Citrus Sinensis ID: 018130

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
METGTSSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEFDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVDKSSGIRKAMDMGTLFDSLSRKGFMATRRRSKSSNKNEKSYLRYSARFRRFPSLEIEVSD
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccHHccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccccccHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHccccEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccEEEEEEccccEEEEEccccccHHHccccccccccccEEEccccccEEccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccEcccccccccccc
Coil and Loop (DISEMBL)
metgtsskedapvfldrssrvtrGKRMNKllddeneedEAFWNQDalkeeenddnyeEEQEIAdefdsdfdedepepdeevenEVDERVWtkkrlifpgkpltkkkkKKKILSkldspdkdvksneqsilpenhdvpndvegeriirkSTRTAVVVRQAERDAIRAALQATMKpikrkkegeEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAvytgpqlrylskdgysylefskgvsfqselsttsvpyperavcavtglpakyrdpktglpyaTKEAFKIIRERFVDKSSGIRKAMDMGTLFDSlsrkgfmatrrrskssnknekSYLRYSARfrrfpsleievsd
Flexible Loop (DISEMBL)
metgtsskedapvfldrssrvtrgkrmnkllddeneedeAFWNQDALKEEENDDNYEEEQEIADEfdsdfdedepepdeevenevdervwtkkrlifpgkpltkkkkkkkilskldspdkdvksneqsilpenhdvpndvegeriirkstrtavvvrQAERDAIRAalqatmkpikrkkegeekrmTQEEMLLEAAQTEIMNLRNLERVLAREEEVKkraivhkavytgpqlrylSKDGYSYLEFSKGVSFQselsttsvpypeRAVCAVtglpakyrdpktglpyaTKEAFKIIRerfvdkssgirkamdmgtlfdslsrkgfmatrrrskssnkneksylrysarfrrfpsleievsd
Low Complexity Region (SEG)
METGTSSKEDAPVFLDRSSRVTRGKRMNKLLddeneedeAFWNQDALKeeenddnyeeeqeIAdefdsdfdedepepdeevenevdeRVWTKKRLIFPGkpltkkkkkkkilskldspdkdVKSNEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVDKSSGIRKAMDMGTLFDSLSRKGFMATrrrskssnkneksYLRYSARFRRFPSLEIEVSD
Disordered region (IsUnstruct)
*****************************************************************************************WT***LI********************************************************AVVV******************************************EIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVDKSSGIR******TL*********************************************
Disordered Region (DISOPRED)
************************KRMNKLLDDENEEDEAFWNQDALKEEEND********************************************************************************************************************************************************************************PQLRYLSKDGYSYLEFSKGVSFQSEL******YPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERF***************************************************FPSLE*****
Disordered Region (DISEMBL)
***********PVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALK*************IADEF********************ERVWTKKRLIFPGKP************************EQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPI***********TQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVDKSSGIRKAMDMGTLFDSLSRKGF***************SYLRYSARFRRFPSLEIEVSD
Disordered Region (DISPRO)
***********PVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALK********************************************K******************************************************************************************KRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVDKSSGIR**M***TLF**LSRK*******************************LEI****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METGTSSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEFDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVDKSSGIRKAMDMGTLFDSLSRKGFMATRRRSKSSNKNEKSYLRYSARFRRFPSLEIEVSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
Q5E9F6	364	Vacuolar protein sorting-	yes	no	0.741	0.733	0.312	5e-16
Q5R5V9	364	Vacuolar protein sorting-	yes	no	0.741	0.733	0.312	1e-15
Q15906	364	Vacuolar protein sorting-	yes	no	0.741	0.733	0.312	2e-15
Q62481	368	Vacuolar protein sorting-	yes	no	0.744	0.728	0.303	5e-15
Q6GNJ8	353	Vacuolar protein sorting-	N/A	no	0.733	0.747	0.290	6e-15
Q9VKM6	351	Vacuolar protein sorting-	yes	no	0.722	0.740	0.275	1e-13
Q9P790	316	SWR complex protein 2 OS=	yes	no	0.325	0.370	0.333	4e-06

>sp|Q5E9F6|VPS72_BOVIN Vacuolar protein sorting-associated protein 72 homolog OS=Bos taurus GN=VPS72 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 141/333 (42%), Gaps = 66/333 (19%)

Query: 17  RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
           R+ R T G R++ LL+ E EEDE +        EE  DD Y+ +Q +  DE DSDFD   
Sbjct: 7   RAPRKTAGNRLSGLLEKE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65

Query: 72  EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
            DEP  D E E    +R    K    P K L    + +K+ +   S  K     E+++LP
Sbjct: 66  GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVSTPAGSSQK--TREEKALLP 119

Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
            E  D   D       RKS R +    +  R       +   +  +RK    E+ +TQEE
Sbjct: 120 LELQDDGTDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171

Query: 191 MLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLS-------------- 236
           +L EA  TE +NLR+LE    R E  KK+ +  K    GP + Y S              
Sbjct: 172 LLREAKITEELNLRSLE-TYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEE 230

Query: 237 -----------------------------KDGYSYLEFSKGVSFQSELSTTSVP-YPERA 266
                                        +   +++ FS   +F+        P  P R 
Sbjct: 231 NVDVEGLDPAPMASALAARAGTGPVIPPARCSRTFITFSDDATFEEWFPQGRTPKIPVRE 290

Query: 267 VCAVTGLPAKYRDPKTGLPYATKEAFKIIRERF 299
           VC VT  PA YRDP T +PYAT  AFKIIRE +
Sbjct: 291 VCPVTHRPALYRDPVTDIPYATARAFKIIREAY 323

Could be a DNA-binding transcriptional regulator. May be involved in chromatin modification and remodeling.
Bos taurus (taxid: 9913)

>sp|Q5R5V9|VPS72_PONAB Vacuolar protein sorting-associated protein 72 homolog OS=Pongo abelii GN=VPS72 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 142/333 (42%), Gaps = 66/333 (19%)

Query: 17  RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
           R+ R T G R++ LL+ E EEDE +        EE  DD Y+ +Q +  DE DSDFD   
Sbjct: 7   RAPRKTAGNRLSGLLEAE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65

Query: 72  EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
            DEP  D E E    +R    K    P K L    + +K+ +   S  K     E+++LP
Sbjct: 66  GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVSTPAGSSQK--AREEKALLP 119

Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
            E  D  +D       RKS R +    +  R       +   +  +RK    E+ +TQEE
Sbjct: 120 LELQDDGSDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171

Query: 191 MLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLS-------------- 236
           +L EA  TE +NLR+LE    R E  KK+ +  K    GP + Y S              
Sbjct: 172 LLREAKITEELNLRSLE-TYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEE 230

Query: 237 -----------------------------KDGYSYLEFSKGVSFQSELSTTSVP-YPERA 266
                                        +   +++ FS   +F+        P  P R 
Sbjct: 231 NVDIEGLDPAPSASALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVRE 290

Query: 267 VCAVTGLPAKYRDPKTGLPYATKEAFKIIRERF 299
           VC VT  PA YRDP T +PYAT  AFKIIRE +
Sbjct: 291 VCPVTHRPALYRDPVTDIPYATARAFKIIREAY 323

Could be a DNA-binding transcriptional regulator. May be involved in chromatin modification and remodeling.

Pongo abelii (taxid: 9601)

>sp|Q15906|VPS72_HUMAN Vacuolar protein sorting-associated protein 72 homolog OS=Homo sapiens GN=VPS72 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 142/333 (42%), Gaps = 66/333 (19%)

Query: 17  RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
           R+ R T G R++ LL+ E EEDE +        EE  DD Y+ +Q +  DE DSDFD   
Sbjct: 7   RAPRKTAGNRLSGLLEAE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65

Query: 72  EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
            DEP  D E E    +R    K    P K L    + +K+ +   S  K     E+++LP
Sbjct: 66  GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVNTPAGSSQK--AREEKALLP 119

Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
            E  D  +D       RKS R +    +  R       +   +  +RK    E+ +TQEE
Sbjct: 120 LELQDDGSDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171

Query: 191 MLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLS-------------- 236
           +L EA  TE +NLR+LE    R E  KK+ +  K    GP + Y S              
Sbjct: 172 LLREAKITEELNLRSLE-TYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEE 230

Query: 237 -----------------------------KDGYSYLEFSKGVSFQSELSTTSVP-YPERA 266
                                        +   +++ FS   +F+        P  P R 
Sbjct: 231 NVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVRE 290

Query: 267 VCAVTGLPAKYRDPKTGLPYATKEAFKIIRERF 299
           VC VT  PA YRDP T +PYAT  AFKIIRE +
Sbjct: 291 VCPVTHRPALYRDPVTDIPYATARAFKIIREAY 323

Could be a DNA-binding transcriptional regulator. May be involved in chromatin modification and remodeling.

Homo sapiens (taxid: 9606)

>sp|Q62481|VPS72_MOUSE Vacuolar protein sorting-associated protein 72 homolog OS=Mus musculus GN=Vps72 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 145/336 (43%), Gaps = 68/336 (20%)

Query: 17  RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
           R+ R T G R++ LL+ E EEDE +        EE  DD Y+ +Q +  DE DSDFD   
Sbjct: 7   RAPRKTAGNRLSGLLEAE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65

Query: 72  EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
            DEP  D E E    +R    K    P K L    + +K+ +   S  K     E+++LP
Sbjct: 66  GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVSTPASSSQK--AREEKTLLP 119

Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
            E  D  +D       RKS R +    +  R       +   +  +RK    E+ +TQEE
Sbjct: 120 LELQDDGSDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171

Query: 191 MLLEAAQTEIMNLRNL---ERVLA-------REEEVKKRAIVHKAVYT------GPQLRY 234
           +L EA  TE +NLR+L   ER+ A       ++ +     I + +V        GP+   
Sbjct: 172 LLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEEN 231

Query: 235 LSKDGY------------------------------SYLEFSKGVSFQSELSTTSVP-YP 263
           +  +G                               +++ FS   +F+        P  P
Sbjct: 232 VDVEGLDPAPTASALAPHAGTGTGAAAATPPAHCSRTFITFSDDATFEEWFPQGRPPKVP 291

Query: 264 ERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERF 299
            R VC VT  PA YRDP T +PYAT  AFKIIRE +
Sbjct: 292 VREVCPVTHRPALYRDPVTDIPYATARAFKIIREAY 327

Could be a DNA-binding transcriptional regulator. May be involved in chromatin modification and remodeling.

