018116 252 ---PPADAYFFK 260 (360)
Q Consensus 252 ---p~~D~i~~~ 260 (360)
+.+|.|++-
T Consensus 86 ~~~~~vDgIl~D 97 (296)
T PRK00050 86 EGLGKVDGILLD 97 (296)
T ss_pred cCCCccCEEEEC
Confidence 158888773
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.7e-05 Score=75.30 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=66.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEe---ec-hHHHhcCCCCCCeEEEeCCCCC---CCC--CccEEEeccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVL---DL-PHAVANMPQTENLKYIAGDMFQ---YIP--PADAYFFKLVFH 264 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~ri~~~~~D~~~---~~p--~~D~i~~~~~lh 264 (360)
.....+||||||+|.++..|+.+ ++..+.+ |. +..++.|.+. .|.-+.+-+-+ |+| .||+|.++.++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhcccccc
Confidence 45678999999999999999987 3322221 22 2333333221 12222222211 566 499999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
.|...+- .+|-++-|+|+| ||.+++..+-..
T Consensus 193 ~W~~~~g-~~l~evdRvLRp---GGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPNDG-FLLFEVDRVLRP---GGYFVLSGPPVY 223 (506)
T ss_pred cchhccc-ceeehhhhhhcc---CceEEecCCccc
Confidence 9987653 589999999999 999888665444
|
; GO: 0008168 methyltransferase activity |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.74 E-value=6.8e-05 Score=63.89 Aligned_cols=96 Identities=10% Similarity=0.137 Sum_probs=63.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C---CC-ccEEEe
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I---PP-ADAYFF 259 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~---p~-~D~i~~ 259 (360)
.+.++||++||+|.++..++.+.. .+++.+|. +.+++.+++ .++++++.+|+++. . .. +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 467999999999999999999854 37999999 777766553 35789999999551 1 12 677766
Q ss_pred ccccccCChhHHHHHHHHHH--HhccCCCCCcEEEEEeeec
Q 018116 260 KLVFHAFGDEDCLKILKKCR--EAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~--~~L~p~~~gG~lli~e~~~ 298 (360)
-=-.. . ....+++..+. .+|++ +.++|+|...
T Consensus 128 DPPy~-~--~~~~~~l~~l~~~~~l~~----~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFF-N--GALQALLELCENNWILED----TVLIVVEEDR 161 (189)
T ss_pred CcCCC-C--CcHHHHHHHHHHCCCCCC----CeEEEEEecC
Confidence 32221 1 11233444443 35666 5577777544
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=69.67 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=61.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C-CCccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---I-PPADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~-p~~D~i~~~~~l 263 (360)
+..+|||+|||+|.++..++.. ..+++++|. +.+++.+++ .++++|+.+|+.+. . ..||+|++.=--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 4579999999999999999864 568999999 888887764 34799999998652 2 359998874211
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
-.+ ..++++.+.+ ++| ++.+++
T Consensus 311 ~G~----~~~~l~~l~~-~~p---~~ivyv 332 (374)
T TIGR02085 311 RGI----GKELCDYLSQ-MAP---KFILYS 332 (374)
T ss_pred CCC----cHHHHHHHHh-cCC---CeEEEE
Confidence 111 1244555543 677 555554
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00011 Score=63.12 Aligned_cols=119 Identities=21% Similarity=0.261 Sum_probs=82.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHH---HhcCCC---CCCeEEEeCCCCCC--CCC-ccEEEecccccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHA---VANMPQ---TENLKYIAGDMFQY--IPP-ADAYFFKLVFHA 265 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~---~~ri~~~~~D~~~~--~p~-~D~i~~~~~lh~ 265 (360)
..+++|||.|.|.-++-++=.+|+.+++.+|. ..= ++.+.. -++++++++.+++- .+. ||+|+++.+--
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999999999999999999997 433 333322 67899999988762 235 99999876532
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
...++.-+...+++ ||+++..-.. . ++. ...+.+......|+.+..
T Consensus 147 -----L~~l~e~~~pllk~---~g~~~~~k~~--------------~-----------~~~-e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 147 -----LNVLLELCLPLLKV---GGGFLAYKGL--------------A-----------GKD-ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred -----hHHHHHHHHHhccc---CCcchhhhHH--------------h-----------hhh-hHHHHHHHHHhhcCcEEE
Confidence 33456666677787 7776541110 0 000 234555666777888888
Q ss_pred EEee
Q 018116 346 ITNV 349 (360)
Q Consensus 346 ~~~~ 349 (360)
+...
T Consensus 193 ~~~~ 196 (215)
T COG0357 193 VFSL 196 (215)
T ss_pred EEEe
Confidence 8766
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00028 Score=62.45 Aligned_cols=89 Identities=15% Similarity=0.263 Sum_probs=64.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC---
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIPP--- 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p~--- 253 (360)
+.+++... ..+...|+|||+|.|.++..|+++ ..+++++++ +.+++..++ .++++++.+|+.+ ++++
T Consensus 20 ~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 20 DKIVEAAN--ISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 44455554 556789999999999999999998 456888888 766665543 6899999999988 6773
Q ss_pred ccEEEeccccccCChhHHHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILK 276 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~ 276 (360)
++.|+ .|.=++.+.+-..++|.
T Consensus 96 ~~~vV-aNlPY~Isspii~kll~ 117 (259)
T COG0030 96 PYKVV-ANLPYNISSPILFKLLE 117 (259)
T ss_pred CCEEE-EcCCCcccHHHHHHHHh
Confidence 45544 55556666654444443
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=8.7e-05 Score=62.05 Aligned_cols=100 Identities=15% Similarity=0.278 Sum_probs=67.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCCCCC-ccEEEec
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------------TENLKYIAGDMFQYIPP-ADAYFFK 260 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~ri~~~~~D~~~~~p~-~D~i~~~ 260 (360)
.-.+.|||||-|.++..|+..||+.-..|+++ -.+.+..++ ..++.+...+.+.-.|+ |.--.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35799999999999999999999999999888 555443221 45677777776664443 2222223
Q ss_pred cccccCChhH-----------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 261 LVFHAFGDED-----------CLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 261 ~~lh~~~~~~-----------~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
-.++.++|+. ...++.+..=+|++ ||.++.+.-+.
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv~ 186 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDVK 186 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeHH
Confidence 3333344433 23577788888999 89888766543
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0027 Score=56.68 Aligned_cols=134 Identities=16% Similarity=0.129 Sum_probs=91.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHH-------hc---CC----------------------------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAV-------AN---MP---------------------------- 235 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-------~~---a~---------------------------- 235 (360)
...+||-=|||-|.++-.++.. +..+.+.+. -.|+ .. ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4579999999999999999998 667777776 3332 11 00
Q ss_pred --------CCCCeEEEeCCCCC--CCC----CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 236 --------QTENLKYIAGDMFQ--YIP----PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 236 --------~~~ri~~~~~D~~~--~~p----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
...+++...|||.+ ..+ .||+|+..+.+- +-+.+...|+.|+++|+| ||.+|=+-+..-..
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkp---gG~WIN~GPLlyh~ 208 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKP---GGYWINFGPLLYHF 208 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhcc---CCEEEecCCccccC
Confidence 03578899999987 223 599998876654 455688999999999999 88554333222111
Q ss_pred CcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEe
Q 018116 302 EDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITN 348 (360)
Q Consensus 302 ~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
.. .. ......-+.+.+|+.++.++.||++++...
T Consensus 209 ~~------------~~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 EP------------MS-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CC------------CC-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 10 00 000112466999999999999999877655
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00071 Score=61.94 Aligned_cols=128 Identities=14% Similarity=0.205 Sum_probs=88.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCC--C-CccEEEeccccccCChh
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYI--P-PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~~--p-~~D~i~~~~~lh~~~~~ 269 (360)
+.++.++|||||++|+++..++++ +.+++++|..++.......++|....+|.+... + .+|.+++-.+-. +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P- 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---P- 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---H-
Confidence 357889999999999999999998 679999999777777777899999999988733 2 599988755432 2
Q ss_pred HHHHHHHHHHHhccCCCCC-cEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCc-eeEEE
Q 018116 270 DCLKILKKCREAIAGNGER-GKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT-HYKIT 347 (360)
Q Consensus 270 ~~~~~L~~~~~~L~p~~~g-G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~-~~~~~ 347 (360)
.++.+-+.++|.. | -+-.|+..-.+-..... . . ....+.+.+.|.++|.. .+++.
T Consensus 283 --~rva~lm~~Wl~~---g~cr~aIfnLKlpmk~r~~---~---v------------~~~l~~i~~~l~~~g~~~~~~~k 339 (357)
T PRK11760 283 --ARVAELMAQWLVN---GWCREAIFNLKLPMKKRYE---E---V------------RQCLELIEEQLDENGINAQIQAK 339 (357)
T ss_pred --HHHHHHHHHHHhc---CcccEEEEEEEcCCCCCHH---H---H------------HHHHHHHHHHHHHcCCccceeee
Confidence 3567888888986 3 24455555443322210 0 0 00234466777788873 44555
Q ss_pred ee
Q 018116 348 NV 349 (360)
Q Consensus 348 ~~ 349 (360)
++
T Consensus 340 hL 341 (357)
T PRK11760 340 QL 341 (357)
T ss_pred ee
Confidence 55
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00039 Score=65.74 Aligned_cols=90 Identities=20% Similarity=0.126 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--C-CCCccEEEecccccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ--Y-IPPADAYFFKLVFHA 265 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~--~-~p~~D~i~~~~~lh~ 265 (360)
..+|||++||+|.+++.++...+..+++++|. +.+++.+++ .+++++..+|... . ...||+|++- ..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD-P~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID-PF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC-CC--
Confidence 46899999999999999998877668999999 888887764 3456788898865 2 2359999873 21
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.. ...+|..+.+.+++ ||.|++.
T Consensus 135 -Gs--~~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred -CC--cHHHHHHHHHHhcC---CCEEEEE
Confidence 11 23567786777888 8888887
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0011 Score=56.51 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=74.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeechHHHhcCCCCCCeEEEeCCCCCC-C--------C
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDLPHAVANMPQTENLKYIAGDMFQY-I--------P 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~-~--------p 252 (360)
.++.+++. .+.+..+|+|+|+-.|++++.+++... +.+++++|+.++-... .|.++.+|+..+ . +
T Consensus 34 ~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~----~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 34 LELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP----GVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred HHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC----CceEEeeeccCccHHHHHHHHcC
Confidence 45566663 568899999999999999999888764 4569999985554443 399999999873 1 2
Q ss_pred --CccEEEe---ccccccCCh------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 253 --PADAYFF---KLVFHAFGD------EDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 253 --~~D~i~~---~~~lh~~~~------~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.+|+|++ .++--+++. .-+...+.-+...|+| ||.+++-..
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~f 160 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVF 160 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEE
Confidence 2699885 222222222 2244566677789999 888877544
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=4.2e-05 Score=64.05 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=84.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC-CCCCCCCCccEEEeccccccCChhHH
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAG-DMFQYIPPADAYFFKLVFHAFGDEDC 271 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~-D~~~~~p~~D~i~~~~~lh~~~~~~~ 271 (360)
....++||+|+|.|..+..++..+.. +...++ ..|....++ .+.++... +..+.--++|+|.|.++|.-..++
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p-- 185 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP-- 185 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--
Confidence 45689999999999999988877653 444455 455555543 12222211 111111159999999998654443
Q ss_pred HHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCccc--CHHHHHHHHHHCCCceeEEEee
Q 018116 272 LKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKER--TDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 272 ~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~--t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
-++|+.++.+|+|. .|++++.-..+-......+..-...-.|-.. ..+|+.+ ....+-++|+.+||.+.....+
T Consensus 186 ~kLL~Di~~vl~ps--ngrvivaLVLP~~hYVE~N~~g~~~rPdn~L--e~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPS--NGRVIVALVLPYMHYVETNTSGLPLRPDNLL--ENNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhccC--CCcEEEEEEecccceeecCCCCCcCCchHHH--HhcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 58999999999993 6887765433221110000000000001011 1234433 2345678999999998776555
Q ss_pred C
Q 018116 350 F 350 (360)
Q Consensus 350 ~ 350 (360)
|
T Consensus 262 P 262 (288)
T KOG3987|consen 262 P 262 (288)
T ss_pred C
Confidence 3
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00028 Score=60.33 Aligned_cols=90 Identities=21% Similarity=0.324 Sum_probs=64.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC--CCccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYI--PPADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~--p~~D~i~~~~~ 262 (360)
..++.+|+|.-||.|.+++.+++..+..+++.+|+ |.+++.+++ .++|....+|..+-. ..+|-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l- 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL- 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence 35678999999999999999999777889999999 888876653 678999999987732 3599888854
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEE
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKV 291 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~l 291 (360)
|. .+..+|..+.+++++ ||.+
T Consensus 178 ----p~-~~~~fl~~~~~~~~~---~g~i 198 (200)
T PF02475_consen 178 ----PE-SSLEFLDAALSLLKE---GGII 198 (200)
T ss_dssp ----TS-SGGGGHHHHHHHEEE---EEEE
T ss_pred ----hH-HHHHHHHHHHHHhcC---CcEE
Confidence 22 234678889899998 5543
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00056 Score=55.34 Aligned_cols=93 Identities=19% Similarity=0.320 Sum_probs=63.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCC--CCCccE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEA----FPGIKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQY--IPPADA 256 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~~--~p~~D~ 256 (360)
..+..+|+|+|||.|.++..++.. .++++++++|. ++.++.+.. ..++++..+++... ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 367889999999999999999982 27899999999 777665542 35677777766542 235777
Q ss_pred EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 257 YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++.-|.--.+++ .+|+...+ | +-+.+++-
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~---~---~~~~l~~v 131 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR---P---NARFLVLV 131 (141)
T ss_pred EEEeecccchHH----HHHHHHHH---c---CCCEEEEc
Confidence 776555444444 45666654 4 45555443
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00044 Score=57.20 Aligned_cols=97 Identities=16% Similarity=0.266 Sum_probs=73.5
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCCccEEEeccccccCCh
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIPPADAYFFKLVFHAFGD 268 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p~~D~i~~~~~lh~~~~ 268 (360)
..+.|+|+|+|-++.-.++. .-+++.++. |...+.+.+ .++++++.+|..+ .+..+|+|+|-..=--+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 57899999999988766665 568999999 888777764 5789999999988 6878999987543222234
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
+..+.+++.+-+.|+- ++.++=.+...
T Consensus 112 E~qVpV~n~vleFLr~---d~tiiPq~v~~ 138 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTIIPQEVRI 138 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccccHHHhh
Confidence 4557889999998987 77776544433
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0078 Score=51.49 Aligned_cols=87 Identities=16% Similarity=0.254 Sum_probs=69.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---CccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP---PADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p---~~D~i~~~~~ 262 (360)
+...++.||||..|.+.+.+.+.++...++..|. +..++.|.. .++++...+|-+.++. +.|+++...
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG- 93 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG- 93 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC-
Confidence 3455699999999999999999999999999998 766665542 7899999999987543 489987765
Q ss_pred cccCChhHHHHHHHHHHHhccC
Q 018116 263 FHAFGDEDCLKILKKCREAIAG 284 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p 284 (360)
+.-.-...+|.+-.+-|+.
T Consensus 94 ---MGG~lI~~ILee~~~~l~~ 112 (226)
T COG2384 94 ---MGGTLIREILEEGKEKLKG 112 (226)
T ss_pred ---CcHHHHHHHHHHhhhhhcC
Confidence 3555677888888887763
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00013 Score=60.03 Aligned_cols=62 Identities=23% Similarity=0.527 Sum_probs=46.9
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CC--C-ccEEEec
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---IP--P-ADAYFFK 260 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~p--~-~D~i~~~ 260 (360)
..|+|+-||.|+.++.+++.+. +++++|+ |..++.++. .++|+|+++|+++- .. . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3699999999999999999954 7999999 888877764 67999999999872 22 2 7999873
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0015 Score=54.66 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=70.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCCccEEEeccccccC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIPPADAYFFKLVFHAF 266 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~ 266 (360)
.-.+++|||.|.|+|..+++-++.- ...++..|+ |..+..++- .-.|.+...|...+.+.+|++++..+++.-
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 3457899999999999998877662 335666677 555544432 456778888876655579999999998754
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
+ ...+++. ....|+.+ |..++|.++-++.-
T Consensus 156 ~--~a~~l~~-~~~~l~~~--g~~vlvgdp~R~~l 185 (218)
T COG3897 156 T--EADRLIP-WKDRLAEA--GAAVLVGDPGRAYL 185 (218)
T ss_pred h--HHHHHHH-HHHHHHhC--CCEEEEeCCCCCCC
Confidence 4 4456676 44444431 77888877766553
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00036 Score=59.03 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=58.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------C----CCccEEEec
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDLPHAVANMPQTENLKYIAGDMFQY---------I----PPADAYFFK 260 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~---------~----p~~D~i~~~ 260 (360)
...++||+||++|+++..++++. +..+++++|+..+.. ...+.++.+|+.++ . ..+|+|++=
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 45899999999999999999987 678999999943311 23444445554331 1 259998874
Q ss_pred ccc---cc------CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 261 LVF---HA------FGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 261 ~~l---h~------~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
... .+ ..-+-+...|.-+.+.|+| ||.+++--
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K~ 139 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIKV 139 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEEE
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEEe
Confidence 311 11 1112234455555677899 88777633
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00016 Score=47.66 Aligned_cols=46 Identities=33% Similarity=0.564 Sum_probs=40.2
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
+.|++.|..++++.|+.|||+++|+ +..-+.|+|..|+..|+++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl---~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL---PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCcCeecC
Confidence 5678888876677899999999999 468999999999999999986
|
One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=59.62 Aligned_cols=91 Identities=14% Similarity=0.255 Sum_probs=63.9
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC---
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIPP--- 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p~--- 253 (360)
+.+++.++ ..+...|+|||+|.|.++..|++.. .++++++. +...+..++ .++++++.+|+.+ +.+.
T Consensus 20 ~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~ 95 (262)
T PF00398_consen 20 DKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLK 95 (262)
T ss_dssp HHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCS
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhc
Confidence 45566665 5688999999999999999999986 78999998 777665543 6899999999987 3332
Q ss_pred -ccEEEeccccccCChhHHHHHHHHHHHh
Q 018116 254 -ADAYFFKLVFHAFGDEDCLKILKKCREA 281 (360)
Q Consensus 254 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~ 281 (360)
-.+.+..+.=++.+. .++.++...
T Consensus 96 ~~~~~vv~NlPy~is~----~il~~ll~~ 120 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISS----PILRKLLEL 120 (262)
T ss_dssp SSEEEEEEEETGTGHH----HHHHHHHHH
T ss_pred CCceEEEEEecccchH----HHHHHHhhc
Confidence 334444454444443 455555553
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0012 Score=59.15 Aligned_cols=95 Identities=17% Similarity=0.311 Sum_probs=56.9
Q ss_pred CCCEEEEeCCCCch-HHHHHHHH-CCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC---CCCCccEEEec
Q 018116 195 GLGSIVDVGGGNGG-FSKIISEA-FPGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQ---YIPPADAYFFK 260 (360)
Q Consensus 195 ~~~~iLDvG~G~G~-~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~---~~p~~D~i~~~ 260 (360)
.+.+|+=||||.=- .++.+++. .++..++++|+ +.+.+.+++ ..+++|+++|..+ +...||+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 35699999999654 55666654 36889999999 888876653 6899999999865 24579999876
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.... .+.++..++|.++.+.|+| |..|++
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~---ga~l~~ 228 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAP---GARLVV 228 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-T---TSEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCC---CcEEEE
Confidence 6543 4555667999999999999 777666
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00036 Score=65.46 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=43.3
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ 249 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~ 249 (360)
.++||++||+|.++..+++... +++++|. +++++.+++ .++++|+.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998863 8999999 889887764 3478999999865
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00017 Score=65.17 Aligned_cols=102 Identities=23% Similarity=0.395 Sum_probs=66.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCe-EEEeechHHHhcCC----C---CCCeEEEeCCCCC---CCCCccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIK-CTVLDLPHAVANMP----Q---TENLKYIAGDMFQ---YIPPADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~----~---~~ri~~~~~D~~~---~~p~~D~i~~~~~l 263 (360)
..++|||||.|.|.-+.++-.-+|+++ +++++....+.... . .........|+.. ++|..|.|.+..++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 357899999999998888888899885 66666633332211 1 2233344445433 45655555554444
Q ss_pred ccC----ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 264 HAF----GDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 264 h~~----~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
|.+ ........++++-..+.| ||.|+|+|.-.+
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp 229 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTP 229 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCc
Confidence 443 333445589999999999 999999996544
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0069 Score=54.32 Aligned_cols=146 Identities=14% Similarity=0.084 Sum_probs=94.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCC---------CCCCeEEEeCCCCCCC------CC-----
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMP---------QTENLKYIAGDMFQYI------PP----- 253 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~ri~~~~~D~~~~~------p~----- 253 (360)
.+...||.+|||-=.....+... +++++.=+|.|++++.-+ ...+..++..|+...+ .+
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34567999999988776665321 357888888888775322 2578999999987422 12
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhh-HhHhhhhhh--hcccCCcccCHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTE-AKLLGDTLM--SVSVDGKERTDE 330 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~-~~~~~d~~~--~~~~~g~~~t~~ 330 (360)
--++++-.++.+++.+++.++|+.+.+...| |..+++|.+.+-.... ... ......... ....--...+.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~----gs~l~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP----GSRLAFDYVRPLDGEW--RAGMRAPVYHAARGVDGSGLVFGIDRA 232 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCC----CcEEEEEeccccchhH--HHHHHHHHHHhhhcccccccccCCChh
Confidence 3367788899999999999999999998877 4556677765521111 000 001110000 000001123689
Q ss_pred HHHHHHHHCCCceeEE
Q 018116 331 EWKTLFLDAGFTHYKI 346 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~ 346 (360)
++.++|++.||.....
T Consensus 233 ~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 233 DVAEWLAERGWRASEH 248 (260)
T ss_pred hHHHHHHHCCCeeecC
Confidence 9999999999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00022 Score=57.53 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=66.3
Q ss_pred CCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCCC----C-CccEEEe
Q 018116 196 LGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQYI----P-PADAYFF 259 (360)
Q Consensus 196 ~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~~~----p-~~D~i~~ 259 (360)
+.+||++|+| +|..+..++..-|...+...|- ...++..++ ..++.....+....+ . .||+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 4789999999 4555566676778888999997 666655442 344444444444421 2 5999999
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
..++. =++....+.+.|+..|+| .|+-+++.
T Consensus 110 ADClF--fdE~h~sLvdtIk~lL~p---~g~Al~fs 140 (201)
T KOG3201|consen 110 ADCLF--FDEHHESLVDTIKSLLRP---SGRALLFS 140 (201)
T ss_pred ccchh--HHHHHHHHHHHHHHHhCc---ccceeEec
Confidence 99885 455567889999999999 67755543
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0027 Score=57.98 Aligned_cols=92 Identities=20% Similarity=0.401 Sum_probs=71.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCCC----CCc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ-------------TENLKYIAGDMFQYI----PPA 254 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~ri~~~~~D~~~~~----p~~ 254 (360)
++..++|-+|||.|..+..+.+ +|+ -+++.+|+ |.|++.+++ .+|++++..|.++.. ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4668999999999999988885 684 47999999 999998872 689999999998832 259
Q ss_pred cEEEeccccccCChhH--------HHHHHHHHHHhccCCCCCcEEEEE
Q 018116 255 DAYFFKLVFHAFGDED--------CLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~--------~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
|+++. +++|+. ...+-+-+++.|++ +|.+++.
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQ 406 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQ 406 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEe
Confidence 99876 344432 23566777888998 7877763
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00043 Score=65.20 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=43.1
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ 249 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~ 249 (360)
.++||++||+|.++..+++... +++++|. +.+++.+++ .++++|+.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999998753 8999999 888887764 3479999999855
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.004 Score=50.39 Aligned_cols=96 Identities=16% Similarity=0.285 Sum_probs=65.5
Q ss_pred EEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-C--CC---eEEEeCCCCC---CCC---CccEEEeccccc
Q 018116 199 IVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ-T--EN---LKYIAGDMFQ---YIP---PADAYFFKLVFH 264 (360)
Q Consensus 199 iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-~--~r---i~~~~~D~~~---~~p---~~D~i~~~~~lh 264 (360)
++|+|||+|... .+....+. ..++++|. +.++..... . .. +.+...|... ++. .+|++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 34443333 47888998 766665332 1 11 5778777654 333 49999 544444
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
++.+ ....++++.+.++| +|.+++........
T Consensus 130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~~ 161 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDGL 161 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCCC
Confidence 4443 46789999999999 89888888765543
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.026 Score=47.59 Aligned_cols=141 Identities=11% Similarity=0.075 Sum_probs=96.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hH----HHhcCCCCCCeEEEeCCCCCCC------CCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PH----AVANMPQTENLKYIAGDMFQYI------PPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~ri~~~~~D~~~~~------p~~D~i~~~~ 261 (360)
++++.+||=+|+.+|....+++.-.++-.+.+++. +. .++.+.+.+++--+.+|...|. +..|+|+. .
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-D 152 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ-D 152 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE-e
Confidence 78899999999999999999999888777888887 43 3455666778888889987753 36898874 2
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
+- .++++.-+..++..-|++ ||.+++.--...-....+ ... -..+-.+-|++.||
T Consensus 153 VA---Qp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~d---p~~----------------vf~~ev~kL~~~~f 207 (231)
T COG1889 153 VA---QPNQAEILADNAEFFLKK---GGYVVIAIKARSIDVTAD---PEE----------------VFKDEVEKLEEGGF 207 (231)
T ss_pred cC---CchHHHHHHHHHHHhccc---CCeEEEEEEeecccccCC---HHH----------------HHHHHHHHHHhcCc
Confidence 22 234556678888999999 887776544433322221 000 11222355678899
Q ss_pred ceeEEEeeCC---ceeEEEEe
Q 018116 342 THYKITNVFG---LKSLIEVY 359 (360)
Q Consensus 342 ~~~~~~~~~~---~~~vi~~~ 359 (360)
++.++..+.. .+.+|.++
T Consensus 208 ~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 208 EILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred eeeEEeccCCcccceEEEEEe
Confidence 9999988844 46666654
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0077 Score=50.33 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=85.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeechHHHhc-----------CCC--CCCeEEEeCCCCC-CCC-CccE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDLPHAVAN-----------MPQ--TENLKYIAGDMFQ-YIP-PADA 256 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~-----------a~~--~~ri~~~~~D~~~-~~p-~~D~ 256 (360)
++++.+|+|+=.|.|.+..-++... |.-++..+-..+.... +++ ..+++.+..+... ..| +.|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 7899999999999999998887753 3333333221111111 111 3445555444433 222 4777
Q ss_pred EEeccccccC-----ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHH
Q 018116 257 YFFKLVFHAF-----GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEE 331 (360)
Q Consensus 257 i~~~~~lh~~-----~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e 331 (360)
++....-|++ ....+.++-+.++++||| ||.++|.|.......... .... + ...+..-
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~~---dt~~------~-----~ri~~a~ 188 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGLS---DTIT------L-----HRIDPAV 188 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCChh---hhhh------h-----cccChHH
Confidence 6664444433 244567899999999999 999999998776644331 1101 0 1235667
Q ss_pred HHHHHHHCCCceeEEEee
Q 018116 332 WKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~~ 349 (360)
..+..+.+||+..--..+
T Consensus 189 V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 189 VIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHhhcceeeeeehh
Confidence 778888999986654443
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00065 Score=63.44 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=80.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
.+...++|+|||.|.....+. .|..+++++++. +..+..... .+.-.++.+|+.+ +++ .||.+.+..+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~-~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIA-VFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHH-HhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 345589999999999887666 456788999998 655544432 4556668888877 565 4999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKE 302 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~ 302 (360)
..|.++. ...+++++++++| ||.+++.+.+.....
T Consensus 188 ~~~~~~~--~~~y~Ei~rv~kp---GG~~i~~e~i~~~~~ 222 (364)
T KOG1269|consen 188 VCHAPDL--EKVYAEIYRVLKP---GGLFIVKEWIKTAKL 222 (364)
T ss_pred cccCCcH--HHHHHHHhcccCC---CceEEeHHHHHhhhc
Confidence 9999986 4679999999999 999999888776543
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0007 Score=53.65 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=51.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC---CccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP---PADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p---~~D~i~~~~~l 263 (360)
-++++++|+|||.|-++++.. .+..-.++|+|+ |++++.++. .-++++.+.|+.+..+ -||.++++--+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 467899999999999984443 233446899999 999998875 4567888888877433 38888875544
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.014 Score=50.23 Aligned_cols=140 Identities=13% Similarity=0.095 Sum_probs=89.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hH----HHhcCCCCCCeEEEeCCCCCCC------CCccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PH----AVANMPQTENLKYIAGDMFQYI------PPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~ri~~~~~D~~~~~------p~~D~i~~~ 260 (360)
+.++.+||-+|..+|.+..+++.-- |.-.+.+++. +. .+..+++..+|--+-.|...|. +..|+|+.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~- 149 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ- 149 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE-
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe-
Confidence 6788999999999999999999864 4778888888 53 3445555788888889988752 36998875
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
.+-+ ++++.-++.++...|++ ||.+++.=-...-+...+ ..-...+=.+.|++.|
T Consensus 150 DVaQ---p~Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t~~-------------------p~~vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 150 DVAQ---PDQARIAALNARHFLKP---GGHLIISIKARSIDSTAD-------------------PEEVFAEEVKKLKEEG 204 (229)
T ss_dssp E-SS---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SSSS-------------------HHHHHHHHHHHHHCTT
T ss_pred cCCC---hHHHHHHHHHHHhhccC---CcEEEEEEecCcccCcCC-------------------HHHHHHHHHHHHHHcC
Confidence 3332 34566678889899999 898887543221111100 0001122345667889
Q ss_pred CceeEEEeeCC---ceeEEEE
Q 018116 341 FTHYKITNVFG---LKSLIEV 358 (360)
Q Consensus 341 f~~~~~~~~~~---~~~vi~~ 358 (360)
|++.+...+.. .+.++.+
T Consensus 205 ~~~~e~i~LePy~~dH~~vv~ 225 (229)
T PF01269_consen 205 FKPLEQITLEPYERDHAMVVG 225 (229)
T ss_dssp CEEEEEEE-TTTSTTEEEEEE
T ss_pred CChheEeccCCCCCCcEEEEE
Confidence 99999988844 3555544
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.023 Score=50.14 Aligned_cols=105 Identities=14% Similarity=0.225 Sum_probs=73.7
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-CC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-IP 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-~p 252 (360)
..++..++ ..++.+||+-|.|+|+++-++++.- |.-++.-+|. ..-.+.|.+ .+++.+.+.|+... +.
T Consensus 95 a~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 95 AMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 34556666 7899999999999999999999975 7778888888 444444442 78999999999772 32
Q ss_pred ----CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 253 ----PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 253 ----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
.+|.|++ ++|.+. ..+=.++++|+-. ||++.-+.++.
T Consensus 173 ~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~--g~r~csFSPCI 213 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAPW--EAIPHAAKILKDE--GGRLCSFSPCI 213 (314)
T ss_pred ccccccceEEE-----cCCChh--hhhhhhHHHhhhc--CceEEeccHHH
Confidence 4898876 344432 2244555567751 56777655543
|
|
| >smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0019 Score=47.76 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=48.5
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
-+.|++.|...+++.|+.|||+.+|+ +...+.|.|+.|...|++.+... ++.|++++..
T Consensus 7 ~~~Il~~l~~~~~~~t~~~ia~~l~i---~~~tv~r~l~~L~~~g~l~~~~~-----~~~y~l~~~~ 65 (91)
T smart00346 7 GLAVLRALAEEPGGLTLAELAERLGL---SKSTAHRLLNTLQELGYVEQDGQ-----NGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeecCC-----CCceeecHHH
Confidence 35677788764368999999999999 56899999999999999998742 4779998754
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0047 Score=56.25 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=60.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--C--
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-Y--I-- 251 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~--~-- 251 (360)
+.+++.+. ..++..++|.-+|.|+.+..+++++|+.+++++|. +.+++.+++ .+|+.++.+++.+ . .
T Consensus 10 ~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 10 DEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred HHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 45666665 45678999999999999999999988899999999 988887764 4689999998865 1 1
Q ss_pred ---CCccEEEec
Q 018116 252 ---PPADAYFFK 260 (360)
Q Consensus 252 ---p~~D~i~~~ 260 (360)
..+|.|++-
T Consensus 88 ~~~~~vDgIl~D 99 (305)
T TIGR00006 88 LLVTKIDGILVD 99 (305)
T ss_pred cCCCcccEEEEe
Confidence 247777663
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.01 Score=51.07 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=72.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCCCC---------CCc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMP-------QTENLKYIAGDMFQYI---------PPA 254 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~-------~~~ri~~~~~D~~~~~---------p~~ 254 (360)
.-+.++.+|||.=+|.-+.+++.+.| +-+++.+|+ +...+.+. -...|+++.++..+.. ..|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 44679999999999999999999997 568999998 65554443 3788999999886621 249
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
|+++. -+|-+. -.....++.+.+++ || ++++|.+.
T Consensus 151 DfaFv----DadK~n-Y~~y~e~~l~Llr~---GG-vi~~DNvl 185 (237)
T KOG1663|consen 151 DFAFV----DADKDN-YSNYYERLLRLLRV---GG-VIVVDNVL 185 (237)
T ss_pred eEEEE----ccchHH-HHHHHHHHHhhccc---cc-EEEEeccc
Confidence 99885 334443 44788999999999 55 55555543
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.011 Score=57.43 Aligned_cols=103 Identities=12% Similarity=0.126 Sum_probs=72.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC-CccEEEe-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ---YIP-PADAYFF- 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~---~~p-~~D~i~~- 259 (360)
..++.+|||+++|.|+=+..++....+ ..++..|+ +.-++.+++ ..++.+...|... ..+ .||.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 357789999999999999999998753 57899998 665544432 4567888888654 233 4999984
Q ss_pred ---cc--cc-------ccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 260 ---KL--VF-------HAFGDEDC-------LKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 260 ---~~--~l-------h~~~~~~~-------~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
+. ++ ..|+.++. .+||+++.+.|+| ||+|+-.....
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEECCCC
Confidence 31 22 23333322 5799999999999 88775544433
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0051 Score=51.91 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=64.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCe---------EEEeec-hHHHhcCCC-------CCCeEEEeC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIK---------CTVLDL-PHAVANMPQ-------TENLKYIAG 245 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~-------~~ri~~~~~ 245 (360)
..++.... +.+...|+|-=||+|.+++..+...++.. +++.|+ +.+++.++. ...+.+...
T Consensus 18 ~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~ 95 (179)
T PF01170_consen 18 AALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQW 95 (179)
T ss_dssp HHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE-
T ss_pred HHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEec
Confidence 33444444 45678999999999999988877766666 999999 888876653 567899999
Q ss_pred CCCC-CC-C-CccEEEecccccc-CCh-hHH----HHHHHHHHHhccC
Q 018116 246 DMFQ-YI-P-PADAYFFKLVFHA-FGD-EDC----LKILKKCREAIAG 284 (360)
Q Consensus 246 D~~~-~~-p-~~D~i~~~~~lh~-~~~-~~~----~~~L~~~~~~L~p 284 (360)
|+.+ +. + .+|+|++.--.-. ... .+. .++++.+++.+++
T Consensus 96 D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 96 DARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp -GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred chhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 9987 52 3 4999987543322 122 122 3456777787876
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0013 Score=44.77 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 32 AMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 32 ~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+.+|.--.++.|+..|.. ++|.|+.|||+.+|+ +...+.+.|+.|...|+++...
T Consensus 4 ~~aL~~p~R~~Il~~L~~-~~~~t~~ela~~l~~---~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLAS-NGPMTVSELAEELGI---SQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHTSHHHHHHHHHHHH-CSTBEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHhc-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 455666678888899943 389999999999999 4688999999999999999875
|
... |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.037 Score=49.85 Aligned_cols=138 Identities=14% Similarity=0.125 Sum_probs=87.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec------hHHH-------------------------hcCC--------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL------PHAV-------------------------ANMP-------- 235 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~-------------------------~~a~-------- 235 (360)
...+||-=|||.|.++..|+...+.+++-=+.. .-++ ++.+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 357899999999999999998876555310000 0001 0000
Q ss_pred ------CCCCeEEEeCCCCC--CCC----CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCc
Q 018116 236 ------QTENLKYIAGDMFQ--YIP----PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKED 303 (360)
Q Consensus 236 ------~~~ri~~~~~D~~~--~~p----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~ 303 (360)
..+..+.-.|||.+ ..+ .||+|+.++.+- +...+...|+.|.+.|+| ||.++=+-+..-....
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~---GGvWiNlGPLlYHF~d 304 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKP---GGVWINLGPLLYHFED 304 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccC---CcEEEeccceeeeccC
Confidence 02345556789877 222 499998876554 455688999999999999 8877654443322221
Q ss_pred chhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 304 KHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 304 ~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.+ +. ....+-+.+.+++..+.+.-||++++-..+
T Consensus 305 ~~---------g~---~~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 305 TH---------GV---ENEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred CC---------CC---cccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 11 00 001134679999999999999998876544
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0038 Score=50.35 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=42.4
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ 249 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~ 249 (360)
+++|||||.|.++..+++.+|..+++++|. |.+.+.+++ ..++++....+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999999 888776653 2457777766543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.012 Score=48.86 Aligned_cols=100 Identities=21% Similarity=0.261 Sum_probs=62.7
Q ss_pred HHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeC-CCCCC---------CC--C
Q 018116 187 DCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDLPHAVANMPQTENLKYIAG-DMFQY---------IP--P 253 (360)
Q Consensus 187 ~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~ri~~~~~-D~~~~---------~p--~ 253 (360)
++|. .+.+..+|||+||-.|.+++-..++. |+..+.++|+.+... ...+.++.+ |+.++ .| .
T Consensus 62 dKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 62 DKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred hhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 3443 35678999999999999998888776 999999999844322 233445545 55442 24 3
Q ss_pred ccEEEeccccccC----------ChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 254 ADAYFFKLVFHAF----------GDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 254 ~D~i~~~~~lh~~----------~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.|+|++ .+.+.- .-+-|..+|.-+...+.| +|.++.--
T Consensus 137 VdvVlS-DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p---~g~fvcK~ 184 (232)
T KOG4589|consen 137 VDVVLS-DMAPNATGVRIRDHYRSIELCDSALLFALTLLIP---NGSFVCKL 184 (232)
T ss_pred ccEEEe-ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC---CcEEEEEE
Confidence 787765 223221 223344555555566677 77776533
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0021 Score=49.13 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=37.7
Q ss_pred EEeCCCCchHHHHHHHHCCCC---eEEEeec-h---HHHhcCCC---CCCeEEEeCCCCCC---C--CCccEEEeccccc
Q 018116 200 VDVGGGNGGFSKIISEAFPGI---KCTVLDL-P---HAVANMPQ---TENLKYIAGDMFQY---I--PPADAYFFKLVFH 264 (360)
Q Consensus 200 LDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~ri~~~~~D~~~~---~--p~~D~i~~~~~lh 264 (360)
||||+..|..+..+++..+.. +++++|. + ..-+..++ .++++++.+|..+. . ..+|++++=. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988877644 6899998 6 33333333 67899999998652 2 3699987632 33
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
..+....-++.+.+.|+| ||.+++-|
T Consensus 80 --~~~~~~~dl~~~~~~l~~---ggviv~dD 105 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAP---GGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred --CHHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence 234566778999999999 66555543
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0066 Score=57.26 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=73.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC------C-CccEE
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQYI------P-PADAY 257 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~~~------p-~~D~i 257 (360)
.+++|||+=|=||.++.+.+.. +. +++.+|. ..+++.+++ .+++.|+.+|+++-+ . .||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4899999999999999888876 66 8999999 888888774 578999999998832 1 59999
Q ss_pred Eecc------ccccCC-hhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 258 FFKL------VFHAFG-DEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 258 ~~~~------~lh~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
++-= -=.-|+ ..+-.+++..+.+.|+| ||.++++...
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~~ 338 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSCS 338 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEecC
Confidence 9711 000021 22345788899999999 8888876543
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0054 Score=53.72 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=66.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP--PADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~ 265 (360)
....+|+|||||-=-++.-.....|+..++++|+ ..+++.... ..+.++...|.....| .+|+.++.-++|-
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 3478999999999998888788888899999999 888776653 6778888889988544 4999999999987
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+..++. ..--++.+.++. -.++|..+
T Consensus 184 le~q~~-g~g~~ll~~~~~----~~~vVSfP 209 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALRS----PHVVVSFP 209 (251)
T ss_dssp HHHHST-THHHHHHHHSCE----SEEEEEEE
T ss_pred HHHHhc-chHHHHHHHhCC----CeEEEecc
Confidence 766543 232334444553 45666444
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.011 Score=54.58 Aligned_cols=100 Identities=21% Similarity=0.273 Sum_probs=65.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHH-------CCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC-C-C---
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEA-------FPGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQ-Y-I--- 251 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~-~-~--- 251 (360)
.....+|+|-.||+|.++.++.+. .+..++.|+|+ +.++..++. .....+..+|.+. + .
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456779999999999999988874 37889999999 776654431 3445688899876 2 2
Q ss_pred CCccEEEecccc--ccCCh-----------------hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 252 PPADAYFFKLVF--HAFGD-----------------EDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 252 p~~D~i~~~~~l--h~~~~-----------------~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
..||+|+++--+ ..|.+ ..-..++..+.+.|++ ||++.++-
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEe
Confidence 259999884322 21111 1112478889999999 89876644
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0037 Score=43.39 Aligned_cols=61 Identities=26% Similarity=0.389 Sum_probs=41.7
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
+...|....++.+..+|++.+++ +...+.+.++.|...|+|++.....|+-...|++|+.|
T Consensus 8 vL~~l~~~~~~~t~~~l~~~~~~---~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 8 VLRALAHSDGPMTQSDLAERLGI---SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHT--TS-BEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHccCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 33444422389999999999999 67899999999999999988753222222458988864
|
|
| >PRK10141 DNA-binding transcriptional repressor ArsR; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0038 Score=48.43 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 30 LSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 30 ~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
..+.+|.--.++.|+..|... ++.++.||++.+++ .+..+.+.|+.|...|+++.... |..-.|++++.
T Consensus 8 ~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~l---sqstvS~HL~~L~~AGLV~~~r~---Gr~~~Y~l~~~ 76 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQ---SQPKISRHLALLRESGLLLDRKQ---GKWVHYRLSPH 76 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEE---cCEEEEEECch
Confidence 455677777889999999753 68999999999999 46899999999999999988763 21334888664
|
|
| >smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0051 Score=42.87 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=47.3
Q ss_pred HHHhCcchhhhhCCC-CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 38 AVELGIADIIHSHGR-PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 38 a~~l~lf~~L~~~~~-~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
..+-.|++.|...++ ++++.|||+.+|+ +...+.++|..|...|+|+..+. .++.|+++.
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl---~~~~v~r~L~~L~~~G~V~~~~~----~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNLGL---PKKEVNRVLYSLEKKGKVCKQGG----TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCC----CCCceEeec
Confidence 345678888887533 3999999999999 46899999999999999998752 136777754
|
Helix-turn-helix-containing domain. Also known as Zab. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.015 Score=57.78 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=46.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCC--------CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC--------C
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPG--------IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY--------I 251 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~--------~ 251 (360)
...+|+|.+||+|.++..++...+. ..+.++|+ +.++..++. ...+++...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887642 56889999 777765542 12455666665431 2
Q ss_pred CCccEEEec
Q 018116 252 PPADAYFFK 260 (360)
Q Consensus 252 p~~D~i~~~ 260 (360)
+.||+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 359999884
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0027 Score=40.73 Aligned_cols=44 Identities=30% Similarity=0.480 Sum_probs=38.4
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceec
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSK 88 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~ 88 (360)
++.|...|.. ++.++.||++.+|+ +...+.+.|+.|...|++++
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~---s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGL---SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccc---cchHHHHHHHHHHHCcCeeC
Confidence 5667778876 89999999999999 67999999999999999874
|
One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B .... |
| >COG1414 IclR Transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.005 Score=54.78 Aligned_cols=61 Identities=25% Similarity=0.390 Sum_probs=49.5
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|...+.+.++.|||+++|++ ..-+.|+|..|+..|++++++. +++|++++..-.|
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~glp---ksT~~RlL~tL~~~G~v~~d~~-----~g~Y~Lg~~~~~l 67 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGLP---KSTVHRLLQTLVELGYVEQDPE-----DGRYRLGPRLLEL 67 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCcC---HHHHHHHHHHHHHCCCEEEcCC-----CCcEeehHHHHHH
Confidence 56777787633456799999999994 5889999999999999999973 4689999965433
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.034 Score=57.17 Aligned_cols=112 Identities=11% Similarity=0.103 Sum_probs=73.4
Q ss_pred hHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH------------C------------------------------C
Q 018116 181 AIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA------------F------------------------------P 218 (360)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~------------~------------------------------p 218 (360)
++..++....| ..+...++|-.||+|.+++..+.. | .
T Consensus 177 lAaa~l~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 34455555553 145689999999999999886652 1 1
Q ss_pred CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC----CccEEEecccccc-CC-hhHHHHHHHHHHHhcc
Q 018116 219 GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP----PADAYFFKLVFHA-FG-DEDCLKILKKCREAIA 283 (360)
Q Consensus 219 ~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p----~~D~i~~~~~lh~-~~-~~~~~~~L~~~~~~L~ 283 (360)
..+++++|+ +.+++.++. .+++.|..+|+.+ +.+ .+|+|+++=-... +. .++...+.+.+-+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 236899999 999887764 4679999999976 322 3999887633211 22 2344455555555554
Q ss_pred ---CCCCCcEEEEEee
Q 018116 284 ---GNGERGKVLIMDI 296 (360)
Q Consensus 284 ---p~~~gG~lli~e~ 296 (360)
+ |+++.++..
T Consensus 336 ~~~~---g~~~~llt~ 348 (702)
T PRK11783 336 QQFG---GWNAALFSS 348 (702)
T ss_pred HhCC---CCeEEEEeC
Confidence 5 788877654
|
|
| >PRK11569 transcriptional repressor IclR; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0054 Score=55.55 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=49.4
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|...+.+.++.|||+.+|+ +..-+.|+|..|+..|++.++.. .++|++.+....|
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl---pksTv~RlL~tL~~~G~l~~~~~-----~~~Y~lG~~l~~L 91 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL---PNSTTHRLLTTMQQQGFVRQVGE-----LGHWAIGAHAFIV 91 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCeEecCHHHHHH
Confidence 4566667654478999999999999 46899999999999999998753 5889998865433
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0089 Score=54.01 Aligned_cols=99 Identities=18% Similarity=0.322 Sum_probs=72.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHC--------------------CCCeEEEeec---hHHHhcCCC----------------
Q 018116 196 LGSIVDVGGGNGGFSKIISEAF--------------------PGIKCTVLDL---PHAVANMPQ---------------- 236 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~---------------- 236 (360)
..+||-||||.|.-..+++..+ +.++++.+|+ ..+++....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999998877777766 2257899998 445543210
Q ss_pred -------CCCeEEEeCCCCC-CC---------CCccEEEeccccccC---ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 237 -------TENLKYIAGDMFQ-YI---------PPADAYFFKLVFHAF---GDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 237 -------~~ri~~~~~D~~~-~~---------p~~D~i~~~~~lh~~---~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.-+++|...|+.+ .. +..++|.+.++++.+ +..+-.++|.++...++| |..|+|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence 2357899999987 21 247888887777653 345678899999999999 888888885
Q ss_pred e
Q 018116 297 V 297 (360)
Q Consensus 297 ~ 297 (360)
-
T Consensus 244 p 244 (315)
T PF11312_consen 244 P 244 (315)
T ss_pred C
Confidence 3
|
|
| >PRK10163 DNA-binding transcriptional repressor AllR; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0068 Score=54.79 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=49.4
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|...+.+.|+.|||+.+|+ +..-+.|+|..|+..|++.+++. .++|++++....|
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl---pkStv~RlL~tL~~~G~l~~~~~-----~~~Y~lG~~l~~L 88 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL---PLSTTFRLLKVLQAADFVYQDSQ-----LGWWHIGLGVFNV 88 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCeEEecHHHHHH
Confidence 4566777654468999999999999 46899999999999999988753 5789998865433
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.024 Score=53.47 Aligned_cols=89 Identities=19% Similarity=0.175 Sum_probs=68.3
Q ss_pred CEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C-CCccEEEeccccc
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---I-PPADAYFFKLVFH 264 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~-p~~D~i~~~~~lh 264 (360)
.+|||+-||+|..++..+.+.++ -+++++|+ +.+++.+++ ..++++..+|...- . ..||+|.+- -.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD-Pf- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID-PF- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC-CC-
Confidence 58999999999999999998654 47999999 888877654 34588899988762 1 359999873 22
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
..+ ..++..+.+.+++ ||.|+|.
T Consensus 124 Gs~----~~fld~al~~~~~---~glL~vT 146 (374)
T TIGR00308 124 GTP----APFVDSAIQASAE---RGLLLVT 146 (374)
T ss_pred CCc----HHHHHHHHHhccc---CCEEEEE
Confidence 222 3578888888888 8888887
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0071 Score=53.92 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=49.1
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|.....+.|+.|||+.+|++ ..-+.|+|.-|+..|+++++ +++|++.+....|
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lglp---ksT~~RlL~tL~~~G~l~~~-------~~~Y~lG~~~~~l 70 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGLT---RAAARRFLLTLVELGYVTSD-------GRLFWLTPRVLRL 70 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCcC---HHHHHHHHHHHHHCCCEEeC-------CCEEEecHHHHHH
Confidence 56777776544789999999999994 68999999999999999986 4789999865443
|
Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.019 Score=48.60 Aligned_cols=98 Identities=13% Similarity=0.232 Sum_probs=66.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C----CCccEEEe
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I----PPADAYFF 259 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~----p~~D~i~~ 259 (360)
.+.++||+=||+|.++...+.+. ..+++.+|. +..+..+++ .+++.++..|.+.. . ..||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 57899999999999999888773 347999999 777766553 45799999997651 1 25999987
Q ss_pred ccccccCChhHHHHHHHHHH--HhccCCCCCcEEEEEeeecC
Q 018116 260 KLVFHAFGDEDCLKILKKCR--EAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~--~~L~p~~~gG~lli~e~~~~ 299 (360)
-=-.. .... ..+++..+. .+|++ +.++++|....
T Consensus 121 DPPY~-~~~~-~~~~l~~l~~~~~l~~----~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYA-KGLY-YEELLELLAENNLLNE----DGLIIIEHSKK 156 (183)
T ss_dssp --STT-SCHH-HHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred CCCcc-cchH-HHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence 32211 1211 356677776 78888 66777777655
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK09834 DNA-binding transcriptional activator MhpR; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0084 Score=53.95 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=50.3
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+.|++.|...+++.|..|||+.+|+ +..-+.|+|+.|...|+++++.. ++.|++++....|.
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl---~kstv~RlL~tL~~~g~v~~~~~-----~~~Y~Lg~~~~~l~ 75 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL---HRTTVRRLLETLQEEGYVRRSAS-----DDSFRLTLKVRQLS 75 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEecC-----CCcEEEcHHHHHHH
Confidence 5567777654457999999999999 46899999999999999998752 47899998765444
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.04 Score=50.35 Aligned_cols=147 Identities=16% Similarity=0.200 Sum_probs=91.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeechHHHhcCC----C-----CCCeEEEeCCCCC-CCC------Ccc-
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDLPHAVANMP----Q-----TENLKYIAGDMFQ-YIP------PAD- 255 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~----~-----~~ri~~~~~D~~~-~~p------~~D- 255 (360)
.+...|+-+|||-=.-+-.+- .| ++++.-+|+|++++.=+ + ..++.++..|+++ +++ +||
T Consensus 91 ~g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~ 168 (297)
T COG3315 91 AGIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDR 168 (297)
T ss_pred hcccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCc
Confidence 347899999999654433322 23 57888889999987422 1 3489999999995 443 344
Q ss_pred ----EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee-cCCCCcchh-hhhHhHhhhhhh-hcccCCcccC
Q 018116 256 ----AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV-INEKEDKHQ-VTEAKLLGDTLM-SVSVDGKERT 328 (360)
Q Consensus 256 ----~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~-~~~~~~~~~-~~~~~~~~d~~~-~~~~~g~~~t 328 (360)
++++-.++.+++.++..++|++|.....| |..+ +.+.. ......... ............ .....-....
T Consensus 169 ~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 244 (297)
T COG3315 169 SRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRV-AFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDD 244 (297)
T ss_pred CCCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceE-EEeccccHHHHhcccchhhhhhccccccccccceeccCC
Confidence 47888999999999999999999999988 5544 44443 211110000 000000000000 0000011235
Q ss_pred HHHHHHHHHHCCCceeEE
Q 018116 329 DEEWKTLFLDAGFTHYKI 346 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~ 346 (360)
..++..++.+.||.....
T Consensus 245 ~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 245 PAEIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHHHHhcCEEEEec
Confidence 889999999999987766
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.15 Score=45.92 Aligned_cols=148 Identities=14% Similarity=0.213 Sum_probs=101.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC--CCCeEEEeechHHHh-cCC---C------------------------CCCeEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF--PGIKCTVLDLPHAVA-NMP---Q------------------------TENLKY 242 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~-~a~---~------------------------~~ri~~ 242 (360)
..+...|+-+|||.-.....|...+ +.++++-+|.|.+++ ++. + ..+...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4577899999999999999999988 788999999966553 221 0 356666
Q ss_pred EeCCCCC--CC----------CC-ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhh
Q 018116 243 IAGDMFQ--YI----------PP-ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTE 309 (360)
Q Consensus 243 ~~~D~~~--~~----------p~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~ 309 (360)
+..|+.. .+ .+ .-++++--+|.++++++...+++.+...... +.+++.|.+.+..+-. .
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~Fg----~ 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDRFG----K 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCChHH----H
Confidence 6666653 11 01 3345566688889999999999999988874 8999999998554321 1
Q ss_pred HhHhhhhhhhcc-cCC--cccCHHHHHHHHHHCCCceeEEEee
Q 018116 310 AKLLGDTLMSVS-VDG--KERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 310 ~~~~~d~~~~~~-~~g--~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.+...+.-+.. ..| ...|.+..++-|.++||+.+.+.++
T Consensus 237 -vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 237 -VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred -HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 01111111111 112 2238889999999999998887765
|
|
| >PHA00738 putative HTH transcription regulator | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0091 Score=44.90 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=49.5
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
.+..|++.|.. +++.++.+|++.+++ +...+.+.|+.|...|+|..... |....|++++..
T Consensus 13 tRr~IL~lL~~-~e~~~V~eLae~l~l---SQptVS~HLKvLreAGLV~srK~---Gr~vyY~Ln~~~ 73 (108)
T PHA00738 13 LRRKILELIAE-NYILSASLISHTLLL---SYTTVLRHLKILNEQGYIELYKE---GRTLYAKIRENS 73 (108)
T ss_pred HHHHHHHHHHH-cCCccHHHHHHhhCC---CHHHHHHHHHHHHHCCceEEEEE---CCEEEEEECCCc
Confidence 46778888876 247999999999999 67999999999999999998873 224458877654
|
|
| >PRK15090 DNA-binding transcriptional regulator KdgR; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0098 Score=53.31 Aligned_cols=60 Identities=25% Similarity=0.445 Sum_probs=48.4
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|... ++.|+.|||+.+|++ ..-+.|+|+.|+..|+++++.. .++|++.+....|
T Consensus 17 l~IL~~l~~~-~~l~l~eia~~lgl~---kstv~Rll~tL~~~G~l~~~~~-----~~~Y~lG~~~~~l 76 (257)
T PRK15090 17 FGILQALGEE-REIGITELSQRVMMS---KSTVYRFLQTMKTLGYVAQEGE-----SEKYSLTLKLFEL 76 (257)
T ss_pred HHHHHHhhcC-CCCCHHHHHHHHCcC---HHHHHHHHHHHHHCCCEEEcCC-----CCcEEecHHHHHH
Confidence 4556666653 689999999999994 6899999999999999998742 5889999865433
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.36 Score=45.58 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=63.8
Q ss_pred CCCEEEEeCCCCchHHHHHH--------HH-------CCCCeEEEeechH-----HHhcCC---------------CCCC
Q 018116 195 GLGSIVDVGGGNGGFSKIIS--------EA-------FPGIKCTVLDLPH-----AVANMP---------------QTEN 239 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~-----~~~~a~---------------~~~r 239 (360)
+..+|+|+|||+|..+..+. ++ -|..++..-|+|. +..... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 36689999999997764432 22 2567888888852 111110 0111
Q ss_pred ---eEEEeCCCCCC-CC--CccEEEeccccccCCh--h----------------------------------HHHHHHHH
Q 018116 240 ---LKYIAGDMFQY-IP--PADAYFFKLVFHAFGD--E----------------------------------DCLKILKK 277 (360)
Q Consensus 240 ---i~~~~~D~~~~-~p--~~D~i~~~~~lh~~~~--~----------------------------------~~~~~L~~ 277 (360)
+.-+.|.|+.. +| ..+++++++.||+++. + +...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23345677773 55 5999999999998863 1 11123333
Q ss_pred HHHhccCCCCCcEEEEEeeecCC
Q 018116 278 CREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 278 ~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
=++=|.| ||++++.-..+++
T Consensus 223 Ra~ELvp---GG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKR---GGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhcc---CcEEEEEEecCCC
Confidence 3456788 9999998777654
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.0078 Score=45.33 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=26.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL 227 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 227 (360)
.+...++|||||+|.+.--|.+. +.++.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 45778999999999988777665 778899986
|
; GO: 0008168 methyltransferase activity |
| >PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.013 Score=40.54 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=47.0
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCC--cccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTK--TSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~--~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
|++.|..+++|++..+|++.++....+ +..+++.|++|...|++.+.+ .+.+.+|+.|.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g------~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG------RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC------CcccccCHHHH
Confidence 566777767899999999998764323 478999999999999888765 46678888765
|
|
| >PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.0092 Score=42.73 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=42.1
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
|+..+.. ++.+..+|+..+++ +...+.+.|+.|...|+++.. ++.|.+|+.|..+.
T Consensus 11 IL~~l~~--~~~~~t~i~~~~~L---~~~~~~~yL~~L~~~gLI~~~-------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 11 ILKILSK--GGAKKTEIMYKANL---NYSTLKKYLKELEEKGLIKKK-------DGKYRLTEKGKEFL 66 (77)
T ss_dssp HHHHH-T--T-B-HHHHHTTST-----HHHHHHHHHHHHHTTSEEEE-------TTEEEE-HHHHHHH
T ss_pred HHHHHHc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCcCeeCC-------CCEEEECccHHHHH
Confidence 3444443 79999999999999 579999999999999999775 58999999998544
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.026 Score=51.51 Aligned_cols=66 Identities=26% Similarity=0.343 Sum_probs=49.9
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ 249 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~ 249 (360)
..++++.+. ..+...++|.--|.|+++.++++++|+++++++|. |.+++.+++ .+|+.++..+|.+
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 356666666 67788999999999999999999999999999999 999977653 5889999888744
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.0041 Score=43.33 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=40.5
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..++..|... ++.|+.|||+.+|+ +...+.+.|+-|...|++++.+
T Consensus 10 E~~vy~~Ll~~-~~~t~~eIa~~l~i---~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 10 EAKVYLALLKN-GPATAEEIAEELGI---SRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHH-CHEEHHHHHHHHTS---SHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 55666666532 89999999999999 5799999999999999999986
|
TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.063 Score=51.63 Aligned_cols=94 Identities=20% Similarity=0.338 Sum_probs=63.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hH----HHhcCCCCCCeEEEeCCCCCC---CC-CccEEEeccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PH----AVANMPQTENLKYIAGDMFQY---IP-PADAYFFKLVFH 264 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~ri~~~~~D~~~~---~p-~~D~i~~~~~lh 264 (360)
.....|+|..+|.|+|+.+|... | +.++.. |. .+..+-+..-| =+-+|..++ .| .||++.+.+++.
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydRGLI-G~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDRGLI-GVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhcccc-hhccchhhccCCCCcchhheehhhhhh
Confidence 45689999999999999999754 3 444443 32 22222111111 123355443 34 599999999988
Q ss_pred cCCh-hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 265 AFGD-EDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 265 ~~~~-~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+.+ -+...+|-++-|.|+| ||.++|-|
T Consensus 439 ~~~~rC~~~~illEmDRILRP---~G~~iiRD 467 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRP---GGWVIIRD 467 (506)
T ss_pred hhcccccHHHHHHHhHhhcCC---CceEEEec
Confidence 7653 4667889999999999 99998855
|
; GO: 0008168 methyltransferase activity |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.092 Score=48.61 Aligned_cols=97 Identities=22% Similarity=0.236 Sum_probs=75.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CC-CCccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--YI-PPADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~~-p~~D~i~~~~~ 262 (360)
.++.+|||.=+|.|.+++.+++.- ..+++.+|+ |.+++.+++ .+++..+.||... +. +.+|-|++.+.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 458999999999999999999863 334999999 988877653 5679999999987 23 46999998764
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
- .+.+++-.+.+.+++ ||.+...+.+..+
T Consensus 266 ~------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~ 294 (341)
T COG2520 266 K------SAHEFLPLALELLKD---GGIIHYYEFVPED 294 (341)
T ss_pred C------cchhhHHHHHHHhhc---CcEEEEEeccchh
Confidence 3 234678888888998 7888777766544
|
|
| >cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.042 Score=37.77 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
.+.|..+||+.+|+ +...+.+.|+.|...|++.... .+.|.++|
T Consensus 24 ~~~s~~ela~~~g~---s~~tv~r~l~~L~~~g~i~~~~------~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL---TRETVSRTLKELEEEGLISRRG------RGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC------CCeEEeCC
Confidence 68999999999999 5689999999999999999884 36787764
|
|
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.012 Score=42.76 Aligned_cols=49 Identities=22% Similarity=0.401 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
++.|.+|||+++++ ++..++++++.|...|+++... |-++.|.++...+
T Consensus 24 ~~~s~~eiA~~~~i---~~~~l~kil~~L~~~Gli~s~~----G~~GGy~L~~~~~ 72 (83)
T PF02082_consen 24 KPVSSKEIAERLGI---SPSYLRKILQKLKKAGLIESSR----GRGGGYRLARPPE 72 (83)
T ss_dssp C-BEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET----STTSEEEESS-CC
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHhhCCeeEecC----CCCCceeecCCHH
Confidence 46999999999999 5699999999999999998764 2257898876543
|
(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C. |
| >TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.038 Score=43.08 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=53.4
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++.++..|... ++.|..+||+.+++ +...+.+.++-|...|++++....+|+-.-.|.+|+.|..+..
T Consensus 29 ~q~~iL~~l~~~-~~~t~~ela~~~~~---~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 29 QQWRILRILAEQ-GSMEFTQLANQACI---LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 355677777664 79999999999999 5678999999999999999875322221235999999986654
|
This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.056 Score=47.03 Aligned_cols=99 Identities=17% Similarity=0.323 Sum_probs=73.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCC----CeEEEeec-hHHHhcCC-----CCCC--eEEEeCCCCCC---CCC--ccE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPG----IKCTVLDL-PHAVANMP-----QTEN--LKYIAGDMFQY---IPP--ADA 256 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a~-----~~~r--i~~~~~D~~~~---~p~--~D~ 256 (360)
.+...++|+|.|+..=+..|+..+.. .+++-+|+ ..+++... +.+. +.-+++|+..+ .|+ -.+
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999888888887755 78999999 66655322 2344 44467777552 342 333
Q ss_pred -EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 257 -YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 257 -i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++....|-++++++|..+|.+++.+|+| |-.+++--
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEEec
Confidence 4667899999999999999999999999 77776643
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.031 Score=50.62 Aligned_cols=98 Identities=17% Similarity=0.293 Sum_probs=68.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCC------CCCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQY------IPPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~~------~p~~D~i~ 258 (360)
..+++|||+=|=+|+++.+.+.. ...+++.+|. ..+++.+++ .++++|+..|+++. ...||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 45789999999999999987654 3347999999 888887763 47899999999872 23699999
Q ss_pred ec---cccccCC-hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 259 FK---LVFHAFG-DEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 259 ~~---~~lh~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+- +.=..+. ..+-.++++.+.+.|+| ||.|+.+.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~s 238 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCS 238 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEc
Confidence 81 1111111 12345789999999999 77765543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.015 Score=37.38 Aligned_cols=45 Identities=27% Similarity=0.390 Sum_probs=37.6
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCcee
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFS 87 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~ 87 (360)
.+..|+..|... ++.|..|||+.+|+ +...+.+.++.|...|+++
T Consensus 4 ~~~~Il~~l~~~-~~~t~~ela~~~~i---s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN-PRITQKELAEKLGI---SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC-TTS-HHHHHHHHTS----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCcCcC
Confidence 356778888874 68999999999999 6799999999999999985
|
... |
| >PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.0042 Score=44.83 Aligned_cols=67 Identities=24% Similarity=0.270 Sum_probs=49.4
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCC-cccceecchhhhhh
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEK-EEEAYGLTAISALL 109 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~-~~~~y~~t~~~~~l 109 (360)
++++|...|... +..+..+|.+.+|+ +...+.+.|+.|...|+++....-.++ -...|++|+.|+..
T Consensus 1 vRl~Il~~L~~~-~~~~f~~L~~~l~l---t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~ 68 (80)
T PF13601_consen 1 VRLAILALLYAN-EEATFSELKEELGL---TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREA 68 (80)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHH
T ss_pred CHHHHHHHHhhc-CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHH
Confidence 467778888763 79999999999999 569999999999999999887542211 11249999999843
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.034 Score=53.50 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=63.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--C-C---CCccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ--Y-I---PPADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~--~-~---p~~D~i~~ 259 (360)
..+..+++|+=||.|.++..++++ ..+++++++ +++++.|++ -++++|+.+|.++ + . ..+|.|+.
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 456789999999999999999965 568999999 988887764 4569999999876 2 2 25899886
Q ss_pred ccccccCChhHHH-HHHHHHHHhccCCCCCcEEEE
Q 018116 260 KLVFHAFGDEDCL-KILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 260 ~~~lh~~~~~~~~-~~L~~~~~~L~p~~~gG~lli 293 (360)
- -|..=+. .+++.+.+. +| -..++|
T Consensus 369 D-----PPR~G~~~~~lk~l~~~-~p---~~IvYV 394 (432)
T COG2265 369 D-----PPRAGADREVLKQLAKL-KP---KRIVYV 394 (432)
T ss_pred C-----CCCCCCCHHHHHHHHhc-CC---CcEEEE
Confidence 2 1221122 456666554 44 244444
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.093 Score=46.27 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=62.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC------------CCCeEEEeCCCCCC------CCC-cc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ------------TENLKYIAGDMFQY------IPP-AD 255 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------~~ri~~~~~D~~~~------~p~-~D 255 (360)
...+||++|+|+|..++..+. .....++..|.+..++.... +..+.....+...+ .|. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 456899999999966655444 45788999998766554331 23455555444332 234 89
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
+|+++.++++-.. ...++..++..|.. ++.+++.-..+
T Consensus 165 lilasDvvy~~~~--~e~Lv~tla~ll~~---~~~i~l~~~lr 202 (248)
T KOG2793|consen 165 LILASDVVYEEES--FEGLVKTLAFLLAK---DGTIFLAYPLR 202 (248)
T ss_pred EEEEeeeeecCCc--chhHHHHHHHHHhc---CCeEEEEEecc
Confidence 9999999875432 23455566666877 67555544443
|
|
| >PRK10857 DNA-binding transcriptional regulator IscR; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.04 Score=45.67 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
++.|+++||+++++| ...+.++|+.|...|+|.... |.+|.|.+.....
T Consensus 24 ~~vs~~eIA~~~~ip---~~~l~kIl~~L~~aGLv~s~r----G~~GGy~Lar~p~ 72 (164)
T PRK10857 24 GPVPLADISERQGIS---LSYLEQLFSRLRKNGLVSSVR----GPGGGYLLGKDAS 72 (164)
T ss_pred CcCcHHHHHHHHCcC---HHHHHHHHHHHHHCCCEEeCC----CCCCCeeccCCHH
Confidence 689999999999994 699999999999999999753 2257799866544
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.054 Score=46.29 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=54.0
Q ss_pred CCCEEEEeCCCCchHHHHH---HHHC-CCCeEEEeec-hHHH-hcCCC----CCCeEEEeCCCCCC-----C----CCcc
Q 018116 195 GLGSIVDVGGGNGGFSKII---SEAF-PGIKCTVLDL-PHAV-ANMPQ----TENLKYIAGDMFQY-----I----PPAD 255 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l---~~~~-p~~~~~~~D~-~~~~-~~a~~----~~ri~~~~~D~~~~-----~----p~~D 255 (360)
++..|+++|--.|+-+... ++.+ +..+++++|+ .... ..+.+ .+||+++.||..++ . ..++
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 4689999999888766554 4455 7889999998 3222 22322 49999999998652 1 1123
Q ss_pred E-EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 256 A-YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 256 ~-i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
- +++-..=|.. +.+.+.|+.....+++ |++++|.|...
T Consensus 112 ~vlVilDs~H~~--~hvl~eL~~y~plv~~---G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVILDSSHTH--EHVLAELEAYAPLVSP---GSYLIVEDTII 150 (206)
T ss_dssp SEEEEESS------SSHHHHHHHHHHT--T---T-EEEETSHHH
T ss_pred ceEEEECCCccH--HHHHHHHHHhCccCCC---CCEEEEEeccc
Confidence 2 2222333322 3467889999999999 89998877654
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.048 Score=40.43 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=52.2
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc--ccCCccc-------CHH
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV--SVDGKER-------TDE 330 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~g~~~-------t~~ 330 (360)
..+|-|++.++..++|+++...-+ +++++.- .|.. ..+.+...+ .+.+..| .++
T Consensus 2 mDvLIHYp~~d~~~~l~~La~~t~-----~~~ifTf--AP~T----------~~L~~m~~iG~lFP~~dRsp~i~~~~e~ 64 (97)
T PF07109_consen 2 MDVLIHYPAEDAAQMLAHLASRTR-----GSLIFTF--APRT----------PLLALMHAIGKLFPRPDRSPRIYPHREE 64 (97)
T ss_pred cceEeccCHHHHHHHHHHHHHhcc-----CcEEEEE--CCCC----------HHHHHHHHHhccCCCCCCCCcEEEeCHH
Confidence 356778999999999999988543 5666522 1111 111111111 1222222 689
Q ss_pred HHHHHHHHCCCceeEEEeeCCce--e-EEEEeC
Q 018116 331 EWKTLFLDAGFTHYKITNVFGLK--S-LIEVYP 360 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~~~~~--~-vi~~~~ 360 (360)
++.+.++++||++.+...+..++ + ++|++|
T Consensus 65 ~l~~~l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 65 DLRRALAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred HHHHHHHhCCCeeeecccccCcChHHHHhhccC
Confidence 99999999999999988885433 2 455543
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.045 Score=40.89 Aligned_cols=68 Identities=22% Similarity=0.316 Sum_probs=50.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.+..+||+.+++ +...+.+.++-|...|++++.....++-...|.+|+.+..+..
T Consensus 12 ~~~il~~l~~~-~~~~~~~la~~~~~---s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~~ 79 (101)
T smart00347 12 QFLVLRILYEE-GPLSVSELAKRLGV---SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIE 79 (101)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHHH
Confidence 55667777653 68999999999999 4688999999999999999875211111235888888875553
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.16 Score=44.12 Aligned_cols=146 Identities=10% Similarity=0.121 Sum_probs=87.6
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec--hHHHhcCCCCCCeEEEeC-CCCCC----CC-CccE
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL--PHAVANMPQTENLKYIAG-DMFQY----IP-PADA 256 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~ri~~~~~-D~~~~----~p-~~D~ 256 (360)
.++.|. ....+..+||||+.||+|+..++++ ...++.++|. .+..-..+..+||..+.. |+..- +. ..|+
T Consensus 70 ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 70 ALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred HHHhcC-cCCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCe
Confidence 345554 2357899999999999999998886 2347888998 455556666788877655 44331 22 3667
Q ss_pred EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEE-EeeecCCCCcchhhhhHhHhhhhhhhcc-cCCcccCHHHHHH
Q 018116 257 YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI-MDIVINEKEDKHQVTEAKLLGDTLMSVS-VDGKERTDEEWKT 334 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli-~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g~~~t~~e~~~ 334 (360)
+++--.+ .+ ...+|-.+...+.| ++-++. +-+-+..... ...-.-... .........++.+
T Consensus 148 ~v~DvSF--IS---L~~iLp~l~~l~~~---~~~~v~LvKPQFEagr~---------~v~kkGvv~d~~~~~~v~~~i~~ 210 (245)
T COG1189 148 IVIDVSF--IS---LKLILPALLLLLKD---GGDLVLLVKPQFEAGRE---------QVGKKGVVRDPKLHAEVLSKIEN 210 (245)
T ss_pred EEEEeeh--hh---HHHHHHHHHHhcCC---CceEEEEecchhhhhhh---------hcCcCceecCcchHHHHHHHHHH
Confidence 7653222 23 35778888888998 665543 2222211110 000000000 0112235678888
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
++++.||.+..+..-
T Consensus 211 ~~~~~g~~~~gl~~S 225 (245)
T COG1189 211 FAKELGFQVKGLIKS 225 (245)
T ss_pred HHhhcCcEEeeeEcc
Confidence 999999998887554
|
|
| >smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.034 Score=35.39 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
-+.|..+||+.+++ +...+.+.|+.|.+.|++....
T Consensus 7 ~~~s~~~la~~l~~---s~~tv~~~l~~L~~~g~l~~~~ 42 (48)
T smart00419 7 LPLTRQEIAELLGL---TRETVSRTLKRLEKEGLISREG 42 (48)
T ss_pred eccCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC
Confidence 47899999999999 5688999999999999998873
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.14 Score=43.66 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=70.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCeEEEeCCCCC---CCC--CccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-----TENLKYIAGDMFQ---YIP--PADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~ri~~~~~D~~~---~~p--~~D~i~~~~~l 263 (360)
..+.+||.||=|-|-....+.++-|..++++--.|.+.+..+. .++|....+-..+ ..| .||-|+.--.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5788999999999988887777777666655444888877664 5777777775443 344 49988753322
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
.+ -++...+.+.+.++|+| +|.+-.+....
T Consensus 180 e~--yEdl~~~hqh~~rLLkP---~gv~SyfNg~~ 209 (271)
T KOG1709|consen 180 EL--YEDLRHFHQHVVRLLKP---EGVFSYFNGLG 209 (271)
T ss_pred hH--HHHHHHHHHHHhhhcCC---CceEEEecCcc
Confidence 22 24567889999999999 88776655443
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.54 Score=41.15 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=56.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-----CccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP-----PADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p-----~~D~i~~~~~ 262 (360)
-.+++||=|| -.=..+++++-..+..+++++|+ ..+++..++ .-.|+.+..|+..++| .||+++.-=.
T Consensus 43 L~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 43 LEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred ccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 4678999998 44566777777777789999999 877776553 4459999999999766 4999886321
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
++.+-..-++.+...+|+. +|+..++
T Consensus 122 ---yT~~G~~LFlsRgi~~Lk~--~g~~gy~ 147 (243)
T PF01861_consen 122 ---YTPEGLKLFLSRGIEALKG--EGCAGYF 147 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-S--TT-EEEE
T ss_pred ---CCHHHHHHHHHHHHHHhCC--CCceEEE
Confidence 3445677899999999996 2444433
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK11050 manganese transport regulator MntR; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.12 Score=42.22 Aligned_cols=82 Identities=21% Similarity=0.173 Sum_probs=57.6
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCC
Q 018116 14 ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGG 93 (360)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~ 93 (360)
+..+.++++...-.....-.++. -|+..+.. +++.+..+||+.+++ +...+.++++.|...|++.+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~e~~l~-----~I~~~l~~-~~~~t~~eLA~~l~i---s~stVsr~l~~Le~~GlI~r~~--- 85 (152)
T PRK11050 18 EHVEGFRQVREAHRRELIEDYVE-----LIADLIAE-VGEARQVDIAARLGV---SQPTVAKMLKRLARDGLVEMRP--- 85 (152)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHh-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec---
Confidence 33344455544443333333332 24455554 378999999999999 5689999999999999998864
Q ss_pred CCcccceecchhhhhhh
Q 018116 94 EKEEEAYGLTAISALLI 110 (360)
Q Consensus 94 ~~~~~~y~~t~~~~~l~ 110 (360)
...+.+|+.|..+.
T Consensus 86 ---~~~v~LT~~G~~l~ 99 (152)
T PRK11050 86 ---YRGVFLTPEGEKLA 99 (152)
T ss_pred ---CCceEECchHHHHH
Confidence 46789999887654
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.31 Score=45.00 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=71.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeC-CCCC-CCCC--ccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAG-DMFQ-YIPP--ADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~-D~~~-~~p~--~D~i~~~~ 261 (360)
..++..|||==||||++++...-. +++++|.|+ ..|++-++. -....+... |+.. ++++ +|.|..--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456789999999999999887755 899999999 888888774 234444444 8766 6664 89887611
Q ss_pred ------ccccCC-hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 262 ------VFHAFG-DEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 262 ------~lh~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
...--. ++--.++|+.+.+.|++ ||++.+.-
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~ 310 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAA 310 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEec
Confidence 111111 34456889999999999 89887744
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.35 Score=45.02 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=77.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC----------------CCCeEEEeechH-----HHhcCCC-------CCC--eEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF----------------PGIKCTVLDLPH-----AVANMPQ-------TEN--LKY 242 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~----------------p~~~~~~~D~~~-----~~~~a~~-------~~r--i~~ 242 (360)
..+.-+|+|+||.+|..+..+.... |..++..-|+|. ....... ... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 4566799999999999887755431 345778888852 1111110 122 344
Q ss_pred EeCCCCCC-CC--CccEEEeccccccCCh-------------------------hH------------HHHHHHHHHHhc
Q 018116 243 IAGDMFQY-IP--PADAYFFKLVFHAFGD-------------------------ED------------CLKILKKCREAI 282 (360)
Q Consensus 243 ~~~D~~~~-~p--~~D~i~~~~~lh~~~~-------------------------~~------------~~~~L~~~~~~L 282 (360)
+.+.|+.. +| ..|++++++.||+++. +. ...+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 57888873 45 5999999999998752 01 122333333557
Q ss_pred cCCCCCcEEEEEeeecCCCCcchh----h-h-hHhHhhhhhhhccc----------CCcccCHHHHHHHHHHCC-Ccee
Q 018116 283 AGNGERGKVLIMDIVINEKEDKHQ----V-T-EAKLLGDTLMSVSV----------DGKERTDEEWKTLFLDAG-FTHY 344 (360)
Q Consensus 283 ~p~~~gG~lli~e~~~~~~~~~~~----~-~-~~~~~~d~~~~~~~----------~g~~~t~~e~~~ll~~aG-f~~~ 344 (360)
.| ||++++.-...++...... . . ....+.++..-... .-..++.+|+++.+++.| |.+.
T Consensus 174 v~---GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~ 249 (334)
T PF03492_consen 174 VP---GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIE 249 (334)
T ss_dssp EE---EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEE
T ss_pred cc---CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEE
Confidence 88 9999998888777322110 0 0 01122232211110 012358999999999887 4443
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.25 Score=46.28 Aligned_cols=78 Identities=10% Similarity=0.041 Sum_probs=58.2
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCC---------------------------------------eE
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGI---------------------------------------KC 222 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~---------------------------------------~~ 222 (360)
+..++..-+ +.+...++|==||+|.+++..+...+++ .+
T Consensus 180 AaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 180 AAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 344444445 4455799999999999999887766431 26
Q ss_pred EEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEecc
Q 018116 223 TVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKL 261 (360)
Q Consensus 223 ~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~ 261 (360)
+++|+ +.+++.|+. .+.|+|..+|+.. ..+ .+|+|+++-
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP 307 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP 307 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence 79999 999887763 6889999999976 333 699998853
|
|
| >PRK03902 manganese transport transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.054 Score=43.76 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+++.++.+||+.+++ ++..+.+.++.|...|++.+.. ...|++|+.|..+.
T Consensus 20 ~~~~~~~ela~~l~v---s~~svs~~l~~L~~~Gli~~~~------~~~i~LT~~G~~~a 70 (142)
T PRK03902 20 KGYARVSDIAEALSV---HPSSVTKMVQKLDKDEYLIYEK------YRGLVLTPKGKKIG 70 (142)
T ss_pred CCCcCHHHHHHHhCC---ChhHHHHHHHHHHHCCCEEEec------CceEEECHHHHHHH
Confidence 378999999999999 5689999999999999999764 47799999997654
|
|
| >COG3355 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.042 Score=42.89 Aligned_cols=49 Identities=24% Similarity=0.465 Sum_probs=41.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKV 91 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~ 91 (360)
+..+|-+|-..++|.|+++||+.++. +...+.+-|+-|...|++.+...
T Consensus 29 Dv~v~~~LL~~~~~~tvdelae~lnr---~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 29 DVEVYKALLEENGPLTVDELAEILNR---SRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHHhhcCCcCHHHHHHHHCc---cHHHHHHHHHHHHHcCCeeeeee
Confidence 45566666522489999999999999 67899999999999999999874
|
|
| >TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.07 Score=42.70 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
++.|.++||+.++++ +..+.++|+.|...|+++... |..|.|.++.....+
T Consensus 24 ~~~s~~~ia~~~~ip---~~~l~kil~~L~~~glv~s~~----G~~Ggy~l~~~~~~I 74 (135)
T TIGR02010 24 GPVTLADISERQGIS---LSYLEQLFAKLRKAGLVKSVR----GPGGGYQLGRPAEDI 74 (135)
T ss_pred CcCcHHHHHHHHCcC---HHHHHHHHHHHHHCCceEEEe----CCCCCEeccCCHHHC
Confidence 589999999999994 699999999999999998753 124679887754433
|
This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. |
| >PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.026 Score=39.41 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=36.4
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
|.+.|... +..|..|||..+++ ++..+..+|+.|...|.+.+..
T Consensus 5 i~~~l~~~-~~~S~~eLa~~~~~---s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 5 IRDYLRER-GRVSLAELAREFGI---SPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHHS--SEEHHHHHHHTT-----HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence 45667664 79999999999999 5699999999999999999876
|
FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.097 Score=41.85 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=68.4
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC-----C--CCCeEEEeCCCCC-CCCCc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP-----Q--TENLKYIAGDMFQ-YIPPA 254 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~--~~ri~~~~~D~~~-~~p~~ 254 (360)
.++..+. ..+..+.+|+|.|.|....+.++.. -...+++++ |-.+...+ . ..+..|...|+++ +..+|
T Consensus 63 nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 63 NVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 3444444 4556899999999999888777653 357899999 76665443 1 6789999999988 66667
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
..++++.+-.-++| +-.+++.-|+. +.+++-.-.-.
T Consensus 140 ~~vviFgaes~m~d-----Le~KL~~E~p~---nt~vvacRFPL 175 (199)
T KOG4058|consen 140 RNVVIFGAESVMPD-----LEDKLRTELPA---NTRVVACRFPL 175 (199)
T ss_pred ceEEEeehHHHHhh-----hHHHHHhhCcC---CCeEEEEecCC
Confidence 66665443332332 23345545666 67776654433
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.024 Score=48.47 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=44.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ 249 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~ 249 (360)
....|+|.-||.|+..+.++.++| .++.+|+ |.-+..|+. .+||.|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 557899999999999999998865 6888888 776766664 5799999999977
|
|
| >PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.055 Score=39.95 Aligned_cols=64 Identities=23% Similarity=0.271 Sum_probs=47.3
Q ss_pred cchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 43 IADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
|+..|.. ++....||.+.+ ++ ++..|.+-|+.|.+.|++++....+....-.|++|+.|..|.+
T Consensus 10 IL~~l~~--g~~rf~el~~~l~~i---s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 10 ILRALFQ--GPMRFSELQRRLPGI---SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp HHHHHTT--SSEEHHHHHHHSTTS----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHhcchh---HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHH
Confidence 3445554 799999999999 88 5689999999999999998865311111235999999987764
|
The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D. |
| >PRK11512 DNA-binding transcriptional repressor MarR; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.088 Score=42.60 Aligned_cols=68 Identities=22% Similarity=0.209 Sum_probs=51.3
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.+.++..|... ++.|..|||+.+++ +...+.++++-|...|++.+....+|+-.-.+.+|+.|..+..
T Consensus 42 q~~vL~~l~~~-~~~t~~eLa~~l~i---~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~~ 109 (144)
T PRK11512 42 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICE 109 (144)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHHH
Confidence 34456667653 78999999999999 5699999999999999999875322221223788988886653
|
|
| >PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.1 Score=34.20 Aligned_cols=43 Identities=40% Similarity=0.442 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHH
Q 018116 31 SAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLL 80 (360)
Q Consensus 31 ~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L 80 (360)
.-.+|.+|.+.|-|+.= ...|.+|||+.+|++ ...+...||-.
T Consensus 5 Q~e~L~~A~~~GYfd~P----R~~tl~elA~~lgis---~st~~~~LRra 47 (53)
T PF04967_consen 5 QREILKAAYELGYFDVP----RRITLEELAEELGIS---KSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHHcCCCCCC----CcCCHHHHHHHhCCC---HHHHHHHHHHH
Confidence 34689999999999873 589999999999994 56666666643
|
This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.52 Score=45.32 Aligned_cols=102 Identities=24% Similarity=0.265 Sum_probs=73.7
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcC-----CCCCCeEEEeCCCCC-CCC--CccEEEeccccccC-
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANM-----PQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAF- 266 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-----~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~- 266 (360)
-+++-+|||.-.++..+-+.. .-.++-+|. +.+++.. +......+...|+.. .++ +||+++....++++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 399999999998887776642 225677787 5554433 235678888888877 454 69999999999986
Q ss_pred ChhH-------HHHHHHHHHHhccCCCCCcEEEEEeee--cCCCC
Q 018116 267 GDED-------CLKILKKCREAIAGNGERGKVLIMDIV--INEKE 302 (360)
Q Consensus 267 ~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~--~~~~~ 302 (360)
++++ +-..+..++++|+| ||+.+.+... .+...
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~~~vp~~r 170 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLVQVVPQGR 170 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEeeeeccCCC
Confidence 3332 23468899999999 9998888773 44443
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.29 Score=47.37 Aligned_cols=123 Identities=19% Similarity=0.286 Sum_probs=82.8
Q ss_pred CChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhh-cCCCCEEEEeCCCCchHHHHHHHH----CCCCeEEEeec-
Q 018116 154 KNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKI-FEGLGSIVDVGGGNGGFSKIISEA----FPGIKCTVLDL- 227 (360)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~-~~~~~~iLDvG~G~G~~~~~l~~~----~p~~~~~~~D~- 227 (360)
...|+.+++|+-....|.++.. ..+++..+++ .+....|.-+|+|-|-+..+.+++ ...++..+++-
T Consensus 332 ~~TYetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKN 404 (649)
T KOG0822|consen 332 NQTYETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKN 404 (649)
T ss_pred hhhhhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecC
Confidence 3557888888877777766543 3344444322 123567889999999888776654 24567788887
Q ss_pred hHHHhcCCC------CCCeEEEeCCCCC-CCC--CccEEEeccccccCCh-hHHHHHHHHHHHhccC
Q 018116 228 PHAVANMPQ------TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGD-EDCLKILKKCREAIAG 284 (360)
Q Consensus 228 ~~~~~~a~~------~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~-~~~~~~L~~~~~~L~p 284 (360)
|+++-.... .++|+++..||.+ ..| ..|++++ ..|--+.| +--.+.|.-+-+.|+|
T Consensus 405 PNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkp 470 (649)
T KOG0822|consen 405 PNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKP 470 (649)
T ss_pred cchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCC
Confidence 777654442 7899999999988 333 5898764 34444443 3334668888899999
|
|
| >PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.042 Score=37.29 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=36.7
Q ss_pred CcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 42 GIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 42 ~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.|.+.|....+|.+..|||+.+|+ +....+++|..|...|.+.+..
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gl---s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGL---SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 455666552379999999999999 5788999999999999998754
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.051 Score=51.03 Aligned_cols=48 Identities=25% Similarity=0.440 Sum_probs=37.7
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCC
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDM 247 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~ 247 (360)
+|||+=||.|.++..+++.+ -++++++. +++++.|+. -++++|+.++.
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 89999999999999999874 48999999 899888764 56899988764
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.14 Score=45.06 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=50.8
Q ss_pred HHHHHHhhhhcCCCC--EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEe
Q 018116 183 FIVKDCCRKIFEGLG--SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---------------TENLKYIA 244 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~--~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~ri~~~~ 244 (360)
+.++++.. ++++. +|||.=+|.|..+..++.+ +++++.++. |.+....+. ..|++++.
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 34555565 55655 9999999999999999988 888999998 655432221 14677777
Q ss_pred CCCCCC---CC-CccEEEe
Q 018116 245 GDMFQY---IP-PADAYFF 259 (360)
Q Consensus 245 ~D~~~~---~p-~~D~i~~ 259 (360)
+|..+. .+ .||+|++
T Consensus 152 ~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYL 170 (250)
T ss_pred CcHHHHHhhCCCCCcEEEE
Confidence 776551 22 4777775
|
|
| >TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.084 Score=45.46 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=49.8
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecccc-CCCC-cccceecchhhhhhhcC
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKV-GGEK-EEEAYGLTAISALLIKD 112 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~-~~~~-~~~~y~~t~~~~~l~~~ 112 (360)
..|+..|... ++.|..+||+.+|+ +...+.+.|+.|...|++++... ...| -.-.|++|+.+..+.++
T Consensus 4 ~~IL~~L~~~-~~~t~~eLA~~lgi---s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~~ 73 (203)
T TIGR02702 4 EDILSYLLKQ-GQATAAALAEALAI---SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFPQ 73 (203)
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhccc
Confidence 4566777654 78999999999999 56899999999999999987621 0001 01238999988755543
|
All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.069 Score=51.37 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=46.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ 249 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~ 249 (360)
++....++||=||||.++.++++. -.+++|+++ |+.++.|+. -.+.+|++|-.++
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 667799999999999999999886 568999999 998888764 5789999994444
|
|
| >COG4742 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.11 Score=45.97 Aligned_cols=67 Identities=15% Similarity=0.370 Sum_probs=57.6
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++....+.+|+=.|.. +|.|.+||-..++++ +..+..-++-|...|++.+++ +.|++|+.|..++.
T Consensus 8 ~if~SekRk~lLllL~e--gPkti~EI~~~l~vs---~~ai~pqiKkL~~~~LV~~~~-------~~Y~LS~~G~iiv~ 74 (260)
T COG4742 8 LLFLSEKRKDLLLLLKE--GPKTIEEIKNELNVS---SSAILPQIKKLKDKGLVVQEG-------DRYSLSSLGKIIVE 74 (260)
T ss_pred HHHccHHHHHHHHHHHh--CCCCHHHHHHHhCCC---cHHHHHHHHHHhhCCCEEecC-------CEEEecchHHHHHH
Confidence 34555668888989987 899999999999994 578888999999999999994 99999999987764
|
|
| >COG1321 TroR Mn-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.12 Score=42.25 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++....+||+.++++ +..+..+++-|...|+++... .+.+.+|+.|..++.
T Consensus 22 ~~~~~~~diA~~L~Vs---p~sVt~ml~rL~~~GlV~~~~------y~gi~LT~~G~~~a~ 73 (154)
T COG1321 22 KGFARTKDIAERLKVS---PPSVTEMLKRLERLGLVEYEP------YGGVTLTEKGREKAK 73 (154)
T ss_pred cCcccHHHHHHHhCCC---cHHHHHHHHHHHHCCCeEEec------CCCeEEChhhHHHHH
Confidence 3799999999999995 588999999999999999987 689999999986654
|
|
| >COG1959 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.087 Score=42.99 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
++.|+++||+..+++ +..+.++|..|...|+|+-.. |-+|.|+|..-...+
T Consensus 24 ~~~s~~~IA~~~~is---~~~L~kil~~L~kaGlV~S~r----G~~GGy~Lar~~~~I 74 (150)
T COG1959 24 GPVSSAEIAERQGIS---PSYLEKILSKLRKAGLVKSVR----GKGGGYRLARPPEEI 74 (150)
T ss_pred CcccHHHHHHHhCcC---HHHHHHHHHHHHHcCCEEeec----CCCCCccCCCChHHC
Confidence 389999999999995 599999999999999998876 226889997765443
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.19 Score=45.33 Aligned_cols=66 Identities=23% Similarity=0.302 Sum_probs=55.2
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-----CCCeEEEeCCCCC
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIK-CTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ 249 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~ 249 (360)
.+++++.+. ..+....+|.-=|.|+++..+++++|... ++++|. |.+++.+++ .+|+.++..+|..
T Consensus 12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 455666666 56779999999999999999999998664 999999 999998875 5799999988754
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=93.47 E-value=1.2 Score=37.02 Aligned_cols=120 Identities=17% Similarity=0.185 Sum_probs=75.1
Q ss_pred EeCCCCchHHHHHHHHCC-CCeEEE--eec-hHHHhcCCC---------CCCeEEE-eCCCCC---CC--C--CccEEEe
Q 018116 201 DVGGGNGGFSKIISEAFP-GIKCTV--LDL-PHAVANMPQ---------TENLKYI-AGDMFQ---YI--P--PADAYFF 259 (360)
Q Consensus 201 DvG~G~G~~~~~l~~~~p-~~~~~~--~D~-~~~~~~a~~---------~~ri~~~-~~D~~~---~~--p--~~D~i~~ 259 (360)
=||=|.-+++..|++.++ ..++++ +|. .++.+.-.. ...+.+. ..|..+ .. . .||.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 378888899999999987 555444 554 444433331 2334333 335544 22 2 4999998
Q ss_pred ccccccC-----------ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccC
Q 018116 260 KLVFHAF-----------GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERT 328 (360)
Q Consensus 260 ~~~lh~~-----------~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t 328 (360)
++--... ..+-...+++.+.+.|++ +|.+.|.-. .++.++
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~--------------------------~~~py~ 132 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLK--------------------------DGQPYD 132 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeC--------------------------CCCCCc
Confidence 6543320 112345688889999999 898888332 123345
Q ss_pred HHHHHHHHHHCCCceeEEEee
Q 018116 329 DEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.-++.++.+++||...+..+.
T Consensus 133 ~W~i~~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 133 SWNIEELAAEAGLVLVRKVPF 153 (166)
T ss_pred cccHHHHHHhcCCEEEEEecC
Confidence 556678888899998888766
|
|
| >PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.1 Score=34.91 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=39.4
Q ss_pred CcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 42 GIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 42 ~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.|.+.|... +..|++|||+.+++ ++.-++|=|..|...|++.+..
T Consensus 4 ~Il~~l~~~-~~~s~~ela~~~~V---S~~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 4 QILELLKEK-GKVSVKELAEEFGV---SEMTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHHc-CCEEHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 356677664 89999999999999 5689999999999999999985
|
This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular |
| >TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.1 Score=41.50 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
++.|.++||+.+++ +...+.++|+.|...|++.... |.++.|.++.....+
T Consensus 24 ~~~s~~eia~~~~i---~~~~v~~il~~L~~~gli~~~~----g~~ggy~l~~~~~~i 74 (132)
T TIGR00738 24 GPVSVKEIAERQGI---SRSYLEKILRTLRRAGLVESVR----GPGGGYRLARPPEEI 74 (132)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecc----CCCCCccCCCCHHHC
Confidence 59999999999999 4699999999999999998753 114678887665544
|
This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. |
| >PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.062 Score=36.35 Aligned_cols=47 Identities=26% Similarity=0.380 Sum_probs=38.1
Q ss_pred HhCcchhhhhCCCC--CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRP--ITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~--~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++.++-.|... ++ .|..|||+.+++ +...+.+.++.|...|++++..
T Consensus 7 q~~vL~~l~~~-~~~~~t~~~la~~l~~---~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 7 QFRVLMALARH-PGEELTQSELAERLGI---SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHS-TTSGEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHC-CCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 34455566554 34 899999999999 5699999999999999999875
|
... |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.53 Score=39.65 Aligned_cols=100 Identities=12% Similarity=0.200 Sum_probs=65.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C---CCccEEEec
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I---PPADAYFFK 260 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~---p~~D~i~~~ 260 (360)
.+.++||+=+|+|.++..-+.+. ..+++.+|. ..+...+++ ..++.+...|...- . +.||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 57899999999999999888773 447888998 666555443 57888888888641 1 139999974
Q ss_pred cccc-cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 261 LVFH-AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 261 ~~lh-~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
=-.+ .+-+.+...++-.-..+|+| +.++++|.-..
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD 157 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence 3333 11111222222224577998 55666665544
|
|
| >PRK03573 transcriptional regulator SlyA; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.2 Score=40.38 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=49.2
Q ss_pred CcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 42 GIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 42 ~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++..|...+++.|..+||+.+++ +...+.++++.|...|+|++....+|+-.-.+.+|+.|..+..
T Consensus 35 ~vL~~l~~~~~~~t~~eLa~~l~~---~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 35 VTLHNIHQLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 345556543346899999999999 5689999999999999999975322121224889999886654
|
|
| >TIGR00122 birA_repr_reg BirA biotin operon repressor domain | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.12 Score=36.00 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=43.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
++.++..|.. ++.+..+||+.+|+ +...+.+.++.|.+.|+..... +.+|.+.+..
T Consensus 2 ~~~il~~L~~--~~~~~~eLa~~l~v---S~~tv~~~l~~L~~~g~~i~~~------~~g~~l~~~~ 57 (69)
T TIGR00122 2 PLRLLALLAD--NPFSGEKLGEALGM---SRTAVNKHIQTLREWGVDVLTV------GKGYRLPPPI 57 (69)
T ss_pred hHHHHHHHHc--CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec------CCceEecCcc
Confidence 4567777875 68999999999999 6789999999999999965543 3567665443
|
This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. |
| >TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.2 Score=38.41 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=49.3
Q ss_pred HhCcchhhh--h-CCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 40 ELGIADIIH--S-HGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 40 ~l~lf~~L~--~-~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.++..|. . .+++.|..+||..+++ +...+.++++.|...|++.+....+|.-.-.+.+|+.+..+.
T Consensus 27 q~~vL~~l~~~~~~~~~~t~~eL~~~l~~---~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 27 ELLILYYLGKLENNEGKLTLKEIIKEILI---KQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKI 97 (109)
T ss_pred HHHHHHHHHhhhccCCcCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHH
Confidence 455555555 1 1368999999999999 579999999999999999986532211112377888887554
|
This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047. |
| >smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.23 Score=33.31 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=41.1
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
|+..|.. ++.|..+|++.+++ +...+.+.|+.|...|++..... +....|.++.
T Consensus 2 il~~l~~--~~~~~~~i~~~l~i---s~~~v~~~l~~L~~~g~i~~~~~---~~~~~~~~~~ 55 (66)
T smart00418 2 ILKLLAE--GELCVCELAEILGL---SQSTVSHHLKKLREAGLVESRRE---GKRVYYSLTD 55 (66)
T ss_pred HHHHhhc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeeec---CCEEEEEEch
Confidence 3455553 79999999999999 45889999999999999997652 1134566665
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.96 Score=41.92 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=65.1
Q ss_pred cCCCCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCC---CCCCCC-CccEEEeccccccC
Q 018116 193 FEGLGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGD---MFQYIP-PADAYFFKLVFHAF 266 (360)
Q Consensus 193 ~~~~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D---~~~~~p-~~D~i~~~~~lh~~ 266 (360)
..++.+|+-+|+| .|.++..++++.- .+++++|. ++-.+.+++...-.++... ..+... .+|+++..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 5678899998877 4568888998765 99999999 7777777764444444432 222222 2999886433 1
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
..+...-+.|++ ||+++++-...
T Consensus 240 ------~~~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhc---CCEEEEECCCC
Confidence 346677788999 99999987764
|
|
| >TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.12 Score=44.40 Aligned_cols=59 Identities=20% Similarity=0.358 Sum_probs=46.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
++.++..|... ++.+..|||+.+++ ++..+.+.|+.|...|++.+.+. ....|.+|+.|
T Consensus 145 ~~~IL~~l~~~-g~~s~~eia~~l~i---s~stv~r~L~~Le~~GlI~r~~~----r~~~~~lT~~G 203 (203)
T TIGR01884 145 ELKVLEVLKAE-GEKSVKNIAKKLGK---SLSTISRHLRELEKKGLVEQKGR----KGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEcC----CccEEEeCCCC
Confidence 45666777653 68999999999999 56889999999999999999851 13568888754
|
Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=92.62 E-value=2.4 Score=40.16 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=66.2
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCch----HHHHHHHHC---CCCeEEEeechH-----HHhcCC--------C-CCCeE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGG----FSKIISEAF---PGIKCTVLDLPH-----AVANMP--------Q-TENLK 241 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~----~~~~l~~~~---p~~~~~~~D~~~-----~~~~a~--------~-~~ri~ 241 (360)
+.+++.+. -...-+|+|+|.|.|. +...|+.+- |.+++|+++.|. .++.+. . .-.++
T Consensus 100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 45667776 5577899999999995 444455543 788999999832 222221 1 33455
Q ss_pred EEeC--CCCCCC--------C-CccEEEeccccccCChh------HHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 242 YIAG--DMFQYI--------P-PADAYFFKLVFHAFGDE------DCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 242 ~~~~--D~~~~~--------p-~~D~i~~~~~lh~~~~~------~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
|... +-.++. + ++=+|-+...||++.++ ....+|+.++ .|+| -.+++.|.-.+.+
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P----~vvv~~E~ea~~n 249 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP----KVVVLVEQEADHN 249 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC----CEEEEEeecCCCC
Confidence 5542 211111 1 23334556677988632 2445777776 5899 5777777765543
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.067 Score=35.84 Aligned_cols=46 Identities=30% Similarity=0.419 Sum_probs=37.7
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+.++..|... ++.+..+||+.+++ +...+.++++.|...|++++..
T Consensus 6 ~~iL~~l~~~-~~~~~~~la~~~~~---~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 6 FRILRILYEN-GGITQSELAEKLGI---SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHH-SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecc
Confidence 3344455553 68999999999999 6799999999999999999875
|
This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A .... |
| >smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.21 Score=37.10 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=40.2
Q ss_pred HHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 56 LSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 56 ~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+.+||+.+++ +...+.+.++.|...|++.+.. +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i---s~stvs~~l~~L~~~glI~r~~------~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV---SPPTVTQMLKKLEKDGLVEYEP------YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEcC------CCceEechhHHHHH
Confidence 4689999999 5689999999999999999986 46899999887654
|
iron dependent repressor |
| >PRK11920 rirA iron-responsive transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.18 Score=41.23 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcCCCCChhhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSG 123 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~ 123 (360)
.+.|..+||+..++ ++..+.++|..|...|+++-.. |-.|+|+++.....+ ++.+++..
T Consensus 23 ~~~s~~eIA~~~~i---s~~~L~kIl~~L~~aGlv~S~r----G~~GGy~La~~p~eI------tl~dIi~a 81 (153)
T PRK11920 23 KLSRIPEIARAYGV---SELFLFKILQPLVEAGLVETVR----GRNGGVRLGRPAADI------SLFDVVRV 81 (153)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec----CCCCCeeecCCHHHC------cHHHHHHH
Confidence 57899999999999 4699999999999999998876 235789987655433 35555543
|
|
| >PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.14 Score=35.29 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+-|-|+.|||+.+|+. ++..+.+.|+.|...|++.+..
T Consensus 23 G~~Pt~rEIa~~~g~~--S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 23 GYPPTVREIAEALGLK--STSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp SS---HHHHHHHHTSS--SHHHHHHHHHHHHHTTSEEEGC
T ss_pred CCCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCcCccCCC
Confidence 4578999999999995 5789999999999999999885
|
The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A. |
| >cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.21 Score=34.79 Aligned_cols=57 Identities=30% Similarity=0.466 Sum_probs=43.1
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
+..|+..+.. ++.+..||++.+++ +...+.+.|+.|.+.|++.....+ ....|++++
T Consensus 9 ~~~il~~l~~--~~~~~~ei~~~~~i---~~~~i~~~l~~L~~~g~i~~~~~~---~~~~~~~~~ 65 (78)
T cd00090 9 RLRILRLLLE--GPLTVSELAERLGL---SQSTVSRHLKKLEEAGLVESRREG---RRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHH--CCcCHHHHHHHHCc---CHhHHHHHHHHHHHCCCeEEEEec---cEEEEEeCC
Confidence 3445566655 34999999999999 568899999999999999986521 135577776
|
ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. |
| >PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.17 Score=33.32 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=32.9
Q ss_pred CcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 018116 42 GIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMG 84 (360)
Q Consensus 42 ~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g 84 (360)
.|+..|..+++++|.++||+.+++ +.+-+.+-+..|...|
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~v---S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGV---SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCC
Confidence 455667443467999999999999 6799999999999999
|
The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A .... |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.54 Score=39.68 Aligned_cols=85 Identities=19% Similarity=0.327 Sum_probs=60.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEeCCCCCC-C----------CC-
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ---------TENLKYIAGDMFQY-I----------PP- 253 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~ri~~~~~D~~~~-~----------p~- 253 (360)
+...|+-+|||-=.....+....+++++.-+|.|++++.-++ ..+.+++..|+.++ + ++
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 445999999999999999988878899999999988764332 23467899999862 1 12
Q ss_pred ccEEEeccccccCChhHHHHHHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCR 279 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~ 279 (360)
.-++++-.++.+++.+++..+|+.++
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 44677888899999999998888763
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.35 Score=44.00 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=41.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeC----CCCCCC----CCccEE
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------TENLKYIAG----DMFQYI----PPADAY 257 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~----D~~~~~----p~~D~i 257 (360)
...++||||+|....=--|..+..++++++.|+ +..++.|++ .++|+++.. +++... ..||+.
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 357999999998754323333334899999999 888887764 578988755 344422 149999
Q ss_pred EeccccccCCh
Q 018116 258 FFKLVFHAFGD 268 (360)
Q Consensus 258 ~~~~~lh~~~~ 268 (360)
+|+=-+|.-.+
T Consensus 182 mCNPPFy~s~~ 192 (299)
T PF05971_consen 182 MCNPPFYSSQE 192 (299)
T ss_dssp EE-----SS--
T ss_pred ecCCccccChh
Confidence 98777765333
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.32 Score=45.35 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=71.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec---hHHHhcCC-------------CCCCeEEEeCCCCCC------
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL---PHAVANMP-------------QTENLKYIAGDMFQY------ 250 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~-------------~~~ri~~~~~D~~~~------ 250 (360)
..+...+.|+|+|.|.....++.-.....-+|+.+ |.-+.... +...++.+.+++..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 56778999999999999888776655555666655 22221111 156688899998763
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 251 IPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 251 ~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
.+.+++|+++++.. +++.. .=+.++..-+++ |.+++-.++..+.+
T Consensus 270 ~~eatvi~vNN~~F--dp~L~-lr~~eil~~ck~---gtrIiS~~~L~~r~ 314 (419)
T KOG3924|consen 270 QTEATVIFVNNVAF--DPELK-LRSKEILQKCKD---GTRIISSKPLVPRP 314 (419)
T ss_pred hhcceEEEEecccC--CHHHH-HhhHHHHhhCCC---cceEeccccccccc
Confidence 24699999999885 44433 334477777788 89999988888743
|
|
| >TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.17 Score=40.08 Aligned_cols=46 Identities=15% Similarity=0.354 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
++.|+.|||+++++ +...+.++|+.|...|++..... ..+.|.+..
T Consensus 24 ~~~s~~eia~~l~i---s~~~v~~~l~~L~~~Gli~~~~g----~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL---NAPTVSKILKQLSLAGIVTSKRG----VEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecCC----CCCChhhcC
Confidence 68999999999999 56999999999999999987531 145677744
|
The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.67 Score=40.07 Aligned_cols=93 Identities=23% Similarity=0.348 Sum_probs=64.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC----C-C-C---eEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CC--
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF----P-G-I---KCTVLDLPHAVANMPQTENLKYIAGDMFQY---------IP-- 252 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~----p-~-~---~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~---------~p-- 252 (360)
+.+..+++|+-+-.|.++..+.+++ + . . +++.+|+..|... +.|.-+.+|+..+ +.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCCHhHHHHHHHHhCCC
Confidence 5678899999999999999998875 2 1 1 2888998666443 3466677888662 12
Q ss_pred CccEEEecc-----ccccCCh----hHHHHHHHHHHHhccCCCCCcEEE
Q 018116 253 PADAYFFKL-----VFHAFGD----EDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 253 ~~D~i~~~~-----~lh~~~~----~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
.+|+|++-. -+|+++. +-....|+-...+|+| ||.++
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FV 160 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFV 160 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeee
Confidence 499999843 5676654 2234456666788999 77764
|
|
| >cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.49 Score=32.05 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 54 ITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 54 ~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.|..+||+.+++ +...+.+.|..|...|+++...
T Consensus 26 ~~~~~la~~~~i---s~~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 26 PSERELAEELGV---SRTTVREALRELEAEGLVERRP 59 (66)
T ss_pred CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 459999999999 5688999999999999998764
|
This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.098 Score=39.75 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=42.4
Q ss_pred CccEEEeccccc----cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccC
Q 018116 253 PADAYFFKLVFH----AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERT 328 (360)
Q Consensus 253 ~~D~i~~~~~lh----~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t 328 (360)
.||+|+|..|.- ++.|+-...+++++++.|+| ||.+ |+|+-.=. .+........ .+......-...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p---GG~l-ilEpQ~w~-----sY~~~~~~~~-~~~~n~~~i~lr 70 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP---GGIL-ILEPQPWK-----SYKKAKRLSE-EIRENYKSIKLR 70 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE---EEEE-EEE---HH-----HHHTTTTS-H-HHHHHHHH----
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC---CCEE-EEeCCCcH-----HHHHHhhhhH-HHHhHHhceEEC
Confidence 389999877642 24688899999999999999 5555 54532110 0000000000 000000111234
Q ss_pred HHHHHHHHHH--CCCceeEEEeeC
Q 018116 329 DEEWKTLFLD--AGFTHYKITNVF 350 (360)
Q Consensus 329 ~~e~~~ll~~--aGf~~~~~~~~~ 350 (360)
++++.++|.+ .||...+....+
T Consensus 71 P~~F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 71 PDQFEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp GGGHHHHHTSTTT---EEEEE---
T ss_pred hHHHHHHHHhcccceEEEEEcccC
Confidence 5678888887 599988765553
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG2345 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.17 Score=43.62 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=49.8
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccC-CCC-cccceecchhhhhhhcCC
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVG-GEK-EEEAYGLTAISALLIKDK 113 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~-~~~-~~~~y~~t~~~~~l~~~~ 113 (360)
-.|...|.++ +|+|+.|||+++|++ +..+++.|+.|.+.|+++..... .-| -.-.|++|..+....++.
T Consensus 14 ~~il~lL~~~-g~~sa~elA~~Lgis---~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f~~~ 84 (218)
T COG2345 14 ERILELLKKS-GPVSADELAEELGIS---PMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQFPKR 84 (218)
T ss_pred HHHHHHHhcc-CCccHHHHHHHhCCC---HHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhcchh
Confidence 3455566654 899999999999994 68999999999999999775310 000 012499999887654443
|
|
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.34 Score=32.12 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=31.9
Q ss_pred CCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPI-TLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~-t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
..+ |..+||+.+++ +...+.+.|+.|...|++....
