Citrus Sinensis ID: 018141

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
MLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDMT
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcHHHHHHHHHHHHHHHHHHHcccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHcc
MLGIYLQASWITSLFFSIIISFLWIYTEPIlillhqdpsiSKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFehtwegfsfeSFSFILTILKLALPSAAMVCLEYWAFEILVFLAglmpnselTTSLIAMCVNTESVAYMITYGLSAAASTrvsnelgagnpdqakNAMAVTVKLSVLLALVVVLALGfghniwagffsnsPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRkwtkvdmt
MLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLitlrrkwtkvdmt
MLGIYLQAswitslffsiiisflwiYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMavtvklsvllalvvvlalGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDMT
**GIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAAST***************NAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTK****
MLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDM*
MLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDMT
MLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKV***
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
iiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
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MLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDMT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query360 2.2.26 [Sep-21-2011]
Q9LUH2477 MATE efflux family protei yes no 0.997 0.752 0.668 1e-136
Q9LUH3469 MATE efflux family protei no no 0.991 0.761 0.661 1e-133
Q9SIA5476 MATE efflux family protei no no 0.983 0.743 0.401 1e-67
Q9SIA3476 MATE efflux family protei no no 0.972 0.735 0.391 4e-64
Q8RWF5483 MATE efflux family protei no no 0.977 0.728 0.385 5e-64
Q9SIA1477 MATE efflux family protei no no 0.977 0.737 0.385 5e-62
Q9SIA4476 MATE efflux family protei no no 0.986 0.745 0.394 6e-62
Q8GXM8476 MATE efflux family protei no no 0.983 0.743 0.367 7e-61
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.972 0.690 0.366 1e-54
A1L1P9 590 Multidrug and toxin extru yes no 0.922 0.562 0.329 4e-45
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function desciption
 Score =  484 bits (1247), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/359 (66%), Positives = 288/359 (80%)

Query: 1   MLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGV 60
           MLG++LQ+S I SL FSI+I+  W +TE I  LL QDPSISKQAALYMKY  PGL+AYG 
Sbjct: 116 MLGVHLQSSCIVSLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPGLLAYGF 175

Query: 61  IQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLM 120
           +QNILRF QTQSI+ PL+ FS +P+ I+   AY  VY+  LGF GA +A S+SLWI+ L 
Sbjct: 176 LQNILRFCQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSISLWIAFLS 235

Query: 121 LVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNS 180
           L TYV+C++KF+ TW GFS ESF +I+  L L+LPSAAMVCLEYWAFEILVFLAG+MPN 
Sbjct: 236 LGTYVMCSEKFKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVMPNP 295

Query: 181 ELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLAL 240
           E+ TSL+A+CVNTE+++YM+TYGLSAAASTRVSNELGAGN   AK A +V+VKLS++LAL
Sbjct: 296 EINTSLVAICVNTEAISYMLTYGLSAAASTRVSNELGAGNVKGAKKATSVSVKLSLVLAL 355

Query: 241 VVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLA 300
            VV+ L  GH+ W G FS+S  I +EFASL   LA SITLDS+QGVLSGVARGCGWQ L 
Sbjct: 356 GVVIVLLVGHDGWVGLFSDSYVIKEEFASLRFFLAASITLDSIQGVLSGVARGCGWQRLV 415

Query: 301 VWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDM 359
              NLATFY IGMPIAA  GFKL  Y KGLWIGLICG+FCQ+SSLLL+T+ RKWTK+++
Sbjct: 416 TVINLATFYLIGMPIAAFCGFKLKFYAKGLWIGLICGIFCQSSSLLLMTIFRKWTKLNV 474
Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
224114908 485 predicted protein [Populus trichocarpa] 1.0 0.742 0.775 1e-152
255574668 484 TRANSPARENT TESTA 12 protein, putative [ 0.997 0.741 0.746 1e-150
302142981438 unnamed protein product [Vitis vinifera] 1.0 0.821 0.755 1e-146
225461494 487 PREDICTED: MATE efflux family protein AL 1.0 0.739 0.755 1e-146
297835374 476 hypothetical protein ARALYDRAFT_479865 [ 0.994 0.752 0.675 1e-136
225461496 493 PREDICTED: MATE efflux family protein AL 1.0 0.730 0.713 1e-134
18403810 477 mate efflux domain-containing protein [A 0.997 0.752 0.668 1e-134
302142980438 unnamed protein product [Vitis vinifera] 1.0 0.821 0.713 1e-134
147858860 1134 hypothetical protein VITISV_039558 [Viti 0.947 0.300 0.719 1e-134
15229468 469 mate efflux domain-containing protein [A 0.991 0.761 0.661 1e-131
>gi|224114908|ref|XP_002316890.1| predicted protein [Populus trichocarpa] gi|222859955|gb|EEE97502.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 279/360 (77%), Positives = 314/360 (87%)