Mus musculus (taxid: 10090)

>sp|Q6GNJ8|VPS72_XENLA Vacuolar protein sorting-associated protein 72 homolog OS=Xenopus laevis GN=vps72 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 141/324 (43%), Gaps = 60/324 (18%)

Query: 17  RSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIA-DEFDSDFDEDEP 75
           R+ R T G RM+ LL  E E+D          EE  D+ Y E++  + DE DSDFD DE 
Sbjct: 7   RAPRKTAGNRMSGLLQAEEEDDFYKTTYGGFNEESGDEEYNEDRSASEDEVDSDFDIDEG 66

Query: 76  EPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKK-KILSKLDSPDKDVKSNEQSILPENH 134
             DE   +  ++    K+R++      TK  K+  ++L       +   +      PE  
Sbjct: 67  --DEPTSDHEEDEPKKKRRVV------TKAYKEPIQLLKPKPKKPEAPPNTAAKSRPEKP 118

Query: 135 DVPND--VEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEEML 192
             P D  V+  + +R+ST       +  R       +  ++  K+K    ++ +TQEE+L
Sbjct: 119 QEPPDDTVDSRKQMRQSTT------EHTRQTFLRVKERQIQSKKKKGPHLDRPLTQEELL 172

Query: 193 LEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLS---------------- 236
            EA  TE +N+R+LE    R E  +K+ +  K    GP +RY S                
Sbjct: 173 EEAKITEEINIRSLEN-YERLEADRKKQVHKKRRCAGPTIRYHSMVMPLITELRMKEENV 231

Query: 237 ----------------KDGYSYLEFSKGVSFQ-----SELSTTSVPYPERAVCAVTGLPA 275
                           K   S++ FS   +F+     S+    SV    R VC VT  PA
Sbjct: 232 DVEGLDHEQTDRTHAGKCSRSFITFSDDETFERFFPRSKRGKFSV----RDVCPVTHKPA 287

Query: 276 KYRDPKTGLPYATKEAFKIIRERF 299
            YRDP T +PY   +AFKIIR+ +
Sbjct: 288 LYRDPITDIPYYNSKAFKIIRDAY 311

Could be a DNA-binding transcriptional regulator. May be involved in chromatin modification and remodeling.

Xenopus laevis (taxid: 8355)

>sp|Q9VKM6|VPS72_DROME Vacuolar protein sorting-associated protein 72 homolog OS=Drosophila melanogaster GN=YL-1 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 137/327 (41%), Gaps = 67/327 (20%)

Query: 17  RSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEFDSDF---DED 73
           RS R   G ++  LL++E E+D    +    +E+E D  YE++ E  D  DSDF   + D
Sbjct: 5   RSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDEND 64

Query: 74  EPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILPEN 133
           EP  D+E   E                   KK+K+  + +K     K     E    P  
Sbjct: 65  EPVSDQEEAPE-------------------KKRKRGVVNTKAYKETKPAVKKETKATPAL 105

Query: 134 HDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAA----LQATMKPIK----------RKK 179
           H       G  + ++  R    V  + R +IR +     QAT   +K          +K 
Sbjct: 106 H---KKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKV 162

Query: 180 EGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDG 239
             E+   TQEE+L EA  TE  N ++LE+    E E KK++   K  ++GP +RY S   
Sbjct: 163 RVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELE-KKKSRPTKRTFSGPTIRYHSLTM 221

Query: 240 YSYLEFSKGVS---------------------------FQSELSTTSVPYPERAVCAVTG 272
            +  + ++G +                           FQS     + P     +C +T 
Sbjct: 222 PAMRKPTRGANPAVDSKDLAGKCERTFVTIENDFNDKVFQSLFRHKAPPKASNGICPITR 281

Query: 273 LPAKYRDPKTGLPYATKEAFKIIRERF 299
           LPA+Y DP T  PY + +AFKI+RE +
Sbjct: 282 LPARYFDPITQQPYYSIQAFKILREAY 308

Part of the Tip60 chromatin-remodeling complex which is involved in DNA repair. Upon induction of DNA double-strand breaks, this complex acetylates phosphorylated H2AV in nucleosomes and exchanges it with unmodified H2AV.

Drosophila melanogaster (taxid: 7227)

>sp|Q9P790|VPS72_SCHPO SWR complex protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swc2 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 15/132 (11%)

Query: 186 MTQEEMLLEAAQTEIMNLRNLERVLAREEE----VKKRAIVHKAVYTGPQLRYLSK---- 237
           MTQ++   EAA+TE  NL +L   +  EE+    +K+ A  H+ +   P L+++SK    
Sbjct: 178 MTQQQRFEEAAKTEAQNLSSLRNYVHLEEQRRLRLKRNAAKHRQL-REPILKFISKTIST 236

Query: 238 -DGYSYLEFSKGVSFQSELSTTSVPY--PE-RAV-CAVTGLPAKYRDPKTGLPYATKEAF 292
            DG     +      +  L  ++ P   P+ RAV C +TG PA Y DP T LP +  +AF
Sbjct: 237 EDGREASNYYVA-PLEHPLCHSAPPLQMPQHRAVECVITGKPAIYLDPVTQLPISNVQAF 295

Query: 293 KIIRERFVDKSS 304
           + +RE +  + S
Sbjct: 296 QQVREVYNQRYS 307

Participates in the catalytic exchange of histone H2A for the H2A variant pht1, an euchromatin-specific factor, leading to chromatin remodeling and changes in transcription of targeted genes.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
225454872	356	PREDICTED: vacuolar protein sorting-asso	0.983	0.994	0.760	1e-128
312283487	366	unnamed protein product [Thellungiella h	0.958	0.942	0.684	1e-127
255557925	357	DNA binding protein, putative [Ricinus c	0.980	0.988	0.752	1e-125
297827167	364	DNA binding protein [Arabidopsis lyrata	0.95	0.939	0.674	1e-124
449451840	356	PREDICTED: vacuolar protein sorting-asso	0.983	0.994	0.730	1e-123
79568513	365	vacuolar protein sorting-associated prot	0.944	0.931	0.673	1e-120
110743723	365	hypothetical protein [Arabidopsis thalia	0.944	0.931	0.670	1e-119
356512253	355	PREDICTED: vacuolar protein sorting-asso	0.961	0.974	0.684	1e-119
4415919	379	hypothetical protein [Arabidopsis thalia	0.944	0.897	0.647	1e-117
413941583	360	vacuolar protein sorting protein 72 [Zea	0.975	0.975	0.593	1e-109

>gi|225454872|ref|XP_002275587.1| PREDICTED: vacuolar protein sorting-associated protein 72 homolog [Vitis vinifera] gi|297737375|emb|CBI26576.3| unnamed protein product [Vitis vinifera]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 270/355 (76%), Positives = 311/355 (87%), Gaps = 1/355 (0%)

Query: 6   SSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADE 65
           +SK + PV LDR+SR+TRGKRMNKLLD+E E+D+ FWNQDALKEEEND NYEEE E+ADE
Sbjct: 3   TSKAEEPVVLDRASRITRGKRMNKLLDEEVEQDDYFWNQDALKEEENDVNYEEEAEVADE 62

Query: 66  FDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSN 125
           FDSDFDEDEPEPDEEVEN+ D+R  TKKRL +PGK L KKKKKK +LS L+   KD K++
Sbjct: 63  FDSDFDEDEPEPDEEVENDADDRPRTKKRLSYPGKTLAKKKKKK-VLSNLERVTKDEKTS 121

Query: 126 EQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKR 185
            +S +PEN++VP+D+E ERI+RKSTRT+V+VRQAERDAIRAALQATMKPIKRKKEGEEK+
Sbjct: 122 PESTVPENNEVPDDLEVERIVRKSTRTSVIVRQAERDAIRAALQATMKPIKRKKEGEEKK 181

Query: 186 MTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEF 245
           MTQEEMLLEAAQTEI+NLRNLERVLAREEEVKKRAIVHK+VY+GPQ+RY SK+G SYLEF
Sbjct: 182 MTQEEMLLEAAQTEIINLRNLERVLAREEEVKKRAIVHKSVYSGPQIRYSSKNGCSYLEF 241

Query: 246 SKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVDKSSG 305
           SKG+SFQSELS TSVPYPE+AVCAVTGLPAKYRDPKTGLPYATKEAF+IIRERF ++++ 
Sbjct: 242 SKGLSFQSELSATSVPYPEKAVCAVTGLPAKYRDPKTGLPYATKEAFRIIRERFSEENNR 301

Query: 306 IRKAMDMGTLFDSLSRKGFMATRRRSKSSNKNEKSYLRYSARFRRFPSLEIEVSD 360
             K MDMG LFDS+S +GF   R+RS +S KNE SY RY ARFR  P LEIE SD
Sbjct: 302 GPKKMDMGVLFDSISAQGFSGRRKRSLTSKKNETSYFRYLARFRTIPVLEIEDSD 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283487|dbj|BAJ34609.1| unnamed protein product [Thellungiella halophila]

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/352 (68%), Positives = 282/352 (80%), Gaps = 7/352 (1%)

Query: 6   SSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADE 65
           S KE+  VFLDR++R TRGKRM KLLDDE EEDE FWNQ+ALKEEE+DDNYE E E+ADE
Sbjct: 3   SDKEEQMVFLDRTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDNYEAEAEVADE 62

Query: 66  FDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDS------PD 119
           FDSDF++DEPEPD   ENE +ER   KKRLI+PGK   KKKKKKK++S L+       P 
Sbjct: 63  FDSDFNDDEPEPDAVAENEKEERDMPKKRLIYPGKTAPKKKKKKKLVSTLEDTLEGEKPG 122