T Consensus 18 ~~l~s~~~la~~~~v---s~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQLGV---SRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 455 89999999999 5689999999999999998765
|
|
| >COG1497 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.16 Score=43.88 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=53.6
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcCCCCChhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPL 120 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~ 120 (360)
+.|+..|..........|||..+|+. ++.+...++-|+..|++++.+ .++|..|..+.....+.-..++.+
T Consensus 13 fqIL~ei~~~qp~v~q~eIA~~lgiT---~QaVsehiK~Lv~eG~i~~~g------R~~Y~iTkkG~e~l~~~~~dlr~f 83 (260)
T COG1497 13 FQILSEIAVRQPRVKQKEIAKKLGIT---LQAVSEHIKELVKEGLIEKEG------RGEYEITKKGAEWLLEQLSDLRRF 83 (260)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHcCCC---HHHHHHHHHHHHhccceeecC------CeeEEEehhHHHHHHHHHHHHHHH
Confidence 33444444333688999999999995 599999999999999999976 579999999985444332234444
Q ss_pred h
Q 018116 121 V 121 (360)
Q Consensus 121 ~ 121 (360)
.
T Consensus 84 ~ 84 (260)
T COG1497 84 S 84 (260)
T ss_pred H
Confidence 3
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.45 Score=42.74 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=67.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CC--CCcc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---YI--PPAD 255 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~~--p~~D 255 (360)
....++++-||+|-|.+....++. +.+ +...+|+ ..+++.-++ ..+|.+.-||-+. .. ..||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 356789999999999999888876 544 5677787 666654432 6899999998766 23 3599
Q ss_pred EEEeccccccCChh--HHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 256 AYFFKLVFHAFGDE--DCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 256 ~i~~~~~lh~~~~~--~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+|+.-..=-..+.. =...+..-+.++|++ ||.++...-+
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~ec 238 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQGEC 238 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEecce
Confidence 98862210001111 012456667789999 8888776543
|
|
| >PRK11014 transcriptional repressor NsrR; Provisional | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.3 Score=39.33 Aligned_cols=62 Identities=13% Similarity=0.274 Sum_probs=45.8
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
.+|++.+.++.+ .. +.+.|..+||+.+|+ +...+++.|+.|...|+++... |-+++|.++..
T Consensus 9 YAl~~~i~la~~---~~-g~~~s~~~ia~~~~i---s~~~vrk~l~~L~~~Glv~s~~----G~~GG~~l~~~ 70 (141)
T PRK11014 9 YGLRALIYMASL---PE-GRMTSISEVTEVYGV---SRNHMVKIINQLSRAGYVTAVR----GKNGGIRLGKP 70 (141)
T ss_pred HHHHHHHHHhcC---CC-CCccCHHHHHHHHCc---CHHHHHHHHHHHHhCCEEEEec----CCCCCeeecCC
Confidence 345555554432 22 357899999999999 5689999999999999998875 22467888653
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.79 Score=35.86 Aligned_cols=86 Identities=20% Similarity=0.341 Sum_probs=47.6
Q ss_pred CCCCEEEEeCCCCch-HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCC----CCccEEEeccccccCC
Q 018116 194 EGLGSIVDVGGGNGG-FSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYI----PPADAYFFKLVFHAFG 267 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~----p~~D~i~~~~~lh~~~ 267 (360)
....+|++||-|.=. .+..|.+. ++.++++|. +. .+ ...+.++.-|+++|- .++|+|++.+ |
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiR-----P 79 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIR-----P 79 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES------
T ss_pred CCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---cc--ccCcceeeecccCCCHHHhcCCcEEEEeC-----C
Confidence 345699999998765 44555555 589999999 55 22 367899999999963 2799999876 4
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 268 DEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+.+...-+-++++.. |.-++|.-.
T Consensus 80 P~El~~~il~lA~~v-----~adlii~pL 103 (127)
T PF03686_consen 80 PPELQPPILELAKKV-----GADLIIRPL 103 (127)
T ss_dssp -TTSHHHHHHHHHHH-----T-EEEEE-B
T ss_pred ChHHhHHHHHHHHHh-----CCCEEEECC
Confidence 555556666666655 455666443
|
; PDB: 2K4M_A. |
| >smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.3 Score=31.44 Aligned_cols=44 Identities=18% Similarity=0.366 Sum_probs=36.7
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+++.|... ++.+..+|++.+++ +...+.+.|..|...|++.+..
T Consensus 5 il~~l~~~-~~~s~~~l~~~l~~---s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 5 ILELLAQQ-GKVSVEELAELLGV---SEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred HHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEee
Confidence 44455543 68999999999999 5689999999999999999874
|
|
| >COG4189 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.33 Score=41.79 Aligned_cols=55 Identities=22% Similarity=0.420 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 31 SAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 31 ~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
..++|...++..|++.|... +|+.+.|||+++|+ ++.-+..-+..|...|+++-.
T Consensus 16 v~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgL---pqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 16 VLKALASKVRVAILQLLHRK-GPLNVNEIAEALGL---PQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCC---chhhhhhhHHHHHhcCceeee
Confidence 44688888999999999875 79999999999999 468899999999999999654
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=91.17 E-value=3.1 Score=31.92 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=54.6
Q ss_pred CCCEEEEeCCCCchHH-HHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCC----CCccEEEeccccccCCh
Q 018116 195 GLGSIVDVGGGNGGFS-KIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYI----PPADAYFFKLVFHAFGD 268 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~-~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~----p~~D~i~~~~~lh~~~~ 268 (360)
...+|++||-|.=... ..|+++ ++.++.+|+ +. .+ ...+++...|+++|- .++|+|++.. |+
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~---~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pp 80 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK---TA--PEGLRFVVDDITNPNISIYEGADLIYSIR-----PP 80 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc---cC--cccceEEEccCCCccHHHhhCccceeecC-----CC
Confidence 4569999998876544 444444 588999998 44 33 367899999999862 3699998765 55
Q ss_pred hHHHHHHHHHHHhcc
Q 018116 269 EDCLKILKKCREAIA 283 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~ 283 (360)
++....+-.++++++
T Consensus 81 pEl~~~ildva~aVg 95 (129)
T COG1255 81 PELQSAILDVAKAVG 95 (129)
T ss_pred HHHHHHHHHHHHhhC
Confidence 666666666776664
|
|
| >COG4190 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.28 Score=38.20 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=43.7
Q ss_pred HHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 37 GAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 37 ~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+=-.+.|.+.|+.. +|.|..|+|+..|- +...+.|-|+.|...|++..+.
T Consensus 63 sp~nleLl~~Ia~~-~P~Si~ElAe~vgR---dv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 63 SPRNLELLELIAQE-EPASINELAELVGR---DVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred ChhHHHHHHHHHhc-CcccHHHHHHHhCc---chHHHHHHHHHHHhcCeEEEec
Confidence 33457788888875 89999999999999 6789999999999999999886
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.91 E-value=1.3 Score=39.51 Aligned_cols=193 Identities=11% Similarity=0.096 Sum_probs=108.0
Q ss_pred CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcCCCCChhhhhhhhcC----c-cc
Q 018116 55 TLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILD----P-EN 129 (360)
Q Consensus 55 t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~----~-~~ 129 (360)
+.-.|+....+ +.+.+..+++.|...|++..++ +...+|..|..++..- .+...-.+-+. . ..
T Consensus 36 d~wkIvd~s~~---plp~v~~i~~~l~~egiv~~~~-------g~v~~TekG~E~~e~~--gi~~~~~~~C~~CeGrgi~ 103 (354)
T COG1568 36 DFWKIVDYSDL---PLPLVASILEILEDEGIVKIEE-------GGVELTEKGEELAEEL--GIKKKYDYTCECCEGRGIS 103 (354)
T ss_pred chHhhhhhccC---CchHHHHHHHHHHhcCcEEEec-------CcEeehhhhHHHHHHh--CCCccccccccCcCCcccc
Confidence 88889988888 4789999999999999999995 6699999999887632 22221111100 0 00
Q ss_pred cchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchH
Q 018116 130 IFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGF 209 (360)
Q Consensus 130 ~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~ 209 (360)
...+..|-+- +-++....|+-...|.+....-...... ++=.+..+...++.|+-+| .--.+
T Consensus 104 l~~f~dll~k----------------f~eiaK~RP~p~~~yDQgfvTpEttv~R-v~lm~~RGDL~gK~I~vvG-DDDLt 165 (354)
T COG1568 104 LQAFKDLLEK----------------FREIAKDRPEPLHQYDQGFVTPETTVSR-VALMYSRGDLEGKEIFVVG-DDDLT 165 (354)
T ss_pred chhHHHHHHH----------------HHHHHhcCCCcchhcccccccccceeee-eeeeccccCcCCCeEEEEc-Cchhh
Confidence 1112222211 1222222232222222211111000000 0000111134567899998 55566
Q ss_pred HHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-----CccEEEeccccccCChhH----HHH
Q 018116 210 SKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP-----PADAYFFKLVFHAFGDED----CLK 273 (360)
Q Consensus 210 ~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p-----~~D~i~~~~~lh~~~~~~----~~~ 273 (360)
+++++-..---++.++|+ ...+....+ .++++.+..|..+|+| .||+++- ++++ ...
T Consensus 166 sia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT-------DPpeTi~alk~ 238 (354)
T COG1568 166 SIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFIT-------DPPETIKALKL 238 (354)
T ss_pred HHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeec-------CchhhHHHHHH
Confidence 666655443447888888 655544332 5779999999999887 4999763 2222 334
Q ss_pred HHHHHHHhccC
Q 018116 274 ILKKCREAIAG 284 (360)
Q Consensus 274 ~L~~~~~~L~p 284 (360)
+|.+=...|+.
T Consensus 239 FlgRGI~tLkg 249 (354)
T COG1568 239 FLGRGIATLKG 249 (354)
T ss_pred HHhccHHHhcC
Confidence 55555567775
|
|
| >PRK10870 transcriptional repressor MprA; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.51 Score=39.60 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=50.3
Q ss_pred hCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 41 LGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 41 l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.++-.|... +++.|..|||+.+++ +...+.++++-|...|++++....+|+-.-.+.+|+.|..+..
T Consensus 58 ~~iL~~L~~~~~~~it~~eLa~~l~l---~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 58 FMALITLESQENHSIQPSELSCALGS---SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 4455555432 257899999999999 5689999999999999999976432221234889999986654
|
|
| >PRK06266 transcription initiation factor E subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.44 Score=40.04 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=40.1
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
...|+++|..+ +++|.++||..+|+ +...++++|..|...|++...
T Consensus 24 ~~~Vl~~L~~~-g~~tdeeLA~~Lgi---~~~~VRk~L~~L~e~gLv~~~ 69 (178)
T PRK06266 24 GFEVLKALIKK-GEVTDEEIAEQTGI---KLNTVRKILYKLYDARLADYK 69 (178)
T ss_pred HhHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEe
Confidence 34588888765 79999999999999 578999999999999999854
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.091 Score=42.41 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=37.6
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+.|+|++.+++.|++-++-...++.+++.||| ||.|-+.-+
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvP 87 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVP 87 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcC
Confidence 59999999999999999999999999999999 999887654
|
|
| >PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.47 Score=34.84 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=48.7
Q ss_pred HHHHhCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHH----------HHHHhCCce-eccccCCCCcccceecch
Q 018116 37 GAVELGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFM----------RLLVHMGLF-SKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 37 ~a~~l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL----------~~L~~~g~l-~~~~~~~~~~~~~y~~t~ 104 (360)
.=++.+++..|... +.+.++.|||..++++ +..+..-| +.|+.+|++ .+... .+...|++|+
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~~---~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~---~g~k~Y~lT~ 81 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGSD---YSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEK---GGFKYYRLTE 81 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCCC---HHHHHHHHhcCCCCcCcchhHHHcCCeeEeeec---CCeeEEEeCh
Confidence 44577788888765 4799999999999995 45555555 569999999 44331 1134699999
Q ss_pred hhhhhh
Q 018116 105 ISALLI 110 (360)
Q Consensus 105 ~~~~l~ 110 (360)
.+..++
T Consensus 82 ~G~~~~ 87 (90)
T PF07381_consen 82 KGKRIA 87 (90)
T ss_pred hhhhHH
Confidence 887544
|
The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator. |
| >COG1733 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=90.49 E-value=1 Score=35.12 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=62.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCceeccccCCC
Q 018116 16 FEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALK-IQPTKTSNLFRFMRLLVHMGLFSKTKVGGE 94 (360)
Q Consensus 16 ~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~-~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~ 94 (360)
.-+.....+.+.+-|...+|+...+ ++.-..||.+.++ + ++..|.+-|+.|...|++++..-.+-
T Consensus 10 ~c~~~~~l~~ig~kW~~lIl~~L~~-----------g~~RF~eL~r~i~~I---s~k~Ls~~Lk~Le~~Glv~R~~~~~~ 75 (120)
T COG1733 10 PCPVEEALEVIGGKWTLLILRDLFD-----------GPKRFNELRRSIGGI---SPKMLSRRLKELEEDGLVERVVYPEE 75 (120)
T ss_pred CCCHHHHHHHHcCccHHHHHHHHhc-----------CCCcHHHHHHHcccc---CHHHHHHHHHHHHHCCCEEeeecCCC
Confidence 4457778888888888888776533 6888999999998 8 56999999999999999998753111
Q ss_pred Ccccceecchhhhhhhc
Q 018116 95 KEEEAYGLTAISALLIK 111 (360)
Q Consensus 95 ~~~~~y~~t~~~~~l~~ 111 (360)
.-.-.|++|+.|..|.+
T Consensus 76 PprveY~LT~~G~~L~~ 92 (120)
T COG1733 76 PPRVEYRLTEKGRDLLP 92 (120)
T ss_pred CceeEEEEhhhHHHHHH
Confidence 11245999999987664
|
|
| >PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.54 Score=40.73 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=47.3
Q ss_pred hhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 45 DIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 45 ~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
..+.. ...+|..|||+.+++ +...+.+.|+.|...|++++... .....+++|+.+..+..
T Consensus 14 g~l~~-~~~IS~~eLA~~L~i---S~~Tvsr~Lk~LEe~GlI~R~~~---~r~~~v~LTekG~~ll~ 73 (217)
T PRK14165 14 GAVNN-TVKISSSEFANHTGT---SSKTAARILKQLEDEGYITRTIV---PRGQLITITEKGLDVLY 73 (217)
T ss_pred hccCC-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEEc---CCceEEEECHHHHHHHH
Confidence 34543 257999999999999 67999999999999999998752 11466999999985543
|
|
| >PRK06474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.33 Score=40.80 Aligned_cols=73 Identities=23% Similarity=0.356 Sum_probs=53.2
Q ss_pred HHHHHHHHHhCcchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCC--CCcccceecchhhh
Q 018116 32 AMSLKGAVELGIADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGG--EKEEEAYGLTAISA 107 (360)
Q Consensus 32 ~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~~~y~~t~~~~ 107 (360)
..+|.--.++.|++.|...+++.|+.+|++.+ ++ +..-+.|.|+.|...|+++...... .+.+..|++++.+-
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i---s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~ 80 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV---PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA 80 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEecccee
Confidence 45677778899999997643459999999999 56 4577999999999999999865210 01123477777553
|
|
| >smart00344 HTH_ASNC helix_turn_helix ASNC type | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.32 Score=37.05 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=40.7
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+..|+..|... ++.|..+||+.+|+ ++..+.+.++.|...|++...
T Consensus 4 ~D~~il~~L~~~-~~~~~~~la~~l~~---s~~tv~~~l~~L~~~g~i~~~ 50 (108)
T smart00344 4 IDRKILEELQKD-ARISLAELAKKVGL---SPSTVHNRVKRLEEEGVIKGY 50 (108)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeece
Confidence 456788888774 78999999999999 569999999999999999854
|
AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli |
| >PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.34 Score=32.69 Aligned_cols=37 Identities=16% Similarity=0.391 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+++.+..+||+.+++ ++.-....++-|...|+++.+.
T Consensus 20 ~~~v~~~~iA~~L~v---s~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 20 GGPVRTKDIAERLGV---SPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp TSSBBHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecC
Confidence 489999999999999 5688999999999999999875
|
The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A .... |
| >cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.38 Score=37.18 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=39.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCC--CCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKI--QPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~--~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|++.|...+++.|++||.+.+.- +..+..-+.|.|+.|...|++.+..
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 45577888765579999999998832 1115678999999999999999875
|
Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.96 E-value=3.7 Score=38.66 Aligned_cols=105 Identities=15% Similarity=0.218 Sum_probs=71.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC--CeEEEeec-hHHHhcCC----C--CCCeEEEeCCCCC---CCC---CccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG--IKCTVLDL-PHAVANMP----Q--TENLKYIAGDMFQ---YIP---PADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~----~--~~ri~~~~~D~~~---~~p---~~D~i 257 (360)
..++.+|||.-++.|+=+.++++..++ ..++.+|. +.-++... + ..++.....|... ..+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 467899999999999999999998765 56789998 55444333 2 3457777777643 122 28998
Q ss_pred Ee------cccc-------ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 258 FF------KLVF-------HAFGDED-------CLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 258 ~~------~~~l-------h~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
++ ..++ ..++.++ -.++|+.+.+.|+| ||.|+-.......
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~~ 293 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLTP 293 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCch
Confidence 87 2233 2333322 24689999999999 8877766655544
|
|
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=89.30 E-value=0.4 Score=38.43 Aligned_cols=54 Identities=26% Similarity=0.391 Sum_probs=31.3
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQ 249 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~ 249 (360)
..-|+|+|=|+|.+=-+|.+.+|+-++.++|..-.....-..+.=.++.||+.+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRE 82 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHH
Confidence 367999999999999999999999999999973221111113344567787765
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.65 Score=37.20 Aligned_cols=104 Identities=23% Similarity=0.311 Sum_probs=62.1
Q ss_pred eEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCC--CccEEEeccccccCCh---------hHHHHHHHHH
Q 018116 221 KCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ---YIP--PADAYFFKLVFHAFGD---------EDCLKILKKC 278 (360)
Q Consensus 221 ~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~---~~p--~~D~i~~~~~lh~~~~---------~~~~~~L~~~ 278 (360)
++.++|+ +++++..++ .+|++++..+=.. ..+ ..|+++++ |-++|- +.-.+.|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5789999 888877663 4689998765333 233 48888765 334432 3356789999
Q ss_pred HHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 279 REAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 279 ~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.+.|+| ||.+.|+-..-++.... +. ....+|.+-|.+..|.+.....+
T Consensus 79 l~lL~~---gG~i~iv~Y~GH~gG~e----E~----------------~av~~~~~~L~~~~~~V~~~~~~ 126 (140)
T PF06962_consen 79 LELLKP---GGIITIVVYPGHPGGKE----ES----------------EAVEEFLASLDQKEFNVLKYQFI 126 (140)
T ss_dssp HHHEEE---EEEEEEEE--STCHHHH----HH----------------HHHHHHHHTS-TTTEEEEEEEES
T ss_pred HHhhcc---CCEEEEEEeCCCCCCHH----HH----------------HHHHHHHHhCCcceEEEEEEEcc
Confidence 999999 78777755443332111 10 02345555556667887777766
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PRK15431 ferrous iron transport protein FeoC; Provisional | Back alignment and domain information |
|---|
Probab=89.19 E-value=0.56 Score=33.25 Aligned_cols=43 Identities=12% Similarity=0.221 Sum_probs=37.6
Q ss_pred chhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 44 ADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 44 f~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
=|.|+.. +..++.+||..+++ +++.++.+|..|+.+|-+++..
T Consensus 8 Rd~l~~~-gr~s~~~Ls~~~~~---p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 8 RDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHHc-CcccHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 3566664 89999999999999 4699999999999999999874
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.06 E-value=0.66 Score=43.91 Aligned_cols=61 Identities=7% Similarity=0.063 Sum_probs=52.8
Q ss_pred CCCeEEEeCCCCC---CC--CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 237 TENLKYIAGDMFQ---YI--PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 237 ~~ri~~~~~D~~~---~~--p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
.++|+++.+++.+ .. .++|.+++.....++++++..+.++.+.+.++| ||+++.-....+.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence 6899999998876 23 259999999999999999999999999999999 9999987665544
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=88.18 E-value=3.7 Score=37.08 Aligned_cols=122 Identities=17% Similarity=0.234 Sum_probs=71.6
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCeEEEeCCCCC----C-CCCccEEEeccccccCCh-
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIK-CTVLDL-PHAVANMPQ-TENLKYIAGDMFQ----Y-IPPADAYFFKLVFHAFGD- 268 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~----~-~p~~D~i~~~~~lh~~~~- 268 (360)
+++|+-||.|.+...+.+. +.+ +..+|. +.+++..+. .+.. +..+|+.+ . .+.+|+++...-...++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 6899999999999988876 354 566898 777665543 1222 55677765 1 346999988654443322
Q ss_pred -------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 269 -------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 269 -------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
+..-.++..+.++++.. .-+++++|.+..-... .+.....+|.+.|++.||
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~--~P~~~v~ENV~g~~~~--------------------~~~~~~~~i~~~l~~~GY 136 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEK--KPKYFLLENVKGLLTH--------------------DNGNTLKVILNTLEELGY 136 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhc--CCCEEEEEcCcchhcc--------------------CchHHHHHHHHHHHhCCc
Confidence 11222333333333221 1257777765422110 112256778888899998
Q ss_pred cee
Q 018116 342 THY 344 (360)
Q Consensus 342 ~~~ 344 (360)
.+.
T Consensus 137 ~~~ 139 (275)
T cd00315 137 NVY 139 (275)
T ss_pred EEE
Confidence 754
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF14394 DUF4423: Domain of unknown function (DUF4423) | Back alignment and domain information |
|---|
Probab=88.00 E-value=0.7 Score=38.58 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=40.9
Q ss_pred CCCHHHHHHHc--CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhh
Q 018116 53 PITLSELVSAL--KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISAL 108 (360)
Q Consensus 53 ~~t~~ela~~~--~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 108 (360)
..++++||+++ ++ ...-++.-|+.|...|++++++ ++.|..|..+-.
T Consensus 39 ~~d~~~iak~l~p~i---s~~ev~~sL~~L~~~gli~k~~------~g~y~~t~~~l~ 87 (171)
T PF14394_consen 39 APDPEWIAKRLRPKI---SAEEVRDSLEFLEKLGLIKKDG------DGKYVQTDKSLT 87 (171)
T ss_pred CCCHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEECC------CCcEEEecceee
Confidence 34999999999 99 5788999999999999999997 579999886544
|
|
| >COG3432 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.92 E-value=0.29 Score=36.18 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+++....-|.-.+++ +-......++.|+..|++..... |....|.+|+.|..+.
T Consensus 29 ~~~~~~Tri~y~aNl---ny~~~~~yi~~L~~~Gli~~~~~---~~~~~y~lT~KG~~fl 82 (95)
T COG3432 29 EGGIGITRIIYGANL---NYKRAQKYIEMLVEKGLIIKQDN---GRRKVYELTEKGKRFL 82 (95)
T ss_pred CCCCCceeeeeecCc---CHHHHHHHHHHHHhCCCEEeccC---CccceEEEChhHHHHH
Confidence 478888889999999 67999999999999997666641 1122699999998554
|
|
| >PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress | Back alignment and domain information |
|---|
Probab=87.91 E-value=1 Score=31.96 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceec-cccCCCCcccceecchhhh
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSK-TKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~-~~~~~~~~~~~y~~t~~~~ 107 (360)
+.|+..++||+.+++ ++.-++.-|..|.++|+|+. .+. .+.|..|..+-
T Consensus 21 ~~PVgSk~ia~~l~~---s~aTIRN~M~~Le~lGlve~~p~~-----s~GriPT~~aY 70 (78)
T PF03444_consen 21 GEPVGSKTIAEELGR---SPATIRNEMADLEELGLVESQPHP-----SGGRIPTDKAY 70 (78)
T ss_pred CCCcCHHHHHHHHCC---ChHHHHHHHHHHHHCCCccCCCCC-----CCCCCcCHHHH
Confidence 479999999999999 45889999999999999985 432 47788888765
|
Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent |
| >PRK13777 transcriptional regulator Hpr; Provisional | Back alignment and domain information |
|---|
Probab=87.66 E-value=1.1 Score=37.82 Aligned_cols=67 Identities=21% Similarity=0.183 Sum_probs=50.3
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.++..|... ++.|..+||+.+++ +...+.++++-|...|++.+.....|+-.-...+|+.|..+..
T Consensus 48 ~~iL~~L~~~-~~itq~eLa~~l~l---~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~~ 114 (185)
T PRK13777 48 HHILWIAYHL-KGASISEIAKFGVM---HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELLL 114 (185)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 4566667653 68999999999999 4577999999999999999874322121223889999886654
|
|
| >PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=87.64 E-value=0.55 Score=27.20 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=25.3
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCce
Q 018116 53 PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLF 86 (360)
Q Consensus 53 ~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l 86 (360)
|+|-+|||+.+|+ ...-+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~---t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL---TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC---cHHHHHHHHHHHHHcCCC
Confidence 5788999999999 458899999999998875
|
These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B .... |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.47 E-value=1.1 Score=41.64 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=41.2
Q ss_pred CcHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC----C----CCeEEEeec-hHHH
Q 018116 164 PGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF----P----GIKCTVLDL-PHAV 231 (360)
Q Consensus 164 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~----p----~~~~~~~D~-~~~~ 231 (360)
|++.+.|-+.++... -.+...+. .+....+|++|+|.|.++..+++.. | .+++..++. +...
T Consensus 52 pels~lFGella~~~----~~~wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~ 122 (370)
T COG1565 52 PELSQLFGELLAEQF----LQLWQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELR 122 (370)
T ss_pred hhHHHHHHHHHHHHH----HHHHHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHH
Confidence 566677766654322 11222233 3456789999999999998888764 3 678999998 5443
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=87.29 E-value=1.8 Score=39.40 Aligned_cols=104 Identities=15% Similarity=0.172 Sum_probs=70.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----CC-CccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY----IP-PADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~----~p-~~D~i~~ 259 (360)
..++.+|||..++.|+=+..+++..+ ...++..|+ +.-+..... ...+.....|.... .+ .||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678899999999999999999877 668999998 655554432 46677777776542 22 3899887
Q ss_pred ------ccccccCCh-------hH-------HHHHHHHHHHhc----cCCCCCcEEEEEeeecC
Q 018116 260 ------KLVFHAFGD-------ED-------CLKILKKCREAI----AGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ------~~~lh~~~~-------~~-------~~~~L~~~~~~L----~p~~~gG~lli~e~~~~ 299 (360)
..++..-++ ++ -.++|+++.+.+ +| ||+++-......
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~~ 223 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSLS 223 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccHH
Confidence 112222221 11 246899999999 99 787766555443
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=87.13 E-value=1.5 Score=45.04 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=55.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHC-------C-----CCeEEEeec-h---HHHhcCC---------------------C
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAF-------P-----GIKCTVLDL-P---HAVANMP---------------------Q 236 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~---------------------~ 236 (360)
.+.-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+. .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345799999999998776666544 3 467888885 3 1111100 0
Q ss_pred --------CC--CeEEEeCCCCCC---CC-CccEEEecc-ccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 237 --------TE--NLKYIAGDMFQY---IP-PADAYFFKL-VFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 237 --------~~--ri~~~~~D~~~~---~p-~~D~i~~~~-~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.+ ++++..+|+.+. +. .+|++++-. .-..-|+=.-..+|+++++.++| ||.+.-
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~---~~~~~t 204 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARP---GATLAT 204 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCC---CCEEEE
Confidence 12 334556777552 22 478877522 11111221234678888888888 776653
|
|
| >TIGR00373 conserved hypothetical protein TIGR00373 | Back alignment and domain information |
|---|
Probab=87.08 E-value=0.66 Score=38.15 Aligned_cols=46 Identities=17% Similarity=0.075 Sum_probs=39.5
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
..|+++|..+ +.+|-+|||..+|+ +...++++|..|...|++....
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi---~~~~VRk~L~~L~e~~Lv~~~r 62 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGI---KLNEVRKALYALYDAGLADYKR 62 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceeee
Confidence 5578888754 79999999999999 6789999999999999996543
|
This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. |
| >COG1846 MarR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=86.69 E-value=1 Score=34.68 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=51.3
Q ss_pred HHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcC
Q 018116 38 AVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKD 112 (360)
Q Consensus 38 a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~ 112 (360)
-.++.++..|... ++.+..+||+.+++ +...+.++++-|...|++.+.....|+-.-.+.+|+.|..+...
T Consensus 22 ~~q~~~L~~l~~~-~~~~~~~la~~l~i---~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~ 92 (126)
T COG1846 22 PPQYQVLLALYEA-GGITVKELAERLGL---DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQ 92 (126)
T ss_pred HHHHHHHHHHHHh-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHHH
Confidence 3456666677663 34444999999999 56999999999999999999764222112348999988865543
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=86.61 E-value=5 Score=38.12 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=62.7
Q ss_pred cCCCCEEEEeCCCC-chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEE---eCC-CCC---CC-C--CccEEEec
Q 018116 193 FEGLGSIVDVGGGN-GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYI---AGD-MFQ---YI-P--PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~---~~D-~~~---~~-p--~~D~i~~~ 260 (360)
..+..+||.+|||. |..+..+++.....++++++. ++..+.+++.....++ ..+ +.+ .. + ++|+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45678999999988 888899999876446888887 7666665432112222 111 111 11 1 48888763
Q ss_pred cc---------------cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 261 LV---------------FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 261 ~~---------------lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
-- |+-.++. ...++.+.+.|+| +|+++++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~~ 308 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGVY 308 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcCC
Confidence 21 1111222 3468888999999 9999888643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain | Back alignment and domain information |
|---|
Probab=86.28 E-value=1.2 Score=33.16 Aligned_cols=44 Identities=7% Similarity=0.135 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
.++|..|||+.+|+ +...+.|.|..|...|++.+.+. .+.|..+
T Consensus 46 ~~is~~eLa~~~g~---sr~tVsr~L~~Le~~GlI~r~~~-----~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL---SRTHVSDAIKSLARRRIIFRQGM-----MGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeecC-----CceeecC
Confidence 69999999999999 45899999999999999998752 3556665
|
This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=86.06 E-value=0.93 Score=39.71 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=44.9
Q ss_pred HHHHHHhhhhcCCC--CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC-------C--------CCCeEEEe
Q 018116 183 FIVKDCCRKIFEGL--GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP-------Q--------TENLKYIA 244 (360)
Q Consensus 183 ~~~~~~~~~~~~~~--~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~--------~~ri~~~~ 244 (360)
+.++++.+ ++++ .+|||.-+|-|.-+.-++.. ++++++++. |.+....+ . ..|++++.
T Consensus 63 ~~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 63 DPLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp SHHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred cHHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 44556665 4444 49999999999999888865 789999999 43322111 1 25899999
Q ss_pred CCCCCC--C--CCccEEEecccc
Q 018116 245 GDMFQY--I--PPADAYFFKLVF 263 (360)
Q Consensus 245 ~D~~~~--~--p~~D~i~~~~~l 263 (360)
+|..+- . ..+|+|++-=++
T Consensus 139 ~d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE--S-
T ss_pred CCHHHHHhhcCCCCCEEEECCCC
Confidence 998772 2 259999984443
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle | Back alignment and domain information |
|---|
Probab=85.79 E-value=0.51 Score=33.09 Aligned_cols=45 Identities=20% Similarity=0.472 Sum_probs=35.7
Q ss_pred cchhhhhCCCCCCHHHHHHHc---CCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 43 IADIIHSHGRPITLSELVSAL---KIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~---~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+|..... +..++.++|+.+ +... ..+++..++.+|.++|++++.+
T Consensus 16 ~~~~~~~--~~i~l~~ia~~l~~~~~k~-~~RRlYDI~NVLealgli~K~~ 63 (71)
T PF02319_consen 16 LFESSPD--KSISLNEIADKLISENVKT-QRRRLYDIINVLEALGLIEKQS 63 (71)
T ss_dssp HHHHCCC--TEEEHHHHHHHCHHHCCHH-HCHHHHHHHHHHHHCTSEEEEE
T ss_pred HHHHCCC--CcccHHHHHHHHccccccc-ccchhhHHHHHHHHhCceeecC
Confidence 3444443 799999999999 7711 2599999999999999999965
|
Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B. |
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=85.65 E-value=0.91 Score=44.72 Aligned_cols=65 Identities=23% Similarity=0.274 Sum_probs=51.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcC
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKD 112 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~ 112 (360)
+..++..|... ++.|..+||+.+++ +...+.+.++-|.+.|+++.... ....|.+|+.|+.+..+
T Consensus 8 e~~vL~~L~~~-~~~s~~eLA~~l~l---~~~tVt~~i~~Le~kGlV~~~~~----~~~~i~LTeeG~~~~~~ 72 (489)
T PRK04172 8 EKKVLKALKEL-KEATLEELAEKLGL---PPEAVMRAAEWLEEKGLVKVEER----VEEVYVLTEEGKKYAEE 72 (489)
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEEEee----eEEEEEECHHHHHHHHh
Confidence 45566666653 68999999999999 56899999999999999998752 13569999999955543
|
|
| >PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.29 E-value=1.3 Score=34.38 Aligned_cols=51 Identities=22% Similarity=0.390 Sum_probs=44.2
Q ss_pred HHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 36 KGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 36 ~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..+...|.+.+..+ |..|..+++..+|+ +-..+.++++.|++.|-|...+
T Consensus 10 r~eLk~rIvElVRe~-GRiTi~ql~~~TGa---sR~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 10 REELKARIVELVREH-GRITIKQLVAKTGA---SRNTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHHHHHHHHHHc-CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeCC
Confidence 344567788888885 89999999999999 5678999999999999999985
|
|
| >PRK11179 DNA-binding transcriptional regulator AsnC; Provisional | Back alignment and domain information |
|---|
Probab=85.25 E-value=0.95 Score=36.97 Aligned_cols=47 Identities=13% Similarity=0.289 Sum_probs=41.6
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+..|.+.|... +..|..+||+++|+ ++..+.+=++-|.+.|++...
T Consensus 10 ~D~~Il~~Lq~d-~R~s~~eiA~~lgl---S~~tV~~Ri~rL~~~GvI~~~ 56 (153)
T PRK11179 10 LDRGILEALMEN-ARTPYAELAKQFGV---SPGTIHVRVEKMKQAGIITGT 56 (153)
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeE
Confidence 577888999874 89999999999999 568899999999999999864
|
|
| >PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species | Back alignment and domain information |
|---|
Probab=85.14 E-value=1.4 Score=35.18 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
|++|++|||-+.|+ ..+.+..-|.++++-|-+.+..- ++.=+|+++
T Consensus 5 Ga~T~eELA~~FGv---ttRkvaStLa~~ta~Grl~Rv~q---~gkfRy~iP 50 (155)
T PF07789_consen 5 GAKTAEELAGKFGV---TTRKVASTLAMVTATGRLIRVNQ---NGKFRYCIP 50 (155)
T ss_pred CcccHHHHHHHhCc---chhhhHHHHHHHHhcceeEEecC---CCceEEeCC
Confidence 89999999999999 57999999999999999999862 112347775
|
The region in question is approximately 150 amino acid residues long. |
| >PRK11169 leucine-responsive transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=84.73 E-value=1 Score=37.29 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=42.2
Q ss_pred HHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 38 AVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 38 a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
..+..|+.+|.. ++..|..|||+++|+ ++..+.+=++-|...|++...
T Consensus 14 ~~D~~IL~~Lq~-d~R~s~~eiA~~lgl---S~~tv~~Ri~rL~~~GvI~~~ 61 (164)
T PRK11169 14 RIDRNILNELQK-DGRISNVELSKRVGL---SPTPCLERVRRLERQGFIQGY 61 (164)
T ss_pred HHHHHHHHHhcc-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 357889999987 489999999999999 568899999999999999854
|
|
| >PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks | Back alignment and domain information |
|---|
Probab=84.41 E-value=0.97 Score=32.01 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=41.8
Q ss_pred HHhCcchhhhhCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 39 VELGIADIIHSHG-RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 39 ~~l~lf~~L~~~~-~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.++.+++.|+.+. .+.+-.+|+..+|. |++.+...++.|...|++.+..
T Consensus 3 ~~~~~Le~I~rsR~~Gi~q~~L~~~~~~---D~r~i~~~~k~L~~~gLI~k~~ 52 (75)
T PF04182_consen 3 IQYCLLERIARSRYNGITQSDLSKLLGI---DPRSIFYRLKKLEKKGLIVKQS 52 (75)
T ss_pred hHHHHHHHHHhcCCCCEehhHHHHHhCC---CchHHHHHHHHHHHCCCEEEEE
Confidence 4566777787643 68899999999999 6799999999999999999985
|
This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=84.36 E-value=4.9 Score=30.66 Aligned_cols=81 Identities=26% Similarity=0.336 Sum_probs=49.4
Q ss_pred CCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCccEEEeccccccCChhHHHH
Q 018116 204 GGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY-------IPPADAYFFKLVFHAFGDEDCLK 273 (360)
Q Consensus 204 ~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~-------~p~~D~i~~~~~lh~~~~~~~~~ 273 (360)
||.|.++..+++.+ .+.+++++|. ++.++.++... +.++.||..++ ..++|.+++..- +++....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEEccC----CHHHHHH
Confidence 45567777766654 3457999999 88877776333 88999999773 125887766421 3444444
Q ss_pred HHHHHHHhccCCCCCcEEEE
Q 018116 274 ILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 274 ~L~~~~~~L~p~~~gG~lli 293 (360)
+...+ +.+.| ..+++.
T Consensus 79 ~~~~~-r~~~~---~~~ii~ 94 (116)
T PF02254_consen 79 IALLA-RELNP---DIRIIA 94 (116)
T ss_dssp HHHHH-HHHTT---TSEEEE
T ss_pred HHHHH-HHHCC---CCeEEE
Confidence 44444 44555 566654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=84.32 E-value=2.3 Score=37.90 Aligned_cols=35 Identities=20% Similarity=0.451 Sum_probs=26.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHCC--------CCeEEEeec-hHH
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFP--------GIKCTVLDL-PHA 230 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~-~~~ 230 (360)
..+|+|+|+|+|.++..+++.+. .++++.++. |..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 47999999999999999888653 458999998 544
|
; PDB: 4F3N_A 1ZKD_B. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=84.22 E-value=3.6 Score=38.59 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=66.1
Q ss_pred CCEEEEeCCCC-chHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCC-CC----C-CCC-CccEEEecccc
Q 018116 196 LGSIVDVGGGN-GGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGD-MF----Q-YIP-PADAYFFKLVF 263 (360)
Q Consensus 196 ~~~iLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D-~~----~-~~p-~~D~i~~~~~l 263 (360)
..+++-+|||. |.++..+++.+...+++++|. +.-++.|++ .+.+.....+ .. + .-. ++|+++-.--
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 33999999995 667788898888889999999 888888865 2222222221 10 1 112 5999886544
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
....++.+.++++| ||++.++-.....
T Consensus 248 -------~~~~~~~ai~~~r~---gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -------SPPALDQALEALRP---GGTVVVVGVYGGE 274 (350)
T ss_pred -------CHHHHHHHHHHhcC---CCEEEEEeccCCc
Confidence 13468888899999 9999988877655
|
|
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=83.65 E-value=1.3 Score=43.03 Aligned_cols=69 Identities=7% Similarity=0.135 Sum_probs=54.6
Q ss_pred HHHhCcchhhhhCCCC-CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh-hhhcCCC
Q 018116 38 AVELGIADIIHSHGRP-ITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA-LLIKDKS 114 (360)
Q Consensus 38 a~~l~lf~~L~~~~~~-~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~-~l~~~~~ 114 (360)
+.+..|+..|... ++ .+.++||+.+|+ +...+.+.+..|.+.|+++..... ...|.+|+.|. ++....|
T Consensus 3 ~~e~~iL~~l~~~-~~~~~~~~la~~~g~---~~~~v~~~~~~L~~kg~v~~~~~~----~~~~~LT~eG~~~l~~G~P 73 (492)
T PLN02853 3 MAEEALLGALSNN-EEISDSGQFAASHGL---DHNEVVGVIKSLHGFRYVDAQDIK----RETWVLTEEGKKYAAEGSP 73 (492)
T ss_pred hHHHHHHHHHHhc-CCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE----EEEEEECHHHHHHHHcCCH
Confidence 4567788888763 44 799999999999 568899999999999999776531 47799999998 5554443
|
|
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=83.13 E-value=1.8 Score=42.10 Aligned_cols=63 Identities=24% Similarity=0.334 Sum_probs=46.9
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcC--CCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALK--IQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~--~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+.|+..|.+ ++.+.-||++.++ + +...+.+.|+.|...|+++.... .+..-.|++|+.+..+.
T Consensus 374 ~~IL~~L~~--~~~~~~el~~~l~~~~---s~~~v~~hL~~Le~~GLV~~~~~--~g~~~~Y~Lt~~g~~~l 438 (442)
T PRK05638 374 LEILKILSE--REMYGYEIWKALGKPL---KYQAVYQHIKELEELGLIEEAYR--KGRRVYYKLTEKGRRLL 438 (442)
T ss_pred HHHHHHHhh--CCccHHHHHHHHcccC---CcchHHHHHHHHHHCCCEEEeec--CCCcEEEEECcHHHHHH
Confidence 345666664 6899999999998 6 56899999999999999975311 01123499999887443
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.97 E-value=1.3 Score=41.96 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=55.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-CCC--ccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-Y-IPP--ADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~-~p~--~D~i~~~~ 261 (360)
.+...+||||.|||.++...+++- .-.++.++. .+|.+.|++ +++|+++...-.+ . .|. +|+++.-.
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhh
Confidence 345689999999999998888875 446899998 888887764 6778877554322 2 222 66655433
Q ss_pred ccccCChhHHHHHHHHHHHhcc
Q 018116 262 VFHAFGDEDCLKILKKCREAIA 283 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~ 283 (360)
+.-.+--+-+..-++++++.|-
T Consensus 144 fdtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhhccccchhHHHHHHHhc
Confidence 2222222223344566665553
|
|
| >PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function | Back alignment and domain information |
|---|
Probab=82.81 E-value=1.4 Score=32.53 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=41.1
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++.|+.+|... +|-.+.-||..+++ +...+...|+-|..+|++++..
T Consensus 9 ~~~IL~hl~~~-~~Dy~k~ia~~l~~---~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 9 DLKILQHLKKA-GPDYAKSIARRLKI---PLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred HHHHHHHHHHH-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 46677778765 79999999999999 5789999999999999999986
|
|
| >PHA02943 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.38 E-value=1.7 Score=34.95 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=43.3
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
..+++.|.. |..|..|||+++|+ +....+-.|..|...|.+.+...+ -...|.+.+
T Consensus 14 ~eILE~Lk~--G~~TtseIAkaLGl---S~~qa~~~LyvLErEG~VkrV~~G---~~tyw~l~~ 69 (165)
T PHA02943 14 IKTLRLLAD--GCKTTSRIANKLGV---SHSMARNALYQLAKEGMVLKVEIG---RAAIWCLDE 69 (165)
T ss_pred HHHHHHHhc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCceEEEeec---ceEEEEECh
Confidence 346677743 78999999999999 678899999999999999998631 122366655
|
|
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.37 E-value=1.4 Score=37.83 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=34.9
Q ss_pred chhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 44 ADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 44 f~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+.|...+.+.|++|+|+++|+ +---.+|.|.+|++.|+++-+
T Consensus 164 ~~~~~~~~~~~Taeela~~~gi---SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 164 REALKEPDQELTAEELAQALGI---SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred HHHHhCcCCccCHHHHHHHhCc---cHHHHHHHHHHHHhcCeeeEE
Confidence 3444422379999999999999 567789999999999999775
|
|
| >PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A | Back alignment and domain information |
|---|
Probab=82.04 E-value=1.7 Score=30.45 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=41.1
Q ss_pred HHHHHHHHhCcch-----hhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 33 MSLKGAVELGIAD-----IIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 33 ~~L~~a~~l~lf~-----~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
..+..+-+.|..+ .+. -+.|-++||..+|+ +...+.+.|+.|...|++....
T Consensus 6 ~Ll~l~~~~~~~~~~~~~~~~---~~lt~~~iA~~~g~---sr~tv~r~l~~l~~~g~I~~~~ 62 (76)
T PF13545_consen 6 FLLELAERFGRRQDGDGIRIP---LPLTQEEIADMLGV---SRETVSRILKRLKDEGIIEVKR 62 (76)
T ss_dssp HHHHHHHHHEEEEETTEEEEE---EESSHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHCCCCCCCCceEE---ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC
Confidence 4455666666641 232 48999999999999 5688999999999999999874
|
... |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=81.99 E-value=4.8 Score=36.40 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=48.1
Q ss_pred EEEEeCCCC--chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChhHHHHH
Q 018116 198 SIVDVGGGN--GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKI 274 (360)
Q Consensus 198 ~iLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~ 274 (360)
+|.=||+|. |.++..|.++ +.+++++|. ++.++.+.....+.....+. +...++|+|+++ .+.....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVila-----vp~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILA-----LPIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEc-----CCHHHHHHH
Confidence 466677764 3455555544 568999998 76666654322222111111 123468998875 366667788
Q ss_pred HHHHHHhccC
Q 018116 275 LKKCREAIAG 284 (360)
Q Consensus 275 L~~~~~~L~p 284 (360)
++++...+++
T Consensus 74 ~~~l~~~l~~ 83 (279)
T PRK07417 74 SEQLIPALPP 83 (279)
T ss_pred HHHHHHhCCC
Confidence 8999888877
|
|
| >COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription] | Back alignment and domain information |
|---|
Probab=81.94 E-value=4.4 Score=32.91 Aligned_cols=79 Identities=25% Similarity=0.395 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHhCc-------chhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCccc
Q 018116 26 VFNHLSAMSLKGAVELGI-------ADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEE 98 (360)
Q Consensus 26 ~~g~~~~~~L~~a~~l~l-------f~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~ 98 (360)
.++.|...|+.++.+.++ +-.+...+.|+++.+|+..++.. |...+..-||-|...|+++..+. |-+-
T Consensus 64 Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~e--Dth~itYslrKL~k~gLit~t~~---gkev 138 (199)
T COG5631 64 AFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNRE--DTHNITYSLRKLLKGGLITRTGS---GKEV 138 (199)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccc--cchhHHHHHHHHHhccceecCCC---CceE
Confidence 446677778888765443 33343335799999999999996 67788899999999999999873 2235
Q ss_pred ceecchhhhhh
Q 018116 99 AYGLTAISALL 109 (360)
Q Consensus 99 ~y~~t~~~~~l 109 (360)
.|..|+.+..-
T Consensus 139 Ty~vTa~G~~a 149 (199)
T COG5631 139 TYEVTALGHRA 149 (199)
T ss_pred EEEEecchHHH
Confidence 59999987643
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=81.75 E-value=2.4 Score=37.96 Aligned_cols=36 Identities=19% Similarity=0.450 Sum_probs=31.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-----CCCeEEEeech
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-----PGIKCTVLDLP 228 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~ 228 (360)
+.+...++|.|||.|.++..+++.. +..+++.+|..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 4567899999999999999999988 56789999983
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=81.28 E-value=2.1 Score=41.84 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=53.5
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh-hhhcCCC
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA-LLIKDKS 114 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~-~l~~~~~ 114 (360)
.+..|+..|....+..+.++||+.+|+ +...+.+.+.-|.+.|+++..... ...|.+|+.|. ++....|
T Consensus 7 ~e~~iL~~l~~~~~~~~~~~la~~~~~---~~~~v~~~~~~L~~kg~v~~~~~~----~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 7 EENTILSKLESENEIVNSLALAESLNI---DHQKVVGAIKSLESANYITTEMKK----SNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE----EEEEEECHHHHHHHHcCCH
Confidence 455666777652257999999999999 568899999999999999876531 46799999998 5554443
|
|
| >PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.25 E-value=1.9 Score=41.46 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
+.|.|.++|++++++ +++.++++|+.|...|++.+.+ ++.|.+...-
T Consensus 308 g~~~t~~~La~~l~~---~~~~v~~iL~~L~~agLI~~~~------~g~~~l~rd~ 354 (412)
T PRK04214 308 GKALDVDEIRRLEPM---GYDELGELLCELARIGLLRRGE------RGQWVLARDL 354 (412)
T ss_pred CCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCeEecC------CCceEecCCH
Confidence 479999999999999 4689999999999999999764 4668775443
|
|
| >COG1522 Lrp Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=81.21 E-value=1.7 Score=35.26 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=42.0
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.+..|...|.. +++.|..+||+++|+ ++..+.+-++-|...|++....
T Consensus 9 ~D~~IL~~L~~-d~r~~~~eia~~lgl---S~~~v~~Ri~~L~~~GiI~~~~ 56 (154)
T COG1522 9 IDRRILRLLQE-DARISNAELAERVGL---SPSTVLRRIKRLEEEGVIKGYT 56 (154)
T ss_pred HHHHHHHHHHH-hCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCceeeEE
Confidence 46778888887 479999999999999 5688999999999999998874
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=80.94 E-value=1.9 Score=38.59 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=45.9
Q ss_pred HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChhHHHHHHHHHHHhccC
Q 018116 209 FSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAG 284 (360)
Q Consensus 209 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p 284 (360)
++.+|.++.+..+++++|. +..++.+.+.+-+.-...+ .+...++|+|+++- |.....++|+++...+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCC
Confidence 3567888888999999999 8888777443333333222 12345689998763 666778888888888887
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >COG1378 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=80.50 E-value=2.5 Score=37.58 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=47.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
|.+++-.|-.. |+.|+.||++.+|+ +...+..+|+-|...|+++... |.+..|+.-+-...+.
T Consensus 18 Ea~vY~aLl~~-g~~tA~eis~~sgv---P~~kvY~vl~sLe~kG~v~~~~----g~P~~y~av~p~~~i~ 80 (247)
T COG1378 18 EAKVYLALLCL-GEATAKEISEASGV---PRPKVYDVLRSLEKKGLVEVIE----GRPKKYRAVPPEELIE 80 (247)
T ss_pred HHHHHHHHHHh-CCccHHHHHHHcCC---CchhHHHHHHHHHHCCCEEeeC----CCCceEEeCCHHHHHH
Confidence 34445455443 89999999999999 4789999999999999999974 2256788877555443
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=80.46 E-value=1.8 Score=35.41 Aligned_cols=86 Identities=20% Similarity=0.277 Sum_probs=50.9
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCCCCCccEEEecccc
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------------TENLKYIAGDMFQYIPPADAYFFKLVF 263 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~ri~~~~~D~~~~~p~~D~i~~~~~l 263 (360)
+|.-+|+|+++.+.+..-...+.+++.... ++.++..++ ..++.+ ..|+.+-..+.|+|++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~Iiia--- 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIA--- 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE----
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEec---
Confidence 466789998887766444444678888888 555543321 123332 23332224578988764
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.|......+++++...+++ +..++
T Consensus 77 --vPs~~~~~~~~~l~~~l~~----~~~ii 100 (157)
T PF01210_consen 77 --VPSQAHREVLEQLAPYLKK----GQIII 100 (157)
T ss_dssp --S-GGGHHHHHHHHTTTSHT----T-EEE
T ss_pred --ccHHHHHHHHHHHhhccCC----CCEEE
Confidence 3555567889999999987 55544
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=80.27 E-value=9.4 Score=29.94 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=37.7
Q ss_pred HHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeCC
Q 018116 272 LKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFG 351 (360)
Q Consensus 272 ~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 351 (360)
..+++++++.++| ||.+.-.. +...+++.|.++||.+.+....++
T Consensus 70 ~e~~~~l~~~~~~---~~~l~Tys--------------------------------~a~~Vr~~L~~aGF~v~~~~g~g~ 114 (124)
T PF05430_consen 70 EELFKKLARLSKP---GGTLATYS--------------------------------SAGAVRRALQQAGFEVEKVPGFGR 114 (124)
T ss_dssp HHHHHHHHHHEEE---EEEEEES----------------------------------BHHHHHHHHHCTEEEEEEE-STT
T ss_pred HHHHHHHHHHhCC---CcEEEEee--------------------------------chHHHHHHHHHcCCEEEEcCCCCC
Confidence 3589999999999 66553310 224578899999999988887777
Q ss_pred ceeEEEEeC
Q 018116 352 LKSLIEVYP 360 (360)
Q Consensus 352 ~~~vi~~~~ 360 (360)
-.-++.+.+
T Consensus 115 Kr~~~~a~~ 123 (124)
T PF05430_consen 115 KREMLRAVK 123 (124)
T ss_dssp SSEEEEEEC
T ss_pred cchheEEEc
Confidence 666666543
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term | Back alignment and domain information |
|---|
Probab=80.15 E-value=2 Score=33.24 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.+.|++|||+.+.+ +++.++.+|+.|.+.|.++...
T Consensus 18 ~~vtl~elA~~l~c---S~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFC---SRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeeeC
Confidence 57899999999999 5799999999999999999985
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.12 E-value=2 Score=38.49 Aligned_cols=39 Identities=8% Similarity=-0.004 Sum_probs=29.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVAN 233 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~ 233 (360)
-..++|||+|||.|--.+...... .+++..+|. ..+++.
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~ 154 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRL 154 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-cceeeeEecchhheee
Confidence 457899999999998887776653 267777787 666643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 360 | ||||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 4e-83 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 3e-82 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 7e-78 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 1e-76 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 1e-76 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 2e-76 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 1e-27 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 4e-26 | ||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 2e-24 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 2e-21 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 2e-19 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 1e-13 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 5e-10 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 1e-08 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 3e-08 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 1e-07 | ||
| 3i53_A | 332 | Crystal Structure Of An O-Methyltransferase (Ncsb1) | 8e-05 |
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From Neocarzinostatin Biosynthesis In Complex With S-Adenosyl-L- Homocysteine (Sah) Length = 332 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 402 bits (1036), Expect = e-141
Identities = 162/360 (45%), Positives = 233/360 (64%), Gaps = 8/360 (2%)
Query: 1 MDTIENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELV 60
M + N G E+F+ + + ++ + +MSLK AVE+ I +II +HG+PI+LS LV
Sbjct: 1 MASSIN--GRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLV 58
Query: 61 SALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPL 120
S L++ +K N+ R MR L H G F KEEE+Y LT S LL++ CL+P+
Sbjct: 59 SILQVPSSKIGNVRRLMRYLAHNGFFEII----TKEEESYALTVASELLVRGSDLCLAPM 114
Query: 121 VSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEM 180
V +LDP H + KW D++++ G +WD++++NP + FN AM SDS++
Sbjct: 115 VECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL 174
Query: 181 AIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENL 240
++DC +F+GL SIVDVGGG G +KII E FP +KC V D P V N+ + NL
Sbjct: 175 INLALRDC-DFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNL 233
Query: 241 KYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300
Y+ GDMF IP ADA K + H + D+DCL+ILKKC+EA+ +G+RGKV I+D+VI++
Sbjct: 234 TYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 293
Query: 301 KEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
K+D++QVT+ KLL D M+ ++GKER +EEWK LF++AGF HYKI+ + G SLIE+YP
Sbjct: 294 KKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 393 bits (1012), Expect = e-137
Identities = 169/354 (47%), Positives = 230/354 (64%), Gaps = 8/354 (2%)
Query: 14 ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNL 73
EL+ + + V+N +S+M+LK A+ELGIAD IH+HG+P+TLSEL S+LK+ P+K + L
Sbjct: 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 65
Query: 74 FRFMRLLVHMGLFSKTKV----GGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPEN 129
RF+RLL H G F+KT V G E+EE AY LT S LLI K CLS +V G L P +
Sbjct: 66 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSS 125
Query: 130 IFPLHFISKWFK-GNDISVWETVHGKNYWDYMNQNPGLSQ--RFNQAMISDSEMAIFIVK 186
+ KWF + +++E G+++WD++N++ S F AM SDS M +++
Sbjct: 126 LDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQ 185
Query: 187 DCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGD 246
+ +++FEGL S+VDVGGG GG +K+I E FP +KCTV D P V N+ ENL ++ GD
Sbjct: 186 EN-KRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGD 244
Query: 247 MFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQ 306
MF+ IP ADA K V H + DE LKILK +EAI+ G+ GKV+I+DI I+E D
Sbjct: 245 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 304
Query: 307 VTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
+TE +L D +M GKERT +EW+ L DAGF+ YKIT + G KSLIEVYP
Sbjct: 305 LTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 366 bits (941), Expect = e-126
Identities = 92/353 (26%), Positives = 173/353 (49%), Gaps = 14/353 (3%)
Query: 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRP---ITLSELVSALKIQPTKTSN- 72
+ L N + L A++L + +II P ++ SE+ S L +
Sbjct: 23 SACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLP 82
Query: 73 --LFRFMRLLVHMGLFSKTKVGGE--KEEEAYGLTAISALLIKDKS-YCLSPLVSGILDP 127
L R +RLL + + T E E YGL+ + L+ D+S L+ + + P
Sbjct: 83 NRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYP 142
Query: 128 ENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKD 187
+ + DI +++ VHG +++M ++ ++Q FN++M+ + + +
Sbjct: 143 ALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLE 202
Query: 188 CCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDM 247
FEG+ ++VDVGGG+G ++I +P IK DLP + N P ++++ GDM
Sbjct: 203 IY-TGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDM 261
Query: 248 FQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQV 307
F +P DA K V H + DE C++ L C +A+ GKV+I++ ++ E+ + +
Sbjct: 262 FASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKAL---SPNGKVIIVEFILPEEPNTSEE 318
Query: 308 TEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITN-VFGLKSLIEVY 359
++ D LM ++V G+ERT+++++ L +GF+ +++ F ++E Y
Sbjct: 319 SKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFY 371
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 364 bits (937), Expect = e-126
Identities = 82/357 (22%), Positives = 139/357 (38%), Gaps = 27/357 (7%)
Query: 9 GISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPT 68
+ + + + A +L+ A +G+AD + P T +EL +A
Sbjct: 13 AGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLV--DGPRTPAELAAATGTDA- 69
Query: 69 KTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPE 128
L R +RLL + + + + LT A L D + D
Sbjct: 70 --DALRRVLRLLAVRDVV-------RESDGRFALTDKGAALRSDSPVPARAGILMFTDTM 120
Query: 129 NIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDC 188
H ++ + + G + Y + + + + + M + S I+
Sbjct: 121 FWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARA 179
Query: 189 CRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-----TENLKYI 243
F G++ DVGGG GGF + PG++ +LD VA K +
Sbjct: 180 GD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVV 237
Query: 244 AGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKED 303
GD + +P AD + K + H +GDED ++IL CR + + G+VL++D V+ E D
Sbjct: 238 EGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAH---GRVLVIDAVVPEGND 294
Query: 304 KHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
HQ D +M + G+ERT E + LF AG ++ + S+ P
Sbjct: 295 AHQSK----EMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 361 bits (929), Expect = e-124
Identities = 99/363 (27%), Positives = 176/363 (48%), Gaps = 13/363 (3%)
Query: 5 ENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRP---ITLSELVS 61
E + + E + ++L + M+LK A+EL + +I+ P I+ +E+ +
Sbjct: 8 EIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAA 67
Query: 62 ALKIQ-PTKTSNLFRFMRLLVHMGLFSKT--KVGGEKEEEAYGLTAISALLIKDKS-YCL 117
L P L R +RLL + + T ++ K E YGL + L K++ L
Sbjct: 68 QLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSL 127
Query: 118 SPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISD 177
+P + D + P ++ + +G N +DY + +++ FN+ M S+
Sbjct: 128 APFLLLATDKVLLEPWFYLKDAIL-EGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSN 186
Query: 178 SEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQT 237
S + + + + FEGL +IVDVGGG G + +I +P I DLPH + + P
Sbjct: 187 STITMKKILEMY-NGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAF 245
Query: 238 ENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297
++++ GDMF +P DA F K + H + DE CLK+LK C A+ + GKV++ + +
Sbjct: 246 SGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAAL---PDHGKVIVAEYI 302
Query: 298 INEKEDKHQVTEAKLLGDTLM-SVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLI 356
+ D T+ + D LM + + GKERT++E++ L + +GF +K+ + ++
Sbjct: 303 LPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVM 362
Query: 357 EVY 359
E
Sbjct: 363 EFL 365
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 352 bits (906), Expect = e-121
Identities = 83/369 (22%), Positives = 157/369 (42%), Gaps = 30/369 (8%)
Query: 1 MDTIENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELV 60
M + V ++ A ++ AVELG+ +++ P T + L
Sbjct: 21 MTVEQTPENPGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQEG--PRTATALA 78
Query: 61 SALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPL 120
A L R +RLL +G+F ++ + A+SA+L+ D + ++
Sbjct: 79 EATGAHEQT---LRRLLRLLATVGVFDDLG-----HDDLFAQNALSAVLLPDPASPVATD 130
Query: 121 VSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEM 180
P + ++ + + + ++ +G ++W +++P + FN+AM S S
Sbjct: 131 ARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLT 189
Query: 181 AIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ---- 236
V F G + VD+GGG G + +AFPG++ T+L+ P +
Sbjct: 190 EAGQVAAAY--DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTG 247
Query: 237 ---TENLKYIAGDMFQYIPP-ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVL 292
+ + + GD F+ IP AD Y K V H + D+D ++IL++ A+ ++L
Sbjct: 248 RGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAM---KPDSRLL 304
Query: 293 IMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNV-FG 351
++D +I+E+ L D L+ V V G ER++ E+ L +G + G
Sbjct: 305 VIDNLIDERPAAST-----LFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAG 359
Query: 352 LKSLIEVYP 360
++E+
Sbjct: 360 PVRIVEIRR 368
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 351 bits (901), Expect = e-120
Identities = 87/366 (23%), Positives = 171/366 (46%), Gaps = 14/366 (3%)
Query: 1 MDTIENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIH-SHGRPITLSEL 59
M + + S E + ++L + + M+LK A+ELG+ +I+ + G+ +T +E+
Sbjct: 5 MGSTAADMAASADE--DACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEV 62
Query: 60 VSALKIQ--PTKTSNLFRFMRLLVHMGLFSKTKVGGE--KEEEAYGLTAISALLIKDKS- 114
+ L P + R +RLL + + G+ + +YG + L ++
Sbjct: 63 AAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDG 122
Query: 115 YCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAM 174
++ L D + +++ + + +G + ++Y +P ++ FN+ M
Sbjct: 123 VSMAALALMNQDKVLMESWYYLKDAVL-DGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGM 181
Query: 175 ISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANM 234
+ S + + + FEGLG++VDVGGG G I+ +P IK DLPH ++
Sbjct: 182 KNHSIIITKKLLELY-HGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEA 240
Query: 235 PQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294
PQ + ++ GDMF+ +P D K + H + D+ C +LK C +A+ GKV+++
Sbjct: 241 PQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDAL---PAHGKVVLV 297
Query: 295 DIVINEKEDKHQVTEAKLLGD-TLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLK 353
++ + + ++ D +++ + G+ER + E++ L AGFT K T ++
Sbjct: 298 QCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANA 357
Query: 354 SLIEVY 359
IE
Sbjct: 358 WAIEFT 363
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 337 bits (866), Expect = e-115
Identities = 77/370 (20%), Positives = 140/370 (37%), Gaps = 34/370 (9%)
Query: 5 ENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALK 64
E ++ R + + + + + M ++ A L + D I T+ L +
Sbjct: 6 TAEPTVAARPQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHIL--AGARTVKALAARTD 63
Query: 65 IQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGI 124
+P L R +R LV +GL E + T + LL D
Sbjct: 64 TRP---EALLRLIRHLVAIGLLE------EDAPGEFVPTEVGELLADDHPAAQRAWHDLT 114
Query: 125 LDPENIFPL-HFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIF 183
+ + +E+++GK +++ + P L F+ + D ++A
Sbjct: 115 QAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFD 173
Query: 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ------- 236
+ + ++DVGGG GGF+ I+ P + TVL++ V
Sbjct: 174 APAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGL 231
Query: 237 TENLKYIAGDMFQYIPP-ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295
++ + + GD F+ +P ADA V + D D ++IL +C EA+ G++LI +
Sbjct: 232 SDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALE---PGGRILIHE 288
Query: 296 IVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFG---- 351
++ E D M V + G RT E+W L AG ++ +
Sbjct: 289 RDD---LHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIP 345
Query: 352 -LKSLIEVYP 360
SL+ + P
Sbjct: 346 YDLSLLVLAP 355
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 336 bits (864), Expect = e-114
Identities = 72/367 (19%), Positives = 135/367 (36%), Gaps = 31/367 (8%)
Query: 8 GGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQP 67
G + + +++ + N ++ M+L+ A L + D + TL+ L P
Sbjct: 6 PGEPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL--AGADTLAGLADRTDTHP 63
Query: 68 TKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDP 127
L R +R L +G+ EK+ T + LL +
Sbjct: 64 ---QALSRLVRHLTVVGVLEGG----EKQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAV 116
Query: 128 ENIFPL-HFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVK 186
+ + + + +G+ +W+ ++ + L+ F+ M D ++A
Sbjct: 117 SHADLAFTGLLDVVR-TGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPA 175
Query: 187 DCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TEN 239
D + + ++DVGGGNGG I+ P ++ T+++L + +
Sbjct: 176 DAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADR 233
Query: 240 LKYIAGDMFQYIPP-ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298
+ GD F+ +P AD V + DED L IL+ C A+ G++L++D
Sbjct: 234 VTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPG---GRLLVLDRAD 290
Query: 299 NEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLK----- 353
E + + L D M + G+ RT +E L AG
Sbjct: 291 VEGDGADRFFST--LLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDF 348
Query: 354 SLIEVYP 360
S++E
Sbjct: 349 SILEFTA 355
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 332 bits (854), Expect = e-113
Identities = 80/353 (22%), Positives = 135/353 (38%), Gaps = 34/353 (9%)
Query: 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRF 76
+R + + + M+++ A L +AD I + T +E+ SA +L R
Sbjct: 4 RAAHIGLRALADLATPMAVRVAATLRVADHIAAG--HRTAAEIASAAGAHA---DSLDRL 58
Query: 77 MRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDP-ENIFPLHF 135
+R LV +GLF+ + YGLT L D + +
Sbjct: 59 LRHLVAVGLFT------RDGQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVE 112
Query: 136 ISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEG 195
++ + + +G ++W+ + +P LS F+ M E+ + +
Sbjct: 113 LAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD--WAA 169
Query: 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMF 248
LG +VDVGGG+GG + A + TVLDL + + + + + G F
Sbjct: 170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF 229
Query: 249 QYIPP-ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQV 307
+P A Y V H + D + IL++C EA G G VL+++ V +
Sbjct: 230 DPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAA---GSGGVVLVIEAVAGD------- 279
Query: 308 TEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
A D M GKER+ E L AG + S++E+
Sbjct: 280 EHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPI-SYVSIVEMTA 331
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 332 bits (854), Expect = e-113
Identities = 81/355 (22%), Positives = 138/355 (38%), Gaps = 33/355 (9%)
Query: 14 ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNL 73
+I++V + + A LG+AD+I S + L +A+ +
Sbjct: 4 SNLAAARNLIQVVTGEWKSRCVYVATRLGLADLIESG--IDSDETLAAAVGSDA---ERI 58
Query: 74 FRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPL 133
R MRLLV +F + Y T S LL +D +V E
Sbjct: 59 HRLMRLLVAFEIFQ------GDTRDGYANTPTSHLL-RDVEGSFRDMVL-FYGEEFHAAW 110
Query: 134 HFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIF 193
+ +E G++++ Y+ + P +RF AM + + I + F
Sbjct: 111 TPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPRLL---DF 166
Query: 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGD 246
G S VDVGGG+G +K I +A P + +LD ++ E + + GD
Sbjct: 167 RG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGD 225
Query: 247 MFQYIPP-ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH 305
M Q +P D Y + + L++L CREA+ G+V++++ I+ E
Sbjct: 226 MLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAM---AGDGRVVVIERTISASEPSP 282
Query: 306 QVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360
+L D + ++ G+ RT EE L GF +I ++ +I
Sbjct: 283 ----MSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 313 bits (803), Expect = e-105
Identities = 67/365 (18%), Positives = 143/365 (39%), Gaps = 31/365 (8%)
Query: 5 ENEGGISVRELFEGHGQVIRLVFN-HLSAMSLKGAVELGIADIIHSHGRPITLSELVSAL 63
+S +L + + LVF + +K A+EL + + P L+ L +
Sbjct: 17 RGSHMMSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMA--EGPKDLATLAADT 74
Query: 64 KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSG 123
P L + L M + E+ + LT + + + +
Sbjct: 75 GSVP---PRLEMLLETLRQMRVI-------NLEDGKWSLTEFADYMFSPTPKEPNLHQTP 124
Query: 124 ILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIF 183
+ ++ G +V + K Y + F + S+++ AI
Sbjct: 125 VAKA----MAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQ 180
Query: 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ------- 236
++ + + +G+ ++DVGGG G S + + FP + T+L+LP A+ + +
Sbjct: 181 LLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV 238
Query: 237 TENLKYIAGDMFQ-YIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295
+ ++ IA D+++ P ADA F + ++ ++ + KK +A+ G++LI+D
Sbjct: 239 ADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMR---SGGRLLILD 295
Query: 296 IVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSL 355
+VI++ E+ + + + M SV + +K + G+ + + +
Sbjct: 296 MVIDDPENPNFDYLSHYILGAGMPFSV-LGFKEQARYKEILESLGYKDVTMVRKYDHLLV 354
Query: 356 IEVYP 360
V P
Sbjct: 355 QAVKP 359
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 266 bits (682), Expect = 1e-87
Identities = 56/348 (16%), Positives = 123/348 (35%), Gaps = 34/348 (9%)
Query: 19 HGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMR 78
V + + ++K AVEL + I + L + +
Sbjct: 7 PALFFNTVNAYQRSAAIKAAVELNVFTAIS--QGIESSQSLAQKCQTSE---RGMRMLCD 61
Query: 79 LLVHMGLFSKTKVGGEKEEEAYGLTAISA-LLIKDKSYCLSPLVSGILDPENIFPLHFIS 137
LV +G K+ E Y LT+ SA L + + + + +L P + ++
Sbjct: 62 YLVIIGFM-------TKQAEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLT 114
Query: 138 KWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLG 197
++ ++ + +F +AM ++ +
Sbjct: 115 AAVLKGGTAISS-------EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPL 167
Query: 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ- 249
++D+ +G F +++ P + +D + + IAG F+
Sbjct: 168 KVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV 227
Query: 250 -YIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVT 308
Y D H F C ++L+K + A+A GKV++ D + N
Sbjct: 228 DYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALA---VEGKVIVFDFIPNSDRITPP-- 282
Query: 309 EAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLI 356
+A +++ + +G T E++++F +AGF+H ++ ++ + +
Sbjct: 283 DAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQV 330
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 259 bits (664), Expect = 1e-84
Identities = 51/351 (14%), Positives = 117/351 (33%), Gaps = 35/351 (9%)
Query: 24 RLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHM 83
+ F + + ++ GI ++ TL E+ + + + +
Sbjct: 21 EIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTR---YAAQVLLEASLTI 77
Query: 84 GLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGN 143
G EE+ Y L L+ DK + + N L + +
Sbjct: 78 GTI-------LLEEDRYVLAKAGWFLLNDKM---ARVNMEFNHDVNYQGLFHLEEALLNG 127
Query: 144 DISVWETVHGK--NYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKI-FEGLGSIV 200
V G+ ++ ++Q P Q+ D + + ++
Sbjct: 128 R-PEGLKVFGEWPTIYEGLSQLPEQVQKSWFGF--DHFYSDQSFGKALEIVFSHHPKRLL 184
Query: 201 DVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQYIPP 253
D+GG G ++ + ++ T++DLP + M + +E + ++ P
Sbjct: 185 DIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP 244
Query: 254 ----ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTE 309
DA + F +E+ + IL + ++I + KV IM+ + + + +
Sbjct: 245 FPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIG---KDSKVYIMETLWDRQRYETASYC 301
Query: 310 AKLLG-DTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLK-SLIEV 358
+ + + K ++ +AG +I + GL S+++
Sbjct: 302 LTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQC 352
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 252 bits (645), Expect = 9e-82
Identities = 51/359 (14%), Positives = 116/359 (32%), Gaps = 45/359 (12%)
Query: 13 RELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSN 72
+ +++L + + L AV + D+ T +E+ ++ +
Sbjct: 19 KAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGMVE---GK 72
Query: 73 LFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA-LLIKDKSYCLSPLVSGILDPENIF 131
+ L +GL KE +A+ TA++ L + + P+V
Sbjct: 73 AAILLHALAALGLL-------TKEGDAFRNTALTERYLTTTSADYIGPIV--EHQYLQWD 123
Query: 132 PLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRK 191
+ + + E + FN AM+ S+ + +V +
Sbjct: 124 NWPRLGEILRS------EKPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELGV- 176
Query: 192 IFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQT-------ENLKYIA 244
F +++D+ GG+G + + P + + DLP +T +++
Sbjct: 177 -FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFE 235
Query: 245 GDMFQYIPP----ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300
++ AD H F + +++ + G +LI+ + +N+
Sbjct: 236 KNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVK---PGGALLILTMTMND 292
Query: 301 KEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT-----HYKITNVFGLKS 354
+ + +M + G+ + DAG + T + G +S
Sbjct: 293 DRVTPAL--SADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERSIGRYTLLIGQRS 349
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 9e-10
Identities = 53/397 (13%), Positives = 112/397 (28%), Gaps = 124/397 (31%)
Query: 52 RPITLSELVSAL-KIQPTKTSNLFRFMRLLVH-MGLFSKT----------KVGGEKEEEA 99
R +L AL +++P K +L+ + KT KV + + +
Sbjct: 133 RLQPYLKLRQALLELRPAK--------NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 100 YGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDY 159
+ L C SP +L+ W +D S +
Sbjct: 185 FWLNL---------KNCNSP--ETVLEMLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQA 232
Query: 160 MNQNPGLSQRFNQAMI-----SDSEMA-IFIVKDCCR--------KIFEGLGSI----VD 201
+ S+ + ++ +++ F + C+ ++ + L + +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--CKILLTTRFKQVTDFLSAATTTHIS 290
Query: 202 VGGGNGGFSKIISEAFPG--IKCTVLDLPH-AVANMPQT---------------ENLKYI 243
+ + + ++ + C DLP + P+ +N K++
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 244 AGDMFQYI--------PPAD--AYFFKL-VF---------------HAFGDEDCLKILKK 277
D I PA+ F +L VF D + ++ K
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 278 C--REAIAGNGERGKVLIMDI--VINEKEDKHQVTEAKLL----------GDTLMSVSVD 323
+ + + I I + K + ++ D L+ +D
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 324 G------------KERTDE--EWKTLFLDAGFTHYKI 346
E + ++ +FLD F KI
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 7e-04
Identities = 45/369 (12%), Positives = 94/369 (25%), Gaps = 116/369 (31%)
Query: 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYG--LTAIS--- 106
+ I E + + + S R L+ K E Y ++ I
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 107 ---ALLIKDKSYCLSPLVSG--ILDPENIF---PLHFISKWFKGNDISVWETVH-----G 153
+++ + L + + N+ P + + + + G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 154 KN--------------------YW----------DYMNQNPGLSQRFNQAMISDSEMAIF 183
K +W + L + + S S+ +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 184 I------VKDCCRKIF------EGLGSIV--DVGGGNGGFSKIISEAFPGIKCTVL---- 225
I ++ R++ L +V +V + AF + C +L
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCL--LVLLNV------QNAKAWNAF-NLSCKILLTTR 273
Query: 226 DLPHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKC------- 278
V + +I+ D ++ +L K
Sbjct: 274 F--KQVTDFLSAATTTHISLDHHS--------------MTLTPDEVKSLLLKYLDCRPQD 317
Query: 279 --REAIAGNGERGKVLIMDIVINEKEDKH-------QVTEAKLLGDTLMSVSVDGKERTD 329
RE + N + I+ D V KL T++ S++ E
Sbjct: 318 LPREVLTTN-----PRRLSIIAESIRDGLATWDNWKHVNCDKL--TTIIESSLNVLE--P 368
Query: 330 EEWKTLFLD 338
E++ +F
Sbjct: 369 AEYRKMFDR 377
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 2e-09
Identities = 32/199 (16%), Positives = 57/199 (28%), Gaps = 29/199 (14%)
Query: 153 GKNYWDYMNQNP-GLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSK 211
YW + G+ + D E + + +D G G G +K
Sbjct: 53 ALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGT---SRALDCGAGIGRITK 109
Query: 212 IISEAFPGIKCTVLD-----LPHAVANMPQTENLKYIAGDMFQYIPPA---DAYFFKLVF 263
+ +L+ L A + K+I M P D +
Sbjct: 110 NLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTA 168
Query: 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVD 323
D D +K K C++A+ G + + ++ L
Sbjct: 169 IYLTDADFVKFFKHCQQALT---PNGYIFFKENCSTGDRFLVDKEDSSL----------- 214
Query: 324 GKERTDEEWKTLFLDAGFT 342
R+D +K LF ++G
Sbjct: 215 --TRSDIHYKRLFNESGVR 231
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-07
Identities = 30/205 (14%), Positives = 63/205 (30%), Gaps = 35/205 (17%)
Query: 153 GKNYWDYMNQNP----GLSQRFNQAMISDSEMAIFIVKDCCRKI-FEGLGSIVDVGGGNG 207
K YW + G + I+ S F+ + G +D G G G
Sbjct: 34 AKTYWKQIPPTVDGMLGGYGHISSIDINSSRK--FLQRFLREGPNKTGTSCALDCGAGIG 91
Query: 208 GFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIPPADAY--- 257
+K + + ++D+ + Y + + P D+Y
Sbjct: 92 RITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVI 150
Query: 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL 317
+ + V D+ + L++C+ ++ G ++I D + E V +
Sbjct: 151 WIQWVIGHLTDQHLAEFLRRCKGSLR---PNGIIVIKDNMAQEGVILDDVDSSVC----- 202
Query: 318 MSVSVDGKERTDEEWKTLFLDAGFT 342
R + + + AG +
Sbjct: 203 ---------RDLDVVRRIICSAGLS 218
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 24/167 (14%)
Query: 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLD-----LPHAVANMPQTENLKYIAGDMFQYI 251
I+D+G G G S + E +P T++D L A +KYI D +Y
Sbjct: 46 PDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYD 105
Query: 252 PP--ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV---------INE 300
D L H DED ++ K+ + + G + D+V +N+
Sbjct: 106 FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKES---GIFINADLVHGETAFIENLNK 162
Query: 301 KEDKHQVTEAKLLGD----TLMSVSVDGKERTDEEWKTLFLDAGFTH 343
+ V + L + +D K+ + +AGF
Sbjct: 163 TIWRQYVENSGLTEEEIAAGYERSKLD-KDIEMNQQLNWLKEAGFRD 208
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 7e-07
Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 16/155 (10%)
Query: 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLD-----LPHAVANMPQTENLKYIAGDMFQYI 251
G++++ G G G + + A G ++ A +P + GD +
Sbjct: 47 GNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP--KEFSITEGDFLSFE 102
Query: 252 PPA--DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTE 309
P D FH D++ + K + + + GK++ D + +++ + E
Sbjct: 103 VPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLN---KGGKIVFADTIFADQDAYDKTVE 159
Query: 310 A--KLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT 342
A + L + +T+F + GF
Sbjct: 160 AAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFH 194
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 15/156 (9%)
Query: 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PH--AVANMPQTENLKYIAGDMFQYIPP 253
G ++++ G G +++ +S + T LD A A +N+++ D+F + P
Sbjct: 48 GDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPD 105
Query: 254 A--DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKE-----DKHQ 306
DA FF D+ + R A+A G V +D+ +E+ D
Sbjct: 106 RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGG---VVEFVDVTDHERRLEQQDDSEP 162
Query: 307 VTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT 342
+ S + R+ E G++
Sbjct: 163 EVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWS 198
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 4e-05
Identities = 22/161 (13%), Positives = 46/161 (28%), Gaps = 27/161 (16%)
Query: 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLD-----LPHAVANMPQTENLKYIAGDMFQYI 251
+ D+G G G ++++++ + T +D L A +P N + D+ +
Sbjct: 35 LNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP---NTNFGKADLATWK 91
Query: 252 PPA--DAYFFKLVFHAFGD-----EDCLKILKKCRE---AIAGNGERGKVLIMDIVINEK 301
P D + VF D + L+ + N + + M +
Sbjct: 92 PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGG 151
Query: 302 EDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT 342
K + L L ++
Sbjct: 152 PWKDAFSGGGLRRKPLPPP---------SDYFNALSPKSSR 183
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 6e-05
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 30/170 (17%)
Query: 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL--------PHAVANMPQTENLKYIAGDMF 248
G+ +D+G G G S +++ LD +A+ + ++ + GD
Sbjct: 45 GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD-V 102
Query: 249 QYIPPADAYF----FKLVFHAFGD-EDCLK----ILKKCREAIAGNGERGKVLIMDIVIN 299
IP D Y + + D + ILK G GK I N
Sbjct: 103 HNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKS--------G--GKTYIGGGFGN 152
Query: 300 EK-EDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITN 348
++ D + D + + E ++ + + G + Y+I
Sbjct: 153 KELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIIL 202
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 33/211 (15%), Positives = 63/211 (29%), Gaps = 40/211 (18%)
Query: 154 KNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKII 213
+ WD + N + DS I+ + + + ++DVG G+G + +
Sbjct: 17 EKKWDSSAE----FWNQNSQEMWDSGSRSTIIPFFEQYVKKE-AEVLDVGCGDGYGTYKL 71
Query: 214 SEAFPGIKCTVLD-----LPHAVANMPQTENLKYIAGDMFQYIPPADAYF----FKLVFH 264
S G K +D + + +L +I GD+ +P + F
Sbjct: 72 SRT--GYKAVGVDISEVMIQKGKERG-EGPDLSFIKGDL-SSLPFENEQFEAIMAINSLE 127
Query: 265 AFGDED-----CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMS 319
+ ++LK G I + K ++ L
Sbjct: 128 WTEEPLRALNEIKRVLKS----------DGYACIAILGPTAKPRENSYPR-------LYG 170
Query: 320 VSVDGKERTDEEWKTLFLDAGFTHYKITNVF 350
V E++ L + GF V+
Sbjct: 171 KDVVCNTMMPWEFEQLVKEQGFKVVDGIGVY 201
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 5e-04
Identities = 17/123 (13%), Positives = 31/123 (25%), Gaps = 16/123 (13%)
Query: 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLD-----LPHAVANMPQTE- 238
+ + C + +D+ G G ++ + +D L A
Sbjct: 27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL 84
Query: 239 NLKYIAGDM--FQYIPPADA--YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294
+ D+ D + +D K K + G V I
Sbjct: 85 KPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGG----VFIF 140
Query: 295 DIV 297
DI
Sbjct: 141 DIN 143
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.87 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.82 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.77 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.77 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.75 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.75 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.75 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.74 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.74 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.73 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.73 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.72 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.72 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.72 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.71 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.71 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.71 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.71 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.7 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.7 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.7 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.7 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.7 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.69 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.69 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.69 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.69 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.69 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.68 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.68 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.68 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.68 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.68 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.67 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.67 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.67 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.67 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.66 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.66 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.66 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.66 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.65 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.65 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.65 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.65 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.64 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.63 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.63 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.62 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.62 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.62 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.61 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.61 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.61 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.61 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.6 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.59 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.58 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.57 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.57 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.57 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.57 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.57 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.55 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.55 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.54 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.53 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.53 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.53 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.52 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.52 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.51 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.5 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.5 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.5 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.49 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.49 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.47 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.47 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.46 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.45 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.44 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.44 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.42 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.41 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.41 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.41 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.39 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.39 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.38 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.37 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.36 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.36 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.36 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.35 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.35 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.35 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.34 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.34 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.34 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.34 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.34 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.33 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.33 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.32 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.32 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.32 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.32 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.31 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.31 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.31 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.3 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.3 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.29 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.29 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.29 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.29 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.28 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.28 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.28 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.27 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.27 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.26 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.24 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.23 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.23 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.23 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.22 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.22 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.22 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.22 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.2 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.2 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.19 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.19 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.19 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.18 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.18 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.18 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.18 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.17 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.17 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.17 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.16 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.16 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.15 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.15 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.15 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.15 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.15 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.14 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.14 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.14 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.13 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.13 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.12 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.11 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.1 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.1 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.09 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.09 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.08 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.07 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.07 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.06 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.06 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.06 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.06 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.05 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.05 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.04 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.04 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.03 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.03 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.03 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.03 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.02 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.01 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.01 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.0 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.0 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.0 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.0 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.0 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.0 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.0 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.99 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.97 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.96 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.96 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.95 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.95 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.94 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.94 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.94 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.93 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.93 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.93 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.93 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.92 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.92 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.91 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.91 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.91 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.9 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.89 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.86 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.85 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.85 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.84 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.82 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.82 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.82 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.81 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.79 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.77 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.77 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.73 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.72 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.71 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.68 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.67 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.66 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.6 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.59 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.57 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.57 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.55 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.54 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.53 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.52 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.5 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.5 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.49 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.46 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.45 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.44 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.44 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.42 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.39 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.38 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.38 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.35 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.33 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.31 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.3 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.29 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.27 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.26 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.26 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.25 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.25 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.24 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.24 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.19 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.15 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.15 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.07 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.05 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.01 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.99 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.97 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.89 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.84 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.83 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.8 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.76 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.7 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.67 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.63 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.58 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.57 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.53 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.51 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.44 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.44 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.41 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.4 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.37 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.32 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.32 | |
| 3b73_A | 111 | PHIH1 repressor-like protein; winged-helix-turn-he | 97.14 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 97.08 | |
| 1y0u_A | 96 | Arsenical resistance operon repressor, putative; s | 96.95 | |
| 3pqk_A | 102 | Biofilm growth-associated repressor; helix-turn-he | 96.78 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.74 | |
| 1xmk_A | 79 | Double-stranded RNA-specific adenosine deaminase; | 96.58 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.57 | |
| 3mq0_A | 275 | Transcriptional repressor of the blcabc operon; he | 96.47 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.42 | |
| 2hzt_A | 107 | Putative HTH-type transcriptional regulator YTCD; | 96.42 | |
| 3ech_A | 142 | MEXR, multidrug resistance operon repressor; winge | 96.42 | |
| 3jth_A | 98 | Transcription activator HLYU; transcription factor | 96.41 | |
| 2oqg_A | 114 | Possible transcriptional regulator, ARSR family P; | 96.31 | |
| 3f6o_A | 118 | Probable transcriptional regulator, ARSR family pr | 96.29 | |
| 1u2w_A | 122 | CADC repressor, cadmium efflux system accessory pr | 96.22 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.16 | |
| 1ub9_A | 100 | Hypothetical protein PH1061; helix-turn-helix moti | 96.14 | |
| 3f6v_A | 151 | Possible transcriptional regulator, ARSR family pr | 96.1 | |
| 3cuo_A | 99 | Uncharacterized HTH-type transcriptional regulato; | 96.05 | |
| 4a5n_A | 131 | Uncharacterized HTH-type transcriptional regulato; | 96.03 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.01 | |
| 3r4k_A | 260 | Transcriptional regulator, ICLR family; DNA/RNA-bi | 95.99 | |
| 3df8_A | 111 | Possible HXLR family transcriptional factor; APC89 | 95.99 | |
| 1z7u_A | 112 | Hypothetical protein EF0647; winged-helix-turn-hel | 95.99 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.97 | |
| 2xrn_A | 241 | HTH-type transcriptional regulator TTGV; DNA-bindi | 95.96 | |
| 1r1u_A | 106 | CZRA, repressor protein; zinc, DNA binding, transc | 95.96 | |
| 2f2e_A | 146 | PA1607; transcription factor, helix-TRUN-helix, AP | 95.87 | |
| 1yyv_A | 131 | Putative transcriptional regulator; reductive meth | 95.86 | |
| 2kko_A | 108 | Possible transcriptional regulatory protein (possi | 95.85 | |
| 1mkm_A | 249 | ICLR transcriptional regulator; structural genomic | 95.85 | |
| 3bdd_A | 142 | Regulatory protein MARR; putative multiple antibio | 95.81 | |
| 2fsw_A | 107 | PG_0823 protein; alpha-beta structure, helix-turn- | 95.81 | |
| 2o0y_A | 260 | Transcriptional regulator; ICLR-family, structural | 95.77 | |
| 1qgp_A | 77 | Protein (double stranded RNA adenosine deaminase); | 95.69 | |
| 2jsc_A | 118 | Transcriptional regulator RV1994C/MT2050; cadmium, | 95.67 | |
| 1r7j_A | 95 | Conserved hypothetical protein SSO10A; winged heli | 95.67 | |
| 3bja_A | 139 | Transcriptional regulator, MARR family, putative; | 95.63 | |
| 1oyi_A | 82 | Double-stranded RNA-binding protein; (alpha+beta) | 95.61 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.59 | |
| 2g7u_A | 257 | Transcriptional regulator; ICLR family, structural | 95.58 | |
| 1qbj_A | 81 | Protein (double-stranded RNA specific adenosine D | 95.53 | |
| 3g3z_A | 145 | NMB1585, transcriptional regulator, MARR family; t | 95.44 | |
| 1r1t_A | 122 | Transcriptional repressor SMTB; zinc, transcriptio | 95.41 | |
| 2jt1_A | 77 | PEFI protein; solution structure, winged helix-tur | 95.4 | |
| 3k0l_A | 162 | Repressor protein; helix-turn-helix, structural ge | 95.38 | |
| 1on2_A | 142 | Transcriptional regulator MNTR; helix-turn-helix, | 95.38 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.36 | |
| 3e6m_A | 161 | MARR family transcriptional regulator; APC88769, s | 95.35 | |
| 2fu4_A | 83 | Ferric uptake regulation protein; DNA binding doma | 95.35 | |
| 2wte_A | 244 | CSA3; antiviral protein, viral resistance, winged | 95.33 | |
| 2ia2_A | 265 | Putative transcriptional regulator; SAD, PSI-2, st | 95.29 | |
| 3nrv_A | 148 | Putative transcriptional regulator (MARR/EMRR FAM; | 95.24 | |
| 3cdh_A | 155 | Transcriptional regulator, MARR family; helix-turn | 95.2 | |
| 3s2w_A | 159 | Transcriptional regulator, MARR family; structural | 95.19 | |
| 2pg4_A | 95 | Uncharacterized protein; structural genomics, join | 95.17 | |
| 1xn7_A | 78 | Hypothetical protein YHGG; alpha+beta, GFT structu | 95.14 | |
| 3f3x_A | 144 | Transcriptional regulator, MARR family, putative; | 95.12 | |
| 3oop_A | 143 | LIN2960 protein; protein structure initiative, PSI | 95.08 | |
| 1tbx_A | 99 | ORF F-93, hypothetical 11.0 kDa protein; sulfolobu | 95.07 | |
| 2qww_A | 154 | Transcriptional regulator, MARR family; YP_013417. | 95.06 | |
| 2nyx_A | 168 | Probable transcriptional regulatory protein, RV14; | 95.06 | |
| 2y75_A | 129 | HTH-type transcriptional regulator CYMR; DNA bindi | 95.05 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.0 | |
| 2k02_A | 87 | Ferrous iron transport protein C; FEOC, iron-sulfu | 94.99 | |
| 2nnn_A | 140 | Probable transcriptional regulator; structural gen | 94.99 | |
| 2hr3_A | 147 | Probable transcriptional regulator; MCSG, structur | 94.92 | |
| 2gxg_A | 146 | 146AA long hypothetical transcriptional regulator; | 94.89 | |
| 3bj6_A | 152 | Transcriptional regulator, MARR family; helix-turn | 94.86 | |
| 3fm5_A | 150 | Transcriptional regulator; MCSG, PF04017, PSI, MAR | 94.84 | |
| 2htj_A | 81 | P fimbrial regulatory protein KS71A; winged helix- | 94.84 | |
| 3bro_A | 141 | Transcriptional regulator; helix_TURN_helix, multi | 94.82 | |
| 3kp7_A | 151 | Transcriptional regulator TCAR; multiple drug resi | 94.82 | |
| 1lj9_A | 144 | Transcriptional regulator SLYA; HTH DNA binding pr | 94.81 | |
| 3hsr_A | 140 | HTH-type transcriptional regulator SARZ; helix-tur | 94.79 | |
| 3boq_A | 160 | Transcriptional regulator, MARR family; MARR famil | 94.78 | |
| 3eco_A | 139 | MEPR; mutlidrug efflux pump regulator winged helix | 94.78 | |
| 1jgs_A | 138 | Multiple antibiotic resistance protein MARR; trans | 94.77 | |
| 2fbh_A | 146 | Transcriptional regulator PA3341; MARR, transcript | 94.75 | |
| 3deu_A | 166 | Transcriptional regulator SLYA; MARR, WING-helix, | 94.75 | |
| 2rdp_A | 150 | Putative transcriptional regulator MARR; PFAM PF01 | 94.65 | |
| 2eth_A | 154 | Transcriptional regulator, putative, MAR family; M | 94.6 | |
| 2fa5_A | 162 | Transcriptional regulator MARR/EMRR family; multip | 94.56 | |
| 2bv6_A | 142 | MGRA, HTH-type transcriptional regulator MGRA; mul | 94.55 | |
| 4hbl_A | 149 | Transcriptional regulator, MARR family; HTH, trans | 94.52 | |
| 1s3j_A | 155 | YUSO protein; structural genomics, MARR transcript | 94.51 | |
| 3bpv_A | 138 | Transcriptional regulator; MARR, DNA binding, tran | 94.45 | |
| 3tgn_A | 146 | ADC operon repressor ADCR; helix-turn-helix, trans | 94.45 | |
| 2x4h_A | 139 | Hypothetical protein SSO2273; transcription; 2.30A | 94.41 | |
| 3cjn_A | 162 | Transcriptional regulator, MARR family; silicibact | 94.29 | |
| 4aik_A | 151 | Transcriptional regulator SLYA; transcription, tra | 94.28 | |
| 2pex_A | 153 | Transcriptional regulator OHRR; transcription regu | 94.25 | |
| 3jw4_A | 148 | Transcriptional regulator, MARR/EMRR family; DNA-b | 94.22 | |
| 2a61_A | 145 | Transcriptional regulator TM0710; APC4350, MCSG, m | 94.19 | |
| 1z91_A | 147 | Organic hydroperoxide resistance transcriptional; | 94.18 | |
| 1sfx_A | 109 | Conserved hypothetical protein AF2008; structural | 94.15 | |
| 1ylf_A | 149 | RRF2 family protein; structural genomics, transcri | 94.09 | |
| 3k69_A | 162 | Putative transcription regulator; putative transcr | 94.09 | |
| 3lwf_A | 159 | LIN1550 protein, putative transcriptional regulato | 94.03 | |
| 2h09_A | 155 | Transcriptional regulator MNTR; transcription regu | 93.98 | |
| 2lkp_A | 119 | Transcriptional regulator, ARSR family; symmetric | 93.9 | |
| 2qvo_A | 95 | Uncharacterized protein AF_1382; PSI, structural g | 93.89 | |
| 2frh_A | 127 | SARA, staphylococcal accessory regulator A; winged | 93.85 | |
| 2fbi_A | 142 | Probable transcriptional regulator; MARR, APC5816, | 93.82 | |
| 3nqo_A | 189 | MARR-family transcriptional regulator; structural | 93.79 | |
| 2obp_A | 96 | Putative DNA-binding protein; structural genomics, | 93.77 | |
| 1xd7_A | 145 | YWNA; structural genomics, protein structure initi | 93.75 | |
| 2zkz_A | 99 | Transcriptional repressor PAGR; protein-DNA, HTH m | 93.74 | |
| 3hrs_A | 214 | Metalloregulator SCAR; DTXR/MNTR family member, tr | 93.71 | |
| 1bja_A | 95 | Transcription regulatory protein MOTA; activation | 93.67 | |
| 3r0a_A | 123 | Putative transcriptional regulator; structural gen | 93.65 | |
| 2fbk_A | 181 | Transcriptional regulator, MARR family; winged-hel | 93.57 | |
| 3t8r_A | 143 | Staphylococcus aureus CYMR; transcriptional regula | 93.53 | |
| 3u2r_A | 168 | Regulatory protein MARR; structural genomics, PSI- | 93.17 | |
| 2lnb_A | 80 | Z-DNA-binding protein 1; structural genomics, nort | 92.88 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 92.63 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 92.48 | |
| 2p4w_A | 202 | Transcriptional regulatory protein ARSR family; ar | 92.41 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 92.38 | |
| 3i71_A | 68 | Ethanolamine utilization protein EUTK; helix-turn- | 92.36 | |
| 4g6q_A | 182 | Putative uncharacterized protein; structural genom | 91.69 | |
| 2fxa_A | 207 | Protease production regulatory protein HPR; protea | 91.69 | |
| 3u1d_A | 151 | Uncharacterized protein; GNTR-superfamily, structu | 91.54 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 91.39 | |
| 4b8x_A | 147 | SCO5413, possible MARR-transcriptional regulator; | 91.22 | |
| 1okr_A | 123 | MECI, methicillin resistance regulatory protein ME | 91.05 | |
| 2o03_A | 131 | Probable zinc uptake regulation protein FURB; DNA- | 91.02 | |
| 1q1h_A | 110 | TFE, transcription factor E, TFE; TFIIE, transcrip | 90.88 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 90.75 | |
| 2pn6_A | 150 | ST1022, 150AA long hypothetical transcriptional re | 90.56 | |
| 1uly_A | 192 | Hypothetical protein PH1932; helix-turn-helix, str | 90.55 | |
| 2fe3_A | 145 | Peroxide operon regulator; oxidative stress regula | 90.52 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 90.46 | |
| 2cfx_A | 144 | HTH-type transcriptional regulator LRPC; transcrip | 90.37 | |
| 2esh_A | 118 | Conserved hypothetical protein TM0937; APC5794, st | 90.28 | |
| 2w25_A | 150 | Probable transcriptional regulatory protein; trans | 90.25 | |
| 1p6r_A | 82 | Penicillinase repressor; transcription regulation, | 89.91 | |
| 2xvc_A | 59 | ESCRT-III, SSO0910; cell cycle, cell division, cyt | 89.9 | |
| 4esf_A | 117 | PADR-like transcriptional regulator; PADR family, | 89.84 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 89.7 | |
| 4fx0_A | 148 | Probable transcriptional repressor protein; helix- | 89.6 | |
| 2p5v_A | 162 | Transcriptional regulator, LRP/ASNC family; NMB057 | 89.54 | |
| 2cg4_A | 152 | Regulatory protein ASNC; DNA binding, FFRP, LRP fa | 89.24 | |
| 2d1h_A | 109 | ST1889, 109AA long hypothetical transcriptional re | 89.16 | |
| 2k4b_A | 99 | Transcriptional regulator; DNA binding protein, wi | 89.1 | |
| 3i4p_A | 162 | Transcriptional regulator, ASNC family; PSI, struc | 88.91 | |
| 2cyy_A | 151 | Putative HTH-type transcriptional regulator PH151; | 88.87 | |
| 1ku9_A | 152 | Hypothetical protein MJ223; putative transcription | 88.59 | |
| 2dbb_A | 151 | Putative HTH-type transcriptional regulator PH006; | 88.55 | |
| 1i1g_A | 141 | Transcriptional regulator LRPA; helix-turn-helix, | 88.5 | |
| 1j5y_A | 187 | Transcriptional regulator, biotin repressor famil; | 88.47 | |
| 3cta_A | 230 | Riboflavin kinase; structural genomics, transferas | 88.46 | |
| 2ia0_A | 171 | Putative HTH-type transcriptional regulator PF086; | 88.35 | |
| 2e1c_A | 171 | Putative HTH-type transcriptional regulator PH151; | 88.28 | |
| 1v4r_A | 102 | Transcriptional repressor; helix-turn-helix, winge | 88.16 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 88.06 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 88.04 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 88.03 | |
| 2xig_A | 150 | Ferric uptake regulation protein; hpfur, transcrip | 87.77 | |
| 1fx7_A | 230 | Iron-dependent repressor IDER; DTXR, iron-dependen | 87.48 | |
| 3k2z_A | 196 | LEXA repressor; winged helix-turn-helix, SOS syste | 87.09 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 86.8 | |
| 1mzb_A | 136 | Ferric uptake regulation protein; ferric uptake re | 86.76 | |
| 2vn2_A | 128 | DNAD, chromosome replication initiation protein; D | 86.48 | |
| 3mwm_A | 139 | ZUR, putative metal uptake regulation protein; FUR | 86.35 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 86.2 | |
| 1sfu_A | 75 | 34L protein; protein/Z-DNA complex, DNA binding pr | 86.16 | |
| 3hhh_A | 116 | Transcriptional regulator, PADR family; PF03551, s | 86.1 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 85.97 | |
| 3f8b_A | 116 | Transcriptional regulator, PADR-like family; winge | 85.91 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 85.67 | |
| 3elk_A | 117 | Putative transcriptional regulator TA0346; structu | 85.66 | |
| 2qq9_A | 226 | Diphtheria toxin repressor; regulator, DTXR, helix | 85.55 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 85.49 | |
| 2p8t_A | 200 | Hypothetical protein PH0730; pyrococcus horikoshii | 85.35 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 84.95 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 84.69 | |
| 2dk5_A | 91 | DNA-directed RNA polymerase III 39 kDa polypeptide | 84.57 | |
| 1hsj_A | 487 | Fusion protein consisting of staphylococcus access | 84.52 | |
| 2pjp_A | 121 | Selenocysteine-specific elongation factor; SELB, p | 84.47 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 84.46 | |
| 1yg2_A | 179 | Gene activator APHA; virulence factor, winged heli | 84.43 | |
| 2g9w_A | 138 | Conserved hypothetical protein; DNA-binding domain | 84.02 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 83.68 | |
| 1xma_A | 145 | Predicted transcriptional regulator; southea colla | 83.62 | |
| 1cf7_A | 76 | Protein (transcription factor E2F-4); E2F, winged- | 83.47 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 83.38 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 83.01 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 82.67 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 82.42 | |
| 2v79_A | 135 | DNA replication protein DNAD; primosome, DNA-bindi | 82.26 | |
| 2w57_A | 150 | Ferric uptake regulation protein; gene regulation, | 82.18 | |
| 1bia_A | 321 | BIRA bifunctional protein; transcription regulatio | 81.99 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 81.98 | |
| 3l7w_A | 108 | Putative uncharacterized protein SMU.1704; PADR, t | 81.96 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 81.76 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 81.53 | |
| 2o0m_A | 345 | Transcriptional regulator, SORC family; structural | 81.47 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 81.4 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 80.99 | |
| 2b0l_A | 102 | GTP-sensing transcriptional pleiotropic repressor; | 80.79 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 80.28 | |
| 1sd4_A | 126 | Penicillinase repressor; BLAI, MECI, methicillin, | 80.26 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-54 Score=404.24 Aligned_cols=328 Identities=19% Similarity=0.306 Sum_probs=291.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCc
Q 018116 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKE 96 (360)
Q Consensus 17 ~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 96 (360)
++...+++++.||+.+++|++|+++||||.|.+.++|+|++|||+++|+ +++.+.||||+|++.|++++..+ +.
T Consensus 7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~~---~~ 80 (353)
T 4a6d_A 7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA---SAHGTELLLDICVSLKLLKVETR---GG 80 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE---TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc---CHHHHHHHHHHHHHCCCEEEecc---Cc
Confidence 6777899999999999999999999999999875579999999999999 67999999999999999987542 11
Q ss_pred ccceecchhhh-hhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhC---CChhHHhhcCCcHHHHHHH
Q 018116 97 EEAYGLTAISA-LLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHG---KNYWDYMNQNPGLSQRFNQ 172 (360)
Q Consensus 97 ~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~ 172 (360)
.+.|++|+.+. +|.++++.++..++.+.. +..+..|..|.+.+++|+ +++...+| .++|+++.++++....|.+
T Consensus 81 ~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~ 158 (353)
T 4a6d_A 81 KAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQFMQ 158 (353)
T ss_dssp EEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHHHH
T ss_pred cceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHHHH
Confidence 46799999987 677788888888877653 346788999999999998 67887777 3789999999999999999
Q ss_pred HhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC------CCCeEEEeCC
Q 018116 173 AMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ------TENLKYIAGD 246 (360)
Q Consensus 173 ~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~ri~~~~~D 246 (360)
+|..........+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||+++.+|
T Consensus 159 aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD 236 (353)
T 4a6d_A 159 ALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGD 236 (353)
T ss_dssp HHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESC
T ss_pred HHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCc
Confidence 999988777788888888 78889999999999999999999999999999999999887653 5899999999
Q ss_pred CCC-CCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCc
Q 018116 247 MFQ-YIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGK 325 (360)
Q Consensus 247 ~~~-~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~ 325 (360)
+++ +.|++|+|+++++||+|+|++++++|++++++|+| ||+|+|+|.+.++....+ .....+|+.|+...+|+
T Consensus 237 ~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~~g~ 310 (353)
T 4a6d_A 237 FFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVIESLLDEDRRGP---LLTQLYSLNMLVQTEGQ 310 (353)
T ss_dssp TTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSSSCC
T ss_pred cccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhCCCc
Confidence 998 46689999999999999999999999999999999 999999999988765543 34467899999888999
Q ss_pred ccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 326 ERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 326 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
.||.+||+++|+++||+.++++++++..++|+|+|
T Consensus 311 ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 311 ERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 99999999999999999999999999999999987
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-52 Score=391.90 Aligned_cols=345 Identities=24% Similarity=0.434 Sum_probs=297.8
Q ss_pred chhhhcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCC-CCCCHHHHHHHcCC--CCCCcccHHHHHHHHHhCCcee
Q 018116 11 SVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHG-RPITLSELVSALKI--QPTKTSNLFRFMRLLVHMGLFS 87 (360)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~-~~~t~~ela~~~~~--~p~~~~~l~~lL~~L~~~g~l~ 87 (360)
...+..++...++++++|++.+++|++|+++|||++|..++ +|+|++|||+++|+ +|.++..++||||+|++.|+|+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~ 92 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVT 92 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEE
Confidence 55667788999999999999999999999999999998753 69999999999997 6533449999999999999999
Q ss_pred ccccC-CCC-cccceecchhhhhhhcCC-CCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCC
Q 018116 88 KTKVG-GEK-EEEAYGLTAISALLIKDK-SYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNP 164 (360)
Q Consensus 88 ~~~~~-~~~-~~~~y~~t~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~ 164 (360)
++... ++| .+++|++|+.++.|..++ +.++.+++.+...+.++..|.+|.+++|+|. +||+..+|.++|+++.++|
T Consensus 93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~ 171 (364)
T 3p9c_A 93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDP 171 (364)
T ss_dssp EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCH
T ss_pred EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCH
Confidence 86210 000 026899999999887654 5688888777656667889999999999987 7999999999999999999
Q ss_pred cHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 018116 165 GLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIA 244 (360)
Q Consensus 165 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~ 244 (360)
+..+.|+++|..........+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+|++|+.
T Consensus 172 ~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 250 (364)
T 3p9c_A 172 RFNRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVG 250 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEE
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEe
Confidence 99999999999887766677777775 25678999999999999999999999999999999999999998889999999
Q ss_pred CCCCCCCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc-ccC
Q 018116 245 GDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV-SVD 323 (360)
Q Consensus 245 ~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~ 323 (360)
+|+++++|..|+|++++++|+|+++++.++|++++++|+| ||+|+|.|.+.++.............+++.|+. ..+
T Consensus 251 ~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~ 327 (364)
T 3p9c_A 251 GDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPG 327 (364)
T ss_dssp CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred CCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccC
Confidence 9999877766999999999999999999999999999999 999999999987754432122233567888774 468
Q ss_pred CcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 324 GKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 324 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
|+.||.++|+++|+++||+.+++.++++..++||++|
T Consensus 328 g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 328 GRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp CCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 9999999999999999999999999999999999997
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-51 Score=387.25 Aligned_cols=345 Identities=28% Similarity=0.476 Sum_probs=294.1
Q ss_pred chhhhcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhC---CCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCce
Q 018116 11 SVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSH---GRPITLSELVSALK-IQPTKTSNLFRFMRLLVHMGLF 86 (360)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~---~~~~t~~ela~~~~-~~p~~~~~l~~lL~~L~~~g~l 86 (360)
.+.+..++...+++++.|++.+++|++|+++|||+.|... ++|+|++|||+++| .+|.+++.+.||||+|++.|+|
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll 93 (368)
T 3reo_A 14 THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVV 93 (368)
T ss_dssp ---CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCe
Confidence 5567788999999999999999999999999999999873 24799999999998 4653446999999999999999
Q ss_pred eccccC-CCC-cccceecchhhhhhhcC-CCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcC
Q 018116 87 SKTKVG-GEK-EEEAYGLTAISALLIKD-KSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQN 163 (360)
Q Consensus 87 ~~~~~~-~~~-~~~~y~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~ 163 (360)
++.... ++| .+++|++|+.++.|..+ ++.++++++.+...+.++..|.+|.+++++|. ++|+..+|.++|+|+.++
T Consensus 94 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~ 172 (368)
T 3reo_A 94 TYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTD 172 (368)
T ss_dssp EEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTC
T ss_pred EEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhC
Confidence 986200 000 02689999999977754 46788888877656667889999999999987 799999999999999999
Q ss_pred CcHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEE
Q 018116 164 PGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYI 243 (360)
Q Consensus 164 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~ 243 (360)
++..+.|.++|..........+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++++|+
T Consensus 173 ~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~ 251 (368)
T 3reo_A 173 HRINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHL 251 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEE
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEE
Confidence 999999999999887766677777765 2567799999999999999999999999999999999999999888899999
Q ss_pred eCCCCCCCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc-c
Q 018116 244 AGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS-V 322 (360)
Q Consensus 244 ~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 322 (360)
.+|+++++|..|+|++.+++|+|+++++.++|++++++|+| ||+|+|.|.+.++.............+++.|+.. .
T Consensus 252 ~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 328 (368)
T 3reo_A 252 GGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNP 328 (368)
T ss_dssp ECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSS
T ss_pred ecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcC
Confidence 99999877766999999999999999999999999999999 9999999999877554321222345677777754 4
Q ss_pred CCcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 323 DGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 323 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
+|+.||.++|+++|+++||+.+++.+..+..++|+++|
T Consensus 329 ~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 329 GGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp BCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 88999999999999999999999999999999999987
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-51 Score=383.51 Aligned_cols=347 Identities=45% Similarity=0.837 Sum_probs=296.9
Q ss_pred ccccccCCCchhhhcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHH
Q 018116 2 DTIENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLV 81 (360)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~ 81 (360)
.|||... ..+++++..++++++.+++.+++|++++++|||+.|+..++|.|++|||+++|++|.+++.+.||||+|+
T Consensus 3 ~~~~~~~---~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~ 79 (352)
T 1fp2_A 3 SSINGRK---PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLA 79 (352)
T ss_dssp -----CC---STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHH
T ss_pred ccccCCC---hHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHH
Confidence 3677744 4788899999999999999999999999999999998743599999999999998766889999999999
Q ss_pred hCCceecc--ccCCCCcccceecchhhhhhhcCCCCChhhhhhhhcCccccchhhhHHHhhh-cCCCchhHHhhCCChhH
Q 018116 82 HMGLFSKT--KVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFK-GNDISVWETVHGKNYWD 158 (360)
Q Consensus 82 ~~g~l~~~--~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~~~~~~~~g~~~~~ 158 (360)
+.|+|++. + +++|++|+.++.|..+++.++++++.+..++.++..|.+|+++++ +|. ++|+..+|.++|+
T Consensus 80 ~~gll~~~~~~------~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~ 152 (352)
T 1fp2_A 80 HNGFFEIITKE------EESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWD 152 (352)
T ss_dssp HTTSEEEEESS------SEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHH
T ss_pred hCCeEEEecCC------CCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHH
Confidence 99999987 3 489999999999998887788888877655556788999999999 665 7899889999999
Q ss_pred HhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCC
Q 018116 159 YMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTE 238 (360)
Q Consensus 159 ~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ 238 (360)
++.++|+....|.+.|........+. +..+++.+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++..