Query: 1   MLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGV 60
           MLGIYLQAS I S  F I IS +W YTEPIL+LLHQD  +S  AALYMKYLIPGL AYG+
Sbjct: 115 MLGIYLQASCIISFIFCITISVIWFYTEPILLLLHQDAHVSMTAALYMKYLIPGLFAYGI 174

Query: 61  IQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLM 120
           +QNILRFLQTQS+V+P + FS +P+ IH GIAYA V+ T+LGFKGA LAAS+SLWIS LM
Sbjct: 175 MQNILRFLQTQSVVMPPVVFSLVPLCIHIGIAYALVHYTALGFKGAPLAASISLWISFLM 234

Query: 121 LVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNS 180
           L  YV+CAKKFEHTW GFSFESF +IL  LKLALPSAAMVCLEYWAFEILVFLAGLMP+S
Sbjct: 235 LAIYVICAKKFEHTWAGFSFESFHYILHDLKLALPSAAMVCLEYWAFEILVFLAGLMPSS 294

Query: 181 ELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLAL 240
           E++TSLIA+CVNTE+VAYM+TYGLSAAASTRVSNELG GNP++AKNAMAVT+KLSVLLAL
Sbjct: 295 EISTSLIAICVNTETVAYMLTYGLSAAASTRVSNELGEGNPERAKNAMAVTLKLSVLLAL 354

Query: 241 VVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLA 300
           +VVLAL FGHNIWAG FS+SP I KEFAS+ P LA+SITLDSVQGV SGVARGCGWQHLA
Sbjct: 355 LVVLALAFGHNIWAGLFSSSPTIAKEFASMAPFLAISITLDSVQGVFSGVARGCGWQHLA 414

Query: 301 VWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDMT 360
           V+ANLATFY IGMP+A +LGFKL LYVKGLWIGLI GL CQA +LLLIT+R  WT  D++
Sbjct: 415 VYANLATFYCIGMPVACVLGFKLKLYVKGLWIGLISGLCCQAGTLLLITIRTNWTATDLS 474