Query: 120 KDVKSNEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKK 179
            +V   EQ    E ++   D+E E++IRKSTRT+V+VRQAERDA+RAA+QAT KPI+RKK
Sbjct: 123 DEVGDKEQD-GKEQNEAQEDMESEKVIRKSTRTSVIVRQAERDALRAAIQATTKPIQRKK 181

Query: 180 EGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDG 239
            GEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKK+AIVHK VY GPQ+RYLSKDG
Sbjct: 182 VGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKKAIVHKVVYKGPQIRYLSKDG 241

Query: 240 YSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERF 299
            +YLEF  G SF SELST SVPYPE+AVC +TGLPAKYRDPKTGLPYAT+EAFK IRERF
Sbjct: 242 CNYLEFCNGASFSSELSTKSVPYPEKAVCVITGLPAKYRDPKTGLPYATREAFKAIRERF 301

Query: 300 VDKSSGIRKAMDMGTLFDSLSRKGFMATRRRSKSSNKNEKSYLRYSARFRRF 351
           +D+ +G+RK M+MG LFD+L  KGF  T++R+K   K++      SARF RF
Sbjct: 302 MDEQNGLRKKMEMGDLFDTLVVKGFAVTQKRTKIPKKDKSFSHINSARFCRF 353

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557925|ref|XP_002519991.1| DNA binding protein, putative [Ricinus communis] gi|223540755|gb|EEF42315.1| DNA binding protein, putative [Ricinus communis]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 268/356 (75%), Positives = 307/356 (86%), Gaps = 3/356 (0%)

Query: 6   SSKEDAP-VFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIAD 64
           S +EDA  VFLDR+SR TRGKRMNKLLD+E EEDE FW+QDALKEEEND+NYE EQE+AD
Sbjct: 4   SKEEDASIVFLDRASRQTRGKRMNKLLDEEIEEDELFWSQDALKEEENDNNYEAEQEVAD 63

Query: 65  EFDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKS 124
           EFDSDFD+DE EPDEE E+   ER  TKKRLI+PGKP TKKKKKKK+LSKLD P KD K+
Sbjct: 64  EFDSDFDDDESEPDEEAEDVPSERKQTKKRLIYPGKPSTKKKKKKKVLSKLDRPSKDEKT 123

Query: 125 NEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEK 184
            E+S  PE+ DV +DVEGERI+RKSTRT+V+V+QAERDAIRAALQATMKPIKRKKEGEEK
Sbjct: 124 AEESSAPEHRDVSDDVEGERIVRKSTRTSVIVKQAERDAIRAALQATMKPIKRKKEGEEK 183

Query: 185 RMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLE 244
           RMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVY GPQ+RY SKDG SYLE
Sbjct: 184 RMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYNGPQIRYFSKDGCSYLE 243

Query: 245 FSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVDKSS 304
           F KGVSF+SE+S  SVPYPE+AVCA+TGLPAKYRDPKTGL YATKEAFKIIR+RFV++++
Sbjct: 244 F-KGVSFRSEISVASVPYPEKAVCAITGLPAKYRDPKTGLAYATKEAFKIIRKRFVEENT 302

Query: 305 GIRKAMDMGTLFDSLSRKGFMATRRRSKSSNKNEKSYLRYSARFRRFPSLEIEVSD 360
            I K MDMG L DSL+ KGFM  R+R  SSN+ +   L Y ++F + P++EI+ S+
Sbjct: 303 VI-KEMDMGALSDSLNGKGFMGRRKRMSSSNRRKMPNLLYLSQFGKAPTIEIDSSE 357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827167|ref|XP_002881466.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata] gi|297327305|gb|EFH57725.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/350 (67%), Positives = 279/350 (79%), Gaps = 8/350 (2%)

Query: 6   SSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADE 65
           S KE+  VFLDR++R TRGKRM KLLDDE EEDE FWNQ+ALKEEE+DD YE E+E+ADE
Sbjct: 3   SDKEEPMVFLDRTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDEYEAEREVADE 62

Query: 66  FDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKL-------DSP 118
           FDSDF++DEPEPD   +NE +ER   KKRLI+PGK  +KKKKKK  +          + P
Sbjct: 63  FDSDFNDDEPEPDAVAQNEKEERDLPKKRLIYPGKIASKKKKKKTKVVSKLQDIPGDEKP 122

Query: 119 DKDVKSNEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRK 178
            +++ S EQ    EN +   D+EGE++IRKSTRT+VVVRQAERDA+RAA+QAT KPI+RK
Sbjct: 123 GEELGSKEQDEKEEN-EAQEDMEGEKVIRKSTRTSVVVRQAERDALRAAIQATTKPIQRK 181

Query: 179 KEGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKD 238
           K GEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKK+AIVHKAVY GPQ+RY SKD
Sbjct: 182 KVGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKKAIVHKAVYKGPQIRYHSKD 241

Query: 239 GYSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRER 298
           G +YLEF  G SF SELST SVPYPE+A+C +TGLPAKYRDPKTGLPYAT++AFK IRER
Sbjct: 242 GCNYLEFCNGASFNSELSTKSVPYPEKALCVITGLPAKYRDPKTGLPYATRDAFKAIRER 301

Query: 299 FVDKSSGIRKAMDMGTLFDSLSRKGFMATRRRSKSSNKNEKSYLRYSARF 348
           F+D+  G+RK M+MG LFD+L  KGF   ++R+K    N+   LR SARF
Sbjct: 302 FMDEHDGLRKKMEMGDLFDTLIAKGFTVKQKRTKIPKSNKSFSLRSSARF 351

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451840|ref|XP_004143668.1| PREDICTED: vacuolar protein sorting-associated protein 72 homolog [Cucumis sativus]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 260/356 (73%), Positives = 298/356 (83%), Gaps = 2/356 (0%)

Query: 5   TSSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIAD 64
           +S +ED PVFLDRSSR+TRGKRM KLLD+E EEDE FWNQDAL+E+E DD YEEE E+ D
Sbjct: 3   SSKEEDVPVFLDRSSRMTRGKRMTKLLDEEAEEDELFWNQDALREDEVDDEYEEEPEVVD 62

Query: 65  EFDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKS 124
           EFDSDF+EDE EP+EE ENE DER   KKRLIFPGK  +K K KK+ +SK++ P KD  S
Sbjct: 63  EFDSDFNEDESEPEEEAENEADERPQMKKRLIFPGK-TSKNKNKKRAVSKVEKPSKDEAS 121

Query: 125 NEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEK 184
            +QS  PE+HD P+D E ER +RKSTRT+V+VRQAERDAIRAALQATMKPIKRK  GEEK
Sbjct: 122 TDQSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAALQATMKPIKRKNPGEEK 181

Query: 185 RMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLE 244
           +M+QEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVY GP+++YLS++G SYLE
Sbjct: 182 KMSQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYNGPRIQYLSRNGCSYLE 241

Query: 245 FSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVDKSS 304
           FSKG SFQ+ELSTTSVPYPE+AVC +TGLPAKYRDPKTGLPYATKEAFK IRERF D S+
Sbjct: 242 FSKGSSFQAELSTTSVPYPEKAVCVITGLPAKYRDPKTGLPYATKEAFKTIRERFADDST 301

Query: 305 GIRKAMDMGTLFDSLSRKGFMATRRRSKSSNKNEKSYLRYSARFRRFPSLEIEVSD 360
            + K MDMG LF SLS  GF A R+RS   NKNE SYLR+ +RFR+ P  + +VSD
Sbjct: 302 -VAKEMDMGELFASLSGNGFSARRKRSAPQNKNEMSYLRHFSRFRQIPVFDSDVSD 356

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79568513|ref|NP_181212.2| vacuolar protein sorting-associated protein 72 [Arabidopsis thaliana] gi|330254199|gb|AEC09293.1| vacuolar protein sorting-associated protein 72 [Arabidopsis thaliana]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/346 (67%), Positives = 274/346 (79%), Gaps = 6/346 (1%)

Query: 9   EDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEFDS 68
           E+  VFLDR++R TRGKRM KLLDDE EEDE FWNQ+ALKEEE+DD YE E+E+ADEFDS
Sbjct: 6   EEPMVFLDRTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDEYEAEREVADEFDS 65

Query: 69  DFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILS-KLDSPDKDVKSNEQ 127
           DF++DEPEPD    NE + R   KKRLI+PGK  +KKKKKK  +  +L+    D K  E+
Sbjct: 66  DFNDDEPEPDAVAVNEKELRDLPKKRLIYPGKTASKKKKKKTKVVSQLEYIPGDEKPGEE 125

Query: 128 -----SILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGE 182
                    E ++   D+EGE++IRKSTRT+VVVRQAERDA+RAA+QAT KPI+RKK GE
Sbjct: 126 LGNKEQEEKEENEAQEDMEGEKVIRKSTRTSVVVRQAERDALRAAIQATTKPIQRKKVGE 185

Query: 183 EKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSY 242
           EKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKK+AIVHKAVY GPQ+RY SKDG +Y
Sbjct: 186 EKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKKAIVHKAVYKGPQIRYHSKDGCNY 245

Query: 243 LEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVDK 302
           LEF  G SF SELST SVPYPE+AVC +TGLPAKYRDPKTGLPYAT++AFK IRERF+D+
Sbjct: 246 LEFCNGASFNSELSTKSVPYPEKAVCVITGLPAKYRDPKTGLPYATRDAFKAIRERFMDE 305

Query: 303 SSGIRKAMDMGTLFDSLSRKGFMATRRRSKSSNKNEKSYLRYSARF 348
             G+RK M+MG LFD+L  KGF   ++R+K    N+   LR SARF
Sbjct: 306 HDGLRKKMEMGDLFDTLVAKGFATKQKRTKIPKSNKSFSLRSSARF 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110743723|dbj|BAE99698.1| hypothetical protein [Arabidopsis thaliana]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/346 (67%), Positives = 274/346 (79%), Gaps = 6/346 (1%)