T Consensus 153 ~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ 231 (352)
T 1fp2_A 153 FLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSN 231 (352)
T ss_dssp HHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBT
T ss_pred HHHhChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCC
Confidence 99999999999999999887666555 77773336788999999999999999999999999999999999999998767
Q ss_pred CeEEEeCCCCCCCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh
Q 018116 239 NLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM 318 (360)
Q Consensus 239 ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~ 318 (360)
+++++.+|+++++|+||+|++.+++|||+++++.++|++++++|+|+++||+|+|.|...++....+........+++.|
T Consensus 232 ~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~ 311 (352)
T 1fp2_A 232 NLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNM 311 (352)
T ss_dssp TEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHG
T ss_pred CcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHH
Confidence 79999999988777899999999999999999999999999999972237999999998876543211112334567766
Q ss_pred hcccCCcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 319 SVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 319 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
+. .+++.++.++|.++|+++||+.+++.+.++..++|+++|
T Consensus 312 ~~-~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 312 AC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp GG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred Hh-ccCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 65 558889999999999999999999999988889999987
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=379.86 Aligned_cols=348 Identities=48% Similarity=0.816 Sum_probs=297.6
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecccc
Q 018116 12 VRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKV 91 (360)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~ 91 (360)
.++++++..++++++.+++.+++|++++++|||+.|+..++|.|++|||+++|++|.+++.+.||||+|++.|+|++...
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~ 83 (358)
T 1zg3_A 4 ESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIV 83 (358)
T ss_dssp TSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecc
Confidence 36788999999999999999999999999999999987435999999999999987678999999999999999998710
Q ss_pred --CC-CCc-ccceecchhhhhhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCC-CchhHHhhCCChhHHhhcCCcH
Q 018116 92 --GG-EKE-EEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGND-ISVWETVHGKNYWDYMNQNPGL 166 (360)
Q Consensus 92 --~~-~~~-~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~~g~~~~~~~~~~~~~ 166 (360)
.+ +|. +++|++|+.++.|.++++.++++++.+..++.++..|.+|++++++|. .++|+.++|.++|+++.++|+.
T Consensus 84 ~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~ 163 (358)
T 1zg3_A 84 KGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSES 163 (358)
T ss_dssp CCSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGH
T ss_pred cccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhh
Confidence 00 000 278999999999988887788888887655566789999999999983 2789988999999999999999
Q ss_pred HH--HHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 018116 167 SQ--RFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIA 244 (360)
Q Consensus 167 ~~--~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~ 244 (360)
.. .|.+.|........ .+++.+++.+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++..+++++.
T Consensus 164 ~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 242 (358)
T 1zg3_A 164 STLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVG 242 (358)
T ss_dssp HHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEE
T ss_pred hhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEe
Confidence 99 99999988766555 6777774336778999999999999999999999999999999999999988767799999
Q ss_pred CCCCCCCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCC
Q 018116 245 GDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDG 324 (360)
Q Consensus 245 ~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g 324 (360)
+|+++++|+||+|++++++|+|+++++.++|++++++|+|+++||+|+|.|.+.++....+........+++.|+...+|
T Consensus 243 ~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g 322 (358)
T 1zg3_A 243 GDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLG 322 (358)
T ss_dssp CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSC
T ss_pred CccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCC
Confidence 99998777899999999999999999999999999999972126999999999876544311122345677777766678
Q ss_pred cccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 325 KERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
+.++.++|.++|+++||+.+++.+.++..++|+++|
T Consensus 323 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 323 KERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp CCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 999999999999999999999999988899999987
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-50 Score=376.65 Aligned_cols=324 Identities=25% Similarity=0.383 Sum_probs=288.4
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCC
Q 018116 15 LFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGE 94 (360)
Q Consensus 15 ~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~ 94 (360)
..++..++++++.|++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.+.||||+|++.|+|++ +
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~---~~~~l~rlLr~l~~~g~l~~-~---- 88 (348)
T 3lst_A 19 RLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGT---DADALRRVLRLLAVRDVVRE-S---- 88 (348)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE-E----
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEe-c----
Confidence 34678899999999999999999999999999986 79999999999999 56899999999999999999 4
Q ss_pred CcccceecchhhhhhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHh
Q 018116 95 KEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAM 174 (360)
Q Consensus 95 ~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 174 (360)
+++|++|+.+..|..+++.++.+++.+...+..+..|.+|++++++|. ++|+..+|.++|+++.++|+....|.++|
T Consensus 89 --~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 165 (348)
T 3lst_A 89 --DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGM 165 (348)
T ss_dssp --TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHH
T ss_pred --CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHH
Confidence 589999999998888777788888876555556789999999999887 68888899999999999999999999999
Q ss_pred hhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCeEEEeCCCCC
Q 018116 175 ISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-----TENLKYIAGDMFQ 249 (360)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~ri~~~~~D~~~ 249 (360)
..........+++.++ +++..+|||||||+|.++..+++++|+++++++|++.++...+. .+||+++.+|+++
T Consensus 166 ~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 243 (348)
T 3lst_A 166 ETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLR 243 (348)
T ss_dssp HHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTT
T ss_pred HHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCC
Confidence 9888777778888888 77889999999999999999999999999999999877763321 5789999999987
Q ss_pred CCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCH
Q 018116 250 YIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTD 329 (360)
Q Consensus 250 ~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~ 329 (360)
++|+||+|++.+++|||+++++.++|++++++|+| ||+|+|.|.+.++.... ......++.|+...+++.++.
T Consensus 244 ~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~~~~~~~t~ 316 (348)
T 3lst_A 244 EVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVVPEGNDA----HQSKEMDFMMLAARTGQERTA 316 (348)
T ss_dssp CCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEEECCBCSSSSC----CHHHHHHHHHHHTTSCCCCBH
T ss_pred CCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhhhcChhhhhcCCCcCCCH
Confidence 77799999999999999999999999999999999 99999999988776433 223466777776678899999
Q ss_pred HHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 330 EEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
++|.++|+++||+++++.+..+..++|+++|
T Consensus 317 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 317 AELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred HHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 9999999999999999999878899999986
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=375.40 Aligned_cols=322 Identities=25% Similarity=0.458 Sum_probs=288.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCc
Q 018116 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKE 96 (360)
Q Consensus 17 ~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 96 (360)
....++++++.|++.+++|++++++|||+.|+. +|.|++|||+++|+ +++.+.||||+|++.|++++.+
T Consensus 37 ~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~---~~~~l~rlLr~L~~~g~l~~~~------ 105 (369)
T 3gwz_A 37 AAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGA---HEQTLRRLLRLLATVGVFDDLG------ 105 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSSEECS------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCCEEEeC------
Confidence 556789999999999999999999999999985 79999999999999 5689999999999999999976
Q ss_pred ccc-eecchhhhhhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhh
Q 018116 97 EEA-YGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMI 175 (360)
Q Consensus 97 ~~~-y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~ 175 (360)
+++ |++|+.++.|..+++.++.+++.+...+..+..|.+|.++++++. ++|...+|.++|+++.++++....|.++|.
T Consensus 106 ~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 184 (369)
T 3gwz_A 106 HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMG 184 (369)
T ss_dssp STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHH
T ss_pred CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHH
Confidence 578 999999998888777778888877655445788999999999987 678888999999999999999999999999
Q ss_pred hCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCC
Q 018116 176 SDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMF 248 (360)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~ 248 (360)
.........+++.++ +.+..+|||||||+|.++..+++++|+++++++|++.+++.+++ .+||+|+.+|++
T Consensus 185 ~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~ 262 (369)
T 3gwz_A 185 SVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFF 262 (369)
T ss_dssp HHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCC
Confidence 887777777888887 67889999999999999999999999999999999888887763 578999999999
Q ss_pred CCCC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCccc
Q 018116 249 QYIP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKER 327 (360)
Q Consensus 249 ~~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~ 327 (360)
+++| +||+|++.+++|+|+++++.++|++++++|+| ||+|+|.|.+.++.... . ....++.|+...+++.+
T Consensus 263 ~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~~g~~~ 334 (369)
T 3gwz_A 263 ETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVIDNLIDERPAA----S-TLFVDLLLLVLVGGAER 334 (369)
T ss_dssp TCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHHSCCCB
T ss_pred CCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCC----c-hhHhhHHHHhhcCCccC
Confidence 8777 79999999999999999999999999999999 99999999998776443 1 35677777766789999
Q ss_pred CHHHHHHHHHHCCCceeEEEe-eCCceeEEEEeC
Q 018116 328 TDEEWKTLFLDAGFTHYKITN-VFGLKSLIEVYP 360 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 360 (360)
+.++|.++|+++||+++++.+ ..+..++|+++|
T Consensus 335 t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 335 SESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp CHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred CHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 999999999999999999999 578899999986
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=369.46 Aligned_cols=317 Identities=25% Similarity=0.369 Sum_probs=277.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCccc
Q 018116 19 HGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEE 98 (360)
Q Consensus 19 ~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~ 98 (360)
...+++++.|++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.+.||||+|++.|++++.+ ++
T Consensus 6 ~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~---~~~~l~rlLr~l~~~gl~~~~~------~~ 74 (332)
T 3i53_A 6 AHIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGA---HADSLDRLLRHLVAVGLFTRDG------QG 74 (332)
T ss_dssp CSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEecC------CC
Confidence 4567899999999999999999999999985 79999999999999 5689999999999999999986 58
Q ss_pred ceecchhhhhhhcCCCCChhhhhhhhcCcccc-chhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhhC
Q 018116 99 AYGLTAISALLIKDKSYCLSPLVSGILDPENI-FPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISD 177 (360)
Q Consensus 99 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 177 (360)
.|++|+.++.|..+++.++.+++.+...+..+ ..|.+|+++++++. ++|+..+|.++|+++.++|+....|.++|...
T Consensus 75 ~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 153 (332)
T 3i53_A 75 VYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHH 153 (332)
T ss_dssp BEEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHH
T ss_pred eEEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHh
Confidence 99999999988877777788887765332334 78999999999987 67888899999999999999999999999887
Q ss_pred cchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCC
Q 018116 178 SEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQY 250 (360)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~~ 250 (360)
.....+.+++.++ +.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++ .+||+|+.+|++++
T Consensus 154 ~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 231 (332)
T 3i53_A 154 LELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDP 231 (332)
T ss_dssp HHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCC
Confidence 6655555666666 56678999999999999999999999999999999888887763 47899999999987
Q ss_pred CC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCH
Q 018116 251 IP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTD 329 (360)
Q Consensus 251 ~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~ 329 (360)
+| +||+|++++++|||+++++.++|++++++|+| ||+|+|.|.+.++. .. ...+++.|+...+++.++.
T Consensus 232 ~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~-~~------~~~~d~~~~~~~~~~~~t~ 301 (332)
T 3i53_A 232 LPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIEAVAGDE-HA------GTGMDLRMLTYFGGKERSL 301 (332)
T ss_dssp CCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEEECCCC----C------CHHHHHHHHHHHSCCCCCH
T ss_pred CCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEEeecCCCC-Cc------cHHHHHHHHhhCCCCCCCH
Confidence 77 79999999999999999999999999999999 99999999988765 21 1356777766678999999
Q ss_pred HHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 330 EEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
++|.++|+++||+++++.+.++ .++|++++
T Consensus 302 ~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 302 AELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 9999999999999999999988 99999975
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-48 Score=367.40 Aligned_cols=342 Identities=27% Similarity=0.502 Sum_probs=277.4
Q ss_pred hhhhcchHHHHH--HHHHHHHHHHHHHHHHHhCcchhhhhCCC-C---CCHHHHHHHcCC---CCCCcccHHHHHHHHHh
Q 018116 12 VRELFEGHGQVI--RLVFNHLSAMSLKGAVELGIADIIHSHGR-P---ITLSELVSALKI---QPTKTSNLFRFMRLLVH 82 (360)
Q Consensus 12 ~~~~~~~~~~~~--~~~~g~~~~~~L~~a~~l~lf~~L~~~~~-~---~t~~ela~~~~~---~p~~~~~l~~lL~~L~~ 82 (360)
.++.+++...++ +++.|++.+++|++++++|||+.|+.. + | .|++|||+++|+ +|.+++.+.||||+|++
T Consensus 16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~-g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~ 94 (372)
T 1fp1_D 16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKA-TPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLAS 94 (372)
T ss_dssp ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTC-SSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhc-CCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhh
Confidence 345668888899 999999999999999999999999863 3 6 999999999999 77667999999999999
Q ss_pred CCceecc----ccCCCCcccceecchhhhhhhcCCC-CChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChh
Q 018116 83 MGLFSKT----KVGGEKEEEAYGLTAISALLIKDKS-YCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYW 157 (360)
Q Consensus 83 ~g~l~~~----~~~~~~~~~~y~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~ 157 (360)
.|+|++. +++ ..+++|++|+.+..|..+++ .++++++.+..++.++..|.+|+++++++..+||+..+|.++|
T Consensus 95 ~gll~~~~~~~~~g--~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~ 172 (372)
T 1fp1_D 95 YSVLTSTTRTIEDG--GAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKY 172 (372)
T ss_dssp TTSEEEEEEECTTS--CEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC-------------
T ss_pred CCceEecccccCCC--CcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHH
Confidence 9999987 210 00258999999998888876 6788888876555667889999999998833789888899999
Q ss_pred HHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCC
Q 018116 158 DYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQT 237 (360)
Q Consensus 158 ~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 237 (360)
+++.++|+....|.+.|..........+++.++ .+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++.
T Consensus 173 ~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~ 251 (372)
T 1fp1_D 173 EFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL 251 (372)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC
T ss_pred HHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhc
Confidence 999999999999999998877666677777774 2567789999999999999999999999999999999999999877
Q ss_pred CCeEEEeCCCCCCCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh
Q 018116 238 ENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL 317 (360)
Q Consensus 238 ~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~ 317 (360)
++++++.+|+++++|.||+|++.+++|||+++++.++|++++++|+| ||+|+|.|...+.....+.........++.
T Consensus 252 ~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~ 328 (372)
T 1fp1_D 252 SGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNL 328 (372)
T ss_dssp TTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCccchHHHHHHHhhHH
Confidence 78999999998877789999999999999999999999999999999 999999999887654321011123456776
Q ss_pred hhcccCCcccCHHHHHHHHHHCCCceeEEEee-CCceeEEEEeC
Q 018116 318 MSVSVDGKERTDEEWKTLFLDAGFTHYKITNV-FGLKSLIEVYP 360 (360)
Q Consensus 318 ~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~ 360 (360)
|+...+++.++.++|.++|+++||+++++.+. ++..++|+++|
T Consensus 329 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 329 MFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HHhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 66545688999999999999999999999985 45259999987
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-48 Score=359.27 Aligned_cols=319 Identities=26% Similarity=0.406 Sum_probs=282.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCc
Q 018116 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKE 96 (360)
Q Consensus 17 ~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 96 (360)
.+...+++++.|++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.+.|||++|++.|++++.+
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~---~~~~l~r~Lr~L~~~g~l~~~~------ 75 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGS---DAERIHRLMRLLVAFEIFQGDT------ 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCceEecC------
Confidence 567889999999999999999999999999975 79999999999999 5799999999999999999985
Q ss_pred ccceecchhhhhhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhh
Q 018116 97 EEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMIS 176 (360)
Q Consensus 97 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 176 (360)
++.|++|+.++.|. +++.++.+++.+..++.. ..|.+|+++++++. ++|+..+|.++|+++.++|+....|.+.| .
T Consensus 76 ~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~ 151 (334)
T 2ip2_A 76 RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-K 151 (334)
T ss_dssp TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-G
T ss_pred CCeEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-H
Confidence 58999999999888 777788888877655444 88999999999987 78988899999999999999999999999 7
Q ss_pred CcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC
Q 018116 177 DSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ 249 (360)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~ 249 (360)
......+.+++.++ +.+ .+|||||||+|.++..+++++|+.+++++|++.+++.+++ .++++++.+|+++
T Consensus 152 ~~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 228 (334)
T 2ip2_A 152 ASNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ 228 (334)
T ss_dssp GGHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT
T ss_pred HHHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC
Confidence 77666677888777 566 9999999999999999999999999999999877777653 4789999999988
Q ss_pred CCC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccC
Q 018116 250 YIP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERT 328 (360)
Q Consensus 250 ~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t 328 (360)
++| +||+|++.+++|+|+++++.++|++++++|+| ||+++|.|...++.... .....+++.|+...+|+.++
T Consensus 229 ~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~~~~t 301 (334)
T 2ip2_A 229 EVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAG---DGRVVVIERTISASEPS----PMSVLWDVHLFMACAGRHRT 301 (334)
T ss_dssp CCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSSCC----HHHHHHHHHHHHHHSCCCCB
T ss_pred CCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhHHhhhHhHhhCCCcCCC
Confidence 766 59999999999999999999999999999999 99999999988765432 23356677776656788999
Q ss_pred HHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 329 DEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
.++|.++++++||+++++.+.++..++|+++|
T Consensus 302 ~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 302 TEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999999999999999999988899999986
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=346.31 Aligned_cols=327 Identities=16% Similarity=0.202 Sum_probs=266.1
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecccc
Q 018116 12 VRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKV 91 (360)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~ 91 (360)
+.+++++..++++++.|++.+++|++++++|||+.|+.+++|+|++|||+++|+ +++.++||||+|++.|+|+++
T Consensus 9 ~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~---~~~~l~rlLr~l~~~g~l~~~-- 83 (363)
T 3dp7_A 9 QCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL---TRYAAQVLLEASLTIGTILLE-- 83 (363)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEE--
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCeEec--
Confidence 346778999999999999999999999999999999874479999999999999 579999999999999999886
Q ss_pred CCCCcccceecchhhhhhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhC--CChhHHhhcCCcHHHH
Q 018116 92 GGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHG--KNYWDYMNQNPGLSQR 169 (360)
Q Consensus 92 ~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g--~~~~~~~~~~~~~~~~ 169 (360)
+++|++|+.+.+|..+++.+ .++.+. .+..++.|.+|++++|+|. .++...+| .++|+++.++|+....
T Consensus 84 -----~~~y~~t~~s~~L~~~~~~~--~~~~~~-~~~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 154 (363)
T 3dp7_A 84 -----EDRYVLAKAGWFLLNDKMAR--VNMEFN-HDVNYQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLPEQVQK 154 (363)
T ss_dssp -----TTEEEECHHHHHHHHCHHHH--HHHHHH-HHTTHHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSCHHHHH
T ss_pred -----CCEEecccchHHhhCCCccc--chheee-cHHhhhhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCHHHHHH
Confidence 48999999999988776422 233332 2356789999999999987 56667777 6899999999987663
Q ss_pred ----HHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CC
Q 018116 170 ----FNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TE 238 (360)
Q Consensus 170 ----~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ 238 (360)
|...|.... ...++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+
T Consensus 155 ~~~~f~~~~~~~~---~~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~ 229 (363)
T 3dp7_A 155 SWFGFDHFYSDQS---FGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSE 229 (363)
T ss_dssp HHHHHHHHTTCCC---CHHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGG
T ss_pred HHHHHHHHhhhhh---HHHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCccc
Confidence 556665433 223444444 35778999999999999999999999999999999888887663 36
Q ss_pred CeEEEeCCCCCC---CC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchh-hhhHhHh
Q 018116 239 NLKYIAGDMFQY---IP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQ-VTEAKLL 313 (360)
Q Consensus 239 ri~~~~~D~~~~---~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~-~~~~~~~ 313 (360)
||+++.+|++++ +| +||+|++.+++|+|+++++.++|++++++|+| ||+|+|.|.+.+....... +......
T Consensus 230 ~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~ 306 (363)
T 3dp7_A 230 RIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK---DSKVYIMETLWDRQRYETASYCLTQIS 306 (363)
T ss_dssp GEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT---TCEEEEEECCTTSCSSHHHHHHHHHHH
T ss_pred ceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEeeccCCccccchhhHHHHhh
Confidence 899999999984 66 69999999999999999999999999999999 9999999998877544321 0011122
Q ss_pred hhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeCC-ceeEEEEeC
Q 018116 314 GDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFG-LKSLIEVYP 360 (360)
Q Consensus 314 ~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~~ 360 (360)
.++.++...+++.++.++|.++|+++||+++++.+..+ ..++|+++|
T Consensus 307 ~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 307 LYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred hhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 33334444567889999999999999999999997754 588999875
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=344.72 Aligned_cols=324 Identities=21% Similarity=0.331 Sum_probs=276.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCC
Q 018116 16 FEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEK 95 (360)
Q Consensus 16 ~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~ 95 (360)
.+...++++++.|++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.+.||||+|++.|++++.+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~---~~~~l~r~Lr~L~~~Gll~~~~----- 83 (374)
T 1qzz_A 14 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGE----- 83 (374)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCC-----
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCEEEeC-----
Confidence 3456789999999999999999999999999964 79999999999999 5799999999999999999865
Q ss_pred ccc--ceecchhhhhhhcCCCCChhhhhhhhcCcccc-chhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHH
Q 018116 96 EEE--AYGLTAISALLIKDKSYCLSPLVSGILDPENI-FPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQ 172 (360)
Q Consensus 96 ~~~--~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 172 (360)
++ .|++|+.+..|..+++.++.+++.+...+..+ ..|.+|.+.+++|. +++...+|.++|+++..+++....|.+
T Consensus 84 -~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~ 161 (374)
T 1qzz_A 84 -KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDA 161 (374)
T ss_dssp -C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHH
T ss_pred -CCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHHHHHHH
Confidence 46 89999999999888877888887765433345 78899999999987 678888899999999999999999999
Q ss_pred HhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeC
Q 018116 173 AMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAG 245 (360)
Q Consensus 173 ~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~ 245 (360)
.|..........+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .++++++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 239 (374)
T 1qzz_A 162 LMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEG 239 (374)
T ss_dssp TCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 998877666677888777 67789999999999999999999999999999999888877653 358999999
Q ss_pred CCCCCCC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee--ecCCCCcchhhhhHhHhhhhhhhccc
Q 018116 246 DMFQYIP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI--VINEKEDKHQVTEAKLLGDTLMSVSV 322 (360)
Q Consensus 246 D~~~~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~--~~~~~~~~~~~~~~~~~~d~~~~~~~ 322 (360)
|+++++| +||+|++.+++|||+++++.++|++++++|+| ||+++|.|. +.++.... .....+++.++...
T Consensus 240 d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~~ 312 (374)
T 1qzz_A 240 DFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGADR----FFSTLLDLRMLTFM 312 (374)
T ss_dssp CTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-------H----HHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEechhhcCCCCCc----chhhhcchHHHHhC
Confidence 9988666 49999999999999999989999999999999 999999998 76543221 22345666666556
Q ss_pred CCcccCHHHHHHHHHHCCCceeEEEeeCCce-----eEEEEeC
Q 018116 323 DGKERTDEEWKTLFLDAGFTHYKITNVFGLK-----SLIEVYP 360 (360)
Q Consensus 323 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~~ 360 (360)
+++.++.++|.++|+++||+++++.+.++.. ++|+++|
T Consensus 313 ~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 313 GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 7889999999999999999999999998777 8998874
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=339.26 Aligned_cols=322 Identities=23% Similarity=0.386 Sum_probs=278.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcc
Q 018116 18 GHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEE 97 (360)
Q Consensus 18 ~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~ 97 (360)
...++++++.|++.+++|++++++|||+.|.. ++.|++|||+++|+ +++.+.|+|++|++.|++++.+ +
T Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~~~~~~------~ 87 (360)
T 1tw3_A 19 DALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA------P 87 (360)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE------T
T ss_pred chHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEecC------C
Confidence 35778999999999999999999999999975 79999999999999 5799999999999999999965 5
Q ss_pred cceecchhhhhhhcCCCCChhhhhhhhcCcc-ccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhh
Q 018116 98 EAYGLTAISALLIKDKSYCLSPLVSGILDPE-NIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMIS 176 (360)
Q Consensus 98 ~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 176 (360)
++|++|+.+..|..+++.++..++.+...+. .+..|..|.+.+++|. ++++..+|.++|+++..+|+....|...|..
T Consensus 88 g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~ 166 (360)
T 1tw3_A 88 GEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLAC 166 (360)
T ss_dssp TEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTT
T ss_pred CeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHH
Confidence 8999999999999888778888876654332 4678899999999987 5788888999999999999999999999988
Q ss_pred CcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC
Q 018116 177 DSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ 249 (360)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~ 249 (360)
......+.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .++++++.+|+++
T Consensus 167 ~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 244 (360)
T 1tw3_A 167 DQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE 244 (360)
T ss_dssp TTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 77777777888887 67789999999999999999999999999999999777776653 3589999999988
Q ss_pred CCC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee-cCCCCcchhhhhHhHhhhhhhhcccCCccc
Q 018116 250 YIP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV-INEKEDKHQVTEAKLLGDTLMSVSVDGKER 327 (360)
Q Consensus 250 ~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~-~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~ 327 (360)
++| +||+|++.+++|+|+++++.++|++++++|+| ||++++.|.. .++.... .....+++.|+...+++.+
T Consensus 245 ~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 317 (360)
T 1tw3_A 245 PLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHENSFN----EQFTELDLRMLVFLGGALR 317 (360)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHHSCCCC
T ss_pred CCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEEEeccCCCCCc----chhhhccHHHhhhcCCcCC
Confidence 666 49999999999999999989999999999999 9999999988 5543222 1234566666655578899
Q ss_pred CHHHHHHHHHHCCCceeEEEeeCCc-----eeEEEEeC
Q 018116 328 TDEEWKTLFLDAGFTHYKITNVFGL-----KSLIEVYP 360 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~-----~~vi~~~~ 360 (360)
+.++|.++|+++||+++++.+.++. .++|+++|
T Consensus 318 t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 318 TREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp BHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 9999999999999999999988765 78999875
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=327.31 Aligned_cols=316 Identities=17% Similarity=0.228 Sum_probs=270.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCccc
Q 018116 19 HGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEE 98 (360)
Q Consensus 19 ~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~ 98 (360)
..++++++.|++.+++|++++++|||+.|+. +|.|++|||+++|+ +++.+.|||++|++.|++++. ++
T Consensus 7 ~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~l~~~-------~~ 74 (335)
T 2r3s_A 7 PALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQT---SERGMRMLCDYLVIIGFMTKQ-------AE 74 (335)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCC---CchHHHHHHHHHHhcCCeEec-------CC
Confidence 3678999999999999999999999999986 79999999999999 579999999999999999885 58
Q ss_pred ceecchhh-hhhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhhC
Q 018116 99 AYGLTAIS-ALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISD 177 (360)
Q Consensus 99 ~y~~t~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 177 (360)
+|++|+.+ ..|..+++.++.+++.+..++..+..|.+|+++++++. ++++ + |+++.++++....|.+.|...
T Consensus 75 ~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~~~~ 147 (335)
T 2r3s_A 75 GYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGG-TAIS-----S-EGTLSPEHPVWVQFAKAMSPM 147 (335)
T ss_dssp EEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTS-CCST-----T-TGGGSTTCTHHHHHHHHSGGG
T ss_pred EEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCC-CCCC-----C-cccccCCHHHHHHHHHHHHHH
Confidence 99999999 58888877788888887655456788999999999987 3433 3 888889999999999999887
Q ss_pred cchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-
Q 018116 178 SEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ- 249 (360)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~- 249 (360)
.......+++.+++.+.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++++++.+|+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 227 (335)
T 2r3s_A 148 MANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV 227 (335)
T ss_dssp GHHHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS
T ss_pred HhhhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC
Confidence 76666777888872117789999999999999999999999999999999888777664 3579999999987
Q ss_pred CCC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhccc-CCccc
Q 018116 250 YIP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV-DGKER 327 (360)
Q Consensus 250 ~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~~~ 327 (360)
+.+ +||+|++.+++|+|+++++.++|++++++|+| ||++++.|...++....+ .....+++.|+... +++.+
T Consensus 228 ~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 301 (335)
T 2r3s_A 228 DYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAV---EGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAY 301 (335)
T ss_dssp CCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCC
T ss_pred CCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCC---CcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcC
Confidence 555 49999999999999999999999999999999 999999999887654322 23355667666554 78899
Q ss_pred CHHHHHHHHHHCCCceeEEEeeCCceeEEEEe
Q 018116 328 TDEEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
+.++|.++++++||+.+++.+.++..++++++
T Consensus 302 t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 302 TFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred CHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 99999999999999999999998877877664
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=328.00 Aligned_cols=319 Identities=15% Similarity=0.205 Sum_probs=264.1
Q ss_pred CchhhhcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 10 ISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
..+...++.+.++++++.|++.+++|++++++|||++|. +|.|++|||+++|+ +++.+.||||+|++.|++++.
T Consensus 16 ~~~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~---~~~~l~rlLr~L~~~gll~~~ 89 (352)
T 3mcz_A 16 TEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGM---VEGKAAILLHALAALGLLTKE 89 (352)
T ss_dssp CCSCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCc---ChHHHHHHHHHHHHCCCeEec
Confidence 455566677777999999999999999999999999996 49999999999999 568999999999999999998
Q ss_pred ccCCCCcccceecchhhh-hhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHH
Q 018116 90 KVGGEKEEEAYGLTAISA-LLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQ 168 (360)
Q Consensus 90 ~~~~~~~~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~ 168 (360)
+ ++|++|+.+. ++.++++.+++.++.+.. ..+..|.+|++++++|.+.+|+.. .++..+++...
T Consensus 90 ~-------~~y~~t~~s~~~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~ 154 (352)
T 3mcz_A 90 G-------DAFRNTALTERYLTTTSADYIGPIVEHQY--LQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARD 154 (352)
T ss_dssp T-------TEEEECHHHHHHHSTTCTTCCHHHHHHHH--TTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHH
T ss_pred C-------CeeecCHHHHhhccCCChhhHHHHHHHhH--HHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHH
Confidence 4 7899999998 666777778887776542 357889999999999875544321 23456788888
Q ss_pred HHHHHhhhCcchhHHHHHHHhhhhcCC-CCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCe
Q 018116 169 RFNQAMISDSEMAIFIVKDCCRKIFEG-LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENL 240 (360)
Q Consensus 169 ~~~~~m~~~~~~~~~~~~~~~~~~~~~-~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri 240 (360)
.|.++|...... ...+++.++ +.+ ..+|||||||+|.++..+++++|+.+++++|++.+++.+++ .+|+
T Consensus 155 ~f~~~m~~~~~~-~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 231 (352)
T 3mcz_A 155 AFNDAMVRLSQP-MVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRV 231 (352)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGE
T ss_pred HHHHHHHhhhhh-HHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCce
Confidence 999998873222 236777777 555 89999999999999999999999999999999888776653 4689
Q ss_pred EEEeCCCCCC---CC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhh
Q 018116 241 KYIAGDMFQY---IP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDT 316 (360)
Q Consensus 241 ~~~~~D~~~~---~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~ 316 (360)
+++.+|++++ .+ +||+|++.+++|||+++++.++|++++++|+| ||+|+|.|.+.++....+ .....+++
T Consensus 232 ~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~ 305 (352)
T 3mcz_A 232 EFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKP---GGALLILTMTMNDDRVTP---ALSADFSL 305 (352)
T ss_dssp EEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEEECCCTTSSSS---HHHHHHHH
T ss_pred EEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCC---chHHHhhH
Confidence 9999999984 45 49999999999999999999999999999999 999999999988765432 23456777
Q ss_pred hhhccc-CCcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 317 LMSVSV-DGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 317 ~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
.|+... +++.++.++|.++|+++||++++.. .+...+++++|
T Consensus 306 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 306 HMMVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred HHHhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 776544 7889999999999999999998843 45677887765
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-43 Score=328.61 Aligned_cols=315 Identities=19% Similarity=0.310 Sum_probs=266.9
Q ss_pred CchhhhcchHHHHHHHHH-HHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceec
Q 018116 10 ISVRELFEGHGQVIRLVF-NHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSK 88 (360)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~ 88 (360)
+...++.++..++++++. |++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.+.||||+|++.|+|++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~ 96 (359)
T 1x19_A 22 MSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINL 96 (359)
T ss_dssp ECCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE
T ss_pred CCccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCc---ChHHHHHHHHHHHhCCCeEe
Confidence 345567788889999986 8999999999999999999986 79999999999999 57999999999999999999
Q ss_pred cccCCCCcccceecchh-hhhhhcCCC---CChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCC
Q 018116 89 TKVGGEKEEEAYGLTAI-SALLIKDKS---YCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNP 164 (360)
Q Consensus 89 ~~~~~~~~~~~y~~t~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~ 164 (360)
.+ ++|++|+. +.+|.++++ .++++++.+. .+..++.|.+|+++++++.+ |+++.++|
T Consensus 97 ~~-------~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~-----------~~~~~~~p 157 (359)
T 1x19_A 97 ED-------GKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN-----------FKGQVPYP 157 (359)
T ss_dssp ET-------TEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC-----------CCCSSCSS
T ss_pred eC-------CeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC-----------CcccccCc
Confidence 74 79999996 458888776 6788877664 23467889999999998752 67777888
Q ss_pred c---HHHHHHHHhhhCcc-hhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC----
Q 018116 165 G---LSQRFNQAMISDSE-MAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ---- 236 (360)
Q Consensus 165 ~---~~~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---- 236 (360)
+ ....|.+.|..... .....+++.++ +.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++
T Consensus 158 ~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~ 235 (359)
T 1x19_A 158 PVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAE 235 (359)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHh
Confidence 8 89999999998887 66777888887 67889999999999999999999999999999999888877653
Q ss_pred ---CCCeEEEeCCCCC-CCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhH
Q 018116 237 ---TENLKYIAGDMFQ-YIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKL 312 (360)
Q Consensus 237 ---~~ri~~~~~D~~~-~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~ 312 (360)
.+|++++.+|+++ +.+++|+|++.+++|+|+++++.++|++++++|+| ||+++|.|...++.... ....
T Consensus 236 ~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~----~~~~ 308 (359)
T 1x19_A 236 KGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENP----NFDY 308 (359)
T ss_dssp TTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEECCCCTTSC----CHHH
T ss_pred cCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCC---CCEEEEEecccCCCCCc----hHHH
Confidence 4679999999988 56678999999999999999999999999999999 99999999988765221 1112
Q ss_pred hhhhhhhc-ccCCcc----cCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 313 LGDTLMSV-SVDGKE----RTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 313 ~~d~~~~~-~~~g~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
.+ .++. ..+++. ++.++|.++|+++||+++++.+.+ ..++++++|
T Consensus 309 ~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 309 LS--HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp HH--HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HH--HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 22 2322 234666 899999999999999999999988 788999876
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-21 Score=171.45 Aligned_cols=164 Identities=13% Similarity=0.119 Sum_probs=123.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIPPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~~~ 261 (360)
.+++.+|||||||+|.++..+++++ |+++++++|+ +.|++.|++ ..+|+++++|+.+ +.++||+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4678999999999999999999986 6889999999 999988763 4689999999987 677899999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc---c-----------cCCccc
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV---S-----------VDGKER 327 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~---~-----------~~g~~~ 327 (360)
++||+++++..++|++++++|+| ||+|++.|............ ......++.... . .--...
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCCHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 99999998888999999999999 99999999887664332100 000111110000 0 001235
Q ss_pred CHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 328 TDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
+.+++.++|+++||+.++++.-...+..++|+|
T Consensus 224 s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 889999999999999998865544444444544
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=157.40 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=126.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC-CccEEEeccccccC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP-PADAYFFKLVFHAF 266 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~~ 266 (360)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++||+
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL 122 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGS
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccC
Confidence 4668999999999999999999999999999999 888877653 3489999999987 443 69999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh-----------h--hcccCCcccCHHHHH
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL-----------M--SVSVDGKERTDEEWK 333 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~-----------~--~~~~~g~~~t~~e~~ 333 (360)
++++..++|++++++|+| ||++++.+...+......... ...+.... . ........++.+++.
T Consensus 123 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (234)
T 3dtn_A 123 EDEDKKELYKRSYSILKE---SGIFINADLVHGETAFIENLN-KTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQL 198 (234)
T ss_dssp CHHHHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHHH-HHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHH
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCChhhhhHH-HHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHH
Confidence 998888899999999999 999999998876543221000 00000000 0 000123456889999
Q ss_pred HHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 334 TLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
++|+++||+.+++......++++..+|
T Consensus 199 ~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 199 NWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp HHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred HHHHHcCCCceeeeeeecceeEEEEEe
Confidence 999999999999988887777776553
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=148.40 Aligned_cols=169 Identities=14% Similarity=0.198 Sum_probs=122.2
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCC-CccEEE
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-YIP-PADAYF 258 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~~p-~~D~i~ 258 (360)
.+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|+
T Consensus 36 ~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~ 111 (220)
T 3hnr_A 36 DILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIV 111 (220)
T ss_dssp HHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEE
T ss_pred HHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEE
Confidence 4555555 457889999999999999999987 679999999 888887764 2589999999987 443 699999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh--hhcccCCcccCHHHHHHHH
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL--MSVSVDGKERTDEEWKTLF 336 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~--~~~~~~g~~~t~~e~~~ll 336 (360)
+..++||+++++...+|++++++|+| ||.+++.+...................... .........++.++|.++|
T Consensus 112 ~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 188 (220)
T 3hnr_A 112 STYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIF 188 (220)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHH
T ss_pred ECcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHH
Confidence 99999999998877899999999999 999999987665432111000000000000 0000011344889999999
Q ss_pred HHCCCceeEEEeeCCceeEEEEeC
Q 018116 337 LDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 337 ~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
+++||+++.+. ...+.+++.+.|
T Consensus 189 ~~aGf~v~~~~-~~~~~w~~~~~~ 211 (220)
T 3hnr_A 189 ENNGFHVTFTR-LNHFVWVMEATK 211 (220)
T ss_dssp HHTTEEEEEEE-CSSSEEEEEEEE
T ss_pred HHCCCEEEEee-ccceEEEEeehh
Confidence 99999766554 446777776653
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=144.92 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=125.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p- 252 (360)
..++..++ ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ ..++++..+|+.+ +.+
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 44555565 6678899999999999999999997 7889999999 888887764 2589999999977 444
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHH
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEE 331 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e 331 (360)
.||+|++..++||+++. ..+|++++++|+| ||.+++.+.......... .....++.++
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~ 163 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAIIDWKKEERDKGP----------------PPEEVYSEWE 163 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSC----------------CGGGSCCHHH
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEEEecccccccCC----------------chhcccCHHH
Confidence 59999999999999764 5789999999999 999999887665532211 0012458999
Q ss_pred HHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 332 WKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
|.++++++||+++++.........+.++|
T Consensus 164 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 164 VGLILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999999999887777776654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-18 Score=148.57 Aligned_cols=167 Identities=14% Similarity=0.126 Sum_probs=120.4
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p- 252 (360)
..+++.++ ..+. +|||||||+|.++..+++. ++.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 34 ~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 34 ENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 33444444 3334 9999999999999999998 8889999999 888887764 3589999999987 554
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhH-h-HhhhhhhhcccCCcccCH
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEA-K-LLGDTLMSVSVDGKERTD 329 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~-~-~~~d~~~~~~~~g~~~t~ 329 (360)
.||+|++..++||+++. .++|++++++|+| ||++++.+...+...... .... . ....+..........++.
T Consensus 110 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDV--ATAFREIYRILKS---GGKTYIGGGFGNKELRDS-ISAEMIRKNPDWKEFNRKNISQENV 183 (219)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEECCSSHHHHHH-HHHHHHHHCTTHHHHHHHHSSHHHH
T ss_pred ccccEEEECchHhhccCH--HHHHHHHHHhCCC---CCEEEEEeccCcHHHHHH-HHHHHHHhHHHHHhhhhhccccCCH
Confidence 59999999999999664 5789999999999 999999875544311110 0000 0 000000000011234578
Q ss_pred HHHHHHHHHCCCceeEEEeeCCceeEEEEe
Q 018116 330 EEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
++|.++|+++||+.+++.......+++..+
T Consensus 184 ~~~~~~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 184 ERFQNVLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred HHHHHHHHHcCCCeEEEEecCCceEEEEec
Confidence 999999999999999999887777766544
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=149.96 Aligned_cols=160 Identities=17% Similarity=0.172 Sum_probs=117.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CccEEEeccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP--PADAYFFKLVFH 264 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh 264 (360)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 3478999999999999999999876 9999999 888887764 3789999999987 444 599999999988
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc---cC------------------
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS---VD------------------ 323 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~---~~------------------ 323 (360)
++..++..++|++++++|+| ||++++.+...+...... ...........+... ..
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVR 190 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEE---EEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC-----CCEEE
T ss_pred hCCHHHHHHHHHHHHHHcCC---CcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEeccchhhheee
Confidence 87877788999999999999 999999877533211100 000000000000000 00
Q ss_pred CcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 324 GKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 324 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
....+ .+|.++|+++||+.+++..+....++|+.+|
T Consensus 191 ~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 191 FNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp EECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 01112 4899999999999999999988888999886
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-17 Score=140.90 Aligned_cols=158 Identities=18% Similarity=0.229 Sum_probs=113.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCCCCC--CccEEE
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQYIP--PADAYF 258 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~~~p--~~D~i~ 258 (360)
.++..+. ...+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|+
T Consensus 36 ~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 36 AALERLR-AGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 3444443 1445679999999999999999998 679999999 888888775 3789999999987533 599999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccC-------CcccCHHH
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVD-------GKERTDEE 331 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-------g~~~t~~e 331 (360)
+.+++||+++++...+|++++++|+| ||.+++.+...+...... ... ............. ....+.++
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAP---GGVVEFVDVTDHERRLEQ-QDD-SEPEVAVRRTLQDGRSFRIVKVFRSPAE 187 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCC---CeEEEEEeCCCCccccch-hhh-cccccceeeecCCcchhhHhhcCCCHHH
Confidence 99999999998888999999999999 999999988764322110 000 0000000000011 12459999
Q ss_pred HHHHHHHCCCceeEEEee
Q 018116 332 WKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~~ 349 (360)
|.++++++||++......
T Consensus 188 ~~~~l~~aGf~v~~~~~~ 205 (218)
T 3ou2_A 188 LTERLTALGWSCSVDEVH 205 (218)
T ss_dssp HHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHCCCEEEeeecc
Confidence 999999999995444433
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=148.35 Aligned_cols=153 Identities=20% Similarity=0.305 Sum_probs=120.2
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--Ccc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~D 255 (360)
.+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||
T Consensus 46 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 46 KILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence 3344444 5677899999999999999999987 789999999 888877654 2789999999987 554 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTL 335 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~l 335 (360)
+|++..++||+++++...+|++++++|+| ||++++.+...+...... . ....... ..+...++.++|.++
T Consensus 123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~--~~~~~~~--~~~~~~~~~~~~~~~ 192 (266)
T 3ujc_A 123 LIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATEKENWD---D--EFKEYVK--QRKYTLITVEEYADI 192 (266)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESCGGGCC---H--HHHHHHH--HHTCCCCCHHHHHHH
T ss_pred EEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCCcccch---H--HHHHHHh--cCCCCCCCHHHHHHH
Confidence 99999999999888889999999999999 999999998776522111 0 1111110 112346699999999
Q ss_pred HHHCCCceeEEEee
Q 018116 336 FLDAGFTHYKITNV 349 (360)
Q Consensus 336 l~~aGf~~~~~~~~ 349 (360)
++++||+++++...
T Consensus 193 l~~~Gf~~~~~~~~ 206 (266)
T 3ujc_A 193 LTACNFKNVVSKDL 206 (266)
T ss_dssp HHHTTCEEEEEEEC
T ss_pred HHHcCCeEEEEEeC
Confidence 99999999988765
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=147.27 Aligned_cols=155 Identities=15% Similarity=0.126 Sum_probs=120.1
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p- 252 (360)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 44555555 5678899999999999999999987 689999999 888877653 4589999999987 554
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHH
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEE 331 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e 331 (360)
.||+|++..++||+++. .++|++++++|+| ||++++.+.......... . ....+........+..++.++
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~ 198 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIADFVLLAPVEGA---K-KEAVDAFRAGGGVLSLGGIDE 198 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEEEEEESSCCCHH---H-HHHHHHHHHHHTCCCCCCHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEEEeeccCCCChh---H-HHHHHHHHhhcCccCCCCHHH
Confidence 59999999999999875 5789999999999 999999998776533221 0 011111111112356779999
Q ss_pred HHHHHHHCCCceeEEEee
Q 018116 332 WKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~~ 349 (360)
|.++++++||+++++..+
T Consensus 199 ~~~~l~~aGf~~~~~~~~ 216 (273)
T 3bus_A 199 YESDVRQAELVVTSTVDI 216 (273)
T ss_dssp HHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHcCCeEEEEEEC
Confidence 999999999999988766
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=147.19 Aligned_cols=163 Identities=16% Similarity=0.100 Sum_probs=117.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-CccEEEecc-ccccCC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP-PADAYFFKL-VFHAFG 267 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p-~~D~i~~~~-~lh~~~ 267 (360)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++||++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 345689999999999999999988 458999999 999988775 5689999999987 444 599999998 999997
Q ss_pred h-hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhh--------------------hHhHhhhhhhhccc-C--
Q 018116 268 D-EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVT--------------------EAKLLGDTLMSVSV-D-- 323 (360)
Q Consensus 268 ~-~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~--------------------~~~~~~d~~~~~~~-~-- 323 (360)
+ ++..++|++++++|+| ||.+++.+...+......... ......++.+.... +
T Consensus 126 ~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLP---DGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRG 202 (263)
T ss_dssp HHHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCc
Confidence 5 5677899999999999 888888654333321100000 00000011111000 1
Q ss_pred ---------CcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 324 ---------GKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 324 ---------g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
.+.++.++|.++|+++||+++++...++...+++++|
T Consensus 203 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 203 ITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2345899999999999999999987777666776654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-17 Score=145.59 Aligned_cols=153 Identities=14% Similarity=0.262 Sum_probs=116.9
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP- 252 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p- 252 (360)
...+++.++ ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 26 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 26 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 345566665 56788999999999999999999865 9999999 889887764 2579999999977 554
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhh-hhhc-ccCCcccCH
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDT-LMSV-SVDGKERTD 329 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~-~~~g~~~t~ 329 (360)
.||+|++..++||+++. ..+|++++++|+| ||++++.+...+..... . .+... .... ......++.
T Consensus 102 ~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~ 170 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK---GGQLLLVDNSAPENDAF---D---VFYNYVEKERDYSHHRAWKK 170 (260)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEBCSSHHH---H---HHHHHHHHHHCTTCCCCCBH
T ss_pred CCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCC---CCEEEEEEcCCCCCHHH---H---HHHHHHHHhcCccccCCCCH
Confidence 59999999999999876 4789999999999 99999998876553211 1 11111 1111 112355789
Q ss_pred HHHHHHHHHCCCceeEEEee
Q 018116 330 EEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~ 349 (360)
++|.++|+++||+++.+...
T Consensus 171 ~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 171 SDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEEe
Confidence 99999999999998877655
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=147.00 Aligned_cols=154 Identities=17% Similarity=0.270 Sum_probs=118.1
Q ss_pred HHHHHHhhh--hcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC
Q 018116 183 FIVKDCCRK--IFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YI 251 (360)
Q Consensus 183 ~~~~~~~~~--~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~ 251 (360)
..+++.++| .+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ ++
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 146 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 146 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC
Confidence 344555510 15678899999999999999999986 569999999 888887753 3689999999987 55
Q ss_pred C--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCH
Q 018116 252 P--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTD 329 (360)
Q Consensus 252 p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~ 329 (360)
+ .||+|++..++||+++ ..++|++++++|+| ||++++.+.......... .....+.... .....+.
T Consensus 147 ~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~~~ 214 (297)
T 2o57_A 147 EDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRIK----LHDMGSL 214 (297)
T ss_dssp CTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHHT----CSSCCCH
T ss_pred CCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCC---CeEEEEEEeccCCCCchH---HHHHHHHHhc----CCCCCCH
Confidence 4 5999999999999988 46889999999999 999999998776543321 0111111111 1234589
Q ss_pred HHHHHHHHHCCCceeEEEee
Q 018116 330 EEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~ 349 (360)
++|.++++++||+++++..+
T Consensus 215 ~~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 215 GLYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp HHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHCCCeEEEEEEC
Confidence 99999999999999988765
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.4e-17 Score=145.89 Aligned_cols=160 Identities=15% Similarity=0.165 Sum_probs=119.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCcc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~D 255 (360)
.+++.++ ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ .++++++.+|+.+....||
T Consensus 55 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD 131 (287)
T 1kpg_A 55 LALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVD 131 (287)
T ss_dssp HHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCS
T ss_pred HHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCee
Confidence 3445455 56778999999999999999997764 59999999 888887653 3689999999865225699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch----hh-hhHhHhhhhh-hhcccCCcccCH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH----QV-TEAKLLGDTL-MSVSVDGKERTD 329 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~----~~-~~~~~~~d~~-~~~~~~g~~~t~ 329 (360)
+|++..++||+++++..++|++++++|+| ||++++.+...+...... +. .......++. .....++..++.
T Consensus 132 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 208 (287)
T 1kpg_A 132 RIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSI 208 (287)
T ss_dssp EEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred EEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCH
Confidence 99999999999877778999999999999 999999998775422100 00 0000111111 111234567799
Q ss_pred HHHHHHHHHCCCceeEEEee
Q 018116 330 EEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~ 349 (360)
++|.++++++||+++++...
T Consensus 209 ~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 209 PMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHhCCcEEEEEEeC
Confidence 99999999999999988765
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=146.81 Aligned_cols=148 Identities=19% Similarity=0.230 Sum_probs=116.0
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--Ccc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~D 255 (360)
.++..++ ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.. +.+ .||
T Consensus 84 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 84 NFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 3444444 4567899999999999999999886 567999999 888887764 2689999999876 444 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTL 335 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~l 335 (360)
+|++.+++||+++++..++|++++++|+| ||++++.+......... .+. ......++.++|.++
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~ 224 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRFL---------VDK----EDSSLTRSDIHYKRL 224 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCEE---------EET----TTTEEEBCHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcccce---------ecc----cCCcccCCHHHHHHH
Confidence 99999999999988889999999999999 99999988754332111 000 012235699999999
Q ss_pred HHHCCCceeEEEeeC
Q 018116 336 FLDAGFTHYKITNVF 350 (360)
Q Consensus 336 l~~aGf~~~~~~~~~ 350 (360)
|+++||+++++....
T Consensus 225 l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 225 FNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHTCCEEEEEECT
T ss_pred HHHCCCEEEEeeecC
Confidence 999999999987663
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=139.52 Aligned_cols=141 Identities=18% Similarity=0.263 Sum_probs=111.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCC--CccEEEeccccccC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ---YIP--PADAYFFKLVFHAF 266 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~---~~p--~~D~i~~~~~lh~~ 266 (360)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++ .||+|++..++||+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 456789999999999999999988 668999999 8999888644 9999999866 444 59999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEE
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKI 346 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
++++...+|++++++|+| ||++++....... . .. ..+.. .........+.+++.++++++||+++++
T Consensus 115 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~---~---~~---~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 115 DPERLFELLSLCYSKMKY---SSYIVIESPNPTS---L---YS---LINFY-IDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp CGGGHHHHHHHHHHHBCT---TCCEEEEEECTTS---H---HH---HHHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCC---CcEEEEEeCCcch---h---HH---HHHHh-cCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 988888999999999999 9999987654221 1 01 11111 1112235568999999999999999888
Q ss_pred EeeC
Q 018116 347 TNVF 350 (360)
Q Consensus 347 ~~~~ 350 (360)
....
T Consensus 182 ~~~~ 185 (240)
T 3dli_A 182 EFFE 185 (240)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7663
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-17 Score=142.71 Aligned_cols=152 Identities=17% Similarity=0.139 Sum_probs=116.4
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p- 252 (360)
..++..+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +.+
T Consensus 26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 34445555 5678899999999999999999987 679999999 888887753 3689999999977 333
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
.||+|++..++||+++. .++|++++++|+| ||++++.+.......... . ..... ........++.++|
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~-~~~~~~~~~~~~~~ 170 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---E---IAQAC-GVSSTSDFLTLPGL 170 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---H---HHHTT-TCSCGGGSCCHHHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCC---CeEEEEecCcccCCCChH---H---HHHHH-hcccccccCCHHHH
Confidence 59999999999999864 5789999999999 999999998765543321 0 10100 00111245689999
Q ss_pred HHHHHHCCCceeEEEee
Q 018116 333 KTLFLDAGFTHYKITNV 349 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~ 349 (360)
.++++++||+++++...
T Consensus 171 ~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 171 VGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHCCCeeEEEEeC
Confidence 99999999998887543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-17 Score=139.24 Aligned_cols=138 Identities=17% Similarity=0.109 Sum_probs=112.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CccEEEeccccccCChhH
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDED 270 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~ 270 (360)
..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.+++||++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 789999999999999999987 669999999 899988875 6789999999977 443 599999999999999777
Q ss_pred HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeC
Q 018116 271 CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVF 350 (360)
Q Consensus 271 ~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
..++|++++++|+| ||.+++.+...+..... .. .......++.++|.++|+++||+++++...+
T Consensus 120 ~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 120 LPDALVALRMAVED---GGGLLMSFFSGPSLEPM---------YH----PVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHHHHHHHTEEE---EEEEEEEEECCSSCEEE---------CC----SSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHcCC---CcEEEEEEccCCchhhh---------hc----hhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 88999999999999 99999887654431110 00 0112345689999999999999999998775
Q ss_pred C
Q 018116 351 G 351 (360)
Q Consensus 351 ~ 351 (360)
.
T Consensus 184 ~ 184 (203)
T 3h2b_A 184 R 184 (203)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=138.78 Aligned_cols=143 Identities=18% Similarity=0.210 Sum_probs=111.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CccEEEecccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIP--PADAYFFKLVFHA 265 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~ 265 (360)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.+++||
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 356789999999999999999987 679999999 888887764 5789999999987 444 5999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
+++. ..+|++++++|+| ||.+++.+.......... .... ...........+.+++.++++++||++++
T Consensus 129 ~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 129 TEEP--LRALNEIKRVLKS---DGYACIAILGPTAKPREN------SYPR-LYGKDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp SSCH--HHHHHHHHHHEEE---EEEEEEEEECTTCGGGGG------GGGG-GGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCH--HHHHHHHHHHhCC---CeEEEEEEcCCcchhhhh------hhhh-hccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 9765 4789999999999 999999886543322111 1111 11111123457899999999999999999
Q ss_pred EEee
Q 018116 346 ITNV 349 (360)
Q Consensus 346 ~~~~ 349 (360)
...+
T Consensus 197 ~~~~ 200 (242)
T 3l8d_A 197 GIGV 200 (242)
T ss_dssp EEEE
T ss_pred eecc
Confidence 8765
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.8e-17 Score=145.21 Aligned_cols=152 Identities=15% Similarity=0.296 Sum_probs=114.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
+.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++..+|+.+ +.+ .||+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 46788999999999999999999999999999999 888887753 3579999999977 443 5999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh--hhcccCCcccCHHHHHHHHHHCC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL--MSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~--~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
+||+++.. .+|++++++|+| ||.+++.+.........+............ .....++..++..++.++|+++|
T Consensus 115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 189 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKP---GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESG 189 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTT
T ss_pred hhhcCCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCC
Confidence 99998864 789999999999 999999886543221100000000111111 11123455567789999999999
Q ss_pred CceeEEEee
Q 018116 341 FTHYKITNV 349 (360)
Q Consensus 341 f~~~~~~~~ 349 (360)
|+++++...
T Consensus 190 f~~v~~~~~ 198 (276)
T 3mgg_A 190 FEKIRVEPR 198 (276)
T ss_dssp CEEEEEEEE
T ss_pred CCeEEEeeE
Confidence 999888755
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-17 Score=148.97 Aligned_cols=165 Identities=13% Similarity=0.123 Sum_probs=118.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHH-HHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIIS-EAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~ 261 (360)
+.+..+|||||||+|.++..++ ..+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 5678899999999999999986 6788999999999 888887763 3569999999977 443 699999999
Q ss_pred ccccCChh-HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchh------hhhHh-HhhhhhhhcccC---CcccCHH
Q 018116 262 VFHAFGDE-DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQ------VTEAK-LLGDTLMSVSVD---GKERTDE 330 (360)
Q Consensus 262 ~lh~~~~~-~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~------~~~~~-~~~d~~~~~~~~---g~~~t~~ 330 (360)
++||++++ ...++|++++++|+| ||++++.+...+....... ..... ......+..... ...++.+
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 99999755 445799999999999 9999998876544322110 00000 000000100111 1346999
Q ss_pred HHHHHHHHCCCceeEEEeeCC-ceeEEEEeC
Q 018116 331 EWKTLFLDAGFTHYKITNVFG-LKSLIEVYP 360 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~~ 360 (360)
++.++|+++||+++++..... ....+.++|
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 999999999999999987633 344555543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.3e-17 Score=141.66 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=116.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-CccEEEe-ccccccCCh
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP-PADAYFF-KLVFHAFGD 268 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p-~~D~i~~-~~~lh~~~~ 268 (360)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4678999999999999999999866 8999999 999888765 4679999999977 444 5999995 559999854
Q ss_pred -hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhh--------------------HhHhhhhhhhccc-CC--
Q 018116 269 -EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTE--------------------AKLLGDTLMSVSV-DG-- 324 (360)
Q Consensus 269 -~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~--------------------~~~~~d~~~~~~~-~g-- 324 (360)
++..++|++++++|+| ||++++.+...++......... ......+.++... ++
T Consensus 117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGV 193 (239)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhcCC---CeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcc
Confidence 6778999999999999 8999887665543321100000 0000001111111 11
Q ss_pred ---------cccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 325 ---------KERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 325 ---------~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
+.++.++|.++|+++||+++.+....+...+++++|
T Consensus 194 ~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 194 RHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred eEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 346899999999999998777766666677777765
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-16 Score=143.88 Aligned_cols=144 Identities=11% Similarity=0.119 Sum_probs=113.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~ 261 (360)
+.+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE 193 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence 4567899999999999999999986 689999999 888887763 3589999999987 544 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
++||++ ..++|++++++|+| ||++++.+.......... ........-.. ....++.++|.++++++||
T Consensus 194 ~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~s~~~~~~~l~~aGf 261 (312)
T 3vc1_A 194 STMYVD---LHDLFSEHSRFLKV---GGRYVTITGCWNPRYGQP--SKWVSQINAHF----ECNIHSRREYLRAMADNRL 261 (312)
T ss_dssp CGGGSC---HHHHHHHHHHHEEE---EEEEEEEEEEECTTTCSC--CHHHHHHHHHH----TCCCCBHHHHHHHHHTTTE
T ss_pred chhhCC---HHHHHHHHHHHcCC---CcEEEEEEccccccccch--hHHHHHHHhhh----cCCCCCHHHHHHHHHHCCC
Confidence 999995 56899999999999 999999998876643211 01111111111 1236689999999999999
Q ss_pred ceeEEEee
Q 018116 342 THYKITNV 349 (360)
Q Consensus 342 ~~~~~~~~ 349 (360)
+++++..+
T Consensus 262 ~~~~~~~~ 269 (312)
T 3vc1_A 262 VPHTIVDL 269 (312)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99988775
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=145.01 Aligned_cols=162 Identities=16% Similarity=0.179 Sum_probs=121.9
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~ 254 (360)
..+++.++ ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ .++++++.+|+.+....|
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 34455555 67788999999999999999999987 89999999 888887764 348999999986553369
Q ss_pred cEEEeccccccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhh-----hHhHhhhhhh-hcc
Q 018116 255 DAYFFKLVFHAFGD-------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVT-----EAKLLGDTLM-SVS 321 (360)
Q Consensus 255 D~i~~~~~lh~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-----~~~~~~d~~~-~~~ 321 (360)
|+|++..++||+++ +....+|++++++|+| ||++++.+...+......... ......++.. ...
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 99999999999954 5667899999999999 999999988776532110000 0000011111 122
Q ss_pred cCCcccCHHHHHHHHHHCCCceeEEEeeC
Q 018116 322 VDGKERTDEEWKTLFLDAGFTHYKITNVF 350 (360)
Q Consensus 322 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
.++..++.+++.++++++||+++++....
T Consensus 216 p~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 216 PGGRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 35677899999999999999999887764
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=138.13 Aligned_cols=153 Identities=18% Similarity=0.264 Sum_probs=115.4
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--C
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--P 253 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~ 253 (360)
.++..+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .
T Consensus 12 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 12 LMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred hHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 3444455 67889999999999999999998864 8999999 888887764 2689999999976 444 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
||+|++..++||+++. .++|++++++|+| ||++++.+...+..... ......... .........++.++|.
T Consensus 88 fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~ 158 (239)
T 1xxl_A 88 FDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPEDPVL---DEFVNHLNR-LRDPSHVRESSLSEWQ 158 (239)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCSSHHH---HHHHHHHHH-HHCTTCCCCCBHHHHH
T ss_pred EEEEEECCchhhccCH--HHHHHHHHHHcCC---CcEEEEEEcCCCCChhH---HHHHHHHHH-hccccccCCCCHHHHH
Confidence 9999999999999875 5789999999999 99999998876553211 111111110 0011123557899999
Q ss_pred HHHHHCCCceeEEEee
Q 018116 334 TLFLDAGFTHYKITNV 349 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~ 349 (360)
++|+++||+++++...
T Consensus 159 ~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 159 AMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHCCCcEEEEEee
Confidence 9999999998877654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=144.98 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=120.0
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCcc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~D 255 (360)
.+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+....||
T Consensus 81 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD 157 (318)
T 2fk8_A 81 LNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVD 157 (318)
T ss_dssp HHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCS
T ss_pred HHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcC
Confidence 3444444 5677899999999999999999987 679999999 888887763 3679999999865324699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch----hhh-hHhHhhhhhh-hcccCCcccCH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH----QVT-EAKLLGDTLM-SVSVDGKERTD 329 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~----~~~-~~~~~~d~~~-~~~~~g~~~t~ 329 (360)
+|++..++||+++++..++|++++++|+| ||++++.+...+...... +.. ......++.. ....++..++.
T Consensus 158 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 234 (318)
T 2fk8_A 158 RIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPST 234 (318)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred EEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCH
Confidence 99999999999887788999999999999 999999998875522100 000 0000111111 11234567799
Q ss_pred HHHHHHHHHCCCceeEEEee
Q 018116 330 EEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~ 349 (360)
+++.++++++||+++++...
T Consensus 235 ~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 235 EMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHHhCCCEEEEEEec
Confidence 99999999999999887665
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=139.61 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=112.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~ 261 (360)
..+..+|||||||+|.++..+++.++. +++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++..
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 456789999999999999999999876 9999999 888887653 4679999999976 444 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
++||++ ..++|++++++|+| ||++++.+........... ........ .....+.++|.++++++||
T Consensus 123 ~l~~~~---~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~l~~aGf 188 (257)
T 3f4k_A 123 AIYNIG---FERGMNEWSKYLKK---GGFIAVSEASWFTSERPAE------IEDFWMDA--YPEISVIPTCIDKMERAGY 188 (257)
T ss_dssp CSCCCC---HHHHHHHHHTTEEE---EEEEEEEEEEESSSCCCHH------HHHHHHHH--CTTCCBHHHHHHHHHHTTE
T ss_pred hHhhcC---HHHHHHHHHHHcCC---CcEEEEEEeeccCCCChHH------HHHHHHHh--CCCCCCHHHHHHHHHHCCC
Confidence 999994 35789999999999 9999999987554433210 11111111 1235689999999999999
Q ss_pred ceeEEEeeC
Q 018116 342 THYKITNVF 350 (360)
Q Consensus 342 ~~~~~~~~~ 350 (360)
+++++...+
T Consensus 189 ~~v~~~~~~ 197 (257)
T 3f4k_A 189 TPTAHFILP 197 (257)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEECC
Confidence 999987764
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-16 Score=139.33 Aligned_cols=140 Identities=17% Similarity=0.245 Sum_probs=110.4
Q ss_pred CCCEEEEeCCCC---chHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCC------------C--C
Q 018116 195 GLGSIVDVGGGN---GGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQY------------I--P 252 (360)
Q Consensus 195 ~~~~iLDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~~------------~--p 252 (360)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ .++++|+.+|+.++ + .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 458999999999 999888888899999999999 999987764 47899999999752 2 3
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
.||+|++..+|||+++++..++|++++++|+| ||+|++.+...+. ... . ....+...........++.+++
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~~~--~~~-~---~~~~~~~~~~~~~~~~~s~~ei 227 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVDTG--LPA-Q---QKLARITRENLGEGWARTPEEI 227 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBCSS--CHH-H---HHHHHHHHHHHSCCCCBCHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecCcc--hHH-H---HHHHHHHHhcCCCCccCCHHHH
Confidence 69999999999999998888999999999999 9999999987532 111 1 1122222211123567899999
Q ss_pred HHHHHHCCCceeE
Q 018116 333 KTLFLDAGFTHYK 345 (360)
Q Consensus 333 ~~ll~~aGf~~~~ 345 (360)
.++| .||++++
T Consensus 228 ~~~l--~G~~l~~ 238 (274)
T 2qe6_A 228 ERQF--GDFELVE 238 (274)
T ss_dssp HHTT--TTCEECT
T ss_pred HHHh--CCCeEcc
Confidence 9999 5997665
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=139.69 Aligned_cols=133 Identities=19% Similarity=0.245 Sum_probs=108.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CccEEEecccccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP--PADAYFFKLVFHA 265 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~ 265 (360)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 45999999999999999876 5789999999 888887764 2569999999988333 5999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
+++++..++|++++++|+| ||++++.+.........+ ...++.++|.++|+++||++++
T Consensus 145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKP---DGELITLMYPITDHVGGP------------------PYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCSCCCSCS------------------SCCCCHHHHHHHHGGGTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCC---CcEEEEEEecccccCCCC------------------CccCCHHHHHHHHHHcCCeEEE
Confidence 9988888999999999999 999998776543321110 1225899999999999999999
Q ss_pred EEeeCC
Q 018116 346 ITNVFG 351 (360)
Q Consensus 346 ~~~~~~ 351 (360)
+...+.
T Consensus 204 ~~~~~~ 209 (235)
T 3lcc_A 204 VEENPH 209 (235)
T ss_dssp EEECTT
T ss_pred EEecCC
Confidence 887743
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-16 Score=147.17 Aligned_cols=145 Identities=16% Similarity=0.256 Sum_probs=113.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCCC--------------CCeEEEeCCCCC-------
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQT--------------ENLKYIAGDMFQ------- 249 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~ri~~~~~D~~~------- 249 (360)
..++.+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. .+++|+.+|+.+
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 3467899999999999999999987 7899999999 8888877641 699999999976
Q ss_pred CCC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCccc
Q 018116 250 YIP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKER 327 (360)
Q Consensus 250 ~~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~ 327 (360)
+++ .||+|++..++|++++. .++|++++++|+| ||+|++.+.......... ............+...
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 229 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRD---GGELYFSDVYADRRLSEA------AQQDPILYGECLGGAL 229 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEESSCCCHH------HHHCHHHHHTTCTTCC
T ss_pred CCCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCC---CCEEEEEEeccccccCHh------HhhhHHHhhcccccCC
Confidence 343 59999999999999875 5889999999999 999999998776543321 1111111212234567
Q ss_pred CHHHHHHHHHHCCCceeEEEe
Q 018116 328 TDEEWKTLFLDAGFTHYKITN 348 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~ 348 (360)
+.++|.++|+++||+.+++..
T Consensus 230 ~~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 230 YLEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp BHHHHHHHHHHTTCCCEEEEE
T ss_pred CHHHHHHHHHHCCCceEEEEe
Confidence 889999999999999876644
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=144.16 Aligned_cols=169 Identities=14% Similarity=0.145 Sum_probs=117.4
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C----CCeEEEeCCCCC-CC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----T----ENLKYIAGDMFQ-YI 251 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~----~ri~~~~~D~~~-~~ 251 (360)
..+++.++ ....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . .+++++.+|+.+ +.
T Consensus 73 ~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 73 REFATRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 34444444 33459999999999999999987 679999999 899988764 1 789999999987 44
Q ss_pred C-CccEEEe-ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch-----hhh-hHhHhhhhhh-----
Q 018116 252 P-PADAYFF-KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH-----QVT-EAKLLGDTLM----- 318 (360)
Q Consensus 252 p-~~D~i~~-~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~-----~~~-~~~~~~d~~~----- 318 (360)
+ .||+|++ ..++|++++++..++|++++++|+| ||+|++.....+...... .+. .....+.+..
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 224 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA 224 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCHHHHSCCCCC-------------CCEEEEEE
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecc
Confidence 4 5998886 4778888888889999999999999 899888776544210000 000 0000000000
Q ss_pred -----hc-c-------------cCCcccCHHHHHHHHHHCCCceeEEEeeCC------ceeEEEEe
Q 018116 319 -----SV-S-------------VDGKERTDEEWKTLFLDAGFTHYKITNVFG------LKSLIEVY 359 (360)
Q Consensus 319 -----~~-~-------------~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~------~~~vi~~~ 359 (360)
.. . ...+.++.++|.++|+++||+++++.++.. ...++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred ccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 00 0 011245999999999999999999998852 23466654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-16 Score=140.17 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=113.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~ 261 (360)
..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 456789999999999999999988 8889999999 888887764 3789999999977 444 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
++||++ ..++|++++++|+| ||++++.+.......... . ..+.... ......+.+++.++++++||
T Consensus 123 ~~~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~~~--~~~~~~~~~~~~~~l~~aGf 188 (267)
T 3kkz_A 123 AIYNIG---FERGLNEWRKYLKK---GGYLAVSECSWFTDERPA---E---INDFWMD--AYPEIDTIPNQVAKIHKAGY 188 (267)
T ss_dssp CGGGTC---HHHHHHHHGGGEEE---EEEEEEEEEEESSSCCCH---H---HHHHHHH--HCTTCEEHHHHHHHHHHTTE
T ss_pred CceecC---HHHHHHHHHHHcCC---CCEEEEEEeeecCCCChH---H---HHHHHHH--hCCCCCCHHHHHHHHHHCCC
Confidence 999993 35789999999999 999999998765443321 1 1111111 01245689999999999999
Q ss_pred ceeEEEeeC
Q 018116 342 THYKITNVF 350 (360)
Q Consensus 342 ~~~~~~~~~ 350 (360)
+++++..++
T Consensus 189 ~~v~~~~~~ 197 (267)
T 3kkz_A 189 LPVATFILP 197 (267)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
Confidence 999988765
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=132.08 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=116.4
Q ss_pred HHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCC--CCccEEEecc
Q 018116 186 KDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQYI--PPADAYFFKL 261 (360)
Q Consensus 186 ~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~~--p~~D~i~~~~ 261 (360)
++.++ ..+..+|||||||+|.++..+++... +++++|+ +.+++.+++ .+++++..+| .+. ..||+|++..
T Consensus 10 ~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 10 LPNIF--EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN 83 (170)
T ss_dssp HHHHH--SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred HHhcC--cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence 34444 66788999999999999999999873 9999999 888888765 6789999999 333 3699999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
++||+++. ..+|++++++|+| ||++++.+.........+ . ....++.++|.++++ ||
T Consensus 84 ~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~-------------~~~~~~~~~~~~~l~--Gf 140 (170)
T 3i9f_A 84 SFHDMDDK--QHVISEVKRILKD---DGRVIIIDWRKENTGIGP---P-------------LSIRMDEKDYMGWFS--NF 140 (170)
T ss_dssp CSTTCSCH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSS---C-------------GGGCCCHHHHHHHTT--TE
T ss_pred chhcccCH--HHHHHHHHHhcCC---CCEEEEEEcCccccccCc---h-------------HhhhcCHHHHHHHHh--Cc
Confidence 99999764 5789999999999 999999987765433221 0 012358999999999 99
Q ss_pred ceeEEEeeCCceeEEEEe
Q 018116 342 THYKITNVFGLKSLIEVY 359 (360)
Q Consensus 342 ~~~~~~~~~~~~~vi~~~ 359 (360)
+++++.........+.+.
T Consensus 141 ~~~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 141 VVEKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEEEECSSTTEEEEEEE
T ss_pred EEEEccCCCCceEEEEEe
Confidence 999999998776666554
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-15 Score=141.55 Aligned_cols=215 Identities=11% Similarity=-0.006 Sum_probs=139.0
Q ss_pred CcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh-hhhcCCCCChhhh
Q 018116 42 GIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA-LLIKDKSYCLSPL 120 (360)
Q Consensus 42 ~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~-~l~~~~~~~~~~~ 120 (360)
++|..| . +|.|++|||+.+|+ +++.+++||+.|.+.|+++.. ++ |++|+.+. ++.........+.
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~---~~~~v~~~L~~l~~~gll~~~-------~~-~~lt~~~~~~l~~~~~~~~~~~ 112 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEE---PLPLVVAILESLNELGYVTFE-------DG-VKLTEKGEELVAEYGIGKRYDF 112 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECS-------SS-SEECHHHHHHHHHHTCCCCCC-
T ss_pred HHHHHh-c--CCCCHHHHHHHhCC---ChHHHHHHHHHHhhCCcEEEC-------CC-EEECHHHHHHHHhcCccccccc
Confidence 789888 5 69999999999999 579999999999999999885 34 99999876 4444221111111
Q ss_pred hhhh-cC-c----cccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcC
Q 018116 121 VSGI-LD-P----ENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFE 194 (360)
Q Consensus 121 ~~~~-~~-~----~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~ 194 (360)
+... .+ . .+...|..+.+.++... .+. ..|+.....++. .. ..++........
T Consensus 113 ~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~-~~~------~~~~~~~~~~~~--~~------------~~~l~~~~~~~~ 171 (373)
T 2qm3_A 113 TCPHCQGKTVDLQAFADLLEQFREIVKDRP-EPL------HEFDQAYVTPET--TV------------ARVILMHTRGDL 171 (373)
T ss_dssp -----------CGGGHHHHHHHHHHHTTCC-CCC------GGGTCCCBCHHH--HH------------HHHHHHHHTTCS
T ss_pred cchhhcCCCcchhhhHHHHHHHHHHHhcCC-ccc------hhcCCeecCHHH--HH------------HHHHHHhhcCCC
Confidence 1000 00 0 01112334444444332 110 011110001110 00 011100110023
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-----CccEEEeccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP-----PADAYFFKLV 262 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p-----~~D~i~~~~~ 262 (360)
++.+||||| |+|.++..+++..|..+++++|+ +.+++.+++ ..+++++.+|+.+..| .||+|++...
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 568999999 99999999999988889999999 999988764 2389999999987432 5999999876
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
++.. ....+|+++.++|+| ||++++++...
T Consensus 251 ~~~~---~~~~~l~~~~~~Lkp---gG~~~~~~~~~ 280 (373)
T 2qm3_A 251 ETLE---AIRAFVGRGIATLKG---PRCAGYFGITR 280 (373)
T ss_dssp SSHH---HHHHHHHHHHHTBCS---TTCEEEEEECT
T ss_pred CchH---HHHHHHHHHHHHccc---CCeEEEEEEec
Confidence 6543 247899999999999 99876666543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=135.73 Aligned_cols=134 Identities=10% Similarity=0.053 Sum_probs=105.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------CCCeEEEeCCCCC-CC-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------------------TENLKYIAGDMFQ-YI- 251 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~ri~~~~~D~~~-~~- 251 (360)
..+..+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ..+++++++|+.+ +.
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456789999999999999999997 679999999 999887753 2589999999987 43
Q ss_pred --CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCH
Q 018116 252 --PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTD 329 (360)
Q Consensus 252 --p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~ 329 (360)
..||+|++..++|++++++..+++++++++|+| ||+++++....+..... ......+.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~~~~~~~~~-----------------~~~~~~~~ 157 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQALLE-----------------GPPFSVPQ 157 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCSSSSS-----------------SCCCCCCH
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCccccC-----------------CCCCCCCH
Confidence 359999999999999988888899999999999 99865554433211000 00112488
Q ss_pred HHHHHHHHHCCCceeEEEee
Q 018116 330 EEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~ 349 (360)
+++.+++++ ||+++.+...
T Consensus 158 ~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 158 TWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHHHHTSCS-SEEEEEEEES
T ss_pred HHHHHHhcC-CcEEEEeccc
Confidence 999999998 9998777655
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=139.89 Aligned_cols=138 Identities=15% Similarity=0.232 Sum_probs=111.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CccEEEeccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--PADAYFFKLVFH 264 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh 264 (360)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.. +.+ .||+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999998876 569999999 888887764 2368999999866 333 499999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCcee
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHY 344 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 344 (360)
|+++++..++|++++++|+| ||++++.+...... . .++. ......++.++|.++|+++||+++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~--~--------~~~~----~~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEG--V--------ILDD----VDSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSS--E--------EEET----TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCCCc--c--------eecc----cCCcccCCHHHHHHHHHHcCCeEE
Confidence 99998888999999999999 99999999876541 1 0000 012234589999999999999999
Q ss_pred EEEeeC
Q 018116 345 KITNVF 350 (360)
Q Consensus 345 ~~~~~~ 350 (360)
++....
T Consensus 221 ~~~~~~ 226 (241)
T 2ex4_A 221 AEERQE 226 (241)
T ss_dssp EEEECC
T ss_pred EeeecC
Confidence 987663
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-16 Score=133.97 Aligned_cols=144 Identities=11% Similarity=0.039 Sum_probs=104.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C----CCeEEEeCCCCC-CC--CCccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------T----ENLKYIAGDMFQ-YI--PPADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~----~ri~~~~~D~~~-~~--p~~D~i 257 (360)
..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++ . .+++++.+|+.. +. ..||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 35678999999999999999999988899999999 888887764 1 289999999965 33 269999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH----
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK---- 333 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~---- 333 (360)
++..++||+++++..++|++++++|+| ||.+++.. ......... ...............++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRP---QTVIVSTP-NKEYNFHYG------NLFEGNLRHRDHRFEWTRKEFQTWAV 176 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEE-BGGGGGCCC------CT-----GGGCCTTSBCHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCC---CEEEEEcc-chhhhhhhc------ccCcccccccCceeeecHHHHHHHHH
Confidence 999999999998888999999999999 88544433 221110000 0000000001112345888888
Q ss_pred HHHHHCCCceeEE
Q 018116 334 TLFLDAGFTHYKI 346 (360)
Q Consensus 334 ~ll~~aGf~~~~~ 346 (360)
++++++||++...
T Consensus 177 ~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 177 KVAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHHTEEEEEE
T ss_pred HHHHHCCcEEEEE
Confidence 8899999965443
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-16 Score=135.13 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=109.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC-CccEEEeccccccCChh
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP-PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~~~~~ 269 (360)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++++..+|+.. +.+ .||+|++..++||++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 456789999999999999999987 679999999 8888888754478888999876 422 59999999999999988
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC-CceeEEEe
Q 018116 270 DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG-FTHYKITN 348 (360)
Q Consensus 270 ~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG-f~~~~~~~ 348 (360)
+...+|++++++|+| ||++++........... ... .....++.++|.++|+++| |+++++..
T Consensus 119 ~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~--------~~~------~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 119 ELADVLKLIWRALKP---GGLFYASYKSGEGEGRD--------KLA------RYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHEEE---EEEEEEEEECCSSCEEC--------TTS------CEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHhcCC---CcEEEEEEcCCCccccc--------ccc------hhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 889999999999999 89988875433221111 000 0113469999999999999 99998876
Q ss_pred e
Q 018116 349 V 349 (360)
Q Consensus 349 ~ 349 (360)
.
T Consensus 182 ~ 182 (211)
T 3e23_A 182 S 182 (211)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.2e-16 Score=134.08 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=110.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCC-CCC--CccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQ-YIP--PADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~-~~p--~~D~i 257 (360)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.. +.+ .||+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 356789999999999999999988 679999999 888776653 2368999999977 443 59999
Q ss_pred EeccccccCChh-HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhccc--------------
Q 018116 258 FFKLVFHAFGDE-DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV-------------- 322 (360)
Q Consensus 258 ~~~~~lh~~~~~-~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-------------- 322 (360)
++..++||+++. ...++|++++++|+| ||++++.+......... . .......+......
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQNWHLKL--Y-RKRYLHDFPITKEEGSFLARDPETGETE 179 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCTTSHH--H-HHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCcchhHHH--H-HHHhhhhccchhhhcceEecccccCCcc
Confidence 999999999764 466899999999999 99999998766443221 1 11111111110000
Q ss_pred -CCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 323 -DGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 323 -~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
....++.++|.++|+++||+++++...
T Consensus 180 ~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 180 FIAHHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp EEEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eeeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence 013569999999999999999888644
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.5e-16 Score=135.12 Aligned_cols=144 Identities=14% Similarity=0.184 Sum_probs=107.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCCCCC--CccEEEeccccccCCh
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQYIP--PADAYFFKLVFHAFGD 268 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~~~~ 268 (360)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++.+++||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 4567899999999999999998865 7999999 888887764 2289999999876433 5999999999999987
Q ss_pred hHHHHHHHHHH-HhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh---------hhcccCCcccCHHHHHHHHHH
Q 018116 269 EDCLKILKKCR-EAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL---------MSVSVDGKERTDEEWKTLFLD 338 (360)
Q Consensus 269 ~~~~~~L~~~~-~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~---------~~~~~~g~~~t~~e~~~ll~~ 338 (360)
. .++|++++ ++|+| ||++++.++....... ......... .........++.+++.++|++
T Consensus 119 ~--~~~l~~~~~~~Lkp---gG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (250)
T 2p7i_A 119 P--VALLKRINDDWLAE---GGRLFLVCPNANAVSR-----QIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR 188 (250)
T ss_dssp H--HHHHHHHHHTTEEE---EEEEEEEEECTTCHHH-----HHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCC---CCEEEEEcCChHHHHH-----HHHHHcCccccchhcccccccccccccCCHHHHHHHHHH
Confidence 6 57899999 99999 9999998754332100 000000000 000112346799999999999
Q ss_pred CCCceeEEEee
Q 018116 339 AGFTHYKITNV 349 (360)
Q Consensus 339 aGf~~~~~~~~ 349 (360)
+||+++++...
T Consensus 189 ~Gf~~~~~~~~ 199 (250)
T 2p7i_A 189 AGLQVTYRSGI 199 (250)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCeEEEEeee
Confidence 99999988654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=137.75 Aligned_cols=154 Identities=15% Similarity=0.103 Sum_probs=114.0
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-CccEE
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP-PADAY 257 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p-~~D~i 257 (360)
...+++.+. ..+..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..++++..+|+.. +.+ .||+|
T Consensus 46 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 121 (279)
T 3ccf_A 46 GEDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAV 121 (279)
T ss_dssp CCHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEE
T ss_pred HHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEE
Confidence 345556565 56778999999999999999998 7889999999 888887764 4789999999977 444 59999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh-h------cccCCcccCHH
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM-S------VSVDGKERTDE 330 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~------~~~~g~~~t~~ 330 (360)
++..++||+++. .++|++++++|+| ||++++......... . . ......... . .......++.+
T Consensus 122 ~~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~-~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (279)
T 3ccf_A 122 FSNAMLHWVKEP--EAAIASIHQALKS---GGRFVAEFGGKGNIK-Y--I--LEALYNALETLGIHNPQALNPWYFPSIG 191 (279)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECTTTTH-H--H--HHHHHHHHHHHTCCCGGGGCCCCCCCHH
T ss_pred EEcchhhhCcCH--HHHHHHHHHhcCC---CcEEEEEecCCcchH-H--H--HHHHHHHHHhcCCccccCcCceeCCCHH
Confidence 999999999875 4789999999999 999988765432211 0 0 011111100 0 00112345899
Q ss_pred HHHHHHHHCCCceeEEEee
Q 018116 331 EWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~ 349 (360)
+|.++|+++||+++++...
T Consensus 192 ~~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 192 EYVNILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHcCCEEEEEEEe
Confidence 9999999999998877654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-16 Score=134.78 Aligned_cols=143 Identities=13% Similarity=0.027 Sum_probs=103.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C-------CCeEEEeCCCCC-CC--CCccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----T-------ENLKYIAGDMFQ-YI--PPADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-------~ri~~~~~D~~~-~~--p~~D~i 257 (360)
..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ . .+++++.+|+.. +. ..||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 45678999999999999999999988899999999 888887753 1 289999999865 33 269999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH----
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK---- 333 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~---- 333 (360)
++..++||+++++..++|++++++|+| ||.+++........ ..................++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTPNIEYNV-------KFANLPAGKLRHKDHRFEWTRSQFQNWAN 176 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEBHHHHH-------HTC-----------CCSCBCHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEccCcccch-------hhcccccccccccccccccCHHHHHHHHH
Confidence 999999999998888999999999999 88555543311000 0000000000001112345888888
Q ss_pred HHHHHCCCceeE
Q 018116 334 TLFLDAGFTHYK 345 (360)
Q Consensus 334 ~ll~~aGf~~~~ 345 (360)
++++++||++..
T Consensus 177 ~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 177 KITERFAYNVQF 188 (217)
T ss_dssp HHHHHSSEEEEE
T ss_pred HHHHHcCceEEE
Confidence 899999997644
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-16 Score=137.69 Aligned_cols=150 Identities=16% Similarity=0.113 Sum_probs=107.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CccEEEecccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIP--PADAYFFKLVFHA 265 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~ 265 (360)
..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.. +.+ .||+|++..++||
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 120 (253)
T 3g5l_A 42 DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHY 120 (253)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGG
T ss_pred ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhh
Confidence 346789999999999999999998554 9999999 888887764 5789999999976 443 5999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC------------CCcchhhhhHhHhhhhhhh----c--ccCCccc
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE------------KEDKHQVTEAKLLGDTLMS----V--SVDGKER 327 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~------------~~~~~~~~~~~~~~d~~~~----~--~~~g~~~ 327 (360)
+++. .++|++++++|+| ||++++....... ....... .....++-... . ......+
T Consensus 121 ~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (253)
T 3g5l_A 121 IASF--DDICKKVYINLKS---SGSFIFSVEHPVFTADGRQDWYTDETGNKLHW-PVDRYFNESMRTSHFLGEDVQKYHR 194 (253)
T ss_dssp CSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHSSSSCSCEECSSCCEEEE-EECCTTCCCEEEEEETTEEEEEECC
T ss_pred hhhH--HHHHHHHHHHcCC---CcEEEEEeCCCccccCccccceeccCCceEEE-EeccccccceEEEeeccccCccEec
Confidence 9664 6889999999999 9999886543210 0000000 00000000000 0 0011234
Q ss_pred CHHHHHHHHHHCCCceeEEEee
Q 018116 328 TDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
|.++|.++|+++||+++++...
T Consensus 195 t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 195 TVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp CHHHHHHHHHHTTEEEEEEECC
T ss_pred CHHHHHHHHHHcCCeeeeeecC
Confidence 9999999999999999998755
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.65 E-value=9.8e-16 Score=138.38 Aligned_cols=151 Identities=15% Similarity=0.203 Sum_probs=110.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D~i~~~~~l 263 (360)
..+..+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 45778999999999999999999998 489999999 888876653 3489999999987 444 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec-----C---CCCcchhhhhHhHhhhhhhh--cccCCcccCHHHHH
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI-----N---EKEDKHQVTEAKLLGDTLMS--VSVDGKERTDEEWK 333 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~-----~---~~~~~~~~~~~~~~~d~~~~--~~~~g~~~t~~e~~ 333 (360)
||+++. .++|++++++|+| ||.+++.++.. . .............+..+... ...+....+..++.
T Consensus 100 ~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (284)
T 3gu3_A 100 LHMTTP--ETMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP 174 (284)
T ss_dssp GGCSSH--HHHHHHHHHTEEE---EEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHH
T ss_pred hcCCCH--HHHHHHHHHHcCC---CCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHH
Confidence 999876 4789999999999 99999988761 1 11110000000111111110 01233345667899
Q ss_pred HHHHHCCCceeEEEe
Q 018116 334 TLFLDAGFTHYKITN 348 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~ 348 (360)
++|+++||+.+++..
T Consensus 175 ~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 175 IYLSELGVKNIECRV 189 (284)
T ss_dssp HHHHHTTCEEEEEEE
T ss_pred HHHHHcCCCeEEEEE
Confidence 999999999887743
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=134.21 Aligned_cols=151 Identities=14% Similarity=0.168 Sum_probs=113.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYF 258 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~ 258 (360)
..+++.++ ..+..+|||||||+|.++..+++ ++.+++++|+ +.+++.++...+++|+.+|+.+ +++ .||+|+
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 34445554 56789999999999999999997 6889999999 9999999876699999999977 544 599999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHH
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLD 338 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~ 338 (360)
+.+++||+++. .++|++++++|+ ||++++.+...+...... ......... .......++.+++. +|++
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk----gG~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~-~l~~ 167 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR----DGTIVLLTFDIRLAQRIW---LYDYFPFLW--EDALRFLPLDEQIN-LLQE 167 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC----SSCEEEEEECGGGCCCCG---GGGTCHHHH--HHHHTSCCHHHHHH-HHHH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC----CcEEEEEEcCCchhHHHH---HHHHHHHHh--hhhhhhCCCHHHHH-HHHH
Confidence 99999999764 578999999998 499999887654332211 000000000 01113345778888 9999
Q ss_pred CCCceeEEEee
Q 018116 339 AGFTHYKITNV 349 (360)
Q Consensus 339 aGf~~~~~~~~ 349 (360)
+||+.+++...
T Consensus 168 aGF~~v~~~~~ 178 (261)
T 3ege_A 168 NTKRRVEAIPF 178 (261)
T ss_dssp HHCSEEEEEEC
T ss_pred cCCCceeEEEe
Confidence 99998888665
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-15 Score=131.29 Aligned_cols=157 Identities=18% Similarity=0.154 Sum_probs=108.7
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CccEE
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIP--PADAY 257 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p--~~D~i 257 (360)
+...++ ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|
T Consensus 35 l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 35 LRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHSC--CCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 444444 4567899999999999999999872 239999999 888887754 3579999999976 443 59999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch-hh--h-------hHhHhhh-----hhhhc-c
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH-QV--T-------EAKLLGD-----TLMSV-S 321 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~-~~--~-------~~~~~~d-----~~~~~-~ 321 (360)
++..++||+++. .++|++++++|+| ||++++............ .. . .....+. ..... .
T Consensus 112 ~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (243)
T 3bkw_A 112 YSSLALHYVEDV--ARLFRTVHQALSP---GGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKG 186 (243)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHS
T ss_pred EEeccccccchH--HHHHHHHHHhcCc---CcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCc
Confidence 999999999764 5889999999999 999998764321000000 00 0 0000000 00000 0
Q ss_pred cCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 322 VDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 322 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.....++.++|.++|+++||+++++...
T Consensus 187 ~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 187 VVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred eEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 1122358999999999999999988764
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=136.09 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=109.8
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-CccEEEec
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP-PADAYFFK 260 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p-~~D~i~~~ 260 (360)
++..+. ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.
T Consensus 25 l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 102 (259)
T 2p35_A 25 LLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYAN 102 (259)
T ss_dssp HHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEe
Confidence 444444 45678999999999999999999999999999999 899888765 5789999999977 422 59999999
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc----ccCCcccCHHHHHHHH
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV----SVDGKERTDEEWKTLF 336 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~----~~~g~~~t~~e~~~ll 336 (360)
.++||+++. .++|++++++|+| ||++++......................+.... .......+.++|.++|
T Consensus 103 ~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (259)
T 2p35_A 103 AVFQWVPDH--LAVLSQLMDQLES---GGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNAL 177 (259)
T ss_dssp SCGGGSTTH--HHHHHHHGGGEEE---EEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHH
T ss_pred CchhhCCCH--HHHHHHHHHhcCC---CeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHH
Confidence 999999764 5789999999999 999998875432211100000000000000000 0123456899999999
Q ss_pred HHCCCcee
Q 018116 337 LDAGFTHY 344 (360)
Q Consensus 337 ~~aGf~~~ 344 (360)
+++||.+.
T Consensus 178 ~~aGf~v~ 185 (259)
T 2p35_A 178 SPKSSRVD 185 (259)
T ss_dssp GGGEEEEE
T ss_pred HhcCCceE
Confidence 99999743
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-15 Score=127.35 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=110.9
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-Cc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP-PA 254 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p-~~ 254 (360)
.+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .|
T Consensus 23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 98 (199)
T 2xvm_A 23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY 98 (199)
T ss_dssp HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCE
T ss_pred HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCc
Confidence 3444444 446679999999999999999987 679999999 888887764 2479999999876 334 59
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..++||+++++..++|++++++|+| ||.+++++.........+ ......++.+++.+
T Consensus 99 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~ 160 (199)
T 2xvm_A 99 DFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---------------VGFPFAFKEGELRR 160 (199)
T ss_dssp EEEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCC---------------SCCSCCBCTTHHHH
T ss_pred eEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccCCcCCC---------------CCCCCccCHHHHHH
Confidence 999999999999988888999999999999 999998887655432110 01123458899999
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
+|++ |++++....
T Consensus 161 ~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 161 YYEG--WERVKYNED 173 (199)
T ss_dssp HTTT--SEEEEEECC
T ss_pred HhcC--CeEEEeccc
Confidence 9987 988877543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=132.03 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=81.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CccEEEecc-cccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PADAYFFKL-VFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D~i~~~~-~lh~ 265 (360)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 6789999999999999999988 568999999 888887764 2389999999976 444 699999998 9999
Q ss_pred CC-hhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 266 FG-DEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 266 ~~-~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
++ +++..++|++++++|+| ||.+++.
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~ 141 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE---GGVFIFD 141 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE---EEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEEE
Confidence 94 36778999999999999 8888763
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-16 Score=143.33 Aligned_cols=146 Identities=15% Similarity=0.240 Sum_probs=105.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCC-----------------------------------
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQT----------------------------------- 237 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------------------- 237 (360)
.+..+|||||||+|.++..+++.++..+++++|+ +.+++.|++.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 4678999999999999999999999999999999 8888766420
Q ss_pred -----------------------------CCeEEEeCCCCCCC--------CCccEEEeccccccC----ChhHHHHHHH
Q 018116 238 -----------------------------ENLKYIAGDMFQYI--------PPADAYFFKLVFHAF----GDEDCLKILK 276 (360)
Q Consensus 238 -----------------------------~ri~~~~~D~~~~~--------p~~D~i~~~~~lh~~----~~~~~~~~L~ 276 (360)
.+|+|..+|+.... +.||+|++..+++|+ +++...++|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 58999999998622 259999999999776 6778889999
Q ss_pred HHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHH--CCCceeEEEee
Q 018116 277 KCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLD--AGFTHYKITNV 349 (360)
Q Consensus 277 ~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~--aGf~~~~~~~~ 349 (360)
+++++|+| ||+|++....... +......... ...........++++.++|.+ +||+.+++...
T Consensus 205 ~~~~~Lkp---GG~lil~~~~~~~------y~~~~~~~~~-~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 205 RIYRHLRP---GGILVLEPQPWSS------YGKRKTLTET-IYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHEEE---EEEEEEECCCHHH------HHTTTTSCHH-HHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHhCC---CcEEEEecCCchh------hhhhhcccHH-HHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999 8888774321110 0000000000 000001123357899999999 99988887655
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-15 Score=133.24 Aligned_cols=159 Identities=12% Similarity=0.120 Sum_probs=114.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hH------HHhcCCC-------CCCeEEEeCC-
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PH------AVANMPQ-------TENLKYIAGD- 246 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~-------~~ri~~~~~D- 246 (360)
..+++.++ ..+..+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++ .++++++.+|
T Consensus 33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 34555555 6778899999999999999999996 7789999999 54 6666543 2689999998
Q ss_pred CCC---CCC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhH-hHhhhhhh--
Q 018116 247 MFQ---YIP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEA-KLLGDTLM-- 318 (360)
Q Consensus 247 ~~~---~~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~-~~~~d~~~-- 318 (360)
+.. +++ .||+|++..++||+++.+ .+++.++++++| ||++++.+...+...... .... .......+
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 184 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYA 184 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHH
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhh
Confidence 433 223 599999999999999875 377777787888 999999998876543221 1110 00100000
Q ss_pred hc---cc-CCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 319 SV---SV-DGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 319 ~~---~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.. .. ....++.+++.++++++||+++++..+
T Consensus 185 ~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 185 IAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp HSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 00 01 113569999999999999999888766
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=137.16 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=109.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-CC--CccEEEeccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-Y-IP--PADAYFFKLV 262 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~-~p--~~D~i~~~~~ 262 (360)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ + .+ .||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4679999999999999999988 779999999 888887764 2789999999977 3 23 5999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc--------ccCCcccCHHHHHH
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV--------SVDGKERTDEEWKT 334 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~g~~~t~~e~~~ 334 (360)
+||+++. .++|++++++|+| ||.+++.+.......... .....+...... ......++.+++.+
T Consensus 146 l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (285)
T 4htf_A 146 LEWVADP--RSVLQTLWSVLRP---GGVLSLMFYNAHGLLMHN---MVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYL 217 (285)
T ss_dssp GGGCSCH--HHHHHHHHHTEEE---EEEEEEEEEBHHHHHHHH---HHTTCHHHHHTTCCCC----CCCSCCBCHHHHHH
T ss_pred hhcccCH--HHHHHHHHHHcCC---CeEEEEEEeCCchHHHHH---HHhcCHHHHhhhccccccccCCCCCCCCHHHHHH
Confidence 9999876 5789999999999 999998876543211000 000000000000 01124568999999
Q ss_pred HHHHCCCceeEEEeeCC
Q 018116 335 LFLDAGFTHYKITNVFG 351 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~~ 351 (360)
+|+++||+++++..+..
T Consensus 218 ~l~~aGf~v~~~~~~~~ 234 (285)
T 4htf_A 218 WLEEAGWQIMGKTGVRV 234 (285)
T ss_dssp HHHHTTCEEEEEEEESS
T ss_pred HHHHCCCceeeeeeEEE
Confidence 99999999999887743
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=132.61 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=109.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC-------CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIP-------PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p-------~~D~i~~~ 260 (360)
..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 35678999999999999999999977 8999999 888887754 4589999999987 221 38999999
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhH--h--HhhhhhhhcccCCcccCHHHHHHHH
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEA--K--LLGDTLMSVSVDGKERTDEEWKTLF 336 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~--~--~~~d~~~~~~~~g~~~t~~e~~~ll 336 (360)
.++||+++++..++|++++++|+| ||++++.+...+........... . ......+........++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 999999988889999999999999 99999999865431100000000 0 0000001000111236899999999
Q ss_pred HHCCCceeEEEee
Q 018116 337 LDAGFTHYKITNV 349 (360)
Q Consensus 337 ~~aGf~~~~~~~~ 349 (360)
+||++++...+
T Consensus 209 --aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 --PDFEILSQGEG 219 (245)
T ss_dssp --TTEEEEEEECC
T ss_pred --CCCEEEecccc
Confidence 99998876544
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-14 Score=120.61 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=105.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CccEEEec-cccccCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP--PADAYFFK-LVFHAFG 267 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p--~~D~i~~~-~~lh~~~ 267 (360)
.+..+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++. .++|+++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 56789999999999999999987 679999999 888887765 5679999999987 444 59999998 8999998
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEE
Q 018116 268 DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKIT 347 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
+++..++|++++++|+| ||.+++.... ...++.+++.++++++||+++++.
T Consensus 123 ~~~~~~~l~~~~~~l~~---~G~l~~~~~~--------------------------~~~~~~~~~~~~l~~~Gf~~~~~~ 173 (195)
T 3cgg_A 123 EDGREPALANIHRALGA---DGRAVIGFGA--------------------------GRGWVFGDFLEVAERVGLELENAF 173 (195)
T ss_dssp HHHHHHHHHHHHHHEEE---EEEEEEEEET--------------------------TSSCCHHHHHHHHHHHTEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCC---CCEEEEEeCC--------------------------CCCcCHHHHHHHHHHcCCEEeeee
Confidence 88888999999999999 8988875421 112478999999999999998886
Q ss_pred ee
Q 018116 348 NV 349 (360)
Q Consensus 348 ~~ 349 (360)
..
T Consensus 174 ~~ 175 (195)
T 3cgg_A 174 ES 175 (195)
T ss_dssp SS
T ss_pred cc
Confidence 54
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.8e-15 Score=129.33 Aligned_cols=96 Identities=20% Similarity=0.337 Sum_probs=80.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CccEEEecc-cc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PADAYFFKL-VF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D~i~~~~-~l 263 (360)
+.+..+|||||||+|.++..+++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSL 107 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGG
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCch
Confidence 345689999999999999998876 79999999 888887764 3679999999876 444 599999986 99
Q ss_pred ccC-ChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 264 HAF-GDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 264 h~~-~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
||+ +.++..++|++++++|+| ||.+++.
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~ 136 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTD---GGKLLFD 136 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCC---CeEEEEE
Confidence 998 556778999999999999 8888763
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=132.50 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=110.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-----CC-C-cc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY-----IP-P-AD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~-----~p-~-~D 255 (360)
.++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+... .+ . ||
T Consensus 43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence 3455554 456699999999999999999987 679999999 99998887767888888887541 12 3 99
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc------cCCcccCH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS------VDGKERTD 329 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~------~~g~~~t~ 329 (360)
+|++.+++| .++. .++|++++++|+| ||++++.+.......... +.. .+........ .....++.
T Consensus 119 ~v~~~~~l~-~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 189 (227)
T 3e8s_A 119 LICANFALL-HQDI--IELLSAMRTLLVP---GGALVIQTLHPWSVADGD-YQD--GWREESFAGFAGDWQPMPWYFRTL 189 (227)
T ss_dssp EEEEESCCC-SSCC--HHHHHHHHHTEEE---EEEEEEEECCTTTTCTTC-CSC--EEEEECCTTSSSCCCCEEEEECCH
T ss_pred EEEECchhh-hhhH--HHHHHHHHHHhCC---CeEEEEEecCccccCccc-ccc--ccchhhhhccccCcccceEEEecH
Confidence 999999999 5543 5789999999999 999999887654332110 000 0000000000 01134599
Q ss_pred HHHHHHHHHCCCceeEEEee
Q 018116 330 EEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~ 349 (360)
++|.++|+++||+++++...
T Consensus 190 ~~~~~~l~~aGf~~~~~~~~ 209 (227)
T 3e8s_A 190 ASWLNALDMAGLRLVSLQEP 209 (227)
T ss_dssp HHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHHcCCeEEEEecC
Confidence 99999999999999998763
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-14 Score=123.54 Aligned_cols=136 Identities=14% Similarity=0.145 Sum_probs=102.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEEeccccccCChhH
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDED 270 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~ 270 (360)
+..+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +.+ .||+|++.+++||+++.
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~- 118 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP- 118 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH-
Confidence 3789999999999999888754 99999 8888887644 79999999876 443 59999999999999765
Q ss_pred HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhh--cccCCcccCHHHHHHHHHHCCCceeEEEe
Q 018116 271 CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMS--VSVDGKERTDEEWKTLFLDAGFTHYKITN 348 (360)
Q Consensus 271 ~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
.++|++++++|+| ||.+++.+...... ... ........ .......++.++|.++|+++||+++++..
T Consensus 119 -~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 187 (219)
T 1vlm_A 119 -ERALKEAYRILKK---GGYLIVGIVDRESF-----LGR--EYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187 (219)
T ss_dssp -HHHHHHHHHHEEE---EEEEEEEEECSSSH-----HHH--HHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred -HHHHHHHHHHcCC---CcEEEEEEeCCccH-----HHH--HHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence 5789999999999 99999877643221 000 11111000 01123456999999999999999988866
Q ss_pred e
Q 018116 349 V 349 (360)
Q Consensus 349 ~ 349 (360)
.
T Consensus 188 ~ 188 (219)
T 1vlm_A 188 T 188 (219)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-15 Score=129.75 Aligned_cols=133 Identities=10% Similarity=0.002 Sum_probs=105.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEeCCCCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------------------TENLKYIAGDMFQ 249 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~ri~~~~~D~~~ 249 (360)
.+..+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++|+++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46789999999999999999987 679999999 888886632 2589999999988
Q ss_pred -CC---CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCc
Q 018116 250 -YI---PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGK 325 (360)
Q Consensus 250 -~~---p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~ 325 (360)
+. ..||+|++..++|++++++..+++++++++|+| ||+++++....+..... ....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~~~~~~~-----------------g~~~ 204 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSYDPTKHA-----------------GPPF 204 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTSCC-----------------CSSC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEecCCccCC-----------------CCCC
Confidence 33 369999999999999988888999999999999 99997766553321100 0011
Q ss_pred ccCHHHHHHHHHHCCCceeEEEee
Q 018116 326 ERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 326 ~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
..+.+++.++|++ +|+++.....
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEecc
Confidence 2589999999987 5988776544
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=125.10 Aligned_cols=143 Identities=20% Similarity=0.245 Sum_probs=105.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCC--CccEEEeccccccCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ---YIP--PADAYFFKLVFHAFG 267 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~---~~p--~~D~i~~~~~lh~~~ 267 (360)
.+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++. ..++..+|+.+ +.+ .||+|++.+++||++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~ 107 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF 107 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSS
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccCEEEECChhhhcC
Confidence 46789999999999999999988 4 89999999 8888887642 24788999865 233 599999999999998
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh------hcccCCcccCHHHHHHHHHHCCC
Q 018116 268 DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM------SVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~------~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
+. .++|++++++|+| ||.+++..+....... . ......... ........++.++|.++++++||
T Consensus 108 ~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 177 (230)
T 3cc8_A 108 DP--WAVIEKVKPYIKQ---NGVILASIPNVSHISV---L--APLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGY 177 (230)
T ss_dssp CH--HHHHHHTGGGEEE---EEEEEEEEECTTSHHH---H--HHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTE
T ss_pred CH--HHHHHHHHHHcCC---CCEEEEEeCCcchHHH---H--HHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCC
Confidence 76 4789999999999 9999987654322100 0 000000000 00011245699999999999999
Q ss_pred ceeEEEee
Q 018116 342 THYKITNV 349 (360)
Q Consensus 342 ~~~~~~~~ 349 (360)
+++++...
T Consensus 178 ~~~~~~~~ 185 (230)
T 3cc8_A 178 SISKVDRV 185 (230)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEec
Confidence 99988776
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.5e-15 Score=131.17 Aligned_cols=140 Identities=15% Similarity=0.131 Sum_probs=104.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CC-------------------------------
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TE------------------------------- 238 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~------------------------------- 238 (360)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4568999999999999998887754 58999999 888887753 11
Q ss_pred -Ce-EEEeCCCCCC-C------CCccEEEeccccccCCh--hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhh
Q 018116 239 -NL-KYIAGDMFQY-I------PPADAYFFKLVFHAFGD--EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQV 307 (360)
Q Consensus 239 -ri-~~~~~D~~~~-~------p~~D~i~~~~~lh~~~~--~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~ 307 (360)
++ ++..+|+.+. . ..||+|++..++|++++ ++..++|++++++|+| ||++++.+..... .
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~---~--- 204 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDALKSS---Y--- 204 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCC---E---
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEecCCCc---e---
Confidence 27 9999999772 1 24999999999996543 3567899999999999 9999998843321 0
Q ss_pred hhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeC
Q 018116 308 TEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVF 350 (360)
Q Consensus 308 ~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
+... .........+.+++.++|+++||+++++...+
T Consensus 205 ------~~~~-~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 205 ------YMIG-EQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp ------EEET-TEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ------EEcC-CccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 0000 00001234588999999999999999887664
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=128.05 Aligned_cols=145 Identities=13% Similarity=0.109 Sum_probs=104.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP--PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p--~~D~i~~~~~l 263 (360)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 679999999 888877653 4789999999976 444 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhccc----CCcccCHHHHHHHHHHC
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV----DGKERTDEEWKTLFLDA 339 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~----~g~~~t~~e~~~ll~~a 339 (360)
||+++. .++|++++++|+| ||.+++. ...+..... ......+..+...... .....+.+++.++|+++
T Consensus 115 ~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKP---GGALLEG-WDQAEASPE--WTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRL 186 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEE---EEEEEEE-EEEECCCHH--HHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHT
T ss_pred hhcCCH--HHHHHHHHHHCCC---CcEEEEE-ecCCCccHH--HHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHc
Confidence 999864 5789999999999 8998887 222111110 0000111111110000 11245789999999999
Q ss_pred CCceeEEE
Q 018116 340 GFTHYKIT 347 (360)
Q Consensus 340 Gf~~~~~~ 347 (360)
||+++.+.
T Consensus 187 Gf~~~~~~ 194 (263)
T 2yqz_A 187 GLKPRTRE 194 (263)
T ss_dssp TCCCEEEE
T ss_pred CCCcceEE
Confidence 99977653
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-14 Score=127.64 Aligned_cols=99 Identities=15% Similarity=0.205 Sum_probs=86.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEEeccccccCChh
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~ 269 (360)
....+|||||||+|.++..|++.+ .+++++|+ +.|++.+++..+++++.+|+.+ +++ .||+|++..++|+++.+
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~ 115 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD 115 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH
Confidence 356799999999999999999874 58999999 9999999988999999999977 555 59999999999988653
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 270 DCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 270 ~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
+++++++++|+| ||.|+++....+.
T Consensus 116 ---~~~~e~~rvLkp---gG~l~~~~~~~~~ 140 (257)
T 4hg2_A 116 ---RFWAELRRVARP---GAVFAAVTYGLTR 140 (257)
T ss_dssp ---HHHHHHHHHEEE---EEEEEEEEECCCB
T ss_pred ---HHHHHHHHHcCC---CCEEEEEECCCCC
Confidence 679999999999 9999988765443
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=130.88 Aligned_cols=141 Identities=14% Similarity=0.100 Sum_probs=101.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC-C--C------CCc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQ-Y--I------PPA 254 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~-~--~------p~~ 254 (360)
.+..+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ ..+++|+.+|+.+ + . ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 578899999999999999999987 8999999999 888887753 5799999999977 3 2 259
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc-ccCCcc--cCHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV-SVDGKE--RTDEE 331 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~g~~--~t~~e 331 (360)
|+|++..++||+ + ..++|++++++|+| ||.|++.+...+.....+.... ....+.... ..+... ...+.
T Consensus 115 D~V~~~~~l~~~-~--~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~w~~p~~~~ 186 (299)
T 3g5t_A 115 DMITAVECAHWF-D--FEKFQRSAYANLRK---DGTIAIWGYADPIFPDYPEFDD--LMIEVPYGKQGLGPYWEQPGRSR 186 (299)
T ss_dssp EEEEEESCGGGS-C--HHHHHHHHHHHEEE---EEEEEEEEEEEEECTTCGGGTT--HHHHHHHCTTTTGGGSCTTHHHH
T ss_pred eEEeHhhHHHHh-C--HHHHHHHHHHhcCC---CcEEEEEecCCccccCcHHHHH--HHHHhccCcccccchhhchhhHH
Confidence 999999999999 3 46889999999999 9999985554332111110000 111111000 001111 35667
Q ss_pred HHHHHHHCCCc
Q 018116 332 WKTLFLDAGFT 342 (360)
Q Consensus 332 ~~~ll~~aGf~ 342 (360)
+.++++++||.