Query: 9   EDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEFDS 68
           E+  VFLDR++R TRGKRM KLLDDE EEDE FWNQ+ALKEEE+DD YE E+E+ADEFDS
Sbjct: 6   EEPMVFLDRTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDEYEAEREVADEFDS 65

Query: 69  DFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILS-KLDSPDKDVKSNEQ 127
           DF++DEPEPD    NE + R   KKRLI+PGK  +KKKKKK  +  +L+    D K  E+
Sbjct: 66  DFNDDEPEPDAVAVNEKELRDLPKKRLIYPGKTASKKKKKKTKVVSQLEYIPGDEKPGEE 125

Query: 128 -----SILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGE 182
                    E ++   D+EGE++IRKSTRT+VVVRQAERDA+RAA+QAT KPI+RKK GE
Sbjct: 126 LGNKEQEEKEENEAQEDMEGEKVIRKSTRTSVVVRQAERDALRAAIQATTKPIQRKKVGE 185

Query: 183 EKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSY 242
           EKR+TQEEMLLEAAQTEIMNLRNLERVLAREEEVKK+AIVHKAVY GPQ+RY SKDG +Y
Sbjct: 186 EKRVTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKKAIVHKAVYKGPQIRYHSKDGCNY 245

Query: 243 LEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVDK 302
           LEF  G SF SELST SVPYPE+AVC +TGLPAKYRDPKTGLPYAT++AFK IRERF+D+
Sbjct: 246 LEFCNGASFNSELSTKSVPYPEKAVCVITGLPAKYRDPKTGLPYATRDAFKAIRERFMDE 305

Query: 303 SSGIRKAMDMGTLFDSLSRKGFMATRRRSKSSNKNEKSYLRYSARF 348
             G+RK M+MG LFD+L  KGF   ++R+K    N+   LR SARF
Sbjct: 306 HDGLRKKMEMGDLFDTLVAKGFATKQKRTKIPKSNKSFSLRSSARF 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512253|ref|XP_003524835.1| PREDICTED: vacuolar protein sorting-associated protein 72 homolog [Glycine max]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/355 (68%), Positives = 279/355 (78%), Gaps = 9/355 (2%)

Query: 6   SSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADE 65
            S ED  V LDR+SR TRGKR+ KLLDDE +EDE FWNQDALKE+E DDNY+EE EIADE
Sbjct: 3   GSGEDV-VLLDRASRATRGKRLTKLLDDEIQEDELFWNQDALKEDEEDDNYQEEPEIADE 61

Query: 66  FDSDFDEDEPEPDEEV---ENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDV 122
           FDSDFD+DEP P+EE    +N+ DER+  KKRLIFPGK L KKKKKKK +SKL+S  K+ 
Sbjct: 62  FDSDFDQDEPVPEEEEDPNKNDDDERMHKKKRLIFPGKTLAKKKKKKKTISKLESSPKEN 121

Query: 123 KSNEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGE 182
           +  E S       V  D  GER+IRKSTRT+V+VRQAERDAIRAALQAT+KP+KRKKEGE
Sbjct: 122 EDEEHS-----GKVVEDEGGERMIRKSTRTSVIVRQAERDAIRAALQATIKPVKRKKEGE 176

Query: 183 EKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSY 242
           EKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVK+RAIVHK V+ GPQ+RY+SK+G SY
Sbjct: 177 EKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKRRAIVHKTVFNGPQIRYISKNGTSY 236

Query: 243 LEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVDK 302
           LEF KG SF S++ T  V YPE+ VC +TGLPAKYRDPKTG PYATKEAFKIIRERF+++
Sbjct: 237 LEFIKGSSFHSDIPTAPVQYPEQPVCPITGLPAKYRDPKTGQPYATKEAFKIIRERFLNE 296

Query: 303 SSGIRKAMDMGTLFDSLSRKGFMATRRRSKSSNKNEKSYLRYSARFRRFPSLEIE 357
           S+  RK M MG L+DS+S  GF   R+RS   +KN     R  ARFRR P  E E
Sbjct: 297 STNSRKDMSMGGLYDSVSGCGFSIKRKRSIMPDKNVNPDGRSLARFRRIPDFEDE 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4415919|gb|AAD20150.1| hypothetical protein [Arabidopsis thaliana]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/360 (64%), Positives = 274/360 (76%), Gaps = 20/360 (5%)

Query: 9   EDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEFDS 68
           E+  VFLDR++R TRGKRM KLLDDE EEDE FWNQ+ALKEEE+DD YE E+E+ADEFDS
Sbjct: 6   EEPMVFLDRTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDEYEAEREVADEFDS 65

Query: 69  DFDED--------------EPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILS- 113
           DF++D              EPEPD    NE + R   KKRLI+PGK  +KKKKKK  +  
Sbjct: 66  DFNDDVFMSCLCIEYLFIKEPEPDAVAVNEKELRDLPKKRLIYPGKTASKKKKKKTKVVS 125

Query: 114 KLDSPDKDVKSNEQ-----SILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAAL 168
           +L+    D K  E+         E ++   D+EGE++IRKSTRT+VVVRQAERDA+RAA+
Sbjct: 126 QLEYIPGDEKPGEELGNKEQEEKEENEAQEDMEGEKVIRKSTRTSVVVRQAERDALRAAI 185

Query: 169 QATMKPIKRKKEGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYT 228
           QAT KPI+RKK GEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKK+AIVHKAVY 
Sbjct: 186 QATTKPIQRKKVGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKKAIVHKAVYK 245

Query: 229 GPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYAT 288
           GPQ+RY SKDG +YLEF  G SF SELST SVPYPE+AVC +TGLPAKYRDPKTGLPYAT
Sbjct: 246 GPQIRYHSKDGCNYLEFCNGASFNSELSTKSVPYPEKAVCVITGLPAKYRDPKTGLPYAT 305

Query: 289 KEAFKIIRERFVDKSSGIRKAMDMGTLFDSLSRKGFMATRRRSKSSNKNEKSYLRYSARF 348
           ++AFK IRERF+D+  G+RK M+MG LFD+L  KGF   ++R+K    N+   LR SARF
Sbjct: 306 RDAFKAIRERFMDEHDGLRKKMEMGDLFDTLVAKGFATKQKRTKIPKSNKSFSLRSSARF 365

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413941583|gb|AFW74232.1| vacuolar protein sorting protein 72 [Zea mays]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/354 (59%), Positives = 261/354 (73%), Gaps = 3/354 (0%)

Query: 6   SSKEDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADE 65
           +  ++ PV LDR++R +RGKR+ KLL+DE E+DEAFWNQ+ALK+EENDDNY EE +  DE
Sbjct: 3   AGDDEPPVLLDRAARASRGKRITKLLEDEVEQDEAFWNQEALKDEENDDNYVEEPDAGDE 62

Query: 66  FDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKK-KKKKILSKLDSPDKDVKS 124
           FDSDF EDE E D+E E EV ER+  KKRL+FPGK L K   KKKK   K +   K  KS
Sbjct: 63  FDSDFGEDESETDDEPEKEVRERLPIKKRLMFPGKTLRKTNVKKKKATPKPEDGTKADKS 122

Query: 125 NEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEK 184
            ++       D+P+++E E+ IRKSTRT+V+VRQAER+AIRA  +AT KPIKRKKEGEEK
Sbjct: 123 ADKPSSSTQADLPDELEAEKAIRKSTRTSVIVRQAEREAIRAEKEATAKPIKRKKEGEEK 182

Query: 185 RMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLE 244
           RMTQEEMLLEAA+TEIMN+RNLERVLAREEEVKK+A+VHK  Y GP +R+ S+DG S LE
Sbjct: 183 RMTQEEMLLEAAETEIMNMRNLERVLAREEEVKKKAVVHKDTYEGPTIRFFSRDGESRLE 242

Query: 245 FSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVDKSS 304
           F  G SF SEL TTS PYPE+ VC VTGLPAKYRDPKTGLPYAT EAFKIIRE F+ + +
Sbjct: 243 FINGASFGSELCTTSSPYPEKPVCVVTGLPAKYRDPKTGLPYATMEAFKIIRESFLKEEA 302

Query: 305 GIRKA--MDMGTLFDSLSRKGFMATRRRSKSSNKNEKSYLRYSARFRRFPSLEI 356
             ++    +MG LF+S++    M  +RR +  + N     R+  R  R P+ ++
Sbjct: 303 DRKRPNMSNMGELFESITGGHLMPKKRRVEIRSPNMLGGSRHGGRTWRIPAFDM 356

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
TAIR|locus:2040580	365	SWC2 "AT2G36740" [Arabidopsis	0.980	0.967	0.534	5.3e-88
ZFIN|ZDB-GENE-060503-88	369	vps72 "vacuolar protein sortin	0.163	0.159	0.435	1.7e-13
WB|WBGene00007645	391	C17E4.6 [Caenorhabditis elegan	0.355	0.327	0.380	1.4e-12
ZFIN|ZDB-GENE-100922-13	335	si:ch211-203d17.1 "si:ch211-20	0.177	0.191	0.446	2.5e-12
UNIPROTKB|Q5E9F6	364	VPS72 "Vacuolar protein sortin	0.197	0.195	0.424	2.5e-12
UNIPROTKB|Q15906	364	VPS72 "Vacuolar protein sortin	0.197	0.195	0.424	4.4e-12
UNIPROTKB|Q5R5V9	364	VPS72 "Vacuolar protein sortin	0.197	0.195	0.424	4.4e-12
UNIPROTKB|A6PW55	375	VPS72 "Vacuolar protein sortin	0.197	0.189	0.424	5e-12
UNIPROTKB|F1SSY4	364	VPS72 "Uncharacterized protein	0.197	0.195	0.424	5.8e-12
RGD|1306121	364	Vps72 "vacuolar protein sortin	0.163	0.162	0.466	7.6e-12

TAIR|locus:2040580 SWC2 "AT2G36740" [Arabidopsis thaliana (taxid:3702)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 192/359 (53%), Positives = 223/359 (62%)

Query:     8 KEDAPVFLDRSSRVTRGKRMNKLLXXXXXXXXAFWNQDALKXXXXXXXXXXXXXIAXXXX 67
             +E+  VFLDR++R TRGKRM KLL         FWNQ+ALK             +A    
Sbjct:     5 EEEPMVFLDRTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDEYEAEREVADEFD 64

Query:    68 XXXXXXXXXXXXXXXXXXXXRVWTKKRLIFPGXXXXXXXXXXXXXXXXXXXXXXVKS--- 124
                                 R   KKRLI+PG                       +    
Sbjct:    65 SDFNDDEPEPDAVAVNEKELRDLPKKRLIYPGKTASKKKKKKTKVVSQLEYIPGDEKPGE 124

Query:   125 ---NEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEG 181
                N++    E ++   D+EGE++IRKSTRT+VVVRQAERDA+RAA+QAT KPI+RKK G
Sbjct:   125 ELGNKEQEEKEENEAQEDMEGEKVIRKSTRTSVVVRQAERDALRAAIQATTKPIQRKKVG 184

Query:   182 EEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYS 241
             EEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKK+AIVHKAVY GPQ+RY SKDG +
Sbjct:   185 EEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKKAIVHKAVYKGPQIRYHSKDGCN 244

Query:   242 YLEFSKGVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVD 301
             YLEF  G SF SELST SVPYPE+AVC +TGLPAKYRDPKTGLPYAT++AFK IRERF+D
Sbjct:   245 YLEFCNGASFNSELSTKSVPYPEKAVCVITGLPAKYRDPKTGLPYATRDAFKAIRERFMD 304

Query:   302 KSSGIRKAMDMGTLFDSLSRKGFMATXXXXXXXXXXXXXYLRYSARFRRFPSLEIEVSD 360
             +  G+RK M+MG LFD+L  KGF                 LR SARF    S E    D
Sbjct:   305 EHDGLRKKMEMGDLFDTLVAKGFATKQKRTKIPKSNKSFSLRSSARFLSSESEEESEED 363

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

ZFIN|ZDB-GENE-060503-88 vps72 "vacuolar protein sorting 72 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 124 (48.7 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
 Identities = 27/62 (43%), Positives = 37/62 (59%)

Query:   241 SYLEFSKGVSFQSELSTTS--VP-YPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRE 297
             +Y+ FS   +F S   + +   P +P + VC VT  PA YRDP T +PYA   AF+IIRE
Sbjct:   263 TYITFSDDEAFSSAFPSAARCTPTHPVQEVCPVTHKPALYRDPVTDIPYANARAFRIIRE 322

Query:   298 RF 299
              +
Sbjct:   323 AY 324

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

WB|WBGene00007645 C17E4.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 172 (65.6 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 51/134 (38%), Positives = 70/134 (52%)

Query:   187 TQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDGYSYLEFS 246
             TQ  ML EA +TE MN+ +L++  A E E +KR      V   P      ++     E  
Sbjct:   215 TQAAMLKEAEKTEKMNIESLKKYEAFELE-RKRKREKNTVRVFPPG---PREQIKMTESG 270

Query:   247 KGVSFQSELSTTSVPYP-ERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVDKSSG 305
               ++  SE+ T     P ER +CAVTG PA+Y DP T LPY+T  AFK+IR+R+      
Sbjct:   271 TTITL-SEIKTFKCERPRERNLCAVTGRPARYLDPVTRLPYSTAYAFKVIRDRYHKHLRS 329

Query:   306 IRKAMDMGTLFDSL 319
             IR   ++ T   SL
Sbjct:   330 IRGNDEVTTYLKSL 343

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0040027 "negative regulation of vulval development" evidence=IMP

ZFIN|ZDB-GENE-100922-13 si:ch211-203d17.1 "si:ch211-203d17.1" [Danio rerio (taxid:7955)]

 Score = 132 (51.5 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
 Identities = 29/65 (44%), Positives = 38/65 (58%)

Query:   236 SKDGYSYLEFSKGVSFQSELSTTSVP-YPERAVCAVTGLPAKYRDPKTGLPYATKEAFKI 294
             +K   +Y+ FS   SFQ     +  P  P + VC VT  PA YRDP T +PYA  +AF+I
Sbjct:   236 TKCSRTYITFSDDESFQRVFPQSPAPRVPVQEVCPVTHKPALYRDPITDIPYANVQAFRI 295

Query:   295 IRERF 299
             IRE +
Sbjct:   296 IREAY 300

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q5E9F6 VPS72 "Vacuolar protein sorting-associated protein 72 homolog" [Bos taurus (taxid:9913)]

 Score = 134 (52.2 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
 Identities = 31/73 (42%), Positives = 41/73 (56%)

Query:   228 TGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVP-YPERAVCAVTGLPAKYRDPKTGLPY 286
             TGP +   ++   +++ FS   +F+        P  P R VC VT  PA YRDP T +PY
Sbjct:   252 TGPVIPP-ARCSRTFITFSDDATFEEWFPQGRTPKIPVREVCPVTHRPALYRDPVTDIPY 310

Query:   287 ATKEAFKIIRERF 299
             AT  AFKIIRE +
Sbjct:   311 ATARAFKIIREAY 323

GO:0043234 "protein complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q15906 VPS72 "Vacuolar protein sorting-associated protein 72 homolog" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
 Identities = 31/73 (42%), Positives = 41/73 (56%)

Query:   228 TGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVP-YPERAVCAVTGLPAKYRDPKTGLPY 286
             TGP +   ++   +++ FS   +F+        P  P R VC VT  PA YRDP T +PY
Sbjct:   252 TGP-VNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPY 310

Query:   287 ATKEAFKIIRERF 299
             AT  AFKIIRE +
Sbjct:   311 ATARAFKIIREAY 323

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043234 "protein complex" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5R5V9 VPS72 "Vacuolar protein sorting-associated protein 72 homolog" [Pongo abelii (taxid:9601)]

 Score = 132 (51.5 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
 Identities = 31/73 (42%), Positives = 41/73 (56%)

Query:   228 TGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVP-YPERAVCAVTGLPAKYRDPKTGLPY 286
             TGP +   ++   +++ FS   +F+        P  P R VC VT  PA YRDP T +PY
Sbjct:   252 TGP-VNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPY 310

Query:   287 ATKEAFKIIRERF 299
             AT  AFKIIRE +
Sbjct:   311 ATARAFKIIREAY 323

GO:0043234 "protein complex" evidence=ISS

UNIPROTKB|A6PW55 VPS72 "Vacuolar protein sorting-associated protein 72 homolog" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
 Identities = 31/73 (42%), Positives = 41/73 (56%)

Query:   228 TGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVP-YPERAVCAVTGLPAKYRDPKTGLPY 286
             TGP +   ++   +++ FS   +F+        P  P R VC VT  PA YRDP T +PY
Sbjct:   263 TGP-VNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPY 321

Query:   287 ATKEAFKIIRERF 299
             AT  AFKIIRE +
Sbjct:   322 ATARAFKIIREAY 334

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1SSY4 VPS72 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 131 (51.2 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
 Identities = 31/73 (42%), Positives = 41/73 (56%)

Query:   228 TGPQLRYLSKDGYSYLEFSKGVSFQSELSTTSVP-YPERAVCAVTGLPAKYRDPKTGLPY 286
             TGP +   ++   +++ FS   +F+        P  P R VC VT  PA YRDP T +PY
Sbjct:   252 TGPVVPP-ARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPY 310

Query:   287 ATKEAFKIIRERF 299
             AT  AFKIIRE +
Sbjct:   311 ATARAFKIIREAY 323

GO:0043234 "protein complex" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1306121 Vps72 "vacuolar protein sorting 72 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
 Identities = 28/60 (46%), Positives = 35/60 (58%)

Query:   241 SYLEFSKGVSFQSELSTTSVP-YPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERF 299
             +++ FS   +F+        P  P R VC VT  PA YRDP T +PYAT  AFKIIRE +
Sbjct:   264 TFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAY 323

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.4__1717__AT2G36740.1	annotation not avaliable (364 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.7__3130__AT5G37055.1	annotation not avaliable (171 aa)					•		•		0.698

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	360
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	3e-41
pfam08265	30	pfam08265, YL1_C, YL1 nuclear protein C-terminal d	1e-13
smart00993	30	smart00993, YL1_C, YL1 nuclear protein C-terminal	1e-12
COG5195	118	COG5195, COG5195, Uncharacterized conserved protei	3e-05
pfam04438	30	pfam04438, zf-HIT, HIT zinc finger	3e-04

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score =  144 bits (365), Expect = 3e-41
 Identities = 90/241 (37%), Positives = 124/241 (51%), Gaps = 21/241 (8%)

Query: 15  LDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEF-DSDFDE- 72
             R+ R   G RM KLL++E EEDE FW     +EEE+D+ +E E+E  +E  DSDFD+ 
Sbjct: 2   ATRARRSNAGNRMKKLLEEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDS 61

Query: 73  --DEPEPDEEVENEV---DERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQ 127
             DEPE D+E E E     E    KK+ +         KKKKK         K      +
Sbjct: 62  EDDEPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPK 121

Query: 128 SILPENHDVPNDVEGERIIRKSTRTAVV-------VRQAERDAIRAALQATMKPIKRKKE 180
                    P  ++  R  RKS+R++ V        R  ER+  R  +QA  K  KRK++
Sbjct: 122 KKSERISWAPTLLDSPR--RKSSRSSTVQNKEATHERLKEREIRRKKIQA--KARKRKEK 177

Query: 181 GEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKR---AIVHKAVYTGPQLRYLSK 237
            +EK +TQEE L EA +TE +NL++LER   +EEE KK    A+  + +Y GP +RY S 
Sbjct: 178 KKEKELTQEERLAEAKETERINLKSLERYEEQEEEKKKAKIQALKKRRLYEGPVIRYWSG 237

Query: 238 D 238
            
Sbjct: 238 T 238

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|191983 pfam08265, YL1_C, YL1 nuclear protein C-terminal domain

 Score = 63.6 bits (156), Expect = 1e-13
 Identities = 21/29 (72%), Positives = 25/29 (86%)