T Consensus 187 ~~~~l~~~gfp 197 (299)
T 3g5t_A 187 LRNMLKDSHLD 197 (299)
T ss_dssp HHTTTTTCCCC
T ss_pred HHHhhhccCCC
Confidence 79999999993
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-14 Score=122.19 Aligned_cols=130 Identities=14% Similarity=0.123 Sum_probs=100.4
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEEe
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYFF 259 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~ 259 (360)
.++..+. ...+..+|||||||+|.++..++ .+++++|+ +. ++++..+|+.+ +.+ .||+|++
T Consensus 57 ~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~---------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 57 RIARDLR-QRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL---------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp HHHHHHH-TSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS---------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred HHHHHHh-ccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC---------CceEEEeccccCCCCCCCEeEEEE
Confidence 3444443 13466899999999999988773 68999998 43 67889999877 444 5999999
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHC
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDA 339 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~a 339 (360)
..++|+ ++ ...+|++++++|+| ||.+++.+... ...+.++|.++++++
T Consensus 122 ~~~l~~-~~--~~~~l~~~~~~L~~---gG~l~i~~~~~--------------------------~~~~~~~~~~~l~~~ 169 (215)
T 2zfu_A 122 CLSLMG-TN--IRDFLEEANRVLKP---GGLLKVAEVSS--------------------------RFEDVRTFLRAVTKL 169 (215)
T ss_dssp ESCCCS-SC--HHHHHHHHHHHEEE---EEEEEEEECGG--------------------------GCSCHHHHHHHHHHT
T ss_pred ehhccc-cC--HHHHHHHHHHhCCC---CeEEEEEEcCC--------------------------CCCCHHHHHHHHHHC
Confidence 999984 33 46889999999999 99999986421 112789999999999
Q ss_pred CCceeEEEeeCCceeEEEEeC
Q 018116 340 GFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 340 Gf~~~~~~~~~~~~~vi~~~~ 360 (360)
||++++.....+...+++++|
T Consensus 170 Gf~~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 170 GFKIVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp TEEEEEEECCSTTCEEEEEEE
T ss_pred CCEEEEEecCCCeEEEEEEEe
Confidence 999988776666666776654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-14 Score=127.58 Aligned_cols=141 Identities=20% Similarity=0.181 Sum_probs=109.4
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-Cc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~ 254 (360)
..+++.++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.+ +.+ .|
T Consensus 110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 185 (286)
T 3m70_A 110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185 (286)
T ss_dssp HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence 34455555 457889999999999999999988 679999999 888887764 2389999999977 334 59
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..++||+++++...+|++++++|+| ||.++++.....+....+ ......++.+++.+
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~l~~ 247 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTDDVPCP---------------LPFSFTFAENELKE 247 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCS---------------SCCSCCBCTTHHHH
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCCCCCC---------------CCccccCCHHHHHH
Confidence 999999999999998889999999999999 999888776554432210 00123457788888
Q ss_pred HHHHCCCceeEEE
Q 018116 335 LFLDAGFTHYKIT 347 (360)
Q Consensus 335 ll~~aGf~~~~~~ 347 (360)
+++. |+++...
T Consensus 248 ~~~~--~~~~~~~ 258 (286)
T 3m70_A 248 YYKD--WEFLEYN 258 (286)
T ss_dssp HTTT--SEEEEEE
T ss_pred HhcC--CEEEEEE
Confidence 8855 8877764
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=124.77 Aligned_cols=150 Identities=12% Similarity=0.016 Sum_probs=107.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP--PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p--~~D~i~~~~~l 263 (360)
..+..+|||+|||+|..+..++.. ++.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 456789999999999985555544 5779999999 888887764 4679999999977 444 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc-ccCCcccCHHHHHHHHHHCCCc
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV-SVDGKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~g~~~t~~e~~~ll~~aGf~ 342 (360)
||++.++..+++++++++|+| ||.+++.+...++.............+...... ......++.+++.++|++.||.
T Consensus 100 ~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 176 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVL 176 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCce
Confidence 999878888999999999999 999999887765432110000000000000000 0112456899999999999987
Q ss_pred eeEE
Q 018116 343 HYKI 346 (360)
Q Consensus 343 ~~~~ 346 (360)
..+.
T Consensus 177 ~~~~ 180 (209)
T 2p8j_A 177 FKED 180 (209)
T ss_dssp EEEE
T ss_pred eeee
Confidence 6554
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.9e-14 Score=127.73 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=96.2
Q ss_pred CCCCEEEEeCCCCchHHH----HHHHHCCCCeE--EEeec-hHHHhcCCC-------CCCeEE--EeCCCCC-C------
Q 018116 194 EGLGSIVDVGGGNGGFSK----IISEAFPGIKC--TVLDL-PHAVANMPQ-------TENLKY--IAGDMFQ-Y------ 250 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~-------~~ri~~--~~~D~~~-~------ 250 (360)
.+..+|||||||+|.++. .++.++|+.++ +++|. +.|++.+++ ..++++ ..++... +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 356799999999997654 44556788854 99999 898886653 134544 4555432 1
Q ss_pred CC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhccc--CCcc
Q 018116 251 IP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV--DGKE 326 (360)
Q Consensus 251 ~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~--~g~~ 326 (360)
++ .||+|++++++||++|. .+.|++++++|+| ||++++.+...+. . ... .+......... ....
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~---~--~~~--~~~~~~~~~~~~~~~~~ 198 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT---NAKMLIIVVSGSS---G--WDK--LWKKYGSRFPQDDLCQY 198 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEEEECTTS---H--HHH--HHHHHGGGSCCCTTCCC
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCC---CcEEEEEEecCCc---c--HHH--HHHHHHHhccCCCcccC
Confidence 22 59999999999999986 4679999999999 9999998654211 1 111 11111100000 1245
Q ss_pred cCHHHHHHHHHHCCCceeEE
Q 018116 327 RTDEEWKTLFLDAGFTHYKI 346 (360)
Q Consensus 327 ~t~~e~~~ll~~aGf~~~~~ 346 (360)
++.++|.++|+++||+++..
T Consensus 199 ~~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 199 ITSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CCHHHHHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHHHHCCCceEEE
Confidence 68999999999999987763
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=129.65 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=100.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-----C----------------------------
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMPQ-----T---------------------------- 237 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-----~---------------------------- 237 (360)
..++.+|||||||+|.++..++.. +. +++++|+ +.+++.+++ .
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 346789999999999877655543 33 6999999 888886542 0
Q ss_pred --CCeE-EEeCCCCCC-------CCCccEEEeccccccCC--hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch
Q 018116 238 --ENLK-YIAGDMFQY-------IPPADAYFFKLVFHAFG--DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH 305 (360)
Q Consensus 238 --~ri~-~~~~D~~~~-------~p~~D~i~~~~~lh~~~--~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~ 305 (360)
.++. +..+|+.+. .+.||+|+++.+|||.. .++..++|++++++|+| ||+|++.+.........
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~~~~~~~~- 206 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPSYMV- 206 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCEEEE-
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEeecCcccee-
Confidence 1233 889999772 23699999999999853 35677899999999999 99999987543211000
Q ss_pred hhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeC
Q 018116 306 QVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVF 350 (360)
Q Consensus 306 ~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
.. ........+.+++.++|+++||+++++...+
T Consensus 207 --------g~----~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 207 --------GK----REFSCVALEKGEVEQAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp --------TT----EEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred --------CC----eEeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence 00 0011224589999999999999999887653
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.8e-15 Score=132.88 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=88.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC-C
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ-Y 250 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~-~ 250 (360)
..+...++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++.+..+|+.. +
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 122 (293)
T 3thr_A 47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 122 (293)
T ss_dssp HHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence 33444444 456789999999999999999988 559999999 888887752 2578899999876 3
Q ss_pred ---CC--CccEEEec-cccccCCh-----hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 251 ---IP--PADAYFFK-LVFHAFGD-----EDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 251 ---~p--~~D~i~~~-~~lh~~~~-----~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
++ .||+|++. +++||+++ ++..++|++++++|+| ||++++....
T Consensus 123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~ 177 (293)
T 3thr_A 123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHRN 177 (293)
T ss_dssp HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeCC
Confidence 33 59999998 89999998 7778999999999999 8999887653
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.8e-14 Score=123.03 Aligned_cols=142 Identities=18% Similarity=0.217 Sum_probs=102.7
Q ss_pred CCCCEEEEeCCCC--chHHHHH-HHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---------CCc
Q 018116 194 EGLGSIVDVGGGN--GGFSKII-SEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---------PPA 254 (360)
Q Consensus 194 ~~~~~iLDvG~G~--G~~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---------p~~ 254 (360)
.+..+|||||||+ +..+..+ .+..|+.+++++|. |.|++.+++ ..+++|+.+|+.++. ..|
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 3568999999997 4444444 44689999999999 999998874 247999999997731 125
Q ss_pred c-----EEEeccccccCChhH-HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccC
Q 018116 255 D-----AYFFKLVFHAFGDED-CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERT 328 (360)
Q Consensus 255 D-----~i~~~~~lh~~~~~~-~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t 328 (360)
| .|+++.+|||+++++ ...+|++++++|+| ||+|++.+...+..... . ....+...........||
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d~~p~~--~---~~~~~~~~~~g~p~~~rs 228 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAEFAPQE--V---GRVAREYAARNMPMRLRT 228 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCTTSHHH--H---HHHHHHHHHTTCCCCCCC
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCCCCHHH--H---HHHHHHHHhcCCCCccCC
Confidence 5 588999999999876 57899999999999 99999988776532111 1 111122111112345689
Q ss_pred HHHHHHHHHHCCCceeE
Q 018116 329 DEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~ 345 (360)
.+|+.++|. ||+.++
T Consensus 229 ~~ei~~~f~--Glelve 243 (277)
T 3giw_A 229 HAEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHHHTTT--TSEECT
T ss_pred HHHHHHHhC--CCcccC
Confidence 999999994 998544
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7e-14 Score=126.65 Aligned_cols=153 Identities=12% Similarity=-0.000 Sum_probs=109.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC-C--CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YI-P--PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~-p--~~D~i~~~ 260 (360)
..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ +. + .||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 356789999999999999998876 5569999999 888887764 2579999999987 44 2 59999999
Q ss_pred ccccc--CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCc--------ch----------hhhh-HhHhhhhhhh
Q 018116 261 LVFHA--FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKED--------KH----------QVTE-AKLLGDTLMS 319 (360)
Q Consensus 261 ~~lh~--~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~--------~~----------~~~~-~~~~~d~~~~ 319 (360)
.++|| .+.++..++|++++++|+| ||++++..+....... .. ..+. ....+.+...
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 99998 5677788999999999999 9999987754321000 00 0000 0000000000
Q ss_pred cc---cCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 320 VS---VDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 320 ~~---~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.. .....++.++|.++++++||+++++...
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 00 0123458999999999999999988765
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-14 Score=134.67 Aligned_cols=149 Identities=11% Similarity=0.052 Sum_probs=107.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC------CC--CC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ------YI--PP 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~------~~--p~ 253 (360)
..+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+......+.. +. ..
T Consensus 97 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~ 171 (416)
T 4e2x_A 97 RDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGP 171 (416)
T ss_dssp HHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCC
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCC
Confidence 45556665 567889999999999999999986 569999999 8898888753 34433322221 11 25
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
||+|++.+++||+++. ..+|++++++|+| ||++++..+.... ... ...+..........++.++|.
T Consensus 172 fD~I~~~~vl~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~------~~~---~~~~~~~~~~~~~~~s~~~l~ 237 (416)
T 4e2x_A 172 ANVIYAANTLCHIPYV--QSVLEGVDALLAP---DGVFVFEDPYLGD------IVA---KTSFDQIFDEHFFLFSATSVQ 237 (416)
T ss_dssp EEEEEEESCGGGCTTH--HHHHHHHHHHEEE---EEEEEEEEECHHH------HHH---HTCGGGCSTTCCEECCHHHHH
T ss_pred EEEEEECChHHhcCCH--HHHHHHHHHHcCC---CeEEEEEeCChHH------hhh---hcchhhhhhhhhhcCCHHHHH
Confidence 9999999999999864 6789999999999 8998886544311 000 011111111223457999999
Q ss_pred HHHHHCCCceeEEEeeC
Q 018116 334 TLFLDAGFTHYKITNVF 350 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~~ 350 (360)
++++++||+++++...+
T Consensus 238 ~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 238 GMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHTTEEEEEEEEEC
T ss_pred HHHHHcCCEEEEEEEcc
Confidence 99999999999998875
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-13 Score=111.45 Aligned_cols=119 Identities=13% Similarity=0.189 Sum_probs=97.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC--CccEEEeccccccCChh-
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIP--PADAYFFKLVFHAFGDE- 269 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~~~~~- 269 (360)
.+..+|||+|||+|.++..+++.. +++++|+ +.+++. .++++++.+|+.++.+ .||+|+++..+|+.++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 456799999999999999999886 9999999 889888 6789999999988654 59999998888865543
Q ss_pred ------HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCce
Q 018116 270 ------DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 270 ------~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
+...+++++.+.+ | ||++++.+... ...+++.++++++||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~----------------------------~~~~~l~~~l~~~gf~~ 143 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA----------------------------NRPKEVLARLEERGYGT 143 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG----------------------------GCHHHHHHHHHHTTCEE
T ss_pred cccCCcchHHHHHHHHhhC-C---CCEEEEEEecC----------------------------CCHHHHHHHHHHCCCcE
Confidence 3457889999988 8 99998866321 14678889999999998
Q ss_pred eEEEeeC
Q 018116 344 YKITNVF 350 (360)
Q Consensus 344 ~~~~~~~ 350 (360)
+.+....
T Consensus 144 ~~~~~~~ 150 (170)
T 3q87_B 144 RILKVRK 150 (170)
T ss_dssp EEEEEEE
T ss_pred EEEEeec
Confidence 8887663
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=118.02 Aligned_cols=131 Identities=10% Similarity=0.091 Sum_probs=104.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-CccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP-PADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p-~~D~i~~~~~lh 264 (360)
..+..+|||||||+|.++..+++ .+..+++++|+ +.+++.+++ ..++++..+|+....+ .||+|++...+|
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 35678999999999999999776 56779999999 888887764 2349999999987444 699999987776
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCcee
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHY 344 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 344 (360)
+ ...++++++++|+| ||++++.+.... +.+++.++++++||+.+
T Consensus 137 ~-----~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~ 180 (205)
T 3grz_A 137 I-----LLDLIPQLDSHLNE---DGQVIFSGIDYL----------------------------QLPKIEQALAENSFQID 180 (205)
T ss_dssp H-----HHHHGGGSGGGEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEE
T ss_pred H-----HHHHHHHHHHhcCC---CCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceE
Confidence 4 35789999999999 899988654321 45788899999999999
Q ss_pred EEEeeCCceeEEEEeC
Q 018116 345 KITNVFGLKSLIEVYP 360 (360)
Q Consensus 345 ~~~~~~~~~~vi~~~~ 360 (360)
++....+..+++.-+|
T Consensus 181 ~~~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 181 LKMRAGRWIGLAISRK 196 (205)
T ss_dssp EEEEETTEEEEEEEEC
T ss_pred EeeccCCEEEEEEecc
Confidence 9888777766665443
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-13 Score=117.44 Aligned_cols=97 Identities=21% Similarity=0.294 Sum_probs=81.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CccEEEec-ccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PADAYFFK-LVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D~i~~~-~~l 263 (360)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++. ..+
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI 116 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCch
Confidence 346689999999999999999986 679999999 888887763 3479999999977 444 59999986 466
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
++++.++..++|++++++|+| ||.+++.
T Consensus 117 ~~~~~~~~~~~l~~~~~~L~p---gG~li~~ 144 (252)
T 1wzn_A 117 MYFDEEDLRKLFSKVAEALKP---GGVFITD 144 (252)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence 777878889999999999999 8887764
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.2e-13 Score=114.84 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=99.1
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CCC
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---IPP 253 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~p~ 253 (360)
.++..+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.
T Consensus 31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 3445555 66788999999999999999999999999999999 988888764 37899999999763 246
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
||+|++...++ +..++++++.++|+| ||++++..... .+.+++.
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~~~~~----------------------------~~~~~~~ 152 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLNAVTL----------------------------DTLTKAV 152 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEEECBH----------------------------HHHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEEeccc----------------------------ccHHHHH
Confidence 99999988775 345789999999999 99998854321 0356778
Q ss_pred HHHHHCCCceeEE
Q 018116 334 TLFLDAGFTHYKI 346 (360)
Q Consensus 334 ~ll~~aGf~~~~~ 346 (360)
++++++|| .+++
T Consensus 153 ~~l~~~g~-~~~~ 164 (204)
T 3e05_A 153 EFLEDHGY-MVEV 164 (204)
T ss_dssp HHHHHTTC-EEEE
T ss_pred HHHHHCCC-ceeE
Confidence 88999998 4433
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=4.2e-14 Score=127.95 Aligned_cols=139 Identities=15% Similarity=0.212 Sum_probs=98.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CC---------------------------------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TE--------------------------------- 238 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~--------------------------------- 238 (360)
+..+|||||||+|.++. ++...+..+++++|+ +.+++.+++ ..
T Consensus 71 ~~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 56899999999999543 444445679999999 888876542 00
Q ss_pred -CeEEEeCCCCC--C-----CC--CccEEEeccccccCChh--HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchh
Q 018116 239 -NLKYIAGDMFQ--Y-----IP--PADAYFFKLVFHAFGDE--DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQ 306 (360)
Q Consensus 239 -ri~~~~~D~~~--~-----~p--~~D~i~~~~~lh~~~~~--~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~ 306 (360)
.++++.+|+.+ + .+ .||+|++..++|+++++ +..++|++++++|+| ||+|++.+........
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~~~~~~~~--- 223 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESWYL--- 223 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCEEE---
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCcceEE---
Confidence 14567778876 2 22 29999999999996543 667899999999999 9999997643211000
Q ss_pred hhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeC
Q 018116 307 VTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVF 350 (360)
Q Consensus 307 ~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
..+ .......++.++|.++|+++||+++++...+
T Consensus 224 ------~~~----~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 224 ------AGE----ARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp ------ETT----EEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ------cCC----eeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 000 0001234689999999999999998876553
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=116.03 Aligned_cols=133 Identities=11% Similarity=0.085 Sum_probs=101.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CccEEEecccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP--PADAYFFKLVFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~ 265 (360)
+. +|||||||+|.++..+++. +.+++++|. +.+++.+++ ..++++..+|+.+ +.+ .||+|++. ++|
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCH 104 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCC
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhc
Confidence 44 9999999999999999986 679999999 888887764 3489999999987 444 59999984 455
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
++.++..++|++++++|+| ||.+++.+........ ... ........++.+++.++|+ ||++++
T Consensus 105 ~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~l~~~l~--Gf~v~~ 167 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKP---GGVFILEGFAPEQLQY-----------NTG-GPKDLDLLPKLETLQSELP--SLNWLI 167 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCS---SEEEEEEEECTTTGGG-----------TSC-CSSSGGGCCCHHHHHHHCS--SSCEEE
T ss_pred CCHHHHHHHHHHHHHhcCC---CcEEEEEEeccccccC-----------CCC-CCCcceeecCHHHHHHHhc--CceEEE
Confidence 6777788999999999999 9999998775433110 000 0001123569999999999 999988
Q ss_pred EEee
Q 018116 346 ITNV 349 (360)
Q Consensus 346 ~~~~ 349 (360)
+...
T Consensus 168 ~~~~ 171 (202)
T 2kw5_A 168 ANNL 171 (202)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7655
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=118.45 Aligned_cols=147 Identities=13% Similarity=0.093 Sum_probs=97.4
Q ss_pred HHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhc----CCC------CCCeEEEeCCCCC-CCC-
Q 018116 186 KDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVAN----MPQ------TENLKYIAGDMFQ-YIP- 252 (360)
Q Consensus 186 ~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~ri~~~~~D~~~-~~p- 252 (360)
+..+. ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++.+|+.+ +.+
T Consensus 20 ~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 97 (218)
T 3mq2_A 20 FEQLR--SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLS 97 (218)
T ss_dssp HHHHH--TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCC
T ss_pred HHHhh--ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCC
Confidence 34444 56778999999999999999999999999999999 886664 221 4589999999987 443
Q ss_pred CccEEEec---ccc--ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCccc
Q 018116 253 PADAYFFK---LVF--HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKER 327 (360)
Q Consensus 253 ~~D~i~~~---~~l--h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~ 327 (360)
+.|.|++. ..+ ||+++. ..+|++++++|+| ||++++......-.... ..+... .......
T Consensus 98 ~~d~v~~~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~---------~~~~~~-~~~~~~~ 162 (218)
T 3mq2_A 98 GVGELHVLMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVALNLHAWRPSV---------PEVGEH-PEPTPDS 162 (218)
T ss_dssp CEEEEEEESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEEEEGGGBTTBC---------GGGTTC-CCCCHHH
T ss_pred CCCEEEEEccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEEeccccccccc---------cccccC-CccchHH
Confidence 23665522 222 244443 5789999999999 89888843221111100 000000 0001112
Q ss_pred CHHHHHHHHHHCCCceeEEEee
Q 018116 328 TDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
..+++.++++++||++.++..+
T Consensus 163 ~~~~l~~~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 163 ADEWLAPRYAEAGWKLADCRYL 184 (218)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCceeeecc
Confidence 3456888999999999888765
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=118.70 Aligned_cols=140 Identities=14% Similarity=0.187 Sum_probs=101.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcC----CCCCCeEEEeCCCCCC-----C-CCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANM----PQTENLKYIAGDMFQY-----I-PPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~ri~~~~~D~~~~-----~-p~~D~i~~~~ 261 (360)
..+..+|||||||+|.++..+++.++..+++++|+ +.+++.+ +..+++.++.+|+..+ . ..||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 45678999999999999999999988789999999 8877654 3357899999998761 2 2599998
Q ss_pred ccccCChh-HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 262 VFHAFGDE-DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 262 ~lh~~~~~-~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
|+++++ ....+|+++.+.|+| ||++++. .......... . . .....+++. +|+++|
T Consensus 149 --~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~---~---~-----------~~~~~~~l~-~l~~~G 204 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKK---GGYGMIA-IKARSIDVTK---D---P-----------KEIFKEQKE-ILEAGG 204 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSS---C---H-----------HHHHHHHHH-HHHHHT
T ss_pred --EecCChhHHHHHHHHHHHhCCC---CcEEEEE-EecCCCCCCC---C---H-----------HHhhHHHHH-HHHHCC
Confidence 555543 345679999999999 8999886 2211111100 0 0 001236777 899999
Q ss_pred CceeEEEeeCCc---eeEEEEe
Q 018116 341 FTHYKITNVFGL---KSLIEVY 359 (360)
Q Consensus 341 f~~~~~~~~~~~---~~vi~~~ 359 (360)
|+.+++.++..+ ..++.++
T Consensus 205 f~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 205 FKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp EEEEEEEECTTTSTTEEEEEEE
T ss_pred CEEEEEEccCCCccceEEEEEE
Confidence 999999887554 5666654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.1e-13 Score=118.33 Aligned_cols=135 Identities=18% Similarity=0.207 Sum_probs=105.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC--CCccEEEec----
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI--PPADAYFFK---- 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~--p~~D~i~~~---- 260 (360)
.+..+|||+|||+|..+..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.++. ..||+|+++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 3567999999999999999999999999999999 888887764 247999999998854 359999997
Q ss_pred ---------cccccCCh----------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc
Q 018116 261 ---------LVFHAFGD----------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS 321 (360)
Q Consensus 261 ---------~~lh~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 321 (360)
.+++|.|. +...++++++.+.|+| ||.+++...
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~~~------------------------- 239 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLEHG------------------------- 239 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEECC-------------------------
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEEC-------------------------
Confidence 34444432 3457899999999999 888877310
Q ss_pred cCCcccCHHHHHHHHHHCCCceeEEEe-eCCceeEEEEeC
Q 018116 322 VDGKERTDEEWKTLFLDAGFTHYKITN-VFGLKSLIEVYP 360 (360)
Q Consensus 322 ~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 360 (360)
..+.+++.++++++||+.+++.. ..+...++.+++
T Consensus 240 ----~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ----WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ----SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ----chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 11467889999999999777654 466666777653
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=117.71 Aligned_cols=100 Identities=17% Similarity=0.276 Sum_probs=84.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCCC--CccEEEecccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQYIP--PADAYFFKLVFHA 265 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~ 265 (360)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+..+ .||+|++.+++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4567899999999999999999884 58999999 888877653 4589999999987323 5999999999999
Q ss_pred CCh-hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 266 FGD-EDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 266 ~~~-~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+++ +...++|++++++|+| ||.+++....
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCEEEEEecC
Confidence 996 5566899999999999 8998886653
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-13 Score=115.81 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=95.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CccEEEeccccccCCh
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGD 268 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~ 268 (360)
+..+|||||||+|.++..+ +. +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.+++||+++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 6789999999999998877 45 8999999 888887765 4689999999977 444 5999999999999986
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhh-hhhcccCCcccCHHHHHHHHHHCC
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDT-LMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
. .++|++++++|+| ||++++.+...... .......... ........+.++.++++++|+ |
T Consensus 111 ~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 111 V--ERVLLEARRVLRP---GGALVVGVLEALSP-----WAALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp H--HHHHHHHHHHEEE---EEEEEEEEECTTSH-----HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred H--HHHHHHHHHHcCC---CCEEEEEecCCcCc-----HHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 4 5789999999999 99999987644321 0000000000 000001235579999999998 7
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-13 Score=117.80 Aligned_cols=146 Identities=10% Similarity=0.054 Sum_probs=92.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hH-HHhcC---CC------CCCeEEEeCCCCCC-CCCccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PH-AVANM---PQ------TENLKYIAGDMFQY-IPPADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~-~~~~a---~~------~~ri~~~~~D~~~~-~p~~D~i~~~~ 261 (360)
.+..+|||||||+|.++..++++.|+.+++++|+ +. +++.| ++ ..++.|+.+|+..- ...+|.|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 5678999999999999999999899999999999 34 44443 43 35799999998663 11246555544
Q ss_pred ccccCChh------HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHH
Q 018116 262 VFHAFGDE------DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTL 335 (360)
Q Consensus 262 ~lh~~~~~------~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~l 335 (360)
+.+.|+.. +...+|++++++|+| ||++++...........+ . ....... ........+++.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~~-~----~~~~~~~---~~~~~~~~~el~~~ 171 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVTTYSDSYEEAE-I----KKRGLPL---LSKAYFLSEQYKAE 171 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEECCCC----------------------CCHHHHHSHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEEeccccchhch-h----hhcCCCC---CChhhcchHHHHHH
Confidence 44434331 113579999999999 999988544333211000 0 0000000 00001122359999
Q ss_pred HHHCCCceeEEEeeC
Q 018116 336 FLDAGFTHYKITNVF 350 (360)
Q Consensus 336 l~~aGf~~~~~~~~~ 350 (360)
++++||.+.++....
T Consensus 172 l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 172 LSNSGFRIDDVKELD 186 (225)
T ss_dssp HHHHTCEEEEEEEEC
T ss_pred HHHcCCCeeeeeecC
Confidence 999999988876653
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.9e-13 Score=119.39 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=80.9
Q ss_pred CCCEEEEeCCCCch----HHHHHHHHCC----CCeEEEeec-hHHHhcCCCC----------------------------
Q 018116 195 GLGSIVDVGGGNGG----FSKIISEAFP----GIKCTVLDL-PHAVANMPQT---------------------------- 237 (360)
Q Consensus 195 ~~~~iLDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 237 (360)
+..+|+|+|||+|. +++.+++.++ +.+++++|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666777655 468999999 9998876531
Q ss_pred ---------CCeEEEeCCCCC-CCC---CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 238 ---------ENLKYIAGDMFQ-YIP---PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 238 ---------~ri~~~~~D~~~-~~p---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.+|.|..+|+.+ +++ .||+|+|.++++|++++...+++++++++|+| ||.|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 269999999988 454 59999999999999998889999999999999 888776
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-12 Score=128.43 Aligned_cols=101 Identities=12% Similarity=0.152 Sum_probs=86.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------------CCCeEEEeCCCCC-CCC--Ccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------------TENLKYIAGDMFQ-YIP--PAD 255 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~ri~~~~~D~~~-~~p--~~D 255 (360)
..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ ..+++|+.+|+.+ +.+ .||
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD 798 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD 798 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence 4578899999999999999999987 5679999999 888887743 3579999999987 443 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+|++..++||++++....++++++++|+| | .++|..+.
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTPN 836 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTPN 836 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEECB
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEecC
Confidence 99999999999999888899999999999 6 66666543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=108.63 Aligned_cols=140 Identities=14% Similarity=0.251 Sum_probs=105.4
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC--CeEEEeCCCCCCCC--
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TE--NLKYIAGDMFQYIP-- 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~--ri~~~~~D~~~~~p-- 252 (360)
.+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .. |++++.+|+.+..+
T Consensus 43 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 43 ILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 3444444 457789999999999999999988 789999999 888877663 23 59999999987543
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
.||+|++...+|+ ..+....++++++++|+| ||.+++...... ...++
T Consensus 119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~ 166 (194)
T 1dus_A 119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKD---NGEIWVVIQTKQ----------------------------GAKSL 166 (194)
T ss_dssp CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEE---EEEEEEEEESTH----------------------------HHHHH
T ss_pred CceEEEECCCccc-chhHHHHHHHHHHHHcCC---CCEEEEEECCCC----------------------------ChHHH
Confidence 5999999887774 455667899999999999 899988764321 12346
Q ss_pred HHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 333 KTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
.+.+++. |..+++........++.++|
T Consensus 167 ~~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 167 AKYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHHH-hcceEEEecCCcEEEEEEee
Confidence 6667776 66666776666667776654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-13 Score=123.84 Aligned_cols=112 Identities=12% Similarity=0.045 Sum_probs=90.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEeCC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---------------TENLKYIAGD 246 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~ri~~~~~D 246 (360)
..++..+. ..+..+|||||||+|.++..++..++..+++|+|+ +.+++.|++ .++|+|+.+|
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34555555 67889999999999999999999887667999999 777665542 3789999999
Q ss_pred CCC-CC----CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 018116 247 MFQ-YI----PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKE 302 (360)
Q Consensus 247 ~~~-~~----p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~ 302 (360)
+.+ ++ +.+|+|+++++++ + ++..+.|+++.+.|+| ||+|++.|.+.+...
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCT---TCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCC---CcEEEEeecccCCCC
Confidence 988 43 3699999987764 2 3456778999999999 999999999888654
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-13 Score=116.62 Aligned_cols=135 Identities=19% Similarity=0.218 Sum_probs=87.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC--C-----CCccEEEec
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQY--I-----PPADAYFFK 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~--~-----p~~D~i~~~ 260 (360)
.+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.++ . ..||+|++.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 5678999999999999999999999999999999 999988875 11688889988763 2 469999995
Q ss_pred ccc------ccCChhHH------------------HHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhh
Q 018116 261 LVF------HAFGDEDC------------------LKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDT 316 (360)
Q Consensus 261 ~~l------h~~~~~~~------------------~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~ 316 (360)
..+ ++++++.. .+++++++++|+| ||++++++..
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~------------------- 166 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEVG------------------- 166 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEECT-------------------
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEEC-------------------
Confidence 443 33333222 6789999999999 9996665431
Q ss_pred hhhcccCCcccCHHHHHHHHH--HCCCceeEEEee-CCceeEEEEe
Q 018116 317 LMSVSVDGKERTDEEWKTLFL--DAGFTHYKITNV-FGLKSLIEVY 359 (360)
Q Consensus 317 ~~~~~~~g~~~t~~e~~~ll~--~aGf~~~~~~~~-~~~~~vi~~~ 359 (360)
....+++.++++ ++||..+++... .+...++.++
T Consensus 167 ---------~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~ 203 (215)
T 4dzr_A 167 ---------HNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVT 203 (215)
T ss_dssp ---------TSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred ---------CccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence 113466778888 889987777665 3344455443
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-12 Score=109.13 Aligned_cols=137 Identities=13% Similarity=0.117 Sum_probs=95.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHH----hcCCCCCCeEEEeCCCCCC-----CC-CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAV----ANMPQTENLKYIAGDMFQY-----IP-PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~----~~a~~~~ri~~~~~D~~~~-----~p-~~D~i~~~~ 261 (360)
..++.+|||||||+|.++..+++..+..+++++|+ +.++ +.++...++.++.+|+..+ .+ .||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45678999999999999999999988779999999 7654 3343356799999998662 22 59999986
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH----HHHHH
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW----KTLFL 337 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~----~~ll~ 337 (360)
+.+ .++...++++++++|+| ||++++.-...+ .+ ...+.+++ .+.++
T Consensus 134 ~~~---~~~~~~~l~~~~r~Lkp---gG~l~i~~~~~~--------------~~---------~~~~~~~~~~~~~~~l~ 184 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKE---KGEVVIMVKARS--------------ID---------STAEPEEVFKSVLKEME 184 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHH--------------HC---------TTSCHHHHHHHHHHHHH
T ss_pred ccC---hhHHHHHHHHHHHHhCC---CCEEEEEEecCC--------------cc---------ccCCHHHHHHHHHHHHH
Confidence 322 23344569999999999 999988732210 00 01122332 12378
Q ss_pred HCCCceeEEEeeCC---ceeEEEEeC
Q 018116 338 DAGFTHYKITNVFG---LKSLIEVYP 360 (360)
Q Consensus 338 ~aGf~~~~~~~~~~---~~~vi~~~~ 360 (360)
++ |++++...... .+.++.++|
T Consensus 185 ~~-f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 185 GD-FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp TT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred hh-cEEeeeecCCCCCCCcEEEEEEc
Confidence 88 99999988833 566777664
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=111.90 Aligned_cols=141 Identities=12% Similarity=0.107 Sum_probs=100.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCC----CCCCeEEEeCCCCCC--C----CCccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMP----QTENLKYIAGDMFQY--I----PPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~----~~~ri~~~~~D~~~~--~----p~~D~i~~~ 260 (360)
++++.+|||+|||+|.++..+++. .|.-+++++|+ +.+++.++ +..++..+.+|...+ . ..+|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 688999999999999999999987 48899999999 88887654 357899999988662 1 248988753
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
+++.. +...+++++++.||| ||+++|........... ......++-.+.|+++|
T Consensus 155 --~~~~~--~~~~~l~~~~r~LKp---GG~lvI~ik~r~~d~~~-------------------p~~~~~~~ev~~L~~~G 208 (233)
T 4df3_A 155 --VAQPE--QAAIVVRNARFFLRD---GGYMLMAIKARSIDVTT-------------------EPSEVYKREIKTLMDGG 208 (233)
T ss_dssp --CCCTT--HHHHHHHHHHHHEEE---EEEEEEEEECCHHHHHT-------------------CCCHHHHHHHHHHHHTT
T ss_pred --ccCCh--hHHHHHHHHHHhccC---CCEEEEEEecccCCCCC-------------------ChHHHHHHHHHHHHHCC
Confidence 22222 345789999999999 99998865332111000 00001234456788999
Q ss_pred CceeEEEeeCC---ceeEEEEe
Q 018116 341 FTHYKITNVFG---LKSLIEVY 359 (360)
Q Consensus 341 f~~~~~~~~~~---~~~vi~~~ 359 (360)
|+.++...+.. .+.++.++
T Consensus 209 F~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 209 LEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp CCEEEEEECTTTSTTEEEEEEC
T ss_pred CEEEEEEccCCCCCceEEEEEE
Confidence 99999988844 35666554
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=115.06 Aligned_cols=106 Identities=12% Similarity=0.029 Sum_probs=82.4
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC----C-CCC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ----Y-IPP 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~----~-~p~ 253 (360)
..++..++ ..+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++ ...+.....++.. . ...
T Consensus 35 ~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 35 ENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 34455555 667889999999999999999987 679999999 999988764 2223333333321 1 126
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
||+|++..++||++.++...++++++++| | ||++++...
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~ 149 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVK 149 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEE
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEec
Confidence 99999999999999988899999999999 9 999998754
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=108.68 Aligned_cols=100 Identities=10% Similarity=0.178 Sum_probs=81.5
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC----C
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYI----P 252 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~----p 252 (360)
++..+. ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++ ++.+|..+.+ +
T Consensus 17 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 17 AISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 344444 56778999999999999999999999999999999 888887763 3378 8889886632 4
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.||+|++...+|+ .++++++.+.|+| ||++++.+.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~~~ 128 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVANAV 128 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEEEC
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEEee
Confidence 6999999999986 4679999999999 999988664
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=111.39 Aligned_cols=102 Identities=19% Similarity=0.181 Sum_probs=85.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--CccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh 264 (360)
..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++..+++
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 356789999999999999999988554 8999999 888877654 3689999999977 444 599999999988
Q ss_pred cCC-------------hhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 265 AFG-------------DEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 265 ~~~-------------~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
++. .++..++|++++++|+| ||++++.+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~ 162 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSAA 162 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCCC
Confidence 765 44667899999999999 99999987543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-13 Score=121.26 Aligned_cols=96 Identities=13% Similarity=0.071 Sum_probs=75.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC---CCC--CccEEEe---
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ---YIP--PADAYFF--- 259 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~---~~p--~~D~i~~--- 259 (360)
.++.+|||||||+|..+..+++..| .+++++|+ |.+++.+++ ..++.++.+|... +.+ .||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 5678999999999999999988766 48999999 999988764 5678888888744 334 4998864
Q ss_pred --ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 260 --KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 260 --~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
...++|+++ ...++++++|+||| ||+|++++
T Consensus 138 ~~~~~~~~~~~--~~~~~~e~~rvLkP---GG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHTHQ--FNFIKNHAFRLLKP---GGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHH--HHHHHHTHHHHEEE---EEEEEECC
T ss_pred ecccchhhhcc--hhhhhhhhhheeCC---CCEEEEEe
Confidence 445555554 46789999999999 89887754
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-13 Score=119.95 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=96.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC----CCC-----CccEE
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ----YIP-----PADAY 257 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~----~~p-----~~D~i 257 (360)
+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 567999999999999999999988899999999 999887764 3579999999533 333 59999
Q ss_pred EeccccccCCh-------------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCC
Q 018116 258 FFKLVFHAFGD-------------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDG 324 (360)
Q Consensus 258 ~~~~~lh~~~~-------------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g 324 (360)
++.-..|+... +....++.+++++|+| ||++.+++.+... ...............+
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~~~~~~--------~~~~l~~~g~~~~~~~ 213 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVKRIIHD--------SLQLKKRLRWYSCMLG 213 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH---HTHHHHHHHHHHH--------HHHHGGGBSCEEEEES
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEHHHHHH--------HHhcccceEEEEECCC
Confidence 99866654431 1123567889999999 8988776543211 0000111111111123
Q ss_pred cccCHHHHHHHHHHCCCceeEEEee
Q 018116 325 KERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
...+.+++.++++++||+.+++...
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEE
Confidence 4445689999999999999888776
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.2e-12 Score=109.52 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=96.2
Q ss_pred cCCCCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCC--CCCC--CccEEEecc
Q 018116 193 FEGLGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMF--QYIP--PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~--~~~p--~~D~i~~~~ 261 (360)
..+..+|||+||| +|.++..+++.. +.+++++|+ +.+++.+++ ..+++++.+|+. .+.+ .||+|++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4578899999999 999999999986 789999999 888887764 238999999963 3443 599999887
Q ss_pred ccccCChhH-----------------HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCC
Q 018116 262 VFHAFGDED-----------------CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDG 324 (360)
Q Consensus 262 ~lh~~~~~~-----------------~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g 324 (360)
.+++.++.+ ..++++++.+.|+| ||++++.....
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~-------------------------- 182 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLPDK-------------------------- 182 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEESC--------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEeccc--------------------------
Confidence 766544322 36789999999999 99998853210
Q ss_pred cccCHHHHHHHHHHCCCceeEEEeeCC
Q 018116 325 KERTDEEWKTLFLDAGFTHYKITNVFG 351 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~~ 351 (360)
....+++.+++++.||.+..+....+
T Consensus 183 -~~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 183 -EKLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp -HHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred -HhHHHHHHHHHHHcCCceEEEEecCC
Confidence 01346788999999998777655544
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.5e-12 Score=108.38 Aligned_cols=130 Identities=11% Similarity=0.117 Sum_probs=101.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP---PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p---~~D~i~~~~ 261 (360)
..++.+|+|||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|+++.+|.++.++ .||+|++..
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 34678999999999999999999999899999999 888888764 4689999999988654 499998765
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
+ ..+-...+|..+.+.|+| +|++++.- . ......+++|.+.||
T Consensus 93 ~----Gg~~i~~Il~~~~~~L~~---~~~lVlq~-~-----------------------------~~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 93 M----GGRLIARILEEGLGKLAN---VERLILQP-N-----------------------------NREDDLRIWLQDHGF 135 (225)
T ss_dssp E----CHHHHHHHHHHTGGGCTT---CCEEEEEE-S-----------------------------SCHHHHHHHHHHTTE
T ss_pred C----ChHHHHHHHHHHHHHhCC---CCEEEEEC-C-----------------------------CCHHHHHHHHHHCCC
Confidence 4 344567899999999999 88877721 1 135677889999999
Q ss_pred ceeEEEee--CC-ceeEEEEe
Q 018116 342 THYKITNV--FG-LKSLIEVY 359 (360)
Q Consensus 342 ~~~~~~~~--~~-~~~vi~~~ 359 (360)
.+++-.-+ .+ ++.+|.+.
T Consensus 136 ~i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 136 QIVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 98876544 23 34465554
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-12 Score=110.71 Aligned_cols=139 Identities=9% Similarity=0.073 Sum_probs=95.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHh----cCCCCCCeEEEeCCCCCC--C----CCccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVA----NMPQTENLKYIAGDMFQY--I----PPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~ri~~~~~D~~~~--~----p~~D~i~~~ 260 (360)
+.+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++ .++...+++++.+|+.+. . ..||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 4567899999999999999999986 7789999999 66544 333357899999999872 1 259999984
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC-CCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE-KEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDA 339 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~-~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~a 339 (360)
.. ..+....++++++++|+| ||.+++. ..... ..... .. . ... .+ .++|+++
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~---~~-~-------------~~~-~~-~~~l~~~ 207 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRN---GGHFVIS-IKANCIDSTAS---AE-A-------------VFA-SE-VKKMQQE 207 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEE---EEEEEEE-EEHHHHCSSSC---HH-H-------------HHH-HH-HHTTGGG
T ss_pred CC----CccHHHHHHHHHHHHcCC---CeEEEEE-EcccccccCCC---HH-H-------------HHH-HH-HHHHHHC
Confidence 43 233445678999999999 8888883 22110 00000 00 0 001 23 5888999
Q ss_pred CCceeEEEeeCCc---eeEEEE
Q 018116 340 GFTHYKITNVFGL---KSLIEV 358 (360)
Q Consensus 340 Gf~~~~~~~~~~~---~~vi~~ 358 (360)
||+++++..+..+ ..++.+
T Consensus 208 Gf~~~~~~~~~~~~~~~~~v~~ 229 (233)
T 2ipx_A 208 NMKPQEQLTLEPYERDHAVVVG 229 (233)
T ss_dssp TEEEEEEEECTTTSSSEEEEEE
T ss_pred CCceEEEEecCCccCCcEEEEE
Confidence 9999987776432 555544
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-12 Score=107.25 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=91.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--CC-C-CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ--YI-P-PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~--~~-p-~~D~i~~~~ 261 (360)
..++.+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ .++++++..|+.. .. + .||+|++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999987 789999999 999988764 2789999977654 12 3 599998763
Q ss_pred -ccccC------ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 262 -VFHAF------GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 262 -~lh~~------~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
.+++- ..+...++|+++.++|+| ||++++........... . .....+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~----~----------------~~~~~~~~~ 154 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYYGHDGGDM----E----------------KDAVLEYVI 154 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC------CH----H----------------HHHHHHHHH
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeCCCCCCHH----H----------------HHHHHHHHH
Confidence 22210 224566889999999999 99998876543222111 0 002344555
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
.+...+|.+.....+
T Consensus 155 ~l~~~~~~~~~~~~~ 169 (185)
T 3mti_A 155 GLDQRVFTAMLYQPL 169 (185)
T ss_dssp HSCTTTEEEEEEEES
T ss_pred hCCCceEEEEEehhh
Confidence 556667888777666
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.6e-13 Score=116.38 Aligned_cols=100 Identities=12% Similarity=0.104 Sum_probs=78.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC---CCC--CccEEEe-cc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ---YIP--PADAYFF-KL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~---~~p--~~D~i~~-~~ 261 (360)
.+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 467899999999999999996643 348999999 899887764 4679999999865 344 5999998 55
Q ss_pred c--cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 262 V--FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 262 ~--lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
. .+++.......++++++++|+| ||++++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence 5 3344444556789999999999 9999887643
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.8e-12 Score=114.26 Aligned_cols=100 Identities=19% Similarity=0.163 Sum_probs=82.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCC-C----C--C
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------------TENLKYIAGDMFQ-Y----I--P 252 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~ri~~~~~D~~~-~----~--p 252 (360)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ + + +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 46789999999999999999874 6789999999 888877653 2379999999976 3 3 2
Q ss_pred --CccEEEeccccccC--ChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 253 --PADAYFFKLVFHAF--GDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 253 --~~D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
.||+|++..++|+. +.++...+|++++++|+| ||.+++..+.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~ 157 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTPN 157 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEEC
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecCC
Confidence 59999999999987 445677999999999999 8998887664
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=105.94 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=93.6
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CCC
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---IPP 253 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~p~ 253 (360)
++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+. .+.
T Consensus 47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 444455 567789999999999999999988 789999999 888887764 23899999999872 347
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
||+|++...+ + .. +++++.++|+| ||++++..... .+..++.
T Consensus 123 ~D~v~~~~~~----~--~~-~l~~~~~~Lkp---gG~lv~~~~~~----------------------------~~~~~~~ 164 (204)
T 3njr_A 123 PEAVFIGGGG----S--QA-LYDRLWEWLAP---GTRIVANAVTL----------------------------ESETLLT 164 (204)
T ss_dssp CSEEEECSCC----C--HH-HHHHHHHHSCT---TCEEEEEECSH----------------------------HHHHHHH
T ss_pred CCEEEECCcc----c--HH-HHHHHHHhcCC---CcEEEEEecCc----------------------------ccHHHHH
Confidence 9999987644 1 23 89999999999 99988854321 0345677
Q ss_pred HHHHHCCCceeEEE
Q 018116 334 TLFLDAGFTHYKIT 347 (360)
Q Consensus 334 ~ll~~aGf~~~~~~ 347 (360)
+++++.||++.++.
T Consensus 165 ~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 165 QLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHCSEEEEEE
T ss_pred HHHHhCCCcEEEEE
Confidence 78888898776653
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-12 Score=112.63 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=93.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC-----CCccEEEec
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YI-----PPADAYFFK 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~-----p~~D~i~~~ 260 (360)
.+..+|||||||+|..+..++...|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +. ..||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4678999999999999999999889999999999 888887763 3469999999865 32 259999987
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
.+ .+ ...+++.+.++|+| ||.+++..... .. ....++.+.+++.|
T Consensus 149 ~~----~~--~~~~l~~~~~~Lkp---gG~l~~~~g~~----~~----------------------~~~~~~~~~l~~~g 193 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKK---NGLFVALKAAS----AE----------------------EELNAGKKAITTLG 193 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEE---EEEEEEEECC-----CH----------------------HHHHHHHHHHHHTT
T ss_pred cc----CC--HHHHHHHHHHhcCC---CCEEEEEeCCC----ch----------------------HHHHHHHHHHHHcC
Confidence 63 22 46789999999999 89988753111 00 01346778899999
Q ss_pred CceeEEEee
Q 018116 341 FTHYKITNV 349 (360)
Q Consensus 341 f~~~~~~~~ 349 (360)
|.+.++...
T Consensus 194 ~~~~~~~~~ 202 (240)
T 1xdz_A 194 GELENIHSF 202 (240)
T ss_dssp EEEEEEEEE
T ss_pred CeEeEEEEE
Confidence 998877654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=105.91 Aligned_cols=99 Identities=15% Similarity=0.207 Sum_probs=79.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC--CccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IP--PADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p--~~D~i~~~~ 261 (360)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++.++.+|+.+ + ++ .||+|++..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 3567999999999999999999999999999999 888887764 3689999999976 3 33 499999876
Q ss_pred ccccCChh------HHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 262 VFHAFGDE------DCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 262 ~lh~~~~~------~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
...+.... ....++++++++|+| ||.+++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 156 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 156 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCC---CcEEEEEe
Confidence 54322111 124689999999999 89988753
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=106.61 Aligned_cols=130 Identities=8% Similarity=0.013 Sum_probs=102.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-C--CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYI-P--PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~-p--~~D~i~~~~ 261 (360)
..++.+|+|||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|+++.+|.++.. + .||+|++.+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 35678999999999999999999988889999999 888888774 568999999998853 3 599998766
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
+ .-+-...+|....+.|++ +|+|++.-. ...+.++++|.+.||
T Consensus 99 m----Gg~lI~~IL~~~~~~l~~---~~~lIlqp~------------------------------~~~~~lr~~L~~~Gf 141 (230)
T 3lec_A 99 M----GGRLIADILNNDIDKLQH---VKTLVLQPN------------------------------NREDDLRKWLAANDF 141 (230)
T ss_dssp E----CHHHHHHHHHHTGGGGTT---CCEEEEEES------------------------------SCHHHHHHHHHHTTE
T ss_pred C----chHHHHHHHHHHHHHhCc---CCEEEEECC------------------------------CChHHHHHHHHHCCC
Confidence 4 345577899999999998 888777221 136788899999999
Q ss_pred ceeEEEee---CCceeEEEEe
Q 018116 342 THYKITNV---FGLKSLIEVY 359 (360)
Q Consensus 342 ~~~~~~~~---~~~~~vi~~~ 359 (360)
.+++-.-+ .-++.+|.+.
T Consensus 142 ~i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 142 EIVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEEEEC--CEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 98886654 2244466654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=112.77 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=89.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC--CCC---CccEEEeccccccC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ--YIP---PADAYFFKLVFHAF 266 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~--~~p---~~D~i~~~~~lh~~ 266 (360)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 56789999999999999999998 679999999 999888765 6789999999965 333 599999861
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEE
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKI 346 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
+..++|++++++|+| ||+++.. +...+.+++.++++++||....+
T Consensus 120 ---~~~~~l~~~~~~Lkp---gG~l~~~-----------------------------~~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 ---GPTSVILRLPELAAP---DAHFLYV-----------------------------GPRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp ---CCSGGGGGHHHHEEE---EEEEEEE-----------------------------ESSSCCTHHHHHHHHTTCEEEEE
T ss_pred ---CHHHHHHHHHHHcCC---CcEEEEe-----------------------------CCcCCHHHHHHHHHHCCCeEEEE
Confidence 234679999999999 8888700 11224567888889999987776
Q ss_pred Eee
Q 018116 347 TNV 349 (360)
Q Consensus 347 ~~~ 349 (360)
...
T Consensus 165 ~~~ 167 (226)
T 3m33_A 165 DHV 167 (226)
T ss_dssp EEE
T ss_pred Eee
Confidence 544
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-11 Score=105.44 Aligned_cols=141 Identities=15% Similarity=0.144 Sum_probs=98.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcC----CCCCCeEEEeCCCCCC-----CC-CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANM----PQTENLKYIAGDMFQY-----IP-PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~~ri~~~~~D~~~~-----~p-~~D~i~~~ 260 (360)
..+..+|||+|||+|.++..+++.+ |+.+++++|. +.+++.+ +...+++++.+|+.+. .+ .||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999885 5689999999 7655543 3357899999999762 23 59999965
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
.. ..+....++++++++|+| ||++++. .......... . ......+++.++ +++
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~---~--------------~~~~~~~~l~~l-~~~- 203 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVTK---E--------------PEQVFREVEREL-SEY- 203 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTTS---C--------------HHHHHHHHHHHH-HTT-
T ss_pred CC----CHhHHHHHHHHHHHhcCC---CCEEEEE-EecCCCCCCC---C--------------hhhhhHHHHHHH-Hhh-
Confidence 43 222334559999999999 9999887 2221111000 0 001135677777 777
Q ss_pred CceeEEEeeCCc---eeEEEEeC
Q 018116 341 FTHYKITNVFGL---KSLIEVYP 360 (360)
Q Consensus 341 f~~~~~~~~~~~---~~vi~~~~ 360 (360)
|++++...+..+ ..++.+++
T Consensus 204 f~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 204 FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEEC
T ss_pred ceeeeEeccCcccCCCEEEEEEe
Confidence 999998888554 66666654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.6e-12 Score=107.07 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=82.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-C-C-CccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-Y-I-P-PADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~-~-p-~~D~i~~ 259 (360)
..+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ .++++++.+|+.+ + . + .||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4667899999999999999999986 6779999999 888887764 2689999999865 2 2 2 5999998
Q ss_pred cccccc-------CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 260 KLVFHA-------FGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ~~~lh~-------~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
...+.. ...++..++++++.++|+| ||++++......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~~ 143 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYYGG 143 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECCBT
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEccCC
Confidence 765511 1233456799999999999 999998775443
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=104.02 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=93.0
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CCC
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---IPP 253 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~p~ 253 (360)
++..+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .+++++..+|+.+. .+.
T Consensus 25 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 25 IMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 344444 5677899999999999999999886 79999999 888877663 26899999998662 246
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
||+|++..++++ ...+++++.++|+| ||.+++..... .+..++.
T Consensus 101 ~D~v~~~~~~~~-----~~~~l~~~~~~l~~---gG~l~~~~~~~----------------------------~~~~~~~ 144 (192)
T 1l3i_A 101 IDIAVVGGSGGE-----LQEILRIIKDKLKP---GGRIIVTAILL----------------------------ETKFEAM 144 (192)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEEE---EEEEEEEECBH----------------------------HHHHHHH
T ss_pred CCEEEECCchHH-----HHHHHHHHHHhcCC---CcEEEEEecCc----------------------------chHHHHH
Confidence 999999887764 35789999999999 89888865321 0245778
Q ss_pred HHHHHCCCce
Q 018116 334 TLFLDAGFTH 343 (360)
Q Consensus 334 ~ll~~aGf~~ 343 (360)
+++++.||.+
T Consensus 145 ~~l~~~g~~~ 154 (192)
T 1l3i_A 145 ECLRDLGFDV 154 (192)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHCCCce
Confidence 8899999943
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-12 Score=112.80 Aligned_cols=95 Identities=14% Similarity=0.218 Sum_probs=79.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCCccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIPPADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p~~D~i~~~~~lh 264 (360)
..++.+|||||||+|.++..++.+.++.+++++|+ +.+++.|++ .++++|+.+|+.+ +..+||+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 67889999999999988776667778999999999 999998874 3799999999976 4346999998654
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+ +..++++++++.|+| ||+|++.+
T Consensus 198 -~~--d~~~~l~el~r~LkP---GG~Lvv~~ 222 (298)
T 3fpf_A 198 -AE--PKRRVFRNIHRYVDT---ETRIIYRT 222 (298)
T ss_dssp -CS--CHHHHHHHHHHHCCT---TCEEEEEE
T ss_pred -cc--CHHHHHHHHHHHcCC---CcEEEEEc
Confidence 23 346889999999999 99999876
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-11 Score=105.61 Aligned_cols=141 Identities=11% Similarity=0.089 Sum_probs=95.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHH----hcCCCCCCeEEEeCCCCCC-----C-CCccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAV----ANMPQTENLKYIAGDMFQY-----I-PPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~----~~a~~~~ri~~~~~D~~~~-----~-p~~D~i~~~ 260 (360)
+.++.+|||+|||+|.++..+++.. |..+++++|+ +.++ +.+++..++.++.+|+..+ . ..||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 5678999999999999999999864 6889999999 7664 3333357899999998762 1 259999876
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
... ++ +...+++.+++.|+| ||+|++....... |... ......++....|+++|
T Consensus 154 ~a~---~~-~~~il~~~~~~~Lkp---GG~lvisik~~~~--------------d~t~-----~~~e~~~~~~~~L~~~g 207 (232)
T 3id6_C 154 IAQ---PD-QTDIAIYNAKFFLKV---NGDMLLVIKARSI--------------DVTK-----DPKEIYKTEVEKLENSN 207 (232)
T ss_dssp CCC---TT-HHHHHHHHHHHHEEE---EEEEEEEEC---------------------C-----CSSSSTTHHHHHHHHTT
T ss_pred CCC---hh-HHHHHHHHHHHhCCC---CeEEEEEEccCCc--------------ccCC-----CHHHHHHHHHHHHHHCC
Confidence 432 22 233345566679999 9999987322111 1100 01112234556778899
Q ss_pred CceeEEEeeCC---ceeEEEEe
Q 018116 341 FTHYKITNVFG---LKSLIEVY 359 (360)
Q Consensus 341 f~~~~~~~~~~---~~~vi~~~ 359 (360)
|++.+...+.. .+.++.++
T Consensus 208 f~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 208 FETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp EEEEEEEECTTTCSSCEEEEEE
T ss_pred CEEEEEeccCCCcCceEEEEEE
Confidence 99999988844 46666665
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=109.59 Aligned_cols=124 Identities=16% Similarity=0.210 Sum_probs=96.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCC--CCccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYI--PPADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~--p~~D~i~~~~~lh 264 (360)
..+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ...+++..+|+.+.. ..||+|+++...|
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 35678999999999999999888754 9999999 888887764 112899999986643 3699999865443
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCcee
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHY 344 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 344 (360)
....+++++++.|+| ||++++.+.... +.+++.++++++||+++
T Consensus 196 -----~~~~~l~~~~~~Lkp---gG~lils~~~~~----------------------------~~~~v~~~l~~~Gf~~~ 239 (254)
T 2nxc_A 196 -----LHAALAPRYREALVP---GGRALLTGILKD----------------------------RAPLVREAMAGAGFRPL 239 (254)
T ss_dssp -----HHHHHHHHHHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEE
T ss_pred -----HHHHHHHHHHHHcCC---CCEEEEEeeccC----------------------------CHHHHHHHHHHCCCEEE
Confidence 356789999999999 999988654321 35788999999999999
Q ss_pred EEEeeCCcee
Q 018116 345 KITNVFGLKS 354 (360)
Q Consensus 345 ~~~~~~~~~~ 354 (360)
++....+-.+
T Consensus 240 ~~~~~~~W~~ 249 (254)
T 2nxc_A 240 EEAAEGEWVL 249 (254)
T ss_dssp EEEEETTEEE
T ss_pred EEeccCCeEE
Confidence 8877655443
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-11 Score=108.27 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=94.4
Q ss_pred cC-CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CC--CccEEE
Q 018116 193 FE-GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---IP--PADAYF 258 (360)
Q Consensus 193 ~~-~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~p--~~D~i~ 258 (360)
.. +..+|||+|||+|.++..++++.+. +++++|+ +.+++.+++ .++++++.+|+.+. .+ .||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 45 6789999999999999999998765 9999999 888887764 45899999999772 22 599999
Q ss_pred eccccccC------------------ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc
Q 018116 259 FKLVFHAF------------------GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV 320 (360)
Q Consensus 259 ~~~~lh~~------------------~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 320 (360)
++-.++.. .......+++.+.++|+| ||+++++. +.
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~---~~-------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFVH---RP-------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEEE---CT--------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEEE---cH--------------------
Confidence 96443322 113356799999999999 89988832 11
Q ss_pred ccCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 321 SVDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 321 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
....++.+++++.||...++.++
T Consensus 179 ------~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ------ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ------TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------HHHHHHHHHHHHCCCceEEEEEe
Confidence 13456778889999998887766
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.1e-12 Score=114.74 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=93.5
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC----C---CCeEEEeCCCCCCCC--C
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ----T---ENLKYIAGDMFQYIP--P 253 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~---~ri~~~~~D~~~~~p--~ 253 (360)
++..++ ..+..+|||+|||+|.++..+++. .|+.+++++|+ +.+++.+++ . ++++++.+|+.++.+ .
T Consensus 102 ~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 102 IIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp ----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 344444 567789999999999999999998 78899999999 888876653 2 589999999988554 4
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
||+|++ ++++. .++|+++.++|+| ||++++...... ..+++.
T Consensus 180 fD~Vi~-----~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~----------------------------~~~~~~ 221 (275)
T 1yb2_A 180 YDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFYLPNFD----------------------------QSEKTV 221 (275)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEEESSHH----------------------------HHHHHH
T ss_pred ccEEEE-----cCcCH--HHHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHHHH
Confidence 999997 34544 3689999999999 999988763210 124556
Q ss_pred HHHHHCCCceeEEEe
Q 018116 334 TLFLDAGFTHYKITN 348 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~ 348 (360)
+.++++||..+++..
T Consensus 222 ~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 222 LSLSASGMHHLETVE 236 (275)
T ss_dssp HHSGGGTEEEEEEEE
T ss_pred HHHHHCCCeEEEEEE
Confidence 667778888777655
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.1e-12 Score=114.30 Aligned_cols=151 Identities=14% Similarity=0.118 Sum_probs=100.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-------CeEEEeCCCCC---------CCC
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TE-------NLKYIAGDMFQ---------YIP 252 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-------ri~~~~~D~~~---------~~p 252 (360)
+..+|||||||+|..+..+++. ...+++|+|+ +.+++.|++ .. +++|...|+.. +.+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4689999999999877766654 3568999999 999998874 11 26788888722 123
Q ss_pred --CccEEEeccccccC-ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch---------h--hhh-HhHh----
Q 018116 253 --PADAYFFKLVFHAF-GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH---------Q--VTE-AKLL---- 313 (360)
Q Consensus 253 --~~D~i~~~~~lh~~-~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~---------~--~~~-~~~~---- 313 (360)
.||+|++..++|+. ++++..++|++++++|+| ||.+++..+......... . ... +...
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 203 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIA 203 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccc
Confidence 59999999999984 545567999999999999 999988765322110000 0 000 0000
Q ss_pred hhhh-hhcccC------CcccCHHHHHHHHHHCCCceeEEEee
Q 018116 314 GDTL-MSVSVD------GKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 314 ~d~~-~~~~~~------g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.+.. .....+ -...+.+++.++++++||++++....
T Consensus 204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 0000 000001 12457899999999999999888654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-11 Score=108.67 Aligned_cols=126 Identities=12% Similarity=0.165 Sum_probs=97.7
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP-- 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p-- 252 (360)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .+++++..+|+.+.++
T Consensus 84 ~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 84 LIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 3444455 567889999999999999999999 78999999999 888887764 4669999999987654
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
.||+|++ +.++. ..+++++.++|+| ||++++...... ...++
T Consensus 162 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~ 203 (255)
T 3mb5_A 162 NVDHVIL-----DLPQP--ERVVEHAAKALKP---GGFFVAYTPCSN----------------------------QVMRL 203 (255)
T ss_dssp SEEEEEE-----CSSCG--GGGHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred CcCEEEE-----CCCCH--HHHHHHHHHHcCC---CCEEEEEECCHH----------------------------HHHHH
Confidence 4999987 34443 3679999999999 999988653210 23456
Q ss_pred HHHHHHCC--CceeEEEee
Q 018116 333 KTLFLDAG--FTHYKITNV 349 (360)
Q Consensus 333 ~~ll~~aG--f~~~~~~~~ 349 (360)
.+.+++.| |..+++...
T Consensus 204 ~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 204 HEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHcCCCccccEEEEE
Confidence 77888888 887776544
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.5e-12 Score=104.79 Aligned_cols=135 Identities=12% Similarity=0.048 Sum_probs=94.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-CC-CccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-IP-PADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-~p-~~D~i~~~~~l 263 (360)
.+..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++ ..++++ .|.... .+ .||+|++..++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 5688999999999999999999999999999999 999988774 224555 666553 33 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCce
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
|++ ++ ....+.++.+.|+| ||.++-++.-.-..+.. .| ...-...|++.+ ...+.+
T Consensus 126 HlL-~~-~~~al~~v~~~L~p---ggvfISfptksl~Gr~~------------gm------~~~Y~~~~~~~~-~~~~~~ 181 (200)
T 3fzg_A 126 PVL-KQ-QDVNILDFLQLFHT---QNFVISFPIKSLSGKEK------------GM------EENYQLWFESFT-KGWIKI 181 (200)
T ss_dssp HHH-HH-TTCCHHHHHHTCEE---EEEEEEEECCCCC--CT------------TC------CCCHHHHHHHHT-TTTSCE
T ss_pred Hhh-hh-hHHHHHHHHHHhCC---CCEEEEeChHHhcCCCc------------ch------hhhHHHHHHHhc-cCccee
Confidence 999 43 34556699999999 65555544111111100 00 112345666666 556777
Q ss_pred eEEEeeCCcee
Q 018116 344 YKITNVFGLKS 354 (360)
Q Consensus 344 ~~~~~~~~~~~ 354 (360)
++...+++-..
T Consensus 182 ~~~~~~~nEl~ 192 (200)
T 3fzg_A 182 LDSKVIGNELV 192 (200)
T ss_dssp EEEEEETTEEE
T ss_pred eeeeeeCceEE
Confidence 77777766433
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.28 E-value=9.3e-12 Score=106.51 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=75.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC--CCccEEEecccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI--PPADAYFFKLVFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~--p~~D~i~~~~~lh~ 265 (360)
+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..++++..+|+.+.. ..||+|++..+ +
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~- 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C-
Confidence 467999999999999999999999999999999 888877653 245999999998743 36999997542 2
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
....++++++++|+| ||.+++.
T Consensus 143 ----~~~~~l~~~~~~L~~---gG~l~~~ 164 (207)
T 1jsx_A 143 ----SLNDMVSWCHHLPGE---QGRFYAL 164 (207)
T ss_dssp ----SHHHHHHHHTTSEEE---EEEEEEE
T ss_pred ----CHHHHHHHHHHhcCC---CcEEEEE
Confidence 235789999999999 8888885
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-11 Score=106.00 Aligned_cols=130 Identities=11% Similarity=0.079 Sum_probs=100.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP---PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p---~~D~i~~~~ 261 (360)
..++.+|||||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|++..+|.++..+ .||+|++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 35678999999999999999999988889999999 888888764 4689999999988543 399998765
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
+ .-+-...+|....+.|++ +++|++.-. .....++++|.+.||
T Consensus 99 m----Gg~lI~~IL~~~~~~L~~---~~~lIlq~~------------------------------~~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 99 M----GGTLIRTILEEGAAKLAG---VTKLILQPN------------------------------IAAWQLREWSEQNNW 141 (244)
T ss_dssp E----CHHHHHHHHHHTGGGGTT---CCEEEEEES------------------------------SCHHHHHHHHHHHTE
T ss_pred C----chHHHHHHHHHHHHHhCC---CCEEEEEcC------------------------------CChHHHHHHHHHCCC
Confidence 4 445577899999999998 788777321 135678899999999
Q ss_pred ceeEEEee--CC-ceeEEEEe
Q 018116 342 THYKITNV--FG-LKSLIEVY 359 (360)
Q Consensus 342 ~~~~~~~~--~~-~~~vi~~~ 359 (360)
.+++-.-+ .+ ++.+|.+.
T Consensus 142 ~i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 142 LITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 98665544 22 34455553
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-12 Score=111.47 Aligned_cols=121 Identities=12% Similarity=0.014 Sum_probs=93.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC-----CCccEEEec
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YI-----PPADAYFFK 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~-----p~~D~i~~~ 260 (360)
.+..+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ..+++++.+|+.+ +. ..||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4678999999999999999999999999999999 888887764 3469999999866 32 359999986
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
.+- + ...+++.+.+.|+| ||++++..... ... ...++...++..|
T Consensus 159 a~~----~--~~~ll~~~~~~Lkp---gG~l~~~~g~~----~~~----------------------e~~~~~~~l~~~G 203 (249)
T 3g89_A 159 AVA----P--LCVLSELLLPFLEV---GGAAVAMKGPR----VEE----------------------ELAPLPPALERLG 203 (249)
T ss_dssp SSC----C--HHHHHHHHGGGEEE---EEEEEEEECSC----CHH----------------------HHTTHHHHHHHHT
T ss_pred CcC----C--HHHHHHHHHHHcCC---CeEEEEEeCCC----cHH----------------------HHHHHHHHHHHcC
Confidence 542 2 35789999999999 99988755211 000 1234566777889
Q ss_pred CceeEEEee
Q 018116 341 FTHYKITNV 349 (360)
Q Consensus 341 f~~~~~~~~ 349 (360)
|...++.++
T Consensus 204 ~~~~~~~~~ 212 (249)
T 3g89_A 204 GRLGEVLAL 212 (249)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 998888766
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.9e-12 Score=116.22 Aligned_cols=107 Identities=21% Similarity=0.313 Sum_probs=85.7
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCCCC-
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQYIP- 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~~~p- 252 (360)
.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++|..+|+.++.+
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 3455555 34558999999999999999999999999999999 888887764 1268899999988655
Q ss_pred -CccEEEecccccc---CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 253 -PADAYFFKLVFHA---FGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 253 -~~D~i~~~~~lh~---~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.||+|++...+|+ .++....++++++.++|+| ||+++++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEE
Confidence 5999999988885 3445556899999999999 99998864
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=111.41 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=94.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC-C---CC-CccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ-Y---IP-PADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~-~---~p-~~D~i 257 (360)
....+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .+|++++.+|+.+ . .+ .||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998877889999999 888876653 4789999999866 1 12 59999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHH
Q 018116 258 FFKLVFHAFGDEDC--LKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTL 335 (360)
Q Consensus 258 ~~~~~lh~~~~~~~--~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~l 335 (360)
++....++.+.... .+++++++++|+| ||.+++..... .. ......++.+.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~~~--------------~~----------~~~~~~~~~~~ 226 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQGESI--------------WL----------DLELIEKMSRF 226 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE---EEEEEEEECCT--------------TT----------CHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEecCCc--------------cc----------chHHHHHHHHH
Confidence 99766665544322 5789999999999 88888753210 00 01145788899
Q ss_pred HHHCCCceeEEEee
Q 018116 336 FLDAGFTHYKITNV 349 (360)
Q Consensus 336 l~~aGf~~~~~~~~ 349 (360)
++++||..+++...
T Consensus 227 l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 227 IRETGFASVQYALM 240 (304)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHhCCCCcEEEEEe
Confidence 99999998887654
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.2e-12 Score=116.97 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=88.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-Ccc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP-PAD 255 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p-~~D 255 (360)
..+++.++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ...++++.+|+.+..+ .||
T Consensus 186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 34455553 23467999999999999999999999999999999 888887764 3347788999877433 699
Q ss_pred EEEecccccc---CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 256 AYFFKLVFHA---FGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 256 ~i~~~~~lh~---~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+|++..++|+ .+.+...+++++++++|+| ||.+++...
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~ 304 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEc
Confidence 9999999986 2455678999999999999 999998764
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.5e-11 Score=99.23 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=92.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--Cc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP--PA 254 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p--~~ 254 (360)
.++..+. ..+..+|||+|||+|.++..+++ +..+++++|. +.+++.+++ .++++++.+|+.++.+ .|
T Consensus 26 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (183)
T 2yxd_A 26 VSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF 101 (183)
T ss_dssp HHHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence 3444444 55678999999999999999998 7889999999 888887764 2689999999877443 69
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..+ .....+++++++. | ||.+++...... +..++.+
T Consensus 102 D~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~~~~~~----------------------------~~~~~~~ 142 (183)
T 2yxd_A 102 NKAFIGGT------KNIEKIIEILDKK--K---INHIVANTIVLE----------------------------NAAKIIN 142 (183)
T ss_dssp SEEEECSC------SCHHHHHHHHHHT--T---CCEEEEEESCHH----------------------------HHHHHHH
T ss_pred cEEEECCc------ccHHHHHHHHhhC--C---CCEEEEEecccc----------------------------cHHHHHH
Confidence 99999887 2345789999888 8 899988663210 2356778
Q ss_pred HHHHCCCceeEE
Q 018116 335 LFLDAGFTHYKI 346 (360)
Q Consensus 335 ll~~aGf~~~~~ 346 (360)
.+++.||.+..+
T Consensus 143 ~l~~~g~~~~~~ 154 (183)
T 2yxd_A 143 EFESRGYNVDAV 154 (183)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCeEEEE
Confidence 899999876554
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=109.47 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=98.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEEeccccccCChhH
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDED 270 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~ 270 (360)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++...-.++.+|+.+ +.+ .||+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 6789999999999999999987 679999999 8888877641111388899876 443 59999998877777443
Q ss_pred HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcc----hhhhhHhHhhhhhhhcc------cCCcccCHHHHHHHHHHCC
Q 018116 271 CLKILKKCREAIAGNGERGKVLIMDIVINEKEDK----HQVTEAKLLGDTLMSVS------VDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 271 ~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~----~~~~~~~~~~d~~~~~~------~~g~~~t~~e~~~ll~~aG 340 (360)
..++|++++++|+| ||++++........... ..+.............. .....++.+++.++ +|
T Consensus 131 ~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---aG 204 (260)
T 2avn_A 131 KDKAFSEIRRVLVP---DGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL---EG 204 (260)
T ss_dssp HHHHHHHHHHHEEE---EEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---TT
T ss_pred HHHHHHHHHHHcCC---CeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHHh---cC
Confidence 57899999999999 89998876543210000 00000000000000000 00114578888777 99
Q ss_pred CceeEEEeeCC
Q 018116 341 FTHYKITNVFG 351 (360)
Q Consensus 341 f~~~~~~~~~~ 351 (360)
|+++++....+
T Consensus 205 f~~~~~~~~~~ 215 (260)
T 2avn_A 205 FETVDIRGIGV 215 (260)
T ss_dssp EEEEEEEEECS
T ss_pred ceEEEEECCCC
Confidence 99998887643
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=8.8e-11 Score=105.42 Aligned_cols=121 Identities=15% Similarity=0.107 Sum_probs=93.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-C-CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYI-P-PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~-p-~~D~i~~~~~ 262 (360)
..++.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+.. + .||+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 346789999999999999999998766 8999999 888887763 456999999998833 3 5999988533
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCc
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 342 (360)
. ...++++++.++|+| ||.+++.+....... .....+++.+.++++||.
T Consensus 202 ~------~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYD 250 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCE
T ss_pred h------hHHHHHHHHHHHCCC---CeEEEEEEeeccccc----------------------cccHHHHHHHHHHHcCCe
Confidence 1 224679999999999 899888776532110 112567888999999998
Q ss_pred eeE
Q 018116 343 HYK 345 (360)
Q Consensus 343 ~~~ 345 (360)
...
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 766
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.23 E-value=6e-11 Score=105.44 Aligned_cols=99 Identities=10% Similarity=0.212 Sum_probs=77.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC--------CC-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQY--------IP- 252 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~--------~p- 252 (360)
..+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 34678999999999999999999999999999999 888876543 13699999999764 22
Q ss_pred -CccEEEeccccc----------------cCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 253 -PADAYFFKLVFH----------------AFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 253 -~~D~i~~~~~lh----------------~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.||+|+++-..+ |........+++.+.++|+| ||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEE
Confidence 599999973322 22223356889999999999 8998874
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-11 Score=102.18 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=87.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CC---C--CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-YI---P--PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~~---p--~~D~i~~~~~l 263 (360)
..++.+|||||||. +.+|. +.+++.+++ ..+++++.+|+.+ +. + .||+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56789999999996 23888 888887764 3469999999976 33 4 49999999999
Q ss_pred ccC-ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCc
Q 018116 264 HAF-GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 264 h~~-~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 342 (360)
||+ ++. .++|++++++|+| ||++++.+........ ....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~aGf- 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRP---GGCLFLKEPVETAVDN-------------------NSKVKTASKLCSALTLSGL- 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEE---EEEEEEEEEEESSSCS-------------------SSSSCCHHHHHHHHHHTTC-
T ss_pred hhcccCH--HHHHHHHHHHCCC---CEEEEEEccccccccc-------------------ccccCCHHHHHHHHHHCCC-
Confidence 998 554 5789999999999 9999996654322100 1224588999999999999
Q ss_pred eeEEEe
Q 018116 343 HYKITN 348 (360)
Q Consensus 343 ~~~~~~ 348 (360)
+. +..
T Consensus 129 i~-~~~ 133 (176)
T 2ld4_A 129 VE-VKE 133 (176)
T ss_dssp EE-EEE
T ss_pred cE-eec
Confidence 43 443
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=106.68 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=77.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----CC--CccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY----IP--PADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~----~p--~~D~i~~~~ 261 (360)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+. ++ .+|.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 567999999999999999999999999999999 888877653 35799999997652 33 599998875
Q ss_pred ccccCChhHH------HHHHHHHHHhccCCCCCcEEEEEe
Q 018116 262 VFHAFGDEDC------LKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 262 ~lh~~~~~~~------~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
...+...... ..+++.++++|+| ||.+++..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence 4432222211 2489999999999 89888755
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-11 Score=113.91 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=86.1
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcC-------CC--------CCCeEEEeCCC
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANM-------PQ--------TENLKYIAGDM 247 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~ri~~~~~D~ 247 (360)
.+++.+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.| +. ..+++++.+|.
T Consensus 233 ~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 233 DVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 3445555 56788999999999999999999888779999999 8777666 32 26899998765
Q ss_pred CC-C------CCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 248 FQ-Y------IPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 248 ~~-~------~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
+. + ...||+|++.++++ . ++....|+++.+.|+| ||+|++.+.+.+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKV---GCKIISLKSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred cccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence 43 2 23599999887773 2 3456789999999999 99999998776654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-11 Score=103.60 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=76.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC--CccEEEeccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IP--PADAYFFKLV 262 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p--~~D~i~~~~~ 262 (360)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .+|.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 567999999999999999999999999999999 888887753 3679999999876 2 33 5999887543
Q ss_pred cccCChhH------HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 263 FHAFGDED------CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 263 lh~~~~~~------~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
..+..... ...+|++++++|+| ||.|++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence 32111100 24789999999999 99988754
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.5e-11 Score=112.54 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=84.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-Cc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP-PA 254 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~ 254 (360)
.+++.+. ..+..+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +.+ .|
T Consensus 41 ~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 41 AILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 3444444 456789999999999999988875 5679999999446665542 3789999999987 444 59
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
|+|++..+++|+..+.....+.+++++|+| ||.+++.
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~ 154 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT 154 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESC
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEe
Confidence 999999999998877778889999999999 8888743
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=101.30 Aligned_cols=99 Identities=12% Similarity=0.161 Sum_probs=79.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C-----CCcc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I-----PPAD 255 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~-----p~~D 255 (360)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++++++.+|+.+. . ..||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 35678999999999999999999998 889999999 888877653 46799999998652 1 3599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
+|++... ......+++++.+.|+| ||.+++.+....
T Consensus 136 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDAD-----KQNNPAYFEWALKLSRP---GTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTCCT---TCEEEEESCSGG
T ss_pred EEEEcCC-----cHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 9987543 33456789999999999 897777665543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.9e-11 Score=102.27 Aligned_cols=98 Identities=12% Similarity=0.110 Sum_probs=80.3
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---CCc
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---PPA 254 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---p~~ 254 (360)
++..+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..++++..+|+.+.. ..|
T Consensus 69 ~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 69 MTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 344444 567889999999999999999998 689999999 888887764 357999999997733 259
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
|+|++..++|++++ ++.+.|+| ||++++....
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEECS
T ss_pred cEEEEccchhhhhH--------HHHHhccc---CcEEEEEEcC
Confidence 99999999999886 46788999 8988886543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.8e-11 Score=105.08 Aligned_cols=125 Identities=15% Similarity=0.166 Sum_probs=95.9
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-CC-
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-IP- 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-~p- 252 (360)
.++..++ ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .+++++..+|+.+. ++
T Consensus 87 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 87 AMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 4455555 667889999999999999999998 67899999999 888877653 26899999999774 55
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHH
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEE 331 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e 331 (360)
.||+|++ ++++. ..+|+++.++|+| ||++++...... ...+
T Consensus 165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~ 206 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEP--WKVLEKAALALKP---DRFLVAYLPNIT----------------------------QVLE 206 (258)
T ss_dssp TCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESCHH----------------------------HHHH
T ss_pred CCcCEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCCHH----------------------------HHHH
Confidence 4999997 34443 3679999999999 999998763210 1235
Q ss_pred HHHHHHHCCCceeEEEe
Q 018116 332 WKTLFLDAGFTHYKITN 348 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~ 348 (360)
+.+.++++||..+++..
T Consensus 207 ~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 207 LVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHCCCceEEEEE
Confidence 55667778888776654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.3e-11 Score=102.45 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=81.0
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---C
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP---P 253 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p---~ 253 (360)
++..+. ..+..+|||||||+|.++..+++.. |..+++++|. +.+++.+++ .+++++..+|+....+ .
T Consensus 69 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 69 MCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 344444 5677899999999999999999987 6689999999 888887764 3579999999866433 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
||+|++..++|++++ ++.+.|+| ||++++...
T Consensus 147 fD~v~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~ 178 (215)
T 2yxe_A 147 YDRIYTTAAGPKIPE--------PLIRQLKD---GGKLLMPVG 178 (215)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEES
T ss_pred eeEEEECCchHHHHH--------HHHHHcCC---CcEEEEEEC
Confidence 999999999998874 67888999 899888654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.8e-11 Score=106.87 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=94.7
Q ss_pred HHHHhhhhc-CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhc-CCCCCCeEEEe-CCCCC----CCC--Cc
Q 018116 185 VKDCCRKIF-EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVAN-MPQTENLKYIA-GDMFQ----YIP--PA 254 (360)
Q Consensus 185 ~~~~~~~~~-~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~ri~~~~-~D~~~----~~p--~~ 254 (360)
++..+. . .++.+|||||||+|.++..+++. +..+++++|+ +.|++. ++...++.... .|+.. .+| .|
T Consensus 76 ~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~f 152 (291)
T 3hp7_A 76 ALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLP 152 (291)
T ss_dssp HHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred HHHhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCC
Confidence 445554 3 35679999999999999988886 4569999999 888877 33356665443 34422 133 39
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCc-------cc
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGK-------ER 327 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~-------~~ 327 (360)
|++++..++|++ ..+|.+++++|+| ||+++++. -|.-.... ...+ .+|. .+
T Consensus 153 D~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~lv--kPqfe~~~------~~~~------~~G~vrd~~~~~~ 210 (291)
T 3hp7_A 153 SFASIDVSFISL-----NLILPALAKILVD---GGQVVALV--KPQFEAGR------EQIG------KNGIVRESSIHEK 210 (291)
T ss_dssp SEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CGGGTSCG------GGCC-------CCCCCCHHHHHH
T ss_pred CEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEEE--CcccccCh------hhcC------CCCccCCHHHHHH
Confidence 999998888755 4679999999999 99998852 11110000 0000 0122 23
Q ss_pred CHHHHHHHHHHCCCceeEEEee
Q 018116 328 TDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
+.+++.++++++||.+..+..-
T Consensus 211 ~~~~v~~~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 211 VLETVTAFAVDYGFSVKGLDFS 232 (291)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEEEC
Confidence 6788999999999998877554
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=98.13 Aligned_cols=100 Identities=10% Similarity=0.056 Sum_probs=80.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C--CCccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---I--PPADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~--p~~D~i~~~~ 261 (360)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+. . ..||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 46789999999999999987774 5668999999 899888764 35899999998762 2 3699999987
Q ss_pred ccccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeeec
Q 018116 262 VFHAFGDEDCLKILKKCRE--AIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~e~~~ 298 (360)
.+|+ ..++..++++.+.+ +|+| ||.+++.....
T Consensus 122 p~~~-~~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNV-DSADVDAILAALGTNGWTRE---GTVAVVERATT 156 (189)
T ss_dssp CTTS-CHHHHHHHHHHHHHSSSCCT---TCEEEEEEETT
T ss_pred CCCc-chhhHHHHHHHHHhcCccCC---CeEEEEEecCC
Confidence 7664 34556789999999 9999 89888866543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.2e-11 Score=116.24 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=85.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-C
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP-P 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~ 253 (360)
..+++.+. ..+..+|||||||+|.++..+++ .+..+++++|+..+++.+++ .++|+++.+|+.+ +.+ .
T Consensus 148 ~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 148 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 44555554 45678999999999999998887 57789999999447766653 3789999999987 555 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
||+|++..+++++.+++....+.+++++|+| ||.+++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence 9999998888888877778889999999999 888874
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=96.75 Aligned_cols=98 Identities=17% Similarity=0.290 Sum_probs=78.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-C--------CC--CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDLPHAVANMPQTENLKYIAGDMFQ-Y--------IP--PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~-~--------~p--~~D~i~~~ 260 (360)
..+..+|||+|||+|.++..+++.+ |+.+++++|+..+++ ..++++..+|+.+ + .+ .||+|++.
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 3567899999999999999999985 678999999943433 2689999999987 3 44 59999999
Q ss_pred cccccCChhH---------HHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 261 LVFHAFGDED---------CLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 261 ~~lh~~~~~~---------~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
..+|+..... ..++++++.++|+| ||.+++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~ 138 (180)
T 1ej0_A 96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVFQ 138 (180)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEES
T ss_pred CCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEec
Confidence 8888765431 15789999999999 8998886643
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.9e-11 Score=104.26 Aligned_cols=136 Identities=7% Similarity=-0.007 Sum_probs=100.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP--PADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~ 265 (360)
....+|||||||+|-++..+....|..+++++|+ +.+++.++. ..+.++...|.....| .||++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 999887764 5668999999987433 5999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
+.+++....+ ++.++|+| +|.++-++.-.-..... .++ ..-...|.+.+.+.|+. ++
T Consensus 211 Le~q~kg~g~-~ll~aL~~---~~vvVSfp~ksl~Grs~--------gm~----------~~Y~~~~e~~~~~~g~~-~~ 267 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNS---PNIVVTFPTKSLGQRSK--------GMF----------QNYSQSFESQARERSCR-IQ 267 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSC---SEEEEEEECC---------------CHH----------HHHHHHHHHHHHHHTCC-EE
T ss_pred hhhhhhHHHH-HHHHHhCC---CCEEEeccchhhcCCCc--------chh----------hHHHHHHHHHHHhcCCc-ee
Confidence 9988766677 89999999 55555444311111110 000 11357888999999994 44
Q ss_pred EEeeCCc
Q 018116 346 ITNVFGL 352 (360)
Q Consensus 346 ~~~~~~~ 352 (360)
...+++-
T Consensus 268 ~~~~~nE 274 (281)
T 3lcv_B 268 RLEIGNE 274 (281)
T ss_dssp EEEETTE
T ss_pred eeeecCe
Confidence 4455554
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-11 Score=105.62 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=80.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CC---CCccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ---YI---PPADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~---~~---p~~D~i 257 (360)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|+.+ .. ..||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 45678999999999999999999998 899999999 888887763 4689999999865 12 269999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
++.. +......+++++.++|+| ||.|++.+....
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~~ 174 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSRP---GTLIIGDNVVRD 174 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCCT---TCEEEEECCSGG
T ss_pred EECC-----chHHHHHHHHHHHHhcCC---CeEEEEeCCCcC
Confidence 8754 344456789999999999 898877665543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.2e-11 Score=105.75 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=80.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHH--CCCCeEEEeec-hHHHhcCCC---CC-------C----------------------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEA--FPGIKCTVLDL-PHAVANMPQ---TE-------N---------------------- 239 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~---~~-------r---------------------- 239 (360)
+..+|||+|||+|.++..+++. ++..+++++|+ +.+++.++. .. +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999999998 78889999999 999887763 22 2
Q ss_pred ---eE-------------EEeCCCCCCC------C--CccEEEeccccccCCh-------hHHHHHHHHHHHhccCCCCC
Q 018116 240 ---LK-------------YIAGDMFQYI------P--PADAYFFKLVFHAFGD-------EDCLKILKKCREAIAGNGER 288 (360)
Q Consensus 240 ---i~-------------~~~~D~~~~~------p--~~D~i~~~~~lh~~~~-------~~~~~~L~~~~~~L~p~~~g 288 (360)
++ |..+|+++.. + .||+|++...+++..+ +...+++++++++|+| |
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---g 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA---H 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---T
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---C
Confidence 67 9999998843 3 5999999876665443 5567899999999999 9
Q ss_pred cEEEEEee
Q 018116 289 GKVLIMDI 296 (360)
Q Consensus 289 G~lli~e~ 296 (360)
|+++++..
T Consensus 208 G~l~~~~~ 215 (250)
T 1o9g_A 208 AVIAVTDR 215 (250)
T ss_dssp CEEEEEES
T ss_pred cEEEEeCc
Confidence 99988543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=102.53 Aligned_cols=99 Identities=14% Similarity=0.174 Sum_probs=80.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C------CCcc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--Y-I------PPAD 255 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~-~------p~~D 255 (360)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|+.+ + . ..||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 4578999999999999999999986 889999999 888877764 4689999999865 2 2 4699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
+|++... ......+++++.++|+| ||.|++-+.....
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCccCC
Confidence 9987543 34456789999999999 8888876666544
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=101.78 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=77.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHH----CCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCC--C---C--CccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEA----FPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQY--I---P--PADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~--~---p--~~D~i~~~~ 261 (360)
+..+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. .++|+++.+|+.+. . + .||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 4579999999999999999998 68899999999 888888764 57899999999762 1 2 499998755
Q ss_pred ccccCChhHHHHHHHHHHH-hccCCCCCcEEEEEee
Q 018116 262 VFHAFGDEDCLKILKKCRE-AIAGNGERGKVLIMDI 296 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~-~L~p~~~gG~lli~e~ 296 (360)
. |. +..++|+++.+ .|+| ||+|++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~Lkp---GG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEE---GDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence 4 42 34678999997 9999 999988665
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.5e-11 Score=104.39 Aligned_cols=99 Identities=14% Similarity=0.250 Sum_probs=79.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-----CCccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYI-----PPADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~-----p~~D~i~~ 259 (360)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+.. ..||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 34678999999999999999999889999999999 888887764 358999999997732 35999986
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
... ......+++++.+.|+| ||.|++-+....
T Consensus 149 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d~~~~~ 180 (232)
T 3ntv_A 149 DAA-----KAQSKKFFEIYTPLLKH---QGLVITDNVLYH 180 (232)
T ss_dssp ETT-----SSSHHHHHHHHGGGEEE---EEEEEEECTTGG
T ss_pred cCc-----HHHHHHHHHHHHHhcCC---CeEEEEeeCCcC
Confidence 532 33356789999999999 888877555443
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-10 Score=102.31 Aligned_cols=99 Identities=16% Similarity=0.227 Sum_probs=74.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC------------CCCCeEEEeCCCCC--C--CC--Cc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP------------QTENLKYIAGDMFQ--Y--IP--PA 254 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~ri~~~~~D~~~--~--~p--~~ 254 (360)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+ ...+++++.+|+.+ + ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567999999999999999999999999999999 88876542 24689999999976 2 33 59
Q ss_pred cEEEeccccccCChh--H----HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 255 DAYFFKLVFHAFGDE--D----CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 255 D~i~~~~~lh~~~~~--~----~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
|.|++...-.+.... . ...+|++++++|+| ||.|++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence 998864332211100 0 13689999999999 89988764
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=108.83 Aligned_cols=96 Identities=11% Similarity=0.162 Sum_probs=81.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC-CC--CccEEEecccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQY-IP--PADAYFFKLVFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~-~p--~~D~i~~~~~lh~ 265 (360)
+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+. .+ .||+|++...+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999987 679999999 888887764 33589999999883 33 6999999999987
Q ss_pred ---CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 266 ---FGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 266 ---~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
...+...++++++++.|+| ||.++++.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence 3456677899999999999 89988864
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=104.99 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=75.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC-Cc---cEEEec-
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP-PA---DAYFFK- 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p-~~---D~i~~~- 260 (360)
.+..+|||+|||+|.++..+++. |+.+++++|+ +.+++.+++ .++++|+.+|++++.+ .| |+|+++
T Consensus 122 ~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnP 200 (284)
T 1nv8_A 122 YGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP 200 (284)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred cCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcC
Confidence 35679999999999999999999 9999999999 899887764 3479999999988543 58 999986
Q ss_pred -----------cccccCChh------HHHHHHHHHH-HhccCCCCCcEEEE
Q 018116 261 -----------LVFHAFGDE------DCLKILKKCR-EAIAGNGERGKVLI 293 (360)
Q Consensus 261 -----------~~lh~~~~~------~~~~~L~~~~-~~L~p~~~gG~lli 293 (360)
.+. |.+.. +-..+++++. +.|+| ||.+++
T Consensus 201 Pyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~ 247 (284)
T 1nv8_A 201 PYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM 247 (284)
T ss_dssp CCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred CCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence 233 22221 1126899999 99999 888876
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.15 E-value=6.9e-11 Score=106.01 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=81.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP-- 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p-- 252 (360)
.++..++ ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .+++++..+|+.+.++
T Consensus 103 ~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 103 FIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 4455555 667889999999999999999999 67899999999 888887764 2589999999977544
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.||+|++. .++. ..+|+++.++|+| ||++++.+.
T Consensus 181 ~~D~V~~~-----~~~~--~~~l~~~~~~L~p---gG~l~~~~~ 214 (277)
T 1o54_A 181 DVDALFLD-----VPDP--WNYIDKCWEALKG---GGRFATVCP 214 (277)
T ss_dssp SEEEEEEC-----CSCG--GGTHHHHHHHEEE---EEEEEEEES
T ss_pred ccCEEEEC-----CcCH--HHHHHHHHHHcCC---CCEEEEEeC
Confidence 59999972 3433 3679999999999 899988763
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.4e-10 Score=95.50 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=77.3
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCC--CCeEEEeechHHHhcCCCCCCeEEEeCCCCC-C-----------
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFP--GIKCTVLDLPHAVANMPQTENLKYIAGDMFQ-Y----------- 250 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~-~----------- 250 (360)
+.+.+. .+.+..+|||||||+|.++..+++++| +.+++++|+.++. ..++++++.+|+.+ +
T Consensus 13 ~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 13 LDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp HHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-------
T ss_pred HHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccc
Confidence 344443 135678999999999999999999998 6899999994421 24679999999976 3
Q ss_pred --------------CC--CccEEEeccccccCC----hhH-----HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 251 --------------IP--PADAYFFKLVFHAFG----DED-----CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 251 --------------~p--~~D~i~~~~~lh~~~----~~~-----~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++ .||+|++...+|+.. +.. ..++|++++++|+| ||++++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~ 154 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVKM 154 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 23 599999988777532 211 12489999999999 88887743
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=101.10 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=80.1
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCC---CCcc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQYI---PPAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~~~---p~~D 255 (360)
.++..+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+.. ..||
T Consensus 61 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 3444444 5677899999999999999999985 79999999 888887764 228999999997633 2599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+|++..++|++++ ++.+.|+| ||++++....
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~~ 167 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKE---GGIMILPIGV 167 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEE---EEEEEEEECS
T ss_pred EEEECCcHHHHHH--------HHHHHcCC---CcEEEEEEcC
Confidence 9999999998875 47788999 8999887643
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=4.5e-11 Score=103.56 Aligned_cols=99 Identities=13% Similarity=0.210 Sum_probs=78.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CC------CCc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ---YI------PPA 254 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~---~~------p~~ 254 (360)
..+..+|||||||+|..+..+++.++ +.+++++|+ +.+++.+++ .++++++.+|+.+ .. ..|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34678999999999999999999875 889999999 888887764 3579999999744 12 359
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
|+|++....+++.+ ..++++.+ ++|+| ||.|++.+..
T Consensus 136 D~V~~d~~~~~~~~--~~~~~~~~-~~Lkp---gG~lv~~~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYLP--DTLLLEKC-GLLRK---GTVLLADNVI 172 (221)
T ss_dssp SEEEECSCGGGHHH--HHHHHHHT-TCCCT---TCEEEESCCC
T ss_pred EEEEEcCCcccchH--HHHHHHhc-cccCC---CeEEEEeCCC
Confidence 99999887776644 24567777 99999 8888775544
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.6e-11 Score=108.98 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=77.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
..+..+|||||||+|.++..++++ +..+++++|..++++.+++ .++++++.+|+.+ +.| .||+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 346789999999999999999987 6669999999557776653 4679999999987 555 5999999776
Q ss_pred cccC-ChhHHHHHHHHHHHhccCCCCCcEEE
Q 018116 263 FHAF-GDEDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 263 lh~~-~~~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
.+++ ..+....+++.+.++|+| ||.++
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li 170 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAP---DGLIF 170 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred cccccCchhHHHHHHHHHHhCCC---CCEEc
Confidence 5554 233456789999999999 88876
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=101.81 Aligned_cols=98 Identities=13% Similarity=0.262 Sum_probs=80.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C---CCccEEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I---PPADAYF 258 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~---p~~D~i~ 258 (360)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+. . ..||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34678999999999999999999999999999999 888887764 35899999998762 2 3599999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
+....+ ....+|+++.++|+| ||++++.+...
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~~ 163 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRP---GGLILSDNVLF 163 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEE---EEEEEEETTTC
T ss_pred ECCCHH-----HHHHHHHHHHHHcCC---CeEEEEEcCCc
Confidence 876643 346789999999999 88888865443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=102.07 Aligned_cols=100 Identities=22% Similarity=0.243 Sum_probs=80.8
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP--- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p--- 252 (360)
..+++.+. ..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..++++..+|+..+++
T Consensus 81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 44455555 56778999999999999999999987 89999998 888887764 2469999999854443
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.||+|++..+++++++ ++.+.|+| ||++++...
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEEEe
Confidence 4999999999998875 56788999 898888554
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.11 E-value=9.4e-11 Score=101.60 Aligned_cols=98 Identities=9% Similarity=0.099 Sum_probs=79.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------CCcc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I------PPAD 255 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~------p~~D 255 (360)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++++++.+|+.+. . ..||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 4568999999999999999999988 889999999 888877763 46799999998652 1 4699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
+|++.. +......+++++.++|+| ||.|++.+...+
T Consensus 143 ~v~~~~-----~~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDA-----DKANTDLYYEESLKLLRE---GGLIAVDNVLRR 178 (225)
T ss_dssp EEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred EEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 998643 234456789999999999 888888776654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=105.53 Aligned_cols=97 Identities=15% Similarity=0.253 Sum_probs=77.2
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC--CccEEEeccccc
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ---YIP--PADAYFFKLVFH 264 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~---~~p--~~D~i~~~~~lh 264 (360)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+|++++.+|..+ ..+ .||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4999999999999999999999999999999 999887763 4789999999865 233 599999854444
Q ss_pred cCChhH--HHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 265 AFGDED--CLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 265 ~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
...... ...+++.++++|+| ||.+++...
T Consensus 171 ~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~~ 201 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAP---GGLYVANCG 201 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCC---CcEEEEEec
Confidence 322221 15789999999999 887776554
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=105.12 Aligned_cols=101 Identities=14% Similarity=0.255 Sum_probs=81.3
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---C
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---P 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---p 252 (360)
.++..+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++ ..+++++.+|+.+.. .
T Consensus 66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 3444444 56788999999999999999999877 478999999 888887764 356999999997732 3
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
.||+|++..++|+++ +++.+.|+| ||++++....
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~~~ 177 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPINL 177 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEBCB
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEECC
Confidence 599999999999887 356778999 8998887543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.9e-10 Score=100.19 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=72.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec--hHHHhcCCC------------C----CCeEEEeCCCCCC---C-
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL--PHAVANMPQ------------T----ENLKYIAGDMFQY---I- 251 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~------------~----~ri~~~~~D~~~~---~- 251 (360)
.+..+|||||||+|.++..+++. ...+++++|+ +.+++.++. . +++++...|..+. .
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 46679999999999999988875 3348999999 566655432 1 4788886665431 1
Q ss_pred -----CCccEEEeccccccCChhHHHHHHHHHHHhcc---CCCCCcEEEEE
Q 018116 252 -----PPADAYFFKLVFHAFGDEDCLKILKKCREAIA---GNGERGKVLIM 294 (360)
Q Consensus 252 -----p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~---p~~~gG~lli~ 294 (360)
..||+|++..++||.++ ...+++.++++|+ | ++||+++++
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p-~~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPAN-DPTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCC-CCCCEEEEE
Confidence 35999999999987554 5678999999999 6 347887663
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-10 Score=102.27 Aligned_cols=93 Identities=15% Similarity=0.210 Sum_probs=78.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CccEEEeccccccCCh
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGD 268 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~ 268 (360)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.+..+|+.. +.+ .||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4678999999999999999999988899999999 888888765 5679999999876 443 59999986553
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
..+++++++|+| ||++++..+..
T Consensus 159 ----~~l~~~~~~L~p---gG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKP---GGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEE---EEEEEEEEECT
T ss_pred ----hhHHHHHHhcCC---CcEEEEEEcCH
Confidence 248899999999 99999987654
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-10 Score=100.97 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=86.4
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeC-CCC----CCCC--Ccc
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAG-DMF----QYIP--PAD 255 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~-D~~----~~~p--~~D 255 (360)
++..+. ......+|||||||+|.++..+++. ...+++++|+ +.+++.+.+ ..++..... ++. .+.+ .+|
T Consensus 28 ~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 105 (232)
T 3opn_A 28 ALKEFH-LEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPS 105 (232)
T ss_dssp HHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCS
T ss_pred HHHHcC-CCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCC
Confidence 344444 1234679999999999999999987 3349999999 888776543 344333211 111 1111 145
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc-cCCcccCHHHHHH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS-VDGKERTDEEWKT 334 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g~~~t~~e~~~ 334 (360)
.+.+-.++.++ .++|++++++|+| ||++++.. .+. +........-.-... ......+.+++.+
T Consensus 106 ~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~~--~p~------~e~~~~~~~~~G~~~d~~~~~~~~~~l~~ 169 (232)
T 3opn_A 106 FTSIDVSFISL-----DLILPPLYEILEK---NGEVAALI--KPQ------FEAGREQVGKNGIIRDPKVHQMTIEKVLK 169 (232)
T ss_dssp EEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CHH------HHSCHHHHC-CCCCCCHHHHHHHHHHHHH
T ss_pred EEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEEE--Ccc------cccCHHHhCcCCeecCcchhHHHHHHHHH
Confidence 54444444433 4689999999999 99998843 110 100000000000000 0001237789999
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
+++++||++..+...
T Consensus 170 ~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 170 TATQLGFSVKGLTFS 184 (232)
T ss_dssp HHHHHTEEEEEEEEC
T ss_pred HHHHCCCEEEEEEEc
Confidence 999999998887654
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=108.18 Aligned_cols=101 Identities=12% Similarity=0.083 Sum_probs=79.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~l 263 (360)
..+..+|||||||+|.++..++++ ...+++++|...+++.+++ .++++++.+|+.+ +.+ .||+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 456789999999999999999987 3349999999766666553 4779999999977 454 69999997766
Q ss_pred ccCCh-hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 264 HAFGD-EDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 264 h~~~~-~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
|++.. .....+++.+.++|+| ||.+++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCC---CeEEEEecCe
Confidence 66543 3456789999999999 8888765543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-10 Score=105.63 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=78.7
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------------CCCeEEEe
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ-----------------TENLKYIA 244 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~ri~~~~ 244 (360)
.++..+. ..++.+|||||||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.
T Consensus 96 ~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 96 MILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 3455555 667889999999999999999998 47789999999 888877653 26899999
Q ss_pred CCCCCC---CC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 245 GDMFQY---IP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 245 ~D~~~~---~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+|+.+. ++ .||+|++.. +++ ..+++++.++|+| ||++++....
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~Lkp---gG~lv~~~~~ 221 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLKH---GGVCAVYVVN 221 (336)
T ss_dssp SCTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEEE---EEEEEEEESS
T ss_pred CChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcCC---CcEEEEEeCC
Confidence 999773 33 499999743 222 1368999999999 9999877653
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-10 Score=101.60 Aligned_cols=94 Identities=20% Similarity=0.347 Sum_probs=73.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------------CCCeEEEeCCCCCC----CC-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------------TENLKYIAGDMFQY----IP- 252 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~ri~~~~~D~~~~----~p- 252 (360)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+. ++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34678999999999999999999999999999999 888765531 25799999999762 22
Q ss_pred -CccEEEeccccccCChhHH-----------HHHHHHHHHhccCCCCCcEEEEE
Q 018116 253 -PADAYFFKLVFHAFGDEDC-----------LKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~-----------~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.+|.|++. ++++.. ..+++++.++|+| ||.|++.
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI 172 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence 47777643 343321 3789999999999 8988884
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-10 Score=95.38 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=72.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCC-------CCccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYI-------PPADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~-------p~~D~i~~~~ 261 (360)
+..+|||+|||+|.++..+++..+. ++++|+ +.+++.+++ ..+++++.+|+.+.. ..||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 6789999999999999999998654 999999 888887764 228999999986621 1599999987
Q ss_pred ccccCChhHHHHHHHHHH--HhccCCCCCcEEEEEeee
Q 018116 262 VFHAFGDEDCLKILKKCR--EAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~--~~L~p~~~gG~lli~e~~ 297 (360)
.+| -..+ .+++.+. ++|+| ||.+++....
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~---gG~~~~~~~~ 149 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEA---GGLYVLQHPK 149 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEE---EEEEEEEEET
T ss_pred CCc-hhHH---HHHHHHHhhcccCC---CcEEEEEeCC
Confidence 776 2222 3455555 99999 8888775543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-10 Score=103.49 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=75.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
..+..+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +.+ .||+|++..+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 456789999999999999998887 4569999999447776653 3789999999987 555 5999998774
Q ss_pred cccC-ChhHHHHHHHHHHHhccCCCCCcEEE
Q 018116 263 FHAF-GDEDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 263 lh~~-~~~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
.+.+ .......+|+++.++|+| ||.++
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAK---GGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence 3332 233456789999999999 88876
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-10 Score=106.14 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=75.9
Q ss_pred CCCCEEEEeCCC------CchHHHHHHHH-CCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CC--------CCccE
Q 018116 194 EGLGSIVDVGGG------NGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YI--------PPADA 256 (360)
Q Consensus 194 ~~~~~iLDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~--------p~~D~ 256 (360)
.+..+||||||| +|..+..++++ +|+.+++++|+ +.+.. ..++++|+.+|+.+ ++ ..||+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhhhhcccCCccE
Confidence 456899999999 77777777765 59999999999 77632 36799999999977 32 35999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 257 YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
|++. ..|+++ +..+.|++++++|+| ||.+++.|..
T Consensus 292 Visd-gsH~~~--d~~~aL~el~rvLKP---GGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDD-GSHINA--HVRTSFAALFPHVRP---GGLYVIEDMW 326 (419)
T ss_dssp EEEC-SCCCHH--HHHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred EEEC-Ccccch--hHHHHHHHHHHhcCC---CeEEEEEecc
Confidence 9986 456554 356889999999999 8988888765
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.6e-10 Score=97.76 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=78.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C---------
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--Y-I--------- 251 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~-~--------- 251 (360)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|+.+ + .
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 34678999999999999999999987 789999999 888877663 2569999999755 1 1
Q ss_pred --------CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 252 --------PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 252 --------p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
..||+|++... .+....+++++.+.|+| ||.+++.+...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 184 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKP---GGLLIADNVLW 184 (239)
T ss_dssp GTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSG
T ss_pred cccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCC---CeEEEEEcccc
Confidence 45999998643 33456789999999999 88888866544
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.05 E-value=4.3e-10 Score=103.36 Aligned_cols=96 Identities=13% Similarity=0.165 Sum_probs=75.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
..+..+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +.| .||+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 345689999999999999988876 5569999999557766553 4689999999987 454 5999999866
Q ss_pred cccCC-hhHHHHHHHHHHHhccCCCCCcEEE
Q 018116 263 FHAFG-DEDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 263 lh~~~-~~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
.+++. ......+++.+.++|+| ||.++
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 142 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVE---GGLIF 142 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred hhhcccHHHHHHHHHHHHhhcCC---CeEEE
Confidence 55543 33456789999999999 88876
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.6e-10 Score=94.69 Aligned_cols=95 Identities=7% Similarity=0.002 Sum_probs=78.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~ 265 (360)
..+.+|||||||+|-++..+. |..+++++|+ +.+++.++. ..+..+...|... +.+ .||++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 567899999999999998877 8999999999 999988764 5778899999987 444 5999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+.+++....+ ++.+.|++ ++++|.-+
T Consensus 181 LE~q~~~~~~-~ll~aL~~----~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNT----PRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBC----SEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcC----CCEEEEcC
Confidence 9887766556 88889999 45555443
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.4e-10 Score=94.91 Aligned_cols=98 Identities=13% Similarity=0.049 Sum_probs=75.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-------CCCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-------IPPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-------~p~~D~i~ 258 (360)
.+..+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ .++++++.+|+.+. ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 4678999999999999998887 45679999999 889887764 25799999998762 23699999
Q ss_pred eccccccCChhHHHHHHHHH--HHhccCCCCCcEEEEEeeec
Q 018116 259 FKLVFHAFGDEDCLKILKKC--REAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~--~~~L~p~~~gG~lli~e~~~ 298 (360)
+...++....+ ..++.+ .++|+| ||.+++.....
T Consensus 122 ~~~~~~~~~~~---~~~~~l~~~~~L~~---gG~l~~~~~~~ 157 (187)
T 2fhp_A 122 LDPPYAKQEIV---SQLEKMLERQLLTN---EAVIVCETDKT 157 (187)
T ss_dssp ECCCGGGCCHH---HHHHHHHHTTCEEE---EEEEEEEEETT
T ss_pred ECCCCCchhHH---HHHHHHHHhcccCC---CCEEEEEeCCc
Confidence 98775533333 445555 788999 88887765443
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-10 Score=98.81 Aligned_cols=98 Identities=10% Similarity=0.169 Sum_probs=78.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------CCc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I------PPA 254 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~------p~~ 254 (360)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|+.+. . ..|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 45678999999999999999999887 789999999 888877653 36899999998551 1 469
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
|+|++... ......+++++.++|+| ||.+++.+...
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRP---GGILAVLRVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEECCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEECCCc
Confidence 99998533 33456789999999999 88888766544
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-10 Score=99.24 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=77.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CC-CCccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--YI-PPADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~~-p~~D~i~~~~ 261 (360)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++++++.+|..+ +. ++||+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 3568999999999999999999988 889999999 888887763 3579999999865 22 2399998753
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
. ......+++++.++|+| ||.+++.+...
T Consensus 135 ~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~ 163 (210)
T 3c3p_A 135 D-----VFNGADVLERMNRCLAK---NALLIAVNALR 163 (210)
T ss_dssp T-----TSCHHHHHHHHGGGEEE---EEEEEEESSSS
T ss_pred C-----hhhhHHHHHHHHHhcCC---CeEEEEECccc
Confidence 2 23356789999999999 88887755544
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-10 Score=99.58 Aligned_cols=94 Identities=9% Similarity=0.154 Sum_probs=74.9
Q ss_pred CEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCC---CC--CCccEEEecc
Q 018116 197 GSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------T-ENLKYIAGDMFQ---YI--PPADAYFFKL 261 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~-~ri~~~~~D~~~---~~--p~~D~i~~~~ 261 (360)
.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ . ++++++.+|..+ .. ..||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 4999999999999999999885 889999999 888887763 3 689999999865 23 2599998754
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
.. .....+++++.+.|+| ||.|++.+...