Query: 267 VCAVTGLPAKYRDPKTGLPYATKEAFKII 295
            C +TGLPAKY+DPKTGLPY+  EAFK+I
Sbjct: 2   YCDITGLPAKYKDPKTGLPYSNVEAFKVI 30

This domain is found in proteins of the YL1 family. These proteins have been shown to be DNA-binding and may be a transcription factor. This domain is found in proteins that are not YL1 proteins. Length = 30

>gnl|CDD|198061 smart00993, YL1_C, YL1 nuclear protein C-terminal domain

 Score = 61.4 bits (150), Expect = 1e-12
 Identities = 20/29 (68%), Positives = 24/29 (82%)

Query: 267 VCAVTGLPAKYRDPKTGLPYATKEAFKII 295
            C +TGLPA+YRDPKTGL YA  EA+K+I
Sbjct: 2   YCDITGLPARYRDPKTGLRYANAEAYKVI 30

This domain is found in proteins of the YL1 family. These proteins have been shown to be DNA-binding and may be a transcription factor. This domain is found in proteins that are not YL1 proteins. Length = 30

>gnl|CDD|227522 COG5195, COG5195, Uncharacterized conserved protein [Function unknown]

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 213 EEEVKKRAIVHKAVYTGPQLRYLS-KDGYSYLEFSKGVSFQSELSTTSVP--YPERAVCA 269
           + ++ KR    K+ Y G   R+ + +     L      S    LS  + P   P    C 
Sbjct: 11  DMKLLKRPWFKKSTYKGKNRRFKTLRQLIPRLTIENESSKHRYLSIEAPPSVKPRMKYCD 70

Query: 270 VTGLPAKYRDPKTGLPYATKEAFKIIRE 297
           VTGLPA Y  P TGL Y   E +K+I E
Sbjct: 71  VTGLPAPYTCPNTGLRYHNSEIYKLICE 98

Length = 118

>gnl|CDD|203013 pfam04438, zf-HIT, HIT zinc finger

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 265 RAVCAVTGLPAKYRDPKTGLPY 286
           R +C+V G P+KYR P+ G+ Y
Sbjct: 2   RKLCSVCGNPSKYRCPRCGVRY 23

This presumed zinc finger contains up to 6 cysteine residues that could coordinate zinc. The domain is named after the HIT protein. This domain is also found in the Thyroid receptor interacting protein 3 (TRIP-3) that specifically interacts with the ligand binding domain of the thyroid receptor. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
KOG2897	390	consensus DNA-binding protein YL1 and related prot	100.0
PF05764	240	YL1: YL1 nuclear protein; InterPro: IPR008895 The	100.0
PF08265	30	YL1_C: YL1 nuclear protein C-terminal domain; Inte	99.53
KOG4137	102	consensus Uncharacterized conserved protein [Funct	99.28
COG5195	118	Uncharacterized conserved protein [Function unknow	99.21
KOG2897	390	consensus DNA-binding protein YL1 and related prot	96.57
PF04438	30	zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc	96.41
PF04795	89	PAPA-1: PAPA-1-like conserved region; InterPro: IP	94.62
KOG0526	615	consensus Nucleosome-binding factor SPN, POB3 subu	89.84
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	89.59
PF05764	240	YL1: YL1 nuclear protein; InterPro: IPR008895 The	86.34
KOG3362	156	consensus Predicted BBOX Zn-finger protein [Genera	80.28

>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]

Probab=100.00  E-value=4.6e-60  Score=462.45  Aligned_cols=348  Identities=37%  Similarity=0.484  Sum_probs=265.2

Q ss_pred             CCCcccccccccccccHHHHHHHhhhhhhhhhhhhhcccchhcccccccc-ccccccccCCCCCCCC--CCCChhhhhhh
Q 018130            9 EDAPVFLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEE-EQEIADEFDSDFDEDE--PEPDEEVENEV   85 (360)
Q Consensus         9 ~~~~l~~~R~rRstAGnRM~kLL~eE~e~De~f~~~~~F~Eee~D~ey~~-e~e~eD~~DSDFd~dE--~e~dde~E~E~   85 (360)
                      ..++|+++|++|+||||+|++||++|+++|+++|+|++|.|+++|++|++ +.+.+|++||||++|+  +++|++.+++.
T Consensus         3 ~t~~~~~~RSrRanaGnKls~LLe~E~ed~~~~t~q~s~~e~~~DeEyE~~~~e~eDe~DsDfs~d~~~~~sDe~sed~~   82 (390)
T KOG2897|consen    3 NTEMLAAGRSRRANAGNKLSKLLESEEEDDEYSTTQGSFSEDSHDEEYEGEESEEEDEVDSDFSIDETSNESDEESEDDK   82 (390)
T ss_pred             cchhhhhccccccccchHHHHHhhhhhhhhHHhhhhccccccccchhhhhhhhhhccccccccchhhccccCcccccccc
Confidence            34689999999999999999999999999999999999999999999994 5889999999999983  22233222222


Q ss_pred             hhhhhhhccccCCCCCcchhhhhhccccC-CCCCCccccCccccCCCCC-----CCCCCCccccccchhhhHHHHHHHHH
Q 018130           86 DERVWTKKRLIFPGKPLTKKKKKKKILSK-LDSPDKDVKSNEQSILPEN-----HDVPNDVEGERIIRKSTRTAVVVRQA  159 (360)
Q Consensus        86 ~Er~~rKKr~~~~~k~~~~~kKKkk~~~~-~~~~~~~kk~~e~~~~~~~-----~~~~~~~~~~~~~RkStR~st~~r~~  159 (360)
                      .+....+++++...+.   .+|+++++.+ +.--++..++.+......+     ..+.....+...+|+|+|+|||.+.+
T Consensus        83 ~~~d~~~k~~vl~~~~---rkkr~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~~~RkS~R~St~~~t~  159 (390)
T KOG2897|consen   83 EEEDEDAKRKVLRTKE---RKKRKKALKKRAANLPAADKKPKFGGTAERSEEPNNEVQKEGKDPVHRRKSERTSTVEKTQ  159 (390)
T ss_pred             cccccccccchhhhHH---hhhhhhhhcccccccccccCCCCcCCcccccccchHHHHhhccCcccccchhhhHHHhhhh
Confidence            1111223333322111   1111111110 0000111111111111111     12222333345689999999999988


Q ss_pred             HHHHHHHHHHhhcccccccccccCC-CCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHhhhcccccCCeeEEEec-
Q 018130          160 ERDAIRAALQATMKPIKRKKEGEEK-RMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSK-  237 (360)
Q Consensus       160 erE~~R~~~~~~~k~~krKk~~~~~-~lTQEElL~EA~~TE~~N~~SL~~~~~~EeekKk~~~~~k~~~~gP~ir~~S~-  237 (360)
                      +....|.+.+...+++++|++..+. .+||||||.||++||.+|+.||+.+.++|+.+|++++.+|+.+.||+|+|||. 
T Consensus       160 ~~~e~rs~~e~~~r~r~rK~~~~E~~~~TQeE~l~eAk~TE~~Nl~SLe~~~~~ee~~Kkk~~~~kr~~~~P~i~~~S~t  239 (390)
T KOG2897|consen  160 EETELRSKEEKDGRPRRRKKKFNEPKMGTQEERLLEAKKTEAMNLLSLEIVAAREEDDKKKAAMKKRQEKGPIITYHSLT  239 (390)
T ss_pred             hHHHHhhhhhccccchhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceeEEeec
Confidence            8777777766667776666655554 45999999999999999999999999999999998888899999999999999 


Q ss_pred             ----------------------CC-c--eeeEeecCCccccccCCCCCCCC-CCcccccCCCCcccCCCCCCCCCCCHHH
Q 018130          238 ----------------------DG-Y--SYLEFSKGVSFQSELSTTSVPYP-ERAVCAVTGLPAKYRDPKTGLPYATKEA  291 (360)
Q Consensus       238 ----------------------~~-~--~~i~f~d~~~~~~~~~~~~~~~P-~k~~C~iTg~~a~Y~DP~T~lpy~~~~~  291 (360)
                                            .| |  +|+++.+.++|.+.|+...+|.| ...+|+|||+||+|+||+|||||+|+.|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~~t~~~e~~~~s~~~~~~~p~~~~~~~C~iTg~PA~Y~DPVT~lPy~ta~A  319 (390)
T KOG2897|consen  240 KPAAFEPERGRKPAKNTVRLFPDGRCEQTFMTESGEASFLSEFPTKSPPKPRERVVCVITGRPARYLDPVTGLPYSTAQA  319 (390)
T ss_pred             chhhcccccccccccccccccCCCcccceeeecccchhhhhcCCccCCCCCcccccccccCCcccccCcccCCcchhHHH
Confidence                                  44 4  67788888999999998888877 8899999999999999999999999999


Q ss_pred             HHHHHHcccccchhhhccCCchhhhhhcccccccccccccccCCCCccccccccccccccCCcccccc
Q 018130          292 FKIIRERFVDKSSGIRKAMDMGTLFDSLSRKGFMATRRRSKSSNKNEKSYLRYSARFRRFPSLEIEVS  359 (360)
Q Consensus       292 fk~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (360)
                      ||+||+.|.+++.++.+.+.|..|+++|...++.+..+|+..+.-.....+...++|--....+.++|
T Consensus       320 FKviRe~y~~~~~~~~~~de~~~l~~tl~~~p~~q~~kr~~l~~s~~~~~~~~i~~~~~~e~~~es~s  387 (390)
T KOG2897|consen  320 FKVIRERYKKHLRSIRGNDEMPNLFKTLKALPSPQEQKRVPLPTSGPITSGPLIASSAGLEVMAESTS  387 (390)
T ss_pred             HHHHHHHHHHHhhhcccchhhhhHHHhhccCCCCCcCccccCcCcCcccccchhhhhhcchhhhhhhc
Confidence            99999999999999999999999999999999999999999998888887888888776655555554

>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []

Probab=100.00  E-value=1.4e-47  Score=361.97  Aligned_cols=215  Identities=44%  Similarity=0.572  Sum_probs=154.5