T Consensus 138 ~~-----~~~~~~l~~~~~~Lkp---GG~lv~dn~~~ 166 (221)
T 3dr5_A 138 SP-----MDLKALVDAAWPLLRR---GGALVLADALL 166 (221)
T ss_dssp CT-----TTHHHHHHHHHHHEEE---EEEEEETTTTG
T ss_pred cH-----HHHHHHHHHHHHHcCC---CcEEEEeCCCC
Confidence 32 2345689999999999 78777744443
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-10 Score=96.25 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=75.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C-CCccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I-PPADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~-p~~D~i~~~~ 261 (360)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+. . ..||+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 45689999999999999999987 6679999999 888887763 25799999998762 2 3599999876
Q ss_pred ccccCChhHHHHHHHHHH--HhccCCCCCcEEEEEeeec
Q 018116 262 VFHAFGDEDCLKILKKCR--EAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~--~~L~p~~~gG~lli~e~~~ 298 (360)
.++. .....+++.+. ++|+| ||.+++.....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~~~ 141 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSE---QVMVVCETDKT 141 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEETT
T ss_pred CCCc---chHHHHHHHHHhCCCcCC---CcEEEEEECCc
Confidence 6542 22345667776 88999 88887765543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.01 E-value=3e-10 Score=96.88 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------C--CCeEEEeCCCCC--CC---CC-ccEEEe
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------T--ENLKYIAGDMFQ--YI---PP-ADAYFF 259 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~ri~~~~~D~~~--~~---p~-~D~i~~ 259 (360)
+..+|||+|||+|.++..++.+. ..+++++|+ +.+++.+++ . ++++++.+|+.+ +. .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 46799999999999999877763 358999999 899887764 2 689999999865 21 36 999999
Q ss_pred ccccccCChhHHHHHHHHH--HHhccCCCCCcEEEEEeeec
Q 018116 260 KLVFHAFGDEDCLKILKKC--REAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~--~~~L~p~~~gG~lli~e~~~ 298 (360)
...+| .. ....+++.+ .++|+| ||.+++.....
T Consensus 132 ~~~~~-~~--~~~~~l~~~~~~~~Lkp---gG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-FN--LAEQAISLLCENNWLKP---NALIYVETEKD 166 (201)
T ss_dssp CCCSS-SC--HHHHHHHHHHHTTCEEE---EEEEEEEEESS
T ss_pred CCCCC-Cc--cHHHHHHHHHhcCccCC---CcEEEEEECCC
Confidence 87754 33 345678888 567999 88887765543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=92.47 Aligned_cols=97 Identities=21% Similarity=0.294 Sum_probs=73.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC---------CeEEEeechHHHhcCCCCCCeEEE-eCCCCCC---------CC-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG---------IKCTVLDLPHAVANMPQTENLKYI-AGDMFQY---------IP- 252 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~ri~~~-~~D~~~~---------~p- 252 (360)
+.+..+|||||||+|.++..+++.++. .+++++|+.++. ...+++++ .+|+... .+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEVLPG 95 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence 356789999999999999999999865 899999994421 13578999 9998762 22
Q ss_pred -CccEEEecccccc----CChhH-----HHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 253 -PADAYFFKLVFHA----FGDED-----CLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 253 -~~D~i~~~~~lh~----~~~~~-----~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.||+|++...+|. ..+.. ..++++++.++|+| ||++++...
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 146 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW 146 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence 5999998654432 22221 14789999999999 899888654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.3e-10 Score=98.49 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=78.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C-------CC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--Y-I-------PP 253 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~-~-------p~ 253 (360)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|..+ + . ..
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34678999999999999999999988 789999999 888877663 3689999999865 2 2 35
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
||+|++... ......+++++.++|+| ||.|++-+...
T Consensus 157 fD~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~ 193 (247)
T 1sui_A 157 YDFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYDNTLW 193 (247)
T ss_dssp BSEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEECTTG
T ss_pred EEEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEecCCc
Confidence 999997543 23356789999999999 88887765444
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=94.09 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=77.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-----CCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCC----
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-----PGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQYI---- 251 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~~---- 251 (360)
..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999986 5789999999 888877763 258999999987743
Q ss_pred ---CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 252 ---PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 252 ---p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
..||+|++...++++. +++.+.|+| ||++++.-..
T Consensus 158 ~~~~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASELP--------EILVDLLAE---NGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSCC--------HHHHHHEEE---EEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHHH--------HHHHHhcCC---CcEEEEEEcc
Confidence 2599999999988653 567888999 8988886543
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=98.96 Aligned_cols=103 Identities=12% Similarity=0.141 Sum_probs=78.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C-CC-CccEEEec-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y-IP-PADAYFFK- 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~-~p-~~D~i~~~- 260 (360)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|+.+ + .+ .||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56778999999999999999999875 589999999 888877664 3479999999876 2 23 59999983
Q ss_pred -----ccccc-------CChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 261 -----LVFHA-------FGDED-------CLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 261 -----~~lh~-------~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
.++++ |+.++ ..++|+++.+.|+| ||++++.....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCCC
Confidence 23332 22222 15899999999999 89888866543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-10 Score=112.90 Aligned_cols=103 Identities=16% Similarity=0.217 Sum_probs=83.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C--CCeEEEeCCCCC---CC-C-CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----T--ENLKYIAGDMFQ---YI-P-PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~ri~~~~~D~~~---~~-p-~~D~i~~~ 260 (360)
+..+.+|||||||.|.++..+++. +.+|+|+|. +.+++.|+. . -+|+|.++++.+ .. + .||+|++.
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 141 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL 141 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence 345689999999999999999997 889999999 888887763 2 469999999865 22 2 59999999
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
.+|||.++++...-+.++.+.|++ +++.+++..+..+
T Consensus 142 e~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~~e 178 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAVKE 178 (569)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCCTT
T ss_pred cchhcCCCHHHHHHHHHHHHHhcc---ccceeeEEecccc
Confidence 999999988755566677788888 7777777665544
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.5e-11 Score=103.40 Aligned_cols=137 Identities=14% Similarity=0.154 Sum_probs=97.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC-CCccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YI-PPADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~-p~~D~i~~~~~l 263 (360)
.+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +. ..||+|++...+
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCc
Confidence 36789999999999999999987 489999999 888887764 1589999999977 32 369999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCce
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
|+.++.. ..+.+++++|+| ||.+++ +.... ...+.... --+....+++..++...|...
T Consensus 155 ~~~~~~~--~~~~~~~~~L~p---gG~~i~-~~~~~------------~~~~~~~~---lp~~~~~~~~~~~l~~~g~~~ 213 (241)
T 3gdh_A 155 GGPDYAT--AETFDIRTMMSP---DGFEIF-RLSKK------------ITNNIVYF---LPRNADIDQVASLAGPGGQVE 213 (241)
T ss_dssp SSGGGGG--SSSBCTTTSCSS---CHHHHH-HHHHH------------HCSCEEEE---EETTBCHHHHHHTTCTTCCEE
T ss_pred CCcchhh--hHHHHHHhhcCC---cceeHH-HHHHh------------hCCceEEE---CCCCCCHHHHHHHhccCCCEE
Confidence 9876653 357788999999 887544 21110 00000000 012336778888888888766
Q ss_pred eEEEeeCCce
Q 018116 344 YKITNVFGLK 353 (360)
Q Consensus 344 ~~~~~~~~~~ 353 (360)
+......+..
T Consensus 214 i~~~~~~~~~ 223 (241)
T 3gdh_A 214 IEQNFLNNKL 223 (241)
T ss_dssp EEEEEETTEE
T ss_pred EEehhhcCcc
Confidence 6666555543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.00 E-value=6e-10 Score=94.18 Aligned_cols=102 Identities=16% Similarity=0.336 Sum_probs=74.3
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCC------------
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYI------------ 251 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~~------------ 251 (360)
.+.+.+. .+.++.+|||+|||+|.++..++++ ..+++++|+.++ ....+++++.+|+.+..
T Consensus 15 ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 15 FLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp HHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred HHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhcc
Confidence 4455554 2457789999999999999999988 789999999432 12468999999997732
Q ss_pred --CCccEEEecccccc---CC-h-----hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 252 --PPADAYFFKLVFHA---FG-D-----EDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 252 --p~~D~i~~~~~lh~---~~-~-----~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
..||+|++...... +. + +.+..+|+.+.++|+| ||++++..
T Consensus 88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~ 139 (191)
T 3dou_A 88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQ 139 (191)
T ss_dssp TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 36999998532211 11 1 2245789999999999 88887644
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.00 E-value=5e-10 Score=97.25 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=75.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC------CCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCCC--
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP------GIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQYIP-- 252 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~~p-- 252 (360)
..+..+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|....++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45678999999999999999998765 369999999 888887764 2589999999977443
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.||+|++...++++. +++.+.|+| ||++++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence 599999999998766 467888999 89888754
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=97.24 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=71.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC--CC------CeEEE--eCCCCC-CCCCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ--TE------NLKYI--AGDMFQ-YIPPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------ri~~~--~~D~~~-~~p~~D~i~~~~ 261 (360)
+.++.+|||||||+|.++..+++. .+++++|+.+++..+.. .. ++.++ .+|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 457789999999999999999887 68999999446443322 11 68999 999976 323699999976
Q ss_pred ccccCChh----H-HHHHHHHHHHhccCCCCCc--EEEEEeee
Q 018116 262 VFHAFGDE----D-CLKILKKCREAIAGNGERG--KVLIMDIV 297 (360)
Q Consensus 262 ~lh~~~~~----~-~~~~L~~~~~~L~p~~~gG--~lli~e~~ 297 (360)
. ++.+.. . ...+|+.+.++|+| || .+++-...
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv~~ 187 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKVLC 187 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEESC
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEeCC
Confidence 6 443221 1 12479999999999 89 77774443
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=97.72 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=71.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC--CC------CeEEE--eCCCCC-CCCCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ--TE------NLKYI--AGDMFQ-YIPPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------ri~~~--~~D~~~-~~p~~D~i~~~~ 261 (360)
+.++.+|||||||+|.++..++++ .+++++|+.++...+++ .. ++.++ .+|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 456789999999999999999987 58999999446443322 11 78999 999876 323699999976
Q ss_pred ccccCChh----H-HHHHHHHHHHhccCCCCCc--EEEEEee
Q 018116 262 VFHAFGDE----D-CLKILKKCREAIAGNGERG--KVLIMDI 296 (360)
Q Consensus 262 ~lh~~~~~----~-~~~~L~~~~~~L~p~~~gG--~lli~e~ 296 (360)
. ++.+.. . ..++|+.+.++|+| || .+++...
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~~ 194 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKVL 194 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEES
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEeC
Confidence 6 433221 1 12479999999999 99 8777443
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=95.71 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=77.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C-------CC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--Y-I-------PP 253 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~-~-------p~ 253 (360)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++++++.+|..+ + . ..
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 34678999999999999999999988 789999999 888877653 3589999999865 2 2 35
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
||+|++.. +......+++++.+.|+| ||.|++-+..
T Consensus 148 fD~I~~d~-----~~~~~~~~l~~~~~~L~p---GG~lv~d~~~ 183 (237)
T 3c3y_A 148 YDFGFVDA-----DKPNYIKYHERLMKLVKV---GGIVAYDNTL 183 (237)
T ss_dssp EEEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECTT
T ss_pred cCEEEECC-----chHHHHHHHHHHHHhcCC---CeEEEEecCC
Confidence 99998753 234457899999999999 7777665443
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-09 Score=93.26 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=75.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCC---CCccE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQYI---PPADA 256 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~~---p~~D~ 256 (360)
..+..+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ .++++++.+|+.... ..||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3567899999999999999999885 6679999999 888877653 248999999987532 25999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 257 YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
|++...++++. +++.+.|+| ||++++...
T Consensus 155 i~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKP---GGRLILPVG 183 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEE---EEEEEEEES
T ss_pred EEECCchHHHH--------HHHHHhcCC---CcEEEEEEe
Confidence 99998887654 467889999 898888654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-09 Score=98.36 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=69.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-----hHHHhcCCC----CCCeEEEeC-CCCC-CCCCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-----PHAVANMPQ----TENLKYIAG-DMFQ-YIPPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~----~~ri~~~~~-D~~~-~~p~~D~i~~~~ 261 (360)
+.++.+|||||||+|.++..++++ .+++++|. +..++.... .+++.++.+ |+.. +...||+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 456789999999999999999987 47999998 434433321 267999999 9876 344699999966
Q ss_pred ccc---cCChhH-HHHHHHHHHHhccCCCCCcEEEE
Q 018116 262 VFH---AFGDED-CLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 262 ~lh---~~~~~~-~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.++ +..+.. ...+|+.+.++|+| ||.+++
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~ 189 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV 189 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE
Confidence 543 222222 22689999999999 897766
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.3e-10 Score=97.05 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=78.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CC------CCcc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ---YI------PPAD 255 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~---~~------p~~D 255 (360)
.+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|+.+ .. ..||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 4567999999999999999999987 789999999 888887763 3579999999754 11 4699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
+|++... .+....+++++.+.|+| ||.|++.+....
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~~ 186 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVIDNVLWH 186 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEECTTGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEeCCCcC
Confidence 9987543 34456789999999999 888877665543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-09 Score=99.21 Aligned_cols=108 Identities=13% Similarity=0.129 Sum_probs=82.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC--
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YI-- 251 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~-- 251 (360)
..++.... +.+..+|||+|||+|.+++.++... |+.+++++|+ +.+++.+++ .+++++..+|+.+ +.
T Consensus 193 ~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 193 QALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 34444445 5677899999999999999999987 8899999999 999887764 2389999999987 32
Q ss_pred CCccEEEeccccccC-C-hhH----HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 252 PPADAYFFKLVFHAF-G-DED----CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 252 p~~D~i~~~~~lh~~-~-~~~----~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+.||+|++.-..+.. . ..+ ...+++++++.|+| ||+++++.
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t 317 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLT 317 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEE
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 358999985443321 1 111 25789999999999 99998854
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.94 E-value=3e-09 Score=93.41 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=79.3
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-C--C
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYI-P--P 253 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~-p--~ 253 (360)
++..++ ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.+++ .+++++..+|+.+.. + .
T Consensus 83 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 83 IALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 444444 567889999999999999999998 789999999 888877663 268999999998754 3 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
||+|++. .++. ..+++++.++|+| ||++++....
T Consensus 159 ~D~v~~~-----~~~~--~~~l~~~~~~L~~---gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAAFVD-----VREP--WHYLEKVHKSLME---GAPVGFLLPT 192 (248)
T ss_dssp BSEEEEC-----SSCG--GGGHHHHHHHBCT---TCEEEEEESS
T ss_pred ccEEEEC-----CcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence 9999972 3332 3679999999999 9999987753
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-09 Score=96.19 Aligned_cols=102 Identities=11% Similarity=0.209 Sum_probs=80.6
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CC
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQ-YI 251 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~-~~ 251 (360)
.++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+ +.
T Consensus 90 ~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 90 QIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 4455555 667889999999999999999996 57889999999 888876653 2589999999977 34
Q ss_pred C--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 252 P--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 252 p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+ .||+|++ +.++. ..+|+++.++|+| ||++++....
T Consensus 168 ~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~ 205 (280)
T 1i9g_A 168 PDGSVDRAVL-----DMLAP--WEVLDAVSRLLVA---GGVLMVYVAT 205 (280)
T ss_dssp CTTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESS
T ss_pred CCCceeEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCC
Confidence 3 5999997 23333 2679999999999 9999987653
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=8.5e-10 Score=99.18 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=76.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC----CCCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQY----IPPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~----~p~~D~i~ 258 (360)
....+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+. ...||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998878889999999 888876542 36899999998652 23599999
Q ss_pred eccccccCChhHH--HHHHHHHHHhccCCCCCcEEEEE
Q 018116 259 FKLVFHAFGDEDC--LKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 259 ~~~~lh~~~~~~~--~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+....+..+.... .+++++++++|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 8544333233222 5899999999999 8888775
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-09 Score=95.51 Aligned_cols=98 Identities=20% Similarity=0.176 Sum_probs=80.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC-C-CCccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY-I-PPADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~-~-p~~D~i~~~~~l 263 (360)
+.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.+++ ..++.++.+|+.+. . ..||+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999999 999887764 35789999999764 2 259999886543
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
...++++++.+.|+| ||.+++.+....
T Consensus 197 ------~~~~~l~~~~~~Lkp---gG~l~~s~~~~~ 223 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKD---RGVIHYHETVAE 223 (272)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEEEEEEG
T ss_pred ------cHHHHHHHHHHHcCC---CCEEEEEEcCcc
Confidence 234679999999999 898888776543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.93 E-value=9.6e-10 Score=98.94 Aligned_cols=101 Identities=20% Similarity=0.298 Sum_probs=75.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIPP 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p~ 253 (360)
..+++.++ ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 18 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 18 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 34455555 567789999999999999999998 458999999 888876653 2589999999987 6778
Q ss_pred ccEEEeccccccCChhHHHHHHH--------------HH--HHhccCCCCCcEE
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILK--------------KC--REAIAGNGERGKV 291 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~--------------~~--~~~L~p~~~gG~l 291 (360)
||+|+++ ..++++.+....+|. ++ +++++| ||++
T Consensus 94 fD~vv~n-lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP---Gg~~ 143 (285)
T 1zq9_A 94 FDTCVAN-LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP---GDKL 143 (285)
T ss_dssp CSEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT---TCTT
T ss_pred hcEEEEe-cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC---CCcc
Confidence 9998884 444466555555553 22 357899 8865
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=91.94 Aligned_cols=96 Identities=11% Similarity=0.171 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--CC--CCccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ--YI--PPADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~--~~--p~~D~i~~~~~l 263 (360)
+..+|||+|||+|.++..++++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +. ..||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 467999999999999998877642 48999999 999888764 2589999999866 32 259999987765
Q ss_pred ccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeee
Q 018116 264 HAFGDEDCLKILKKCRE--AIAGNGERGKVLIMDIV 297 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~e~~ 297 (360)
| .. ....+++.+.+ +|+| ||.+++....
T Consensus 133 ~-~~--~~~~~l~~l~~~~~L~p---gG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RG--LLEETINLLEDNGWLAD---EALIYVESEV 162 (202)
T ss_dssp S-TT--THHHHHHHHHHTTCEEE---EEEEEEEEEG
T ss_pred C-CC--cHHHHHHHHHhcCccCC---CcEEEEEECC
Confidence 4 32 23466777766 4999 8888765543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-09 Score=100.12 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=78.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCC----CCCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQY----IPPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~----~p~~D~i 257 (360)
....+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. ...||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999878889999999 888876542 36899999998662 2359999
Q ss_pred Eecccccc---CChhH--HHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 258 FFKLVFHA---FGDED--CLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 258 ~~~~~lh~---~~~~~--~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
++....|. -+... ..+++++++++|+| ||.+++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEcc
Confidence 99765543 11111 25789999999999 888887643
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-09 Score=98.60 Aligned_cols=98 Identities=13% Similarity=0.170 Sum_probs=74.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC----------------CCCCeEEEeCCCCCC---CCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP----------------QTENLKYIAGDMFQY---IPP 253 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~ri~~~~~D~~~~---~p~ 253 (360)
....+|||||||+|.++..+++. |..+++++|+ +.+++.++ ..++++++.+|..+. ...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 45689999999999999999988 8889999999 88877543 246899999997552 235
Q ss_pred ccEEEeccccccCChhH--HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 254 ADAYFFKLVFHAFGDED--CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
||+|++....+..+... ..+++++++++|+| ||.+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEEc
Confidence 99999855433222222 25789999999999 88777753
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.91 E-value=9.8e-10 Score=98.35 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=75.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---C-CCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQY---I-PPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~---~-p~~D~i~ 258 (360)
....+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+. . ..||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3568999999999999999998777789999999 888876542 47999999998652 2 3599999
Q ss_pred eccccccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 018116 259 FKLVFHAFGDED--CLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 259 ~~~~lh~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+....+..+... ...++++++++|+| ||.+++.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~ 188 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 854433222111 14689999999999 7877764
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-09 Score=100.45 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=76.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CC--CCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---YI--PPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~~--p~~D~i 257 (360)
....+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+ .. ..||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999999 888887653 3689999999865 22 259999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 018116 258 FFKLVFHAFGDED--CLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 258 ~~~~~lh~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
++....+..+.+. ...++++++++|+| ||.|++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9854321111111 36899999999999 8877774
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.91 E-value=9.7e-10 Score=100.10 Aligned_cols=98 Identities=16% Similarity=0.248 Sum_probs=72.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC----CCCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQY----IPPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~----~p~~D~i~ 258 (360)
....+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+. ...||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3568999999999999999999878899999999 888876542 36899999998662 23599999
Q ss_pred eccccccCChh-HH--HHHHHHHHHhccCCCCCcEEEEEe
Q 018116 259 FKLVFHAFGDE-DC--LKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 259 ~~~~lh~~~~~-~~--~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+... +++... .. ..++++++++|+| ||.+++..
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~~ 222 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKE---DGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEE---EEEEEEEC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCC---CeEEEEEC
Confidence 8543 333222 21 6889999999999 78777643
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=99.83 Aligned_cols=97 Identities=13% Similarity=0.233 Sum_probs=75.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---C-CCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQY---I-PPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~---~-p~~D~i~ 258 (360)
....+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. . ..||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999998878899999999 888876542 36899999998652 2 3599999
Q ss_pred eccccccCC-hhHH--HHHHHHHHHhccCCCCCcEEEEE
Q 018116 259 FKLVFHAFG-DEDC--LKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 259 ~~~~lh~~~-~~~~--~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+... +.+. .+.. .+++++++++|+| ||.+++.
T Consensus 195 ~d~~-~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 229 (321)
T 2pt6_A 195 VDSS-DPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 229 (321)
T ss_dssp EECC-CSSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCc-CCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 8543 2222 2221 5889999999999 7877764
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-09 Score=99.16 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=74.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC--C-C-CCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ--Y-I-PPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~--~-~-p~~D~i~ 258 (360)
....+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+ + . ..||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999999 888876653 4789999999865 1 2 3599999
Q ss_pred eccccccCChh--HHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 259 FKLVFHAFGDE--DCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 259 ~~~~lh~~~~~--~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+....+..+.. ...+++++++++|+| ||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence 85443322211 124689999999999 88777654
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.5e-09 Score=97.02 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=70.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEecccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~ 265 (360)
++++|||||||+|.++...+++ ...+++++|..++++.|++ .++|+++.+|+.+ +.| .+|+|++-.+-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 5689999999999998766665 3458999998556666553 6889999999987 566 6999998544333
Q ss_pred CCh-hHHHHHHHHHHHhccCCCCCcEEE
Q 018116 266 FGD-EDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 266 ~~~-~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
+.. .....++....++|+| ||.++
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp---~G~~i 186 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKE---GGLLL 186 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEE---EEEEE
T ss_pred ccccchhhhHHHHHHhhCCC---CceEC
Confidence 332 2456778888899999 77765
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-08 Score=85.93 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=70.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCCccEEEeccccccCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIPPADAYFFKLVFHAFG 267 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~ 267 (360)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++. .-+++++.+|+.+-...||+|++.-.+|...
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 457899999999999999998873 348999999 888887764 1279999999876323799999998888876
Q ss_pred hhHHHHHHHHHHHhc
Q 018116 268 DEDCLKILKKCREAI 282 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L 282 (360)
.....++++++.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 555567888888776
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.85 E-value=3.7e-09 Score=89.74 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=66.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCCCccEEEeccccccCChhHH
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDC 271 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~ 271 (360)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+-...||+|++...+|++++...
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~ 128 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 128 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence 46689999999999999999887 5557999999 889887764 23899999998763246999999999999876544
Q ss_pred HHHHHHHHHhc
Q 018116 272 LKILKKCREAI 282 (360)
Q Consensus 272 ~~~L~~~~~~L 282 (360)
.++++++.+.+
T Consensus 129 ~~~l~~~~~~~ 139 (200)
T 1ne2_A 129 RAFIDKAFETS 139 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHhc
Confidence 57788887765
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.84 E-value=5.8e-09 Score=92.50 Aligned_cols=89 Identities=9% Similarity=0.053 Sum_probs=73.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCCCCCccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQYIPPADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~~p~~D~i~~~~~ 262 (360)
....+|||||||+|.++..+++. + .+++++|+ +.+++.+++ .+|++++.+|..+....||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 35689999999999999999988 7 89999999 999998874 358999999987633569999975
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.+++. .+++.++++|+| ||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~p---gG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLKE---DGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcCC---CcEEEEE
Confidence 23432 489999999999 8887774
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.5e-09 Score=94.63 Aligned_cols=97 Identities=13% Similarity=0.255 Sum_probs=70.7
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p~~ 254 (360)
..+++... ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.|
T Consensus 32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 34445454 567789999999999999999987 569999999 888877653 3689999999987 56689
Q ss_pred cEEEeccccccCChhHHHHHH---------------HHHHHhccC
Q 018116 255 DAYFFKLVFHAFGDEDCLKIL---------------KKCREAIAG 284 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L---------------~~~~~~L~p 284 (360)
|+|++. ..++++.+...++| ..+.+.+++
T Consensus 108 D~Vv~n-~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~ 151 (299)
T 2h1r_A 108 DVCTAN-IPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLAN 151 (299)
T ss_dssp SEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCC
T ss_pred CEEEEc-CCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcC
Confidence 999875 45557776666666 346677877
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.7e-09 Score=96.47 Aligned_cols=97 Identities=12% Similarity=0.179 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---C-CCccEEEe
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQY---I-PPADAYFF 259 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~---~-p~~D~i~~ 259 (360)
...+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. . ..||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 458999999999999999999878889999999 888876553 46899999997652 2 25999997
Q ss_pred ccccccCChh---HHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 260 KLVFHAFGDE---DCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 260 ~~~lh~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
...-+..... ...+++++++++|+| ||.+++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 4321101110 125789999999999 8877774
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-08 Score=90.47 Aligned_cols=120 Identities=14% Similarity=0.103 Sum_probs=89.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--CCCccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY--IPPADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~--~p~~D~i~~~~~ 262 (360)
..++.+|||+|||+|.+++.+++. ...+++++|+ |.+++.+++ .++++++.+|..+- ...||.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 467899999999999999999887 4578999999 988887763 67899999999773 235999987532
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCc
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 342 (360)
. ....+|..+.++|+| ||.|.+.+.+..+.. .....+.++++.++.|++
T Consensus 202 ~------~~~~~l~~a~~~lk~---gG~ih~~~~~~e~~~----------------------~~~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYD 250 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCE
T ss_pred C------cHHHHHHHHHHHcCC---CCEEEEEeeeccccc----------------------chhHHHHHHHHHHHcCCc
Confidence 1 124678888999999 888777665432211 112456777888899997
Q ss_pred ee
Q 018116 343 HY 344 (360)
Q Consensus 343 ~~ 344 (360)
+.
T Consensus 251 v~ 252 (278)
T 3k6r_A 251 VE 252 (278)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.81 E-value=7e-09 Score=92.75 Aligned_cols=104 Identities=10% Similarity=0.103 Sum_probs=77.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C------CCCccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y------IPPADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~------~p~~D~i 257 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ ..+++++.+|+.+ + ...||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999998876 89999999 888876653 3489999999866 2 2369999
Q ss_pred Eec------ccccc---CCh-------hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 258 FFK------LVFHA---FGD-------EDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 258 ~~~------~~lh~---~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
++. .+++. |+. +...++|+++.+.|+| ||++++......
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~~ 215 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSME 215 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCCC
Confidence 985 22221 111 1236789999999999 898888765543
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-08 Score=94.91 Aligned_cols=121 Identities=15% Similarity=0.125 Sum_probs=90.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
.+..+|||+|||+|.+++.++...+..+++++|+ +.+++.++. .+++++..+|+.+ +.+ .||+|++.-.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 5678999999999999999999877779999999 999988764 2589999999987 433 5999999654
Q ss_pred cccCC-----hhH-HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHH
Q 018116 263 FHAFG-----DED-CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLF 336 (360)
Q Consensus 263 lh~~~-----~~~-~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll 336 (360)
.+... .++ -.++++.+++.| + |+.+++ .. +.+.+.+.+
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l-~---g~~~~i-~~-------------------------------~~~~~~~~~ 339 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL-E---KRGVFI-TT-------------------------------EKKAIEEAI 339 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE-E---EEEEEE-ES-------------------------------CHHHHHHHH
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc-C---CeEEEE-EC-------------------------------CHHHHHHHH
Confidence 33211 111 257888999988 5 344433 21 345666788
Q ss_pred HHCCCceeEEEeeC
Q 018116 337 LDAGFTHYKITNVF 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
++.||+..+...+.
T Consensus 340 ~~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 340 AENGFEIIHHRVIG 353 (373)
T ss_dssp HHTTEEEEEEEEEE
T ss_pred HHcCCEEEEEEEEE
Confidence 89999998887773
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.4e-08 Score=95.57 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=81.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC--CccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IP--PADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p--~~D~i~~ 259 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..+++++.+|+.+ + ++ .||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 566789999999999999999999887 89999999 887776553 3579999999876 2 33 4999996
Q ss_pred ------ccccccCChh-------HH-------HHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 260 ------KLVFHAFGDE-------DC-------LKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ------~~~lh~~~~~-------~~-------~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
..++++.++. +. .++|+++.+.|+| ||+|++.+....
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~~ 393 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSIF 393 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 3345544432 11 5789999999999 999988776544
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-08 Score=94.37 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCC--CCccEEEecccc-------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYI--PPADAYFFKLVF------- 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~--p~~D~i~~~~~l------- 263 (360)
+..+|||+|||+|.++..+++++ +..+++++|+ +.+++.+ .+++++.+|+.... ..||+|+++-..
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~~~~ 115 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEAS 115 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCTT
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEECcCccCccccc
Confidence 45699999999999999999987 6789999999 8888777 68999999998743 369999994221
Q ss_pred ---ccCChhHH-----------------HHHHHHHHHhccCCCCCcEEEEEee
Q 018116 264 ---HAFGDEDC-----------------LKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 264 ---h~~~~~~~-----------------~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+|++++.. ..+++++.+.|+| ||+++++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p 165 (421)
T 2ih2_A 116 KYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP 165 (421)
T ss_dssp TCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 11223321 2568999999999 899887654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-08 Score=94.24 Aligned_cols=99 Identities=11% Similarity=0.153 Sum_probs=80.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCC-----CeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPG-----IKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP--PADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p--~~D~i~~~~ 261 (360)
+..+|||+|||+|.++..+++..+. .+++++|+ +.+++.++. ..++++..+|.+.+.+ .||+|++.-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 5679999999999999999988764 78999999 888877763 3378999999987543 699999988
Q ss_pred ccccCChhHH----------------HHHHHHHHHhccCCCCCcEEEEEee
Q 018116 262 VFHAFGDEDC----------------LKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 262 ~lh~~~~~~~----------------~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.+++++.++. ..+++++.+.|+| ||+++++.+
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~p 257 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP 257 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 8776654432 2589999999999 898887653
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.6e-08 Score=91.47 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=74.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CC-CeEEEeCCCCCC-------CCCccEEE
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TE-NLKYIAGDMFQY-------IPPADAYF 258 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-ri~~~~~D~~~~-------~p~~D~i~ 258 (360)
+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ .+ +++++.+|+++. ...||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 4679999999999999999986 449999999 888887764 22 599999998762 23699999
Q ss_pred eccccccC--------ChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 259 FKLVFHAF--------GDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 259 ~~~~lh~~--------~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+.-..... ..+...++++++.++|+| ||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp---gG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc---CcEEEEEECC
Confidence 83221110 123456899999999999 8987775544
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.8e-08 Score=88.16 Aligned_cols=115 Identities=13% Similarity=0.080 Sum_probs=80.5
Q ss_pred cCCCCEEEEeCCCC------chHHHHHHHHCC-CCeEEEeec-hHHHhcCCCCCCeEE-EeCCCCC-CCC-CccEEEecc
Q 018116 193 FEGLGSIVDVGGGN------GGFSKIISEAFP-GIKCTVLDL-PHAVANMPQTENLKY-IAGDMFQ-YIP-PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~------G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~ri~~-~~~D~~~-~~p-~~D~i~~~~ 261 (360)
..++.+|||+|||+ |. ..+++..| +.+++++|+ +. + +++++ +.+|+.+ +.+ .||+|++..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~ 131 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V------SDADSTLIGDCATVHTANKWDLIISDM 131 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B------CSSSEEEESCGGGCCCSSCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C------CCCEEEEECccccCCccCcccEEEEcC
Confidence 46678999999955 66 55666776 689999999 54 2 46889 9999987 444 599999853
Q ss_pred cccc--------CC-hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 262 VFHA--------FG-DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 262 ~lh~--------~~-~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
..+. .. .+....+|+.++++|+| ||++++..... + ...++
T Consensus 132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~~~~-------------------------~---~~~~l 180 (290)
T 2xyq_A 132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKITEH-------------------------S---WNADL 180 (290)
T ss_dssp CCCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEECSS-------------------------S---CCHHH
T ss_pred CccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEEecc-------------------------C---CHHHH
Confidence 3211 10 12345789999999999 89888743211 0 12467
Q ss_pred HHHHHHCCCceeEEE
Q 018116 333 KTLFLDAGFTHYKIT 347 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~ 347 (360)
.+++++.||..+++.
T Consensus 181 ~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 181 YKLMGHFSWWTAFVT 195 (290)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHHHcCCcEEEEE
Confidence 777888888766665
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-08 Score=87.22 Aligned_cols=88 Identities=16% Similarity=0.270 Sum_probs=62.6
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC-CccE
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP-PADA 256 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p-~~D~ 256 (360)
.+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++ +.++
T Consensus 21 ~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 96 (244)
T 1qam_A 21 KIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY 96 (244)
T ss_dssp HHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC
T ss_pred HHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe
Confidence 3444444 4567899999999999999999985 78999999 888876653 3689999999987 555 2344
Q ss_pred EEeccccccCChhHHHHHH
Q 018116 257 YFFKLVFHAFGDEDCLKIL 275 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L 275 (360)
+++.+.-++++.+-..+++
T Consensus 97 ~vv~nlPy~~~~~~l~~~l 115 (244)
T 1qam_A 97 KIFGNIPYNISTDIIRKIV 115 (244)
T ss_dssp EEEEECCGGGHHHHHHHHH
T ss_pred EEEEeCCcccCHHHHHHHH
Confidence 4555555555444333333
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-08 Score=89.53 Aligned_cols=104 Identities=11% Similarity=0.162 Sum_probs=74.9
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC---C
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP---P 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p---~ 253 (360)
..+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .
T Consensus 19 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 19 NQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 34455554 5677899999999999999999984 79999999 888888875 3589999999987 444 2
Q ss_pred ccEEEeccccccCChhHHHHHH--------------HHHHHhccCCCCCcEEEEEe
Q 018116 254 ADAYFFKLVFHAFGDEDCLKIL--------------KKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L--------------~~~~~~L~p~~~gG~lli~e 295 (360)
| .| +.+.-++.+.+....++ +.+.+.|+| ||++.+..
T Consensus 95 f-~v-v~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~~ 145 (245)
T 1yub_A 95 Y-KI-VGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLLL 145 (245)
T ss_dssp E-EE-EEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHHT
T ss_pred c-EE-EEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhhh
Confidence 5 33 34444444443333333 568889999 88876544
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.66 E-value=6.6e-08 Score=92.06 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=79.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC---CC--CccEEEe--
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQY---IP--PADAYFF-- 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~---~p--~~D~i~~-- 259 (360)
..++.+|||+|||+|..+..+++..++.+++++|+ +..++.+++ ..+++++.+|+.+. ++ .||+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 45678999999999999999999998899999999 777766543 33589999998762 23 5999996
Q ss_pred ----ccccccCChh-------HH-------HHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 260 ----KLVFHAFGDE-------DC-------LKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ----~~~lh~~~~~-------~~-------~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
..++++.++. +. .++|+++.+.|+| ||+|++.+....
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~~ 378 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVL 378 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence 2344443331 11 4789999999999 899888775543
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-07 Score=89.37 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=78.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CccEEEec--
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IP-PADAYFFK-- 260 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p-~~D~i~~~-- 260 (360)
++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..++.++.+|+.. + .+ .||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 579999999 888876653 3579999999876 2 33 59999971
Q ss_pred ----ccc-------ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 261 ----LVF-------HAFGDED-------CLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 261 ----~~l-------h~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
.++ .+|+.++ ..++|+++.++|+| ||+|++......
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~~ 250 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTLN 250 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCS
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccCC
Confidence 122 2344322 24789999999999 898887766544
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=6.8e-08 Score=92.14 Aligned_cols=103 Identities=9% Similarity=0.078 Sum_probs=77.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CccEEEe-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IP-PADAYFF- 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p-~~D~i~~- 259 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ .. +.++.+|+.+ + .+ .||+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 457789999999999999999998865 69999999 888877653 24 9999999765 2 23 5999996
Q ss_pred ------------ccccccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 260 ------------KLVFHAFGDEDC-------LKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ------------~~~lh~~~~~~~-------~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
......|+.++. .++|+++.+.|+| ||+|+.......
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs~~ 233 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCTFA 233 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeccCc
Confidence 112222333222 6799999999999 888887665443
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.57 E-value=9.9e-07 Score=81.68 Aligned_cols=151 Identities=15% Similarity=0.217 Sum_probs=94.6
Q ss_pred CCEEEEeCCCCchHHHHH--------HHHC-------CCCeEEEeechH-H-------HhcCCC-------------CCC
Q 018116 196 LGSIVDVGGGNGGFSKII--------SEAF-------PGIKCTVLDLPH-A-------VANMPQ-------------TEN 239 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~-~-------~~~a~~-------------~~r 239 (360)
..+|+|+|||+|..+..+ .+++ |..++...|+|. . +....+ .+.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 579999999999988776 2333 788999999843 2 122110 011
Q ss_pred -eEEEeCCCCC-CCC--CccEEEeccccccCChh------------------------------------HHHHHHHHHH
Q 018116 240 -LKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDE------------------------------------DCLKILKKCR 279 (360)
Q Consensus 240 -i~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~------------------------------------~~~~~L~~~~ 279 (360)
+.-+.+.+.. .+| .+|+|+++.+||++++. +...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334666666 455 59999999999998621 3445799999
Q ss_pred HhccCCCCCcEEEEEeeecCCCCcchhhh--------hHhHhhhhhhhcc--------c--CCcccCHHHHHHHHH-HCC
Q 018116 280 EAIAGNGERGKVLIMDIVINEKEDKHQVT--------EAKLLGDTLMSVS--------V--DGKERTDEEWKTLFL-DAG 340 (360)
Q Consensus 280 ~~L~p~~~gG~lli~e~~~~~~~~~~~~~--------~~~~~~d~~~~~~--------~--~g~~~t~~e~~~ll~-~aG 340 (360)
+.|+| ||++++.-...++........ ....+.++..... . .-..++.+|++++++ +.|
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~ 289 (374)
T 3b5i_A 213 AEVKR---GGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGS 289 (374)
T ss_dssp HHEEE---EEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCS
T ss_pred HHhCC---CCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCC
Confidence 99999 999988877665532110000 0001111110000 0 123469999999998 589
Q ss_pred CceeEEEee
Q 018116 341 FTHYKITNV 349 (360)
Q Consensus 341 f~~~~~~~~ 349 (360)
|++..+...
T Consensus 290 F~I~~le~~ 298 (374)
T 3b5i_A 290 FAIDKLVVY 298 (374)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEEEE
Confidence 998776543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=7.8e-08 Score=88.49 Aligned_cols=93 Identities=19% Similarity=0.225 Sum_probs=74.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~D~i~~~~~lh~ 265 (360)
.++.+|||+|||+|.++.. ++ ...+++++|+ +.+++.+++ .++++++.+|+++....||+|++.-.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP--- 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP--- 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT---
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc---
Confidence 4678999999999999999 76 4779999999 888887764 36899999999874467999998421
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
.....+++.+.+.|+| ||.+++.+...
T Consensus 268 ---~~~~~~l~~~~~~L~~---gG~l~~~~~~~ 294 (336)
T 2yx1_A 268 ---KFAHKFIDKALDIVEE---GGVIHYYTIGK 294 (336)
T ss_dssp ---TTGGGGHHHHHHHEEE---EEEEEEEEEES
T ss_pred ---HhHHHHHHHHHHHcCC---CCEEEEEEeec
Confidence 1123689999999999 88888876554
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.5e-08 Score=92.56 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=72.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CC-CeEEEeCCCCCC---C----CCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TE-NLKYIAGDMFQY---I----PPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-ri~~~~~D~~~~---~----p~~D~i 257 (360)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .+ +++|+.+|+++. . ..||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 456899999999999999999852 348999999 888887764 23 899999998762 1 259999
Q ss_pred Eecccc-----ccCC--hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 258 FFKLVF-----HAFG--DEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 258 ~~~~~l-----h~~~--~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++.-.. .+.. .+...++++.+.+.|+| ||.|++..
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~ 331 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST 331 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 984222 1122 12345688889999999 78776654
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-07 Score=84.40 Aligned_cols=88 Identities=13% Similarity=0.198 Sum_probs=66.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--Cc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~ 254 (360)
..+++... ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .|
T Consensus 40 ~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 40 NKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 34455555 567789999999999999999998 579999999 888887764 4789999999988 555 49
Q ss_pred cEEEeccccccCChhHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKIL 275 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L 275 (360)
|+|+++.. ++++.+-..++|
T Consensus 116 D~Iv~NlP-y~is~pil~~lL 135 (295)
T 3gru_A 116 NKVVANLP-YQISSPITFKLI 135 (295)
T ss_dssp SEEEEECC-GGGHHHHHHHHH
T ss_pred cEEEEeCc-ccccHHHHHHHH
Confidence 99986543 344544333333
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.8e-08 Score=90.59 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=73.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------C-C-CeEEEeCCCCCC-------CCCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------T-E-NLKYIAGDMFQY-------IPPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~-ri~~~~~D~~~~-------~p~~D~i 257 (360)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ . . +++++.+|+++. ...||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 456899999999999999999863 458999999 888887763 2 3 799999998762 1369999
Q ss_pred EeccccccC-------ChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 258 FFKLVFHAF-------GDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 258 ~~~~~lh~~-------~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++.-..... ......+++.++.+.|+| ||.+++..
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 339 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNE---GGILLTFS 339 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 985321110 013456889999999999 78777654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-06 Score=83.49 Aligned_cols=90 Identities=11% Similarity=0.175 Sum_probs=65.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC-----C--CccEEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI-----P--PADAYF 258 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~-----p--~~D~i~ 258 (360)
..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|+. ..+++|+.+|+.+.. + .||+|+
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 456789999999999999999987 679999999 889887764 358999999998732 1 599998
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
+.- |...+..+++.+.+ ++| ++.+++
T Consensus 362 ~dP-----Pr~g~~~~~~~l~~-~~p---~~ivyv 387 (433)
T 1uwv_A 362 LDP-----ARAGAAGVMQQIIK-LEP---IRIVYV 387 (433)
T ss_dssp ECC-----CTTCCHHHHHHHHH-HCC---SEEEEE
T ss_pred ECC-----CCccHHHHHHHHHh-cCC---CeEEEE
Confidence 732 21112245555554 677 555544
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.50 E-value=6.9e-08 Score=90.94 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=74.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-------CCCccEEEe
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-------IPPADAYFF 259 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-------~p~~D~i~~ 259 (360)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+++. ...||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6789999999999999999986 4458999999 888887764 22899999998762 125999998
Q ss_pred ccccccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 260 KLVFHAFGD-------EDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 260 ~~~lh~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.-..+..+. .....+++++.+.|+| ||.+++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 432222111 3456789999999999 888777654
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.2e-07 Score=88.54 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=76.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IP-PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p-~~D~i~~~ 260 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..++.++.+|... . .+ .||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 467789999999999999999998664 69999999 888876653 3579999999865 2 23 59999872
Q ss_pred c------cccc-------CChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 261 L------VFHA-------FGDED-------CLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 261 ~------~lh~-------~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
- ++.. |+.++ ..++|+++.+.|+| ||+|+.......
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~ 238 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTFA 238 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeecc
Confidence 2 2221 11111 13789999999999 888877665443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-07 Score=88.47 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=74.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC-------CCCccEEEec
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY-------IPPADAYFFK 260 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~-------~p~~D~i~~~ 260 (360)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+++. ...||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 678999999 888887764 24599999998762 1259999984
Q ss_pred cccccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 261 LVFHAFGD-------EDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 261 ~~lh~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
-..+..+. +...++++++.+.|+| ||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEEC
Confidence 32211111 3456789999999999 888877654
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.9e-06 Score=79.82 Aligned_cols=149 Identities=16% Similarity=0.174 Sum_probs=92.3
Q ss_pred CCEEEEeCCCCchHHHHHHHH-----------------CCCCeEEEeech-----------HH-HhcC----CCCCCeEE
Q 018116 196 LGSIVDVGGGNGGFSKIISEA-----------------FPGIKCTVLDLP-----------HA-VANM----PQTENLKY 242 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~~-~~~a----~~~~ri~~ 242 (360)
.-+|+|+||++|..+..+... .|.+++...|+| +. .+.. ....+--|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 579999999999998887776 467888999987 11 1111 01112334
Q ss_pred E---eCCCCC-CCC--CccEEEeccccccCChhH-------------------------HH------------HHHHHHH
Q 018116 243 I---AGDMFQ-YIP--PADAYFFKLVFHAFGDED-------------------------CL------------KILKKCR 279 (360)
Q Consensus 243 ~---~~D~~~-~~p--~~D~i~~~~~lh~~~~~~-------------------------~~------------~~L~~~~ 279 (360)
+ .+.|+. -+| .+|+|+++.+||++++.. +. .+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 455555 355 599999999999876421 21 2377789
Q ss_pred HhccCCCCCcEEEEEeeecCCC--CcchhhhhHhHhhhhhhhcc--------c--CCcccCHHHHHHHHHHCC-CceeEE
Q 018116 280 EAIAGNGERGKVLIMDIVINEK--EDKHQVTEAKLLGDTLMSVS--------V--DGKERTDEEWKTLFLDAG-FTHYKI 346 (360)
Q Consensus 280 ~~L~p~~~gG~lli~e~~~~~~--~~~~~~~~~~~~~d~~~~~~--------~--~g~~~t~~e~~~ll~~aG-f~~~~~ 346 (360)
+.|+| ||++++.-...++. ...........+.++..... . .-..++.+|++++++++| |++..+
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 213 EELIS---RGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHEEE---EEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred HHhcc---CCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 99999 99998887766554 21100001112222211100 1 123469999999999985 776665
Q ss_pred E
Q 018116 347 T 347 (360)
Q Consensus 347 ~ 347 (360)
.
T Consensus 290 e 290 (384)
T 2efj_A 290 E 290 (384)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.8e-07 Score=84.84 Aligned_cols=111 Identities=6% Similarity=-0.030 Sum_probs=79.8
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCC--------------------------------------CeEEE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPG--------------------------------------IKCTV 224 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 224 (360)
..++.... +.+...|||.+||+|.+++..+....+ .++++
T Consensus 191 a~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 191 AALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 44455555 467789999999999999888775433 56999
Q ss_pred eec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEecccccc-CC-hhHHHHHHHHHHHhccCCCCCcEEE
Q 018116 225 LDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVFHA-FG-DEDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 225 ~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~-~~-~~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
+|+ +.+++.|+. .+++++..+|+.+ +.+ .||+|+++--.+. +. .++...+.+.+.+.|++ -+|++++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 347 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSVY 347 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEEE
Confidence 999 999987764 4579999999987 333 5999998733221 12 24556677777777765 3388888
Q ss_pred EEee
Q 018116 293 IMDI 296 (360)
Q Consensus 293 i~e~ 296 (360)
++..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8654
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.3e-07 Score=69.88 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=63.4
Q ss_pred cCCCCEEEEeCCCCc-hHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC----CccEEEeccccccC
Q 018116 193 FEGLGSIVDVGGGNG-GFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIP----PADAYFFKLVFHAF 266 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p----~~D~i~~~~~lh~~ 266 (360)
.....+|||||||+| ..+..|++. .++.++++|+ |..++ ++..|+|.+.. +||+|++.+
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir----- 97 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR----- 97 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----
T ss_pred CCCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----
Confidence 345679999999999 588888874 3789999998 66655 89999999643 799998876
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
|+.+...-+.++++.. |.-++|.-..
T Consensus 98 PP~El~~~i~~lA~~v-----~adliI~pL~ 123 (153)
T 2k4m_A 98 PPAEIHSSLMRVADAV-----GARLIIKPLT 123 (153)
T ss_dssp CCTTTHHHHHHHHHHH-----TCEEEEECBT
T ss_pred CCHHHHHHHHHHHHHc-----CCCEEEEcCC
Confidence 5556666677777665 4566664433
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.4e-07 Score=85.80 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=72.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC---CC-CccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQY---IP-PADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~---~p-~~D~i~~~~~l 263 (360)
.++.+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ .-..++..+|+++. .+ .||+|++.-..
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 34789999999999999999987 456999999 899888764 22235778998762 22 49999985332
Q ss_pred ccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 264 HAFGD-------EDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 264 h~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+.-+. ..-.++++.+.+.|+| ||.|+++...
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~s 328 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSCS 328 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence 11111 2235789999999999 8888766543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-06 Score=81.34 Aligned_cols=112 Identities=11% Similarity=0.013 Sum_probs=82.5
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCC--------------------------------------CeEE
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPG--------------------------------------IKCT 223 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 223 (360)
+..++.... +.+...|+|.+||+|.+++..+....+ .+++
T Consensus 183 Aaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 183 AAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 344555555 567789999999999999888765433 5699
Q ss_pred Eeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEecccccc-C-ChhHHHHHHHHHHHhccCCCCCcEE
Q 018116 224 VLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVFHA-F-GDEDCLKILKKCREAIAGNGERGKV 291 (360)
Q Consensus 224 ~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~L~p~~~gG~l 291 (360)
++|+ +.+++.++. .+++++..+|+.+ +.+ .||+|+++--.+. + ..++...+.+.+.+.|++ -+|+++
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~~ 339 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWSQ 339 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcEE
Confidence 9999 999887764 4579999999987 333 6999998633321 2 345667788888888875 348888
Q ss_pred EEEee
Q 018116 292 LIMDI 296 (360)
Q Consensus 292 li~e~ 296 (360)
.|+..
T Consensus 340 ~iit~ 344 (384)
T 3ldg_A 340 FILTN 344 (384)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88754
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.39 E-value=2.7e-07 Score=88.26 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=76.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHC-------------CCCeEEEeec-hHHHhcCCC------C--CCeEEEeCCCCCC-
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAF-------------PGIKCTVLDL-PHAVANMPQ------T--ENLKYIAGDMFQY- 250 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~--~ri~~~~~D~~~~- 250 (360)
....+|+|.|||+|.++..+++.. +..+++|+|+ +.+++.|+. . .++++.++|.+..
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 456799999999999999988763 4578999999 888776652 1 2788999999873
Q ss_pred CC-CccEEEeccccccCChh---------------HHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 251 IP-PADAYFFKLVFHAFGDE---------------DCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 251 ~p-~~D~i~~~~~lh~~~~~---------------~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.. .||+|+++-.++..... .-..+++++.+.|+| ||++.++.+
T Consensus 250 ~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p 308 (445)
T 2okc_A 250 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 308 (445)
T ss_dssp CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence 33 69999997665543211 124789999999999 999987664
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=3.7e-07 Score=82.33 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=62.3
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--C-
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-Y--I- 251 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~--~- 251 (360)
...+++.+. ..+..+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ .++++++.+|+.. + .
T Consensus 15 l~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~ 92 (301)
T 1m6y_A 15 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 92 (301)
T ss_dssp HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence 344555555 56778999999999999999999999899999999 999887763 3689999999865 2 1
Q ss_pred ----CCccEEEec
Q 018116 252 ----PPADAYFFK 260 (360)
Q Consensus 252 ----p~~D~i~~~ 260 (360)
..||.|++.
T Consensus 93 ~~g~~~~D~Vl~D 105 (301)
T 1m6y_A 93 TLGIEKVDGILMD 105 (301)
T ss_dssp HTTCSCEEEEEEE
T ss_pred hcCCCCCCEEEEc
Confidence 369999874
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=6.3e-07 Score=78.71 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=65.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCCC-c-cE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-YIPP-A-DA 256 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~~p~-~-D~ 256 (360)
..+++..+ ..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ +++. + ++
T Consensus 21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 34455555 557789999999999999999987 4579999999 888887764 4689999999987 4442 1 45
Q ss_pred EEeccccccCChhHHHHHH
Q 018116 257 YFFKLVFHAFGDEDCLKIL 275 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L 275 (360)
+++.+.-++.+.+-..++|
T Consensus 98 ~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEECCTTTHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHH
Confidence 6666666656554333333
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.4e-07 Score=83.40 Aligned_cols=111 Identities=11% Similarity=0.015 Sum_probs=80.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCC--------------------------------------CCeEEE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFP--------------------------------------GIKCTV 224 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p--------------------------------------~~~~~~ 224 (360)
..++...+ +.+..+|||.+||+|.+++..+.... ..++++
T Consensus 185 a~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 185 AGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 34444445 45678999999999999998877632 257999
Q ss_pred eec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEecccccc-CC-hhHHHHHHHHHHHhccCCCCCcEEE
Q 018116 225 LDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVFHA-FG-DEDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 225 ~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~-~~-~~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
+|+ +.+++.|+. .++|+|..+|+.+ +.+ .||+|+++--... +. .++..++.+.+.+.|++ -+|+++.
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 341 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWSYY 341 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCEEE
Confidence 999 999988874 3479999999987 334 5999998544322 22 34566777777777775 3378888
Q ss_pred EEee
Q 018116 293 IMDI 296 (360)
Q Consensus 293 i~e~ 296 (360)
++..
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-06 Score=78.21 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=66.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC---Cc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIP---PA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p---~~ 254 (360)
..+++... ..+. +|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 34455555 5566 9999999999999999998 478999999 888877653 4689999999987 444 46
Q ss_pred cEEEeccccccCChhHHHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKK 277 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~ 277 (360)
|.|+ .+.-++.+.+-..++|..
T Consensus 112 ~~iv-~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLV-ANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEE-EEECSSCCHHHHHHHHHH
T ss_pred cEEE-ecCcccccHHHHHHHhcC
Confidence 7655 455566777655566654
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.31 E-value=6.9e-06 Score=75.50 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=92.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHH----------------CCCCeEEEeech-HHHh----cCCC---CCCeEE---EeCCC
Q 018116 195 GLGSIVDVGGGNGGFSKIISEA----------------FPGIKCTVLDLP-HAVA----NMPQ---TENLKY---IAGDM 247 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~~-~~~~----~a~~---~~ri~~---~~~D~ 247 (360)
..-+|+|+||++|..+..+... .|..++...|+| .... .... ..+--| +.+.|
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 4578999999999776654433 467889999984 2222 2211 112233 45677
Q ss_pred CC-CCC--CccEEEeccccccCChh-------------------------------HHHHHHHHHHHhccCCCCCcEEEE
Q 018116 248 FQ-YIP--PADAYFFKLVFHAFGDE-------------------------------DCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 248 ~~-~~p--~~D~i~~~~~lh~~~~~-------------------------------~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
+. .+| .+|+++++.+||++++. +...+|+..++.|+| ||++++
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mvl 207 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMVL 207 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEEE
Confidence 66 455 59999999999987641 234569999999999 999988
Q ss_pred EeeecCCCCcchh-----hh-hHhHhhhhhhhcc----------cCCcccCHHHHHHHHHHCCC-ceeEE
Q 018116 294 MDIVINEKEDKHQ-----VT-EAKLLGDTLMSVS----------VDGKERTDEEWKTLFLDAGF-THYKI 346 (360)
Q Consensus 294 ~e~~~~~~~~~~~-----~~-~~~~~~d~~~~~~----------~~g~~~t~~e~~~ll~~aGf-~~~~~ 346 (360)
.-...++...... +. ....+.++..... ..-..++.+|++++++++|. ++...
T Consensus 208 ~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 8877765421100 00 1112222211111 11234589999999999965 65554
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.7e-06 Score=80.57 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=67.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-CccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP-PADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p-~~D~i~~~~~lh~ 265 (360)
.+..+|||+|||+|.++..+++. ..+++++|. +.+++.+++ .+ ++|+.+|+.+..+ .||+|++.-.-..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 56789999999999999999986 569999999 899888764 23 9999999987444 6999998433221
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+. ..+++.+. .|+| ||.+++.
T Consensus 366 ~~----~~~~~~l~-~l~p---~givyvs 386 (425)
T 2jjq_A 366 LH----PRLVKRLN-REKP---GVIVYVS 386 (425)
T ss_dssp SC----HHHHHHHH-HHCC---SEEEEEE
T ss_pred hH----HHHHHHHH-hcCC---CcEEEEE
Confidence 21 13455554 3899 7777664
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=5e-07 Score=88.90 Aligned_cols=127 Identities=15% Similarity=0.167 Sum_probs=85.0
Q ss_pred ChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhh--hcCCCCEEEEeCCCCchHHHHHHHHC----CCCeEEEeech
Q 018116 155 NYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRK--IFEGLGSIVDVGGGNGGFSKIISEAF----PGIKCTVLDLP 228 (360)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~--~~~~~~~iLDvG~G~G~~~~~l~~~~----p~~~~~~~D~~ 228 (360)
..|+.+++|+-....|.+++... +...... .......|+|||||+|-++...+++. ..+++.+++-.
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~A-------l~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn 394 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYKC-------LLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN 394 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------HHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred hhhhhhcCChhhHHHHHHHHHHH-------HHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 45888888988877777776431 2222110 02344689999999998854433332 23478899984
Q ss_pred HHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEE
Q 018116 229 HAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKV 291 (360)
Q Consensus 229 ~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~l 291 (360)
++...+.+ .++|+++.+|+.+ ..| .+|+|++-.+=..+-.+-...+|....+.|+| ||.+
T Consensus 395 p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGim 463 (637)
T 4gqb_A 395 PNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVS 463 (637)
T ss_dssp HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEE
T ss_pred HHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEE
Confidence 45444432 7899999999988 666 69999985544333444455778888899999 7654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.8e-06 Score=74.32 Aligned_cols=102 Identities=11% Similarity=0.137 Sum_probs=65.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--CccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh 264 (360)
+.+..+|||+|||+|.++..++++.+..+++++|+ -.....+.. ..++.....++.. .++ .+|+|++-...+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn 151 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES 151 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC
Confidence 56778999999999999998887766556777776 332111221 1134444454422 333 599999866544
Q ss_pred ---cCChh-HHHHHHHHHHHhccCCCCC-cEEEEEeeec
Q 018116 265 ---AFGDE-DCLKILKKCREAIAGNGER-GKVLIMDIVI 298 (360)
Q Consensus 265 ---~~~~~-~~~~~L~~~~~~L~p~~~g-G~lli~e~~~ 298 (360)
++-|. ....+|+.+.++|+| | |.+++ ..+.
T Consensus 152 sG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~-KVf~ 186 (277)
T 3evf_A 152 SSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV-KVLA 186 (277)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE-EESC
T ss_pred cCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE-EecC
Confidence 22222 233568999999999 8 88777 4443
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.26 E-value=9.7e-07 Score=77.72 Aligned_cols=81 Identities=12% Similarity=0.213 Sum_probs=60.2
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC----
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP---- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p---- 252 (360)
..+++..+ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 19 QKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhcc
Confidence 34455555 5677899999999999999999874 79999999 888887764 4799999999987 432
Q ss_pred --CccEEEeccccccCChh
Q 018116 253 --PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 253 --~~D~i~~~~~lh~~~~~ 269 (360)
.+| +..+.-++.+.+
T Consensus 95 ~~~~~--vv~NlPY~is~~ 111 (255)
T 3tqs_A 95 DKPLR--VVGNLPYNISTP 111 (255)
T ss_dssp SSCEE--EEEECCHHHHHH
T ss_pred CCCeE--EEecCCcccCHH
Confidence 355 334444444444
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.2e-07 Score=81.13 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=54.1
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCC--CeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPG--IKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-YIP 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~~p 252 (360)
..+++... ..+..+|||||||+|.++..+++..+. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 33455555 567789999999999999999998653 45999999 999887765 4789999999987 444
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.8e-06 Score=86.88 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=73.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCC---C-CCccEEEec
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------T-ENLKYIAGDMFQY---I-PPADAYFFK 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~ri~~~~~D~~~~---~-p~~D~i~~~ 260 (360)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ . ++++++.+|+++. . ..||+|++.
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred cCCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 467899999999999999988742 346999999 888887764 2 5899999999772 2 359999984
Q ss_pred cccc--------cCC-hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 261 LVFH--------AFG-DEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 261 ~~lh--------~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
-..+ .+. .....++++.+.++|+| ||.|++..
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s~ 657 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFSN 657 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 3211 111 23456789999999999 88887544
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.24 E-value=9.4e-07 Score=77.69 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=60.9
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC---
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIPP--- 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p~--- 253 (360)
..+++... ..+..+|||||||+|.++. +. +.+..+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 11 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 11 DSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 34455554 5667899999999999999 64 444334999999 999887764 2589999999977 4432
Q ss_pred ---ccEEEeccccccCChhHHHHHH
Q 018116 254 ---ADAYFFKLVFHAFGDEDCLKIL 275 (360)
Q Consensus 254 ---~D~i~~~~~lh~~~~~~~~~~L 275 (360)
.+.+++.+.-++.+.+-..++|
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2345556665555554443444
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2e-05 Score=72.08 Aligned_cols=143 Identities=10% Similarity=0.079 Sum_probs=104.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC---------------------------CCCeEEEeCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ---------------------------TENLKYIAGD 246 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~ri~~~~~D 246 (360)
.+...||.+|||.......+...+++++++-+|.|.+++.-++ .++..++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4678999999999999999999888999999999887653221 3789999999
Q ss_pred CCC-CC----------C-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhh
Q 018116 247 MFQ-YI----------P-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLG 314 (360)
Q Consensus 247 ~~~-~~----------p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~ 314 (360)
+.+ ++ + ...++++-.+|++++.+++.++|+.+.+.+ | +|.+++.|.+.+..... .+.. ....
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~e~i~~~~~~~-~fg~-~m~~ 249 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISYDPIGGSQPND-RFGA-IMQS 249 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEEEECCCCSTTC-CHHH-HHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEEeccCCCCCcc-hHHH-HHHH
Confidence 987 22 1 267888899999999999999999999987 5 68999999988732211 1211 1111
Q ss_pred hhhh-hcc-c-C-CcccCHHHHHHHHHHCCCc
Q 018116 315 DTLM-SVS-V-D-GKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 315 d~~~-~~~-~-~-g~~~t~~e~~~ll~~aGf~ 342 (360)
.+.. ... . + ....+.++..+.|.++||.
T Consensus 250 ~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 250 NLKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred HhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 1111 111 1 1 2345889999999999997
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.8e-06 Score=75.72 Aligned_cols=97 Identities=13% Similarity=0.243 Sum_probs=73.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCC----CCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQYI----PPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~~----p~~D~i 257 (360)
...++||-||+|.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|..+-. ..||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4678999999999999999998777789999999 999886652 689999999998732 259999
Q ss_pred EeccccccCChh---HHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 258 FFKLVFHAFGDE---DCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 258 ~~~~~lh~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+.-.. ...... --..+++.++++|+| ||.++..
T Consensus 162 i~D~~-dp~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q 197 (294)
T 3o4f_A 162 ISDCT-DPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQ 197 (294)
T ss_dssp EESCC-CCCCTTCCSSCCHHHHHHHHTEEE---EEEEEEE
T ss_pred EEeCC-CcCCCchhhcCHHHHHHHHHHhCC---CCEEEEe
Confidence 86321 111110 013689999999999 7766654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.15 E-value=3.2e-06 Score=83.22 Aligned_cols=127 Identities=16% Similarity=0.125 Sum_probs=84.8
Q ss_pred ChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-------------CCCe
Q 018116 155 NYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-------------PGIK 221 (360)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-------------p~~~ 221 (360)
..|+.+.+|+.....|.+++... +...+. ...+...|+|||||+|-++...+++. ...+
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~-~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k 448 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGA-------LKDLGA-DGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK 448 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH-------HHHHHT-TCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE
T ss_pred HHHHHHcCChhhHHHHHHHHHHH-------HHHhhc-ccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE
Confidence 45788888888777777766532 111111 01235689999999999974332221 2348
Q ss_pred EEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC------C-CccEEEeccccccCChhHHHHHHHHHHHhccCCC
Q 018116 222 CTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YI------P-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNG 286 (360)
Q Consensus 222 ~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~------p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~ 286 (360)
++++|- +.++...+. .++|+++.+|+.+ .. + .+|+|++-..=.....+-...+|..+.+.|+|
T Consensus 449 VyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp-- 526 (745)
T 3ua3_A 449 LYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP-- 526 (745)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT--
T ss_pred EEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC--
Confidence 999998 544432221 6889999999987 34 4 69999986654444455556788888999999
Q ss_pred CCcEEE
Q 018116 287 ERGKVL 292 (360)
Q Consensus 287 ~gG~ll 292 (360)
||.++
T Consensus 527 -~Gi~i 531 (745)
T 3ua3_A 527 -TTISI 531 (745)
T ss_dssp -TCEEE
T ss_pred -CcEEE
Confidence 77543
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.6e-06 Score=75.05 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=81.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHH-------CCC-----CeEEEeec-h---HHHhcC-----------C------------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEA-------FPG-----IKCTVLDL-P---HAVANM-----------P------------ 235 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~a-----------~------------ 235 (360)
+..+|||||+|+|..+..+++. .|+ +++++++. | +.+..+ +
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988887664 574 58999997 5 222211 0
Q ss_pred ------C--CCCeEEEeCCCCC--C-CC-----CccEEEecc-ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 236 ------Q--TENLKYIAGDMFQ--Y-IP-----PADAYFFKL-VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 236 ------~--~~ri~~~~~D~~~--~-~p-----~~D~i~~~~-~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
. ..++++..+|+.+ + .+ .||+|++-- .-..-|+-.-..+|+.+++.|+| ||.|+...
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~p---GG~l~tys--- 213 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLATFT--- 213 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEE---EEEEEESC---
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCC---CcEEEEEe---
Confidence 1 2457788999865 2 22 599998732 11101110124689999999999 88776411
Q ss_pred CCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEE
Q 018116 299 NEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEV 358 (360)
Q Consensus 299 ~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~ 358 (360)
....+++.|.++||.+.++...+....++.+
T Consensus 214 -----------------------------aa~~vrr~L~~aGF~v~~~~g~~~kr~m~~a 244 (257)
T 2qy6_A 214 -----------------------------SAGFVRRGLQEAGFTMQKRKGFGRKREMLCG 244 (257)
T ss_dssp -----------------------------CBHHHHHHHHHHTEEEEEECCSTTCCCEEEE
T ss_pred -----------------------------CCHHHHHHHHHCCCEEEeCCCCCCCCceEEE
Confidence 0124667788899997766555444445444
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.3e-06 Score=73.15 Aligned_cols=71 Identities=13% Similarity=0.259 Sum_probs=55.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-h-------HHHhcCCC-------CCCeEEEeCCCCCC---C---
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-P-------HAVANMPQ-------TENLKYIAGDMFQY---I--- 251 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~-------~~ri~~~~~D~~~~---~--- 251 (360)
..+..+|||+|||+|..+..+++. +.+++++|+ + .+++.++. .+|++++.+|+.+. +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345679999999999999999986 679999999 8 77776653 35799999998762 2
Q ss_pred -CCccEEEecccccc
Q 018116 252 -PPADAYFFKLVFHA 265 (360)
Q Consensus 252 -p~~D~i~~~~~lh~ 265 (360)
..||+|++.-.+++
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 36999998655544
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.2e-06 Score=72.73 Aligned_cols=106 Identities=18% Similarity=0.251 Sum_probs=68.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCC-eEEEeC-CCCC-CCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TEN-LKYIAG-DMFQ-YIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~r-i~~~~~-D~~~-~~p~~ 254 (360)
.++.+++. +.+..+|||+|||.|.++...++..+..+++++|+ ......+.. ..+ +.+... |+.. +...+
T Consensus 80 ~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 80 RWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence 44555554 67788999999999999999888777667888888 433232221 223 333333 4433 22359
Q ss_pred cEEEeccccc----cCChhHHHHHHHHHHHhccCCCCC--cEEEE
Q 018116 255 DAYFFKLVFH----AFGDEDCLKILKKCREAIAGNGER--GKVLI 293 (360)
Q Consensus 255 D~i~~~~~lh----~~~~~~~~~~L~~~~~~L~p~~~g--G~lli 293 (360)
|+|++-...+ ..+......+|+-+.++|+| | |.+++
T Consensus 158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~ 199 (282)
T 3gcz_A 158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI 199 (282)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE
T ss_pred CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE
Confidence 9999865544 11122233568888899999 7 77766
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.6e-06 Score=79.36 Aligned_cols=88 Identities=14% Similarity=0.226 Sum_probs=64.3
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C--------------
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---I-------------- 251 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~-------------- 251 (360)
..+|||+|||+|.++..+++. ..+++++|. +.+++.+++ .++++|+.+|+.+. .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 478999999999999999875 458999999 889887763 35899999998651 1
Q ss_pred --CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 252 --PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 252 --p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
..||+|++.- |. ..+..++.+.|++ +|+++.+..
T Consensus 292 ~~~~fD~Vv~dP-----Pr---~g~~~~~~~~l~~---~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVDP-----PR---SGLDSETEKMVQA---YPRILYISC 327 (369)
T ss_dssp GGCCEEEEEECC-----CT---TCCCHHHHHHHTT---SSEEEEEES
T ss_pred ccCCCCEEEECc-----Cc---cccHHHHHHHHhC---CCEEEEEEC
Confidence 1589998631 11 1234455666677 788877653
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.6e-05 Score=79.96 Aligned_cols=110 Identities=9% Similarity=0.045 Sum_probs=76.3
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH------------------------------------------CCC
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA------------------------------------------FPG 219 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~------------------------------------------~p~ 219 (360)
+..++.... +.+...|||.+||+|.+++..+.. .+.
T Consensus 179 Aa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 179 AAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 344555555 456789999999999999887764 133
Q ss_pred CeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC----CccEEEecccccc-C-ChhHHHHHHHHHHHhcc-
Q 018116 220 IKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP----PADAYFFKLVFHA-F-GDEDCLKILKKCREAIA- 283 (360)
Q Consensus 220 ~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p----~~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~L~- 283 (360)
.+++|+|+ +.+++.|+. .++|+|..+|+.+ ..| .||+|+++=-... + .+++...+.+.+.+.|+
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 68999999 999987764 4569999999976 222 6999998633221 1 23445555655555544
Q ss_pred --CCCCCcEEEEEee
Q 018116 284 --GNGERGKVLIMDI 296 (360)
Q Consensus 284 --p~~~gG~lli~e~ 296 (360)
| ||++.|+..
T Consensus 337 ~~~---g~~~~ilt~ 348 (703)
T 3v97_A 337 QFG---GWNLSLFSA 348 (703)
T ss_dssp HCT---TCEEEEEES
T ss_pred hCC---CCeEEEEeC
Confidence 6 899988754
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=9.1e-06 Score=75.69 Aligned_cols=92 Identities=12% Similarity=0.045 Sum_probs=70.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C-----------------CCeEEEeCCCCCC--
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----T-----------------ENLKYIAGDMFQY-- 250 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-----------------~ri~~~~~D~~~~-- 250 (360)
++.+|||+|||+|..++.++++.+..+++++|+ +.+++.+++ . .+++++.+|+...
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 468999999999999999999988889999999 888766553 1 2388999998652
Q ss_pred -CC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 251 -IP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 251 -~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+ .||+|++. ... + ...+|..+.+.|+| ||.|++.-
T Consensus 127 ~~~~~fD~I~lD-P~~--~---~~~~l~~a~~~lk~---gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLD-PFG--S---PMEFLDTALRSAKR---RGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEEC-CSS--C---CHHHHHHHHHHEEE---EEEEEEEE
T ss_pred hccCCCCEEEeC-CCC--C---HHHHHHHHHHhcCC---CCEEEEEe
Confidence 23 59999853 211 1 24678999999999 88666643
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.89 E-value=3.9e-05 Score=69.39 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=54.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--C---CCccEEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--I---PPADAYF 258 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~---p~~D~i~ 258 (360)
..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..+++++.+|+.+ + . ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999875 5679999999 888776653 3579999999866 2 1 2599998
Q ss_pred e
Q 018116 259 F 259 (360)
Q Consensus 259 ~ 259 (360)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00012 Score=67.15 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=63.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCC---CccEEEeccccccCChh
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIP---PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~~p---~~D~i~~~~~lh~~~~~ 269 (360)
+.++.++||+||++|+++..++++ +.+++++|..++.......++|+++.+|.+...| .+|+|++-.+.+ .
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p- 282 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---P- 282 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---H-
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---h-
Confidence 568899999999999999999987 7899999985554444447899999999988322 599998855542 2
Q ss_pred HHHHHHHHHHHhccC
Q 018116 270 DCLKILKKCREAIAG 284 (360)
Q Consensus 270 ~~~~~L~~~~~~L~p 284 (360)
..++.-+.++|..
T Consensus 283 --~~~~~l~~~wl~~ 295 (375)
T 4auk_A 283 --AKVAALMAQWLVN 295 (375)
T ss_dssp --HHHHHHHHHHHHT
T ss_pred --HHhHHHHHHHHhc
Confidence 2445555566655
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=6.1e-06 Score=76.99 Aligned_cols=93 Identities=12% Similarity=0.013 Sum_probs=70.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------CCC-eEEEeCCCCC--C--CC-CccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ-------TEN-LKYIAGDMFQ--Y--IP-PADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------~~r-i~~~~~D~~~--~--~p-~~D~i~ 258 (360)
.++.+|||++||+|.+++.++++.++ .+++++|+ +.+++.+++ .++ ++++.+|.++ . .+ .||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 45789999999999999999998765 57999999 888877764 345 9999999865 2 22 599998
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+-- +.. ...+++.+.+.|+| ||.|++..
T Consensus 131 lDP----~g~--~~~~l~~a~~~Lk~---gGll~~t~ 158 (392)
T 3axs_A 131 LDP----FGT--PVPFIESVALSMKR---GGILSLTA 158 (392)
T ss_dssp ECC----SSC--CHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECC----CcC--HHHHHHHHHHHhCC---CCEEEEEe
Confidence 743 111 13578899999999 78665544
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.80 E-value=3.2e-05 Score=75.46 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=72.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC------------------CCeEEEeec-hHHHhcCCC------CC-----CeEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP------------------GIKCTVLDL-PHAVANMPQ------TE-----NLKYI 243 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~------~~-----ri~~~ 243 (360)
.+..+|+|.+||+|.++..+.+... ..+++|+|+ +.+++.|+. .. ++++.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 4567999999999999988877532 247999999 888776652 22 27899
Q ss_pred eCCCCC-C---CCCccEEEeccccccCCh------------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 244 AGDMFQ-Y---IPPADAYFFKLVFHAFGD------------EDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 244 ~~D~~~-~---~p~~D~i~~~~~lh~~~~------------~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
++|.+. + ...||+|+++-.+..... ..-..++.++.+.|+| ||++.++-+
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~p 313 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVVP 313 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEec
Confidence 999887 2 246999998644432211 1124689999999999 999887643
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0012 Score=60.12 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=103.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeechHHHhcCC-----------------------------CCCCeEEEe
Q 018116 195 GLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDLPHAVANMP-----------------------------QTENLKYIA 244 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~ri~~~~ 244 (360)
+...||-+|||.=.....+... .++++++=+|.|++++.=+ ..++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 5689999999999888888775 3678999999988765200 157899999
Q ss_pred CCCCC--CC---------C--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHh
Q 018116 245 GDMFQ--YI---------P--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAK 311 (360)
Q Consensus 245 ~D~~~--~~---------p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~ 311 (360)
.|+.+ .+ . ..=++++-.+|.+++.+++.++|+.+.+..++ |.+++.|.+.+... +.. .
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~d~----fg~-~ 240 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMGDR----FGQ-I 240 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTTSH----HHH-H
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCCCH----HHH-H
Confidence 99976 11 1 14467888899999999999999999998765 88888899865421 211 1
Q ss_pred Hhhhhhhhcc-cCC--cccCHHHHHHHHHHCCCceeEEEee
Q 018116 312 LLGDTLMSVS-VDG--KERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 312 ~~~d~~~~~~-~~g--~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
....+..... ..+ ...+.++..+.|.++||+.+++.++
T Consensus 241 M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 241 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 1111111111 111 2347888899999999998877665
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=9.3e-05 Score=65.28 Aligned_cols=98 Identities=14% Similarity=0.206 Sum_probs=63.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C-CCeEEEeC-CCCC-CCCCccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----T-ENLKYIAG-DMFQ-YIPPADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~ri~~~~~-D~~~-~~p~~D~i~~~~~lh 264 (360)
+.+..+|||+||++|+++..+++..+-..++++|+ ......... . +-+.+..+ |++. ....+|+|++-..-+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn 158 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES 158 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcCC
Confidence 56789999999999999999998766567888888 332222111 1 23444433 4443 223699999854443
Q ss_pred ----cCChhHHHHHHHHHHHhccCCCCC-cEEEE
Q 018116 265 ----AFGDEDCLKILKKCREAIAGNGER-GKVLI 293 (360)
Q Consensus 265 ----~~~~~~~~~~L~~~~~~L~p~~~g-G~lli 293 (360)
..+......+|+-+.++|+| | |.+++
T Consensus 159 sG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~ 189 (300)
T 3eld_A 159 SSNPLVERDRTMKVLENFERWKHV---NTENFCV 189 (300)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEE
Confidence 11111224568888899999 8 87776
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00022 Score=64.39 Aligned_cols=144 Identities=10% Similarity=0.018 Sum_probs=94.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCC---------CCCCeEEEeCCCCCCC------CC-----
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMP---------QTENLKYIAGDMFQYI------PP----- 253 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~ri~~~~~D~~~~~------p~----- 253 (360)
.+...||++|||-=.....+.. .++++++-+|.|.+++..+ ..++..++..|+.+.+ .+
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 3556899999998877655542 1258999999988876432 2678999999997631 12
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhh-h-hhhhc-----c-cCCc
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLG-D-TLMSV-----S-VDGK 325 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-d-~~~~~-----~-~~g~ 325 (360)
-=++++-.++|++++++..++|+.+.+.+.| |..+++|.+.++.... ......+. . +.... . .+..
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~----gs~l~~d~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~~~ 253 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV----GSRIAVETSPLHGDEW--REQMQLRFRRVSDALGFEQAVDVQELI 253 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT----TCEEEEECCCTTCSHH--HHHHHHHHHHHHC-----------CCT
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCC----CeEEEEEecCCCCcch--hHHHHHHHHHHHHHcCCcCCCCccccc
Confidence 3357888899999999999999999998888 5556667765543111 00001111 1 10000 0 0112
Q ss_pred c-cC-HHHHHHHHHHCCCcee
Q 018116 326 E-RT-DEEWKTLFLDAGFTHY 344 (360)
Q Consensus 326 ~-~t-~~e~~~ll~~aGf~~~ 344 (360)
. ++ .++..++|.+.||+.+
T Consensus 254 ~~~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 254 YHDENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TCCTTCCCHHHHHTTTTEEEE
T ss_pred cCCCChHHHHHHHHHCcCccc
Confidence 2 25 7889999999999887
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.63 E-value=5.2e-05 Score=66.63 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=53.5
Q ss_pred cCCC--CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHH-------HhcCC----C-C---CCeEEEeCCCCC---CC
Q 018116 193 FEGL--GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHA-------VANMP----Q-T---ENLKYIAGDMFQ---YI 251 (360)
Q Consensus 193 ~~~~--~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~----~-~---~ri~~~~~D~~~---~~ 251 (360)
..++ .+|||+|||+|..+..++.+ +.+++++|. +.+ ++.++ . . +|++++.+|..+ ..
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4455 79999999999999999998 668999999 654 33221 1 1 579999999865 23
Q ss_pred C-CccEEEecccccc
Q 018116 252 P-PADAYFFKLVFHA 265 (360)
Q Consensus 252 p-~~D~i~~~~~lh~ 265 (360)
+ .||+|++--..++
T Consensus 162 ~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPH 176 (258)
T ss_dssp SSCCSEEEECCCCCC
T ss_pred cccCCEEEEcCCCCC
Confidence 3 5999998766554
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00013 Score=64.25 Aligned_cols=75 Identities=24% Similarity=0.229 Sum_probs=59.7
Q ss_pred hHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-C------
Q 018116 181 AIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-Y------ 250 (360)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~------ 250 (360)
+.+.+++.+. ..+...+||.+||.|+.+..++++ +.+++++|. |.+++.+++ .+|++++.+|+.+ +
T Consensus 10 Ll~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~ 85 (285)
T 1wg8_A 10 LYQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 85 (285)
T ss_dssp THHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHc
Confidence 3466677776 667889999999999999999998 789999999 888765532 3699999999865 1
Q ss_pred -CCCccEEEe
Q 018116 251 -IPPADAYFF 259 (360)
Q Consensus 251 -~p~~D~i~~ 259 (360)
...+|.|++
T Consensus 86 g~~~vDgIL~ 95 (285)
T 1wg8_A 86 GVERVDGILA 95 (285)
T ss_dssp TCSCEEEEEE
T ss_pred CCCCcCEEEe
Confidence 135888886
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00022 Score=60.55 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=72.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC--C---CCCeEEEeC-CCCC-CCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP--Q---TENLKYIAG-DMFQ-YIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~---~~ri~~~~~-D~~~-~~p~~ 254 (360)
..+.+++. +.+..+|||+||++|.++...+....-.++.++|+ +.-.+... + -+.|+|+.+ |++. +...+
T Consensus 68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 44555554 67788999999999999998888776668999999 33333222 1 478999999 9765 33359
Q ss_pred cEEEeccccccCC-h--h-HHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 255 DAYFFKLVFHAFG-D--E-DCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 255 D~i~~~~~lh~~~-~--~-~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
|+++|--.=..=+ . + ...++|.-+.++|++ |.+++ -...+.
T Consensus 146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~----~~fc~-KVl~py 190 (267)
T 3p8z_A 146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN----NQFCI-KVLNPY 190 (267)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS----CEEEE-EESCCC
T ss_pred cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc----CCEEE-EEccCC
Confidence 9998733221111 1 1 123467777899987 55655 443333
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.53 E-value=3.6e-05 Score=71.98 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=53.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C----CCeEEEeCCCCCC--C---CCccEEEe
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----T----ENLKYIAGDMFQY--I---PPADAYFF 259 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~----~ri~~~~~D~~~~--~---p~~D~i~~ 259 (360)
.++.+|||+|||+|..+..+++. ..+++++|+ +.+++.++. . ++++++++|+.+. . ..||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 34789999999999999999887 579999999 888887753 1 5799999999873 2 26999998
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0003 Score=70.50 Aligned_cols=100 Identities=10% Similarity=0.047 Sum_probs=69.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC---CCeEEEeec-hHHHhcC--C----C------CCCeEEEeCCCCCC----CCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP---GIKCTVLDL-PHAVANM--P----Q------TENLKYIAGDMFQY----IPP 253 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~----~------~~ri~~~~~D~~~~----~p~ 253 (360)
.+..+|+|.|||+|.++..+++..+ ..++.|+|+ +.+++.| + . .....+...|+..+ ...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3567999999999999999998876 357999999 7777665 1 0 12245666676652 236
Q ss_pred ccEEEecccccc-CC-hhH-------------------------HHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 254 ADAYFFKLVFHA-FG-DED-------------------------CLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 254 ~D~i~~~~~lh~-~~-~~~-------------------------~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
||+|+++=-... +. +.. ...+++++.+.|+| ||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 999998543311 11 111 23468889999999 999887554
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00032 Score=60.53 Aligned_cols=106 Identities=18% Similarity=0.176 Sum_probs=61.8
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHH--HhcCCC-CCCe---EEEeC-CCCCCCC-Cc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHA--VANMPQ-TENL---KYIAG-DMFQYIP-PA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~--~~~a~~-~~ri---~~~~~-D~~~~~p-~~ 254 (360)
.++-+++ .+++..+|||+||+.|+++...++.-+-..+.+.++... +..... ...+ .|..+ |+++..+ .+
T Consensus 63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~ 140 (269)
T 2px2_A 63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEIS 140 (269)
T ss_dssp HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCCC
Confidence 3444554 378899999999999999998887521112234433111 111111 1344 55557 9987433 69
Q ss_pred cEEEecccc---ccCChh-HHHHHHHHHHHhccCCCCCc-EEEE
Q 018116 255 DAYFFKLVF---HAFGDE-DCLKILKKCREAIAGNGERG-KVLI 293 (360)
Q Consensus 255 D~i~~~~~l---h~~~~~-~~~~~L~~~~~~L~p~~~gG-~lli 293 (360)
|+|++=..- +..-|. ....+|.-+.++|+| || .+++
T Consensus 141 DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~Fvv 181 (269)
T 2px2_A 141 DTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSR---GPKEFCI 181 (269)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred CEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhc---CCcEEEE
Confidence 999873321 111111 122357777799999 78 6666
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00048 Score=57.93 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=61.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCC-------------
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQY------------- 250 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~~------------- 250 (360)
.+.++|||+||| .-+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 456899999985 55555665 45789999998 776665542 45899999995421
Q ss_pred -----------C---CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 251 -----------I---PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 251 -----------~---p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
. ..||+|++-.- .....+..+.+.|+| ||.| |+|.+
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~---GG~I-v~DNv 155 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITR---PVTL-LFDDY 155 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSS---CEEE-EETTG
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCC---CeEE-EEeCC
Confidence 1 24999987431 123556667788999 6655 66654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=5.6e-05 Score=85.85 Aligned_cols=142 Identities=14% Similarity=0.150 Sum_probs=67.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCC-----CeEEEeec-hHHHhcCCCC---CCeEEEeCCCCCC---CC-CccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPG-----IKCTVLDL-PHAVANMPQT---ENLKYIAGDMFQY---IP-PADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~---~ri~~~~~D~~~~---~p-~~D~i~~~~ 261 (360)
+..+||+||+|+|..+..+++.... .+++..|. +...+.+++. -.++....|...+ .+ +||+|++.+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 4569999999999887777766542 36888888 6666666541 1233322333222 22 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
+||.-++ ....|+++++.|+| ||++++.+......-.. ...+.... ........+.++|.++|+++||
T Consensus 1320 vl~~t~~--~~~~l~~~~~lL~p---~G~l~~~e~~~~~~~g~-----~~~~~~~~--~r~~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A 1320 ALATLGD--PAVAVGNMAATLKE---GGFLLLHTLLAGHPLGE-----MVGFLTSP--EQGGRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp C-------------------------CCEEEEEEC---------------------------------CTTTTSSTTTTE
T ss_pred ccccccc--HHHHHHHHHHhcCC---CcEEEEEeccccccccc-----cccccccc--cccCCcccCHHHHHHHHHhCCC
Confidence 9985443 45789999999999 99999877543110000 00000000 0001223467889999999999
Q ss_pred ceeEEEe
Q 018116 342 THYKITN 348 (360)
Q Consensus 342 ~~~~~~~ 348 (360)
+.+....
T Consensus 1388 ~~~~~~~ 1394 (2512)
T 2vz8_A 1388 HLVALKR 1394 (2512)
T ss_dssp EEEEEEE
T ss_pred ceeeecc
Confidence 8876643
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00041 Score=60.90 Aligned_cols=105 Identities=11% Similarity=0.159 Sum_probs=68.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC---C--CCCeEEEeC-CCCC-CCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP---Q--TENLKYIAG-DMFQ-YIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~--~~ri~~~~~-D~~~-~~p~~ 254 (360)
..+.+.+. +.+..+|||+||++|.++...+....-.++.++|+ ..-.+... . -+-|.|+.+ |++. +...+
T Consensus 84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 34455544 66778999999999999998887765557999998 33222111 1 244889988 8766 33459
Q ss_pred cEEEeccccccCChh-----HHHHHHHHHHHhccCCCCC-cEEEE
Q 018116 255 DAYFFKLVFHAFGDE-----DCLKILKKCREAIAGNGER-GKVLI 293 (360)
Q Consensus 255 D~i~~~~~lh~~~~~-----~~~~~L~~~~~~L~p~~~g-G~lli 293 (360)
|+|+|--. .--+.+ ...++|.-+.++|++ | |.+++
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~ 202 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV 202 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE
Confidence 99887332 211221 123467777899998 5 66666
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00016 Score=66.52 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=69.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------------CCCeEEEeCCCCCC-------C
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------------TENLKYIAGDMFQY-------I 251 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~ri~~~~~D~~~~-------~ 251 (360)
.++++||-||+|.|..+..+++. |..+++.+|+ +.+++.+++ .+|++++.+|...- .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 35689999999999999999974 5579999999 998876542 35799999998651 1
Q ss_pred CCccEEEeccccc-------cCCh-hHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 252 PPADAYFFKLVFH-------AFGD-EDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 252 p~~D~i~~~~~lh-------~~~~-~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
..||+|+.--.=. .... .-...+++.++++|+| ||.++.
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~ 329 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFT 329 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 2599998632110 0011 1124678999999999 776654
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00057 Score=66.47 Aligned_cols=98 Identities=12% Similarity=0.050 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHC---CCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCC-CC-----CccE
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAF---PGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQY-IP-----PADA 256 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~~-~p-----~~D~ 256 (360)
...+|+|.+||+|.++..+++.. +..++.|+|+ +.+...++. .+++.+..+|.+.. +| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 56799999999999999998885 3678999999 887776652 25788999998863 22 4999
Q ss_pred EEeccccc-cCC------------------h--hHHHHHHHHHHHhcc-CCCCCcEEEEEe
Q 018116 257 YFFKLVFH-AFG------------------D--EDCLKILKKCREAIA-GNGERGKVLIMD 295 (360)
Q Consensus 257 i~~~~~lh-~~~------------------~--~~~~~~L~~~~~~L~-p~~~gG~lli~e 295 (360)
|+++=-+. .|. . ..-..+++++.+.|+ | ||++.++-
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~---gGr~a~Vl 358 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD---NGVMAIVL 358 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT---TCEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC---ceeEEEEe
Confidence 99752111 111 0 001248999999999 8 99987754
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00016 Score=70.56 Aligned_cols=97 Identities=19% Similarity=0.160 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHCC---------------CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFP---------------GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-Y- 250 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~- 250 (360)
..+|+|.+||+|.++..+++..+ ..++.|+|+ +.++..|+. ..++.+..+|.+. +
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~ 324 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ 324 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence 34999999999999988765432 568999999 888776652 2345558888876 3
Q ss_pred CC--CccEEEeccccc--cCChh-------------------------HHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 251 IP--PADAYFFKLVFH--AFGDE-------------------------DCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 251 ~p--~~D~i~~~~~lh--~~~~~-------------------------~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+ .||+|+++=-+. .|..+ .-..+++++.+.|+| ||++.++-
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVl 395 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLL 395 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEe
Confidence 22 599999843322 12111 112589999999999 99987764
|
| >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0003 Score=53.09 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=53.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHc--CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcCC
Q 018116 40 ELGIADIIHSHGRPITLSELVSAL--KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDK 113 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~--~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~~ 113 (360)
+..|++.|... ++.|+.+||+.+ ++ +...+.+.|+.|...|+|+..+ .+.|++|+.+..+....
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~gi---S~~aVs~rL~~Le~~GLV~~~~------rg~Y~LT~~G~~~l~~~ 80 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRI---SKSSVSRRLKKLADHDLLQPLA------NGVYVITEEGEAYLNGE 80 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCS---CHHHHHHHHHHHHHTTSEEECS------TTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEecC------CceEEECchHHHHHHHH
Confidence 46678888653 799999999999 99 5689999999999999999875 46899999998555443
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00024 Score=48.47 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=45.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
+..|++.|...+.++|..|||+.+|+ +...+.+.+..|...|++.... .+.|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl---sr~tv~~~l~~L~~~G~I~~~~------~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPS------PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE------TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEecCC------CceEeeC
Confidence 45677888653368999999999999 5789999999999999998754 4778764
|
| >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0012 Score=48.37 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=51.9
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
.+|..-.++.|+..| . ++.++.|||+.+++ +...+.+.|+.|...|++.+.. +.|++++.+.
T Consensus 26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~i---s~~tv~~~L~~L~~~Glv~~~~-------g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSL---SKKQLDYHLKVLEAGFCIERVG-------ERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEC-------CEEEECCCch
Confidence 445555677888989 5 78999999999999 5688999999999999999874 5899988654
|
| >3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.002 Score=47.74 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=50.9
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
.+|.--.++.|+..|.. ++.++.|||+.+|+ +...+.+.|+.|...|++..... |....|++++.
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~---g~~~~y~l~~~ 82 (102)
T 3pqk_A 18 KTLSHPVRLMLVCTLVE--GEFSVGELEQQIGI---GQPTLSQQLGVLRESGIVETRRN---IKQIFYRLTEA 82 (102)
T ss_dssp HHHCSHHHHHHHHHHHT--CCBCHHHHHHHHTC---CTTHHHHHHHHHHHTTSEEEECS---SSCCEEEECSS
T ss_pred HHcCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEECcH
Confidence 45555566777888865 79999999999999 56899999999999999987652 22345888774
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.003 Score=56.96 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=61.6
Q ss_pred hHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-C-----
Q 018116 181 AIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-Y----- 250 (360)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~----- 250 (360)
+.+++++.+. ..++..+||..||.|+.+..++++. |+.+++++|. +.+++.++. .+|++++.+++.+ .
T Consensus 45 Ll~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~ 122 (347)
T 3tka_A 45 LLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAE 122 (347)
T ss_dssp TTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHH
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 4466777776 6778999999999999999999985 7889999999 888887643 5789999998755 1
Q ss_pred --CC-CccEEEec
Q 018116 251 --IP-PADAYFFK 260 (360)
Q Consensus 251 --~p-~~D~i~~~ 260 (360)
++ .+|.|++-
T Consensus 123 ~g~~~~vDgILfD 135 (347)
T 3tka_A 123 RDLIGKIDGILLD 135 (347)
T ss_dssp TTCTTCEEEEEEE
T ss_pred cCCCCcccEEEEC
Confidence 12 37777663
|
| >1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0016 Score=45.76 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=49.1
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcc-cHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTS-NLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~-~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
+-.|++.|... +|.|+.+||+.+|++ .. .+++.|..|...|+|++.+.+ .-.|++|+.+.
T Consensus 13 ~~~IL~~Lk~~-g~~ta~eiA~~Lgit---~~~aVr~hL~~Le~eGlV~~~~~g----RP~w~LT~~g~ 73 (79)
T 1xmk_A 13 KEKICDYLFNV-SDSSALNLAKNIGLT---KARDINAVLIDMERQGDVYRQGTT----PPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHT-CCEEHHHHHHHHCGG---GHHHHHHHHHHHHHTTSEEEECSS----SCEEEECHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHcCCC---cHHHHHHHHHHHHHCCCEEecCCC----CCCeEeCHhHH
Confidence 45667778774 799999999999994 56 899999999999999876521 34799999876
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0073 Score=53.50 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=65.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHC-----CCCeEEEeec-hHH--------------------------HhcCCC-----
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAF-----PGIKCTVLDL-PHA--------------------------VANMPQ----- 236 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~--------------------------~~~a~~----- 236 (360)
....+|||+|+..|..++.++... ++.+++++|. ... .+.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346799999999999998887764 4788999984 211 111111
Q ss_pred ---CCCeEEEeCCCCCC---CC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 237 ---TENLKYIAGDMFQY---IP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 237 ---~~ri~~~~~D~~~~---~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
.++|+++.||+.+. .+ .+|+|++=.-.+ +.....|..+...|+| | .++|+|.+
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~p---G-GiIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSV---G-GYVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEE---E-EEEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCC---C-EEEEEcCC
Confidence 38999999999662 32 488887643211 2245789999999999 4 56666544
|
| >3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0017 Score=57.59 Aligned_cols=60 Identities=17% Similarity=0.314 Sum_probs=49.1
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|...+++.|+.|||+++|+ +..-+.|+|+.|+..|++.++. +++|++++....|
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl---~ksTv~RlL~tL~~~G~v~~~~------~~~Y~LG~~~~~l 92 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL---PKSSAHGLLAVMTELDLLARSA------DGTLRIGPHSLRW 92 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC---C--CHHHHHHHHHHTTSEEECT------TSEEEECTHHHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC------CCcEEehHHHHHH
Confidence 5678888765468999999999999 4688999999999999999986 4789999865433
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.011 Score=52.77 Aligned_cols=130 Identities=20% Similarity=0.195 Sum_probs=74.7
Q ss_pred CCCCEEEEeCCCCchHHHH----HHHHCCCCeE--EEeechHHHhcCC------------------C--CCCe--EEEeC
Q 018116 194 EGLGSIVDVGGGNGGFSKI----ISEAFPGIKC--TVLDLPHAVANMP------------------Q--TENL--KYIAG 245 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~----l~~~~p~~~~--~~~D~~~~~~~a~------------------~--~~ri--~~~~~ 245 (360)
.+.-+|+|+|=|+|..... +.+..|..++ +.++. ..+.... . ..+| ++..+
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek-~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~G 173 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEK-ELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLG 173 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEES-SCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEES
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecH-HHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEec
Confidence 4457899999999985533 2345677654 44442 1111100 0 2344 55678
Q ss_pred CCCC---CCC--CccEEEecccc-ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhh
Q 018116 246 DMFQ---YIP--PADAYFFKLVF-HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMS 319 (360)
Q Consensus 246 D~~~---~~p--~~D~i~~~~~l-h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 319 (360)
|+.+ .++ .+|++++=..- ..-|+=.-..++++++++++| ||.+.-.
T Consensus 174 Da~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~p---gg~laTY------------------------- 225 (308)
T 3vyw_A 174 DARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDE---KGYWVSY------------------------- 225 (308)
T ss_dssp CHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEE---EEEEEES-------------------------
T ss_pred hHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCC---CcEEEEE-------------------------
Confidence 8765 233 48888763211 111111224689999999999 7765320
Q ss_pred cccCCcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEe
Q 018116 320 VSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359 (360)
Q Consensus 320 ~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
-....+++.|+++||.+.++...++-.-++.+.
T Consensus 226 -------taag~VRR~L~~aGF~V~k~~G~g~KReml~A~ 258 (308)
T 3vyw_A 226 -------SSSLSVRKSLLTLGFKVGSSREIGRKRKGTVAS 258 (308)
T ss_dssp -------CCCHHHHHHHHHTTCEEEEEECC---CEEEEEE
T ss_pred -------eCcHHHHHHHHHCCCEEEecCCCCCCCceeEEe
Confidence 023567788999999988887766554555543
|
| >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.003 Score=47.26 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=47.8
Q ss_pred cchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 43 IADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
|+..|.. ++.+..||++.+ ++ ++..+.+.|+.|...|++++.....++-.-.|++|+.|..+.
T Consensus 19 IL~~L~~--~~~~~~eLa~~l~~i---s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 19 ILXHLTH--GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp HHHHHTT--CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence 3444443 799999999999 99 579999999999999999987532222123599999887554
|
| >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0089 Score=46.84 Aligned_cols=94 Identities=14% Similarity=0.107 Sum_probs=59.0
Q ss_pred hhcchHHHHHHHHHHHHHHHHHH-----HHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceec
Q 018116 14 ELFEGHGQVIRLVFNHLSAMSLK-----GAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSK 88 (360)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~~~~L~-----~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~ 88 (360)
++.....++...+.......+-. ...++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++
T Consensus 8 ~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r 83 (142)
T 3ech_A 8 DLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLVRR 83 (142)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEee
Confidence 34444555555444333333222 24567788888774 79999999999999 56899999999999999998
Q ss_pred cccCCCCcccceecchhhhhhhc
Q 018116 89 TKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 89 ~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.....|+-.-.+.+|+.|..+..
T Consensus 84 ~~~~~DrR~~~~~LT~~G~~~~~ 106 (142)
T 3ech_A 84 ERNPSDQRSFQLFLTDEGLAIHL 106 (142)
T ss_dssp ----------CCEECHHHHHHHH
T ss_pred ccCCCCCCeeeeEECHHHHHHHH
Confidence 75211111123789998885553
|
| >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0019 Score=47.49 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=52.5
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
.+|.--.++.|+..|.. ++.|+.|||+.+|+ +...+.+.|+.|...|++..... |....|++++..
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~---g~~~~y~l~~~~ 83 (98)
T 3jth_A 18 KAMANERRLQILCMLHN--QELSVGELCAKLQL---SQSALSQHLAWLRRDGLVTTRKE---AQTVYYTLKSEE 83 (98)
T ss_dssp HHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECC---TTCCEEEECCHH
T ss_pred HHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEECHHH
Confidence 45555667888888876 79999999999999 56899999999999999988752 223458887653
|
| >2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0021 Score=48.49 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=50.6
Q ss_pred HHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 34 SLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 34 ~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
+|..-.++.|+..|.. ++.++.|||+.+|+ +...+.+.|+.|...|++..... |....|++|+.+.
T Consensus 17 ~l~~~~r~~IL~~L~~--~~~~~~ela~~l~i---s~~tv~~~l~~L~~~gli~~~~~---gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 17 ALSDETRWEILTELGR--ADQSASSLATRLPV---SRQAIAKHLNALQACGLVESVKV---GREIRYRALGAEL 82 (114)
T ss_dssp HTTCHHHHHHHHHHHH--SCBCHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECSHHH
T ss_pred HhCChHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeEEec---CCEEEEEechHHH
Confidence 3333456777787854 78999999999999 56899999999999999988652 1123488888765
|
| >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0019 Score=49.40 Aligned_cols=68 Identities=13% Similarity=0.218 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 32 AMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 32 ~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
..+|.--.++.|+..|.. ++.++.|||+.+|+ +...+.+.|+.|...|+|..... |....|++++.+.
T Consensus 12 ~~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~i---s~~tvs~hL~~L~~~GlV~~~~~---gr~~~y~l~~~~~ 79 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLSR--GPATVSELAKPFDM---ALPSFMKHIHFLEDSGWIRTHKQ---GRVRTCAIEKEPF 79 (118)
T ss_dssp HHHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECSHHH
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEec---CCEEEEEECHHHH
Confidence 355566667888888875 79999999999999 57999999999999999987652 1134588888654
|
| >1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.003 Score=48.55 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=51.7
Q ss_pred HHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 32 AMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 32 ~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
..+|.--.++.|+..|... ++.|+.|||+.+|+ +...+.+.|+.|...|++..... |....|++++.+
T Consensus 36 ~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~i---s~stvs~~L~~L~~~Glv~~~~~---gr~~~y~l~~~~ 103 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRKE---GKLALYSLGDEH 103 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-------CCEEEESCHH
T ss_pred HHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEE---CCEEEEEECHHH
Confidence 3455555678899988743 79999999999999 57999999999999999987652 112358887754
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.077 Score=53.27 Aligned_cols=148 Identities=13% Similarity=0.137 Sum_probs=101.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCC--------CCeEEEeechHHHhcCCC------------------------------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFP--------GIKCTVLDLPHAVANMPQ------------------------------ 236 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 236 (360)
+...||-+|||.=.....|...+| +++++=+|.|++++.=++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467899999999999999987755 678888898877642100
Q ss_pred CCCeEEEeCCCCCC--C-----------CC-ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 018116 237 TENLKYIAGDMFQY--I-----------PP-ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKE 302 (360)
Q Consensus 237 ~~ri~~~~~D~~~~--~-----------p~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~ 302 (360)
.++..++..|+.+. + ++ .=++++-.+|.+++.+++.++|+.+.+ + | ++.+++.|.+.+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~ 261 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP 261 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence 25899999999872 1 12 334677889999999999999999985 4 5 688999998876543
Q ss_pred cchhhhhHhHhhhhhhhcc-cC--CcccCHHHHHHHHHHCCCceeEEEee
Q 018116 303 DKHQVTEAKLLGDTLMSVS-VD--GKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 303 ~~~~~~~~~~~~d~~~~~~-~~--g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
... +... ....+..... .. ....+.++..+.|.+.||..+....+
T Consensus 262 ~d~-f~~~-m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 262 FEP-FSKQ-MLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp TSH-HHHH-HHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred CCh-HHHH-HHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 321 2111 1111111100 01 12347899999999999987766544
|
| >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0032 Score=46.18 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=54.1
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISAL 108 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 108 (360)
.++..-.++.|+..|... ++.|..|||+.+++ +...+.+.|+.|...|++.+.....++....|++|+.+..
T Consensus 11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~i---s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~ 82 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGME 82 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHH
T ss_pred cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHH
Confidence 455556677788877642 68999999999999 5689999999999999998643111111346999998863
|
| >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0031 Score=50.49 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 31 SAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 31 ~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
...+|.--.++.|+..|.. ++.++.|||+.+|+ +...+.+.|+.|...|+|..... |....|++++.+.
T Consensus 51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgl---s~stvs~hL~~L~~aGlV~~~~~---Gr~~~y~lt~~~~ 119 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPA---SRSAISQHLRVLTEAGLVTPRKD---GRFRYYRLDPQGL 119 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec---CCEEEEEEChHHH
Confidence 3466666778999999985 79999999999999 57999999999999999988752 1123599998765
|
| >3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0037 Score=45.74 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=51.6
Q ss_pred HHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 34 SLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 34 ~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
++..-.++.|+..|.. +++.|..|||+.+|+ +...+.+.|+.|...|++..... |....|++++.+.
T Consensus 20 ~l~~~~~~~il~~l~~-~~~~s~~ela~~l~i---s~~tvs~~l~~L~~~glv~~~~~---~r~~~y~l~~~~~ 86 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSG-SPGTSAGELTRITGL---SASATSQHLARMRDEGLIDSQRD---AQRILYSIKNEAV 86 (99)
T ss_dssp HHCSHHHHHHHHHHTT-CCSEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEEC---SSCEEEEECCHHH
T ss_pred HhCChHHHHHHHHHHh-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec---CCEEEEEEChHHH
Confidence 4444556778888865 369999999999999 56899999999999999988752 1123488877653
|
| >4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.006 Score=47.42 Aligned_cols=83 Identities=12% Similarity=0.021 Sum_probs=61.5
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCC
Q 018116 15 LFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGG 93 (360)
Q Consensus 15 ~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~ 93 (360)
..-+....++++.+-|...+|... .. ++.++.||++.+ |+ ++..|.+.|+.|...|+|++....+
T Consensus 12 ~~Cpi~~~l~~lg~kW~l~IL~~L---------~~--g~~rf~eL~~~l~gI---s~~~Ls~~L~~Le~~GLV~R~~~~~ 77 (131)
T 4a5n_A 12 EGSPVEFTLDVIGGKWKGILFYHM---------ID--GKKRFNEFRRICPSI---TQRMLTLQLRELEADGIVHREVYHQ 77 (131)
T ss_dssp -CCHHHHHHHHHCSSSHHHHHHHH---------TT--SCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred CCCcHHHHHHHHcCcCHHHHHHHH---------hc--CCcCHHHHHHHhccc---CHHHHHHHHHHHHHCCCEEEEecCC
Confidence 344566777777777766666543 22 799999999999 99 5799999999999999999875321
Q ss_pred CCcccceecchhhhhhhc
Q 018116 94 EKEEEAYGLTAISALLIK 111 (360)
Q Consensus 94 ~~~~~~y~~t~~~~~l~~ 111 (360)
+.-...|++|+.|..|.+
T Consensus 78 d~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 78 VPPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp SSCEEEEEECTTGGGGHH
T ss_pred CCCeEEEEECHhHHHHHH
Confidence 111235999999987764
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.02 Score=52.53 Aligned_cols=106 Identities=13% Similarity=0.125 Sum_probs=73.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC------------CCCCeEEEeCCCCC--C-CC-Ccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP------------QTENLKYIAGDMFQ--Y-IP-PAD 255 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~ri~~~~~D~~~--~-~p-~~D 255 (360)
..++.+|||+-+|.|+=+.++++..++..++.+|+ +.-++..+ ...++.+...|... . .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56788999999999999999998877778899998 54433221 14678899888765 1 23 599
Q ss_pred EEEe----cc----c-------cccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 256 AYFF----KL----V-------FHAFGDED-------CLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 256 ~i~~----~~----~-------lh~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
.|++ +. + ...+..++ -.++|+++.+.|+| ||+|+-........
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsTCSl~~~ 290 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYSTCSLSHL 290 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEESCCCTT
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCCCchh
Confidence 9986 21 1 12222222 24789999999999 88776555554443
|
| >3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0026 Score=55.90 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=50.3
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|...+++.|+.|||+++|+ +..-+.|+|+.|+..|++.++.. .++|++++....|
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl---~ksT~~RlL~tL~~~G~v~~~~~-----~~~Y~lG~~~~~l 69 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM---NKATVYRLMSELQEAGFVEQVEG-----ARSYRLGPQVLRL 69 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEECSS-----SSEEEECTTHHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCcEEcCHHHHHH
Confidence 4577788754478999999999999 56899999999999999999862 3789998865433
|
| >3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0046 Score=46.65 Aligned_cols=76 Identities=16% Similarity=0.265 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCC--HHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCC
Q 018116 18 GHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPIT--LSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGE 94 (360)
Q Consensus 18 ~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t--~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~ 94 (360)
+...+++.+.+.|...+|. .|.. ++.+ +.||++.+ |+ ++..+.+.|+.|...|+|++...
T Consensus 16 ~~~~~l~~l~~~wrl~IL~---------~L~~--g~~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~--- 78 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLIIS---------VLGN--GSTRQNFNDIRSSIPGI---SSTILSRRIKDLIDSGLVERRSG--- 78 (111)
T ss_dssp TTSSTHHHHHSTTHHHHHH---------HHTS--SSSCBCHHHHHHTSTTC---CHHHHHHHHHHHHHTTSEEEEES---
T ss_pred HHHHHHHHHcCccHHHHHH---------HHhc--CCCCCCHHHHHHHccCC---CHHHHHHHHHHHHHCCCEEEeec---
Confidence 4455666666666555554 3433 6777 99999999 99 57999999999999999998741
Q ss_pred Ccccceecchhhhhhhc
Q 018116 95 KEEEAYGLTAISALLIK 111 (360)
Q Consensus 95 ~~~~~y~~t~~~~~l~~ 111 (360)
-...|++|+.|..+.+
T Consensus 79 -r~~~y~LT~~G~~l~~ 94 (111)
T 3df8_A 79 -QITTYALTEKGMNVRN 94 (111)
T ss_dssp -SSEEEEECHHHHHHHH
T ss_pred -CcEEEEECccHHHHHH
Confidence 1357999999986653
|
| >1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0056 Score=46.21 Aligned_cols=63 Identities=22% Similarity=0.199 Sum_probs=48.2
Q ss_pred cchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 43 IADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
|+..|.. ++.+..|||+.+ ++ +...+.+.|+.|...|+|++.....++-.-.|++|+.|..+.
T Consensus 27 IL~~L~~--~~~~~~eLa~~l~~i---s~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 27 LMDELFQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALY 90 (112)
T ss_dssp HHHHHHH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHH
T ss_pred HHHHHHh--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHH
Confidence 4444544 689999999999 99 579999999999999999987532212123499999988554
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.016 Score=50.92 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=60.0
Q ss_pred cCCCCEEEEeCC------CCchHHHHHHHHCCC-CeEEEeechHHHhcCCCCCCeEEEeCCCCC-C-CCCccEEEecc--
Q 018116 193 FEGLGSIVDVGG------GNGGFSKIISEAFPG-IKCTVLDLPHAVANMPQTENLKYIAGDMFQ-Y-IPPADAYFFKL-- 261 (360)
Q Consensus 193 ~~~~~~iLDvG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~-~-~p~~D~i~~~~-- 261 (360)
.+.+.+|||+|+ -.|.. .+.+..|. ..++.+|+.++...+. .++.+|+.+ . ...+|+|++=.
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~-----~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDAD-----STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSS-----EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCC-----eEEEccccccccCCCCCEEEecCCC
Confidence 356789999996 56663 44455776 6999999954443321 458899765 2 23699998721
Q ss_pred -ccccCC------hhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 262 -VFHAFG------DEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 262 -~lh~~~------~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.--+.. ..-+..+|.=+.+.|+| ||.+++
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvV 215 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAV 215 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEE
Confidence 111111 12366778888899999 888877
|
| >2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0039 Score=54.07 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=50.0
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+.|++.|...+++.|+.|||+.+|+ +..-+.|+|+.|...|+++++.. +++|++++....|.
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~~-----~~~Y~lg~~~~~lg 70 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGL---PRSTVQRIINALEEEFLVEALGP-----AGGFRLGPALGQLI 70 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTS---CHHHHHHHHHHHHTTTSEEECGG-----GCEEEECSHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-----CCeEEECHHHHHHH
Confidence 4566777654358999999999999 56899999999999999999752 47899998665443
|
| >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0039 Score=46.56 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=49.6
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
.+|..-.++.|+..|.. ++.++.|||+.+|+ +...+.+.|+.|...|++..... |....|++++..
T Consensus 21 ~~l~~~~r~~IL~~L~~--~~~~~~ela~~l~i---s~stvs~~L~~L~~~Glv~~~~~---gr~~~y~l~~~~ 86 (106)
T 1r1u_A 21 KALGDYNRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKRQ---GQSMIYSLDDIH 86 (106)
T ss_dssp HHTCSHHHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEESSHH
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEEChHH
Confidence 34444456677777775 78999999999999 56899999999999999987652 112347776643
|
| >2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0075 Score=47.88 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.+..||++.+|+ +...+.+.|+.|...|++++.....++ ...|++|+.|..+.
T Consensus 36 g~~~~~eLa~~lgi---s~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 36 GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTDKGRALF 90 (146)
T ss_dssp TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECHHHHTTH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECchHHHHH
Confidence 68999999999999 579999999999999999987632223 34799999987554
|
| >1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0075 Score=46.92 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=58.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCCC
Q 018116 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEK 95 (360)
Q Consensus 17 ~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~ 95 (360)
-+...+++++.+.|...+|.. |.. ++.+..||++.+ |+ ++..+.+.|+.|...|+|++.....++
T Consensus 23 c~~~~~l~~l~~~w~l~IL~~---------L~~--g~~~~~eLa~~l~gi---s~~tls~~L~~Le~~GlV~r~~~~~d~ 88 (131)
T 1yyv_A 23 CPSREVLKHVTSRWGVLILVA---------LRD--GTHRFSDLRRXMGGV---SEXMLAQSLQALEQDGFLNRVSYPVVP 88 (131)
T ss_dssp CTHHHHHHHHHSHHHHHHHHH---------GGG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEECSSS
T ss_pred CCHHHHHHHHcCCcHHHHHHH---------HHc--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCcEEEEecCCCC
Confidence 455666776666666555443 333 799999999999 79 579999999999999999986532111
Q ss_pred cccceecchhhhhhh
Q 018116 96 EEEAYGLTAISALLI 110 (360)
Q Consensus 96 ~~~~y~~t~~~~~l~ 110 (360)
-.-.|++|+.|..+.
T Consensus 89 r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 89 PHVEYSLTPLGEQVS 103 (131)
T ss_dssp CEEEEEECHHHHHHH
T ss_pred CeEEEEECccHHHHH
Confidence 123599999988665
|
| >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0022 Score=48.20 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=49.1
Q ss_pred HHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 34 SLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 34 ~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
+|..-.++.|+..|.. ++.|+.|||+.+|+ ++..+.+.|+.|...|++..... |....|++++.+
T Consensus 21 al~~~~r~~IL~~L~~--~~~s~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~~---gr~~~y~l~~~~ 85 (108)
T 2kko_A 21 ALANGRRLQILDLLAQ--GERAVEAIATATGM---NLTTASANLQALKSGGLVEARRE---GTRQYYRIAGED 85 (108)
T ss_dssp HHTTSTTHHHHHHHTT--CCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEEE---TTEEEEEESCHH
T ss_pred HhCCHHHHHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEEChHH
Confidence 3333445667777764 79999999999999 56899999999999999987652 112357777654
|
| >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0062 Score=53.04 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=49.1
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|...+++.|+.|||+.+|+ +...+.|+|+.|...|+++++. +++|++++....+
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~------~~~Y~lg~~~~~l 70 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK------DKRYVPGYKLIEY 70 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECTHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEECC------CCcEEECHHHHHH
Confidence 4566777654358999999999999 5689999999999999999984 5889998865433
|
| >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.02 Score=44.51 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=52.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++.+.....++-...|.+|+.|..+.
T Consensus 33 ~~~iL~~l~~~-~~~~~~ela~~l~i---s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 33 RYSILQTLLKD-APLHQLALQERLQI---DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 56677778653 68999999999999 578999999999999999987532222223599999998666
|
| >2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0062 Score=45.49 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=56.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCCC
Q 018116 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEK 95 (360)
Q Consensus 17 ~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~ 95 (360)
-+...+++.+.+.+...+|. .|.. ++.+..||++.+ |+ ++..+.+.|+.|...|+|++.....++
T Consensus 13 c~~~~~l~~l~~~~~~~IL~---------~L~~--~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~~~d~ 78 (107)
T 2fsw_A 13 CPVRKSMQIFAGKWTLLIIF---------QINR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPEVP 78 (107)
T ss_dssp CHHHHHHHHHTSSSHHHHHH---------HHTT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred CCHHHHHHHHcCccHHHHHH---------HHHh--CCcCHHHHHHHcccC---CHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 34555555555555544443 4433 789999999999 49 579999999999999999987532211
Q ss_pred cccceecchhhhhhh
Q 018116 96 EEEAYGLTAISALLI 110 (360)
Q Consensus 96 ~~~~y~~t~~~~~l~ 110 (360)
-.-.|.+|+.|..+.
T Consensus 79 r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 79 PRVEYSLTPLGEKVL 93 (107)
T ss_dssp CEEEEEECHHHHTTH
T ss_pred CeeEEEECccHHHHH
Confidence 123599999987554
|
| >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0062 Score=53.41 Aligned_cols=60 Identities=13% Similarity=0.283 Sum_probs=48.6
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|...+++.|+.|||+++|+ +..-+.|+|+.|...|++.++. +++|++++....|
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl---~kstv~r~l~tL~~~G~v~~~~------~~~Y~lg~~~~~l 85 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL---PKTTVVRLVATMCARSVLTSRA------DGSYSLGPEMLRW 85 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECHHHHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC------CCeEEecHHHHHH
Confidence 4566777543369999999999999 5689999999999999999985 3489998865433
|
| >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0061 Score=42.63 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=45.4
Q ss_pred HhCcchhhhhCCC---CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 40 ELGIADIIHSHGR---PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 40 ~l~lf~~L~~~~~---~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
+..|++.|... + +.|+.|||+++|+ +...+.+.|..|...|++...+. ..+.|..++
T Consensus 16 ~~~IL~~L~~~-~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~~~G~I~~~g~----~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEEL-GEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG----TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHH-CSSSCEEHHHHHHHHCC---CHHHHHHHHHHHHHHTSEEEECS----SSCEEEECC
T ss_pred HHHHHHHHHHc-CCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC----CCCceEecC
Confidence 56677777663 4 8999999999999 56899999999999999988752 146676654
|
| >1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.009 Score=43.62 Aligned_cols=47 Identities=13% Similarity=0.262 Sum_probs=43.0
Q ss_pred CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 54 ITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 54 ~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
.+..+||..+|+ +++.+...++.|...|++++.. +.|.+|+.|..+.
T Consensus 21 ~~~t~La~~~~l---s~~~~~~~l~~L~~~GLI~~~~-------~~~~LT~kG~~~l 67 (95)
T 1r7j_A 21 SPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQEG-------KQYMLTKKGEELL 67 (95)
T ss_dssp BCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECHHHHHHH
T ss_pred CCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEC-------CeeEEChhHHHHH
Confidence 899999999999 5799999999999999999984 6799999998554
|
| >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.012 Score=45.61 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=51.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++.+.....++-.-.|.+|+.|..+..
T Consensus 35 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (139)
T 3bja_A 35 QFGVIQVLAKS-GKVSMSKLIENMGC---VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKK 102 (139)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHCSS---CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHH
Confidence 56677777664 78999999999999 5689999999999999999864211111223889999886553
|
| >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0074 Score=42.44 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=47.2
Q ss_pred HHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 38 AVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 38 a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
.....|.+.|.. .+.|+.|||+++|+ +...+++.|..|...|++.... +++-.|+++...
T Consensus 17 ~~~~~IL~lL~~--~g~sa~eLAk~Lgi---Sk~aVr~~L~~Le~eG~I~~~~----~~PP~W~~~~~~ 76 (82)
T 1oyi_A 17 EIVCEAIKTIGI--EGATAAQLTRQLNM---EKREVNKALYDLQRSAMVYSSD----DIPPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHSS--STEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEECS----SSSCEEESCC--
T ss_pred HHHHHHHHHHHH--cCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCC----CCCCcceeccCc
Confidence 345667778875 34999999999999 5789999999999999999975 335678877654
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.015 Score=53.18 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=44.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC---CCCCeEEEeCCCCC
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP---QTENLKYIAGDMFQ 249 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~~ri~~~~~D~~~ 249 (360)
+...|||||.|.|.++..|+++....+++++++ +..+...+ ..++++++.+|+++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 358999999999999999998754568999988 66554433 35799999999975
|
| >2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0081 Score=52.55 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=49.6
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+.|++.|...+++.|+.|||+.+|+ +..-+.|+|+.|...|+++++ +++|++++....|.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~~L~~~G~v~~~-------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL---SRPAVRRILLTLQKLGYVAGS-------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC-------CCEEEEcHHHHHHH
Confidence 4566777643468999999999999 568999999999999999987 38899998765554
|
| >1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.011 Score=41.79 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=45.0
Q ss_pred HhCcchhhhhCCC---CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 40 ELGIADIIHSHGR---PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 40 ~l~lf~~L~~~~~---~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
+..|++.|... + +.|+.|||+++|+ +..-+.+.|..|...|++...+. ..+.|.+.+...
T Consensus 12 ~~~IL~~L~~~-~pg~~~t~~eLA~~Lgv---sr~tV~~~L~~Le~~G~I~~~g~----~~~~W~i~~~~~ 74 (81)
T 1qbj_A 12 EQRILKFLEEL-GEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG----TPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHH-CTTCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEESS----SSCEEEEC----
T ss_pred HHHHHHHHHHc-CCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC----CCCeeEEeCcHH
Confidence 55566777653 4 7999999999999 56889999999999999998752 246788776554
|
| >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.016 Score=45.46 Aligned_cols=69 Identities=9% Similarity=0.074 Sum_probs=52.8
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++.++..|... ++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 100 (145)
T 3g3z_A 32 NLFAVLYTLATE-GSRTQKHIGEKWSL---PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAA 100 (145)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHH
Confidence 356677778654 68999999999999 5689999999999999999864211111234899999886653
|
| >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.01 Score=45.58 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=50.5
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
.+|.--.++.|+..|.. ++.++.|||+.+|+ +...+.+.|+.|...|++..... |....|++++..
T Consensus 41 kaL~~~~rl~IL~~L~~--~~~s~~ela~~lgi---s~stvs~~L~~Le~~Glv~~~~~---gr~~~y~l~~~~ 106 (122)
T 1r1t_A 41 AVLADPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRKQ---GRHVYYQLQDHH 106 (122)
T ss_dssp HHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEESSHH
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEEChHH
Confidence 34444457788888875 79999999999999 57999999999999999987652 112347776653
|
| >2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0075 Score=42.08 Aligned_cols=45 Identities=18% Similarity=0.424 Sum_probs=37.6
Q ss_pred cchhhhhC-----CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 43 IADIIHSH-----GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 43 lf~~L~~~-----~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
|++.|... ++|.|+.|||+.+|+ ++..+++-|..|...|++.+..
T Consensus 9 IL~~I~~~i~~~~g~~psv~EIa~~lgv---S~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 9 IISIVQERQNMDDGAPVKTRDIADAAGL---SIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHhhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence 44555443 479999999999999 5678999999999999999985
|
| >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.018 Score=46.24 Aligned_cols=68 Identities=10% Similarity=0.086 Sum_probs=52.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 48 q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 48 QFTALSVLAAK-PNLSNAKLAERSFI---KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHH
Confidence 45677788764 79999999999999 5689999999999999999875322111124899999986653
|
| >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.012 Score=46.17 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.|..+||+.+++ +...+.+.++.|...|+|.+.. ...|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v---s~~tvs~~l~~Le~~Glv~r~~------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK------YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEee------CceEEEchhHHHHH
Confidence 68999999999999 5689999999999999999985 47899999987554
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.018 Score=51.45 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=34.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP 235 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 235 (360)
.++..|||++||+|.++.++++. +.+++++|+ +.+++.++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~ 274 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAK 274 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 46789999999999999998876 679999999 88887765
|
| >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.048 Score=43.60 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=51.5
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 55 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 122 (161)
T 3e6m_A 55 KLRLLSSLSAY-GELTVGQLATLGVM---EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLA 122 (161)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHH
Confidence 45577777654 69999999999999 5689999999999999999875322111234889999886553
|
| >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.008 Score=42.50 Aligned_cols=49 Identities=14% Similarity=0.383 Sum_probs=41.5
Q ss_pred HHhCcchhhhhCC-CCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 39 VELGIADIIHSHG-RPITLSELVSAL-----KIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 39 ~~l~lf~~L~~~~-~~~t~~ela~~~-----~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.+..|++.|...+ ++.|++||++.+ ++ +..-+.|.|+.|...|++.+..
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i---s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI---GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCeEEEe
Confidence 3566888887643 589999999999 88 5789999999999999999865
|
| >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.011 Score=51.13 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=51.6
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..|||+.+|+ +...+.|.|+.|...|++++.+. ...|++|+.+..+..
T Consensus 154 ~~~IL~~L~~~-~~~s~~eLA~~lgl---sksTv~r~L~~Le~~GlV~r~~r-----~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 154 EMKLLNVLYET-KGTGITELAKMLDK---SEKTLINKIAELKKFGILTQKGK-----DRKVELNELGLNVIK 216 (244)
T ss_dssp HHHHHHHHHHH-TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEETT-----TTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-----ccEEEECHHHHHHHH
Confidence 45566666543 79999999999999 57899999999999999999752 467999999986653
|
| >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.008 Score=52.84 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=47.8
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
+.|++.|...+++.|+.|||+++|+ +..-+.|+|+.|...|+++++ +++|++++...
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~tL~~~G~v~~~-------~~~Y~Lg~~~~ 80 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL---TRATARRFLLTLVELGYVATD-------GSAFWLTPRVL 80 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEES-------SSEEEECGGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEec-------CCEEEEcHHHH
Confidence 4567777643468999999999999 568999999999999999997 38899988644
|
| >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.012 Score=46.29 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=50.4
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|...|+|++.....|+-...+.+|+.|..+..
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~ 109 (148)
T 3nrv_A 41 TEWRIISVLSSA-SDCSVQKISDILGL---DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
T ss_dssp HHHHHHHHHHHS-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHH
Confidence 356677777764 69999999999999 5699999999999999999874211111245899999886553
|
| >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.028 Score=44.55 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=50.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....++-.-.+.+|+.|..+..
T Consensus 45 ~~~iL~~l~~~-~~~t~~ela~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 112 (155)
T 3cdh_A 45 EWRVLACLVDN-DAMMITRLAKLSLM---EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAE 112 (155)
T ss_dssp HHHHHHHHSSC-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHH
Confidence 56677777653 79999999999999 5799999999999999999864211111234889999886553
|
| >3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.043 Score=43.74 Aligned_cols=67 Identities=18% Similarity=0.109 Sum_probs=50.4
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.++..|... ++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 53 ~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 119 (159)
T 3s2w_A 53 FPFLMRLYRE-DGINQESLSDYLKI---DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEP 119 (159)
T ss_dssp HHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHH
Confidence 4556667654 79999999999999 5699999999999999999875322111224889999886553
|
| >2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.038 Score=40.06 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=45.7
Q ss_pred chhhhhCCCCCCHHHHHHHcCCCCCCccc-HHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 44 ADIIHSHGRPITLSELVSALKIQPTKTSN-LFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 44 f~~L~~~~~~~t~~ela~~~~~~p~~~~~-l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+..|...+.+.|..|||+.+++ +... +.++++.|...|++..+.. ++-...+.+|+.|..+..
T Consensus 21 L~~l~~~~~~~t~~eLa~~l~i---s~~t~vs~~l~~Le~~Glv~~~~~--drR~~~~~LT~~G~~~~~ 84 (95)
T 2pg4_A 21 LLEFEKKGYEPSLAEIVKASGV---SEKTFFMGLKDRLIRAGLVKEETL--SYRVKTLKLTEKGRRLAE 84 (95)
T ss_dssp HHHHHHTTCCCCHHHHHHHHCC---CHHHHHTTHHHHHHHTTSEEEEEE--ETTEEEEEECHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHCC---CchHHHHHHHHHHHHCCCeecCCC--CCCeEEEEECHhHHHHHH
Confidence 3444443238999999999999 5688 9999999999999994421 111234889999886553
|
| >1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.014 Score=40.80 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=38.7
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
|.+.|... +.+++.|||+.+++ ++.-++|.|+.|...|++.+.
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~V---S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 56677764 89999999999999 579999999999999999998
|
| >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.027 Score=44.06 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=51.5
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++.++..|... ++ |..+||+.+++ +...+.+.++.|...|++++.....|+-.-.+.+|+.|..+..
T Consensus 38 ~~~~iL~~l~~~-~~-~~~~la~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (144)
T 3f3x_A 38 LDFSILKATSEE-PR-SMVYLANRYFV---TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLL 105 (144)
T ss_dssp HHHHHHHHHHHS-CE-EHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC-CC-CHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHH
Confidence 356788888774 45 99999999999 5799999999999999999875211000114899999886653
|
| >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.01 Score=46.54 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=51.6
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+-.-.+.+|+.|..+..
T Consensus 39 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 106 (143)
T 3oop_A 39 QWSVLEGIEAN-EPISQKEIALWTKK---DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETT 106 (143)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHH
Confidence 56677777654 79999999999999 5699999999999999999865222121234889999886653
|
| >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.017 Score=42.29 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=50.0
Q ss_pred HhCcchhhhhCCCCCCHHHH----HHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSEL----VSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~el----a~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.+..+| |+.+++ +...+.++++.|...|++++.... ....|.+|+.|..+..
T Consensus 10 q~~iL~~l~~~-~~~~~~el~~~la~~l~i---s~~tvs~~l~~Le~~gli~r~~~~---r~~~~~LT~~G~~~~~ 78 (99)
T 1tbx_A 10 EAIVLAYLYDN-EGIATYDLYKKVNAEFPM---STATFYDAKKFLIQEGFVKERQER---GEKRLYLTEKGKLFAI 78 (99)
T ss_dssp HHHHHHHHTTC-TTCBHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCEEEEecC---CceEEEECHHHHHHHH
Confidence 34456666553 78999999 999999 579999999999999999986420 1345899999886653
|
| >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.051 Score=42.93 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=51.3
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceec--cccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSK--TKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~--~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++ .....++-.-.+.+|+.|..+..
T Consensus 43 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~ 112 (154)
T 2qww_A 43 QLAMINVIYST-PGISVADLTKRLII---TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSK 112 (154)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHH
Confidence 56677777764 78999999999999 56899999999999999998 43211111124899999886553
|
| >2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.053 Score=43.74 Aligned_cols=68 Identities=22% Similarity=0.270 Sum_probs=52.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|+|.+.....++-.-.+.+|+.|..+..
T Consensus 47 ~~~iL~~L~~~-~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 114 (168)
T 2nyx_A 47 QFRTLVILSNH-GPINLATLATLLGV---QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVR 114 (168)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 56677778663 69999999999999 5799999999999999999864221111223889999885553
|
| >2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.023 Score=43.92 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
++.|..|||+.+++ +...+.++|+.|...|+++... |..+.|.++...
T Consensus 25 ~~~s~~ela~~~~i---~~~~v~~il~~L~~~Glv~~~~----g~~ggy~L~~~~ 72 (129)
T 2y75_A 25 GPTSLKSIAQTNNL---SEHYLEQLVSPLRNAGLVKSIR----GAYGGYVLGSEP 72 (129)
T ss_dssp CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEC--------CCEEESSCG
T ss_pred CcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEecC----CCCCceEeCCCH
Confidence 68999999999999 5699999999999999998764 113678886643
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.11 Score=50.45 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=66.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-------------CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-------------PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YI 251 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~ 251 (360)
...+.+|+|-.||+|.++....+.. ....+.|+|+ +.+...++. .+.-++..+|... +.
T Consensus 215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~ 294 (530)
T 3ufb_A 215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPL 294 (530)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCG
T ss_pred cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCch
Confidence 3456799999999999998766532 1356899999 777665542 3445677888765 21
Q ss_pred ------CCccEEEecccccc---------CC-----hhHHHHHHHHHHHhccCC----CCCcEEEEEee
Q 018116 252 ------PPADAYFFKLVFHA---------FG-----DEDCLKILKKCREAIAGN----GERGKVLIMDI 296 (360)
Q Consensus 252 ------p~~D~i~~~~~lh~---------~~-----~~~~~~~L~~~~~~L~p~----~~gG~lli~e~ 296 (360)
..||+|+++=-+-. ++ .+.....+..+.+.|++. ++||++.++-+
T Consensus 295 ~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 295 REMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp GGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred hhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 25999998544321 11 111234677777777620 12898887653
|
| >2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.013 Score=41.79 Aligned_cols=44 Identities=11% Similarity=0.211 Sum_probs=39.1
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
|.+.|... +.+++.|||+.+++ ++.-++|.|+.|...|++.+..
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~V---S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQT---PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTC---CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 56677764 89999999999999 5799999999999999999984
|
| >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.0097 Score=46.28 Aligned_cols=68 Identities=9% Similarity=0.086 Sum_probs=51.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-...|.+|+.|..+..
T Consensus 40 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (140)
T 2nnn_A 40 QWAALVRLGET-GPCPQNQLGRLTAM---DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELE 107 (140)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHTTC---CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHH
Confidence 56778888653 69999999999999 5799999999999999999864211111124889999886553
|
| >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.028 Score=44.03 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=51.6
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++.++..|....++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.+.+|+.|..+..
T Consensus 36 ~~~~iL~~l~~~~~~~~~~~la~~l~i---~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (147)
T 2hr3_A 36 SQLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLY 105 (147)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHH
Confidence 356777777651279999999999999 5799999999999999999864211111223889998886553
|
| >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.028 Score=43.93 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=51.4
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|. . ++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.+.+|+.|..+..
T Consensus 39 ~~~iL~~l~-~-~~~~~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 105 (146)
T 2gxg_A 39 DFLVLRATS-D-GPKTMAYLANRYFV---TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFN 105 (146)
T ss_dssp HHHHHHHHT-T-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHh-c-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHH
Confidence 566777777 3 79999999999999 5689999999999999999864211111224889998885553
|
| >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.084 Score=41.50 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=51.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....++-.-.+.+|+.|..+.
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 42 QRAILEGLSLT-PGATAPQLGAALQM---KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 46677777764 69999999999999 578999999999999999986521111122588999887554
|
| >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.047 Score=42.99 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=49.1
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++.++..|...++++|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 109 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGL---DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRD 109 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTC---CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHH
Confidence 356677777654457899999999999 5799999999999999999865211111123889998886553
|
| >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.02 Score=40.31 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=38.1
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
..|++.|... ++.|..|||+.+|+ +...+.+.|+.|...|++.+.
T Consensus 3 ~~Il~~L~~~-~~~s~~eLa~~lgv---s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRH-NGGKTAEIAEALAV---TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHS-CCCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 3466677653 78999999999999 568999999999999999854
|
| >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.024 Score=44.09 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=51.0
Q ss_pred HhCcchhhhhCCC-CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGR-PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~-~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...++ +.|..+||+.+++ +...+.+.++.|...|++++.....++-...+.+|+.|..+..
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~ 105 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLET 105 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHH
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCC---CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHH
Confidence 4556777766422 8999999999999 5689999999999999999865211111224888998875543
|
| >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.1 Score=41.08 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=48.5
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc--cCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK--VGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~--~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..| . .++.|..+||+.+++ +...+.++++.|...|++.+.. ...|+-.-.+.+|+.|..+..
T Consensus 40 q~~iL~~l-~-~~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~ 108 (151)
T 3kp7_A 40 QSHVLNML-S-IEALTVGQITEKQGV---NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIK 108 (151)
T ss_dssp HHHHHHHH-H-HSCBCHHHHHHHHCS---CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHH
T ss_pred HHHHHHHH-H-cCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHH
Confidence 45577888 4 389999999999999 5689999999999999999731 111111224789998886653
|
| >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.019 Score=44.93 Aligned_cols=68 Identities=10% Similarity=0.078 Sum_probs=51.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++.+.....++-.-.+.+|+.|..+..
T Consensus 31 ~~~iL~~l~~~-~~~t~~~la~~l~~---s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 98 (144)
T 1lj9_A 31 QYLYLVRVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP 98 (144)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC-cCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHH
Confidence 45567777664 68999999999999 5799999999999999999865321111223889999886553
|
| >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.015 Score=45.50 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=50.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+-.-.+.+|+.|..+..
T Consensus 38 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (140)
T 3hsr_A 38 GYIVLMAIEND-EKLNIKKLGERVFL---DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKS 105 (140)
T ss_dssp HHHHHHHSCTT-CEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHH
Confidence 45667777653 79999999999999 5699999999999999999875322111234899999886653
|
| >3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.065 Score=42.61 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=50.1
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...+++.|..+||+.+++ +...+.++++.|...|++++.....++-.-.+.+|+.|..+..
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i---~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 117 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKV---TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFK 117 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSS---CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHH
Confidence 56678888322479999999999999 5689999999999999999864211111123889999886553
|
| >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.022 Score=44.28 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=51.8
Q ss_pred HhCcchhhhhCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHG-RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~-~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...+ ++.|..+||+.+++ +...+.++++.|...|++++.....|+-.-.+.+|+.|..+..
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~ 102 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAKALQR---TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVE 102 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHH
Confidence 566777776642 49999999999999 5689999999999999999875222111234889999886653
|
| >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.024 Score=43.90 Aligned_cols=68 Identities=22% Similarity=0.195 Sum_probs=51.3
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....++-.-.+.+|+.|..+..
T Consensus 36 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 103 (138)
T 1jgs_A 36 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHH
Confidence 45566677653 68999999999999 5799999999999999999864211111223889999886553
|
| >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.024 Score=44.36 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=50.8
Q ss_pred HhCcchhh-hhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 40 ELGIADII-HSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 40 ~l~lf~~L-~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.++..| .. .++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~-~~~~t~~~la~~l~~---s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 39 RWLVLLHLARH-RDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHHHHHHC-SSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 45567777 43 379999999999999 568999999999999999987521111122488898887554
|
| >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.015 Score=46.97 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=50.6
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...+++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 123 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 123 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHH
Confidence 56677777653368999999999999 5799999999999999999875211111134889998886653
|
| >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.024 Score=44.69 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=51.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-...+.+|+.|..+..
T Consensus 44 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 111 (150)
T 2rdp_A 44 QFVALQWLLEE-GDLTVGELSNKMYL---ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIE 111 (150)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHH
Confidence 45667777653 69999999999999 5799999999999999999864211111234889998886553
|
| >2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.03 Score=44.47 Aligned_cols=68 Identities=18% Similarity=0.115 Sum_probs=51.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.|.+|+.+..+..
T Consensus 46 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 113 (154)
T 2eth_A 46 ELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG 113 (154)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHH
Confidence 56677777653 68999999999999 5789999999999999999864211121234889998886553
|
| >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.027 Score=45.02 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=49.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|+|++.....++-...|.+|+.|..+..
T Consensus 51 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 118 (162)
T 2fa5_A 51 EWRVITILALY-PGSSASEVSDRTAM---DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYE 118 (162)
T ss_dssp HHHHHHHHHHS-TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHH
Confidence 56677788763 79999999999999 5689999999999999999864211111234889998886553
|
| >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.032 Score=43.51 Aligned_cols=68 Identities=15% Similarity=0.288 Sum_probs=52.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.+.+|+.+..+..
T Consensus 39 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (142)
T 2bv6_A 39 QFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP 106 (142)
T ss_dssp HHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHH
Confidence 56677777764 68999999999999 5688999999999999999875211111225888998885553
|
| >4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.049 Score=42.89 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=50.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 43 q~~iL~~l~~~-~~~~~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 110 (149)
T 4hbl_A 43 QYLVMLTLWEE-NPQTLNSIGRHLDL---SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQE 110 (149)
T ss_dssp HHHHHHHHHHS-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHH
Confidence 56777778664 79999999999999 5699999999999999999875211111224889999886553
|
| >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.094 Score=41.35 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=51.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++.+.....++-.-.+.+|+.+..+..
T Consensus 39 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (155)
T 1s3j_A 39 QLFVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 106 (155)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHH
Confidence 45567777653 68999999999999 5799999999999999999875211111124889998875543
|
| >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.022 Score=44.07 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=50.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.+.+|+.+..+..
T Consensus 31 ~~~iL~~l~~~-~~~~~~ela~~l~~---s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~ 98 (138)
T 3bpv_A 31 QVACLLRIHRE-PGIKQDELATFFHV---DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIP 98 (138)
T ss_dssp HHHHHHHHHHS-TTCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHH
Confidence 45567777664 79999999999999 5789999999999999999864211010123888998875553
|
| >3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.031 Score=43.75 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=47.6
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
.++.++..|... + .|..|||+.+++ +...+.++++.|...|+|++.....|+-.-.|.+|+.+..+.
T Consensus 39 ~~~~iL~~l~~~-~-~t~~eLa~~l~~---s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 39 TQEHILMLLSEE-S-LTNSELARRLNV---SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHTTC-C-CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHHHhC-C-CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 356677777763 4 999999999999 568999999999999999986521112123488888887554
|
| >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.035 Score=43.22 Aligned_cols=50 Identities=24% Similarity=0.319 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+++.|..+||+.+++ +...+.+.++.|...|++.+.. ..|.+|+.+..+.
T Consensus 29 ~~~~s~~ela~~l~i---s~~tv~~~l~~Le~~Gli~r~~-------~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI---APSSVFEEVSHLEEKGLVKKKE-------DGVWITNNGTRSI 78 (139)
T ss_dssp TSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEecC-------CeEEEChhHHHHH
Confidence 378999999999999 5689999999999999999873 6799999887554
|
| >3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.03 Score=44.77 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=51.6
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....++-.-.|.+|+.+..+.
T Consensus 54 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 54 KMRALAILSAK-DGLPIGTLGIFAVV---EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 56678888764 79999999999999 578999999999999999986421111123488999887554
|
| >4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.053 Score=43.07 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=50.5
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...+++.+..+||+.+++ +...+.++++.|...|+|++....+|+-.-.+.+|+.|..+..
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~---~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCc---CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHH
Confidence 34455666544457888999999999 5799999999999999999875322111124889999886653
|
| >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.031 Score=44.23 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=50.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....++-.-.+.+|+.|..+..
T Consensus 49 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 49 QYLVMLVLWET-DERSVSEIGERLYL---DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHhC-CCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 56677777664 79999999999999 5799999999999999999864211111124889999886654
|
| >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.029 Score=44.16 Aligned_cols=69 Identities=10% Similarity=0.114 Sum_probs=44.4
Q ss_pred HhCcchhhhhCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHG-RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~-~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...+ ++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 112 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGR---RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVE 112 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHH
Confidence 455667776532 69999999999999 5689999999999999999875211111124788998886553
|
| >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.024 Score=44.36 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=51.4
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.|.+|+.+..+..
T Consensus 35 ~~~iL~~l~~~-~~~~~~~la~~l~~---s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (145)
T 2a61_A 35 QFDILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 102 (145)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHH
Confidence 56677777653 79999999999999 5689999999999999999864211110124889999886553
|
| >1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.043 Score=42.94 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=52.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.+.+|+.|..+..
T Consensus 42 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 42 QYLALLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 56667777653 68999999999999 5799999999999999999865322121234889999886654
|
| >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.026 Score=41.65 Aligned_cols=48 Identities=13% Similarity=0.280 Sum_probs=40.5
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.++.|+..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+..
T Consensus 21 ~~~~il~~l~~~-~~~s~~ela~~l~i---s~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 21 SDVRIYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 355666777543 78999999999999 5799999999999999999865
|
| >1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.048 Score=43.28 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=50.5
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcC
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKD 112 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~ 112 (360)
.+|++...+... . +++.|.++||+.+++ ++..+.++|..|...|+++... | .|.|.++.....+
T Consensus 15 yAl~~L~~La~~---~--~~~~~~~~iA~~~~i---~~~~l~kil~~L~~~Glv~s~r----G-~GGy~L~~~p~~I--- 78 (149)
T 1ylf_A 15 IAVHILSILKNN---P--SSLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNR----G-PGGAGLLKDLHEI--- 78 (149)
T ss_dssp HHHHHHHHHHHS---C--GGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CCEEESSCGGGC---
T ss_pred HHHHHHHHHHhC---C--CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEcc----C-CCceEeCCChhhC---
Confidence 455555555432 2 268999999999999 5699999999999999998765 2 5778887654332
Q ss_pred CCCChhhhhhh
Q 018116 113 KSYCLSPLVSG 123 (360)
Q Consensus 113 ~~~~~~~~~~~ 123 (360)
++.+++..
T Consensus 79 ---tl~dVi~a 86 (149)
T 1ylf_A 79 ---TLLDVYHA 86 (149)
T ss_dssp ---BHHHHHHH
T ss_pred ---cHHHHHHH
Confidence 45555544
|
| >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.091 Score=42.32 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=46.6
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
.+|++...+... . +.+.|.++||+.+++ ++..+.++|..|...|+++-.. |..|.|++.....
T Consensus 13 yAlr~l~~La~~---~--~~~~s~~~IA~~~~i---s~~~l~kil~~L~~aGlv~s~r----G~~GGy~Lar~p~ 75 (162)
T 3k69_A 13 VAVHSILYLDAH---R--DSKVASRELAQSLHL---NPVMIRNILSVLHKHGYLTGTV----GKNGGYQLDLALA 75 (162)
T ss_dssp HHHHHHHHHHTT---T--TSCBCHHHHHHHHTS---CGGGTHHHHHHHHHTTSSEEEC----STTCEEECCSCGG
T ss_pred HHHHHHHHHHhC---C--CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec----CCCCCeEecCChh
Confidence 455555444332 1 368999999999999 4699999999999999997764 2246799876543
|
| >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.049 Score=43.78 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
++.|.++||+.+++ ++..++++|..|...|+|.... |.+|.|.++..
T Consensus 43 ~~~s~~eIA~~~~i---~~~~l~kil~~L~~aGlv~s~r----G~~GGy~Lar~ 89 (159)
T 3lwf_A 43 GPISLRSIAQDKNL---SEHYLEQLIGPLRNAGIVKSIR----GAHGGYVLNGD 89 (159)
T ss_dssp CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC----STTCEEEECSC
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCeEEEec----CCCCceEecCC
Confidence 68999999999999 5699999999999999998765 22467888654
|
| >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.03 Score=44.57 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=46.0
Q ss_pred hhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 46 IIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 46 ~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
.|.. +++.|..+||+.+++ +...+.+.++.|...|+|++.. +..+.+|+.+..+.
T Consensus 48 ~l~~-~~~~~~~~la~~l~v---s~~tvs~~l~~Le~~Glv~r~~------~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 48 LIRE-VGEARQVDMAARLGV---SQPTVAKMLKRLATMGLIEMIP------WRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHH-HSCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEET------TTEEEECHHHHHHH
T ss_pred HHHh-CCCcCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEec------CCceEEChhHHHHH
Confidence 4443 268999999999999 5789999999999999999875 46799999887554
|
| >2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.03 Score=42.40 Aligned_cols=53 Identities=21% Similarity=0.386 Sum_probs=44.6
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.+|..-.++.|+..|.. ++.|+.+||+.+++ +...+.+.|+.|...|++....
T Consensus 27 ~~l~~~~~~~il~~L~~--~~~s~~ela~~l~i---s~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 27 QALATPSRLMILTQLRN--GPLPVTDLAEAIGM---EQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp HHHCCHHHHHHHHHHHH--CCCCHHHHHHHHSS---CHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHhCCHHHHHHHHHHHH--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 34444557888888876 68999999999999 5799999999999999998765
|
| >2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A | Back alignment and structure |
|---|
Probab=93.89 E-value=0.047 Score=39.57 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=41.1
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 53 PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 53 ~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.|..+||+.+++ +...+.++++.|...|++....+ +-...|++|+.|..+..
T Consensus 30 ~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~~~~d---~R~~~v~LT~~G~~~~~ 82 (95)
T 2qvo_A 30 DVYIQYIASKVNS---PHSYVWLIIKKFEEAKMVECELE---GRTKIIRLTDKGQKIAQ 82 (95)
T ss_dssp CEEHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHHHHHH
T ss_pred CcCHHHHHHHHCc---CHHHHHHHHHHHHHCcCccCCCC---CCeEEEEEChhHHHHHH
Confidence 3899999999999 56999999999999999943321 00124999999886553
|
| >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D | Back alignment and structure |
|---|
Probab=93.85 E-value=0.03 Score=43.01 Aligned_cols=69 Identities=14% Similarity=0.256 Sum_probs=51.1
Q ss_pred HhCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... +++.|..+||+.+++ +...+.++++.|...|++.+.....|+-.-.+.+|+.|..+..
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~ 108 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIE 108 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 45566666552 168999999999999 5689999999999999999864222121234889999886553
|
| >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.023 Score=44.18 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=51.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.+.+|+.+..+..
T Consensus 38 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (142)
T 2fbi_A 38 QWRVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 105 (142)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHH
Confidence 56677777653 68999999999999 5689999999999999998864211110123889998886553
|
| >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.098 Score=43.13 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=53.5
Q ss_pred HHHhCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 38 AVELGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 38 a~~l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
..++.++..|... +++.|..+||+.+++ +...+.++++.|...|+|++.....++-.-.+.+|+.|..+..
T Consensus 41 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 41 SRQYMTILSILHLPEEETTLNNIARKMGT---SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 3456777777642 268999999999999 5689999999999999999865322121234899999986554
|
| >2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.083 Score=38.38 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.+..+||+.+++ +...+.|.|..|...|+++.... +++ .+..++|+.|..+.
T Consensus 35 ~~~s~~eLa~~l~l---~~stLsR~l~rLe~~GLV~r~~~-~D~-R~~v~LT~~G~~~l 88 (96)
T 2obp_A 35 TPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSVE-ADG-RGHASLTQEGAALA 88 (96)
T ss_dssp CCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC-TTS-CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC---chhhHHHHHHHHHHCCCEEeecC-CCC-ceeEEECHHHHHHH
Confidence 68899999999999 67999999999999999998553 333 34578999887544
|
| >1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.061 Score=42.43 Aligned_cols=57 Identities=11% Similarity=0.133 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcCCCCChhhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSG 123 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~ 123 (360)
++ |.++||+..++ ++..+.++|..|...|+|.... | .|.|+++.....+ ++.+++..
T Consensus 23 ~~-s~~~IA~~~~i---~~~~l~kIl~~L~~aGlv~s~r----G-~GGy~Lar~p~~I------tl~dVi~a 79 (145)
T 1xd7_A 23 KT-SSEIIADSVNT---NPVVVRRMISLLKKADILTSRA----G-VPGASLKKDPADI------SLLEVYRA 79 (145)
T ss_dssp CC-CHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCS----S-SSSCEESSCGGGC------BHHHHHHH
T ss_pred CC-CHHHHHHHHCc---CHHHHHHHHHHHHHCCceEeec----C-CCCceecCCHHHC------CHHHHHHH
Confidence 35 99999999999 4699999999999999998875 3 5778887654433 45555544
|
| >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.025 Score=41.52 Aligned_cols=66 Identities=12% Similarity=0.274 Sum_probs=47.7
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
.+|.--.++.|+..|... ++.++.|||+.+|+ ++..+.+.|+.|... ++..... |....|++++..
T Consensus 22 ~aL~~~~Rl~IL~~l~~~-~~~~~~ela~~l~i---s~stvs~hL~~L~~~-lv~~~~~---gr~~~y~l~~~~ 87 (99)
T 2zkz_A 22 KTMAHPMRLKIVNELYKH-KALNVTQIIQILKL---PQSTVSQHLCKMRGK-VLKRNRQ---GLEIYYSINNPK 87 (99)
T ss_dssp HHHCSHHHHHHHHHHHHH-SCEEHHHHHHHHTC---CHHHHHHHHHHHBTT-TBEEEEE---TTEEEEECCCHH
T ss_pred HHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHH-hhhheEe---CcEEEEEEChHH
Confidence 344444566777444332 79999999999999 579999999999999 9986652 113358887754
|
| >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.06 Score=45.55 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+++.+..+||+.+++ +...+.+.++.|...|++++.. ...+.+|+.|..+..
T Consensus 18 ~~~~~~~~lA~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~i~LT~~G~~~~~ 69 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV---SPPAVTEMMKKLLAEELLIKDK------KAGYLLTDLGLKLVS 69 (214)
T ss_dssp CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHHH
T ss_pred CCCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEEec------CCCeEECHHHHHHHH
Confidence 379999999999999 5689999999999999999986 478999999986653
|
| >1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.061 Score=38.92 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=49.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHH-HcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVS-ALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~-~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.|+-.|... ++.|..+||+ ..++ +...+.|-++.|...|+++..+ ++ +.+|+.++.+..
T Consensus 18 QfsiL~~L~~~-~~~t~~~Lae~~l~~---drstvsrnl~~L~r~GlVe~~~------~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKK-DFITAAEVREVHPDL---GNAVVNSNIGVLIKKGLVEKSG------DG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHS-TTBCHHHHHHTCTTS---CHHHHHHHHHHHHTTTSEEEET------TE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHhcc---cHHHHHHHHHHHHHCCCeecCC------CC-eeeCHhHHHHHH
Confidence 34556667664 6999999999 9999 6789999999999999999433 34 999999986654
|
| >3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.032 Score=42.77 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=40.4
Q ss_pred HhCcchhhhhCCCC-CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRP-ITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~-~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|...+++ .|+.|||+.+++ +...+.|.|+.|...|++.+..
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~---s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKL---DVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence 56677777654456 899999999999 5799999999999999998864
|
| >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.032 Score=45.69 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=49.9
Q ss_pred HhCcchhhhhCCCC--CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRP--ITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~--~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...+++ .|..+||+.+++ +...+.++++.|...|+|++.....++-.-.+.+|+.|..+..
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 141 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVT 141 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 56677778654332 999999999999 5689999999999999999864211111124889998886553
|
| >3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A | Back alignment and structure |
|---|
Probab=93.53 E-value=0.053 Score=42.71 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
++.|.++||+.+++ ++..+.++|..|...|+|.... |.+|.|+++...
T Consensus 27 ~~~s~~~IA~~~~i---~~~~l~kil~~L~~aGlv~s~r----G~~GGy~Lar~p 74 (143)
T 3t8r_A 27 GCISLKSIAEENNL---SDLYLEQLVGPLRNAGLIRSVR----GAKGGYQLRVPA 74 (143)
T ss_dssp CCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECS----SSSSEEEESSCG
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCEEEecC----CCCCCeeecCCc
Confidence 58999999999999 5699999999999999998654 224679886543
|
| >3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.11 Score=41.83 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=49.1
Q ss_pred HhCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... +++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 48 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 48 QYNTLRLLRSVHPEGMATLQIADRLIS---RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLK 117 (168)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHH
Confidence 56677777653 259999999999999 5689999999999999999875211010114889998886553
|
| >2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.058 Score=36.90 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=46.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
+-.|++.|..++.|++..+||+.+|+ +.--+...|..|-..|.+.... .-.|.++
T Consensus 21 eekVLe~LkeaG~PlkageIae~~Gv---dKKeVdKaik~LKkEgkI~SPk------RCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQA---PKRELNQVLYRMKKELKVSLTS------PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE------TTEEEES
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCccCCC------CceeeCC
Confidence 45677788777789999999999999 6788999999999999998886 4567765
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=92.63 E-value=0.56 Score=42.61 Aligned_cols=125 Identities=11% Similarity=0.099 Sum_probs=73.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-CCCeEEEeCCCCCC----CC--CccEEEeccccccC
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMPQ-TENLKYIAGDMFQY----IP--PADAYFFKLVFHAF 266 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~----~p--~~D~i~~~~~lh~~ 266 (360)
..+++|+-||.|.++..+.++.-.. .+.++|. +.+++..+. .+...++.+|+.+- ++ .+|+++..--...+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 3589999999999999999883222 4788898 777765543 34456788888662 23 58999986654444
Q ss_pred Chh--------HHHHHHHHHHHhccCCCCC--cEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHH
Q 018116 267 GDE--------DCLKILKKCREAIAGNGER--GKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLF 336 (360)
Q Consensus 267 ~~~--------~~~~~L~~~~~~L~p~~~g--G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll 336 (360)
+.. ..-.++.++.++++.. . -+++++|.+..-. .+ .+.+.+.+.|
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~--~~~P~~~~~ENV~~l~---------------------~~--~~~~~i~~~l 136 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRL--QKLPKYILLENVKGFE---------------------VS--STRDLLIQTI 136 (343)
T ss_dssp --------------CHHHHHHHHGGGC--SSCCSEEEEEEETTGG---------------------GS--HHHHHHHHHH
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHh--cCCCCEEEEeCCcccc---------------------CH--HHHHHHHHHH
Confidence 321 1112344333333321 1 2567777664210 01 1456788888
Q ss_pred HHCCCceeE
Q 018116 337 LDAGFTHYK 345 (360)
Q Consensus 337 ~~aGf~~~~ 345 (360)
++.||.+..
T Consensus 137 ~~~GY~v~~ 145 (343)
T 1g55_A 137 ENCGFQYQE 145 (343)
T ss_dssp HHTTEEEEE
T ss_pred HHCCCeeEE
Confidence 899987543
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=92.48 E-value=0.026 Score=48.36 Aligned_cols=67 Identities=12% Similarity=0.241 Sum_probs=51.9
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceec-cccCCCCc-----ccceecchhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSK-TKVGGEKE-----EEAYGLTAIS 106 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~-~~~~~~~~-----~~~y~~t~~~ 106 (360)
.+|.--.++.|+..|.. +|.|+.|||+.+|+ +...+.+.|+.|...|++.. ... |. ...|++++.+
T Consensus 7 kaL~~~~R~~IL~~L~~--g~~s~~ELa~~lgl---S~stVs~hL~~Le~aGLV~~~~~~---gr~~GRp~~~Y~Lt~~~ 78 (232)
T 2qlz_A 7 YILGNKVRRDLLSHLTC--MECYFSLLSSKVSV---SSTAVAKHLKIMEREGVLQSYEKE---ERFIGPTKKYYKISIAK 78 (232)
T ss_dssp HHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCC---CHHHHHHHHHHHHHTTSEEEEEEC---C-----CEEEEEECCCE
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeeec---CCCCCCccEEEEEccch
Confidence 45555567778888875 79999999999999 56899999999999999998 331 11 1248888866
Q ss_pred h
Q 018116 107 A 107 (360)
Q Consensus 107 ~ 107 (360)
.
T Consensus 79 ~ 79 (232)
T 2qlz_A 79 S 79 (232)
T ss_dssp E
T ss_pred h
Confidence 5
|
| >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 | Back alignment and structure |
|---|
Probab=92.41 E-value=0.083 Score=44.25 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=51.7
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccC-CC-Ccccceecchhhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVG-GE-KEEEAYGLTAISA 107 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~~~y~~t~~~~ 107 (360)
.+|..-.++.|+..|.. +|.++.+||+.+|+ +...+.+.|+.|...|+|...... .. +..-.|++|+.+.
T Consensus 10 kaL~~~~rl~IL~~L~~--~~~s~~eLa~~l~i---s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 45555556777777765 79999999999999 578999999999999999886421 00 1123488877654
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.12 Score=40.72 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=39.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQ 249 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~ 249 (360)
..-|+|+|-|+|..=-++.+.+|+.++.++|..-.....-..+.=.++.||+.+
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~ 94 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRE 94 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHH
T ss_pred CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHH
Confidence 467999999999999999999999999999972111111113444577788766
|
| >3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.16 Score=32.34 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=41.0
Q ss_pred hhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 46 IIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 46 ~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
.|+....+.|+.|+|+..++ +....+.-|+.|.+.|-+.+.+ .+|++.|-
T Consensus 11 ll~s~~QGMTaGEVAA~f~w---~Le~ar~aLeqLf~~G~LRKRs-------SRYrlkph 60 (68)
T 3i71_A 11 LLTSVRQGMTAGEVAAHFGW---PLEKARNALEQLFSAGTLRKRS-------SRYRLKPH 60 (68)
T ss_dssp HHHHCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECC-
T ss_pred HHHHHhccccHHHHHHHhCC---cHHHHHHHHHHHHhcchhhhhc-------cccccCcc
Confidence 34333369999999999999 5788889999999999999985 89988663
|
| >4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.058 Score=44.39 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=51.9
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCceeccccC--CCCcccceecchhhhhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALK-IQPTKTSNLFRFMRLLVHMGLFSKTKVG--GEKEEEAYGLTAISALL 109 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~-~~p~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~~~y~~t~~~~~l 109 (360)
.+|.-=.++.|+..|.. ++.++.+||+.++ + +...+.+.|+.|...|+|+...+. ..+....|++++.+..+
T Consensus 18 ~~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~---~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~~ 92 (182)
T 4g6q_A 18 DLLHHPLRWRITQLLIG--RSLTTRELAELLPDV---ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGDA 92 (182)
T ss_dssp HHTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTB---CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTTS
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccccC
Confidence 44455567888888875 7999999999996 7 467899999999999999765421 00012348887765443
|
| >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=91.69 E-value=0.079 Score=44.52 Aligned_cols=68 Identities=21% Similarity=0.133 Sum_probs=50.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|+|.+.....|+-.-.+.+|+.|..+..
T Consensus 50 q~~iL~~L~~~-~~~t~~eLa~~l~i---~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (207)
T 2fxa_A 50 EHHILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 117 (207)
T ss_dssp HHHHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHH
Confidence 45567777653 69999999999999 5799999999999999999875211111125899999986553
|
| >3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.2 Score=39.54 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=49.8
Q ss_pred HHhCcchhhhhCC-CCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCceeccccCCC-Cccc----ceecchhhhhhh
Q 018116 39 VELGIADIIHSHG-RPITLSELVSALK-IQPTKTSNLFRFMRLLVHMGLFSKTKVGGE-KEEE----AYGLTAISALLI 110 (360)
Q Consensus 39 ~~l~lf~~L~~~~-~~~t~~ela~~~~-~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~-~~~~----~y~~t~~~~~l~ 110 (360)
.++.|++.|..+. +..|++||++.++ + +...+.+.|+.|+..|+|++...... ...+ .|++|+.+..+.
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l---S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDE---TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 4566666665422 4589999999998 8 67899999999999999986532100 0012 699999998544
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=91.39 E-value=1.1 Score=41.21 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=63.2
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCeEEEeCCCCCC----C-------CCccEEEeccc
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIK-CTVLDL-PHAVANMPQ-TENLKYIAGDMFQY----I-------PPADAYFFKLV 262 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~----~-------p~~D~i~~~~~ 262 (360)
-+++|+=||.|.++..+.++ +.+ +.++|. +.+++..+. .+...++.+|+.+- + +.+|+++..--
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 47999999999999999988 565 458898 777665443 34677888888651 1 36999998665
Q ss_pred cccCCh-------hHHHHHHHH---HHHhccCCCCCcEEEEEeeecC
Q 018116 263 FHAFGD-------EDCLKILKK---CREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 263 lh~~~~-------~~~~~~L~~---~~~~L~p~~~gG~lli~e~~~~ 299 (360)
...++. +..-.++.. +.+.++| +++++|.+..
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-----~~~v~ENV~g 122 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-----LFFLAENVPG 122 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC-----SEEEEEECTT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC-----CEEEEecchH
Confidence 444431 112233333 3344566 5788887654
|
| >4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.11 Score=40.88 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=48.5
Q ss_pred hCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 41 LGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 41 l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.++..|... +++.|..+||+.+++ +...+.++++.|...|+|++....+|+-.-...+|+.|..+..
T Consensus 38 ~~vL~~L~~~~~~~~t~~eLa~~l~~---~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 106 (147)
T 4b8x_A 38 YEALVLLTFSKSGELPMSKIGERLMV---HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVE 106 (147)
T ss_dssp HHHHHHHHTSGGGEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHH
Confidence 3445555321 268999999999999 5799999999999999999875322111123889999986653
|
| >1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A | Back alignment and structure |
|---|
Probab=91.05 E-value=0.067 Score=40.58 Aligned_cols=61 Identities=13% Similarity=0.271 Sum_probs=45.8
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcC----CCCCCcccHHHHHHHHHhCCceeccccCCCCcccc---eecchhhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALK----IQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEA---YGLTAISALLI 110 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~----~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~---y~~t~~~~~l~ 110 (360)
+.++..|... ++.|..+||+.++ + +...+.++|+.|...|++.+... +.+ +.+|+.+..+.
T Consensus 13 ~~vL~~l~~~-~~~t~~ela~~l~~~~~~---s~~tv~~~l~~L~~~Glv~r~~~-----~rr~~~~~lT~~g~~~~ 80 (123)
T 1okr_A 13 WEVMNIIWMK-KYASANNIIEEIQMQKDW---SPKTIRTLITRLYKKGFIDRKKD-----NKIFQYYSLVEESDIKY 80 (123)
T ss_dssp HHHHHHHHHH-SSEEHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHTSEEEEEE-----TTEEEEEESSCHHHHHH
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHhccCCC---cHhhHHHHHHHHHHCCCeEEEec-----CCeEEEEEecCHHHHHH
Confidence 3444555442 7999999999999 5 46889999999999999998762 122 46888877655
|
| >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.02 E-value=0.14 Score=39.46 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=42.6
Q ss_pred HHHHhCcchhhhhCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 37 GAVELGIADIIHSHGRPITLSELVSAL-----KIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 37 ~a~~l~lf~~L~~~~~~~t~~ela~~~-----~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+-.+..|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---s~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENI---GLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCEEEEE
Confidence 445677788887655799999999998 66 5688999999999999999875
|
| >1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 | Back alignment and structure |
|---|
Probab=90.88 E-value=0.087 Score=39.21 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=38.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
++.|+..+...+.+.|..+||+.+|+ +..-+++.|+.|...|+++..
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgv---s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 45566666432348999999999999 568899999999999999876
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.75 E-value=0.33 Score=42.22 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=33.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP 235 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 235 (360)
.++..|||..||+|.++.+..+. +.+++++|+ +..++.++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 56789999999999999988776 679999999 77776553
|
| >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=0.16 Score=40.00 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=40.7
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+..|+..|.. +++.|..|||+.+|+ ++..+.+.++.|...|++.+.
T Consensus 4 ~~~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQY-NAKYSLDEIAREIRI---PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTT-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEE
Confidence 35667888876 378999999999999 579999999999999999875
|
| >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A | Back alignment and structure |
|---|
Probab=90.55 E-value=0.21 Score=41.37 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=44.0
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.++....+..|+..|.. ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 15 k~l~d~~~~~IL~~L~~--~~~s~~eLA~~lgl---S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 33444567778888874 79999999999999 568999999999999999887
|
| >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* | Back alignment and structure |
|---|
Probab=90.52 E-value=0.26 Score=38.70 Aligned_cols=62 Identities=13% Similarity=0.266 Sum_probs=46.6
Q ss_pred HHHHhCcchhhhhCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 37 GAVELGIADIIHSHGRPITLSELVSAL-----KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 37 ~a~~l~lf~~L~~~~~~~t~~ela~~~-----~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
+-.+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|...|++.+.... ++..+|.+.
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~--~~~~~Y~~~ 87 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM---SVATVYNNLRVFRESGLVKELTYG--DASSRFDFV 87 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC---CHHHHHHHHHHHHHTTSEEEECCT--TSCCEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---ChhhHHHHHHHHHHCCCEEEEeeC--CCceEEECC
Confidence 344567888887655799999999998 55 568899999999999999987531 113457653
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=90.46 E-value=1.9 Score=38.71 Aligned_cols=120 Identities=21% Similarity=0.199 Sum_probs=73.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCeEEEeCCCCC----CCCCccEEEeccccccCC-
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIK-CTVLDL-PHAVANMPQ-TENLKYIAGDMFQ----YIPPADAYFFKLVFHAFG- 267 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~----~~p~~D~i~~~~~lh~~~- 267 (360)
..+++|+-||.|.++..+.++ +.+ +..+|. +.+++..+. .+... .+|+.+ ..+.+|+++..--...++
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 468999999999999999886 455 566888 766654432 11111 577765 245799998865444443
Q ss_pred --------hhH---HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHH
Q 018116 268 --------DED---CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLF 336 (360)
Q Consensus 268 --------~~~---~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll 336 (360)
|+. ...+++ +.+.++| +++++|.+..-... .+..+.+.+.+.|
T Consensus 87 ag~~~g~~d~r~~L~~~~~r-~i~~~~P-----~~~~~ENV~gl~~~--------------------~~~~~~~~i~~~l 140 (327)
T 2c7p_A 87 SGKQKGFEDSRGTLFFDIAR-IVREKKP-----KVVFMENVKNFASH--------------------DNGNTLEVVKNTM 140 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHH-HHHHHCC-----SEEEEEEEGGGGTG--------------------GGGHHHHHHHHHH
T ss_pred hcccCCCcchhhHHHHHHHH-HHHhccC-----cEEEEeCcHHHHhc--------------------cccHHHHHHHHHH
Confidence 111 122333 3344566 57788876432110 1122567788888
Q ss_pred HHCCCceeE
Q 018116 337 LDAGFTHYK 345 (360)
Q Consensus 337 ~~aGf~~~~ 345 (360)
++.||.+..
T Consensus 141 ~~~GY~v~~ 149 (327)
T 2c7p_A 141 NELDYSFHA 149 (327)
T ss_dssp HHTTBCCEE
T ss_pred HhCCCEEEE
Confidence 999987543
|
| >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=90.37 E-value=0.19 Score=39.42 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=40.3
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|++.|... ++.|..|||+.+|+ ++..+.+.++.|...|++.+..
T Consensus 7 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 53 (144)
T 2cfx_A 7 DLNIIEELKKD-SRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQYT 53 (144)
T ss_dssp HHHHHHHHHHC-SCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEe
Confidence 45677788763 79999999999999 5799999999999999998753
|
| >2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=90.28 E-value=0.63 Score=35.00 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=51.5
Q ss_pred HHHHHHhCcchhhhhCCCCCCHHHHHHHcC--------CCCCCc-ccHHHHHHHHHhCCceeccccCCCC-cccceecch
Q 018116 35 LKGAVELGIADIIHSHGRPITLSELVSALK--------IQPTKT-SNLFRFMRLLVHMGLFSKTKVGGEK-EEEAYGLTA 104 (360)
Q Consensus 35 L~~a~~l~lf~~L~~~~~~~t~~ela~~~~--------~~p~~~-~~l~~lL~~L~~~g~l~~~~~~~~~-~~~~y~~t~ 104 (360)
++...++-|+..|.. +|.+.-||++.+. + ++ ..+.+.|+.|...|+|+......++ ..-.|++|+
T Consensus 10 ~~~~~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~i---s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~ 84 (118)
T 2esh_A 10 RGWWLASTILLLVAE--KPSHGYELAERLAEFGIEIPGI---GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITP 84 (118)
T ss_dssp HHHHHHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTC---CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECH
T ss_pred ccchHHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCC---CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEECh
Confidence 344456666777765 7999999999883 4 67 8999999999999999876421011 123499999
Q ss_pred hhhhhh
Q 018116 105 ISALLI 110 (360)
Q Consensus 105 ~~~~l~ 110 (360)
.|..+.
T Consensus 85 ~G~~~l 90 (118)
T 2esh_A 85 QGKLYL 90 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998554
|
| >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A | Back alignment and structure |
|---|
Probab=90.25 E-value=0.19 Score=39.66 Aligned_cols=47 Identities=19% Similarity=0.161 Sum_probs=40.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|... ++.|..|||+.+|+ ++..+.+.++.|...|++.+..
T Consensus 9 ~~~iL~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 9 DRILVRELAAD-GRATLSELATRAGL---SVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEE
Confidence 45677777663 79999999999999 5789999999999999997653
|
| >1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B | Back alignment and structure |
|---|
Probab=89.91 E-value=0.12 Score=36.18 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=38.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCC-CCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQP-TKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p-~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|.. .++.|+.||++.++..+ -+..-+.++|+.|...|++.+..
T Consensus 11 e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 11 ELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 4556666654 37999999999997310 04588999999999999999876
|
| >2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=89.90 E-value=0.16 Score=32.43 Aligned_cols=47 Identities=15% Similarity=0.324 Sum_probs=41.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
+-.|++.|..++|-+.+..+|+.+|+ +..-+..+|+-|.+.|++.-+
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV---~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGV---EKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecc
Confidence 45678888888899999999999999 568899999999999998754
|
| >4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=89.84 E-value=0.52 Score=35.53 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=51.2
Q ss_pred HHHHHHHhCcchhhhhCCCCCCHHHHHHHc------CCCCCCcccHHHHHHHHHhCCceeccccC-CCC-cccceecchh
Q 018116 34 SLKGAVELGIADIIHSHGRPITLSELVSAL------KIQPTKTSNLFRFMRLLVHMGLFSKTKVG-GEK-EEEAYGLTAI 105 (360)
Q Consensus 34 ~L~~a~~l~lf~~L~~~~~~~t~~ela~~~------~~~p~~~~~l~~lL~~L~~~g~l~~~~~~-~~~-~~~~y~~t~~ 105 (360)
.++-.+++=|+..|.. +|.+--||++.+ ++ ++..+...|+.|...|+|+..... +++ ..-.|++|+.
T Consensus 7 l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~ 81 (117)
T 4esf_A 7 MLKGSLEGCVLEIISR--RETYGYEITRHLNDLGFTEV---VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEA 81 (117)
T ss_dssp HHHHHHHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTC---CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHH
T ss_pred HHHChHHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHH
Confidence 4444555556666765 799999999887 56 578999999999999999876421 111 1234999999
Q ss_pred hhhhh
Q 018116 106 SALLI 110 (360)
Q Consensus 106 ~~~l~ 110 (360)
|+...
T Consensus 82 G~~~l 86 (117)
T 4esf_A 82 GRQEL 86 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98444
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=89.70 E-value=0.23 Score=42.98 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=51.9
Q ss_pred HhCcchhhhhCCC-CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGR-PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~-~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...++ +.|..|||+.+++ +...+.++++-|...|+|.+....+|+-.-...+|+.|..+..
T Consensus 160 q~~vL~~L~~~~~~~~t~~eLa~~l~i---~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~ 229 (250)
T 1p4x_A 160 EFTILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAE 229 (250)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHH
Confidence 4567777765432 5999999999999 5799999999999999999976322111123888999886653
|
| >4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A* | Back alignment and structure |
|---|
Probab=89.60 E-value=0.25 Score=38.87 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=41.4
Q ss_pred hCcchhhhhC----CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 41 LGIADIIHSH----GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 41 l~lf~~L~~~----~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+.++..|... ++++|..|||+.+++ +...+.++++.|...|+|....+ +|+=.-...+|+.|..+.
T Consensus 36 ~~vL~~l~~~~~~~~~~~t~~eLa~~l~~---~~~tvsr~v~~Le~~glVr~~~~-~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 36 FSTLAVISLSEGSAGIDLTMSELAARIGV---ERTTLTRNLEVMRRDGLVRVMAG-ADARCKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHHHHC---------CHHHHHHHHTC---CHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCC-CCCCeeEEEECHHHHHHH
Confidence 4445555432 146899999999999 57999999999999999955432 111112388888888554
|
| >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A | Back alignment and structure |
|---|
Probab=89.54 E-value=0.23 Score=39.75 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=40.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|... ++.|..|||+.+|+ ++..+.+.++.|...|++.+..
T Consensus 12 ~~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 58 (162)
T 2p5v_A 12 DIKILQVLQEN-GRLTNVELSERVAL---SPSPCLRRLKQLEDAGIVRQYA 58 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeeec
Confidence 45677777663 78999999999999 5789999999999999998753
|
| >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=89.24 E-value=0.22 Score=39.41 Aligned_cols=47 Identities=11% Similarity=0.286 Sum_probs=40.3
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|... ++.|..|||+++|+ ++..+.+.++.|...|++....
T Consensus 10 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 10 DRGILEALMGN-ARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp HHHHHHHHHHC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHcCCcceEE
Confidence 45677777763 79999999999999 5789999999999999998753
|
| >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=89.16 E-value=0.15 Score=37.30 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++.|..|||+.+|+ +...+.+.|+.|...|++.+..
T Consensus 35 ~~~t~~ela~~l~i---s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 78999999999999 5689999999999999999875
|
| >2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=89.10 E-value=0.11 Score=38.07 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=39.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCC-CCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQP-TKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p-~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++.|+..|-.. ++.|+.||++.++..+ -+..-+.++|+.|...|+|++..
T Consensus 37 e~~VL~~L~~~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 37 ELIVMRVIWSL-GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CSHHHHHHHHH-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 45667777653 7999999999998521 13578999999999999999986
|
| >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=88.91 E-value=0.26 Score=39.47 Aligned_cols=47 Identities=13% Similarity=0.334 Sum_probs=41.2
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+..|++.|.. +++.|..+||+++|+ ++..+.+-++.|...|++...
T Consensus 4 ~d~~il~~L~~-~~~~s~~~la~~lg~---s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQE-DSTLAVADLAKKVGL---STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTT-CSCSCHHHHHHHHTC---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeec
Confidence 35678888876 489999999999999 578999999999999999865
|
| >2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=88.87 E-value=0.22 Score=39.37 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=40.1
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|... ++.|..|||+.+|+ ++..+.+.++.|...|++....
T Consensus 9 ~~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 55 (151)
T 2cyy_A 9 DKKIIKILQND-GKAPLREISKITGL---AESTIHERIRKLRESGVIKKFT 55 (151)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 45677777763 79999999999999 5789999999999999998753
|
| >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 | Back alignment and structure |
|---|
Probab=88.59 E-value=0.21 Score=38.91 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=38.0
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
..++..|....++.|..|||+.+|+ +...+.++++.|...|++++..
T Consensus 29 ~~il~~L~~~~~~~t~~ela~~l~~---~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 29 GAVYAILYLSDKPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 3445555322379999999999999 5689999999999999999863
|
| >2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=88.55 E-value=0.27 Score=38.79 Aligned_cols=47 Identities=19% Similarity=0.363 Sum_probs=40.3
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|... ++.|..|||+.+|+ ++..+.+.++.|...|++.+..
T Consensus 11 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 57 (151)
T 2dbb_A 11 DMQLVKILSEN-SRLTYRELADILNT---TRQRIARRIDKLKKLGIIRKFT 57 (151)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEE
Confidence 45677778763 79999999999999 5789999999999999998753
|
| >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=88.50 E-value=0.25 Score=38.34 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=39.4
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|...|.. +++.|..|||+.+|+ ++..+.+.++.|...|++.+..
T Consensus 6 ~~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 6 DKIILEILEK-DARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeccc
Confidence 4456677765 378999999999999 5789999999999999998763
|
| >1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 | Back alignment and structure |
|---|
Probab=88.47 E-value=0.45 Score=39.07 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=45.7
Q ss_pred HHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCc-eeccccCCCCcccceecchh
Q 018116 38 AVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGL-FSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 38 a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~~~y~~t~~ 105 (360)
-....|.+.|...+++.|..|||+.+|+ +.+-+.+-++.|...|+ +... .++|.+.+.
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~v---S~~Ti~rdi~~L~~~G~~I~~~-------~~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVAT-------PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEE-------TTEEECCTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE-------CCEEEECCc
Confidence 3456678888753357999999999999 67999999999999999 7664 356777653
|
| >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 | Back alignment and structure |
|---|
Probab=88.46 E-value=0.28 Score=41.74 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.|..++|+++++ ++..+.+.++.|...|+|.+... +-...+.+|+.|..+..
T Consensus 26 ~~~s~s~aA~~L~i---sq~avSr~I~~LE~~~L~~R~~~---~R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVT---KRGQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEEc---CCeEEEEECHHHHHHHH
Confidence 57899999999999 67999999999999999999831 00267999999986654
|
| >2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=88.35 E-value=0.31 Score=39.48 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=40.2
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+..|+..|... ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 18 ~d~~IL~~L~~~-~~~s~~eLA~~lgl---S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKD-ARLTISELSEQLKK---PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEee
Confidence 345677888763 78999999999999 578999999999999999865
|
| >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 | Back alignment and structure |
|---|
Probab=88.16 E-value=0.47 Score=34.59 Aligned_cols=52 Identities=13% Similarity=0.246 Sum_probs=39.8
Q ss_pred HHHHHHhCcch-hhhhCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 35 LKGAVELGIAD-IIHSHGRPI-TLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 35 L~~a~~l~lf~-~L~~~~~~~-t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+.-.++..|.+ .+.. +..+ |..+||+.+|+ +..-+++-|+.|...|++....
T Consensus 16 l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 16 VATHFRTLIKSGELAP-GDTLPSVADIRAQFGV---AAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSS---CTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 34444555665 3443 3455 99999999999 5688999999999999998875
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=88.06 E-value=0.71 Score=39.98 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=62.1
Q ss_pred CCEEEEeCCCCchHHHHHHHH-------CCCCeEEEeec-hHHHh----------------------------------c
Q 018116 196 LGSIVDVGGGNGGFSKIISEA-------FPGIKCTVLDL-PHAVA----------------------------------N 233 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~----------------------------------~ 233 (360)
...|+|+|+-.|..+..+++. .++-++.++|. ..+-+ .
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 569999999999988876652 35678999983 11110 0
Q ss_pred CC---C-CCCeEEEeCCCCCC-------CC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 234 MP---Q-TENLKYIAGDMFQY-------IP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 234 a~---~-~~ri~~~~~D~~~~-------~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
.+ . .++|+++.|++.+. .| .+|++++=.-. + +.....+..+...|+| |.++++|-.
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y--~~t~~~le~~~p~l~~----GGvIv~DD~ 218 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--Y--EPTKAVLEAIRPYLTK----GSIVAFDEL 218 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--H--HHHHHHHHHHGGGEEE----EEEEEESST
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--c--chHHHHHHHHHHHhCC----CcEEEEcCC
Confidence 01 1 37899999998762 23 38888764321 1 2245679999999999 555555543
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=88.04 E-value=1.5 Score=39.17 Aligned_cols=84 Identities=15% Similarity=0.096 Sum_probs=52.7
Q ss_pred CCEEEEeCCCC--chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCCccEEEeccccccCChhHH
Q 018116 196 LGSIVDVGGGN--GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIPPADAYFFKLVFHAFGDEDC 271 (360)
Q Consensus 196 ~~~iLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p~~D~i~~~~~lh~~~~~~~ 271 (360)
..+|.=||+|. +.++..+.+.....+++++|. ++.++.+.+..-+.-...|..+ ...++|+|++. .+....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVila-----vp~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEEC-----SCGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEe-----CCHHHH
Confidence 36899999874 234444555422238999999 7666655432222222334433 34579999875 355567
Q ss_pred HHHHHHHHHhccC
Q 018116 272 LKILKKCREAIAG 284 (360)
Q Consensus 272 ~~~L~~~~~~L~p 284 (360)
..+++++...++|
T Consensus 108 ~~vl~~l~~~l~~ 120 (314)
T 3ggo_A 108 REIAKKLSYILSE 120 (314)
T ss_dssp HHHHHHHHHHSCT
T ss_pred HHHHHHHhhccCC
Confidence 7889999999998
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=88.03 E-value=1 Score=39.55 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCC-----CC--CccEEEecccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQY-----IP--PADAYFFKLVF 263 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~~-----~p--~~D~i~~~~~l 263 (360)
...+||+=+|||.+++.+++ +.-+++.+|. +..++..++ .++++++..|.+.. .| .||+|++==-.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 45689999999999999988 3578999999 877765553 57899999997651 12 59999873222
Q ss_pred ccCChhHHHHHHHHHHHhc--cCCCCCcEEEEEeeecCC
Q 018116 264 HAFGDEDCLKILKKCREAI--AGNGERGKVLIMDIVINE 300 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L--~p~~~gG~lli~e~~~~~ 300 (360)
. . .++..++++.+.+.. .| +|.++|.=++...
T Consensus 170 e-~-k~~~~~vl~~L~~~~~r~~---~Gi~v~WYPi~~~ 203 (283)
T 2oo3_A 170 E-R-KEEYKEIPYAIKNAYSKFS---TGLYCVWYPVVNK 203 (283)
T ss_dssp C-S-TTHHHHHHHHHHHHHHHCT---TSEEEEEEEESSH
T ss_pred C-C-CcHHHHHHHHHHHhCccCC---CeEEEEEEeccch
Confidence 2 1 123455566555533 45 7888887776554
|
| >2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=87.77 E-value=0.43 Score=37.72 Aligned_cols=51 Identities=12% Similarity=0.295 Sum_probs=43.0
Q ss_pred HHHHhCcchhhhhCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 37 GAVELGIADIIHSHGRPITLSELVSAL-----KIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 37 ~a~~l~lf~~L~~~~~~~t~~ela~~~-----~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+-.+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT---SISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCcEEEEE
Confidence 556677888887655799999999988 55 5688999999999999999865
|
| >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A | Back alignment and structure |
|---|
Probab=87.48 E-value=0.27 Score=41.88 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=42.0
Q ss_pred CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 54 ITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 54 ~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.+..+||+.+++ +...+.+.|+.|...|++++.. +..+.+|+.|..+..
T Consensus 25 ~~~~~La~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 25 PLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG------DRHLELTEKGRALAI 73 (230)
T ss_dssp CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECHHHHHHHH
T ss_pred CcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC------CccEEECHHHHHHHH
Confidence 345999999999 5688999999999999999986 467999999986543
|
| >3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.09 E-value=0.36 Score=40.01 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+.|.|..|||+.+|++ ...+.+.|+.|...|++.+..
T Consensus 22 g~~~s~~eia~~lgl~---~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 22 GYPPSVREIARRFRIT---PRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp SSCCCHHHHHHHHTSC---HHHHHHHHHHHHHTTSEECC-
T ss_pred CCCCCHHHHHHHcCCC---cHHHHHHHHHHHHCCCEEecC
Confidence 3589999999999995 457999999999999999874
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=86.80 E-value=2.1 Score=38.51 Aligned_cols=125 Identities=12% Similarity=0.111 Sum_probs=76.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCe-E-EEeec-hHHHhcCCC--CCCeEEEeCCCCC-C---CC--CccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIK-C-TVLDL-PHAVANMPQ--TENLKYIAGDMFQ-Y---IP--PADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~-~-~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~---~p--~~D~i~~~~~l 263 (360)
...+++|+-||.|.++..+.++.-..+ + .++|+ +.+.+..+. ... +..+|+.+ . ++ .+|+++...--
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~--~~~~DI~~~~~~~i~~~~~Dil~ggpPC 86 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE--VQVKNLDSISIKQIESLNCNTWFMSPPC 86 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC--CBCCCTTTCCHHHHHHTCCCEEEECCCC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC--cccCChhhcCHHHhccCCCCEEEecCCc
Confidence 356899999999999999988732234 4 58998 766654432 121 56778866 1 23 58999986655
Q ss_pred ccC-----------ChhHHHHHHHHHHH-hccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHH
Q 018116 264 HAF-----------GDEDCLKILKKCRE-AIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEE 331 (360)
Q Consensus 264 h~~-----------~~~~~~~~L~~~~~-~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e 331 (360)
..+ .|+ .-.++..+.+ +++.....-+++++|.+..-. .+ .+.+.
T Consensus 87 Q~fs~S~ag~~~~~~d~-r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~---------------------~~--~~~~~ 142 (327)
T 3qv2_A 87 QPYNNSIMSKHKDINDP-RAKSVLHLYRDILPYLINKPKHIFIENVPLFK---------------------ES--LVFKE 142 (327)
T ss_dssp TTCSHHHHTTTCTTTCG-GGHHHHHHHHTTGGGCSSCCSEEEEEECGGGG---------------------GS--HHHHH
T ss_pred cCcccccCCCCCCCccc-cchhHHHHHHHHHHHhccCCCEEEEEchhhhc---------------------Ch--HHHHH
Confidence 545 222 2245555555 443200013678888664210 01 24577
Q ss_pred HHHHHHHCCCceeE
Q 018116 332 WKTLFLDAGFTHYK 345 (360)
Q Consensus 332 ~~~ll~~aGf~~~~ 345 (360)
+.+.|++.||.+..
T Consensus 143 i~~~l~~~GY~v~~ 156 (327)
T 3qv2_A 143 IYNILIKNQYYIKD 156 (327)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHhCCCEEEE
Confidence 88889999997543
|
| >1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42 | Back alignment and structure |
|---|
Probab=86.76 E-value=0.35 Score=37.49 Aligned_cols=60 Identities=15% Similarity=0.328 Sum_probs=44.9
Q ss_pred HHHhCcchhhhhCC-CCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceec
Q 018116 38 AVELGIADIIHSHG-RPITLSELVSAL-----KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGL 102 (360)
Q Consensus 38 a~~l~lf~~L~~~~-~~~t~~ela~~~-----~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~ 102 (360)
-.+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|...|++.+.... ++..+|.+
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~--~~~~~Y~~ 83 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV---GLATVYRVLTQFEAAGLVVRHNFD--GGHAVFEL 83 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEECSS--SSSCEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC---CHHHHHHHHHHHHHCCcEEEEEeC--CCceEEEe
Confidence 34566888887654 689999999988 55 568899999999999999987521 11345765
|
| >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=86.48 E-value=0.63 Score=35.63 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=32.3
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 53 PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 53 ~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
..|..+||+.+++ ++..+.+.++.|...|++.+..
T Consensus 51 ~ps~~~LA~~l~~---s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 51 FPTPAELAERMTV---SAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SCCHHHHHHTSSS---CHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 4799999999999 6799999999999999999864
|
| >3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=86.35 E-value=0.44 Score=37.09 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=46.4
Q ss_pred HHHHhCcchhhhhCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 37 GAVELGIADIIHSHGRPITLSELVSAL-----KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 37 ~a~~l~lf~~L~~~~~~~t~~ela~~~-----~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
+..+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+.... ++..+|.+.
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~--~g~~~Y~~~ 79 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAV---GLTTVYRTLQSLADAGEVDVLRTA--EGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSSEEEECT--TSCEEEECC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCCEEEEEcC--CCceEEEEC
Confidence 445677888887655799999999987 34 567899999999999999987521 113457664
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=86.20 E-value=3.7 Score=30.98 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=50.3
Q ss_pred CEEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCccEEEeccccccC
Q 018116 197 GSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY-------IPPADAYFFKLVFHAF 266 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~-------~p~~D~i~~~~~lh~~ 266 (360)
.+|+=+|+ |.++..+++.+ .+.+++++|. ++.++.+.....+.++.+|..++ ..++|+|+..-
T Consensus 5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~----- 77 (140)
T 1lss_A 5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT----- 77 (140)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC-----
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee-----
Confidence 47888887 55554444433 3578999998 66555443222466777776541 34689987752
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
++++....+..+.+.+++ +++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~----~~ii~ 100 (140)
T 1lss_A 78 GKEEVNLMSSLLAKSYGI----NKTIA 100 (140)
T ss_dssp SCHHHHHHHHHHHHHTTC----CCEEE
T ss_pred CCchHHHHHHHHHHHcCC----CEEEE
Confidence 333333345555566776 46554
|
| >1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=86.16 E-value=0.79 Score=31.31 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=40.0
Q ss_pred chhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 44 ADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 44 f~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
++.|.. ++..|+.+||.++|+ +..-+.|.|--|...|.|..... +.-.|..+
T Consensus 21 i~~L~~-~~~~Ta~~IAkkLg~---sK~~vNr~LY~L~kkG~V~~~~~----~PP~W~~~ 72 (75)
T 1sfu_A 21 VLSLNT-NDYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVPS----NPPKWFKN 72 (75)
T ss_dssp HHTSCT-TCEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEECC----SSCEEEEC
T ss_pred HHhCCC-CcchHHHHHHHHHCC---CHHHHHHHHHHHHHCCCEecCCC----CCCCccCC
Confidence 346665 245999999999999 56889999999999999988752 24455544
|
| >3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=86.10 E-value=0.85 Score=34.26 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=51.7
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHc------CCCCCCcccHHHHHHHHHhCCceecccc-CCCC-cccceecch
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSAL------KIQPTKTSNLFRFMRLLVHMGLFSKTKV-GGEK-EEEAYGLTA 104 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~------~~~p~~~~~l~~lL~~L~~~g~l~~~~~-~~~~-~~~~y~~t~ 104 (360)
..++-.+++=|+..|.. +|.+--||++.+ ++ ++..+...|+.|...|+++.... +++| ..-.|++|+
T Consensus 8 ~l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~ 82 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR--KETYGYEITKILNDQGFTEI---VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTS 82 (116)
T ss_dssp HHHTTHHHHHHHHHHHH--SCBCHHHHHHHHHTTSCSSC---CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECH
T ss_pred HHHhhhHHHHHHHHHhc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECH
Confidence 34444555566667765 799999999987 45 57899999999999999987532 1111 122499999
Q ss_pred hhhhhh
Q 018116 105 ISALLI 110 (360)
Q Consensus 105 ~~~~l~ 110 (360)
.|+...
T Consensus 83 ~G~~~l 88 (116)
T 3hhh_A 83 SGEAEL 88 (116)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998444
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=85.97 E-value=1.1 Score=41.82 Aligned_cols=53 Identities=8% Similarity=0.017 Sum_probs=40.2
Q ss_pred CCCCEEEEeCCCCchHHHHHH-HHCCC-CeEEEeec-hHHHhcCCC---------C-CCeEEEeCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIIS-EAFPG-IKCTVLDL-PHAVANMPQ---------T-ENLKYIAGD 246 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a~~---------~-~ri~~~~~D 246 (360)
.+...++|||++.|.++..++ +..+. .+++.++. |...+..++ . ++++++..-
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~a 290 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCG 290 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSE
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeE
Confidence 577899999999999999988 56665 79999998 776654432 2 566666543
|
| >3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A* | Back alignment and structure |
|---|
Probab=85.91 E-value=1.3 Score=33.22 Aligned_cols=73 Identities=12% Similarity=0.222 Sum_probs=51.8
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHc--------CCCCCCcccHHHHHHHHHhCCceecccc-CCCC-cccceec
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSAL--------KIQPTKTSNLFRFMRLLVHMGLFSKTKV-GGEK-EEEAYGL 102 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~--------~~~p~~~~~l~~lL~~L~~~g~l~~~~~-~~~~-~~~~y~~ 102 (360)
..++-.+++=|+..|.. +|.+--+|.+.+ ++ ++..+...|+.|...|+++.... +.++ ..-.|++
T Consensus 7 ~~~~g~l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i---~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~L 81 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMEL---NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRL 81 (116)
T ss_dssp HHHHHHHHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCC---CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEE
T ss_pred HHHhchHHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEE
Confidence 44555566666777775 799999999877 45 67899999999999999987531 0111 1234999
Q ss_pred chhhhhhh
Q 018116 103 TAISALLI 110 (360)
Q Consensus 103 t~~~~~l~ 110 (360)
|+.|+...
T Consensus 82 T~~G~~~l 89 (116)
T 3f8b_A 82 TEIGHENM 89 (116)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99998544
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=85.67 E-value=0.83 Score=45.62 Aligned_cols=118 Identities=16% Similarity=0.165 Sum_probs=68.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHC-------CC-----CeEEEeec-h---HHHhcC-C----------------------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAF-------PG-----IKCTVLDL-P---HAVANM-P---------------------- 235 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~~~~a-~---------------------- 235 (360)
+..+|+|+|-|+|.......+.+ |. ++++.++. | ..+..+ .
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 45799999999999877766643 22 56788775 3 122110 0
Q ss_pred ------CCC--CeEEEeCCCCC---CC-----CCccEEEecccc-ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 236 ------QTE--NLKYIAGDMFQ---YI-----PPADAYFFKLVF-HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 236 ------~~~--ri~~~~~D~~~---~~-----p~~D~i~~~~~l-h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
... ++++..||+.+ .+ ..+|.+++-..- ..-++-.-..+++.+.++++| |+.+.-..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~t~~--- 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRP---GGTFSTFT--- 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEE---EEEEEESC---
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCC---CCEEEecc---
Confidence 011 45667778755 12 248887762211 100111124678888888888 66543210
Q ss_pred CCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEE
Q 018116 299 NEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKIT 347 (360)
Q Consensus 299 ~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
.....++.+.++||.+.++.
T Consensus 212 -----------------------------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 -----------------------------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp -----------------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred -----------------------------CcHHHHHHHHhCCeEEEecc
Confidence 12456777889999877655
|
| >3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=85.66 E-value=0.87 Score=34.24 Aligned_cols=73 Identities=15% Similarity=0.271 Sum_probs=52.5
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcC------CCCCCcccHHHHHHHHHhCCceecccc-CCCC-cccceecch
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALK------IQPTKTSNLFRFMRLLVHMGLFSKTKV-GGEK-EEEAYGLTA 104 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~------~~p~~~~~l~~lL~~L~~~g~l~~~~~-~~~~-~~~~y~~t~ 104 (360)
+.++-.+++-|+..|.. +|.+.-||++.+. + ++..+...|+.|...|+++.... ..++ ....|++|+
T Consensus 9 ~l~~g~l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i---~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~ 83 (117)
T 3elk_A 9 RILHGLITLYILKELVK--RPMHGYELQKSMFETTGQAL---PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITD 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCC---CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECH
T ss_pred HHHhhHHHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCC---CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECH
Confidence 44555566667777775 7999999998875 6 45899999999999999987542 1111 123599999
Q ss_pred hhhhhh
Q 018116 105 ISALLI 110 (360)
Q Consensus 105 ~~~~l~ 110 (360)
.|+...
T Consensus 84 ~G~~~l 89 (117)
T 3elk_A 84 AGKKFL 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998444
|
| >2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... | Back alignment and structure |
|---|
Probab=85.55 E-value=0.81 Score=38.77 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=42.8
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 53 PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 53 ~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.+..+||+.+++ ++..+.++++.|...|++++.. ...+.+|+.|..+..
T Consensus 24 ~~~~~~la~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~~ 73 (226)
T 2qq9_A 24 TPLRARIAERLEQ---SGPTVSQTVARMERDGLVVVAS------DRSLQMTPTGRTLAT 73 (226)
T ss_dssp CCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TSBEEECHHHHHHHH
T ss_pred CccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC------CCCeEECHHHHHHHH
Confidence 4466999999999 5689999999999999999986 467999999986553
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=85.49 E-value=2.6 Score=32.41 Aligned_cols=87 Identities=13% Similarity=0.196 Sum_probs=53.1
Q ss_pred CCEEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCccEEEecccccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY-------IPPADAYFFKLVFHA 265 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~-------~p~~D~i~~~~~lh~ 265 (360)
..+|+=+|||. ++..+++.+ .+.+++++|. ++.++.+++ ..+.++.+|...+ ..++|++++.--
T Consensus 7 ~~~viIiG~G~--~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~--- 80 (140)
T 3fwz_A 7 CNHALLVGYGR--VGSLLGEKLLASDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP--- 80 (140)
T ss_dssp CSCEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS---
T ss_pred CCCEEEECcCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC---
Confidence 35788888864 444444332 3678999999 777776653 5678888998662 135898876421
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
++.....+.. ..+.+.| +.+++.
T Consensus 81 -~~~~n~~~~~-~a~~~~~---~~~iia 103 (140)
T 3fwz_A 81 -NGYEAGEIVA-SARAKNP---DIEIIA 103 (140)
T ss_dssp -CHHHHHHHHH-HHHHHCS---SSEEEE
T ss_pred -ChHHHHHHHH-HHHHHCC---CCeEEE
Confidence 2333333444 4455667 566554
|
| >2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2 | Back alignment and structure |
|---|
Probab=85.35 E-value=0.84 Score=37.80 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++++..+||+.+++ .++.+...++.|...|+++... +...+|+.|..++
T Consensus 29 ~~V~~~~LA~~Lgv---S~~SV~~~lkkL~e~GLV~~~~-------~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSKQ-------RGHFLTLKGKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC---------CEEECHHHHHHH
T ss_pred CCccHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEeC-------CCeEECHHHHHHH
Confidence 58999999999999 5799999999999999999984 7899999998655
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=84.95 E-value=0.91 Score=41.81 Aligned_cols=36 Identities=11% Similarity=0.275 Sum_probs=28.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHC-------CCCeEEEeechH
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAF-------PGIKCTVLDLPH 229 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~~ 229 (360)
+...+|+|+|+|+|.++..+++.+ ..+++..++.+.
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp 121 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP 121 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH
Confidence 345689999999999999888653 355899999933
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=84.69 E-value=2 Score=42.67 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=23.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHC-------C-----CCeEEEeec
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAF-------P-----GIKCTVLDL 227 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~ 227 (360)
+.-+|+|+|-|+|.......+.+ | .++++.++.
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~ 110 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 110 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeC
Confidence 44699999999998777665543 2 245788875
|
| >2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 | Back alignment and structure |
|---|
Probab=84.57 E-value=0.66 Score=33.23 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=38.1
Q ss_pred hCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 41 LGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 41 l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+.|+..|..+ +.+++..|||.++++ +..-+.++|+.|...|++.+..
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l---~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 4455666542 148999999999999 5789999999999999999653
|
| >1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 | Back alignment and structure |
|---|
Probab=84.52 E-value=0.47 Score=45.08 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=51.4
Q ss_pred HhCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++++|..|||+++++ +...+.|+++.|...|+|++....+|+-.-...+|+.++.+..
T Consensus 406 q~~vl~~l~~~~~~~~~~~~l~~~~~~---~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~ 475 (487)
T 1hsj_A 406 EIYILNHILRSESNEISSKEIAKCSEF---KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQ 475 (487)
T ss_dssp HHHHHHHHHTCSCSEEEHHHHHHSSCC---CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHH
Confidence 35667777652 158999999999999 6799999999999999999875322221224888888876553
|
| >2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.47 E-value=0.9 Score=34.34 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=43.5
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
.-.|.+.+.. .|.++.+||+.+++ ++..+..+|+.|+..|.+.+-. ++.|.++..
T Consensus 9 ~~~i~~~~~~--~p~~~~~la~~~~~---~~~~~~~~l~~l~~~G~l~~i~------~~~~~~~~~ 63 (121)
T 2pjp_A 9 WQKAEPLFGD--EPWWVRDLAKETGT---DEQAMRLTLRQAAQQGIITAIV------KDRYYRNDR 63 (121)
T ss_dssp HHHHGGGCSS--SCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEE------TTEEEEHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec------CCceECHHH
Confidence 3445666653 57899999999999 5788999999999999999886 466666554
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=84.46 E-value=4.2 Score=33.40 Aligned_cols=95 Identities=14% Similarity=0.177 Sum_probs=58.2
Q ss_pred EEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC----CCCccEEEeccccccCChhH
Q 018116 198 SIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY----IPPADAYFFKLVFHAFGDED 270 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~----~p~~D~i~~~~~lh~~~~~~ 270 (360)
+||=.| |+|..+..+++.+ .+.++++++. +...+... .+++++.+|+.++ +.++|+|+..-....-....
T Consensus 2 kvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~ 78 (221)
T 3ew7_A 2 KIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEK 78 (221)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTS
T ss_pred eEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcCCccccch
Confidence 455444 5666666666544 3678999988 55444332 6799999999763 24689987655443222222
Q ss_pred HHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 271 CLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 271 ~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.....+++.++++..+ .++++++-.
T Consensus 79 ~~~~~~~l~~a~~~~~-~~~~v~~SS 103 (221)
T 3ew7_A 79 HVTSLDHLISVLNGTV-SPRLLVVGG 103 (221)
T ss_dssp HHHHHHHHHHHHCSCC-SSEEEEECC
T ss_pred HHHHHHHHHHHHHhcC-CceEEEEec
Confidence 4456677777776521 467776654
|
| >1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=84.43 E-value=0.88 Score=36.99 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=46.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHc--------CCCCCCcccHHHHHHHHHhCCceeccccCCCC--cccceecchhhhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSAL--------KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEK--EEEAYGLTAISAL 108 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~--------~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~~~y~~t~~~~~ 108 (360)
++-|+..|.. +|.+.-||++.+ ++ +...+...|+.|...|+++......++ ..-.|++|+.|+.
T Consensus 4 ~~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~---s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~ 77 (179)
T 1yg2_A 4 PHVILTVLST--RDATGYDITKEFSASIGYFWKA---SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRS 77 (179)
T ss_dssp HHHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCC---CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHhCCccCC---CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHH
Confidence 4456677775 799999999988 45 568999999999999999875421111 1234999999973
|
| >2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39 | Back alignment and structure |
|---|
Probab=84.02 E-value=0.54 Score=36.42 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=39.3
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcC----CCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALK----IQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~----~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++.|+..|....++.|..||++.++ + +..-+.++|+-|...|+|.+..
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~~~~~---~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSARRDL---AYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhccCCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 4556666654226999999999998 5 5688999999999999999875
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=83.68 E-value=2.9 Score=36.51 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=50.2
Q ss_pred CEEEEeCCCCc--hHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChhHHHH
Q 018116 197 GSIVDVGGGNG--GFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLK 273 (360)
Q Consensus 197 ~~iLDvG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~ 273 (360)
.+|.=||+|.= .++..+.+..++.+++++|. ++..+.+.+...+.....|..+...+.|+|++. .++.....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILA-----VPIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEEC-----SCHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEc-----CCHHHHHH
Confidence 57888998852 34455555544678999998 665554432111111223332223468998875 35555677
Q ss_pred HHHHHHHh-ccC
Q 018116 274 ILKKCREA-IAG 284 (360)
Q Consensus 274 ~L~~~~~~-L~p 284 (360)
+++.+... +++
T Consensus 82 v~~~l~~~~l~~ 93 (290)
T 3b1f_A 82 FIKILADLDLKE 93 (290)
T ss_dssp HHHHHHTSCCCT
T ss_pred HHHHHHhcCCCC
Confidence 88888887 887
|
| >1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=83.62 E-value=0.67 Score=36.38 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=51.6
Q ss_pred HHHHHHHhCcchhhhhCCCCCCHHHHHHHc--------CCCCCCcccHHHHHHHHHhCCceeccccC-CCC-cccceecc
Q 018116 34 SLKGAVELGIADIIHSHGRPITLSELVSAL--------KIQPTKTSNLFRFMRLLVHMGLFSKTKVG-GEK-EEEAYGLT 103 (360)
Q Consensus 34 ~L~~a~~l~lf~~L~~~~~~~t~~ela~~~--------~~~p~~~~~l~~lL~~L~~~g~l~~~~~~-~~~-~~~~y~~t 103 (360)
+++.-.++-|+..|.. +|.+.-||++.+ ++ ++..+.+.|+.|...|+|+..... +++ ..-.|++|
T Consensus 37 ~~~g~~~~~IL~~L~~--~~~~gyeI~~~l~~~~~~~~~i---s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT 111 (145)
T 1xma_A 37 VIRGYVDTIILSLLIE--GDSYGYEISKNIRIKTDELYVI---KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRIT 111 (145)
T ss_dssp SGGGTHHHHHHHHHHH--CCEEHHHHHHHHHHHHTTSCCC---CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEEC
T ss_pred HhcCcHHHHHHHHHHh--CCCCHHHHHHHHHHhhCCccCc---ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEEC
Confidence 3444456667777765 689999988877 46 579999999999999999876421 001 12349999
Q ss_pred hhhhhhh
Q 018116 104 AISALLI 110 (360)
Q Consensus 104 ~~~~~l~ 110 (360)
+.|+.+.
T Consensus 112 ~~G~~~l 118 (145)
T 1xma_A 112 PEGIKYY 118 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998554
|
| >1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 | Back alignment and structure |
|---|
Probab=83.47 E-value=0.74 Score=31.72 Aligned_cols=37 Identities=16% Similarity=0.359 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+.+++.++|+.+++. ..+++..++.+|.++|++++..
T Consensus 29 ~~i~l~~aa~~L~v~--~kRRiYDI~NVLe~igli~K~~ 65 (76)
T 1cf7_A 29 GVLDLKLAADTLAVR--QKRRIYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp TEEEHHHHHHHTTTC--CTHHHHHHHHHHHHHTSEEEEE
T ss_pred CcCcHHHHHHHhCCc--cceehhhHHHHHhHhcceeecC
Confidence 689999999999993 2599999999999999999985
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=83.38 E-value=0.93 Score=39.11 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=50.6
Q ss_pred HhCcchhhhhCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHG-RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~-~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...+ ++.|..|||+.+++ +...+.++++-|...|++.+....+|.-.-...+|+.|..+..
T Consensus 36 q~~vL~~L~~~~~~~~~~~el~~~l~~---~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~ 105 (250)
T 1p4x_A 36 EFILLTYLFHQQENTLPFKKIVSDLCY---KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIA 105 (250)
T ss_dssp HHHHHHHHHSCSCSEEEHHHHHHHSSS---CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHH
Confidence 355666665421 48999999999999 6799999999999999999875322111123789999886543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=83.01 E-value=3 Score=38.40 Aligned_cols=101 Identities=18% Similarity=0.152 Sum_probs=61.8
Q ss_pred cCCCCEEEEeCCCC-chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe---CCC-CCC------CCCccEEEec
Q 018116 193 FEGLGSIVDVGGGN-GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIA---GDM-FQY------IPPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~---~D~-~~~------~p~~D~i~~~ 260 (360)
..++.+||.+|+|. |.++..+++.....+++++|. ++-++.+++.. .+++. .|+ .+. -.++|+|+-.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-a~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~ 261 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-FETIDLRNSAPLRDQIDQILGKPEVDCGVDA 261 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-CEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CcEEcCCCcchHHHHHHHHhCCCCCCEEEEC
Confidence 66788999999876 888888998764338999997 66666655422 12222 122 110 1159998764
Q ss_pred cccccCC--h----hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 261 LVFHAFG--D----EDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 261 ~~lh~~~--~----~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
---.... . ......++.+.++|++ ||+++++-..
T Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~---gG~iv~~G~~ 301 (398)
T 2dph_A 262 VGFEAHGLGDEANTETPNGALNSLFDVVRA---GGAIGIPGIY 301 (398)
T ss_dssp SCTTCBCSGGGTTSBCTTHHHHHHHHHEEE---EEEEECCSCC
T ss_pred CCCccccccccccccccHHHHHHHHHHHhc---CCEEEEeccc
Confidence 3221100 0 0011357888899999 9998876543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=82.67 E-value=7.2 Score=33.56 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=57.7
Q ss_pred CEEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCCccEEEeccccccCChhHHH
Q 018116 197 GSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIPPADAYFFKLVFHAFGDEDCL 272 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p~~D~i~~~~~lh~~~~~~~~ 272 (360)
.+||=.|+ |..+..+++.+ .+.++++++. +.-.+... ..+++++.+|+.+ ...++|+|+.........++...
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~~ 82 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR-ASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVLA 82 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH-HTTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHHH
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh-hCCCeEEEecccccccCCCCEEEECCCccccccHHHH
Confidence 57999994 88888887765 3568999988 44333222 3568999999865 34568988775554433333334
Q ss_pred HHHHHHHHhccCCCCCcEEEEEee
Q 018116 273 KILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 273 ~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.+++.+.+.-.. -.+++.+-.
T Consensus 83 ~l~~a~~~~~~~---~~~~v~~Ss 103 (286)
T 3ius_A 83 ALGDQIAARAAQ---FRWVGYLST 103 (286)
T ss_dssp HHHHHHHHTGGG---CSEEEEEEE
T ss_pred HHHHHHHhhcCC---ceEEEEeec
Confidence 455554442122 256665543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=82.42 E-value=6.5 Score=29.88 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=42.1
Q ss_pred CCEEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCccEEEec
Q 018116 196 LGSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY-------IPPADAYFFK 260 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~-------~p~~D~i~~~ 260 (360)
..+|+-+||| .++..+++.+ .+.+++++|. ++.++.+.. ..+.++.+|..++ ..++|+++..
T Consensus 6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLED-EGFDAVIADPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-CCCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence 3578888885 4555555543 3678999998 776665542 3578888998662 2368988764
|
| >2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=82.26 E-value=1.1 Score=34.71 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
...|.++||+++|+ ++.-+.++|+-|...|++...
T Consensus 50 ~~ps~~~LA~~~~~---s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 50 YFPTPNQLQEGMSI---SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CSCCHHHHHTTSSS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 46899999999999 679999999999999999985
|
| >2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=82.18 E-value=0.55 Score=37.08 Aligned_cols=50 Identities=18% Similarity=0.379 Sum_probs=40.7
Q ss_pred HHHhCcchhhhhCC-CCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 38 AVELGIADIIHSHG-RPITLSELVSAL-----KIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 38 a~~l~lf~~L~~~~-~~~t~~ela~~~-----~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
-.+.-|++.|.... ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 17 ~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 17 LPRLKILEVLQQPECQHISAEELYKKLIDLGEEI---GLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCcEEEEE
Confidence 34566788886544 689999999988 45 5678999999999999999874
|
| >1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* | Back alignment and structure |
|---|
Probab=81.99 E-value=0.9 Score=40.80 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=44.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
+..|++.|.. ++..|.+|||+.+++ +...+.|-++.|...|++.+... +..|++.+.
T Consensus 7 ~~~Il~~L~~-~~~~s~~eLa~~l~v---S~~ti~r~l~~L~~~G~~i~~~~-----g~GY~l~~~ 63 (321)
T 1bia_A 7 PLKLIALLAN-GEFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP-----GKGYSLPEP 63 (321)
T ss_dssp HHHHHHHHTT-SSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET-----TTEEECSSC
T ss_pred HHHHHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCcEEEec-----CCCcEEeec
Confidence 3456777765 368999999999999 67999999999999999865442 356888653
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=81.98 E-value=3.5 Score=36.95 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=59.4
Q ss_pred cCCCCEEEEeCCCC-chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCC-CeEEEeC--CCCCC----CCCccEEEecccc
Q 018116 193 FEGLGSIVDVGGGN-GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTE-NLKYIAG--DMFQY----IPPADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-ri~~~~~--D~~~~----~p~~D~i~~~~~l 263 (360)
..++.+||-+|+|. |..+..+++.. +.+++++|. ++-.+.+++.. ...+... |+.+. .+++|+++....
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g- 241 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAV- 241 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCC-
Confidence 56788999999875 88888899876 569999998 66666554311 1111111 11110 125888875422
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
. ...++.+.+.|+| ||+++++-.
T Consensus 242 ---~----~~~~~~~~~~l~~---~G~iv~~G~ 264 (340)
T 3s2e_A 242 ---S----PKAFSQAIGMVRR---GGTIALNGL 264 (340)
T ss_dssp ---C----HHHHHHHHHHEEE---EEEEEECSC
T ss_pred ---C----HHHHHHHHHHhcc---CCEEEEeCC
Confidence 1 2457888899999 899987654
|
| >3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=81.96 E-value=0.77 Score=33.92 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=47.7
Q ss_pred HHHHhCcchhhhhCCCCCCHHHHHHHc----CCCCCCcccHHHHHHHHHhCCceeccccCCCC-cccceecchhhhhhh
Q 018116 37 GAVELGIADIIHSHGRPITLSELVSAL----KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEK-EEEAYGLTAISALLI 110 (360)
Q Consensus 37 ~a~~l~lf~~L~~~~~~~t~~ela~~~----~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~-~~~~y~~t~~~~~l~ 110 (360)
...++-|+..|.. +|.+--+|++.+ ++ ++..+.+.|+.|...|+|+......++ ....|++|+.|....
T Consensus 8 g~l~~~IL~~L~~--~~~~gyel~~~l~~~~~i---~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 8 LLIEYLILAIVSK--HDSYGYDISQTIKLIASI---KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHHHHHHHH--SCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCcHHHHHHHHHHHhCC---CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHH
Confidence 3345556666665 688777777764 67 568999999999999999876421111 012399999998544
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=81.76 E-value=8.6 Score=31.58 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=60.1
Q ss_pred EEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC----CCCccEEEecccccc--CCh
Q 018116 198 SIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY----IPPADAYFFKLVFHA--FGD 268 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~----~p~~D~i~~~~~lh~--~~~ 268 (360)
+||=. ||+|..+..+++.+ .+.++++++. +.-.+... ..+++++.+|+.++ +.+.|+|+..-...+ ...
T Consensus 2 kilVt-GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~ 79 (224)
T 3h2s_A 2 KIAVL-GATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL-GATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRG 79 (224)
T ss_dssp EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT-CTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCT
T ss_pred EEEEE-cCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc-CCCceEEecccccccHhhcccCCEEEECCccCCCcchh
Confidence 35544 45677666666654 3678999988 55444332 46799999999763 346898876554421 112
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.......+++.++++.. |++++++-.
T Consensus 80 ~~n~~~~~~l~~a~~~~--~~~~v~~SS 105 (224)
T 3h2s_A 80 YLHLDFATHLVSLLRNS--DTLAVFILG 105 (224)
T ss_dssp HHHHHHHHHHHHTCTTC--CCEEEEECC
T ss_pred hHHHHHHHHHHHHHHHc--CCcEEEEec
Confidence 33456677888888763 577777643
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=81.53 E-value=3.9 Score=37.31 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=59.6
Q ss_pred cCCCCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe-C----CCCC---C-C-CCccEEEec
Q 018116 193 FEGLGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIA-G----DMFQ---Y-I-PPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~-~----D~~~---~-~-p~~D~i~~~ 260 (360)
..++.+||-+|+| .|.++..+++.....+++++|. ++-++.+++..--.++. . |+.+ . . .++|+|+-.
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~ 270 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFEC 270 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEEC
Confidence 5677899999987 4778888888764338999996 66666655421111221 1 1111 0 1 259998754
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCC-cEEEEEeee
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGER-GKVLIMDIV 297 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~g-G~lli~e~~ 297 (360)
- .. ...++.+.+.|++ | |+++++-..
T Consensus 271 ~-----g~---~~~~~~~~~~l~~---g~G~iv~~G~~ 297 (378)
T 3uko_A 271 I-----GN---VSVMRAALECCHK---GWGTSVIVGVA 297 (378)
T ss_dssp S-----CC---HHHHHHHHHTBCT---TTCEEEECSCC
T ss_pred C-----CC---HHHHHHHHHHhhc---cCCEEEEEccc
Confidence 2 22 2457888899999 8 998887654
|
| >2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8 | Back alignment and structure |
|---|
Probab=81.47 E-value=0.29 Score=44.50 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=0.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+..++..|... +++|..|||+.+++ ++.-++|.|+.|...|+++... ....+|+.|+.+..
T Consensus 22 ~~~iL~~l~~~-~~~t~~eLa~~l~v---s~~Tv~r~l~~Le~~Glv~~~~-------~gi~LT~~G~~~~~ 82 (345)
T 2o0m_A 22 RFQILRNIYWM-QPIGRRSLSETMGI---TERVLRTETDVLKQLNLIEPSK-------SGMTLTERGLEVYQ 82 (345)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe-------cceEEcHHHHHHHH
Confidence 56677777664 79999999999999 6789999999999999998553 55889998886654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=81.40 E-value=4.8 Score=36.36 Aligned_cols=93 Identities=10% Similarity=0.056 Sum_probs=58.5
Q ss_pred cCCCCEEEEeCCCC-chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCC------CCCC-----CCCccEEEe
Q 018116 193 FEGLGSIVDVGGGN-GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGD------MFQY-----IPPADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D------~~~~-----~p~~D~i~~ 259 (360)
..++.+||-+|+|. |.++..+++.....+++++|. ++-.+.+++..--.++..+ +.+. ..++|+|+-
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid 248 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 248 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence 56788999999875 788888988764338999987 6555554431111122111 1110 135899875
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.-- . ...++.+.++|+| ||+++++-.
T Consensus 249 ~~g-----~---~~~~~~~~~~l~~---~G~iv~~G~ 274 (356)
T 1pl8_A 249 CTG-----A---EASIQAGIYATRS---GGTLVLVGL 274 (356)
T ss_dssp CSC-----C---HHHHHHHHHHSCT---TCEEEECSC
T ss_pred CCC-----C---hHHHHHHHHHhcC---CCEEEEEec
Confidence 421 1 1347778889999 999988754
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=80.99 E-value=6.8 Score=34.84 Aligned_cols=119 Identities=15% Similarity=0.213 Sum_probs=71.9
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeE-EEeec-hHHHhcCCCCCCeEEEeCCCCC----CCCCccEEEeccccccC-----
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKC-TVLDL-PHAVANMPQTENLKYIAGDMFQ----YIPPADAYFFKLVFHAF----- 266 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~~~ri~~~~~D~~~----~~p~~D~i~~~~~lh~~----- 266 (360)
+|+|+=||.|.++..+-++ +.++ .++|+ +.+++.-+..-.-.++.+|+.+ .+|..|+++...-...+
T Consensus 2 kvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~ 79 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGS 79 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTE
T ss_pred eEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCC
Confidence 6899999999999998877 5654 46777 6555433321123567888865 35679998875433333
Q ss_pred ----ChhHHHHHHH---HHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHC
Q 018116 267 ----GDEDCLKILK---KCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDA 339 (360)
Q Consensus 267 ----~~~~~~~~L~---~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~a 339 (360)
.|+. -.++. ++.+.++| +++++|.+..-.. ........++.+.|++.
T Consensus 80 ~~g~~d~R-~~L~~~~~r~i~~~~P-----k~~~~ENV~gl~~--------------------~~~~~~~~~i~~~l~~~ 133 (331)
T 3ubt_Y 80 LRGIDDPR-GKLFYEYIRILKQKKP-----IFFLAENVKGMMA--------------------QRHNKAVQEFIQEFDNA 133 (331)
T ss_dssp ECCTTCGG-GHHHHHHHHHHHHHCC-----SEEEEEECCGGGG--------------------CTTSHHHHHHHHHHHHH
T ss_pred ccCCCCch-hHHHHHHHHHHhccCC-----eEEEeeeeccccc--------------------ccccchhhhhhhhhccC
Confidence 2322 12333 34445677 5777787642110 01122456778888899
Q ss_pred CCcee
Q 018116 340 GFTHY 344 (360)
Q Consensus 340 Gf~~~ 344 (360)
||.+.
T Consensus 134 GY~v~ 138 (331)
T 3ubt_Y 134 GYDVH 138 (331)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 98643
|
| >2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 | Back alignment and structure |
|---|
Probab=80.79 E-value=1.1 Score=32.85 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=36.9
Q ss_pred HhCcchhhhhCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPI-TLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~-t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|...|.. ++.+ |..+||+.+|+ +..-+++-|+.|...|+++...