Q ss_pred             cccccccccccHHHHHHHhhhhhhhhhhhhhcc-cchhcccccccccccccccc--CCCCCCCCCCC---Chh--hhhhh
Q 018130           14 FLDRSSRVTRGKRMNKLLDDENEEDEAFWNQDA-LKEEENDDNYEEEQEIADEF--DSDFDEDEPEP---DEE--VENEV   85 (360)
Q Consensus        14 ~~~R~rRstAGnRM~kLL~eE~e~De~f~~~~~-F~Eee~D~ey~~e~e~eD~~--DSDFd~dE~e~---dde--~E~E~   85 (360)
                      |++|++||||||||++||++|+++|++||++.+ |+||++|++|+++++++|++  |||||+|++++   +++  +|.++
T Consensus         1 v~~R~rRsnaGnrm~~LL~~E~e~de~~~~~~~~f~Eee~D~ef~~~~~eed~~~~Dsdf~~se~de~~~~~e~e~e~~~   80 (240)
T PF05764_consen    1 VATRPRRSNAGNRMKKLLEEELEEDEFFWNQYGLFQEEEDDEEFESEEEEEDEEEDDSDFDDSEDDEDESDDEEEGEKEL   80 (240)
T ss_pred             CCCcccccchhHHHHHHHHHHHhhhhhhhhhcccccccCCCccccCCCccccccccccccCccccCCCCCcccchhhhHH
Confidence            689999999999999999999999999999765 99999999999987777776  99999987632   222  22222


Q ss_pred             --hhhhhhhccccCCCCCcchhhhhhccccCC----CCCCccccCccccCCCCCCCCCCCccccccchhhhHHHHH----
Q 018130           86 --DERVWTKKRLIFPGKPLTKKKKKKKILSKL----DSPDKDVKSNEQSILPENHDVPNDVEGERIIRKSTRTAVV----  155 (360)
Q Consensus        86 --~Er~~rKKr~~~~~k~~~~~kKKkk~~~~~----~~~~~~kk~~e~~~~~~~~~~~~~~~~~~~~RkStR~st~----  155 (360)
                        +++..+|++++..++..|..+++++....+    ...+++++.+..     ..|+++..  ..++|+|+|++|+    
T Consensus        81 ~~~ek~~kkk~~~~~~~~~p~~~k~k~~~~~~~~~~~~~~~~k~~~~~-----~~~~~~~~--~~~~R~S~R~st~~~~~  153 (240)
T PF05764_consen   81 RREEKLKKKKRRKKKAYKEPAKKKKKKPPQAAKKDSAAAPKPKKKKER-----QSWAPTLL--DSPRRKSTRSSTVANKQ  153 (240)
T ss_pred             HHHHHHHHhhhcccccchhhhhhcccccccccccccccCCCCcccccc-----ccCccccc--ccchhhhHHHHHHHHHH
Confidence              233333333333332222222221111111    111222222222     12444332  3458999999887    


Q ss_pred             ---HHHHHHHHHHHHHHhhcccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH---HHhhhcccccC
Q 018130          156 ---VRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKK---RAIVHKAVYTG  229 (360)
Q Consensus       156 ---~r~~erE~~R~~~~~~~k~~krKk~~~~~~lTQEElL~EA~~TE~~N~~SL~~~~~~EeekKk---~~~~~k~~~~g  229 (360)
                         .++++++.+++.+++.|  .++++....++|||||||+||++||++|++||++|+++|+++|+   .+.++|.++.|
T Consensus       154 ~~~~rlke~e~~r~~~~~~~--~~~k~~~~~~~lTQeElL~EAk~TE~~N~~SL~~~~~~EeekKk~~~~~~~~K~~~~G  231 (240)
T PF05764_consen  154 ATYERLKEREEKRKKRQARM--KKKKKKQEERPLTQEELLEEAKETEEENLKSLNKYEELEEEKKKAQRQAQKKKKIYTG  231 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHhh--hcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence               58899998888888777  35666778899999999999999999999999999999999998   66777777899


Q ss_pred             CeeEEEec
Q 018130          230 PQLRYLSK  237 (360)
Q Consensus       230 P~ir~~S~  237 (360)
                      |+|+|||+
T Consensus       232 P~ir~~S~  239 (240)
T PF05764_consen  232 PVIRYHSR  239 (240)
T ss_pred             CeEEEEeC
Confidence            99999996

They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08265 YL1_C: YL1 nuclear protein C-terminal domain; InterPro: IPR013272 This domain is found at the C terminus in proteins of the YL1 family []

Probab=99.53  E-value=3.2e-15  Score=99.15  Aligned_cols=30  Identities=73%  Similarity=1.336  Sum_probs=28.7

Q ss_pred             cccccCCCCcccCCCCCCCCCCCHHHHHHH
Q 018130          266 AVCAVTGLPAKYRDPKTGLPYATKEAFKII  295 (360)
Q Consensus       266 ~~C~iTg~~a~Y~DP~T~lpy~~~~~fk~i  295 (360)
                      ++|+|||+||+|+||.|||||+|+++|++|
T Consensus         1 k~C~iTglpA~Y~DP~T~l~Y~n~~ayk~i   30 (30)
T PF08265_consen    1 KYCDITGLPARYRDPKTGLPYANSEAYKII   30 (30)
T ss_pred             CcccccCCCccccCCCCCCcccCHHHhhcC
Confidence            589999999999999999999999999986

These proteins have been shown to be DNA-binding and may be transcription factors []. This domain is also found in proteins that do not belong to the YL1 family.

>KOG4137 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=2.1e-12  Score=106.15  Aligned_cols=47  Identities=43%  Similarity=0.727  Sum_probs=43.6

Q ss_pred             CCCCCCCCCCcccccCCCCcccCCCCCCCCCCCHHHHHHHHHccccc
Q 018130          256 STTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERFVDK  302 (360)
Q Consensus       256 ~~~~~~~P~k~~C~iTg~~a~Y~DP~T~lpy~~~~~fk~ir~~~~~~  302 (360)
                      .++++..|.+++|+||||||.|.||.|||.|+|.++|+.|+++..+.
T Consensus        41 ~appSv~PakKycDvTGLpapYtdP~t~Lry~naeiY~~i~empsd~   87 (102)
T KOG4137|consen   41 EAPPSVKPAKKYCDVTGLPAPYTDPNTGLRYHNAEIYKLICEMPSDR   87 (102)
T ss_pred             cCCCccccchhhccccCCcccccCCCccceeccHHHHHHHHHCCchH
Confidence            56778889999999999999999999999999999999999988765

>COG5195 Uncharacterized conserved protein [Function unknown]

Probab=99.21  E-value=8.4e-12  Score=104.00  Aligned_cols=81  Identities=28%  Similarity=0.443  Sum_probs=58.4

Q ss_pred             hhcccccCCeeEEEecCC-ceeeEeec--CCccccccCCCCCCCCCCcccccCCCCcccCCCCCCCCCCCHHHHHHHHHc
Q 018130          222 VHKAVYTGPQLRYLSKDG-YSYLEFSK--GVSFQSELSTTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRER  298 (360)
Q Consensus       222 ~~k~~~~gP~ir~~S~~~-~~~i~f~d--~~~~~~~~~~~~~~~P~k~~C~iTg~~a~Y~DP~T~lpy~~~~~fk~ir~~  298 (360)
                      .++..+.||.-|+.+..- -+-++..+  ...-...+.++++..|.+++|+|||+||.|+||.|||.|+|.++|+.|+++
T Consensus        20 fk~~~Yk~~~rr~ktlrQli~~~~i~ne~sk~~Y~sieappSv~P~~KyCDvTGL~a~Yt~P~t~lrYhn~eiY~lI~el   99 (118)
T COG5195          20 FKKSTYKGKNRRFKTLRQLIPRLTIENESSKHRYLSIEAPPSVKPRMKYCDVTGLPAPYTCPNTGLRYHNSEIYKLICEL   99 (118)
T ss_pred             ccCccccCcccchhhHHHHccccccccccccceeEeecCCCccccccccccccCCcccccCCCcCceeccHHHHHHhhcC
Confidence            456667788777765521 01112222  111122345677788999999999999999999999999999999999998


Q ss_pred             cccc
Q 018130          299 FVDK  302 (360)
Q Consensus       299 ~~~~  302 (360)
                      ....
T Consensus       100 psg~  103 (118)
T COG5195         100 PSGR  103 (118)
T ss_pred             CCch
Confidence            8765

>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]

Probab=96.57  E-value=0.0007  Score=68.17  Aligned_cols=86  Identities=20%  Similarity=0.196  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHhhh--cccccCCeeEEEecCC--ceeeEeecCCccccc----cCCCC
Q 018130          188 QEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVH--KAVYTGPQLRYLSKDG--YSYLEFSKGVSFQSE----LSTTS  259 (360)
Q Consensus       188 QEElL~EA~~TE~~N~~SL~~~~~~EeekKk~~~~~--k~~~~gP~ir~~S~~~--~~~i~f~d~~~~~~~----~~~~~  259 (360)
                      +...+..+..+..+|+.||..+..++-++.......  +....|+.-+-.+..+  .+|..-.+....+..    +| +.
T Consensus       220 k~~~~kr~~~~P~i~~~S~t~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~~t~~~e~~~~s~~~~~~~p~~~~~~~C-~i  298 (390)
T KOG2897|consen  220 KAAMKKRQEKGPIITYHSLTKPAAFEPERGRKPAKNTVRLFPDGRCEQTFMTESGEASFLSEFPTKSPPKPRERVVC-VI  298 (390)
T ss_pred             HHHHHhhhccCCceeEEeecchhhcccccccccccccccccCCCcccceeeecccchhhhhcCCccCCCCCcccccc-cc
Confidence            777778888899999999998888776655432222  2223676666666554  233332222212111    11 11


Q ss_pred             CCCCCCcccccCCCC
Q 018130          260 VPYPERAVCAVTGLP  274 (360)
Q Consensus       260 ~~~P~k~~C~iTg~~  274 (360)
                      ...|....-+|||+|
T Consensus       299 Tg~PA~Y~DPVT~lP  313 (390)
T KOG2897|consen  299 TGRPARYLDPVTGLP  313 (390)
T ss_pred             cCCcccccCcccCCc
Confidence            236778889999999

>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.41  E-value=0.0013  Score=43.82  Aligned_cols=29  Identities=45%  Similarity=0.902  Sum_probs=23.6

Q ss_pred             CcccccCCCCcccCCCCCCCCCCCHHHHH
Q 018130          265 RAVCAVTGLPAKYRDPKTGLPYATKEAFK  293 (360)
Q Consensus       265 k~~C~iTg~~a~Y~DP~T~lpy~~~~~fk  293 (360)
                      ..+|.|=|.+++|++|..+++|.+++.||
T Consensus         2 ~~~C~vC~~~~kY~Cp~C~~~~CSl~C~k   30 (30)
T PF04438_consen    2 RKLCSVCGNPAKYRCPRCGARYCSLACYK   30 (30)
T ss_dssp             -EEETSSSSEESEE-TTT--EESSHHHHH
T ss_pred             cCCCccCcCCCEEECCCcCCceeCcEeEC
Confidence            46899999999999999999999999996

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.