T Consensus 30 ~~~I~~~l~~-g~~lps~~eLa~~lgV---Sr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEELDG-NEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHHHTTSSBT-TEEEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhhhcC-CCcCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 3444455544 2455 99999999999 5688999999999999998774
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=80.28 E-value=2.2 Score=38.39 Aligned_cols=125 Identities=11% Similarity=0.095 Sum_probs=74.0
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCeEEEeCCCCC-C---CC--CccEEEeccccccCC
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIK-CTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-Y---IP--PADAYFFKLVFHAFG 267 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~---~p--~~D~i~~~~~lh~~~ 267 (360)
.+++|+=||.|.+...+.++.-+.+ +.++|. +.+.+.-+. .+...+..+|+.+ . ++ .+|+++...--..++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS 83 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT 83 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence 4799999999999999998732224 567888 666554332 3344567788865 1 23 589988755444332
Q ss_pred h--------hHHHHHHHHHHHhccCCCCC-cEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHH
Q 018116 268 D--------EDCLKILKKCREAIAGNGER-GKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLD 338 (360)
Q Consensus 268 ~--------~~~~~~L~~~~~~L~p~~~g-G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~ 338 (360)
. +..-.++..+.++++.. . -+++++|.+..-.. + .+.+.+.+.|++
T Consensus 84 ~ag~~~~~~d~r~~L~~~~~r~i~~~--~~P~~~vlENV~gl~~---------------------~--~~~~~i~~~l~~ 138 (333)
T 4h0n_A 84 RNGKYLDDNDPRTNSFLYLIGILDQL--DNVDYILMENVKGFEN---------------------S--TVRNLFIDKLKE 138 (333)
T ss_dssp ETTEECCTTCTTSCCHHHHHHHGGGC--TTCCEEEEEECTTGGG---------------------S--HHHHHHHHHHHH
T ss_pred hhhhccCCcCcccccHHHHHHHHHHh--cCCCEEEEecchhhhh---------------------h--hHHHHHHHHHHh
Confidence 1 11112333444443220 1 26788887642110 0 134678888999
Q ss_pred CCCceeEE
Q 018116 339 AGFTHYKI 346 (360)
Q Consensus 339 aGf~~~~~ 346 (360)
.||.+...
T Consensus 139 ~GY~v~~~ 146 (333)
T 4h0n_A 139 CNFIYQEF 146 (333)
T ss_dssp TTEEEEEE
T ss_pred CCCeEEEE
Confidence 99976443
|
| >1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A | Back alignment and structure |
|---|
Probab=80.26 E-value=0.63 Score=35.12 Aligned_cols=50 Identities=14% Similarity=0.292 Sum_probs=39.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCC-CCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQ-PTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~-p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++.++..|... ++.|..|||+.++.+ +-+..-+.++|+-|...|+|.+..
T Consensus 12 q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 12 EWDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 45566666653 699999999999741 004688999999999999999976
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 360 | ||||
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 2e-81 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 9e-68 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 4e-52 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 1e-35 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 3e-30 | |
| d1fp2a1 | 101 | a.4.5.29 (A:8-108) Isoflavone O-methyltransferase | 1e-26 | |
| d1fp1d1 | 110 | a.4.5.29 (D:19-128) Chalcone O-methyltransferase { | 6e-26 | |
| d1kyza1 | 107 | a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic | 1e-25 | |
| d1qzza1 | 92 | a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R | 6e-18 | |
| d1tw3a1 | 85 | a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer | 2e-16 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 3e-04 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 7e-04 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 0.003 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 0.004 |
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 246 bits (629), Expect = 2e-81
Identities = 118/245 (48%), Positives = 168/245 (68%), Gaps = 2/245 (0%)
Query: 116 CLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMI 175
CL+P+V +LDP H + KW D++++ G +WD++++NP + FN AM
Sbjct: 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMA 61
Query: 176 SDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMP 235
SDS++ ++DC +F+GL SIVDVGGG G +KII E FP +KC V D P V N+
Sbjct: 62 SDSKLINLALRDCD-FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLS 120
Query: 236 QTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295
+ NL Y+ GDMF IP ADA K + H + D+DCL+ILKKC+EA+ +G+RGKV I+D
Sbjct: 121 GSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID 180
Query: 296 IVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSL 355
+VI++K+D++QVT+ KLL D M+ ++GKER +EEWK LF++AGF HYKI+ + G SL
Sbjct: 181 MVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSL 239
Query: 356 IEVYP 360
IE+YP
Sbjct: 240 IEIYP 244
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 211 bits (538), Expect = 9e-68
Identities = 66/244 (27%), Positives = 130/244 (53%), Gaps = 5/244 (2%)
Query: 117 LSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMIS 176
L+ + + P + + DI +++ VHG +++M ++ ++Q FN++M+
Sbjct: 4 LASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVD 63
Query: 177 DSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ 236
+ + + FEG+ ++VDVGGG+G ++I +P IK DLP + N P
Sbjct: 64 VCATEMKRMLEIY-TGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 122
Query: 237 TENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296
++++ GDMF +P DA K V H + DE C++ L C +A+ GKV+I++
Sbjct: 123 LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKAL---SPNGKVIIVEF 179
Query: 297 VINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKIT-NVFGLKSL 355
++ E+ + + ++ D LM ++V G+ERT+++++ L +GF+ +++ F +
Sbjct: 180 ILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGV 239
Query: 356 IEVY 359
+E Y
Sbjct: 240 MEFY 243
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 171 bits (433), Expect = 4e-52
Identities = 71/243 (29%), Positives = 118/243 (48%), Gaps = 6/243 (2%)
Query: 116 CLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMI 175
+S L D + + + + + +G ++Y +P ++ FN+ M
Sbjct: 4 SISALNLMNQDKVLMESWYHLKDAVL-DGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMS 62
Query: 176 SDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMP 235
S + + + + FEGL S+VDVGGG G I +P IK DLPH + + P
Sbjct: 63 DHSTITMKKILETY-TGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAP 121
Query: 236 QTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295
++++ GDMF IP ADA F K + H + DE CLK LK C EA+ + GKV++ +
Sbjct: 122 SYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEAL---PDNGKVIVAE 178
Query: 296 IVINEKEDKHQVTEAKLLGD-TLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKS 354
++ D T+ + D +++ + GKERT +E++ L AGF +K+
Sbjct: 179 CILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTY 238
Query: 355 LIE 357
++E
Sbjct: 239 IME 241
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 128 bits (322), Expect = 1e-35
Identities = 50/228 (21%), Positives = 89/228 (39%), Gaps = 20/228 (8%)
Query: 146 SVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGG 205
+ +G+ +W+ ++ + L+ F+ M D ++A D + + ++DVGGG
Sbjct: 34 PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGG 91
Query: 206 NGGFSKIISEAFPGIKCTVLDLPHAV-------ANMPQTENLKYIAGD-MFQYIPPADAY 257
NGG I+ P ++ T+++L A+ + + GD AD
Sbjct: 92 NGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVV 151
Query: 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL 317
V + DED L IL+ C A+ G++L++D E + + L D
Sbjct: 152 LLSFVLLNWSDEDALTILRGCVRALE---PGGRLLVLDRADVEGDGADRFFSTLL--DLR 206
Query: 318 MSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLK-----SLIEVYP 360
M + G+ RT +E L AG S++E
Sbjct: 207 MLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 254
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 113 bits (284), Expect = 3e-30
Identities = 50/228 (21%), Positives = 87/228 (38%), Gaps = 21/228 (9%)
Query: 146 SVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGG 205
+E+++GK +++ + P L F+ + D ++A + + ++DVGGG
Sbjct: 33 PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGG 90
Query: 206 NGGFSKIISEAFPGIKCTVLDLPH--------AVANMPQTENLKYIAGDMFQYIPPADAY 257
GGF+ I+ P + TVL++ ADA
Sbjct: 91 KGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAI 150
Query: 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL 317
V + D D ++IL +C EA+ G++LI + + E D
Sbjct: 151 ILSFVLLNWPDHDAVRILTRCAEALE---PGGRILIHERDDLHENS---FNEQFTELDLR 204
Query: 318 MSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFG-----LKSLIEVYP 360
M V + G RT E+W L AG ++ + SL+ + P
Sbjct: 205 MLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 252
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 99.6 bits (248), Expect = 1e-26
Identities = 41/99 (41%), Positives = 61/99 (61%), Gaps = 4/99 (4%)
Query: 14 ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNL 73
E+F+ + + ++ + +MSLK AVE+ I +II +HG+PI+LS LVS L++ +K N+
Sbjct: 5 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV 64
Query: 74 FRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKD 112
R MR L H G F KEEE+Y LT S LL++
Sbjct: 65 RRLMRYLAHNGFFEIIT----KEEESYALTVASELLVRG 99
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 98.3 bits (245), Expect = 6e-26
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 21 QVIRLVFNHLSAMSLKGAVELGIADIIHSHGRP---ITLSELVSALKI---QPTKTSNLF 74
+ L N + L A++L + +II P ++ SE+ S L + L
Sbjct: 9 SAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLD 68
Query: 75 RFMRLLVHMGLFSKTKVGGE--KEEEAYGLTAISALLIKDKS 114
R +RLL + + T E E YGL+ + L+ D+S
Sbjct: 69 RMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDES 110
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 96.8 bits (241), Expect = 1e-25
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKI---QPTKTSNL 73
E + ++L + M LK A+EL + +II G +S + A ++ P L
Sbjct: 6 EANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVML 65
Query: 74 FRFMRLLVHMGLFSKTKVGGE--KEEEAYGLTAISALLIKDK 113
R +RLL + + + + K + YGL ++ L+K++
Sbjct: 66 DRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 75.9 bits (187), Expect = 6e-18
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 22 VIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLV 81
+++ + N ++ M+L+ A L + D + TL+ L P L R +R L
Sbjct: 11 LLKNLGNLVTPMALRVAATLRLVDHL--LAGADTLAGLADRTDTHP---QALSRLVRHLT 65
Query: 82 HMGLFSKTKVGGEKEEEAYGLTAISALL 109
+G+ EK+ T + LL
Sbjct: 66 VVGVLEGG----EKQGRPLRPTRLGMLL 89
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 71.4 bits (175), Expect = 2e-16
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 21 QVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLL 80
+ + + + + M ++ A L + D I + T+ L + +P R +R L
Sbjct: 4 RTLIRLGSLHTPMVVRTAATLRLVDHILAG--ARTVKALAARTDTRPEALL---RLIRHL 58
Query: 81 VHMGLFSKTKVGGEKEEEAYGLTAISALLIKD 112
V +GL E + T + LL D
Sbjct: 59 VAIGLLE------EDAPGEFVPTEVGELLADD 84
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 28/213 (13%), Positives = 54/213 (25%), Gaps = 22/213 (10%)
Query: 153 GKNYWDYMNQNP-GLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSK 211
YW + G+ + D E + + G +D G G G +K
Sbjct: 53 ALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLP---GHGTSRALDCGAGIGRITK 109
Query: 212 IISEAFPGIKCTVLDLPHAVANM----PQTENLKYIAGDMFQYIPPADAYFFKLVFHAFG 267
+ + + H + K+I M P + Y ++
Sbjct: 110 NLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169
Query: 268 DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKER 327
+K + G + + ++ L R
Sbjct: 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLT-------------R 216
Query: 328 TDEEWKTLFLDAGFTHYKITNVFGL-KSLIEVY 359
+D +K LF ++G K L +
Sbjct: 217 SDIHYKRLFNESGVRVVKEAFQEEWPTDLFPLK 249
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 38.4 bits (88), Expect = 7e-04
Identities = 22/159 (13%), Positives = 47/159 (29%), Gaps = 21/159 (13%)
Query: 199 IVDVGGGNGGFSKIISEAFPGIKCTVLDL----------PHAVANMPQTENLKYIAGDMF 248
++D+G G G + S +C +D + + A +
Sbjct: 20 VLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 77
Query: 249 QYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVT 308
D + H F D K +++ + +G + L++D E +
Sbjct: 78 FPDDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDG---RFLLVDHYAPEDPVLDEFV 132
Query: 309 EAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKIT 347
+ +E + EW+ +F + I
Sbjct: 133 NH----LNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQ 167
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.003
Identities = 30/218 (13%), Positives = 53/218 (24%), Gaps = 26/218 (11%)
Query: 153 GKNYWDYM----NQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGG 208
K YW + + G + I+ S + +D G G G
Sbjct: 15 AKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGT-SCALDCGAGIGR 73
Query: 209 FSKIISEAFP------GIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLV 262
+K + I L Y + + P D+Y +
Sbjct: 74 ITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWI 133
Query: 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV 322
G + + R G ++I D + E V +
Sbjct: 134 QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVC---------- 183
Query: 323 DGKERTDEEWKTLFLDAGFTHYKITNVFGL-KSLIEVY 359
R + + + AG + L + VY
Sbjct: 184 ----RDLDVVRRIICSAGLSLLAEERQENLPDEIYHVY 217
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 36.1 bits (82), Expect = 0.004
Identities = 17/148 (11%), Positives = 34/148 (22%), Gaps = 11/148 (7%)
Query: 199 IVDVGGGNGGFSKIISEAFP----GIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIPPA 254
I+D+G G+G + GI + L A + + +
Sbjct: 37 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 96
Query: 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLG 314
+ G +LI + + ++ +A +
Sbjct: 97 ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVS 156
Query: 315 DTLMSVSVDGKERTDEEWKTLFLDAGFT 342
T F D G+
Sbjct: 157 S-------TSDFLTLPGLVGAFDDLGYD 177
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.85 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.82 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.81 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.79 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.77 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.77 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.77 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.75 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.75 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.7 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.69 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.67 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.67 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.65 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.64 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.62 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.62 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.61 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.6 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.6 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.59 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.55 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.52 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.51 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.49 | |
| d1kyza1 | 107 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.48 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.47 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.47 | |
| d1fp1d1 | 110 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.47 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.44 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.43 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.43 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.43 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.42 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.3 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.29 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.29 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.29 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.28 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.28 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.27 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.27 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.25 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.25 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.24 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.16 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.16 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.1 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.03 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.02 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.0 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.95 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.94 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.93 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.84 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.84 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.84 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.8 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.75 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.62 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.5 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.46 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.37 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.34 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.32 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.31 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.3 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.29 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.27 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.22 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.13 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.12 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.11 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.09 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.08 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.05 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.03 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.03 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.0 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.0 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.0 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.95 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.83 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.82 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 97.81 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.72 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.71 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.67 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.63 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.46 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.45 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.29 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.23 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 97.13 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.11 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.76 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.66 | |
| d1r1ua_ | 94 | Metal-sensing transcriptional repressor CzrA {Stap | 96.57 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.53 | |
| d1ub9a_ | 100 | Hypothetical protein PH1061 {Archaeon Pyrococcus h | 96.52 | |
| d1biaa1 | 63 | Biotin repressor, N-terminal domain {Escherichia c | 96.45 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.43 | |
| d1r1ta_ | 98 | SmtB repressor {Cyanobacteria (Synechococcus), pcc | 96.41 | |
| d1u2wa1 | 108 | Cadmium efflux system accessory protein CadC {Stap | 96.27 | |
| d1j5ya1 | 65 | Putative transcriptional regulator TM1602, N-termi | 96.22 | |
| d1z05a1 | 71 | Transcriptional regulator VC2007 N-terminal domain | 95.73 | |
| d1s3ja_ | 143 | Putative transcriptional regulator YusO {Bacillus | 95.72 | |
| d2etha1 | 140 | Putative transcriptional regulator TM0816 {Thermot | 95.61 | |
| d3ctaa1 | 85 | Ta1064 (RFK), N-terminal domain {Thermoplasma acid | 95.48 | |
| d1ulya_ | 190 | Hypothetical protein PH1932 {Pyrococcus horikoshii | 95.46 | |
| d2hr3a1 | 145 | Probable transcriptional regulator PA3067 {Pseudom | 95.44 | |
| d1lnwa_ | 141 | MexR repressor {Pseudomonas aeruginosa [TaxId: 287 | 95.37 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.37 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.34 | |
| d2hoea1 | 62 | N-acetylglucosamine kinase {Thermotoga maritima [T | 95.32 | |
| d1lvaa3 | 64 | C-terminal fragment of elongation factor SelB {Moo | 95.22 | |
| d1xd7a_ | 127 | Hypothetical protein ywnA {Bacillus subtilis [TaxI | 95.13 | |
| d2p4wa1 | 194 | Transcriptional regulatory protein PF1790 {Pyrococ | 95.05 | |
| d1r7ja_ | 90 | Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu | 94.89 | |
| d3broa1 | 135 | Transcriptional regulator OEOE1854 {Oenococcus oen | 94.68 | |
| d1z6ra1 | 70 | Mlc protein N-terminal domain {Escherichia coli [T | 94.68 | |
| d2bv6a1 | 136 | Transcriptional regulator MgrA {Staphylococcus aur | 94.65 | |
| d2d1ha1 | 109 | Hypothetical transcriptional regulator ST1889 {Sul | 94.62 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 94.48 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 94.47 | |
| d1ku9a_ | 151 | DNA-binding protein Mj223 {Archaeon Methanococcus | 94.38 | |
| d1sfxa_ | 109 | Hypothetical protein AF2008 {Archaeoglobus fulgidu | 94.11 | |
| d1yyva1 | 114 | Putative transcriptional regulator YtfH {Salmonell | 94.06 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 93.97 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.94 | |
| d2fbha1 | 137 | Transcriptional regulator PA3341 {Pseudomonas aeru | 93.9 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.89 | |
| d2hzta1 | 95 | Putative transcriptional regulator YtcD {Bacillus | 93.77 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.76 | |
| d1jgsa_ | 138 | Multiple antibiotic resistance repressor, MarR {Es | 93.7 | |
| d2a61a1 | 139 | Transcriptional regulator TM0710 {Thermotoga marit | 93.69 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.64 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 93.52 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.39 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 93.26 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.12 | |
| d1i1ga1 | 60 | LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 93.01 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 92.93 | |
| d3deua1 | 140 | Transcriptional regulator SlyA {Salmonella typhimu | 92.93 | |
| d1ylfa1 | 138 | Hypothetical protein BC1842 {Bacillus cereus [TaxI | 92.91 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.84 | |
| d2cyya1 | 60 | Putative transcriptional regulator PH1519 {Archaeo | 92.68 | |
| d2fbia1 | 136 | Probable transcriptional regulator PA4135 {Pseudom | 92.54 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.37 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.24 | |
| d1lj9a_ | 144 | Transcriptional regulator SlyA {Enterococcus faeca | 92.2 | |
| d2cg4a1 | 63 | Regulatory protein AsnC {Escherichia coli [TaxId: | 92.19 | |
| d1z91a1 | 137 | Organic hydroperoxide resistance transcriptional r | 92.15 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.1 | |
| d2fswa1 | 102 | Hypothetical protein PG0823 {Porphyromonas gingiva | 92.0 | |
| d2cfxa1 | 63 | Transcriptional regulator LrpC {Bacillus subtilis | 91.94 | |
| d1z7ua1 | 108 | Hypothetical protein EF0647 {Enterococcus faecalis | 91.71 | |
| d2frha1 | 115 | Pleiotropic regulator of virulence genes, SarA {St | 91.45 | |
| d1p4xa2 | 125 | Staphylococcal accessory regulator A homolog, SarS | 91.42 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.38 | |
| d1p4xa1 | 125 | Staphylococcal accessory regulator A homolog, SarS | 91.29 | |
| d2isya1 | 63 | Iron-dependent regulator IdeR {Mycobacterium tuber | 91.08 | |
| d1hsja1 | 115 | Staphylococcal accessory regulator A homolog, SarR | 90.93 | |
| d2f2ea1 | 142 | Hypothetical protein PA1607 {Pseudomonas aeruginos | 90.84 | |
| d2ev0a1 | 61 | Manganese transport regulator MntR {Bacillus subti | 90.72 | |
| d1jhfa1 | 71 | LexA repressor, N-terminal DNA-binding domain {Esc | 90.7 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.31 | |
| d2fxaa1 | 162 | Protease production regulatory protein Hpr {Bacill | 90.19 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 90.05 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 89.83 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 89.78 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.64 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 89.19 | |
| d2gxba1 | 59 | Z-alpha domain of dsRNA-specific adenosine deamina | 89.15 | |
| d2obpa1 | 81 | Putative DNA-binding protein ReutB4095 {Ralstonia | 89.01 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 88.76 | |
| d1dpua_ | 69 | C-terminal domain of RPA32 {Human (Homo sapiens) [ | 88.74 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 88.31 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 87.52 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 87.49 | |
| d1j75a_ | 57 | Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | 87.25 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 87.09 | |
| d2fbka1 | 172 | Transcriptional regulator DR1159 {Deinococcus radi | 87.0 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 86.95 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 85.9 | |
| d1xmka1 | 73 | Z-alpha domain of dsRNA-specific adenosine deamina | 84.97 | |
| d2p8ta1 | 69 | Hypothetical protein PH0730 {Pyrococcus horikoshii | 84.8 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 84.45 | |
| d1zyba1 | 73 | Probable transcription regulator BT4300, C-termina | 82.22 | |
| d1q1ha_ | 88 | Transcription factor E/IIe-alpha, N-terminal domai | 82.17 | |
| d1stza1 | 87 | Heat-inducible transcription repressor HrcA, N-ter | 81.31 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 81.24 | |
| d1i5za1 | 69 | Catabolite gene activator protein (CAP), C-termina | 80.72 | |
| d2hs5a1 | 69 | Putative transcriptional regulator RHA1_ro03477 {R | 80.18 | |
| d2gaua1 | 81 | Transcriptional regulator PG0396, C-terminal domai | 80.12 | |
| d1cf7a_ | 67 | Cell cycle transcription factor E2F-4 {Human (Homo | 80.09 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=5.2e-44 Score=313.19 Aligned_cols=241 Identities=27% Similarity=0.542 Sum_probs=206.8
Q ss_pred ChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcCC
Q 018116 116 CLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEG 195 (360)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 195 (360)
|++.++.+++.|.++..|.+|++++++|.+++|+.++|.++|+|+.++|+..+.|+++|...+....+.+++.++ .+++
T Consensus 3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~-~f~~ 81 (244)
T d1fp1d2 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEG 81 (244)
T ss_dssp CCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTT
T ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccC
Confidence 788899988889999999999999999887889999999999999999999999999999988887888888887 3578
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChhHHHHHH
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKIL 275 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L 275 (360)
..+|||||||+|.++..+++++|+++++++|+|++++.+...+|++++.+|+++++|++|+|+++++||+|+|++++++|
T Consensus 82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL 161 (244)
T d1fp1d2 82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFL 161 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHH
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHH
Confidence 89999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEee-CCcee
Q 018116 276 KKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNV-FGLKS 354 (360)
Q Consensus 276 ~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~ 354 (360)
++++++|+| ||+|+|.|.+.++.............+|+.|+...+|+.||.+||+++|++|||+.+++.+. .+..+
T Consensus 162 ~~~~~aL~p---gg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~ 238 (244)
T d1fp1d2 162 SNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLG 238 (244)
T ss_dssp HHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEE
T ss_pred HHHHHHcCC---CcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEecCCCCEE
Confidence 999999999 99999999999876654323334456788888777999999999999999999999999766 57889
Q ss_pred EEEEeC
Q 018116 355 LIEVYP 360 (360)
Q Consensus 355 vi~~~~ 360 (360)
|||++|
T Consensus 239 viE~~K 244 (244)
T d1fp1d2 239 VMEFYK 244 (244)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999997
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=5.3e-43 Score=307.00 Aligned_cols=240 Identities=48% Similarity=0.932 Sum_probs=214.1
Q ss_pred ChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcCC
Q 018116 116 CLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEG 195 (360)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 195 (360)
++++++.+..+|.++.+|..|++.+|++.+++|+.++|.++|+|+.++|+..+.|+++|...+......+.. +.+.+++
T Consensus 2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~-~~~~~~~ 80 (244)
T d1fp2a2 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRD-CDFVFDG 80 (244)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHT-CHHHHTT
T ss_pred ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhh-hcccccC
Confidence 467778887888888999999999999988899999999999999999999999999999887665555443 3334788
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChhHHHHHH
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKIL 275 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L 275 (360)
..+|||||||+|.++..+++++|+++++++|+|++++.+...+||+++.+|+++++|++|+|+++++||+|+|++++++|
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL 160 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRIL 160 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHH
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHH
Confidence 89999999999999999999999999999999999999988999999999999998999999999999999999999999
Q ss_pred HHHHHhccCCCCC---cEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeCCc
Q 018116 276 KKCREAIAGNGER---GKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGL 352 (360)
Q Consensus 276 ~~~~~~L~p~~~g---G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 352 (360)
++++++|+| | |+++|+|.+.++....+........+++.|+. .+|+.||.+||+++|++|||+.++++++++.
T Consensus 161 ~~~~~al~p---gg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~~G~ert~~e~~~ll~~AGf~~~~i~~~~~~ 236 (244)
T d1fp2a2 161 KKCKEAVTN---DGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGF 236 (244)
T ss_dssp HHHHHHHSG---GGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEETT
T ss_pred HHHHHHcCc---ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-CCCcCCCHHHHHHHHHHcCCceEEEEECCCC
Confidence 999999999 7 89999999998876654333334566777764 5899999999999999999999999999999
Q ss_pred eeEEEEeC
Q 018116 353 KSLIEVYP 360 (360)
Q Consensus 353 ~~vi~~~~ 360 (360)
.++||+||
T Consensus 237 ~svIE~~p 244 (244)
T d1fp2a2 237 LSLIEIYP 244 (244)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEeC
Confidence 99999998
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=4.8e-41 Score=295.24 Aligned_cols=239 Identities=30% Similarity=0.493 Sum_probs=215.6
Q ss_pred ChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcCC
Q 018116 116 CLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEG 195 (360)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 195 (360)
++++++.+..++.+++.|.+|++++|+|+ ++|+.++|.++|+|+.++|+..+.|.++|...+......++..+++ .++
T Consensus 4 s~~~~~~~~~~~~~~~~W~~L~~avrtG~-~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~-~~~ 81 (243)
T d1kyza2 4 SISALNLMNQDKVLMESWYHLKDAVLDGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTG-FEG 81 (243)
T ss_dssp CTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TSS
T ss_pred cHHHHHHHhcCHHHHHHHHHHHHHHhhCC-CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhccc-ccC
Confidence 78888888778778999999999999998 6999999999999999999999999999998887777888888873 356
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChhHHHHHH
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKIL 275 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L 275 (360)
..+|||||||+|.+++.+++++|+++++++|+|++++.+...+|++++.+|+++++|.+|+|++++++|+|++++++++|
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL 161 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFL 161 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHH
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHH
Confidence 78999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhccc-CCcccCHHHHHHHHHHCCCceeEEEeeCCcee
Q 018116 276 KKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV-DGKERTDEEWKTLFLDAGFTHYKITNVFGLKS 354 (360)
Q Consensus 276 ~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 354 (360)
++++++|+| ||+++|.|.+.++.............+++.|+..+ +|+.||.+||+++|++|||+.+++++.+...+
T Consensus 162 ~~~~~al~p---gg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~ 238 (243)
T d1kyza2 162 KNCYEALPD---NGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTY 238 (243)
T ss_dssp HHHHHHCCS---SSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEE
T ss_pred HHHHHhcCC---CceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCE
Confidence 999999999 99999999998876554323334457788887764 89999999999999999999999999999999
Q ss_pred EEEEe
Q 018116 355 LIEVY 359 (360)
Q Consensus 355 vi~~~ 359 (360)
|||.+
T Consensus 239 viE~~ 243 (243)
T d1kyza2 239 IMEFL 243 (243)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99864
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=7.1e-39 Score=283.75 Aligned_cols=239 Identities=21% Similarity=0.328 Sum_probs=202.8
Q ss_pred CCChhhhhhhhcCc-cccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhh
Q 018116 114 SYCLSPLVSGILDP-ENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKI 192 (360)
Q Consensus 114 ~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~ 192 (360)
|.++++|+.+.... .....|.+|.+++|+|. ++|+..+|.++|+|+.++|+....|.++|...+....+.+++.++
T Consensus 2 p~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~-~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-- 78 (256)
T d1qzza2 2 PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-- 78 (256)
T ss_dssp TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC--
T ss_pred cHHHHHHHhhcCchhhhHhhHHHHHHHHHhCC-chhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC--
Confidence 45677777553111 12346899999999998 579999999999999999999999999999988888888999998
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCC-CccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQYIP-PADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~~~p-~~D~i~~~~~lh 264 (360)
+++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+|++++.+|++++.| +||+|++.++||
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh 158 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLL 158 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGG
T ss_pred CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcccccc
Confidence 88999999999999999999999999999999999888876652 6899999999998776 699999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCcee
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHY 344 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 344 (360)
+|+++++.++|++++++|+| ||+|+|+|.+.++..... ......+++.|+...+|+.||.++|+++|+++||+++
T Consensus 159 ~~~d~~~~~lL~~i~~~Lkp---gG~llI~d~~~~~~~~~~--~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~ 233 (256)
T d1qzza2 159 NWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGAD--RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALA 233 (256)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH---------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEE
T ss_pred ccCcHHHHHHHHHHHhhcCC---cceeEEEEeccCCCCccc--HHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCcee
Confidence 99999999999999999999 999999998766543331 2344667888888789999999999999999999999
Q ss_pred EEEeeCC-----ceeEEEEeC
Q 018116 345 KITNVFG-----LKSLIEVYP 360 (360)
Q Consensus 345 ~~~~~~~-----~~~vi~~~~ 360 (360)
++++.+. .++|+|++|
T Consensus 234 ~~~~~~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 234 SERTSGSTTLPFDFSILEFTA 254 (256)
T ss_dssp EEEEECCSSCSSCEEEEEEEE
T ss_pred EEEEeCCcCccCceEEEEEEe
Confidence 9988743 468999875
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=3.5e-37 Score=272.76 Aligned_cols=222 Identities=25% Similarity=0.447 Sum_probs=195.2
Q ss_pred cchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchH
Q 018116 130 IFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGF 209 (360)
Q Consensus 130 ~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~ 209 (360)
..+|.+|++++|+|+ ++|+.++|.++|+|+.++|+....|..+|........+.+++.++ +.+..+|||||||+|.+
T Consensus 18 ~~~~~~L~~~vr~G~-~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~VLDvGcG~G~~ 94 (253)
T d1tw3a2 18 DISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGF 94 (253)
T ss_dssp GGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHH
T ss_pred cccHHHHHHHHHhCC-chhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC--CccCCEEEEeCCCCCHH
Confidence 456899999999998 689999999999999999999999999999988888889999999 88999999999999999
Q ss_pred HHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCC-CccEEEeccccccCChhHHHHHHHHHHHh
Q 018116 210 SKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQYIP-PADAYFFKLVFHAFGDEDCLKILKKCREA 281 (360)
Q Consensus 210 ~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~ 281 (360)
+..+++++|+++++++|+|++++.+++ .+|++++.+|++++.| +||+|+++++||||+++++.++|++++++
T Consensus 95 ~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~ 174 (253)
T d1tw3a2 95 AAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEA 174 (253)
T ss_dssp HHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHh
Confidence 999999999999999999888776653 5899999999988665 69999999999999999999999999999
Q ss_pred ccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeCC-----ceeEE
Q 018116 282 IAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFG-----LKSLI 356 (360)
Q Consensus 282 L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~-----~~~vi 356 (360)
|+| ||+|+|.|...+...... .....+++.|+...+|+.||.++|+++|+++||++++++.++. ...+|
T Consensus 175 LkP---GG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~li 248 (253)
T d1tw3a2 175 LEP---GGRILIHERDDLHENSFN---EQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLL 248 (253)
T ss_dssp EEE---EEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEE
T ss_pred cCC---CcEEEEEeccCCCCCcch---hHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEEE
Confidence 999 999999998766544332 3345677888877789999999999999999999999987743 35577
Q ss_pred EEeC
Q 018116 357 EVYP 360 (360)
Q Consensus 357 ~~~~ 360 (360)
++.|
T Consensus 249 ~~~P 252 (253)
T d1tw3a2 249 VLAP 252 (253)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7765
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.85 E-value=1.5e-20 Score=162.24 Aligned_cols=164 Identities=14% Similarity=0.134 Sum_probs=124.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIPPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~~~ 261 (360)
..+..+|||||||+|..+..+++.. |+.+++|+|+ +.|++.|++ ..++++...|+.. +.+.+|++++..
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence 3577899999999999999999864 7999999999 999998863 5678888888876 556799999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc-c-------------CCccc
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS-V-------------DGKER 327 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~-------------~g~~~ 327 (360)
++|+++.++..++|++++++|+| ||.+++.|...+......... ......+..... . .-...
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~Lkp---gG~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINHLL-IDLHHQFKRANGYSELEVSQKRTALENVMRTD 192 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEEE---EEEEEEEEECCCSSHHHHHHH-HHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCC
T ss_pred eccccChhhHHHHHHHHHHhCCC---CceeecccccccccchhhhHH-HHHHHHHHHHcCCCHHHHHHHHHHhhcccCCC
Confidence 99999988889999999999999 999999998876654321110 001111100000 0 01235
Q ss_pred CHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 328 TDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
+.+++.++|+++||+.++++.-...+..+.|+|
T Consensus 193 s~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 193 SIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 889999999999999998876555566677765
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.82 E-value=8.6e-20 Score=157.81 Aligned_cols=151 Identities=15% Similarity=0.270 Sum_probs=116.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--C
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--P 253 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~ 253 (360)
.+++..+ +.+..+|||||||+|.++..+++.. .+++++|+ +.+++.|++ .++++|.++|+.+ +++ .
T Consensus 6 ~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 6 KLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHhcC--CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence 4555566 7889999999999999999999884 58999999 999887753 5789999999987 555 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh--hhcccCCcccCHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL--MSVSVDGKERTDEE 331 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~--~~~~~~g~~~t~~e 331 (360)
||+|++.+++||+++.+ ++|++++++|+| ||++++.+...+...... ...+.. .......+.++.++
T Consensus 82 fD~v~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 150 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPNPA--SFVSEAYRVLKK---GGQLLLVDNSAPENDAFD------VFYNYVEKERDYSHHRAWKKSD 150 (231)
T ss_dssp EEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEBCSSHHHH------HHHHHHHHHHCTTCCCCCBHHH
T ss_pred cccccccccccccCCHH--HHHHHHHHhcCC---CcEEEEEeCCCCCCHHHH------HHHHHHHhhcccCcccCCCHHH
Confidence 99999999999998864 789999999999 999999998766532211 111111 11112235668899
Q ss_pred HHHHHHHCCCceeEEEee
Q 018116 332 WKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~~ 349 (360)
|.++|+++||+++++...
T Consensus 151 ~~~~l~~aGf~~~~~~~~ 168 (231)
T d1vl5a_ 151 WLKMLEEAGFELEELHCF 168 (231)
T ss_dssp HHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEEe
Confidence 999999999998876543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.81 E-value=8.4e-20 Score=162.87 Aligned_cols=153 Identities=17% Similarity=0.278 Sum_probs=119.6
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP 252 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p 252 (360)
...+....+ ++++.+|||||||+|.++..+++++ +++++++|+ +.+++.+++ .++++|+++|+.+ +++
T Consensus 56 ~~~l~~~~~--l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~ 132 (282)
T d2o57a1 56 ASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE 132 (282)
T ss_dssp HHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccccccccccccc
Confidence 344444455 7788999999999999999999875 679999999 888887764 5799999999987 555
Q ss_pred --CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHH
Q 018116 253 --PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDE 330 (360)
Q Consensus 253 --~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~ 330 (360)
.||+|++..++||+++. .++|++++++|+| ||++++.+............ ....+... .....+.+
T Consensus 133 ~~sfD~V~~~~~l~h~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~s~~ 200 (282)
T d2o57a1 133 DNSYDFIWSQDAFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDGIDKSSI---QPILDRIK----LHDMGSLG 200 (282)
T ss_dssp TTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTTCCGGGG---HHHHHHHT----CSSCCCHH
T ss_pred ccccchhhccchhhhccCH--HHHHHHHHHhcCC---CcEEEEEEeecCCCCchhHH---HHHHHHhc----cCCCCCHH
Confidence 49999999999999875 4789999999999 99999999887764433211 11111111 12345889
Q ss_pred HHHHHHHHCCCceeEEEee
Q 018116 331 EWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~ 349 (360)
+|.++++++||+.+.+...
T Consensus 201 ~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 201 LYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp HHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHcCCceEEEEEC
Confidence 9999999999998888765
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.79 E-value=2.5e-19 Score=157.02 Aligned_cols=147 Identities=19% Similarity=0.245 Sum_probs=116.3
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--Ccc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~D 255 (360)
.+++.++ ..+..+|||||||+|.++..|+..+.. +++++|. +.+++.|++ ..+++|.++|+.+ +++ .||
T Consensus 84 ~fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T d1xtpa_ 84 NFIASLP--GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHTST--TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHhhCC--CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence 4455555 567889999999999999998877543 8999999 999988764 4668999999876 433 499
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTL 335 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~l 335 (360)
+|++.+++||+++++..++|++++++|+| ||.|+|.+.+....... .+. ..+...|+.++|+++
T Consensus 161 ~I~~~~vl~hl~d~d~~~~l~~~~~~Lkp---gG~iii~e~~~~~~~~~---------~d~----~d~~~~rs~~~~~~l 224 (254)
T d1xtpa_ 161 LIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRFL---------VDK----EDSSLTRSDIHYKRL 224 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCEE---------EET----TTTEEEBCHHHHHHH
T ss_pred eEEeeccccccchhhhHHHHHHHHHhcCC---CcEEEEEecCCCCCcce---------ecc----cCCceeCCHHHHHHH
Confidence 99999999999999999999999999999 99999998776543221 010 112345799999999
Q ss_pred HHHCCCceeEEEee
Q 018116 336 FLDAGFTHYKITNV 349 (360)
Q Consensus 336 l~~aGf~~~~~~~~ 349 (360)
|+++||++++...-
T Consensus 225 ~~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 225 FNESGVRVVKEAFQ 238 (254)
T ss_dssp HHHHTCCEEEEEEC
T ss_pred HHHcCCEEEEEEee
Confidence 99999999887653
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.77 E-value=1.4e-18 Score=150.49 Aligned_cols=150 Identities=17% Similarity=0.263 Sum_probs=116.8
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--C
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--P 253 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~ 253 (360)
.+++..+ ++++.+|||||||+|.++..++++. .+++++|+ +.+++.|++ .+++.++++|+.+ +++ .
T Consensus 7 ~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 82 (234)
T d1xxla_ 7 LMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 82 (234)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred HHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence 3556677 8899999999999999999999875 58999999 899888764 4689999999987 555 4
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhh-hhh-cccCCcccCHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDT-LMS-VSVDGKERTDEE 331 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~-~~~~g~~~t~~e 331 (360)
||+|++.+++||+++. .++|++++++|+| ||++++.+...+...... .+++. ... .....+..+..+
T Consensus 83 fD~v~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 151 (234)
T d1xxla_ 83 FDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPEDPVLD------EFVNHLNRLRDPSHVRESSLSE 151 (234)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCSSHHHH------HHHHHHHHHHCTTCCCCCBHHH
T ss_pred cceeeeeceeecccCH--HHHHHHHHHeeCC---CcEEEEEEcCCCCCHHHH------HHHHHHHhhCCCcccccCCHHH
Confidence 9999999999999875 5789999999999 999999988765432211 11111 111 112345668999
Q ss_pred HHHHHHHCCCceeEEEe
Q 018116 332 WKTLFLDAGFTHYKITN 348 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~ 348 (360)
|..+++++||.+..+..
T Consensus 152 ~~~~~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 152 WQAMFSANQLAYQDIQK 168 (234)
T ss_dssp HHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHCCCceeEEEE
Confidence 99999999998766544
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.3e-19 Score=152.60 Aligned_cols=139 Identities=14% Similarity=0.214 Sum_probs=113.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.|++ ..+++|+++|+.+ +.+ .||+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 35678999999999999999887664 48999999 999988764 3568999999977 443 5999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCc
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 342 (360)
+||+++++..++|++++++|+| ||.+++.+.......... . ......++.++|+++|+++||+
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~---~G~~~i~~~~~~~~~~~~----------~----~~~~~~~~~~~~~~l~~~aGf~ 199 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEGVILD----------D----VDSSVCRDLDVVRRIICSAGLS 199 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSSEEEE----------T----TTTEEEEBHHHHHHHHHHTTCC
T ss_pred cccchhhhhhhHHHHHHHhcCC---cceEEEEEcccccccccc----------c----CCceeeCCHHHHHHHHHHcCCE
Confidence 9999999888999999999999 999999998765532210 0 0123456899999999999999
Q ss_pred eeEEEee
Q 018116 343 HYKITNV 349 (360)
Q Consensus 343 ~~~~~~~ 349 (360)
+++....
T Consensus 200 ii~~~~q 206 (222)
T d2ex4a1 200 LLAEERQ 206 (222)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9887664
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.7e-18 Score=150.99 Aligned_cols=152 Identities=17% Similarity=0.121 Sum_probs=117.7
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP-- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p-- 252 (360)
..+.+.+. +.++.+|||||||+|.++..++++++ ++++++|+ +.+++.+++ .++++|+.+|+.+..+
T Consensus 23 ~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~ 99 (245)
T d1nkva_ 23 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 99 (245)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence 34555666 78899999999999999999998875 79999999 888887653 5789999999987433
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
.||+|++..++||+++. .++|++++++|+| ||++++.+.......... ...... . ........+..++
T Consensus 100 ~fD~v~~~~~~~~~~d~--~~~l~~~~r~LkP---GG~l~i~~~~~~~~~~~~---~~~~~~--~--~~~~~~~~~~~~~ 167 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---EIAQAC--G--VSSTSDFLTLPGL 167 (245)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---HHHHTT--T--CSCGGGSCCHHHH
T ss_pred ceeEEEEEehhhccCCH--HHHHHHHHHHcCc---CcEEEEEeccccCCCChH---HHHHHh--c--cCCCcccCCHHHH
Confidence 59999999999999875 4789999999999 999999998766544332 111111 0 0011235588999
Q ss_pred HHHHHHCCCceeEEEee
Q 018116 333 KTLFLDAGFTHYKITNV 349 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~ 349 (360)
..+++++||.++.....
T Consensus 168 ~~~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 168 VGAFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHcCCEEEEEEeC
Confidence 99999999998876543
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.75 E-value=4.1e-19 Score=131.40 Aligned_cols=98 Identities=40% Similarity=0.677 Sum_probs=86.6
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecccc
Q 018116 12 VRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKV 91 (360)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~ 91 (360)
+.+.+++...+|++++||+.+++|++|+++||||.|..+++|+|++|||++++++|.+.+.+.|+||+|++.|++.++++
T Consensus 3 ~~e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~~ 82 (101)
T d1fp2a1 3 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITK 82 (101)
T ss_dssp STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEES
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCCCCccchHHHHHHHHHHhCCceeeecC
Confidence 35677889999999999999999999999999999986568999999999999977566789999999999999987542
Q ss_pred CCCCcccceecchhhhhhhcCC
Q 018116 92 GGEKEEEAYGLTAISALLIKDK 113 (360)
Q Consensus 92 ~~~~~~~~y~~t~~~~~l~~~~ 113 (360)
. +++|++|+.|++|++++
T Consensus 83 ~----~~~Y~lt~~s~~Lv~~~ 100 (101)
T d1fp2a1 83 E----EESYALTVASELLVRGS 100 (101)
T ss_dssp S----SEEEEECHHHHTTSTTS
T ss_pred C----CCeEecCHHHHHhhcCC
Confidence 1 57899999999988765
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=1.5e-17 Score=141.28 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=103.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEEeccccccCChh
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~ 269 (360)
.+..+|||||||+|.++..+. +++++|+ +.+++.++ ..+++++.+|+.+ +.+ .||+|++.++|||+++.
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~-~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~ 107 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIAR-KRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP 107 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHH-HTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred CCCCeEEEECCCCcccccccc------eEEEEeCChhhccccc-cccccccccccccccccccccccccccccccccccc
Confidence 345689999999999987773 4589999 99999887 3479999999977 554 59999999999999875
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh-hcccCCcccCHHHHHHHHHHCCCceeEEEe
Q 018116 270 DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM-SVSVDGKERTDEEWKTLFLDAGFTHYKITN 348 (360)
Q Consensus 270 ~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
.++|++++++|+| ||++++.++...... .......... ....+...+|.+++.++|+++||+++++..
T Consensus 108 --~~~l~~~~~~L~p---gG~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 108 --ERALKEAYRILKK---GGYLIVGIVDRESFL------GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp --HHHHHHHHHHEEE---EEEEEEEEECSSSHH------HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred --ccchhhhhhcCCC---CceEEEEecCCcchh------HHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 5789999999999 999999886543210 0001111111 111234567999999999999999888765
Q ss_pred e
Q 018116 349 V 349 (360)
Q Consensus 349 ~ 349 (360)
.
T Consensus 177 ~ 177 (208)
T d1vlma_ 177 T 177 (208)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=9.4e-17 Score=142.08 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=121.8
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~ 254 (360)
+.+++++. ++++.+|||||||+|.++..+++.+ +++++++|+ ++.++.+++ ..++.+...|.......|
T Consensus 42 ~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f 118 (280)
T d2fk8a1 42 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 118 (280)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence 44666666 7889999999999999999988876 479999999 888776653 567888888865444469
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchh----hh-hHhHhhhhhh-hcccCCcccC
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQ----VT-EAKLLGDTLM-SVSVDGKERT 328 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~----~~-~~~~~~d~~~-~~~~~g~~~t 328 (360)
|.|++..+++|++++....+|++++++|+| ||+++|.+.+......... .. ......++.. ....+|...+
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~Lkp---gG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS 195 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 195 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccCC---CceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccc
Confidence 999999999999998888999999999999 9999998876544221100 00 0011122221 2234677889
Q ss_pred HHHHHHHHHHCCCceeEEEee
Q 018116 329 DEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.+++.+.++++||.+..+..+
T Consensus 196 ~~~l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 196 TEMMVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp HHHHHHHHHHTTCBCCCCEEC
T ss_pred hHhhhhhHHhhccccceeeec
Confidence 999999999999999887765
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.69 E-value=3.1e-16 Score=138.68 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=123.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~ 254 (360)
+.+++++. +.++.+|||||||.|.++..+++.+ +++++++++ +..++.+++ .+++++..+|+......|
T Consensus 52 ~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f 128 (285)
T d1kpga_ 52 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 128 (285)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence 45666777 8899999999999999999999998 589999999 776665542 689999999986533469
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch-----hhhhHhHhhhhh-hhcccCCcccC
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH-----QVTEAKLLGDTL-MSVSVDGKERT 328 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~-----~~~~~~~~~d~~-~~~~~~g~~~t 328 (360)
|.|++..++.|+..+....++++++++|+| ||++++.+.+...+.... .........++. .....+|...+
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPs 205 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS 205 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcCC---CCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCC
Confidence 999999999999877677899999999999 999999888754321110 000011111221 22234677889
Q ss_pred HHHHHHHHHHCCCceeEEEee
Q 018116 329 DEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.+++..+++++||++.++..+
T Consensus 206 l~~~~~~~e~agf~v~~~~~~ 226 (285)
T d1kpga_ 206 IPMVQECASANGFTVTRVQSL 226 (285)
T ss_dssp HHHHHHHHHTTTCEEEEEEEC
T ss_pred hhhHHHHHHHhchhhcccccc
Confidence 999999999999999988776
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.67 E-value=9.6e-17 Score=142.57 Aligned_cols=152 Identities=16% Similarity=0.235 Sum_probs=108.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D~i~~~~~l 263 (360)
...+.+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++ ..+++|+.+|+.+ +++ +||+|++.+++
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l 104 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 104 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence 56778999999999999999999887 578999999 888888764 4479999999977 444 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC--------CcchhhhhHhHhhhhhhhc-ccCCcc-cCHHHHH
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK--------EDKHQVTEAKLLGDTLMSV-SVDGKE-RTDEEWK 333 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~--------~~~~~~~~~~~~~d~~~~~-~~~g~~-~t~~e~~ 333 (360)
||+++++ ++|++++++|+| ||.+++.|+..... ...........+..+.... ...+.. ....++.
T Consensus 105 ~~~~d~~--~~l~~~~~~Lkp---gG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 179 (281)
T d2gh1a1 105 LHMTTPE--TMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP 179 (281)
T ss_dssp GGCSSHH--HHHHHHHHTEEE---EEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTGGGTHH
T ss_pred hcCCCHH--HHHHHHHHHcCc---CcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999864 689999999999 99999998642211 0000000001111111100 112221 1224678
Q ss_pred HHHHHCCCceeEEEee
Q 018116 334 TLFLDAGFTHYKITNV 349 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~ 349 (360)
.+|+++||+.+++...
T Consensus 180 ~~l~eaGf~~i~~~~~ 195 (281)
T d2gh1a1 180 IYLSELGVKNIECRVS 195 (281)
T ss_dssp HHHHHTTCEEEEEEEC
T ss_pred HHHHHcCCeEEEEEEe
Confidence 8999999998887543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=6.2e-16 Score=137.14 Aligned_cols=161 Identities=16% Similarity=0.185 Sum_probs=122.2
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~ 254 (360)
+.+++++. ++++.+|||||||.|.++..++++++ ++++++++ ++.++.+++ .+++.+...|.......|
T Consensus 51 ~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f 127 (291)
T d1kpia_ 51 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 127 (291)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence 45667777 88999999999999999999999885 79999999 776665442 678999999875444469
Q ss_pred cEEEeccccccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhh-----hhHhHhhhhh-hhcc
Q 018116 255 DAYFFKLVFHAFGD-------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQV-----TEAKLLGDTL-MSVS 321 (360)
Q Consensus 255 D~i~~~~~lh~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~-----~~~~~~~d~~-~~~~ 321 (360)
|.|++..++.|+++ +.-..++++++++|+| ||++++...+.++....... .......++. ....
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiF 204 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 204 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCC---CCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhc
Confidence 99999999999986 3456899999999999 99999998887653211000 0001111221 1223
Q ss_pred cCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 322 VDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 322 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.+|...+..++...++++||++..+..+
T Consensus 205 pgg~lps~~~~~~~~e~~gl~v~~~~~~ 232 (291)
T d1kpia_ 205 PGGRLPRISQVDYYSSNAGWKVERYHRI 232 (291)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEEEC
T ss_pred CCCCCCCHHHHHhhhcccccccceeeec
Confidence 4678889999999999999999988776
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.65 E-value=7.8e-16 Score=132.16 Aligned_cols=144 Identities=15% Similarity=0.189 Sum_probs=104.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCC-CccEEEeccccccCC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-YIP-PADAYFFKLVFHAFG 267 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~~~ 267 (360)
...+.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.. +.+ .||+|++.++|||++
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence 345678999999999999999887 457999999 889998874 5689999999866 334 599999999999998
Q ss_pred hhHHHHHHHHHH-HhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhh-------h--hhcccCCcccCHHHHHHHHH
Q 018116 268 DEDCLKILKKCR-EAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDT-------L--MSVSVDGKERTDEEWKTLFL 337 (360)
Q Consensus 268 ~~~~~~~L~~~~-~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~-------~--~~~~~~g~~~t~~e~~~ll~ 337 (360)
++ .++|++++ ++|+| ||.+++..+.... ... ........ . -......+.++.++++++++
T Consensus 96 d~--~~~l~~i~~~~Lk~---gG~l~i~~pn~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~ 165 (225)
T d2p7ia1 96 DP--VALLKRINDDWLAE---GGRLFLVCPNANA---VSR--QIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDAS 165 (225)
T ss_dssp SH--HHHHHHHHHTTEEE---EEEEEEEEECTTC---HHH--HHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHH
T ss_pred CH--HHHHHHHHHHhcCC---CceEEEEeCCccc---HHH--HHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHH
Confidence 86 46799998 78999 8888886543221 100 00000000 0 00001124568999999999
Q ss_pred HCCCceeEEEe
Q 018116 338 DAGFTHYKITN 348 (360)
Q Consensus 338 ~aGf~~~~~~~ 348 (360)
++||++++...
T Consensus 166 ~~Gf~i~~~~~ 176 (225)
T d2p7ia1 166 RAGLQVTYRSG 176 (225)
T ss_dssp HTTCEEEEEEE
T ss_pred HCCCEEEEEEE
Confidence 99999887543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.64 E-value=8.5e-16 Score=129.25 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=89.4
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-Ccc
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP-PAD 255 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p-~~D 255 (360)
++.... ...+.+|||||||+|..+..++++ +.+++++|+ +.+++.++. .+++++...|+.+ ..+ .||
T Consensus 22 ~~~~~~--~~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD 97 (198)
T d2i6ga1 22 VLAAAK--VVAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYD 97 (198)
T ss_dssp HHHHHT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEE
T ss_pred HHHHcc--cCCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccccccc
Confidence 444444 345569999999999999999998 578999999 888887653 4679999999977 333 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
+|++..++||+++++..++|++++++|+| ||++++.....
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~~~~~~~~~ 137 (198)
T d2i6ga1 98 FILSTVVMMFLEAQTIPGLIANMQRCTKP---GGYNLIVAAMD 137 (198)
T ss_dssp EEEEESCGGGSCTTHHHHHHHHHHHTEEE---EEEEEEEEEBC
T ss_pred EEEEeeeeecCCHHHHHHHHHHHHHHcCC---CcEEEEEEecC
Confidence 99999999999998889999999999999 89888876653
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=7.9e-16 Score=131.74 Aligned_cols=100 Identities=20% Similarity=0.372 Sum_probs=87.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CccEEEeccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP--PADAYFFKLVFH 264 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh 264 (360)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.|++ ...+.++.+|+.+ +.+ .||+|++.+++|
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence 46689999999999999999985 679999999 999988764 5678899999877 554 599999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
|+++++..++|+++.++|+| ||++++.....
T Consensus 114 ~~~~~d~~~~l~~i~~~Lkp---gG~lii~~~~~ 144 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTDL 144 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEE---EEEEEEEEECH
T ss_pred hCChhHHHHHHHHHHHHcCc---CcEEEEEEcCc
Confidence 99988888999999999999 99998876543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.62 E-value=6.5e-16 Score=134.45 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=79.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CccEEEec-cccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PADAYFFK-LVFH 264 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D~i~~~-~~lh 264 (360)
.+..+|||||||+|.++..++++ +.+++|+|+ +.|++.|++ ..+++++++|+.+ +.+ .||+|++. ++++
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence 44679999999999999999998 458999999 999988764 4589999999976 444 59999875 6787
Q ss_pred cC-ChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 265 AF-GDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 265 ~~-~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
|+ +.++..++|++++++|+| ||.+++
T Consensus 114 ~~~~~~~~~~~l~~~~~~Lkp---gG~~i~ 140 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKE---GGVFIF 140 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEE---EEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCC---CeEEEE
Confidence 76 466788899999999999 887765
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.61 E-value=3.6e-16 Score=112.06 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceec
Q 018116 23 IRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGL 102 (360)
Q Consensus 23 ~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~ 102 (360)
+..+.+++.+.+|++|+++|||++|.. +|+|++|||+++|+ ++..+.|+||+|++.|++++++ ++.|++
T Consensus 6 l~~l~~~~~~~aL~~av~L~ifd~l~~--gp~s~~eLA~~~g~---~~~~l~rlLr~l~a~gl~~e~~------~~~y~l 74 (85)
T d1tw3a1 6 LIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA------PGEFVP 74 (85)
T ss_dssp HHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE------TTEEEE
T ss_pred HHHHHchHHHHHHHHHHHcCcHHHhcc--CCCCHHHHHHHhCc---ChhHHHHHHHHHHHCCCeEecC------CCeEec
Confidence 445578999999999999999999985 89999999999999 5799999999999999999987 689999
Q ss_pred chhhhhhhcCC
Q 018116 103 TAISALLIKDK 113 (360)
Q Consensus 103 t~~~~~l~~~~ 113 (360)
|+.|+.|.+|+
T Consensus 75 t~~s~~L~~Dh 85 (85)
T d1tw3a1 75 TEVGELLADDH 85 (85)
T ss_dssp CTTGGGGSTTS
T ss_pred CHHHHHhhcCC
Confidence 99999998875
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.60 E-value=3.8e-15 Score=127.63 Aligned_cols=142 Identities=12% Similarity=0.075 Sum_probs=109.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC----CCCCeEEEeCCCCCCC---C-CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP----QTENLKYIAGDMFQYI---P-PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~ri~~~~~D~~~~~---p-~~D~i~~~~~l 263 (360)
+.++.+|||||||+|.++..+++..|+.+++++|+ +.+++.+. ..+++..+.+|...+. + .+|++++.+.+
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~ 151 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV 151 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence 67899999999999999999999999999999999 88877654 3678888988887632 2 47887777788
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCce
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
|++++. ..+++++++.|+| ||++++.+.........+ .....+++.+.|+++||++
T Consensus 152 ~~~~~~--~~~l~~~~r~LKp---gG~~~i~~k~~~~d~~~~-------------------~~~~~~e~~~~L~~aGF~i 207 (230)
T d1g8sa_ 152 AQPNQA--EILIKNAKWFLKK---GGYGMIAIKARSIDVTKD-------------------PKEIFKEQKEILEAGGFKI 207 (230)
T ss_dssp CSTTHH--HHHHHHHHHHEEE---EEEEEEEEEGGGTCSSSC-------------------HHHHHHHHHHHHHHHTEEE
T ss_pred cchHHH--HHHHHHHHHhccc---CceEEEEeeccccCCCCC-------------------HHHHHHHHHHHHHHcCCEE
Confidence 876654 5679999999999 999998876654433221 0113467889999999999
Q ss_pred eEEEeeCCc---eeEEEE
Q 018116 344 YKITNVFGL---KSLIEV 358 (360)
Q Consensus 344 ~~~~~~~~~---~~vi~~ 358 (360)
++...+..+ +.++++
T Consensus 208 ve~idL~py~~~H~~vvg 225 (230)
T d1g8sa_ 208 VDEVDIEPFEKDHVMFVG 225 (230)
T ss_dssp EEEEECTTTSTTEEEEEE
T ss_pred EEEecCCCCcCCeEEEEE
Confidence 999888543 555443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.60 E-value=2.1e-15 Score=131.37 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=87.1
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CccE
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PADA 256 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D~ 256 (360)
++..+. ..+.++|||||||+|..+..+++. +.+++++|+ +.|++.|++ ..++++.++|+.+ +++ .||+
T Consensus 33 ~~~~~~--~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~ 108 (251)
T d1wzna1 33 IFKEDA--KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (251)
T ss_dssp HHHHTC--SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHhc--CCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhcccccccch
Confidence 444444 567789999999999999999986 568999999 999998874 4589999999977 555 5999
Q ss_pred EEec-cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 257 YFFK-LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 257 i~~~-~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
|++. .+++|++.++..++|++++++|+| ||.+++..
T Consensus 109 I~~~~~~~~~~~~~~~~~~L~~~~~~Lkp---gG~lii~~ 145 (251)
T d1wzna1 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKP---GGVFITDF 145 (251)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred HhhhhhhhhcCChHHHHHHHHHHHHHcCC---CcEEEEEe
Confidence 9986 688888888889999999999999 88887643
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.59 E-value=4e-15 Score=124.55 Aligned_cols=103 Identities=12% Similarity=0.129 Sum_probs=88.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------CCCeEEEeCCCCCCCC-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------------------TENLKYIAGDMFQYIP- 252 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~ri~~~~~D~~~~~p- 252 (360)
..++.+|||||||+|..+..|+++ +.+++++|+ +.+++.+++ ...+++..+|+....+
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 678899999999999999999998 899999999 999987763 3456888898877322
Q ss_pred ---CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 253 ---PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 253 ---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
.+|+|++..++|++++++...++++++++|+| ||++++.......
T Consensus 96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkp---gG~l~l~~~~~~~ 143 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQ 143 (201)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCS
T ss_pred cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCC---CcEEEEEEccccc
Confidence 59999999999999998889999999999999 9998877655443
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.1e-14 Score=122.28 Aligned_cols=130 Identities=9% Similarity=-0.017 Sum_probs=103.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEeCCCC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------------------TENLKYIAGDMF 248 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~ri~~~~~D~~ 248 (360)
..++.+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..++++.++|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 467789999999999999999986 789999999 888875421 468999999998
Q ss_pred C-C-C--CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCC
Q 018116 249 Q-Y-I--PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDG 324 (360)
Q Consensus 249 ~-~-~--p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g 324 (360)
. + . ..||+|+...++|++++++...++++++++|+| ||++++.....+..... +.
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp---gG~~~l~~~~~~~~~~~------------------gp 179 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK---KFQYLLCVLSYDPTKHP------------------GP 179 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTTCC------------------CS
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC---cceEEEEEcccCCCCCC------------------CC
Confidence 7 2 2 259999999999999999999999999999999 99888877665432211 01
Q ss_pred -cccCHHHHHHHHHHCCCceeEE
Q 018116 325 -KERTDEEWKTLFLDAGFTHYKI 346 (360)
Q Consensus 325 -~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
...+.+++.++|+. +|.+..+
T Consensus 180 p~~~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 180 PFYVPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp SCCCCHHHHHHHHTT-TEEEEEE
T ss_pred CCCCCHHHHHHHhcC-CCEEEEE
Confidence 12488999999965 6765444
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.52 E-value=5.2e-15 Score=107.15 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=76.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCc
Q 018116 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKE 96 (360)
Q Consensus 17 ~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 96 (360)
+....+++++.+++.+++|++|+++|||++|.. +|+|++|||+++|+ +++.+.|+||+|++.|++++.+++
T Consensus 6 ~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~--gp~t~~eLA~~~g~---~~~~l~rLlr~L~a~gll~~~~d~---- 76 (92)
T d1qzza1 6 QDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGEKQ---- 76 (92)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCCC-----
T ss_pred hhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC--CCCCHHHHHHHHCc---CchHHHHHHHHHHHCCCeeeecCC----
Confidence 456788999999999999999999999999986 89999999999999 579999999999999999998621
Q ss_pred ccceecchhhhhhhc
Q 018116 97 EEAYGLTAISALLIK 111 (360)
Q Consensus 97 ~~~y~~t~~~~~l~~ 111 (360)
.+.|++|+.|..|++
T Consensus 77 ~~~~~~t~~g~lL~d 91 (92)
T d1qzza1 77 GRPLRPTRLGMLLAD 91 (92)
T ss_dssp CCCCEECTTGGGGST
T ss_pred CceecccHHHHhccC
Confidence 346888999988764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=6e-15 Score=128.90 Aligned_cols=140 Identities=12% Similarity=0.062 Sum_probs=96.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCC---------------------------
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TEN--------------------------- 239 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~r--------------------------- 239 (360)
..++.+|||||||+|.++..++... ..+++++|+ +.+++.+++ ...
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 3467899999999999887666542 337999999 889887652 111
Q ss_pred ---e-EEEeCCCCC-----CCC--CccEEEeccccccCCh--hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchh
Q 018116 240 ---L-KYIAGDMFQ-----YIP--PADAYFFKLVFHAFGD--EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQ 306 (360)
Q Consensus 240 ---i-~~~~~D~~~-----~~p--~~D~i~~~~~lh~~~~--~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~ 306 (360)
+ .....+... +.+ .||+|++..++||++. ++...++++++++|+| ||++++.+..........
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp---GG~li~~~~~~~~~~~~~- 203 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPSYMVG- 203 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCEEEET-
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCC---CcEEEEEEecccccceec-
Confidence 1 112222211 222 5999999999999863 4677899999999999 999999887543321110
Q ss_pred hhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 307 VTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 307 ~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
+. .......+.++++++|++|||+++++...
T Consensus 204 --------~~----~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 204 --------KR----EFSCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp --------TE----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred --------cc----cccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 00 01123458999999999999998887544
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.49 E-value=4.3e-14 Score=123.21 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=85.0
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC--C
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YI--P 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~--p 252 (360)
.++..+. ++..+|||||||+|..+..+++.. ..+++|+|+ +.+++.|+. ..++.|..+|+.. +. .
T Consensus 16 ~lI~~~~---~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~ 91 (252)
T d1ri5a_ 16 CLIRLYT---KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLG 91 (252)
T ss_dssp HHHHHHC---CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCS
T ss_pred HHHHHhC---CCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccccc
Confidence 3455443 677899999999999999998873 347999999 999988753 4579999999976 32 2
Q ss_pred -CccEEEeccccccC--ChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 253 -PADAYFFKLVFHAF--GDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 253 -~~D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.||+|++..++||+ +.++..++|++++++|+| ||++++..
T Consensus 92 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~---gG~~i~~~ 134 (252)
T d1ri5a_ 92 KEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTV 134 (252)
T ss_dssp SCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ccceEEEEcceeeecCCCHHHHHHHHHHHhceeCC---CCEEEEEe
Confidence 49999999999997 446678899999999999 89887754
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.48 E-value=2.6e-14 Score=105.32 Aligned_cols=96 Identities=26% Similarity=0.376 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCC--CCCCHHHHHHHcCC-CCCCcccHHHHHHHHHhCCceeccccC-C
Q 018116 18 GHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHG--RPITLSELVSALKI-QPTKTSNLFRFMRLLVHMGLFSKTKVG-G 93 (360)
Q Consensus 18 ~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~--~~~t~~ela~~~~~-~p~~~~~l~~lL~~L~~~g~l~~~~~~-~ 93 (360)
+.-..++++++++.+++|++|++|||||+|.++| .++|..|||.+++. +|..+..+.|+||+|++.|+|...... +
T Consensus 7 ~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~~~~ 86 (107)
T d1kyza1 7 ANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQ 86 (107)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeeecCC
Confidence 3345678999999999999999999999998754 47899999999988 453356899999999999999765332 2
Q ss_pred CC-cccceecchhhhhhhcCC
Q 018116 94 EK-EEEAYGLTAISALLIKDK 113 (360)
Q Consensus 94 ~~-~~~~y~~t~~~~~l~~~~ 113 (360)
+| .+.+|.+||.+++|++|+
T Consensus 87 dg~~~~~Y~LTpvsk~Lv~de 107 (107)
T d1kyza1 87 DGKVQRLYGLATVAKYLVKNE 107 (107)
T ss_dssp TSCEEEEEEECHHHHHHSCCT
T ss_pred CCCeeeEEecchhHHhhcCCC
Confidence 22 234699999999998763
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=3.6e-14 Score=122.77 Aligned_cols=97 Identities=16% Similarity=0.277 Sum_probs=79.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEEe-ccccccCC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYFF-KLVFHAFG 267 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~-~~~lh~~~ 267 (360)
.....+|||||||+|.++..+++. +.+++++|+ +.+++.|++.....++.+|+.+ +++ .||+|++ ..++||++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence 456789999999999999999876 679999999 9999988763334467788876 554 5999997 46899998
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 268 DEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+.+ ++|++++++|+| ||.+++..+
T Consensus 118 d~~--~~l~~i~r~Lk~---gG~~ii~~~ 141 (246)
T d2avna1 118 NKD--KAFSEIRRVLVP---DGLLIATVD 141 (246)
T ss_dssp CHH--HHHHHHHHHEEE---EEEEEEEEE
T ss_pred hHH--HHHHHHHhhcCc---CcEEEEEEC
Confidence 864 689999999999 888887653
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.5e-13 Score=120.09 Aligned_cols=140 Identities=17% Similarity=0.158 Sum_probs=93.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHH----CCCC--eEEEeec-hHHHhcCCC-------CCCeEE--EeCCCC-------CC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEA----FPGI--KCTVLDL-PHAVANMPQ-------TENLKY--IAGDMF-------QY 250 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~----~p~~--~~~~~D~-~~~~~~a~~-------~~ri~~--~~~D~~-------~~ 250 (360)
++..+|||||||+|.++..+++. +++. +++++|. +.+++.+++ ...+.+ ...++. .+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 34458999999999987776654 5544 6799999 888876642 234444 343331 11
Q ss_pred C--CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh-hhc-ccCCcc
Q 018116 251 I--PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL-MSV-SVDGKE 326 (360)
Q Consensus 251 ~--p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~-~~~g~~ 326 (360)
. ..||+|++.+++||+++. .++|++++++|+| ||.++|.....+. . . ...+..+. ... ....+.
T Consensus 119 ~~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~Lkp---gG~l~i~~~~~~~---~--~--~~l~~~~~~~~~~~~~~~~ 186 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT---NAKMLIIVVSGSS---G--W--DKLWKKYGSRFPQDDLCQY 186 (280)
T ss_dssp SSCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEEEECTTS---H--H--HHHHHHHGGGSCCCTTSCC
T ss_pred CCCCceeEEEEccceecCCCH--HHHHHHHHhhCCC---CCEEEEEEecCcc---h--H--HHHHHHHHHhcCCCccccc
Confidence 2 259999999999999875 4789999999999 8988887553221 1 0 01111111 111 112445
Q ss_pred cCHHHHHHHHHHCCCceeE
Q 018116 327 RTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 327 ~t~~e~~~ll~~aGf~~~~ 345 (360)
.+.++|.++|++.||+...
T Consensus 187 ~~~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 187 ITSDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp CCHHHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHHCCCceEE
Confidence 6889999999999998543
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.47 E-value=4.3e-14 Score=104.46 Aligned_cols=97 Identities=25% Similarity=0.393 Sum_probs=78.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCC---CCHHHHHHHcCCCCCC---cccHHHHHHHHHhCCceeccc
Q 018116 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRP---ITLSELVSALKIQPTK---TSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 17 ~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~---~t~~ela~~~~~~p~~---~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..-..++++.+++..++|++|++|||||+|.+++++ +|+.|||+++.++|.+ +..|.|+||+|++.|+|++..
T Consensus 5 ~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~~~ 84 (110)
T d1fp1d1 5 SACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTT 84 (110)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCcccccc
Confidence 4556788999999999999999999999999876434 7999999999874333 346999999999999997654
Q ss_pred cC-CCC-cccceecchhhhhhhcCC
Q 018116 91 VG-GEK-EEEAYGLTAISALLIKDK 113 (360)
Q Consensus 91 ~~-~~~-~~~~y~~t~~~~~l~~~~ 113 (360)
.. ++| .+..|.+||.+++|++|+
T Consensus 85 ~~~~~g~~e~~Y~Ltpvsk~Lv~de 109 (110)
T d1fp1d1 85 RTIEDGGAERVYGLSMVGKYLVPDE 109 (110)
T ss_dssp EECTTSCEEEEEEECTTGGGGSTTC
T ss_pred ccCCCCCeeeEEecchhhHhhcCCC
Confidence 32 222 234699999999999875
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.4e-13 Score=120.66 Aligned_cols=140 Identities=14% Similarity=0.172 Sum_probs=97.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCC---------------------------
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TEN--------------------------- 239 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~r--------------------------- 239 (360)
..++.+|||||||+|.+....+.... .+++++|+ +.+++.+++ ...
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 45678999999999977654443332 37999999 888886642 111
Q ss_pred ----eEEEeCCCCCC-------C-C-CccEEEeccccccCCh--hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcc
Q 018116 240 ----LKYIAGDMFQY-------I-P-PADAYFFKLVFHAFGD--EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDK 304 (360)
Q Consensus 240 ----i~~~~~D~~~~-------~-p-~~D~i~~~~~lh~~~~--~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~ 304 (360)
......|+..+ . + .||+|++.++||+.+. ++..++|++++++||| ||.|++.+.........
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkP---GG~li~~~~~~~~~~~~ 207 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESWYLA 207 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCEEEE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCC---CCEEEEecccCCccccc
Confidence 12344566542 1 1 4999999999999863 4578899999999999 99999888764321111
Q ss_pred hhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 305 HQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 305 ~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.... ......+.++++++|+++||+++++...
T Consensus 208 ----------~~~~---~~~~~~t~e~v~~~l~~aGf~v~~~~~~ 239 (263)
T d2g72a1 208 ----------GEAR---LTVVPVSEEEVREALVRSGYKVRDLRTY 239 (263)
T ss_dssp ----------TTEE---EECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----------CCcc---cccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 0000 0122459999999999999998876533
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=1.5e-13 Score=120.66 Aligned_cols=93 Identities=15% Similarity=0.222 Sum_probs=81.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CccEEEeccccccCCh
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGD 268 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~ 268 (360)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++|..+|+.+ +++ .||+|++.+++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 4678999999999999999999999999999999 999998875 6889999999977 554 5999999888876
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
+++++|+|+| ||.+++..+..
T Consensus 160 ------~~e~~rvLkp---gG~l~~~~p~~ 180 (268)
T d1p91a_ 160 ------AEELARVVKP---GGWVITATPGP 180 (268)
T ss_dssp ------HHHHHHHEEE---EEEEEEEEECT
T ss_pred ------HHHHHHHhCC---CcEEEEEeeCC
Confidence 4678899999 99999987643
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.43 E-value=6.4e-13 Score=110.91 Aligned_cols=102 Identities=14% Similarity=0.280 Sum_probs=82.7
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCCC--C
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQYIP--P 253 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~~~p--~ 253 (360)
+++.+. ..+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..++++..+|+++..+ .
T Consensus 44 Li~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~ 119 (194)
T d1dusa_ 44 LVENVV--VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHhCC--cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCC
Confidence 445555 56789999999999999999998865 7899999 888887753 4579999999988544 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
||+|++..++|+. .+...++++++.+.|+| ||.+++.
T Consensus 120 fD~Ii~~~p~~~~-~~~~~~~l~~~~~~Lkp---gG~l~i~ 156 (194)
T d1dusa_ 120 YNKIITNPPIRAG-KEVLHRIIEEGKELLKD---NGEIWVV 156 (194)
T ss_dssp EEEEEECCCSTTC-HHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ceEEEEcccEEec-chhhhhHHHHHHHhcCc---CcEEEEE
Confidence 9999998877644 44457899999999999 8988774
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.43 E-value=4.7e-13 Score=112.80 Aligned_cols=142 Identities=9% Similarity=0.058 Sum_probs=99.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCC-CC--CccEE-Eecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQY-IP--PADAY-FFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~~-~p--~~D~i-~~~~~l 263 (360)
+.++.+|||||||+|..+..+++..|+.+++++|+ +.+++.+++ .+++.++.+|...+ .+ .+|.+ ++.+.+
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence 77899999999999999999999999889999999 999987764 67999999998773 22 23322 223345
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCce
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
+|..+ ...+++++++.|+| ||++++.+.........+ ... ...+..+.+ ++||++
T Consensus 134 ~~~~~--~~~~l~~~~~~Lkp---gG~l~i~~~~~~~d~~~~---~~~----------------~~~~~~~~l-~~gf~i 188 (209)
T d1nt2a_ 134 AQKNQ--IEILKANAEFFLKE---KGEVVIMVKARSIDSTAE---PEE----------------VFKSVLKEM-EGDFKI 188 (209)
T ss_dssp CSTTH--HHHHHHHHHHHEEE---EEEEEEEEEHHHHCTTSC---HHH----------------HHHHHHHHH-HTTSEE
T ss_pred cChhh--HHHHHHHHHHHhcc---CCeEEEEEEccccCCCCC---HHH----------------HHHHHHHHH-HcCCEE
Confidence 54444 35789999999999 999998775432221111 000 011122233 479999
Q ss_pred eEEEeeCC---ceeEEEEe
Q 018116 344 YKITNVFG---LKSLIEVY 359 (360)
Q Consensus 344 ~~~~~~~~---~~~vi~~~ 359 (360)
++...+.. .+.++.+|
T Consensus 189 ~E~i~L~P~~~~H~~v~~~ 207 (209)
T d1nt2a_ 189 VKHGSLMPYHRDHIFIHAY 207 (209)
T ss_dssp EEEEECTTTCTTEEEEEEE
T ss_pred EEEEccCCCccCcEEEEEE
Confidence 99988854 46676665
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.42 E-value=7e-13 Score=114.80 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=94.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCC--CCccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYI--PPADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~--p~~D~i~~~~~lh 264 (360)
..++.+|||+|||+|.+++.+++. +.+++++|+ +.+++.+++ .-++++..+|+.... ..||+|+++...+
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccc
Confidence 467899999999999999988765 579999999 999988874 446788899876633 3699999864433
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCcee
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHY 344 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 344 (360)
...++++.++++|+| ||++++.+.... ..+++.+.++++||+++
T Consensus 196 -----~l~~l~~~~~~~Lkp---GG~lilSgil~~----------------------------~~~~v~~~~~~~Gf~~~ 239 (254)
T d2nxca1 196 -----LHAALAPRYREALVP---GGRALLTGILKD----------------------------RAPLVREAMAGAGFRPL 239 (254)
T ss_dssp -----HHHHHHHHHHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEE
T ss_pred -----cHHHHHHHHHHhcCC---CcEEEEEecchh----------------------------hHHHHHHHHHHCCCEEE
Confidence 356788999999999 999998654310 24677888999999998
Q ss_pred EEEeeCC
Q 018116 345 KITNVFG 351 (360)
Q Consensus 345 ~~~~~~~ 351 (360)
+.....+
T Consensus 240 ~~~~~~~ 246 (254)
T d2nxca1 240 EEAAEGE 246 (254)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 8776644
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=2.1e-12 Score=114.72 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=75.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CC---CCcc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---YI---PPAD 255 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~~---p~~D 255 (360)
..+..+|||||||+|.++..|+++ +.+++++|+ +.|++.|++ ..+..+...|+.. +. ..||
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd 131 (292)
T d1xvaa_ 54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 131 (292)
T ss_dssp HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence 456789999999999999999987 679999999 999987753 1345566666643 12 2599
Q ss_pred EEEec-cccccCCh-----hHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 256 AYFFK-LVFHAFGD-----EDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 256 ~i~~~-~~lh~~~~-----~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+|++. ++++|+++ ++..++|++++++|+| ||.|++.
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~ 173 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVID 173 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCc---CcEEEEe
Confidence 99864 58888865 4577899999999999 8877663
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.29 E-value=2.2e-12 Score=106.77 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=81.1
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCC
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ---YIP 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~---~~p 252 (360)
.++..+. ..++.+|||||||+|.++..+++. ..+++++|. +.+++.+++ .++++++.+|+.+ +.+
T Consensus 24 ~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~ 99 (186)
T d1l3ia_ 24 LIMCLAE--PGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (186)
T ss_dssp HHHHHHC--CCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HHHHhcC--CCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccC
Confidence 3455555 678899999999999999999876 458999999 999988874 4799999999876 234
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.||+|++....++ ...+++.+.+.|+| ||++++..
T Consensus 100 ~~D~v~~~~~~~~-----~~~~~~~~~~~Lkp---gG~lvi~~ 134 (186)
T d1l3ia_ 100 DIDIAVVGGSGGE-----LQEILRIIKDKLKP---GGRIIVTA 134 (186)
T ss_dssp CEEEEEESCCTTC-----HHHHHHHHHHTEEE---EEEEEEEE
T ss_pred CcCEEEEeCcccc-----chHHHHHHHHHhCc---CCEEEEEe
Confidence 7999998776553 34679999999999 89888754
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.29 E-value=3.2e-12 Score=110.11 Aligned_cols=101 Identities=18% Similarity=0.135 Sum_probs=79.6
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP-- 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p-- 252 (360)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +++++.|++ ..++++..+|+.+..+
T Consensus 76 ~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~ 153 (250)
T d1yb2a1 76 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 153 (250)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccc
Confidence 3455566 788999999999999999999987 57889999999 888877663 5789999999987544
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.||.|++ +++++. .+|.+++++|+| ||++++..+
T Consensus 154 ~fD~V~l-----d~p~p~--~~l~~~~~~LKp---GG~lv~~~P 187 (250)
T d1yb2a1 154 MYDAVIA-----DIPDPW--NHVQKIASMMKP---GSVATFYLP 187 (250)
T ss_dssp CEEEEEE-----CCSCGG--GSHHHHHHTEEE---EEEEEEEES
T ss_pred eeeeeee-----cCCchH--HHHHHHHHhcCC---CceEEEEeC
Confidence 5999886 345543 569999999999 999987543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=6.7e-13 Score=113.76 Aligned_cols=96 Identities=13% Similarity=0.049 Sum_probs=74.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC---CCC--CccEEE----
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ---YIP--PADAYF---- 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~---~~p--~~D~i~---- 258 (360)
..+.+|||||||+|..+..+++..+ .+++++|+ +.+++.+++ ..++.++.+|... +.+ .||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 4568999999999999999988654 58999999 999988764 4667778777543 344 488876
Q ss_pred -eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 259 -FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 259 -~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
....++|+.+. ..++++++++|+| ||.+++.+
T Consensus 131 ~~~~~~~~~~~~--~~~~~~~~r~Lkp---GG~~~~~~ 163 (229)
T d1zx0a1 131 PLSEETWHTHQF--NFIKNHAFRLLKP---GGVLTYCN 163 (229)
T ss_dssp CCBGGGTTTHHH--HHHHHTHHHHEEE---EEEEEECC
T ss_pred ccccccccccCH--HHHHHHHHHHcCC---CcEEEEEe
Confidence 46666766654 5789999999999 88887643
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=2.1e-11 Score=106.22 Aligned_cols=134 Identities=18% Similarity=0.244 Sum_probs=101.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CccEEEeccc--
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP--PADAYFFKLV-- 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p--~~D~i~~~~~-- 262 (360)
....+|||+|||+|..++.++..+|+.+++++|+ +.+++.|++ ..+|+|+.+|++++.+ .||+|+++=-
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 4567899999999999999999999999999999 999988874 3589999999998655 5999998522
Q ss_pred -----------cccCCh----------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc
Q 018116 263 -----------FHAFGD----------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS 321 (360)
Q Consensus 263 -----------lh~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 321 (360)
+.+=|. +-..++++.+.+.|+| ||.+++ |.-.
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~---~G~l~l-Eig~----------------------- 239 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLL-EHGW----------------------- 239 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEE-ECCS-----------------------
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC---CCEEEE-EECc-----------------------
Confidence 111110 2245688999999999 777666 3210
Q ss_pred cCCcccCHHHHHHHHHHCCCceeE-EEeeCCceeEEEEe
Q 018116 322 VDGKERTDEEWKTLFLDAGFTHYK-ITNVFGLKSLIEVY 359 (360)
Q Consensus 322 ~~g~~~t~~e~~~ll~~aGf~~~~-~~~~~~~~~vi~~~ 359 (360)
...+.+.+++++.||+.++ ..++.+...++.++
T Consensus 240 -----~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 240 -----QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp -----SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred -----hHHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 1246778899999998655 56667777777664
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.28 E-value=6e-12 Score=109.05 Aligned_cols=104 Identities=11% Similarity=0.193 Sum_probs=86.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-C
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQ-Y 250 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~-~ 250 (360)
..++..++ ..++.+|||+|||+|.++..|++. .|+.+++++|. +++++.|++ .+++.+..+|+.+ +
T Consensus 86 s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 86 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 34566666 789999999999999999999997 68999999999 888888763 5799999999976 4
Q ss_pred CC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 251 IP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 251 ~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
++ .||.|++ |++++. .++.+++++|+| ||++++..++.
T Consensus 164 ~~~~~fDaV~l-----dlp~P~--~~l~~~~~~Lkp---GG~lv~~~P~i 203 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVA---GGVLMVYVATV 203 (264)
T ss_dssp CCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEEESSH
T ss_pred ccCCCcceEEE-----ecCCHH--HHHHHHHhccCC---CCEEEEEeCcc
Confidence 54 5999875 467764 569999999999 99998876543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.27 E-value=1.6e-11 Score=104.22 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=99.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCC--C----CCccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQY--I----PPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~~--~----p~~D~i~~~ 260 (360)
++++.+|||+|||+|.++..+++.. |+-+++++|+ +.+++.++. ..++..+..|...+ . +.+|++++
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~- 149 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE- 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence 6789999999999999999999975 7889999999 888876653 56788888887652 1 24676654
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
.+++.++ ...+++++++.|+| ||++++...........+ ......+..++ .+.|
T Consensus 150 -d~~~~~~--~~~~l~~~~~~Lkp---gG~lvi~~ka~~~~~~~~-------------------~~~v~~~v~~l-~~~g 203 (227)
T d1g8aa_ 150 -DVAQPTQ--AKILIDNAEVYLKR---GGYGMIAVKSRSIDVTKE-------------------PEQVFREVERE-LSEY 203 (227)
T ss_dssp -CCCSTTH--HHHHHHHHHHHEEE---EEEEEEEEEGGGTCTTSC-------------------HHHHHHHHHHH-HHTT
T ss_pred -Eccccch--HHHHHHHHHHhccc---CCeEEEEEECCccCCCCC-------------------HHHHHHHHHHH-HHcC
Confidence 3443333 45689999999999 999888654433222111 00011233344 4569
Q ss_pred CceeEEEeeCC---ceeEEEEeC
Q 018116 341 FTHYKITNVFG---LKSLIEVYP 360 (360)
Q Consensus 341 f~~~~~~~~~~---~~~vi~~~~ 360 (360)
|++++...+.. .+.++.++|
T Consensus 204 f~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 204 FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEEC
T ss_pred CEEEEEEcCCCCCCceEEEEEEe
Confidence 99999988855 478888886
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.27 E-value=1.2e-11 Score=103.48 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=78.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC--CccEEEecccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IP--PADAYFFKLVF 263 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p--~~D~i~~~~~l 263 (360)
...|||||||+|.++..+++.+|+..++|+|+ +.++..+.+ .+++.++.+|+.. . ++ .+|.|++.+..
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 45799999999999999999999999999999 877766542 5789999999865 1 44 59999887776
Q ss_pred ccCChhH------HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 264 HAFGDED------CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 264 h~~~~~~------~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+..... ...+|+.++++|+| ||.|+|..
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~Lkp---gG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCC---CcEEEEEE
Confidence 6544322 13689999999999 99998854
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=5.8e-12 Score=113.51 Aligned_cols=111 Identities=12% Similarity=0.050 Sum_probs=88.4
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEeCC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---------------TENLKYIAGD 246 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~ri~~~~~D 246 (360)
..+++.+. +.+..+|||||||+|.++..+++.++..+++|+|+ +.+++.|+. ..+|+|+++|
T Consensus 141 ~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 141 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 44566666 78889999999999999999999999889999999 888776642 4689999999
Q ss_pred CCC-CCC----CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 247 MFQ-YIP----PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 247 ~~~-~~p----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
+.+ ++. .+|+|++.+..| ++ +..+.|+++.+.||| ||++++.+...+..
T Consensus 219 ~~~~~~~~~~~~advi~~~~~~f-~~--~~~~~l~e~~r~LKp---Gg~iv~~~~~~~~~ 272 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNFAF-GP--EVDHQLKERFANMKE---GGRIVSSKPFAPLN 272 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCTTT-CH--HHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred ccccccccccCcceEEEEcceec-ch--HHHHHHHHHHHhCCC---CcEEEEecccCCCC
Confidence 987 332 478888766553 33 346789999999999 99999888765543
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.25 E-value=7.2e-12 Score=109.12 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=97.8
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC-
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p- 252 (360)
..++..++ ..++.+|||+|||+|.++..+++.. |+.+++++|. +++++.|++ .+++.+...|+...++
T Consensus 93 ~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 93 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 34566667 8899999999999999999999885 7899999999 999888764 4789999999866443
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHH
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEE 331 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e 331 (360)
.+|.|+ ++++++. ++|+++.++|+| ||+|++..++.. ..++
T Consensus 171 ~~~D~V~-----~d~p~p~--~~l~~~~~~LKp---GG~lv~~~P~~~----------------------------Qv~~ 212 (266)
T d1o54a_ 171 KDVDALF-----LDVPDPW--NYIDKCWEALKG---GGRFATVCPTTN----------------------------QVQE 212 (266)
T ss_dssp CSEEEEE-----ECCSCGG--GTHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHH
T ss_pred cceeeeE-----ecCCCHH--HHHHHHHhhcCC---CCEEEEEeCccc----------------------------HHHH
Confidence 488765 4667764 579999999999 999988653320 1235
Q ss_pred HHHHHHHCCCceeEEEe
Q 018116 332 WKTLFLDAGFTHYKITN 348 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~ 348 (360)
..+.+++.||..+++..
T Consensus 213 ~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 213 TLKKLQELPFIRIEVWE 229 (266)
T ss_dssp HHHHHHHSSEEEEEEEC
T ss_pred HHHHHHHCCceeEEEEE
Confidence 55777888998777654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.24 E-value=8.6e-12 Score=105.31 Aligned_cols=98 Identities=15% Similarity=0.311 Sum_probs=80.7
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP--- 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p--- 252 (360)
.+++.+. ..++.+|||||||+|..+..+++.. +..+++++|. +.+++.+++ ..++.++.+|..+..+
T Consensus 66 ~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 3455566 7889999999999999999999875 6789999999 888888764 5789999999876332
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.||+|++...+++++++ +.+.|+| ||+|++.
T Consensus 144 ~fD~I~~~~~~~~~p~~--------l~~~Lkp---GG~lv~p 174 (213)
T d1dl5a1 144 PYDVIFVTVGVDEVPET--------WFTQLKE---GGRVIVP 174 (213)
T ss_dssp CEEEEEECSBBSCCCHH--------HHHHEEE---EEEEEEE
T ss_pred chhhhhhhccHHHhHHH--------HHHhcCC---CcEEEEE
Confidence 59999999999988763 4566999 9998873
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.16 E-value=1e-10 Score=97.70 Aligned_cols=97 Identities=16% Similarity=0.279 Sum_probs=75.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC--CccEEEeccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ---YIP--PADAYFFKLV 262 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~---~~p--~~D~i~~~~~ 262 (360)
....|||||||+|.++..+++.+|+..++|+|+ +.++..+.+ ..++.++.+|+.. .++ .+|.|++.+.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 345799999999999999999999999999999 777776642 5789999999866 234 5888876553
Q ss_pred cccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 263 FHAFGDED-------CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 263 lh~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
-. |+... ...+|+.++++|+| ||.|++..
T Consensus 111 dP-w~K~~h~krRl~~~~~l~~~~~~Lkp---gG~l~i~T 146 (204)
T d1yzha1 111 DP-WPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 146 (204)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred cc-ccchhhhhhhhhHHHHHHHHHHhCCC---CcEEEEEE
Confidence 32 33221 14789999999999 99998753
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.16 E-value=4e-11 Score=109.87 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=85.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEE-EeC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---------------TENLKY-IAG 245 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~ri~~-~~~ 245 (360)
..+++.++ +.++.+|||||||+|.++..++..++..+++|+|+ +.+++.|+. ...+.+ ..+
T Consensus 206 ~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 206 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 45666676 78899999999999999999999999889999999 888887752 234454 355
Q ss_pred CCCCC------CCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 246 DMFQY------IPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 246 D~~~~------~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
++... ++.+|++++.+.+| . ++..+.|+++.+.||| ||+|++.+...+..
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~~f-~--~~l~~~L~ei~r~LKP---GGrIVs~~~~~~~~ 339 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKV---GCKIISLKSLRSLT 339 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred chhhccccccccccceEEEEecccC-c--hHHHHHHHHHHHhcCC---CcEEEEecccCCCc
Confidence 65542 24688998766443 2 3467889999999999 99999988766543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.3e-10 Score=98.66 Aligned_cols=99 Identities=14% Similarity=0.130 Sum_probs=78.6
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCC
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQYI 251 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~~ 251 (360)
+++.+....+++.+|||||||+|..+..+++. .|..+++++|+ +++++.+++ ..++.++.+|.....
T Consensus 66 ~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~ 145 (224)
T d1i1na_ 66 ALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY 145 (224)
T ss_dssp HHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc
Confidence 44444212578899999999999999888885 46889999999 888887753 478999999987733
Q ss_pred C---CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 252 P---PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 252 p---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+ .||+|++...+++.+++ +.+.|+| ||+|++.
T Consensus 146 ~~~~~fD~I~~~~~~~~ip~~--------l~~~Lkp---GG~LV~p 180 (224)
T d1i1na_ 146 AEEAPYDAIHVGAAAPVVPQA--------LIDQLKP---GGRLILP 180 (224)
T ss_dssp GGGCCEEEEEECSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred chhhhhhhhhhhcchhhcCHH--------HHhhcCC---CcEEEEE
Confidence 2 59999999999987753 5677999 9999884
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.03 E-value=2.8e-10 Score=96.09 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=77.4
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCCC---Ccc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQYIP---PAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~~~p---~~D 255 (360)
.+++.+. +.++.+|||||||+|+++..+++. ..+++++|. +..++.+++ ..+++++.+|.....+ .||
T Consensus 61 ~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD 136 (224)
T d1vbfa_ 61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (224)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhh--hcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence 3456666 788999999999999999888887 468999999 888876653 6899999999876433 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.|++...+++.++. +.+.|+| ||+|++.
T Consensus 137 ~Iiv~~a~~~ip~~--------l~~qLk~---GGrLV~p 164 (224)
T d1vbfa_ 137 RVVVWATAPTLLCK--------PYEQLKE---GGIMILP 164 (224)
T ss_dssp EEEESSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred HHHhhcchhhhhHH--------HHHhcCC---CCEEEEE
Confidence 99999998887753 4466999 9999874
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=3.3e-10 Score=100.95 Aligned_cols=104 Identities=15% Similarity=0.199 Sum_probs=82.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------------CCCeEEE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ-----------------TENLKYI 243 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~ri~~~ 243 (360)
..++..++ ..++.+|||+|||+|.++..|++. .|+.+++++|+ +++++.|++ .+++.+.
T Consensus 88 ~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 88 NMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 34566677 889999999999999999999987 58889999999 888776542 4789999
Q ss_pred eCCCCCC---CC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 244 AGDMFQY---IP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 244 ~~D~~~~---~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
.+|+... .+ .||.|++ +++++. .+|.+++++|+| ||+|+++-++.
T Consensus 166 ~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKp---GG~lv~~~P~i 215 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKH---GGVCAVYVVNI 215 (324)
T ss_dssp ESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEE---EEEEEEEESSH
T ss_pred ecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccC---CCEEEEEeCCH
Confidence 9998762 22 4999875 455543 469999999999 99999876554
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=4.5e-10 Score=100.49 Aligned_cols=95 Identities=16% Similarity=0.112 Sum_probs=73.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCC-------CCCCeEEEeCCCCC-CCC--CccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMP-------QTENLKYIAGDMFQ-YIP--PADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-------~~~ri~~~~~D~~~-~~p--~~D~i~~~~~l 263 (360)
.++++|||||||+|.++..+++.. ..+++++|..++...+. -.++|+++.+|+.+ +.+ .+|+|++..+.
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 110 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCcCEEEEEecCCcHHHHHHHHhC-CCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence 357899999999999999888763 34799999833333222 16889999999987 444 59999988777
Q ss_pred ccCChh-HHHHHHHHHHHhccCCCCCcEEE
Q 018116 264 HAFGDE-DCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 264 h~~~~~-~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
|++..+ ....++..+.++|+| ||+++
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp---~G~ii 137 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAP---DGLIF 137 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred eeeccHHHHHHHHHHHHhcCCC---CeEEE
Confidence 775543 567889999999999 88776
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.95 E-value=7.5e-10 Score=91.63 Aligned_cols=97 Identities=14% Similarity=0.217 Sum_probs=73.9
Q ss_pred CCCCEEEEeCCCCchH----HHHHHHHC----CCCeEEEeec-hHHHhcCCC----------------------------
Q 018116 194 EGLGSIVDVGGGNGGF----SKIISEAF----PGIKCTVLDL-PHAVANMPQ---------------------------- 236 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~----~~~l~~~~----p~~~~~~~D~-~~~~~~a~~---------------------------- 236 (360)
.+..+|+++|||+|.- ++.+.+.. ..+++++.|+ +.+++.|+.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 4567999999999973 33344332 2457999999 888876641
Q ss_pred ---------CCCeEEEeCCCCCC--C--CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 237 ---------TENLKYIAGDMFQY--I--PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 237 ---------~~ri~~~~~D~~~~--~--p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
...+.+...+...+ . .+||+|+|.++|++++++...+++++++++|+| ||.|++
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~p---GG~L~l 169 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 169 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 13456676776652 1 259999999999999999999999999999999 887776
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.94 E-value=9.8e-10 Score=98.77 Aligned_cols=95 Identities=13% Similarity=0.141 Sum_probs=73.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~~l 263 (360)
.++++|||||||+|.++..++++ ...+++++|..++++.+++ .+++.++.+|+.+ +.| .+|+|++..+.
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCcCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 35789999999999999877775 3458999999555554432 6789999999987 554 59999998777
Q ss_pred ccCCh-hHHHHHHHHHHHhccCCCCCcEEE
Q 018116 264 HAFGD-EDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 264 h~~~~-~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
++... .....++....++|+| ||.++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~Lkp---gG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVE---GGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred eeeccchhHHHHHHHHHhccCC---CeEEE
Confidence 76554 3456788888999999 78764
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=2.7e-09 Score=95.07 Aligned_cols=96 Identities=20% Similarity=0.139 Sum_probs=73.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC------CCCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP------QTENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
..++++|||||||+|.++..++++.+ .+++++|. +.+....+ ..+++.++.+|+.+ +.+ .+|+|++..+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 44678999999999999998888743 58999999 55432111 16889999999987 444 6999999888
Q ss_pred cccCChh-HHHHHHHHHHHhccCCCCCcEEE
Q 018116 263 FHAFGDE-DCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 263 lh~~~~~-~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
.|+...+ ....++....+.|+| ||+++
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp---~G~ii 139 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAK---GGSVY 139 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred eeecccccccHHHHHHHHhcCCC---CcEEe
Confidence 8776554 345667777889999 88776
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.84 E-value=1.1e-08 Score=88.23 Aligned_cols=120 Identities=14% Similarity=0.101 Sum_probs=88.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP--PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p--~~D~i~~~~~ 262 (360)
..++.+|||+|||+|.+++.+++. +..+++++|+ |.+++.+++ .++++++.+|..+-.+ .||.|++...
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 467899999999999999999987 4579999999 988887763 6789999999987332 5999987532
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCc
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 342 (360)
- ....+|..+.+.|++ ||.|.+.+.+..+.. .....+.+.++.++.||.
T Consensus 184 ~------~~~~~l~~a~~~l~~---gG~lh~~~~~~~~~~----------------------~~~~~e~~~~~~~~~g~~ 232 (260)
T d2frna1 184 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYD 232 (260)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCE
T ss_pred C------chHHHHHHHHhhcCC---CCEEEEEeccccccc----------------------hhhHHHHHHHHHHHcCCc
Confidence 1 123568888899999 887766554422210 112456677888899997
Q ss_pred ee
Q 018116 343 HY 344 (360)
Q Consensus 343 ~~ 344 (360)
+.
T Consensus 233 v~ 234 (260)
T d2frna1 233 VE 234 (260)
T ss_dssp EE
T ss_pred eE
Confidence 64
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.84 E-value=3.5e-09 Score=87.14 Aligned_cols=114 Identities=19% Similarity=0.281 Sum_probs=87.9
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC------
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ------ 249 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~------ 249 (360)
...+++.+. ..+...+||++||+|.++..+++++|+.+++++|. +.+++.+++ .+|+.++.+++.+
T Consensus 12 l~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 12 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 89 (192)
T ss_dssp HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence 456666666 67788999999999999999999999999999999 999988764 6799999999865
Q ss_pred C--CCCccEEEeccccc--cC-----ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 250 Y--IPPADAYFFKLVFH--AF-----GDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 250 ~--~p~~D~i~~~~~lh--~~-----~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
. ...+|.|++-.-+. .+ .-....+.|..+.++|+| ||+++++.....+
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~---gG~l~ii~f~s~E 146 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP---GGRIVVISFHSLE 146 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEE---EEEEEEEESSHHH
T ss_pred HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCC---CCeeeeeccccHH
Confidence 1 23689887643221 01 112345788999999999 9999998865433
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.84 E-value=3.2e-09 Score=88.94 Aligned_cols=97 Identities=23% Similarity=0.282 Sum_probs=77.9
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---C
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP---P 253 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p---~ 253 (360)
.+++.+. ..++.+|||||||+|+.+..+++.. +.+++++|. +++++.+++ .+++.++.+|.....+ .
T Consensus 69 ~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 69 IMLEIAN--LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhhc--cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 4455666 7889999999999999998888764 467999998 888887764 5899999999987433 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
||.|++...+.+.|+. +.+.|+| ||+|++.
T Consensus 146 fD~Iiv~~a~~~ip~~--------l~~qL~~---gGrLv~p 175 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIPEP--------LIEQLKI---GGKLIIP 175 (215)
T ss_dssp EEEEEECSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred ceeEEeecccccCCHH--------HHHhcCC---CCEEEEE
Confidence 9999999999877763 3456899 9998873
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.80 E-value=6.1e-09 Score=87.83 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=76.3
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC------CCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCC
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF------PGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGD 246 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~------p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D 246 (360)
+++.+...+.++.+|||||||+|+.+..+++.. +..+++++|. +++++.+++ ..++.+..+|
T Consensus 70 ~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d 149 (223)
T d1r18a_ 70 ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD 149 (223)
T ss_dssp HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecc
Confidence 444442126788999999999999998887753 4568999999 888877653 3689999999
Q ss_pred CCCCCC---CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 247 MFQYIP---PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 247 ~~~~~p---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.....+ .||.|++...+.+.|+. +.+.|+| ||++++.
T Consensus 150 ~~~~~~~~~~fD~Iiv~~a~~~~p~~--------l~~~Lk~---gG~lV~p 189 (223)
T d1r18a_ 150 GRKGYPPNAPYNAIHVGAAAPDTPTE--------LINQLAS---GGRLIVP 189 (223)
T ss_dssp GGGCCGGGCSEEEEEECSCBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred cccccccccceeeEEEEeechhchHH--------HHHhcCC---CcEEEEE
Confidence 877332 59999999999877752 4567999 9999774
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=1.1e-07 Score=81.49 Aligned_cols=72 Identities=13% Similarity=0.142 Sum_probs=58.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC----C-----CCccE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY----I-----PPADA 256 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~----~-----p~~D~ 256 (360)
....++||||||+|..+..+++++|+++++++|+ +.+++.|++ .+|+.+...+.... . ..||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 4567999999999999999999999999999999 999988874 68899887654431 1 14999
Q ss_pred EEecccccc
Q 018116 257 YFFKLVFHA 265 (360)
Q Consensus 257 i~~~~~lh~ 265 (360)
|+++=-.+.
T Consensus 140 ivsNPPY~~ 148 (250)
T d2h00a1 140 CMCNPPFFA 148 (250)
T ss_dssp EEECCCCC-
T ss_pred EEecCcccc
Confidence 998766653
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.62 E-value=4.1e-08 Score=84.79 Aligned_cols=66 Identities=15% Similarity=0.335 Sum_probs=55.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC----CCccEEEec
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYI----PPADAYFFK 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~----p~~D~i~~~ 260 (360)
.+..+++|+|||+|..+..+++ +|+.+++++|+ +.+++.|++ .+++.+..+|++++. ..||+|+++
T Consensus 109 ~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 4567899999999999999874 69999999999 999888764 578999999998853 259999985
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.50 E-value=8.4e-08 Score=78.80 Aligned_cols=66 Identities=20% Similarity=0.295 Sum_probs=54.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCCCccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQYIPPADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~~p~~D~i~~~~ 261 (360)
.+++|||+|||+|.+++.++... ..+++++|. +.+++.+++ ..+++++.+|+.+....||+|+++=
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~g-a~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NP 115 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNP 115 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcC-CCcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCc
Confidence 57899999999999988777653 348999999 889888876 6789999999866444699999853
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.46 E-value=8.8e-08 Score=75.68 Aligned_cols=95 Identities=11% Similarity=0.142 Sum_probs=68.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC----CCCccEEEeccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY----IPPADAYFFKLV 262 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~----~p~~D~i~~~~~ 262 (360)
.+.+|||+|||+|.+++..+.+.. .+++.+|. +.+++.+++ .++++++.+|..+. ...||+|++---
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 578999999999999998887744 38999999 888876543 57899999998662 236999987321
Q ss_pred cccCChhHHHHHHHHHH--HhccCCCCCcEEEEEeee
Q 018116 263 FHAFGDEDCLKILKKCR--EAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~--~~L~p~~~gG~lli~e~~ 297 (360)
+........|..+. ++|+| ||. +++|..
T Consensus 93 ---y~~~~~~~~l~~i~~~~~L~~---~g~-iiiE~~ 122 (152)
T d2esra1 93 ---YAKETIVATIEALAAKNLLSE---QVM-VVCETD 122 (152)
T ss_dssp ---SHHHHHHHHHHHHHHTTCEEE---EEE-EEEEEE
T ss_pred ---hccchHHHHHHHHHHCCCcCC---CeE-EEEEeC
Confidence 12334456666665 46888 555 455543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.37 E-value=2.6e-07 Score=82.21 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=73.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-------CCCccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-------IPPADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-------~p~~D~i 257 (360)
.+++.+|||+|||+|.++..++... ..+++++|+ +.+++.+++ .++++++.+|+++. ...||+|
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 3568899999999999999988773 348999999 888887764 46899999998762 1259999
Q ss_pred EeccccccCCh---h----HHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 258 FFKLVFHAFGD---E----DCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 258 ~~~~~lh~~~~---~----~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++.-.-.--.. . .-.++++.+.++|+| ||.|+...
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~p---GG~lv~~s 263 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCS 263 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEE
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEEe
Confidence 97322111111 1 124578888999999 88777755
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=3.4e-07 Score=76.55 Aligned_cols=96 Identities=11% Similarity=0.137 Sum_probs=73.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---------CCCc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---------IPPA 254 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---------~p~~ 254 (360)
..+.++|||||||+|.-+..+++..| +.+++.+|. +...+.|++ .++++++.+|..+. ...|
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 45689999999999999999999987 789999999 777666653 68999999997551 1259
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
|+|+.-. ..+.-...+..+.+.|+| ||.| ++|.+
T Consensus 137 D~ifiD~-----dk~~y~~~~~~~~~lL~~---GGvi-i~Dn~ 170 (219)
T d2avda1 137 DVAVVDA-----DKENCSAYYERCLQLLRP---GGIL-AVLRV 170 (219)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEEE---EEEE-EEECC
T ss_pred cEEEEeC-----CHHHHHHHHHHHHHHhcC---CcEE-EEeCC
Confidence 9998742 233446778899999999 5555 44444
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.32 E-value=1.3e-07 Score=79.02 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=71.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---------CCCcc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---------IPPAD 255 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---------~p~~D 255 (360)
..+++|||||||+|..+..+++..+ +.+++.+|. +...+.++. .++|+++.+|..+. ...||
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 4578999999999999999999875 689999999 888877653 57899999998652 12489
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
+|++-+ +.........+.+..+.|+| || ++|+|.+.
T Consensus 135 ~ifiD~---~~~~~~~~~~l~~~~~lLkp---GG-vIv~Ddvl 170 (214)
T d2cl5a1 135 MVFLDH---WKDRYLPDTLLLEKCGLLRK---GT-VLLADNVI 170 (214)
T ss_dssp EEEECS---CGGGHHHHHHHHHHTTCEEE---EE-EEEESCCC
T ss_pred eeeecc---cccccccHHHHHHHhCccCC---Cc-EEEEeCcC
Confidence 998642 11221222346677788999 55 56666544
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.31 E-value=8.1e-07 Score=73.32 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=54.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCCccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIPPADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p~~D~i~~~~~l 263 (360)
-.+.+|||+|||+|.+++.++.+ +..+++++|+ +.+++.+++ ..+.++..+|.......||+|++.=-.
T Consensus 45 l~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPF 119 (201)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCC
T ss_pred CCCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcc
Confidence 35689999999999999987765 3458999999 888877653 567899999986654579999985444
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.30 E-value=3.3e-07 Score=81.25 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=72.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC-------CCCccEEEe
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY-------IPPADAYFF 259 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~-------~p~~D~i~~ 259 (360)
..+.+|||++||+|.++.++++. ..+++++|. +.+++.+++ -++++++.+|.++. -..||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 45789999999999999998865 568999999 889888764 46799999998661 125999997
Q ss_pred ccccccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 260 KLVFHAFGD-------EDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 260 ~~~lh~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.---...+. ..-.++++.+.++|+| ||.|+...
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkp---GG~Lv~~s 261 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATAS 261 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence 422111111 1224688899999999 78776644
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.29 E-value=9.5e-07 Score=77.29 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=74.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCC-------CCCccE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQY-------IPPADA 256 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~~-------~p~~D~ 256 (360)
...+.+|||+.||+|.++..+++. +.+++.+|. +.+++.+++ ..+++|+++|+++. -..||+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 456789999999999999998876 679999999 888888764 35799999999762 125999
Q ss_pred EEec---cccc----cCC-hhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 257 YFFK---LVFH----AFG-DEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 257 i~~~---~~lh----~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
|++- +.-. .+. .+....+++.+.++|+| ||.+++...+.
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~---~g~~ll~t~~s 254 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTAYS 254 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEECC
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCC---CCCEEEEecCC
Confidence 9972 1110 111 12344567788889999 88777765543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.27 E-value=3.2e-07 Score=80.91 Aligned_cols=98 Identities=13% Similarity=0.161 Sum_probs=74.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCC---CC-CCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQ---YI-PPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~---~~-p~~D~i 257 (360)
+..++||.||+|.|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|... .. ..||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 5678999999999999999998878889999999 999886652 6799999999977 22 369999
Q ss_pred EeccccccCC----hh--HHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 258 FFKLVFHAFG----DE--DCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 258 ~~~~~lh~~~----~~--~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++-.. ..+. .. -..++++.+++.|+| ||.+++.-
T Consensus 156 i~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p---~Gvlv~~~ 195 (312)
T d1uira_ 156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQT 195 (312)
T ss_dssp EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EEeCC-CcccccchhhhhhhHHHHHHHHHhcCC---CceEEEec
Confidence 85321 1111 00 124689999999999 77666543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.22 E-value=6.8e-07 Score=71.81 Aligned_cols=94 Identities=13% Similarity=0.192 Sum_probs=60.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-----CCCCccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-----YIPPADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-----~~p~~D~i~~ 259 (360)
...+.+|||+|||+|.+++..+.+ +.+++++|. +.+++.+++ .+++.....|.+. ....||+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 456789999999999999988877 578999999 888887764 3445444444332 1235999987
Q ss_pred ccccccCChhHHHHHHHHH--HHhccCCCCCcEEEEEee
Q 018116 260 KLVFHAFGDEDCLKILKKC--REAIAGNGERGKVLIMDI 296 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~--~~~L~p~~~gG~lli~e~ 296 (360)
.=- ++.... +.+..+ ..+|+| ||. ++++.
T Consensus 117 DPP-Y~~~~~---~~l~~l~~~~ll~~---~g~-ivie~ 147 (171)
T d1ws6a1 117 APP-YAMDLA---ALFGELLASGLVEA---GGL-YVLQH 147 (171)
T ss_dssp CCC-TTSCTT---HHHHHHHHHTCEEE---EEE-EEEEE
T ss_pred ccc-cccCHH---HHHHHHHHcCCcCC---CeE-EEEEe
Confidence 322 122222 223333 356888 664 45554
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.13 E-value=2e-06 Score=72.94 Aligned_cols=89 Identities=12% Similarity=0.216 Sum_probs=69.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC-cc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIPP-AD 255 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p~-~D 255 (360)
..+++... ..+..+|||||||+|.++..|++. ..+++++|. +.+++.++. .++++++.+|+.+ +++. .+
T Consensus 19 ~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~ 94 (245)
T d1yuba_ 19 NQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHhcC--CCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence 44555555 677899999999999999999998 568999999 888877764 4789999999988 6663 44
Q ss_pred EEEeccccccCChhHHHHHH
Q 018116 256 AYFFKLVFHAFGDEDCLKIL 275 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L 275 (360)
..+..+.-++++.+-..+++
T Consensus 95 ~~vv~NLPY~Ist~il~~~l 114 (245)
T d1yuba_ 95 YKIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp EEEEEECCSSSCHHHHHHHH
T ss_pred eeEeeeeehhhhHHHHHHHh
Confidence 55667777888886444443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.12 E-value=5e-06 Score=68.46 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=71.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC---C---CCCeEEEeCCCCCC--CCCccEEEecccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP---Q---TENLKYIAGDMFQY--IPPADAYFFKLVFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---~~ri~~~~~D~~~~--~p~~D~i~~~~~lh~ 265 (360)
+..+++|||+|.|.-++-++-.+|+++++.+|. ..-+...+ . -+++++++.++.+. ...||+|+++.+-
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~-- 142 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA-- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence 457999999999999999999999999999997 43332222 1 56899999998773 3369999987653
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+ ...++.-+...+++ +|++++.-
T Consensus 143 -~---~~~ll~~~~~~l~~---~g~~~~~K 165 (207)
T d1jsxa_ 143 -S---LNDMVSWCHHLPGE---QGRFYALK 165 (207)
T ss_dssp -S---HHHHHHHHTTSEEE---EEEEEEEE
T ss_pred -C---HHHHHHHHHHhcCC---CcEEEEEC
Confidence 2 34678888888998 89888754
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.11 E-value=1.5e-06 Score=75.17 Aligned_cols=96 Identities=15% Similarity=0.220 Sum_probs=71.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------CCCeEEEeCCCCC---CCCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------------TENLKYIAGDMFQ---YIPP 253 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~ri~~~~~D~~~---~~p~ 253 (360)
...++||.||+|.|..+..+++ +|..+++++|+ |.+++.+++ .+|++++.+|... ....