>PF04795 PAPA-1: PAPA-1-like conserved region; InterPro: IPR006880 This is a group of proteins with a conserved C-terminal region which is found in PAPA-1, a PAP-1 binding protein, Q9C086 from SWISSPROT

Probab=94.62  E-value=0.11  Score=42.62  Aligned_cols=59  Identities=17%  Similarity=0.276  Sum_probs=39.7

Q ss_pred             HHHHHHHHhHHHHHHHHHhHHHHHHH-----------H---hhhcccccCCeeEEEecCCceeeEeecCCccc
Q 018130          194 EAAQTEIMNLRNLERVLAREEEVKKR-----------A---IVHKAVYTGPQLRYLSKDGYSYLEFSKGVSFQ  252 (360)
Q Consensus       194 EA~~TE~~N~~SL~~~~~~EeekKk~-----------~---~~~k~~~~gP~ir~~S~~~~~~i~f~d~~~~~  252 (360)
                      -++..|+.-...+|+|+.....+++.           .   ........-|+|||+|+..+++|+|+.++.||
T Consensus        17 ~eKk~EEeK~eTInKLLkkqa~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~IR~v~~~~G~~vs~P~~~~~P   89 (89)
T PF04795_consen   17 SEKKLEEEKMETINKLLKKQATRKKREPKDKEGEEDSAQEKKRRAPKPNPPMIRWVSNKNGSRVSVPEEMGLP   89 (89)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhccccccccccCCCCCEEEEEECCCceEEEecCCCCCC
Confidence            34556777777888888655421110           0   11123367799999999999999999887654

>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]

Probab=89.84  E-value=0.19  Score=53.29  Aligned_cols=36  Identities=14%  Similarity=0.362  Sum_probs=15.5

Q ss_pred             cHHHHHHHhhhhhhhhhhhhhcccchhccccccccc
Q 018130           24 GKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEE   59 (360)
Q Consensus        24 GnRM~kLL~eE~e~De~f~~~~~F~Eee~D~ey~~e   59 (360)
                      --.++.|+++..++++.--+...=..++.|++|.-.
T Consensus       440 D~~~~~~~~e~~~~edd~~d~~~de~~e~Dedf~~~  475 (615)
T KOG0526|consen  440 DEYLATLKAEDRDEEDDSDDSSTDEDEEEDEDFKPG  475 (615)
T ss_pred             chHHhhhccccchhhhcccccccccchhhhhhcccC
Confidence            345666665544333221111222224556666643

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=89.59  E-value=0.19  Score=52.09  Aligned_cols=7  Identities=29%  Similarity=0.064  Sum_probs=3.7

Q ss_pred             CCCcccc
Q 018130            9 EDAPVFL   15 (360)
Q Consensus         9 ~~~~l~~   15 (360)
                      ++.||-.
T Consensus        12 ~ddWi~~   18 (458)
T PF10446_consen   12 EDDWIRQ   18 (458)
T ss_pred             hhhhhhc
Confidence            3457743

>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []

Probab=86.34  E-value=3.8  Score=39.26  Aligned_cols=7  Identities=0%  Similarity=0.164  Sum_probs=3.9

Q ss_pred             ceeeEee
Q 018130          240 YSYLEFS  246 (360)
Q Consensus       240 ~~~i~f~  246 (360)
                      +++|.|.
T Consensus       231 GP~ir~~  237 (240)
T PF05764_consen  231 GPVIRYH  237 (240)
T ss_pred             CCeEEEE
Confidence            3666654

They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]

Probab=80.28  E-value=0.83  Score=41.03  Aligned_cols=40  Identities=28%  Similarity=0.415  Sum_probs=34.6

Q ss_pred             CCCCCCCCCcccccCCCCcccCCCCCCCCCCCHHHHHHHH
Q 018130          257 TTSVPYPERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIR  296 (360)
Q Consensus       257 ~~~~~~P~k~~C~iTg~~a~Y~DP~T~lpy~~~~~fk~ir  296 (360)
                      ++++..|.++.|.|-|.+.+|.|-.-|-.||++.|+++=.
T Consensus       110 a~p~~KP~r~fCaVCG~~S~ysC~~CG~kyCsv~C~~~Hn  149 (156)
T KOG3362|consen  110 AKPSFKPLRKFCAVCGYDSKYSCVNCGTKYCSVRCLKTHN  149 (156)
T ss_pred             cCCCCCCcchhhhhcCCCchhHHHhcCCceeechhhhhcc
Confidence            3445568899999999999999999999999999998643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	360
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 52/368 (14%), Positives = 110/368 (29%), Gaps = 89/368 (24%)

Query: 7   SKEDAPVFLDRSSRVTRGKRMNKLLDDENEED-EAFWNQDALKEEENDDNYEEEQEIADE 65
           SKE+    +     V+   R+   L  + EE  + F       EE    NY+    +   
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV------EEVLRINYK---FLMSP 97

Query: 66  FDSDFDEDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKL--DSPDKDVK 123
             +  ++ +P     +  E  +R++   + +F    +++ +   K+   L    P K+V 
Sbjct: 98  IKT--EQRQPSMMTRMYIEQRDRLYNDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 124 SNEQSILPENHDVPNDVEGERIIRKSTRTAVVVRQAER-------------------DAI 164
                           ++G     K+     V    +                    + +
Sbjct: 155 ----------------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 165 RAALQATMKPIKRKKEGEEKRMTQEEMLLEAAQTEIMNL---RNLERVLAREEEVKKRAI 221
              LQ  +  I           +  ++ + + Q E+  L   +  E  L     V+    
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 222 VHKA--------VYTGPQ--LRYLSKDGYSYL---EFSKGVS-------FQSELSTTSVP 261
              A        + T  +    +LS    +++     S  ++           L      
Sbjct: 259 W-NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 262 YPERAV----CAVTGLPAKYRD-PKT--GLPYATKEAFKIIRERFVD--KSSGIRKAMDM 312
            P   +      ++ +    RD   T     +   +    I E  ++  + +  RK    
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK---- 373

Query: 313 GTLFDSLS 320
             +FD LS
Sbjct: 374 --MFDRLS 379

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	94.27
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	94.18

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2

Probab=94.27  E-value=0.022  Score=42.59  Aligned_cols=34  Identities=21%  Similarity=0.516  Sum_probs=29.3

Q ss_pred             CCCCcccccCC----CCcccCCCCCCCCCCCHHHHHHH
Q 018130          262 YPERAVCAVTG----LPAKYRDPKTGLPYATKEAFKII  295 (360)
Q Consensus       262 ~P~k~~C~iTg----~~a~Y~DP~T~lpy~~~~~fk~i  295 (360)
                      .++..+|.|=+    .+++|++|.=+++|+++.+|+.=
T Consensus         8 m~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~H   45 (59)
T 1x4s_A            8 MEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH   45 (59)
T ss_dssp             CCCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHHH
T ss_pred             CCCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHHH
Confidence            34467999987    58999999999999999999953

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.18  E-value=0.05  Score=40.23  Aligned_cols=34  Identities=29%  Similarity=0.564  Sum_probs=30.7

Q ss_pred             CcccccCCCCcccCCCCCCCCCCCHHHHHHHHHc
Q 018130          265 RAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRER  298 (360)
Q Consensus       265 k~~C~iTg~~a~Y~DP~T~lpy~~~~~fk~ir~~  298 (360)
                      ..+|.|=|.+++|++|.=+++|+++.+|+.-+..
T Consensus        12 ~~~C~vC~~~~kY~CPrC~~~yCSl~C~k~Hk~~   45 (56)
T 2yqq_A           12 TVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQ   45 (56)
T ss_dssp             CCCCTTTCSCCSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCccCcCcCCCeeeCCCCCCCeeCHHHHHHHHhh
Confidence            4579998889999999999999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	360
d1x4sa1	46	Zinc finger HIT domain containing protein 2, ZNHIT	81.38

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.38  E-value=0.25  Score=33.45  Aligned_cols=29  Identities=24%  Similarity=0.673  Sum_probs=24.9

Q ss_pred             cccccCC-CCcccCCCCCCCCCCCHHHHHH
Q 018130          266 AVCAVTG-LPAKYRDPKTGLPYATKEAFKI  294 (360)
Q Consensus       266 ~~C~iTg-~~a~Y~DP~T~lpy~~~~~fk~  294 (360)
                      .+|.|=+ .+++|++|.=+++|+++.+||.
T Consensus         8 ~lC~vC~~~~~KY~CP~C~~~yCSL~CyK~   37 (46)
T d1x4sa1           8 GFCPAGEVQPARYTCPRCNAPYCSLRCYRT   37 (46)
T ss_dssp             CSSCTTCCEEECEECTTTCCEESSHHHHHH
T ss_pred             ccChhhhCccccccCCCCCCceechHHHhh
Confidence            3677665 4699999999999999999995