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 5678999999999999999886 56679999999 999886642 5799999999865 2346
Q ss_pred ccEEEeccccccCChhH---HHHHHHHHHHhccCCCCCcEEEEE
Q 018116 254 ADAYFFKLVFHAFGDED---CLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~---~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
||+|++-. ........ -..+++.+++.|+| ||.+++.
T Consensus 150 yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~---~Gv~v~q 189 (276)
T d1mjfa_ 150 FDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ 189 (276)
T ss_dssp EEEEEEEC-CCCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCC---CceEEEe
Confidence 99998632 22222111 14689999999999 7766553
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.09 E-value=1.2e-06 Score=76.20 Aligned_cols=98 Identities=10% Similarity=0.104 Sum_probs=72.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC-CccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---YIP-PADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~~p-~~D~i~ 258 (360)
..+++||-||+|.|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+ ..+ .||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 4678999999999999999998777789999999 999887763 5899999999876 222 599998
Q ss_pred ecccccc-CChh--HHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 259 FKLVFHA-FGDE--DCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 259 ~~~~lh~-~~~~--~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+-..-.. -+.. --..+++.+++.|+| ||.+++.
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~---~Gi~v~q 203 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 203 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCC---CcEEEEe
Confidence 6321110 0000 024789999999999 7766553
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.08 E-value=1.4e-06 Score=73.08 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=73.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC----------CCC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY----------IPP 253 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~----------~p~ 253 (360)
..+.++||+||+++|.-+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+. ...
T Consensus 57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 35689999999999999999999987 689999999 776666553 67899999998652 125
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
||+|++-. ....-...++.+.+.|+| ||.|++-+
T Consensus 137 fD~iFiDa-----~k~~y~~~~e~~~~ll~~---gGiii~DN 170 (227)
T d1susa1 137 YDFIFVDA-----DKDNYLNYHKRLIDLVKV---GGVIGYDN 170 (227)
T ss_dssp BSEEEECS-----CSTTHHHHHHHHHHHBCT---TCCEEEET
T ss_pred eeEEEecc-----chhhhHHHHHHHHhhcCC---CcEEEEcc
Confidence 99998732 223456788899999999 66555433
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.05 E-value=2.1e-06 Score=74.11 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=72.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---C-CCCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---Y-IPPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~-~p~~D~i~ 258 (360)
..+++||-||+|.|..+..+++..+..+++.+|+ |.+++.+++ .+|++++.+|... . ...||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 4678999999999999999998777789999999 999887652 6899999999876 2 23599998
Q ss_pred eccccccCChh---HHHHHHHHHHHhccCCCCCcEEEE
Q 018116 259 FKLVFHAFGDE---DCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 259 ~~~~lh~~~~~---~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
+-.. ...... --..+++.+++.|+| ||.++.
T Consensus 154 ~D~~-~p~~~~~~L~t~eFy~~~~~~L~~---~Gv~v~ 187 (274)
T d1iy9a_ 154 VDST-EPVGPAVNLFTKGFYAGIAKALKE---DGIFVA 187 (274)
T ss_dssp ESCS-SCCSCCCCCSTTHHHHHHHHHEEE---EEEEEE
T ss_pred EcCC-CCCCcchhhccHHHHHHHHhhcCC---CceEEE
Confidence 6321 111100 024689999999999 776655
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.03 E-value=3.2e-06 Score=74.63 Aligned_cols=98 Identities=15% Similarity=0.195 Sum_probs=70.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCC------CC-CccE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQY------IP-PADA 256 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~~------~p-~~D~ 256 (360)
..++.+|||+.||+|.+++..+.. ...+++++|. +.+++.+++ ..+++++.+|+++. .. .||+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 456789999999999999887764 3347999999 877776653 46899999999762 12 5999
Q ss_pred EEecc--------ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 257 YFFKL--------VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 257 i~~~~--------~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
|++-= -++.. ..+-.++++.+.++|+| ||.|++..
T Consensus 221 Ii~DPP~f~~~~~~~~~~-~~~~~~L~~~a~~ll~p---gG~l~~~s 263 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSV-SKDYHKLIRQGLEILSE---NGLIIAST 263 (317)
T ss_dssp EEECCCCC-----CCCCH-HHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EEEcChhhccchhHHHHH-HHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence 99721 11110 11235689999999999 77766643
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=2.4e-06 Score=74.14 Aligned_cols=97 Identities=13% Similarity=0.194 Sum_probs=72.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CC-CCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---YI-PPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~~-p~~D~i~ 258 (360)
..+++||-||+|.|..+..+++..+..+++++|+ |.+++.+++ .+|++++.+|..+ .. ..||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 4678999999999999999998777889999999 999988763 6899999999876 22 3699998
Q ss_pred eccccccCChhH---HHHHHHHHHHhccCCCCCcEEEEE
Q 018116 259 FKLVFHAFGDED---CLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 259 ~~~~lh~~~~~~---~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+- ..+...... -..+++.+++.|+| ||.+++.
T Consensus 157 ~D-~~~p~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q 191 (285)
T d2o07a1 157 TD-SSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQ 191 (285)
T ss_dssp EE-CC-----------CHHHHHHHHHEEE---EEEEEEE
T ss_pred Ec-CCCCCCcccccccHHHHHHHHHhcCC---CCeEEEe
Confidence 73 222111111 12579999999999 7766554
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.00 E-value=5.1e-06 Score=69.99 Aligned_cols=82 Identities=15% Similarity=0.279 Sum_probs=61.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC----CCCCeEEEeCCCCC-CCCC-ccE
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP----QTENLKYIAGDMFQ-YIPP-ADA 256 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~ri~~~~~D~~~-~~p~-~D~ 256 (360)
.+++... ..+..+|||||||+|.++..|++. ..+++++|+ +.+++.++ ..++++++.+|+.+ +++. ...
T Consensus 12 ~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~ 87 (235)
T d1qama_ 12 KIMTNIR--LNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY 87 (235)
T ss_dssp HHHTTCC--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC
T ss_pred HHHHhcC--CCCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccc
Confidence 3444444 568899999999999999999998 458999999 77776554 36899999999988 5553 344
Q ss_pred EEeccccccCChh
Q 018116 257 YFFKLVFHAFGDE 269 (360)
Q Consensus 257 i~~~~~lh~~~~~ 269 (360)
.+..+.-++.+.+
T Consensus 88 ~vv~NLPYnIss~ 100 (235)
T d1qama_ 88 KIFGNIPYNISTD 100 (235)
T ss_dssp EEEEECCGGGHHH
T ss_pred eeeeeehhhhhHH
Confidence 4556766666654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.00 E-value=2.8e-06 Score=74.28 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=71.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---C-CCCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---Y-IPPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~-~p~~D~i~ 258 (360)
..+++||-||+|.|..+..+++..|-.+++.+|+ +.+++.+++ .+|++++.+|..+ . ...||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 4678999999999999999998766679999999 999886653 5899999999876 2 23699998
Q ss_pred eccccccCChh---HHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 259 FKLVFHAFGDE---DCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 259 ~~~~lh~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+-.. ...... -...+++.+++.|+| ||.++..
T Consensus 185 ~D~~-dp~~~~~~L~t~eFy~~~~~~L~~---~Gi~v~q 219 (312)
T d2b2ca1 185 TDSS-DPVGPAESLFGQSYYELLRDALKE---DGILSSQ 219 (312)
T ss_dssp ECCC--------------HHHHHHHHEEE---EEEEEEE
T ss_pred EcCC-CCCCcchhhhhHHHHHHHHhhcCC---CcEEEEe
Confidence 7321 111111 134679999999999 6766553
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.00 E-value=5.1e-06 Score=67.30 Aligned_cols=94 Identities=10% Similarity=0.155 Sum_probs=66.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--C--CCCccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ--Y--IPPADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~--~--~p~~D~i~~~~~l 263 (360)
...+|||++||+|.+++..+.+.. .+++.+|. +.+++.+++ ..+++++.+|+++ . ...||+|++-=-.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 457999999999999998888743 37999999 888876653 5678999999876 2 2259999984332
Q ss_pred ccCChhHHHHHHHHHHH--hccCCCCCcEEEEEee
Q 018116 264 HAFGDEDCLKILKKCRE--AIAGNGERGKVLIMDI 296 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~e~ 296 (360)
......+++..+.+ +|++ +| ++++|.
T Consensus 122 ---~~~~~~~~l~~l~~~~~L~~---~~-iIiiE~ 149 (183)
T d2fpoa1 122 ---RRGLLEETINLLEDNGWLAD---EA-LIYVES 149 (183)
T ss_dssp ---STTTHHHHHHHHHHTTCEEE---EE-EEEEEE
T ss_pred ---ccchHHHHHHHHHHCCCCCC---Ce-EEEEEe
Confidence 22234456666654 5888 44 555554
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.95 E-value=4.6e-06 Score=72.46 Aligned_cols=97 Identities=15% Similarity=0.200 Sum_probs=73.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC--CccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---YIP--PADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~~p--~~D~i 257 (360)
+..++||-||+|.|..+..+++..|-.+++.+|+ +.+++.+++ .+|++++.+|..+ ..+ .||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 4678999999999999999998767678999999 999887763 6899999999765 222 59999
Q ss_pred EeccccccCChh---HHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 258 FFKLVFHAFGDE---DCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 258 ~~~~~lh~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+.-.. ...... --..+++.+++.|+| ||.+++.
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q 194 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 194 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCC---CcEEEEe
Confidence 86321 111111 124689999999999 7766654
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.83 E-value=1.5e-05 Score=70.62 Aligned_cols=101 Identities=11% Similarity=0.161 Sum_probs=73.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-----CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCC--CCccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-----PGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYI--PPADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~--p~~D~i~~ 259 (360)
.....+|+|.+||+|.++..+.++. +..+++|+|+ +.++..|+. .....+..+|..... ..||+|++
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~ 194 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 194 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence 3456799999999999999887653 4557999999 888776653 567788888887643 36999998
Q ss_pred ccccccCChhH----------------HHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 260 KLVFHAFGDED----------------CLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 260 ~~~lh~~~~~~----------------~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.--.......+ -..++.++.+.|+| ||++.++-+
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~~I~p 244 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP 244 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCC---CCceEEEec
Confidence 65432211111 12368999999999 898877543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.82 E-value=4.4e-05 Score=61.31 Aligned_cols=110 Identities=22% Similarity=0.252 Sum_probs=81.2
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-C-------
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-Y------- 250 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~------- 250 (360)
..+++..+. ..++..++|..+|.|+++..++++ +.+++++|. |.+++.++. .+|+.++.+++.. .
T Consensus 7 l~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~ 82 (182)
T d1wg8a2 7 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 82 (182)
T ss_dssp HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcC
Confidence 355666665 678889999999999999999997 569999999 998877653 7899999998755 1
Q ss_pred CCCccEEEecccc-----ccCCh--hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 251 IPPADAYFFKLVF-----HAFGD--EDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 251 ~p~~D~i~~~~~l-----h~~~~--~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
...+|.|++-.-+ .+-.+ ......|......|+| ||+++++....
T Consensus 83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~---gg~~~ii~fhs 134 (182)
T d1wg8a2 83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAP---GGRLVVIAFHS 134 (182)
T ss_dssp CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEE---EEEEEEEECSH
T ss_pred CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCC---CCeEEEEeccc
Confidence 2358888773222 11111 1234578888999999 99999877643
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.81 E-value=7.8e-06 Score=55.70 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=50.3
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISAL 108 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 108 (360)
+.|++.+..++.|.|+.|||+.+|++ ..-+.|+|..|+..|++++++ +++|++++..-.
T Consensus 8 l~IL~~~a~~~~~~s~~eia~~~~~~---~st~~rll~tL~~~g~l~~~~------~g~y~lG~~l~~ 66 (75)
T d1mkma1 8 FEILDFIVKNPGDVSVSEIAEKFNMS---VSNAYKYMVVLEEKGFVLRKK------DKRYVPGYKLIE 66 (75)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCC---HHHHHHHHHHHHHTTSEEECT------TSCEEECTHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcC---HHHHHHHHHHHHHCCCEEECC------CCCEeecHHHHH
Confidence 45778887766799999999999994 689999999999999999986 588999886443
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.72 E-value=2.1e-05 Score=63.41 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=69.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-------CCCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-------IPPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-------~p~~D~i~ 258 (360)
..+.+|||+.||+|.++...+.+. ..+++.+|. +.+++.+++ .++++++.+|+++. ...||+|+
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srG-a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEcccccccccceeeecc-hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 357899999999999999888873 237999999 888776653 56899999998651 12599998
Q ss_pred eccccccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeeec
Q 018116 259 FKLVFHAFGDEDCLKILKKCRE--AIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~e~~~ 298 (360)
+-=-. .......+|..+.+ +|++ +| ++++|...
T Consensus 119 lDPPY---~~~~~~~~l~~i~~~~~L~~---~g-iIi~E~~~ 153 (182)
T d2fhpa1 119 LDPPY---AKQEIVSQLEKMLERQLLTN---EA-VIVCETDK 153 (182)
T ss_dssp ECCCG---GGCCHHHHHHHHHHTTCEEE---EE-EEEEEEET
T ss_pred echhh---hhhHHHHHHHHHHHCCCCCC---CE-EEEEEcCC
Confidence 73221 12234567777754 6888 55 56667543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.71 E-value=9e-05 Score=61.29 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=68.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC--CCCccEEEeccccccCC-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQTENLKYIAGDMFQY--IPPADAYFFKLVFHAFG- 267 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~--~p~~D~i~~~~~lh~~~- 267 (360)
...+.+|||.|||+|.++..+.++.+. .++.++|+ +..+..+ .+..++.+|.+.. ...||+++..-......
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---~~~~~~~~~~~~~~~~~~fd~ii~npP~~~~~~ 93 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNPPYGIVGE 93 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSC
T ss_pred CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---ccceeeeeehhccccccccceecccCccccccc
Confidence 456789999999999999998887664 57999999 6554443 3567788888763 23699998865432210
Q ss_pred --h------h------------------HHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 268 --D------E------------------DCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 268 --~------~------------------~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
. . -...++.++.+.|+| ||++.++-
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~---~G~~~~I~ 144 (223)
T d2ih2a1 94 ASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVV 144 (223)
T ss_dssp TTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhccc---CCceEEEE
Confidence 0 0 123567888899999 89987764
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=0.00025 Score=56.66 Aligned_cols=102 Identities=17% Similarity=0.291 Sum_probs=70.8
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC-C----------
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDLPHAVANMPQTENLKYIAGDMFQY-I---------- 251 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~-~---------- 251 (360)
++.++|. .+++..+|||+||+.|+++..+.+.. +..+++++|+..+ ..-+.+.++.+|+... .
T Consensus 12 EI~~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T d1ej0a_ 12 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HHHHHhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhhccC
Confidence 4455565 35788899999999999999988764 4578999998332 2367789999999762 1
Q ss_pred CCccEEEeccccccC---C-hh-----HHHHHHHHHHHhccCCCCCcEEEE
Q 018116 252 PPADAYFFKLVFHAF---G-DE-----DCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 252 p~~D~i~~~~~lh~~---~-~~-----~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
..+|+|++-....-- . |+ -+...|.-+.+.|++ ||.+++
T Consensus 87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~---gG~fV~ 134 (180)
T d1ej0a_ 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVV 134 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCC---CCcEEE
Confidence 249999874433211 1 11 133456677789999 787766
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.63 E-value=3.4e-05 Score=64.64 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=70.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhc---CCC---CCCeEEEeCCCCC-----CC-CCccEEEec
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVAN---MPQ---TENLKYIAGDMFQ-----YI-PPADAYFFK 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~---~~ri~~~~~D~~~-----~~-p~~D~i~~~ 260 (360)
....+++|||+|.|.-++-++=.+|+.+++.+|. ..=+.. +.. -.++.++...+.. +. ..||+|+++
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 4567999999999999999999999999999997 433322 221 5788888876643 11 359999998
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+- + ...++.-+...+++ ||++++.-
T Consensus 149 Ava---~---l~~ll~~~~~~l~~---~g~~i~~K 174 (239)
T d1xdza_ 149 AVA---R---LSVLSELCLPLVKK---NGLFVALK 174 (239)
T ss_dssp CCS---C---HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred hhh---C---HHHHHHHHhhhccc---CCEEEEEC
Confidence 653 2 35678888899999 88888754
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.46 E-value=0.00023 Score=59.29 Aligned_cols=96 Identities=17% Similarity=0.124 Sum_probs=64.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHH----CCCCeEEEeec-hHHHhcCC-CCCCeEEEeCCCCCC-----CC--CccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEA----FPGIKCTVLDL-PHAVANMP-QTENLKYIAGDMFQY-----IP--PADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~-~~~ri~~~~~D~~~~-----~p--~~D~i~~~~ 261 (360)
.+++|||||++.|.-+..++.. .++.+++++|+ +....... ...||+++.+|.... .. .+|+|++=
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID- 158 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFID- 158 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE-
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEc-
Confidence 4689999999999876655543 36789999998 54444333 268999999997652 12 47887653
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
.-|.... ...-+ .....|+| ||.++|-|.+
T Consensus 159 ~~H~~~~--v~~~~-~~~~lLk~---GG~iIveD~i 188 (232)
T d2bm8a1 159 NAHANTF--NIMKW-AVDHLLEE---GDYFIIEDMI 188 (232)
T ss_dssp SSCSSHH--HHHHH-HHHHTCCT---TCEEEECSCH
T ss_pred CCcchHH--HHHHH-HHhcccCc---CCEEEEEcCC
Confidence 3354322 22334 35678999 8888776653
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.45 E-value=0.00039 Score=57.71 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=66.4
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHh-c--CCC---CCCeEEEeCCCCCC-CC-Ccc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVA-N--MPQ---TENLKYIAGDMFQY-IP-PAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~-~--a~~---~~ri~~~~~D~~~~-~p-~~D 255 (360)
.+.+++- +.+..+|+|+|||.|+++..++.+.+..++.++++..-.. . ... .+-+++...+.... .+ .+|
T Consensus 57 ~~~~~~~--~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D 134 (257)
T d2p41a1 57 WFVERNL--VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCD 134 (257)
T ss_dssp HHHHTTS--SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHhcC--ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCC
Confidence 3444554 5677899999999999999999887666777777621111 1 111 24466766644332 23 599
Q ss_pred EEEeccccccCC----hhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 256 AYFFKLVFHAFG----DEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 256 ~i~~~~~lh~~~----~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
+|+|--.-+.-+ .+...++|.-+.++|+| ||.+++
T Consensus 135 ~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~---gg~Fvv 173 (257)
T d2p41a1 135 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV 173 (257)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred EEEeeCCCCCCCchhhhhhHHHHHHHHHHHccc---CCEEEE
Confidence 998754322111 12334678888899999 887655
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.00022 Score=61.00 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=57.6
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIPPA 254 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p~~ 254 (360)
.+++... ..+...|||||+|.|.++..|++.. .++++++. +..++..++ .++++++.+|+.+ +.|.+
T Consensus 12 kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~~ 87 (278)
T d1zq9a1 12 SIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF 87 (278)
T ss_dssp HHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCC
T ss_pred HHHHHhC--CCCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhhh
Confidence 3444444 5678899999999999999999984 58999988 776655432 3689999999988 56665
Q ss_pred cEEEeccccccCCh
Q 018116 255 DAYFFKLVFHAFGD 268 (360)
Q Consensus 255 D~i~~~~~lh~~~~ 268 (360)
+.++. +.=++.+.
T Consensus 88 ~~vV~-NLPY~Iss 100 (278)
T d1zq9a1 88 DTCVA-NLPYQISS 100 (278)
T ss_dssp SEEEE-ECCGGGHH
T ss_pred hhhhc-chHHHHHH
Confidence 55543 33333333
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.0027 Score=56.27 Aligned_cols=84 Identities=11% Similarity=0.157 Sum_probs=61.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC-------CCccEEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI-------PPADAYF 258 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~-------p~~D~i~ 258 (360)
..+..+|+|+-||+|.++..|++. ..+++++|. +++++.|+. ..+++|+.+|..+.. ..+|+|+
T Consensus 210 ~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi 287 (358)
T d1uwva2 210 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 287 (358)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred cCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence 456789999999999999999986 458999999 888887764 578999999987632 2489987
Q ss_pred eccccccCChhHHHHHHHHHHHhccC
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAG 284 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p 284 (360)
+- =|..=+.+.++.+.+. +|
T Consensus 288 lD-----PPR~G~~~~~~~l~~~-~~ 307 (358)
T d1uwva2 288 LD-----PARAGAAGVMQQIIKL-EP 307 (358)
T ss_dssp EC-----CCTTCCHHHHHHHHHH-CC
T ss_pred eC-----CCCccHHHHHHHHHHc-CC
Confidence 62 1222223456666553 56
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=97.13 E-value=0.0011 Score=57.29 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=73.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcC---------CCCCCeEEEeCCCCCCCC------C-----
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANM---------PQTENLKYIAGDMFQYIP------P----- 253 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a---------~~~~ri~~~~~D~~~~~p------~----- 253 (360)
.+...|+.+|||-=.....+ ...++++++=+|.|.+++.- ....+..++..|+..+++ +
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 45678888999988776665 33568899999998887631 125667888888865321 2
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
-=++++-.++++++.+++.++|+.+.+...| |+. +++|....
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~---GS~-l~~d~~~~ 208 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---GSR-IAVETSPL 208 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---TCE-EEEECCCT
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCC---CCE-EEEEeccc
Confidence 3346667789999999999999999999988 555 45555443
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.00015 Score=61.22 Aligned_cols=83 Identities=13% Similarity=0.110 Sum_probs=59.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC----
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP---- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p---- 252 (360)
+.+++... ..+...|||||||.|.++..|++. ..+++++|+ +..++..+. .++++++.+|+.+ +.+
T Consensus 11 ~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~~ 86 (252)
T d1qyra_ 11 DSIVSAIN--PQKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcC--CCCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhccccccc
Confidence 34445554 567889999999999999999987 457999999 777665533 5789999999987 332
Q ss_pred --CccEEEeccccccCChh
Q 018116 253 --PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 253 --~~D~i~~~~~lh~~~~~ 269 (360)
+--+.+..+.=++.+.+
T Consensus 87 ~~~~~~~vvgNlPY~Iss~ 105 (252)
T d1qyra_ 87 KMGQPLRVFGNLPYNISTP 105 (252)
T ss_dssp HHTSCEEEEEECCTTTHHH
T ss_pred ccCCCeEEEecchHHHHHH
Confidence 12245556666655553
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.76 E-value=0.0013 Score=52.57 Aligned_cols=96 Identities=15% Similarity=0.137 Sum_probs=64.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC----C--CCCccEEEe
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQ----Y--IPPADAYFF 259 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~----~--~p~~D~i~~ 259 (360)
...+|||+-||+|.++...+.+- ..+++.+|. ..+++.+++ .....+...|..+ . .+.||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRG-A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeeec-ceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 45799999999999999999874 338999999 777654442 3456777776543 1 225999987
Q ss_pred ccccccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeeec
Q 018116 260 KLVFHAFGDEDCLKILKKCRE--AIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~e~~~ 298 (360)
-=- +.. ....++|..+.. +|++ +.++++|...
T Consensus 122 DPP-Y~~--~~~~~~l~~l~~~~~L~~----~~liiiE~~~ 155 (183)
T d2ifta1 122 DPP-FHF--NLAEQAISLLCENNWLKP----NALIYVETEK 155 (183)
T ss_dssp CCC-SSS--CHHHHHHHHHHHTTCEEE----EEEEEEEEES
T ss_pred chh-Hhh--hhHHHHHHHHHHhCCcCC----CcEEEEEecC
Confidence 322 111 234566777764 6888 5566667543
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.66 E-value=0.023 Score=49.70 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=90.8
Q ss_pred CCCEEEEeCCCCchHHH-------HHH-HH--------CCCCeEEEeechH-----HHhcCCC---C-C--CeEEEeCCC
Q 018116 195 GLGSIVDVGGGNGGFSK-------IIS-EA--------FPGIKCTVLDLPH-----AVANMPQ---T-E--NLKYIAGDM 247 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~-------~l~-~~--------~p~~~~~~~D~~~-----~~~~a~~---~-~--ri~~~~~D~ 247 (360)
+.-+|+|+||.+|..+. ... +. -|..++..-|+|. ....... . . -+.-+.|.|
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 34689999999998773 222 21 2566788888853 2333322 1 1 244467888
Q ss_pred CCC-CC--CccEEEeccccccCCh-------------------------------hHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 248 FQY-IP--PADAYFFKLVFHAFGD-------------------------------EDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 248 ~~~-~p--~~D~i~~~~~lh~~~~-------------------------------~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
+.. +| ..+++++++.+|+++. .+...+|+.=++=|.| ||++++
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~---GG~mvl 207 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMVL 207 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEEE
T ss_pred hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcEEEE
Confidence 883 55 5999999999998752 1233477766777899 999999
Q ss_pred EeeecCCCCcchh----h-h-hHhHhhhhhhhccc----------CCcccCHHHHHHHHHHCC-CceeEE
Q 018116 294 MDIVINEKEDKHQ----V-T-EAKLLGDTLMSVSV----------DGKERTDEEWKTLFLDAG-FTHYKI 346 (360)
Q Consensus 294 ~e~~~~~~~~~~~----~-~-~~~~~~d~~~~~~~----------~g~~~t~~e~~~ll~~aG-f~~~~~ 346 (360)
.-..+++...... . . -...+.++...... .-..++.+|+++.+++.| |.+.++
T Consensus 208 ~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~ 277 (359)
T d1m6ex_ 208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence 8887765432210 0 0 01122222211111 112358999999999886 444443
|
| >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Metal-sensing transcriptional repressor CzrA species: Staphylococcus aureus [TaxId: 1280]
Probab=96.57 E-value=0.00054 Score=48.32 Aligned_cols=65 Identities=15% Similarity=0.259 Sum_probs=52.8
Q ss_pred HHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 32 AMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 32 ~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
+++|.--.++.|+..|.. ++.++.||++.+|+ +...+.+.|+.|...|+|..... |..-.|+++.
T Consensus 12 fkaL~d~~Rl~Il~~L~~--~~~~v~el~~~l~~---s~~~vS~HL~~L~~~glv~~~r~---G~~~~Y~l~~ 76 (94)
T d1r1ua_ 12 FKALGDYNRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKRQ---GQSMIYSLDD 76 (94)
T ss_dssp HHHTCSHHHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEESS
T ss_pred HHHhCCHHHHHHHHHHHc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCceEEEEE---CCEEEEEECc
Confidence 356666678889999987 79999999999999 57999999999999999988763 1123488764
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.53 E-value=0.0021 Score=58.49 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=73.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCC-------------CCeEEEeec-hHHHhcCC--------CCCCe
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFP-------------GIKCTVLDL-PHAVANMP--------QTENL 240 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~--------~~~ri 240 (360)
+.+++.+. .....+|+|-.||+|.++....+... .....|+|. +.+...++ .....
T Consensus 152 ~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 152 QAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred Hhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 33444443 34578999999999999988877532 234889998 76665543 14567
Q ss_pred EEEeCCCCCCCC--CccEEEeccccccCC---------------hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 241 KYIAGDMFQYIP--PADAYFFKLVFHAFG---------------DEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 241 ~~~~~D~~~~~p--~~D~i~~~~~lh~~~---------------~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
++..+|.....+ .||+|+++=-+..-. ...-..++.++.+.|++ ||++.++-+
T Consensus 230 ~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~iI~p 299 (425)
T d2okca1 230 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 299 (425)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred eeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCC---CCeEEEEec
Confidence 788888887433 599999855442110 01124589999999999 898877543
|
| >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Hypothetical protein PH1061 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.52 E-value=0.00057 Score=48.84 Aligned_cols=73 Identities=23% Similarity=0.294 Sum_probs=54.7
Q ss_pred HHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 34 SLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 34 ~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++..-.++.|+..|... ++.|+.|||+.+++ +...+.+.|+.|...|++++.....++-.-.|++|+.|....
T Consensus 12 ~l~~p~r~~IL~~L~~~-~~~~~~eLa~~l~i---s~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~ 84 (100)
T d1ub9a_ 12 ILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEA 84 (100)
T ss_dssp HHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred hcCCHHHHHHHHHhccC-CCeeHHHHHHHHhh---ccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHHHH
Confidence 33344467788888653 79999999999999 579999999999999999876421111122499999987443
|
| >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Biotin repressor, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.0012 Score=42.59 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=44.3
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
.++.|+..|.+ ++.+|.+|||+.+|+ +...+.+-++.|...|+.-.... +.+|+++
T Consensus 6 ~~~~iL~~L~~-~~~~s~~eLa~~l~v---S~~ti~r~i~~L~~~G~~I~~~~-----g~GY~L~ 61 (63)
T d1biaa1 6 VPLKLIALLAN-GEFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP-----GKGYSLP 61 (63)
T ss_dssp HHHHHHHHHTT-SSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET-----TTEEECS
T ss_pred HHHHHHHHHHH-CCcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCcEEEeC-----CCeEEeC
Confidence 35677888876 478999999999999 67999999999999998444331 3468875
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.43 E-value=0.058 Score=46.62 Aligned_cols=148 Identities=9% Similarity=0.104 Sum_probs=100.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCC---------------------------CCCCeEEEeCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMP---------------------------QTENLKYIAGD 246 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------------------------~~~ri~~~~~D 246 (360)
.+...|+-+|||.=.....+...+|+++++=+|.|++++.=+ ..++..++..|
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 345689999999999898998889999999999987765110 15788999999
Q ss_pred CCCC-C----------CC-ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhh
Q 018116 247 MFQY-I----------PP-ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLG 314 (360)
Q Consensus 247 ~~~~-~----------p~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~ 314 (360)
+.+. . ++ .-++++-.+|.+++.+++.++|+.+.+..+. +.+++.|++.+..+.+. +... +..
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~----~~~i~YE~i~~~~p~D~-FG~~-M~~ 248 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH----GLWISYDPIGGSQPNDR-FGAI-MQS 248 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCCCSTTCC-HHHH-HHH
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC----ceEEEeccCCCCCCCCh-HHHH-HHH
Confidence 9761 1 11 3368888899999999999999999998865 88999999975433321 2211 111
Q ss_pred hhh-hhcc-cC--CcccCHHHHHHHHHHCCCceeEEEee
Q 018116 315 DTL-MSVS-VD--GKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 315 d~~-~~~~-~~--g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.+. .... .. ....|.+...+-+ .||..+....+
T Consensus 249 nl~~~r~~~l~~~~~~~t~~~~~~r~--~~~~~~~~~dm 285 (328)
T d1rjda_ 249 NLKESRNLEMPTLMTYNSKEKYASRW--SAAPNVIVNDM 285 (328)
T ss_dssp HHHHHHCCCCTTTTTTCSHHHHHGGG--TTSSEEEEEEH
T ss_pred HHHHhcCCCCCccccCCCHHHHHHHH--hcCCccchhhH
Confidence 111 1110 11 2234666666655 37776666554
|
| >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: SmtB repressor species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]
Probab=96.41 E-value=0.001 Score=47.23 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=52.1
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
++|.--.++.|+..|.. ++.++.|||+.+|+ +...+...|+.|...|+|..... |..-.|++++
T Consensus 18 kaL~~p~Rl~Il~~L~~--~~~~v~ela~~l~i---s~stvS~HL~~L~~aglV~~~r~---G~~~~Y~l~~ 81 (98)
T d1r1ta_ 18 AVLADPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRKQ---GRHVYYQLQD 81 (98)
T ss_dssp HHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEESS
T ss_pred HHhCCHHHHHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEE---CCEEEEEECh
Confidence 56666778889999975 79999999999999 57999999999999999988763 1123477664
|
| >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Cadmium efflux system accessory protein CadC species: Staphylococcus aureus [TaxId: 1280]
Probab=96.27 E-value=0.0013 Score=47.49 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 31 SAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 31 ~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
.+++|.--.++.|+..|... ++.++.|||+.+|+ +...+.+.|+.|...|++..... |..-.|++++.
T Consensus 24 ~~kaLadp~Rl~Il~~L~~~-~~~~v~ela~~l~~---s~s~vS~HL~~L~~aGlv~~~r~---G~~~~Y~l~~~ 91 (108)
T d1u2wa1 24 ILKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRKE---GKLALYSLGDE 91 (108)
T ss_dssp HHHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-------CCEEEESCH
T ss_pred HHHHhCCHHHHHHHHHHHhC-CCccHHHHHHHHcc---ChhHHHHHHHHHHHCCeeEEEEE---CCEEEEEECHH
Confidence 34677777789999988653 79999999999999 57999999999999999988863 22345887654
|
| >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Putative transcriptional regulator TM1602, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.22 E-value=0.0027 Score=41.24 Aligned_cols=60 Identities=17% Similarity=0.290 Sum_probs=46.9
Q ss_pred HHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCc-eeccccCCCCcccceecch
Q 018116 35 LKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGL-FSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 35 L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~~~y~~t~ 104 (360)
++.--...|++.|..+.+++|.++||+.+++ +.+-+.|-+..|.+.|+ +... .+.|.+.+
T Consensus 4 ~k~eR~~~Il~~L~~~~~~vs~~~La~~l~V---S~~TI~rdi~~L~~~G~~I~~~-------~gGY~L~~ 64 (65)
T d1j5ya1 4 VRQERLKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVAT-------PRGYVLAG 64 (65)
T ss_dssp HHHHHHHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEE-------TTEEECCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEEe-------CCCEEeCC
Confidence 3444456778888664468999999999999 67999999999999997 5554 36898754
|
| >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Transcriptional regulator VC2007 N-terminal domain species: Vibrio cholerae [TaxId: 666]
Probab=95.73 E-value=0.0037 Score=41.32 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=40.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|... +++|..|||+.+|+ +...+.++++.|...|++.+.+
T Consensus 8 ~~~Il~~l~~~-g~~sr~eLa~~~gl---S~~Tv~~~l~~L~~~Glv~e~~ 54 (71)
T d1z05a1 8 AGRVYKLIDQK-GPISRIDLSKESEL---APASITKITRELIDAHLIHETT 54 (71)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 44677888764 79999999999999 5699999999999999998764
|
| >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator YusO species: Bacillus subtilis [TaxId: 1423]
Probab=95.72 E-value=0.0098 Score=44.95 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=52.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|+.+||+.+++ +...+.+.++.|...|++++....+|+-.-.+.+|+.|..+..
T Consensus 37 q~~iL~~l~~~-~~~t~~~la~~~~i---~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~~ 104 (143)
T d1s3ja_ 37 QLFVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 104 (143)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHHH
Confidence 34466677654 68999999999999 5799999999999999999876322221124999999986654
|
| >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator TM0816 species: Thermotoga maritima [TaxId: 2336]
Probab=95.61 E-value=0.0038 Score=47.20 Aligned_cols=69 Identities=17% Similarity=0.114 Sum_probs=54.2
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++.++..|... ++.|+.+||+.+++ +...+.+.++.|.+.|++++.....|+-.-..++|+.|..+..
T Consensus 33 ~q~~iL~~l~~~-~~~t~~~La~~l~i---~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~ 101 (140)
T d2etha1 33 TELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG 101 (140)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHHH
Confidence 356677778764 78999999999999 6799999999999999999876422222235899999886553
|
| >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Ta1064 (RFK), N-terminal domain species: Thermoplasma acidophilum [TaxId: 2303]
Probab=95.48 E-value=0.0045 Score=42.48 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+++|..|||+.+++ ++..+.++|+.|...|++.+..+ +-.-.|.+|+.|..+.
T Consensus 20 ~~lt~~eLa~~l~i---~~~~vs~~l~~Le~~GlV~r~~D---~R~~~i~LT~~G~~~l 72 (85)
T d3ctaa1 20 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVT---KRGQILNITEKGLDVL 72 (85)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeecc---cccccceECHHHHHHH
Confidence 68999999999999 56999999999999999999752 1123488999988554
|
| >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Hypothetical protein PH1932 domain: Hypothetical protein PH1932 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.46 E-value=0.0046 Score=49.40 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccC-CCC-cccceecchhh
Q 018116 31 SAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVG-GEK-EEEAYGLTAIS 106 (360)
Q Consensus 31 ~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~-~~~-~~~~y~~t~~~ 106 (360)
...+|.--.+..|+..|.. +|.|+.|||+.+|+ ++..+.+.|+.|...|+|+..... ..| ....|++|..+
T Consensus 12 ~~~~l~~p~R~~Il~~L~~--~~~s~~ela~~lg~---s~~~v~~hl~~L~~~glv~~~~~~~~~g~~~k~y~~~~~~ 84 (190)
T d1ulya_ 12 VIKVMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADV 84 (190)
T ss_dssp HHHHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSE
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEeeccCCcceEEEEEcccc
Confidence 4566777778899999975 89999999999999 568999999999999999754321 000 01237777654
|
| >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA3067 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.44 E-value=0.008 Score=45.63 Aligned_cols=69 Identities=23% Similarity=0.264 Sum_probs=51.4
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...++++|..+||+.+++ +...+.++++-|...|+|++....+|+-.-.+.+|+.|..+..
T Consensus 36 q~~vL~~L~~~~g~~t~~~La~~~~~---~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~~ 104 (145)
T d2hr3a1 36 QLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLY 104 (145)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHHH
Confidence 56666667554468999999999999 5799999999999999999876322221234999999986653
|
| >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: MexR repressor species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.37 E-value=0.022 Score=42.88 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=53.0
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++.++..|... ++.|..+||+.+++ +...+.++++.|+..|++++....+|+-.-.+.+|+.|..+..
T Consensus 37 ~q~~vL~~l~~~-~~~t~~~la~~l~~---~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~~ 105 (141)
T d1lnwa_ 37 PDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHQ 105 (141)
T ss_dssp HHHHHHHHHHSS-TTCBHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCc---cHhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHHHH
Confidence 356666777653 67999999999999 6799999999999999999876433222234899999885543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.37 E-value=0.022 Score=44.16 Aligned_cols=83 Identities=16% Similarity=0.089 Sum_probs=59.1
Q ss_pred CEEEEeCCCC--chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCCccEEEeccccccCChhHHH
Q 018116 197 GSIVDVGGGN--GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIPPADAYFFKLVFHAFGDEDCL 272 (360)
Q Consensus 197 ~~iLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p~~D~i~~~~~lh~~~~~~~~ 272 (360)
++|+=||||. |.++..|.+..+..+++++|. ++.++.+.+...+.....+... .....|+|++.- |.+...
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~ 76 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFR 76 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-----CHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC-----Cchhhh
Confidence 3688899984 346667777777889999999 8888877654444433333322 233689988753 666788
Q ss_pred HHHHHHHHhccC
Q 018116 273 KILKKCREAIAG 284 (360)
Q Consensus 273 ~~L~~~~~~L~p 284 (360)
.++.++...+++
T Consensus 77 ~vl~~l~~~~~~ 88 (171)
T d2g5ca2 77 EIAKKLSYILSE 88 (171)
T ss_dssp HHHHHHHHHSCT
T ss_pred hhhhhhhccccc
Confidence 899999999988
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.34 E-value=0.022 Score=49.36 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=43.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC---CCCCeEEEeCCCCC
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP---QTENLKYIAGDMFQ 249 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~~ri~~~~~D~~~ 249 (360)
...+|||||.|.|.++..|++...--++++++. +...+..+ ..++++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 467899999999999999998743348999998 66555443 26789999999874
|
| >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=95.32 E-value=0.0057 Score=39.14 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=39.6
Q ss_pred CcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 42 GIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 42 ~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+|+..|.+ +|+|-.|||+.+|+ +...+.++++.|...|++.+.+
T Consensus 3 ~Il~~i~~--~pisr~eLa~~~gl---s~~TVs~~v~~L~~~GlV~e~~ 46 (62)
T d2hoea1 3 RILKRIMK--SPVSRVELAEELGL---TKTTVGEIAKIFLEKGIVVEEK 46 (62)
T ss_dssp CSHHHHHH--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHH--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC
Confidence 57788876 79999999999999 5689999999999999999875
|
| >d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal fragment of elongation factor SelB domain: C-terminal fragment of elongation factor SelB species: Moorella thermoacetica [TaxId: 1525]
Probab=95.22 E-value=0.0078 Score=38.73 Aligned_cols=41 Identities=24% Similarity=0.480 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCccccee
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYG 101 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~ 101 (360)
.|-++.|||+.+|+ ++..++.+|+.|+..|.+.+.. ++.|-
T Consensus 22 ~PP~vrdl~~~l~~---~e~~~~~lL~~l~~~G~lvkI~------~d~yf 62 (64)
T d1lvaa3 22 QPPSFKEVAGSFNL---DPSELEELLHYLVREGVLVKIN------DEFYW 62 (64)
T ss_dssp SCCBHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEESS------SSBEE
T ss_pred CCCcHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec------ccccc
Confidence 69999999999999 6799999999999999999987 46664
|
| >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein ywnA species: Bacillus subtilis [TaxId: 1423]
Probab=95.13 E-value=0.01 Score=43.98 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=45.8
Q ss_pred chhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcCCCCChhhhhhh
Q 018116 44 ADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSG 123 (360)
Q Consensus 44 f~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~ 123 (360)
+-.|+. +++.|.++||+.++++ +..++++|+.|...|+++-.. |-+|.| ++.....+ ++.+++..
T Consensus 10 L~~la~-~~~~ss~~IA~~~~~~---~~~v~kIl~~L~~aglV~s~r----G~~GGy-Lar~p~~I------tl~dI~~a 74 (127)
T d1xd7a_ 10 LSLISM-DEKTSSEIIADSVNTN---PVVVRRMISLLKKADILTSRA----GVPGAS-LKKDPADI------SLLEVYRA 74 (127)
T ss_dssp HHHHHT-CSCCCHHHHHHHHTSC---HHHHHHHHHHHHHTTSEECCS----SSSSCE-ESSCGGGC------BHHHHHHH
T ss_pred HHHHhc-CCCCCHHHHHHHhCcC---HHHHHHHHHHHHHhCcccccC----CCCCcc-ccCCHHhC------cHHHHHHH
Confidence 344444 3689999999999994 589999999999999998765 223446 75443322 45555544
|
| >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PF1790-like domain: Transcriptional regulatory protein PF1790 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.05 E-value=0.0063 Score=48.79 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=53.2
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccC-CCC-cccceecchhhhhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVG-GEK-EEEAYGLTAISALL 109 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~-~~~-~~~~y~~t~~~~~l 109 (360)
.+|.--.+..|+..|.. +|.|+.|||+.+|+ ++..+.+.|+.|...|+|+..... ..| -...|+++..+...
T Consensus 10 ~~l~~~~R~~Il~~L~~--~~~~~~ela~~l~~---s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~~~ 83 (194)
T d2p4wa1 10 DVLGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLRLE 83 (194)
T ss_dssp HHHHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEEEE
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccceee
Confidence 44555557778888876 79999999999999 568999999999999999864321 001 01258888876533
|
| >d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Archaeal DNA-binding protein domain: Sso10a (SSO10449) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.89 E-value=0.012 Score=40.51 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.+...|...+++ +...+...|+.|...|++++. ++.|.+|+.|..+.
T Consensus 17 ~g~~kT~i~~~aNL---s~~~~~kyl~~L~~~GLI~~~-------~~~Y~iT~kG~~~L 65 (90)
T d1r7ja_ 17 SGSPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQE-------GKQYMLTKKGEELL 65 (90)
T ss_dssp TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TTEEEECHHHHHHH
T ss_pred CCCCccHHHHHcCC---CHHHHHHHHHHHHHCCCeeec-------CCEEEECccHHHHH
Confidence 45678999999999 679999999999999999887 48999999998544
|
| >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator OEOE1854 species: Oenococcus oeni [TaxId: 1247]
Probab=94.68 E-value=0.013 Score=43.77 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=51.9
Q ss_pred HhCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... +++.|..|||+.+++ +...+.++++.|...|++++.....|+-.-.+.+|+.|..+..
T Consensus 31 q~~vL~~l~~~~~~~it~~ela~~~~~---~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~ 100 (135)
T d3broa1 31 QMTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLET 100 (135)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHH
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHCc---CHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHHH
Confidence 45566666543 257999999999999 6799999999999999998875322221235999999886654
|
| >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Mlc protein N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.014 Score=38.18 Aligned_cols=47 Identities=9% Similarity=0.218 Sum_probs=40.6
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|... ++.|-.|||+.+|+ +...+.++++.|.+.|++.+.+
T Consensus 7 ~~~Il~~i~~~-g~~sr~eLa~~~gL---S~~Tvs~iv~~L~~~glv~e~g 53 (70)
T d1z6ra1 7 AGAVYRLIDQL-GPVSRIDLSRLAQL---APASITKIVHEMLEAHLVQELE 53 (70)
T ss_dssp HHHHHHHHHSS-CSCCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence 44578888774 89999999999999 5799999999999999998864
|
| >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator MgrA species: Staphylococcus aureus [TaxId: 1280]
Probab=94.65 E-value=0.014 Score=43.69 Aligned_cols=68 Identities=15% Similarity=0.288 Sum_probs=52.6
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++-|...|++++....+|+-.-.+.+|+.|..+..
T Consensus 36 q~~vL~~i~~~-~~~t~~~la~~l~~---~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~~~ 103 (136)
T d2bv6a1 36 QFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP 103 (136)
T ss_dssp HHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHHHH
Confidence 45667777664 79999999999999 5688999999999999999876433221234789999886543
|
| >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical transcriptional regulator ST1889 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=94.62 E-value=0.0049 Score=44.45 Aligned_cols=47 Identities=23% Similarity=0.395 Sum_probs=37.9
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
..++..|...++|.|+.+||+.+++ +...+.+.|+.|...|+|.+..
T Consensus 24 ~~iL~~L~~~~~~~t~~eLa~~~~i---~~~tvs~~l~~L~~~GlV~r~~ 70 (109)
T d2d1ha1 24 VAVLLKMVEIEKPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCc---cHhHHHHHHHHHHHCCCEEEee
Confidence 3344444322478999999999999 5699999999999999998875
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.48 E-value=0.024 Score=50.17 Aligned_cols=92 Identities=13% Similarity=0.070 Sum_probs=67.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------------CCCeEEEeCCCCC---
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---------------------TENLKYIAGDMFQ--- 249 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------------~~ri~~~~~D~~~--- 249 (360)
+..+|||..||+|..++..+...+..+++..|+ +.+++.+++ ...+.+...|...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 467999999999999999888887778999999 888876653 1235666666543
Q ss_pred CCC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 250 YIP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 250 ~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
... .||+|.+-- +..+ ..+|..+.++++. ||.|.|.-
T Consensus 125 ~~~~~fDvIDiDP----fGs~--~pfldsAi~a~~~---~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSP--MEFLDTALRSAKR---RGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECC----SSCC--HHHHHHHHHHEEE---EEEEEEEE
T ss_pred hhcCcCCcccCCC----CCCc--HHHHHHHHHHhcc---CCEEEEEe
Confidence 122 499987632 2222 4689999999998 77776653
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.47 E-value=0.1 Score=44.03 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=68.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CC-CccEEEe--
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---IP-PADAYFF-- 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~p-~~D~i~~-- 259 (360)
..++.+|||+.+|.|+=+..++....+.+++.+|. +.-+...+. ...+.....|.... .+ .||.|++
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 46778999999999999999999888889999998 544433321 33444444444331 22 5999987
Q ss_pred ----cccc-------ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 260 ----KLVF-------HAFGDED-------CLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ----~~~l-------h~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
..++ ..++..+ -.++|+++.+.|+| ||+|+-......
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~---gG~lvYsTCS~~ 234 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVL 234 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCC---CceEEEeeecCc
Confidence 2222 2223221 34689999999999 777765554443
|
| >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: DNA-binding protein Mj223 domain: DNA-binding protein Mj223 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.38 E-value=0.016 Score=44.05 Aligned_cols=48 Identities=23% Similarity=0.363 Sum_probs=40.5
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..++..|..+++|.|+.|||+.+|+ +...+.+.|+.|...|++.+..
T Consensus 28 ~~~i~~~L~~~~~plt~~ela~~l~v---sk~~vs~~l~~L~~~GlV~r~~ 75 (151)
T d1ku9a_ 28 VGAVYAILYLSDKPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW 75 (151)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHhCC---CcchHHHHHHHHHHCCCEEEEE
Confidence 45566677554578999999999999 5799999999999999998764
|
| >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical protein AF2008 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.11 E-value=0.014 Score=41.99 Aligned_cols=47 Identities=13% Similarity=0.293 Sum_probs=38.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..++..|... ++.|+.|||+.+|+ +...+.+.|+-|...|++.+..
T Consensus 22 e~~v~~~L~~~-g~~t~~eia~~~~i---~~~~v~~~l~~L~~~GlV~r~~ 68 (109)
T d1sfxa_ 22 DVRIYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHhCC---CcchHHHHHHHHHhCCCEEEEe
Confidence 44455666543 79999999999999 5699999999999999998753
|
| >d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtfH species: Salmonella typhimurium [TaxId: 90371]
Probab=94.06 E-value=0.048 Score=39.28 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCCCc
Q 018116 18 GHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKE 96 (360)
Q Consensus 18 ~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 96 (360)
+....++++.+-|...+|... .. |+....||.+.+ |+ +...|.+=|+.|...|++++....+..-
T Consensus 13 pv~~~l~~ig~kW~l~Il~~L---------~~--g~~RF~el~~~l~gi---s~~~Ls~rL~~Le~~glv~R~~~~~~p~ 78 (114)
T d1yyva1 13 PSREVLKHVTSRWGVLILVAL---------RD--GTHRFSDLRRKMGGV---SEKMLAQSLQALEQDGFLNRVSYPVVPP 78 (114)
T ss_dssp THHHHHHHHHSHHHHHHHHHG---------GG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEECSSSC
T ss_pred CHHHHHHHHcCCCHHHHHHHH---------hc--CCCCHHHHHHHcccc---chhHHHHHHHHHHHHHHHhhcccCCCCc
Confidence 567788888888888877652 22 789999999998 78 5688999999999999999875311011
Q ss_pred ccceecchhhhhhhc
Q 018116 97 EEAYGLTAISALLIK 111 (360)
Q Consensus 97 ~~~y~~t~~~~~l~~ 111 (360)
.-.|++|+.|..|.+
T Consensus 79 ~veY~LT~~G~~L~~ 93 (114)
T d1yyva1 79 HVEYSLTPLGEQVSD 93 (114)
T ss_dssp EEEEEECHHHHHHHH
T ss_pred hhHhHhhHhHHHHHH
Confidence 134999999997764
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.97 E-value=0.13 Score=44.01 Aligned_cols=104 Identities=11% Similarity=0.099 Sum_probs=69.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCCccEEEe--
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IPPADAYFF-- 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p~~D~i~~-- 259 (360)
..++.+|||+.+|.|+=+..++.... ...++..|. +.-+..... ..++.+...|... + ...||.|++
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 46778999999999998888888765 567899998 655544432 4567777777654 2 235999887
Q ss_pred ----cccc-------ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 260 ----KLVF-------HAFGDED-------CLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ----~~~l-------h~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
..++ ..+..++ -.++|+++.+.++| ||+|+-......
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~---gG~lVYsTCSl~ 248 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSLE 248 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCC---CcEEEEeeccCC
Confidence 1112 1122222 34688999999999 787665554443
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.94 E-value=0.062 Score=42.71 Aligned_cols=105 Identities=16% Similarity=0.081 Sum_probs=67.9
Q ss_pred cCCCCEEEEeCCCC-chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe---CCCCCC------CCCccEEEecc
Q 018116 193 FEGLGSIVDVGGGN-GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIA---GDMFQY------IPPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~---~D~~~~------~p~~D~i~~~~ 261 (360)
.+++.+||.+|||. |..+..+++.....+++++|. ++-++.+++..--.++. .|+.+. -.++|+++-.-
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v 102 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV 102 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence 67889999999998 667788888887779999998 77777776532222221 111110 12588887532
Q ss_pred c------ccc-CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 262 V------FHA-FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 262 ~------lh~-~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
- .|+ .........|+.+.++++| ||++.++-...+.
T Consensus 103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~---gG~v~~~G~~~~~ 145 (195)
T d1kola2 103 GFEARGHGHEGAKHEAPATVLNSLMQVTRV---AGKIGIPGLYVTE 145 (195)
T ss_dssp CTTCBCSSTTGGGSBCTTHHHHHHHHHEEE---EEEEEECSCCCSC
T ss_pred cccccCCcccceeecCcHHHHHHHHHHHhc---CCEEEEeeecCCC
Confidence 1 111 1111123579999999999 9999988754443
|
| >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator PA3341 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.90 E-value=0.027 Score=41.98 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=49.4
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.++-.|...+++.|..+||+.+++ +...+.++++.|...|++++....+|+-.-.+.+|+.|..+..
T Consensus 31 ~~iL~~l~~~~~~~t~~~la~~~~~---~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~~ 98 (137)
T d2fbha1 31 WLVLLHLARHRDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIA 98 (137)
T ss_dssp HHHHHHHHHCSSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHCC---CHHHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHHH
Confidence 3344455443357899999999999 6799999999999999999875322221124889998886653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.89 E-value=0.16 Score=39.35 Aligned_cols=93 Identities=12% Similarity=0.003 Sum_probs=62.1
Q ss_pred cCCCCEEEEeCCCC-chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEE---eCCCCC-C------CCCccEEEec
Q 018116 193 FEGLGSIVDVGGGN-GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYI---AGDMFQ-Y------IPPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~---~~D~~~-~------~p~~D~i~~~ 260 (360)
.+++.+||=+|||. |.++..+++..-..++++.|. ++-.+.+++..-..++ ..|-.. . ..++|+++-.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 56788999999997 788888999886668889998 6666665542222222 112111 0 1258998754
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCC-cEEEEEee
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGER-GKVLIMDI 296 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~g-G~lli~e~ 296 (360)
- .. ...+....+.++| | |+++++-.
T Consensus 106 ~-----G~---~~~~~~a~~~~~~---g~G~~v~vG~ 131 (174)
T d1e3ia2 106 A-----GT---AQTLKAAVDCTVL---GWGSCTVVGA 131 (174)
T ss_dssp S-----CC---HHHHHHHHHTBCT---TTCEEEECCC
T ss_pred c-----cc---chHHHHHHHHhhc---CCeEEEecCC
Confidence 2 12 2468889999998 7 88888654
|
| >d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtcD species: Bacillus subtilis [TaxId: 1423]
Probab=93.77 E-value=0.039 Score=38.39 Aligned_cols=57 Identities=19% Similarity=0.153 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 52 RPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 52 ~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++....||.+.+ |+ ++..|.+=|+.|.+.|++++....+..-.-.|++|+.|..|.+
T Consensus 23 g~~rF~el~~~l~gi---s~~~Ls~rLk~Le~~glv~r~~~~~~p~~veY~LT~~G~~L~p 80 (95)
T d2hzta1 23 GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEG 80 (95)
T ss_dssp CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred CCCCHHHHHHHhhcC---ChhHHHHHHHHHHHhHHHhheeccccccchhhhhhhhHHHHHH
Confidence 799999999997 99 5699999999999999999865311111124999999987764
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.76 E-value=0.072 Score=40.86 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=51.7
Q ss_pred EEEEeCCC--CchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChhHHHHH
Q 018116 198 SIVDVGGG--NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKI 274 (360)
Q Consensus 198 ~iLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~ 274 (360)
+|.=||+| .+.++..|.++ +.+++++|. ++.++.+.+...+.... +..+...++|+|++. .|.....++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~~-~~~~~~~~~DiIila-----vp~~~~~~v 73 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEAG-QDLSLLQTAKIIFLC-----TPIQLILPT 73 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEEE-SCGGGGTTCSEEEEC-----SCHHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhccceee-eeccccccccccccc-----CcHhhhhhh
Confidence 46667776 33445555544 778999999 77777665433232222 222334579999864 367778899
Q ss_pred HHHHHHhccC
Q 018116 275 LKKCREAIAG 284 (360)
Q Consensus 275 L~~~~~~L~p 284 (360)
++++...+++
T Consensus 74 l~~l~~~l~~ 83 (165)
T d2f1ka2 74 LEKLIPHLSP 83 (165)
T ss_dssp HHHHGGGSCT
T ss_pred hhhhhhhccc
Confidence 9999998887
|
| >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Multiple antibiotic resistance repressor, MarR species: Escherichia coli [TaxId: 562]
Probab=93.70 E-value=0.03 Score=41.86 Aligned_cols=68 Identities=22% Similarity=0.195 Sum_probs=52.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+++..|...|++++.....|+-.-.+++|+.|..+..
T Consensus 36 q~~vL~~l~~~-~~~t~~ela~~~~i---~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~ 103 (138)
T d1jgsa_ 36 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHhHHhC-cCCCHHHHHHHHCC---CHhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHHH
Confidence 45556666553 69999999999999 6799999999999999999865322221235999999886653
|
| >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator TM0710 species: Thermotoga maritima [TaxId: 2336]
Probab=93.69 E-value=0.016 Score=43.51 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=50.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++-++..|... ++.|+.+||+.+++ +...+.+.++.|...|++++.....|+-.-.+.+|+.|..+..
T Consensus 32 q~~iL~~i~~~-~~~t~~~la~~l~i---~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~ 99 (139)
T d2a61a1 32 QFDILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 99 (139)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHH
Confidence 34455556543 69999999999999 5689999999999999998875311111234999999986654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.64 E-value=0.15 Score=39.34 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=59.6
Q ss_pred cCCCCEEEEeCCCCc-hHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCC---CCCC----CC-CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNG-GFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGD---MFQY----IP-PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D---~~~~----~p-~~D~i~~~~~ 262 (360)
.+++.+||=+|||.- ..+..+++.+...++++.|. +.-++.+++..-..++..+ ..+. .+ ++|+|+-.-
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~- 104 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST- 104 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS-
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcC-
Confidence 567889999999854 45677777776667888887 6666666542222233222 1110 12 489887532
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.. ...++.+.+.++| +|+++++-.
T Consensus 105 ----G~---~~~~~~~~~~~~~---~G~i~~~G~ 128 (174)
T d1f8fa2 105 ----GS---PEILKQGVDALGI---LGKIAVVGA 128 (174)
T ss_dssp ----CC---HHHHHHHHHTEEE---EEEEEECCC
T ss_pred ----Cc---HHHHHHHHhcccC---ceEEEEEee
Confidence 11 2467888899999 999988654
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.069 Score=49.38 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=63.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC------------------CCeEEEeec-hHHHhcCCC-----------CCCeEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP------------------GIKCTVLDL-PHAVANMPQ-----------TENLKYI 243 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~-----------~~ri~~~ 243 (360)
....+|+|-.||+|.++....+... ...+.|+|. +.+...++. ...-.+.
T Consensus 163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~ 242 (524)
T d2ar0a1 163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 242 (524)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhh
Confidence 4567999999999999987665421 125789998 766654431 1123445
Q ss_pred eCCCCC-C---CCCccEEEecccccc-C------------ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 244 AGDMFQ-Y---IPPADAYFFKLVFHA-F------------GDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 244 ~~D~~~-~---~p~~D~i~~~~~lh~-~------------~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.++... + .+.||+|+++=-+.. + +.. -..++.++.+.|+| ||++.++-+
T Consensus 243 ~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~-~~~Fi~~~l~~Lk~---gGr~aiIlP 308 (524)
T d2ar0a1 243 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK-QLCFMQHIIETLHP---GGRAAVVVP 308 (524)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCH-HHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred hhhhhhhcccccccceeEEecCCccccccccchhhhccccccc-cHHHHHHHHHhccc---cCcEEEEEe
Confidence 556554 1 246999988543311 0 111 23589999999999 999877643
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.39 E-value=0.05 Score=42.00 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=58.1
Q ss_pred cCCCCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC---C-CCCccEEEecccccc
Q 018116 193 FEGLGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ---Y-IPPADAYFFKLVFHA 265 (360)
Q Consensus 193 ~~~~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~---~-~p~~D~i~~~~~lh~ 265 (360)
..++.+||-+|+| .|.++..+++.+ +++++++|. ++-++.+++ .....+...+-.+ . ...+|+++..-.-.
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~- 102 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL- 102 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS-
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC-
Confidence 6788999999998 667777777764 789999998 666666654 1111122121111 1 23589887642211
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.+. .+....+.|+| +|+++++-.
T Consensus 103 -~~~----~~~~~~~~l~~---~G~iv~~G~ 125 (168)
T d1piwa2 103 -TDI----DFNIMPKAMKV---GGRIVSISI 125 (168)
T ss_dssp -TTC----CTTTGGGGEEE---EEEEEECCC
T ss_pred -ccc----hHHHHHHHhhc---cceEEEecc
Confidence 110 13456677999 899988764
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=93.26 E-value=0.15 Score=39.67 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=60.9
Q ss_pred cCCCCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCC-CeEEEeC--CCCC--------CCC-CccEEE
Q 018116 193 FEGLGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTE-NLKYIAG--DMFQ--------YIP-PADAYF 258 (360)
Q Consensus 193 ~~~~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-ri~~~~~--D~~~--------~~p-~~D~i~ 258 (360)
.+++.+||-+|+| .|.++..+++.+...+++++|. ++-++.+++.. ...+-.. |..+ ..+ ++|+|+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 4567899999998 3778888888874448999998 77666665421 1112111 1111 012 489987
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
-.- .. ...++.+.++|+| ||+++++-...+
T Consensus 106 d~v-----G~---~~~~~~a~~~l~~---~G~iv~~G~~~~ 135 (182)
T d1vj0a2 106 EAT-----GD---SRALLEGSELLRR---GGFYSVAGVAVP 135 (182)
T ss_dssp ECS-----SC---TTHHHHHHHHEEE---EEEEEECCCCSC
T ss_pred ecC-----Cc---hhHHHHHHHHhcC---CCEEEEEeecCC
Confidence 432 11 1347788899999 999988765433
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.12 E-value=0.81 Score=34.62 Aligned_cols=93 Identities=12% Similarity=0.140 Sum_probs=61.4
Q ss_pred cCCCCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCC-----------CC-CccEE
Q 018116 193 FEGLGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQY-----------IP-PADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~-----------~p-~~D~i 257 (360)
..++.+||-+||| .|.++..+++.. +++++++|. ++-++.+++ .....+..-+...+ .+ ++|++
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 6778899999988 566777777765 579999998 777776654 22222222211111 12 48988
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+-.- .. ...+..+.+.++| +|+++++-..
T Consensus 103 id~~-----g~---~~~~~~a~~~~~~---~G~iv~~G~~ 131 (170)
T d1e3ja2 103 IDCS-----GN---EKCITIGINITRT---GGTLMLVGMG 131 (170)
T ss_dssp EECS-----CC---HHHHHHHHHHSCT---TCEEEECSCC
T ss_pred eecC-----CC---hHHHHHHHHHHhc---CCceEEEecC
Confidence 7532 12 2457888889999 9999987644
|
| >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: LprA species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.01 E-value=0.028 Score=35.43 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=40.4
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+..|...|.. ++..|+.+||+++|+ ++..+.+-++.|...|++...
T Consensus 4 ~D~kIl~~L~~-n~r~s~~~lA~~~gl---s~~~v~~Ri~~L~~~giI~~~ 50 (60)
T d1i1ga1 4 RDKIILEILEK-DARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGY 50 (60)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeE
Confidence 35677888887 479999999999999 578999999999999999765
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=92.93 E-value=0.027 Score=46.70 Aligned_cols=64 Identities=19% Similarity=0.341 Sum_probs=47.2
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC-------C--------CCCeEEEeCCCCC---C-CCCccE
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP-------Q--------TENLKYIAGDMFQ---Y-IPPADA 256 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~--------~~ri~~~~~D~~~---~-~p~~D~ 256 (360)
.+|||.-||.|.-+..++.. ++++++++. |.+....+ . ..|++++.+|..+ . .+.||+
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv 167 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence 48999999999999999988 689999998 54432221 1 3489999998754 2 235888
Q ss_pred EEeccc
Q 018116 257 YFFKLV 262 (360)
Q Consensus 257 i~~~~~ 262 (360)
|++==.
T Consensus 168 IYlDPM 173 (250)
T d2oyra1 168 VYLDPM 173 (250)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 887333
|
| >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Salmonella typhimurium [TaxId: 90371]
Probab=92.93 E-value=0.033 Score=41.63 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=48.5
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...+++.|..+||+.+++ +...+.+.++.|...|++++.....|+-.-.+++|+.|..+..
T Consensus 33 ~~~~L~~l~~~~~~~t~~~la~~l~i---~~~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~~ 101 (140)
T d3deua1 33 HWVTLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 101 (140)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHCC---CHhHHHHHHHHHHhCCCEEecccCCCCCceeeEECHHHHHHHH
Confidence 34455555543357999999999999 6789999999999999998765322111125999999886653
|
| >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein BC1842 species: Bacillus cereus [TaxId: 1396]
Probab=92.91 E-value=0.039 Score=41.25 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
.+.|.++||+.++++ +..++++|+.|...|+|+-.. | .|+|.+...
T Consensus 22 ~~vss~~IA~~~~i~---~~~l~kil~~L~~aGlv~S~r----G-~GG~~L~~~ 67 (138)
T d1ylfa1 22 SLCTSDYMAESVNTN---PVVIRKIMSYLKQAGFVYVNR----G-PGGAGLLKD 67 (138)
T ss_dssp GGCCHHHHHHHHTSC---HHHHHHHHHHHHHTTSEEEC--------CCEEESSC
T ss_pred CcCcHHHHHHHHCcC---HHHHHHHHHHHHHCCCeEeec----C-CCCceecCC
Confidence 589999999999994 699999999999999998876 2 477877543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=0.64 Score=35.35 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=61.5
Q ss_pred cCCCCEEEEeCCCCc-hHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC--C--------CC-CccEEEe
Q 018116 193 FEGLGSIVDVGGGNG-GFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ--Y--------IP-PADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~--~--------~p-~~D~i~~ 259 (360)
..++.+|+=+|||.. .++..+++.....+++++|. +.-++.+++..--.+...+-.. . .+ ++|+++-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 567889999999865 45566777665558999998 7777776642111112111111 0 12 5898876
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
.- .. ...++.+.+.+++ ||+++++-....
T Consensus 104 ~~-----G~---~~~~~~a~~~~~~---gG~iv~~G~~~~ 132 (171)
T d1pl8a2 104 CT-----GA---EASIQAGIYATRS---GGTLVLVGLGSE 132 (171)
T ss_dssp CS-----CC---HHHHHHHHHHSCT---TCEEEECSCCCS
T ss_pred cc-----CC---chhHHHHHHHhcC---CCEEEEEecCCC
Confidence 43 22 2468888899999 999998775443
|
| >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Putative transcriptional regulator PH1519 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.68 E-value=0.037 Score=34.86 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=41.2
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
++..|...|.. ++..|+.|||+++|+ ++..+.+-++.|...|++...
T Consensus 4 ~D~~Il~~L~~-n~r~s~~eiA~~l~l---s~~~v~~Ri~~L~~~giI~~~ 50 (60)
T d2cyya1 4 IDKKIIKILQN-DGKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 50 (60)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeE
Confidence 46778888887 479999999999999 578999999999999999865
|
| >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA4135 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.54 E-value=0.023 Score=42.42 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=51.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++-|...|++++....+|+-.-.+++|+.|..+..
T Consensus 32 q~~vL~~l~~~-~~~t~~~la~~~~i---~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~ 99 (136)
T d2fbia1 32 QWRVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 99 (136)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHHH
Confidence 44556666653 79999999999999 6799999999999999998875322111123889999886654
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.37 E-value=0.42 Score=36.62 Aligned_cols=97 Identities=10% Similarity=-0.061 Sum_probs=58.9
Q ss_pred cCCCCEEEEeCCCCc-hHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe-CCCCCC--------C-CCccEEEec
Q 018116 193 FEGLGSIVDVGGGNG-GFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIA-GDMFQY--------I-PPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~-~D~~~~--------~-p~~D~i~~~ 260 (360)
.+++.+||=+|+|.+ ..+..+++.+-..+++++|. ++-.+.+++..-...+. .+-.+. . .++|+++-.
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 678899999988654 46677788877789999998 66666655422222221 111111 1 259998865
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
.... ..++.+...+++ ||+.+++-...+.
T Consensus 106 ~G~~--------~~~~~a~~~~~~---~~g~~~~~~~~~~ 134 (176)
T d2jhfa2 106 IGRL--------DTMVTALSCCQE---AYGVSVIVGVPPD 134 (176)
T ss_dssp SCCH--------HHHHHHHHHBCT---TTCEEEECSCCCT
T ss_pred CCch--------hHHHHHHHHHhc---CCcceEEecCCCC
Confidence 4321 346667777887 6555554444333
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.24 E-value=0.098 Score=40.23 Aligned_cols=94 Identities=21% Similarity=0.225 Sum_probs=59.8
Q ss_pred cCCCCEEEEeCC-C-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---C-----CC-CccEEEec
Q 018116 193 FEGLGSIVDVGG-G-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ---Y-----IP-PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~-G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~---~-----~p-~~D~i~~~ 260 (360)
..+..+||=+|| | .|..+..+++.....+++++|. ++-.+.+++..--.++..+-.+ . .+ .+|+++-.
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~ 104 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDL 104 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcc
Confidence 677889999996 3 5566777888776678999998 6655555431111222222111 1 12 49988764
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
.. . ...++.+.++++| ||+++++-..
T Consensus 105 ~g-----~---~~~~~~a~~~l~~---~G~iv~~G~~ 130 (170)
T d1jvba2 105 NN-----S---EKTLSVYPKALAK---QGKYVMVGLF 130 (170)
T ss_dssp CC-----C---HHHHTTGGGGEEE---EEEEEECCSS
T ss_pred cc-----c---chHHHhhhhhccc---CCEEEEeccc
Confidence 32 1 2456777888999 9999887543
|
| >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Enterococcus faecalis [TaxId: 1351]
Probab=92.20 E-value=0.054 Score=40.71 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=49.1
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+...|... ++.|..+||+.+++ +...+.+.++.|...|++++....+|+-.-...+|+.|..+..
T Consensus 34 iL~~i~~~-~~~t~~~la~~l~i---~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~~ 98 (144)
T d1lj9a_ 34 YLVRVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP 98 (144)
T ss_dssp HHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHhC-CCCCHHHHHHHHCc---cHhhHHHHHHHHHhhhcccccCCCCCCCccccccCHHHHHHHH
Confidence 34445553 68999999999999 5799999999999999999876322221225889998886553
|
| >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Regulatory protein AsnC species: Escherichia coli [TaxId: 562]
Probab=92.19 E-value=0.046 Score=34.74 Aligned_cols=47 Identities=11% Similarity=0.280 Sum_probs=40.9
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+..|...|... +..|..|||+++|+ ++..+.+=++.|.+.|++...
T Consensus 6 ~D~~IL~~L~~~-~r~s~~eiA~~l~l---s~~~v~~Ri~rL~~~GiI~~~ 52 (63)
T d2cg4a1 6 LDRGILEALMGN-ARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGA 52 (63)
T ss_dssp HHHHHHHHHHHC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeE
Confidence 356788888874 89999999999999 568899999999999999865
|
| >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Organic hydroperoxide resistance transcriptional regulator OhrR species: Bacillus subtilis [TaxId: 1423]
Probab=92.15 E-value=0.035 Score=41.40 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=50.8
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.++..|... ++.|..+||+.+++ +...+.+.++.|...|++.+.....|+-.-..++|+.|..+..
T Consensus 36 ~~vL~~l~~~-~~~t~~~La~~~~i---~~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~ 102 (137)
T d1z91a1 36 YLALLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 102 (137)
T ss_dssp HHHHHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHCc---CHHHHHHHHHHHhhccceEEeecCCCCCeEEEEECHHHHHHHH
Confidence 4445566543 79999999999999 5799999999999999999876322221233899999986654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.10 E-value=0.23 Score=38.45 Aligned_cols=134 Identities=10% Similarity=-0.021 Sum_probs=72.8
Q ss_pred cCCCCEEEEeCCCCc-hHHHHHHHHCCCCeEEEeec-hHHHhcCCCC-CCeEE--EeCCCCCC------CC-CccEEEec
Q 018116 193 FEGLGSIVDVGGGNG-GFSKIISEAFPGIKCTVLDL-PHAVANMPQT-ENLKY--IAGDMFQY------IP-PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~ri~~--~~~D~~~~------~p-~~D~i~~~ 260 (360)
.+++.+||=+|||.. ..+..+++.+...+++++|. ++-++.+++. ....+ ...|.... .+ ++|+++-.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~ 106 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV 106 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence 567889999999854 46677777776679999999 8888877752 21122 22221110 12 58887754
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHH
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLD 338 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~ 338 (360)
.. . ...++.....+.+. +|+++++-......... +..........+.....|...+..++.++++.
T Consensus 107 ~g-----~---~~~~~~a~~~~~~~--~G~~v~vG~~~~~~~~~--~~~~~~~~~~~i~Gs~~G~~~~~~dip~li~~ 172 (176)
T d1d1ta2 107 IG-----H---LETMIDALASCHMN--YGTSVVVGVPPSAKMLT--YDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTE 172 (176)
T ss_dssp SC-----C---HHHHHHHHTTSCTT--TCEEEECSCCCTTCCEE--ECTHHHHTTCEEEECSGGGCCHHHHHHHHHHH
T ss_pred CC-----c---hHHHHHHHHHhhcC--CeEEEEEEccccccccC--CCHHHHhCCCEEEEEEEeCCCcHHHHHHHHHH
Confidence 32 1 13345555555540 58888866543333221 11111122222222233445567777766653
|
| >d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PG0823 species: Porphyromonas gingivalis [TaxId: 837]
Probab=92.00 E-value=0.064 Score=37.74 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCCCc
Q 018116 18 GHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKE 96 (360)
Q Consensus 18 ~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 96 (360)
+....++++.+-|...+|+.. .. ++....||.+.+ |+ ++..|.+=|+.|.+.|++.+....+..-
T Consensus 9 pv~~~l~ilg~kW~l~Il~~L---------~~--g~~rF~el~~~l~gI---s~~~Ls~rLkeL~~~glv~r~~~~~~p~ 74 (102)
T d2fswa1 9 PVRKSMQIFAGKWTLLIIFQI---------NR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPEVPP 74 (102)
T ss_dssp HHHHHHHHHTSSSHHHHHHHH---------TT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred CHHHHHHHHcCCCHHHHHHHH---------cc--CCCCHHHHHhhCccc---chhHHHHHHHHHHHCCceeecccCCCCC
Confidence 566677777777777666542 22 789999999997 89 5689999999999999998865211000
Q ss_pred ccceecchhhhhhhc
Q 018116 97 EEAYGLTAISALLIK 111 (360)
Q Consensus 97 ~~~y~~t~~~~~l~~ 111 (360)
.-.|++|+.|..|.+
T Consensus 75 ~veY~LT~~G~~L~p 89 (102)
T d2fswa1 75 RVEYSLTPLGEKVLP 89 (102)
T ss_dssp EEEEEECHHHHTTHH
T ss_pred eehhhhhHhHHHHHH
Confidence 124999999987764
|
| >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Transcriptional regulator LrpC species: Bacillus subtilis [TaxId: 1423]
Probab=91.94 E-value=0.064 Score=34.04 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=40.8
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+..|.+.|.. ++..|..+||+.+|+ ++.-+.+=++-|...|++...
T Consensus 6 ~D~~IL~~L~~-n~r~s~~~iA~~lgi---s~~tv~~Ri~~L~~~giI~~~ 52 (63)
T d2cfxa1 6 IDLNIIEELKK-DSRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQY 52 (63)
T ss_dssp HHHHHHHHHHH-CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeE
Confidence 45678888887 489999999999999 568899999999999999764
|
| >d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein EF0647 species: Enterococcus faecalis [TaxId: 1351]
Probab=91.71 E-value=0.087 Score=37.45 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCCCc
Q 018116 18 GHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKE 96 (360)
Q Consensus 18 ~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 96 (360)
+....++++.+-|...+|.. |.. |+....||.+.+ |+ ++..|.+=|+.|...|++.+....+..-
T Consensus 8 ~i~~al~iig~kW~~~Il~~---------L~~--g~~RF~el~~~l~gI---S~~~Ls~rLk~L~~~glv~R~~~~~~p~ 73 (108)
T d1z7ua1 8 SINLALSTINGKWKLSLMDE---------LFQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFNELPP 73 (108)
T ss_dssp HHHHHHHTTCSTTHHHHHHH---------HHH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEECCSSC
T ss_pred cHHHHHHHHcCCCHHHHHHH---------HHc--CCCCHHHHHHHCcCC---ChhHHHHHHHHHHHCCcceeeccCCCcc
Confidence 44455555556666555543 333 789999999997 79 5699999999999999998865211000
Q ss_pred ccceecchhhhhhhc
Q 018116 97 EEAYGLTAISALLIK 111 (360)
Q Consensus 97 ~~~y~~t~~~~~l~~ 111 (360)
.-.|++|+.|..|.+
T Consensus 74 ~veY~LT~~G~~L~p 88 (108)
T d1z7ua1 74 RVEYTLTPEGYALYD 88 (108)
T ss_dssp EEEEEECHHHHHHHH
T ss_pred eehhhhchhHHHHHH
Confidence 123999999997764
|
| >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Pleiotropic regulator of virulence genes, SarA species: Staphylococcus aureus [TaxId: 1280]
Probab=91.45 E-value=0.057 Score=38.92 Aligned_cols=67 Identities=13% Similarity=0.240 Sum_probs=49.2
Q ss_pred hCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 41 LGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 41 l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+.++..|... +++.|..+||+.+++ +...+.+.++.|...|++.+....+|+-.-.+.+|+.|....
T Consensus 36 ~~vL~~l~~~~~~~~t~~~la~~l~~---~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~ 103 (115)
T d2frha1 36 FAVLTYISENKEKEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 103 (115)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHCC---CHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHH
Confidence 3344445432 256899999999999 579999999999999999998643322223488999887544
|
| >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=91.42 E-value=0.061 Score=39.43 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=50.3
Q ss_pred HhCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 40 ELGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 40 ~l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.++..|... +++.+..+||+.+++ +...+.+.++-|...|++++....+|+-.-...+|+.|..+.
T Consensus 35 q~~vL~~l~~~~~~~~~~~~ia~~l~~---~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~~~ 103 (125)
T d1p4xa2 35 EFTILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 103 (125)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHccCCCccHHHHHHHHCC---CcchHHHHHHHHHhccCEeeeecCCCCCeEEEEECHHHHHHH
Confidence 44556666432 257899999999999 579999999999999999987533222123488999987554
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.38 E-value=0.25 Score=37.63 Aligned_cols=91 Identities=11% Similarity=0.079 Sum_probs=56.8
Q ss_pred cCCCCEEEEeCCCC-chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCccEEEecccc
Q 018116 193 FEGLGSIVDVGGGN-GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY-------IPPADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~-------~p~~D~i~~~~~l 263 (360)
.+++.+||=+|+|. |..+..+++.. +.+++++|. +.-++.+++..-..++..+-.+. ..++|.++....
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~- 102 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV- 102 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS-
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc-
Confidence 67788999999884 55666777776 589999998 76676665422222222211110 123444443221
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
. ...++.+.+.|+| ||+++++-
T Consensus 103 ---~----~~~~~~~~~~l~~---~G~iv~~G 124 (166)
T d1llua2 103 ---S----NSAFGQAIGMARR---GGTIALVG 124 (166)
T ss_dssp ---C----HHHHHHHHTTEEE---EEEEEECC
T ss_pred ---c----chHHHHHHHHhcC---CcEEEEEE
Confidence 1 2357788899999 99998865
|
| >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=91.29 E-value=0.086 Score=38.53 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=49.8
Q ss_pred HhCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 40 ELGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 40 ~l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.++..|... ++++|..|||+.+++ +...+.+.++.|...|++.+....+|+-.-...+|+.|....
T Consensus 36 q~~iL~~l~~~~~~~~t~~eia~~~~~---~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~ 104 (125)
T d1p4xa1 36 EFILLTYLFHQQENTLPFKKIVSDLCY---KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (125)
T ss_dssp HHHHHHHHHSCSCSEEEHHHHHHHSSS---CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhccCCcCHHHHHHHhCC---CcchHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHHHHH
Confidence 45555566442 257899999999999 579999999999999999987632222122388888887444
|
| >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Iron-dependent regulator IdeR species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.08 E-value=0.13 Score=32.57 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+++.+..+||+.+|+ .+.-+.+.++-|...|+++.+.
T Consensus 21 ~~~v~~~~iA~~L~v---s~~SVt~mvkrL~~~Glv~~~~ 57 (63)
T d2isya1 21 GVTPLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG 57 (63)
T ss_dssp TCCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT
T ss_pred CCCCcHHHHHHHhCC---CchhHHHHHHHHHHCCCEEEcC
Confidence 478999999999999 4688999999999999999875
|
| >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarR species: Staphylococcus aureus [TaxId: 1280]
Probab=90.93 E-value=0.072 Score=38.35 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=49.4
Q ss_pred hCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 41 LGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 41 l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+.++..|... +++.|..+||+.+++ +...+.++++.|...|++.+....+|+-.-...+|+.|..+.
T Consensus 35 ~~vL~~l~~~~~~~~t~~ela~~l~~---~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~ 102 (115)
T d1hsja1 35 IYILNHILRSESNEISSKEIAKCSEF---KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 102 (115)
T ss_dssp HHHHHHHHTCSCSEEEHHHHHHSSCC---CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHccCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHH
Confidence 3445555421 268999999999999 579999999999999999987642222123488888887554
|
| >d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PA1607 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.84 E-value=0.13 Score=38.46 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccc
Q 018116 20 GQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEA 99 (360)
Q Consensus 20 ~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~ 99 (360)
.+.++++-+-|...+|+.+. . |+..+.||.+.+|+ ++..|.+=|+.|...|++.+... +......
T Consensus 11 ~~~l~ilg~kW~l~Il~~l~---------~--G~~rf~el~~~lgi---s~~vLs~rL~~L~~~gLv~r~~~-~~p~r~~ 75 (142)
T d2f2ea1 11 ARPLDVIGDGWSMLIVRDAF---------E--GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPA-ESGSHQE 75 (142)
T ss_dssp TTTHHHHCSSSHHHHHHHHH---------T--TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEEC-SSSSCEE
T ss_pred HHHHHHHcCCCHHHHHHHHH---------c--CCCCHHHHHHHhhc---cHHHHHHHHHHHHHhcceeeecC-CCCCeeE
Confidence 44555666666666666542 2 79999999999999 56889999999999999987431 1111235
Q ss_pred eecchhhhhhhc
Q 018116 100 YGLTAISALLIK 111 (360)
Q Consensus 100 y~~t~~~~~l~~ 111 (360)
|++|+.|..|.+
T Consensus 76 Y~LT~~G~~L~p 87 (142)
T d2f2ea1 76 YRLTDKGRALFP 87 (142)
T ss_dssp EEECHHHHTTHH
T ss_pred EecCcCcchHHH
Confidence 999999987764
|
| >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Manganese transport regulator MntR species: Bacillus subtilis [TaxId: 1423]
Probab=90.72 E-value=0.081 Score=33.30 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++.+..+||+.+|+ ++.-....++-|...|+++...
T Consensus 20 ~~v~~~~iA~~L~v---s~~SVs~mikrL~~~GlV~~~~ 55 (61)
T d2ev0a1 20 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK 55 (61)
T ss_dssp SSCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC--
T ss_pred CCccHHHHHHHhCC---CchhHHHHHHHHHHCCCEEEcc
Confidence 79999999999999 5688999999999999999875
|
| >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: LexA repressor, N-terminal DNA-binding domain domain: LexA repressor, N-terminal DNA-binding domain species: Escherichia coli [TaxId: 562]
Probab=90.70 E-value=0.092 Score=34.17 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+-|-|+.|||+.+|+. ++..+.+.|..|...|++++..
T Consensus 22 G~~Ps~rei~~~~g~~--S~stv~~~l~~Le~kG~I~r~~ 59 (71)
T d1jhfa1 22 GMPPTRAEIAQRLGFR--SPNAAEEHLKALARKGVIEIVS 59 (71)
T ss_dssp SSCCCHHHHHHHTTCS--SHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCCCHHHHHHHcCCC--CHHHHHHHHHHHHHCcCeecCC
Confidence 4699999999999994 4578999999999999999974
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.31 E-value=0.2 Score=38.37 Aligned_cols=92 Identities=10% Similarity=0.053 Sum_probs=57.5
Q ss_pred cCCCCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC----CCCCccEEEeccccccC
Q 018116 193 FEGLGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ----YIPPADAYFFKLVFHAF 266 (360)
Q Consensus 193 ~~~~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~----~~p~~D~i~~~~~lh~~ 266 (360)
..++.+||=+|+| .|.++..+++.+ +++.+++|. ++-.+.+++..--.++...-.. ...++|+++-.--
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g---- 102 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA---- 102 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS----
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee----
Confidence 6788999999987 466778888876 678888887 5555555441111222111101 1225998875421
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.+ ..++...+.++| +|+++++-.
T Consensus 103 -~~---~~~~~~~~~l~~---~G~iv~~G~ 125 (168)
T d1uufa2 103 -AP---HNLDDFTTLLKR---DGTMTLVGA 125 (168)
T ss_dssp -SC---CCHHHHHTTEEE---EEEEEECCC
T ss_pred -cc---hhHHHHHHHHhc---CCEEEEecc
Confidence 11 236677788999 899998754
|
| >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Protease production regulatory protein Hpr species: Bacillus subtilis [TaxId: 1423]
Probab=90.19 E-value=0.065 Score=41.23 Aligned_cols=67 Identities=19% Similarity=0.117 Sum_probs=49.8
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.++..|... ++.|..+||+.+++ +...+.++++.|...|++++....+|+-.-.+.+|+.|..+..
T Consensus 44 ~~vL~~l~~~-~~~t~~~la~~~~l---~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~ 110 (162)
T d2fxaa1 44 HHILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 110 (162)
T ss_dssp HHHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHhhhccC-CCcCHHHHHHHHcC---CchhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHHH
Confidence 4456666553 68999999999999 6799999999999999999875322221234899999986553
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=90.05 E-value=1 Score=34.39 Aligned_cols=98 Identities=6% Similarity=-0.087 Sum_probs=60.3
Q ss_pred cCCCCEEEEeCCCCc-hHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEE---eCCCCC-C-----C-CCccEEEec
Q 018116 193 FEGLGSIVDVGGGNG-GFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYI---AGDMFQ-Y-----I-PPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~---~~D~~~-~-----~-p~~D~i~~~ 260 (360)
.+++.+||-+|||.. ..+..+++.....+++++|. ++-++.+++..-..++ ..|... . . .++|+++-.
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 677899999999854 45566777776678999998 7667766653222222 223211 0 1 258888754
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
-. . ...+......+++ ++|+++++-...+.
T Consensus 105 ~g-----~---~~~~~~~~~~~~~--~~G~~v~vG~~~~~ 134 (174)
T d1p0fa2 105 AG-----R---IETMMNALQSTYC--GSGVTVVLGLASPN 134 (174)
T ss_dssp SC-----C---HHHHHHHHHTBCT--TTCEEEECCCCCTT
T ss_pred CC-----C---chHHHHHHHHHHH--hcCceEEEEEecCc
Confidence 22 1 2456667776765 05788877654433
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=89.83 E-value=0.054 Score=42.18 Aligned_cols=94 Identities=13% Similarity=0.042 Sum_probs=60.4
Q ss_pred cCCCCEEEEeCCCC-chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEE---eCCCCC---C-C--CCccEEEecc
Q 018116 193 FEGLGSIVDVGGGN-GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYI---AGDMFQ---Y-I--PPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~---~~D~~~---~-~--p~~D~i~~~~ 261 (360)
.+++.+||=+|||. |..+..+++.+...+++++|. ++-.+.+++..-..++ ..+..+ . . .++|+|+-.-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 66788899999986 778888888764457999998 6666666542111222 111111 1 1 1499887542
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
- . ...++.+.+.++| +|+++++-..
T Consensus 105 g-----~---~~~~~~a~~~~~~---~G~iv~~G~~ 129 (174)
T d1jqba2 105 G-----G---SETLSQAVKMVKP---GGIISNINYH 129 (174)
T ss_dssp S-----C---TTHHHHHHHHEEE---EEEEEECCCC
T ss_pred C-----C---HHHHHHHHHHHhc---CCEEEEEeec
Confidence 2 1 1357788889999 8999887643
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.78 E-value=0.75 Score=34.63 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=54.8
Q ss_pred cCCCCEEEEeCCCCchHH-HHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC---CCCCC----CCCccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFS-KIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAG---DMFQY----IPPADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~-~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~---D~~~~----~p~~D~i~~~~~l 263 (360)
..++.+||=.|+|.-..+ ..+++. .+.++++++. ++-++.+++..--.++.. |.... .++.|.++....
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 102 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV- 102 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-
Confidence 677889999999865544 455555 5679999997 666665554211111111 11110 134444443321
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
. ...+..+.++|+| ||+++++-.
T Consensus 103 ---~----~~~~~~a~~~l~~---~G~i~~~g~ 125 (168)
T d1rjwa2 103 ---S----KPAFQSAYNSIRR---GGACVLVGL 125 (168)
T ss_dssp ---C----HHHHHHHHHHEEE---EEEEEECCC
T ss_pred ---C----HHHHHHHHHHhcc---CCceEeccc
Confidence 2 2458889999999 899888753
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.64 E-value=0.82 Score=34.76 Aligned_cols=95 Identities=17% Similarity=0.079 Sum_probs=58.0
Q ss_pred cCCCCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC-CCCCC--------CC-CccEEEec
Q 018116 193 FEGLGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAG-DMFQY--------IP-PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~-D~~~~--------~p-~~D~i~~~ 260 (360)
.+++.+||=.||| .|.++..+++..-..+++++|. ++-.+.+++..--.++.. +-.++ .+ ++|+|+-.
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~ 105 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence 6778899998887 3456677888776678888887 666666654111112211 10011 12 59998864
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
- .. ...++.+...+++ ||.++++-...
T Consensus 106 ~-----G~---~~~~~~~~~~~~~---g~~~~~v~~~~ 132 (176)
T d2fzwa2 106 I-----GN---VKVMRAALEACHK---GWGVSVVVGVA 132 (176)
T ss_dssp S-----CC---HHHHHHHHHTBCT---TTCEEEECSCC
T ss_pred C-----CC---HHHHHHHHHhhcC---CceeEEEEeec
Confidence 2 22 2457788888888 77776654433
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=89.19 E-value=0.82 Score=34.77 Aligned_cols=93 Identities=9% Similarity=0.031 Sum_probs=59.7
Q ss_pred cCCCCEEEEeCCCCch-HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCC--CCC-----CCC-CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGG-FSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGD--MFQ-----YIP-PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D--~~~-----~~p-~~D~i~~~~~ 262 (360)
..+..+||-+|+|... .+..+++.+...+++++|. ++-++.+++..-..++..+ ..+ ..+ ++|+++-.-.
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence 4677899999998654 5567777776678899998 6656665542222333221 111 012 4888875432
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
. ...++...+.+++ ||+++++-.
T Consensus 110 -----~---~~~~~~a~~~l~~---~G~iv~~G~ 132 (172)
T d1h2ba2 110 -----S---QATVDYTPYLLGR---MGRLIIVGY 132 (172)
T ss_dssp -----C---HHHHHHGGGGEEE---EEEEEECCC
T ss_pred -----c---chHHHHHHHHHhC---CCEEEEEeC
Confidence 2 2457888899999 999998763
|
| >d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.15 E-value=0.22 Score=30.35 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=38.1
Q ss_pred CcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 42 GIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 42 ~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+.|..|.. +...|+..||.++++ ....+.|.|-.|...|-+++.+
T Consensus 6 ~~l~~lg~-~~~~tA~~LA~kl~v---pKk~iNr~LYsL~~kgkl~k~~ 50 (59)
T d2gxba1 6 KFLEELGE-GKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEA 50 (59)
T ss_dssp HHHHHHCT-TCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHhcCC-ccchhHHHHHHHhCC---cHHHHHHHHHHHHHccchhhcC
Confidence 34556654 379999999999999 4688999999999999999986
|
| >d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ReutB4095-like domain: Putative DNA-binding protein ReutB4095 species: Ralstonia eutropha [TaxId: 106590]
Probab=89.01 E-value=0.32 Score=31.35 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+++-|..-|+++.++ .-+.|+|.|..|.+.|+++-.-. ++| .+.=++|+.+..++.
T Consensus 22 g~~WSLaklsKra~~---PMS~LRR~LTqL~~aGl~~t~~~-edG-~G~A~Lt~~G~~lca 77 (81)
T d2obpa1 22 ATPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSVE-ADG-RGHASLTQEGAALAA 77 (81)
T ss_dssp CCCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC-TTS-CEEEEECHHHHHHHH
T ss_pred CCCccHHHHHhhcCC---cHHHHHHHHHHHhhcCceeeeec-cCC-cceeeccHHHHHHHH
Confidence 369999999999999 46899999999999999865431 222 677899999887653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.76 E-value=0.1 Score=40.35 Aligned_cols=90 Identities=17% Similarity=0.111 Sum_probs=58.3
Q ss_pred cCCCCEEEEeCC--CCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCe-EEEeCCCCCC------CCCccEEEec
Q 018116 193 FEGLGSIVDVGG--GNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENL-KYIAGDMFQY------IPPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri-~~~~~D~~~~------~p~~D~i~~~ 260 (360)
+.++.+||-.|+ |.|..+..+++.. ++++++++. ++-.+.+++ .+.+ ++...|+.+. ..++|+|+..
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 104 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence 567889999995 5777888888876 678888876 655555543 2211 1111222111 1259998864
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
- . ...++...++|+| +|+++.+-
T Consensus 105 ~-----g----~~~~~~~~~~l~~---~G~iv~~G 127 (174)
T d1yb5a2 105 L-----A----NVNLSKDLSLLSH---GGRVIVVG 127 (174)
T ss_dssp C-----H----HHHHHHHHHHEEE---EEEEEECC
T ss_pred c-----c----HHHHHHHHhccCC---CCEEEEEe
Confidence 2 1 1357888899999 99999874
|
| >d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal domain of RPA32 domain: C-terminal domain of RPA32 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.74 E-value=0.2 Score=32.23 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 52 RPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 52 ~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
.++++.||++++ ++ +..-+..-++.|...|++--+-+ +++|..|.
T Consensus 22 eGi~~~el~~~l~~~---~~~~i~~aid~L~~eG~IYsTiD-----ddHfkstd 67 (69)
T d1dpua_ 22 EGLNFQDLKNQLKHM---SVSSIKQAVDFLSNEGHIYSTVD-----DDHFKSTD 67 (69)
T ss_dssp TTEEHHHHHHHSTTS---CHHHHHHHHHHHHHTTSEEECSS-----TTEEEESS
T ss_pred cCcCHHHHHHHccCC---CHHHHHHHHHHHHhCCceecccc-----cchhcccC
Confidence 689999999998 78 46889999999999999987763 57787653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.31 E-value=0.72 Score=33.40 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=52.5
Q ss_pred EEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCccEEEeccccccCC
Q 018116 198 SIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY-------IPPADAYFFKLVFHAFG 267 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~-------~p~~D~i~~~~~lh~~~ 267 (360)
+|+=+|+ |.++..+++.+ .+..++++|. ++.++.+...-.+.++.||...+ ...+|.+++. .+
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t~ 74 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV-----TG 74 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----CS
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc-----CC
Confidence 3555554 77777777765 3678999999 88877665433678899998762 2368888763 23
Q ss_pred hhHHHHHHHHHHHhccC
Q 018116 268 DEDCLKILKKCREAIAG 284 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p 284 (360)
+++.-.+.....+.+.+
T Consensus 75 ~d~~N~~~~~~~k~~~~ 91 (132)
T d1lssa_ 75 KEEVNLMSSLLAKSYGI 91 (132)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 33333345556666777
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=87.52 E-value=2.5 Score=31.83 Aligned_cols=95 Identities=9% Similarity=-0.027 Sum_probs=56.4
Q ss_pred cCCCCEEEEeCCCCc-hHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe---CCCC-CC------CCCccEEEec
Q 018116 193 FEGLGSIVDVGGGNG-GFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIA---GDMF-QY------IPPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~---~D~~-~~------~p~~D~i~~~ 260 (360)
.++..+||=+|+|.+ ..+..+++..-..+++++|. ++-++.+++..--.++. .|.. .. ..++|+++-.
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~ 105 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC 105 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEEC
T ss_pred CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeee
Confidence 677899999999885 45566777777778999998 66666665422222221 1111 00 1258988754
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
-- . ...+..+...+++ ||.+++.-...
T Consensus 106 ~G-----~---~~~~~~a~~~~~~---g~~~~~~~g~~ 132 (175)
T d1cdoa2 106 VG-----N---VGVMRNALESCLK---GWGVSVLVGWT 132 (175)
T ss_dssp SC-----C---HHHHHHHHHTBCT---TTCEEEECSCC
T ss_pred cC-----C---HHHHHHHHHHhhC---CCcceeEEEec
Confidence 32 1 2346666776676 55555544433
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=87.49 E-value=0.8 Score=32.99 Aligned_cols=81 Identities=14% Similarity=0.148 Sum_probs=54.7
Q ss_pred CCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCccEEEeccccccCChhHHHHHH
Q 018116 204 GGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY-------IPPADAYFFKLVFHAFGDEDCLKIL 275 (360)
Q Consensus 204 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~-------~p~~D~i~~~~~lh~~~~~~~~~~L 275 (360)
||.|..+..+++.+.+..++++|. +...+.+. ...+.++.||..++ ...++.+++.. -+|.....+.
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~-~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~----~~d~~n~~~~ 80 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVL-RSGANFVHGDPTRVSDLEKANVRGARAVIVNL----ESDSETIHCI 80 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH-HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC----SSHHHHHHHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH-hcCccccccccCCHHHHHHhhhhcCcEEEEec----cchhhhHHHH
Confidence 567889999999988878888888 76666554 45688999998763 23688877632 1344444444
Q ss_pred HHHHHhccCCCCCcEEEE
Q 018116 276 KKCREAIAGNGERGKVLI 293 (360)
Q Consensus 276 ~~~~~~L~p~~~gG~lli 293 (360)
..+ +.+.| ..+++.
T Consensus 81 ~~~-r~~~~---~~~iia 94 (129)
T d2fy8a1 81 LGI-RKIDE---SVRIIA 94 (129)
T ss_dssp HHH-HHHCS---SSCEEE
T ss_pred HHH-HHHCC---CceEEE
Confidence 444 45677 566555
|
| >d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Dlm-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.25 E-value=0.18 Score=30.03 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=44.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceec
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGL 102 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~ 102 (360)
|-+|++.|.++++|+...+|+..+++ ...-+.++|..|-..+=+...+ ...|++
T Consensus 3 EQkILQVL~dagspvk~~ql~k~cqV---pkk~lNqVL~rlkke~kVsl~~------patW~l 56 (57)
T d1j75a_ 3 EQKILQVLSDDGGPVKIGQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPE------PATWSI 56 (57)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE------TTEEEE
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHCC---CHHHHHHHHHHHHhccccccCC------CccccC
Confidence 55677888887899999999999999 4678999999999888887776 455654
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=87.09 E-value=0.27 Score=37.80 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=50.1
Q ss_pred CEEEEeCCCCchHHHH--HHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEE------eCCCCCCCCCccEEEec
Q 018116 197 GSIVDVGGGNGGFSKI--ISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYI------AGDMFQYIPPADAYFFK 260 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~------~~D~~~~~p~~D~i~~~ 260 (360)
++|.=||+|.-+.+.+ |+++ +.+++++|. ++-++..+. .+..+.. ..|..+..+++|+|++.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 5788899987654433 4443 779999999 666655432 1111111 11111123579998874
Q ss_pred cccccCChhHHHHHHHHHHHhccC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAG 284 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p 284 (360)
- +......++++++..|++
T Consensus 80 v-----~~~~~~~~~~~i~~~l~~ 98 (184)
T d1bg6a2 80 V-----PAIHHASIAANIASYISE 98 (184)
T ss_dssp S-----CGGGHHHHHHHHGGGCCT
T ss_pred E-----chhHHHHHHHHhhhccCC
Confidence 2 455567889999999988
|
| >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator DR1159 species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.00 E-value=0.21 Score=38.52 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=47.3
Q ss_pred hCcchhhhhCC--CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 41 LGIADIIHSHG--RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 41 l~lf~~L~~~~--~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.++..|...+ .++|..+||+.+++ +...+.++++-|...|+|++....+|+-.-..++|+.|..+..
T Consensus 65 ~~vL~~L~~~~~~~~lt~~eLa~~l~i---~~~tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~~G~~l~~ 134 (172)
T d2fbka1 65 WDLLLTLYRSAPPEGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVT 134 (172)
T ss_dssp HHHHHHHHHHCCSSCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCcCHHHHHHHHCc---CHhHHHHHHHHHHhCCCeeeeccccchhhHHhhcCHHHHHHHH
Confidence 44445554322 35899999999999 5699999999999999999986322111123889999886654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=86.95 E-value=1.5 Score=31.50 Aligned_cols=85 Identities=9% Similarity=0.124 Sum_probs=51.1
Q ss_pred EEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCccEEEeccccccCC
Q 018116 198 SIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY-------IPPADAYFFKLVFHAFG 267 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~-------~p~~D~i~~~~~lh~~~ 267 (360)
+++=+|+ |.++..+++.+ .+..++++|. ++.++.++.. ....+.+|..++ ..++|.+++... +
T Consensus 2 ~~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~----~ 74 (134)
T d2hmva1 2 QFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVAIG----A 74 (134)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-CSEEEECCTTCTTHHHHHTGGGCSEEEECCC----S
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-CCcceeeecccchhhhccCCccccEEEEEcC----c
Confidence 3455555 56666666654 3678999999 8888888743 346677887663 235887665321 2
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 268 DEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
+++...+...+++.+ | ..+++.
T Consensus 75 ~~~~~~~~~~~~~~~-~---~~~iia 96 (134)
T d2hmva1 75 NIQASTLTTLLLKEL-D---IPNIWV 96 (134)
T ss_dssp CHHHHHHHHHHHHHT-T---CSEEEE
T ss_pred hHHhHHHHHHHHHHc-C---CCcEEe
Confidence 333334444444544 4 366654
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=85.90 E-value=0.36 Score=42.07 Aligned_cols=34 Identities=12% Similarity=0.310 Sum_probs=27.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHC-------CCCeEEEeec
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAF-------PGIKCTVLDL 227 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~ 227 (360)
++..+|||+|+|+|.++..+++.+ ..+++..++.
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~ 118 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEI 118 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECC
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEecc
Confidence 456789999999999998887754 2446888888
|
| >d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.97 E-value=0.3 Score=31.55 Aligned_cols=62 Identities=11% Similarity=0.131 Sum_probs=48.4
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
.+-.|.+.|... ++.++-.||..+|++ ...-+.+.|-.|...|-+.+.+. ++..|.++....
T Consensus 6 ~eekI~~~L~~~-g~~~Al~iak~lGl~--kakeVN~~LY~L~k~g~v~k~~~----tPP~W~L~~~~~ 67 (73)
T d1xmka1 6 IKEKICDYLFNV-SDSSALNLAKNIGLT--KARDINAVLIDMERQGDVYRQGT----TPPIWHLTDKKR 67 (73)
T ss_dssp HHHHHHHHHHHT-CCEEHHHHHHHHCGG--GHHHHHHHHHHHHHTTSEEEECS----SSCEEEECHHHH
T ss_pred HHHHHHHHHHHc-CCchHHHHHHHhCCC--cHHHHhHHHHHHHHCCCeecCCC----CCCceeeecchh
Confidence 456788888775 799999999999993 11359999999999999998862 245788877543
|
| >d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PH0730 N-terminal domain-like domain: Hypothetical protein PH0730 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=84.80 E-value=0.49 Score=30.17 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
.|+.-..||+.+++ .++.++-.++.|.+.|+++... ..-.+|+.|..+.
T Consensus 16 qPiGRr~La~~L~l---~Er~vRte~~~Lk~~gLI~~~~-------~Gm~lTe~G~~~l 64 (69)
T d2p8ta1 16 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSKQ-------RGHFLTLKGKEIR 64 (69)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC---------CEEECHHHHHHH
T ss_pred CCccHHHHHHHcCC---cHHHHHHHHHHHHHCCCeeeeC-------CCCEECHhHHHHH
Confidence 69999999999999 7899999999999999999985 6778888887554
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.45 E-value=1.1 Score=37.41 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=50.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C---CCccEEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---I---PPADAYF 258 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~---p~~D~i~ 258 (360)
..++.+|||+.+|.|+-+..++... +..+++++|. +.-++.+++ ..++.+...|+... . ..||.|+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 4567899999999999888888764 4678999998 655554432 56788888887651 1 2589988
Q ss_pred e
Q 018116 259 F 259 (360)
Q Consensus 259 ~ 259 (360)
+
T Consensus 172 ~ 172 (293)
T d2b9ea1 172 L 172 (293)
T ss_dssp E
T ss_pred e
Confidence 7
|
| >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Probable transcription regulator BT4300, C-terminal domain species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=82.22 E-value=0.55 Score=30.40 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=31.8
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 53 PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 53 ~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++|-+|||+.+|+ ....+.|.|..|...|+++...
T Consensus 27 ~lt~~elA~~lg~---sr~tvsr~l~~l~~~g~I~~~~ 61 (73)
T d1zyba1 27 KVKMDDLARCLDD---TRLNISKTLNELQDNGLIELHR 61 (73)
T ss_dssp ECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSCEEET
T ss_pred ecCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 6799999999999 5689999999999999998764
|
| >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcription factor E/IIe-alpha, N-terminal domain domain: Transcription factor E/IIe-alpha, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.17 E-value=0.28 Score=32.92 Aligned_cols=47 Identities=26% Similarity=0.415 Sum_probs=38.4
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
..|++.|...++.+|=++||+.+|+ +...+++.|..|...|++....
T Consensus 21 ~~v~~~L~~~~~evtDe~iA~~tgi---~in~VRk~Ly~L~~~~L~~y~R 67 (88)
T d1q1ha_ 21 IDVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYRK 67 (88)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHhccCcCCHHHHHHHhCC---cHHHHHHHHHHHHhCCceEEEE
Confidence 3467766532358999999999999 6789999999999999997654
|
| >d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Heat-inducible transcription repressor HrcA, N-terminal domain domain: Heat-inducible transcription repressor HrcA, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=81.31 E-value=1.1 Score=30.00 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
+.|.+..+|++..+++= ++.-++..|..|...|++++... ..+...|..+-
T Consensus 21 g~Pv~s~~i~~~~~l~~-S~aTIRn~m~~LE~~G~l~~~h~-----s~GriPT~~g~ 71 (87)
T d1stza1 21 KKPVSSQRVLEVSNIEF-SSATIRNDMKKLEYLGYIYQPHT-----SAGRIPTDKGL 71 (87)
T ss_dssp CSCBCHHHHHHHSCCCS-CHHHHHHHHHHHHHTTSEECCSS-----CSCBEECHHHH
T ss_pred CCccCHHHHHHHhCCCC-CHHHHHHHHHHHHHCCcccCCCC-----CCCCcccHHHH
Confidence 47999999999988731 35789999999999999999764 34455666553
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.24 E-value=0.67 Score=35.69 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=58.0
Q ss_pred cCCCCEEEEeC--CCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC---C-CC-CccEEEeccc
Q 018116 193 FEGLGSIVDVG--GGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ---Y-IP-PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG--~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~---~-~p-~~D~i~~~~~ 262 (360)
..++.+||=-| +|.|.+++.+++.. ++++++... ++-.+.+++ .+.+--...+..+ . -+ ++|+|+-.-
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~v- 106 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPV- 106 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECS-
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcC-
Confidence 34567888887 45667889999886 778777765 444443332 1111111111111 1 12 599877532
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCc
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKED 303 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~ 303 (360)
.. ..+.+..+.|+| ||+++++-...+....
T Consensus 107 ----gg----~~~~~~l~~l~~---~Griv~~G~~~g~~~~ 136 (176)
T d1xa0a2 107 ----GG----RTLATVLSRMRY---GGAVAVSGLTGGAEVP 136 (176)
T ss_dssp ----TT----TTHHHHHHTEEE---EEEEEECSCCSSSCCC
T ss_pred ----Cc----hhHHHHHHHhCC---CceEEEeecccCcccC
Confidence 12 247788899999 9999998876555443
|
| >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Catabolite gene activator protein (CAP), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.72 E-value=0.54 Score=29.94 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=32.3
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 53 PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 53 ~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
|+|-+|||..+|+ ....+.|.|+.|...|+++..+
T Consensus 29 ~lt~~~lA~~~G~---sRetvsr~L~~l~~~glI~~~~ 63 (69)
T d1i5za1 29 KITRQEIGQIVGC---SRETVGRILKMLEDQNLISAHG 63 (69)
T ss_dssp ECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC
Confidence 6999999999999 5689999999999999999874
|
| >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Putative transcriptional regulator RHA1 ro03477 species: Rhodococcus sp. RHA1 [TaxId: 101510]
Probab=80.18 E-value=1.7 Score=27.43 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=38.8
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
..|+..+..|-|.- |..++..+||+.+|+ +..-+++-|+.|.+.|+++...
T Consensus 9 ~~l~~~I~~g~~~~----G~~l~~~~La~~~~v---Sr~tvr~Al~~L~~~Gli~~~~ 59 (69)
T d2hs5a1 9 GILRDAIIDGTFRP----GARLSEPDICAALDV---SRNTVREAFQILIEDRLVAHEL 59 (69)
T ss_dssp HHHHHHHHHTSSCT----TCEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHcCCCCC----cCccCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEc
Confidence 34444444454322 356789999999999 5688999999999999999876
|
| >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Transcriptional regulator PG0396, C-terminal domain species: Porphyromonas gingivalis [TaxId: 837]
Probab=80.12 E-value=0.83 Score=29.94 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
-+.|-+|||..+|+ ....+.|.|..|...|+++..+
T Consensus 28 ~~lt~~eLA~~~G~---sretvsr~L~~l~~~glI~~~~ 63 (81)
T d2gaua1 28 IYLSREELATLSNM---TVSNAIRTLSTFVSERMLALDG 63 (81)
T ss_dssp CCCCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEET
T ss_pred ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 48999999999999 4588999999999999999875
|
| >d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Cell cycle transcription factor e2f-dp domain: Cell cycle transcription factor E2F-4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.09 E-value=0.61 Score=29.55 Aligned_cols=37 Identities=16% Similarity=0.359 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..+..+.|..+++. ..+++..+..+|.++|++++..
T Consensus 24 ~~~~L~~aa~~L~v~--~kRRiYDI~NVLe~igli~K~~ 60 (67)
T d1cf7a_ 24 GVLDLKLAADTLAVR--QKRRIYDITNVLEGIGLIEKKS 60 (67)
T ss_dssp TEEEHHHHHHHTTTC--CTHHHHHHHHHHHHHTSEEEEE
T ss_pred CeeeHHHHHHHhcCc--chhhHHHHHHHHhhhhhhhccc
Confidence 678999999999995 2599999999999999999986
|