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255574668|ref|XP_002528243.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223532329|gb|EEF34128.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302142981|emb|CBI20276.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461494|ref|XP_002282547.1| PREDICTED: MATE efflux family protein ALF5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297835374|ref|XP_002885569.1| hypothetical protein ARALYDRAFT_479865 [Arabidopsis lyrata subsp. lyrata] gi|297331409|gb|EFH61828.1| hypothetical protein ARALYDRAFT_479865 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225461496|ref|XP_002282551.1| PREDICTED: MATE efflux family protein ALF5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18403810|ref|NP_566730.1| mate efflux domain-containing protein [Arabidopsis thaliana] gi|75274226|sp|Q9LUH2.1|ALF5_ARATH RecName: Full=MATE efflux family protein ALF5; AltName: Full=Protein ABERRANT LATERAL ROOT FORMATION 5; AltName: Full=Protein DTX19 gi|13384114|gb|AAK21273.1|AF337954_1 aberrant lateral root formation 5 [Arabidopsis thaliana] gi|9294512|dbj|BAB02774.1| unnamed protein product [Arabidopsis thaliana] gi|17064870|gb|AAL32589.1| Unknown protein [Arabidopsis thaliana] gi|332643256|gb|AEE76777.1| mate efflux domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|302142980|emb|CBI20275.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147858860|emb|CAN78689.1| hypothetical protein VITISV_039558 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15229468|ref|NP_188997.1| mate efflux domain-containing protein [Arabidopsis thaliana] gi|75274227|sp|Q9LUH3.1|LAL5_ARATH RecName: Full=MATE efflux family protein LAL5; AltName: Full=Protein DTX18; AltName: Full=Protein LIKE ALF5 gi|9294511|dbj|BAB02773.1| unnamed protein product [Arabidopsis thaliana] gi|17979043|gb|AAL49789.1| unknown protein [Arabidopsis thaliana] gi|20465841|gb|AAM20025.1| unknown protein [Arabidopsis thaliana] gi|332643255|gb|AEE76776.1| mate efflux domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
TAIR|locus:2088020477 ALF5 "AT3G23560" [Arabidopsis 0.997 0.752 0.612 1.5e-113
TAIR|locus:2088010469 AT3G23550 "AT3G23550" [Arabido 0.988 0.759 0.608 2e-111
TAIR|locus:2156737486 AT5G52450 "AT5G52450" [Arabido 0.983 0.728 0.415 2e-72
TAIR|locus:2027834476 AT1G73700 "AT1G73700" [Arabido 0.986 0.745 0.414 7.7e-71
TAIR|locus:2040839480 AT2G34360 "AT2G34360" [Arabido 0.963 0.722 0.402 8.2e-67
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.908 0.679 0.409 9.4e-66
TAIR|locus:2037723487 AT1G15150 "AT1G15150" [Arabido 0.902 0.667 0.390 1.4e-64
TAIR|locus:2050190476 DTX1 "AT2G04040" [Arabidopsis 0.911 0.689 0.409 3.3e-63
TAIR|locus:2037848487 AT1G15160 "AT1G15160" [Arabido 0.902 0.667 0.390 6.9e-63
TAIR|locus:2037868482 AT1G15180 "AT1G15180" [Arabido 0.908 0.678 0.397 8.8e-63
TAIR|locus:2088020 ALF5 "AT3G23560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
 Identities = 220/359 (61%), Positives = 261/359 (72%)

Query:     1 MLGIYLQAXXXXXXXXXXXXXXXXXYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGV 60
             MLG++LQ+                 +TE I  LL QDPSISKQAALYMKY  PGL+AYG 
Sbjct:   116 MLGVHLQSSCIVSLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPGLLAYGF 175

Query:    61 IQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLM 120
             +QNILRF QTQSI+ PL+ FS +P+ I+   AY  VY+  LGF GA +A S+SLWI+ L 
Sbjct:   176 LQNILRFCQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSISLWIAFLS 235

Query:   121 LVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNS 180
             L TYV+C++KF+ TW GFS ESF +I+  L L+LPSAAMVCLEYWAFEILVFLAG+MPN 
Sbjct:   236 LGTYVMCSEKFKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVMPNP 295

Query:   181 ELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMXXXXXXXXXXXX 240
             E+ TSL+A+CVNTE+++YM+TYGLSAAASTRVSNELGAGN   AK A             
Sbjct:   296 EINTSLVAICVNTEAISYMLTYGLSAAASTRVSNELGAGNVKGAKKATSVSVKLSLVLAL 355

Query:   241 XXXXXXGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLA 300
                     GH+ W G FS+S  I +EFASL   LA SITLDS+QGVLSGVARGCGWQ L 
Sbjct:   356 GVVIVLLVGHDGWVGLFSDSYVIKEEFASLRFFLAASITLDSIQGVLSGVARGCGWQRLV 415

Query:   301 VWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDM 359
                NLATFY IGMPIAA  GFKL  Y KGLWIGLICG+FCQ+SSLLL+T+ RKWTK+++
Sbjct:   416 TVINLATFYLIGMPIAAFCGFKLKFYAKGLWIGLICGIFCQSSSLLLMTIFRKWTKLNV 474
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009636 "response to toxic substance" evidence=ISS
TAIR|locus:2088010 AT3G23550 "AT3G23550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027834 AT1G73700 "AT1G73700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040839 AT2G34360 "AT2G34360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050190 DTX1 "AT2G04040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LUH2ALF5_ARATHNo assigned EC number0.66850.99720.7526yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XI.3816.1
hypothetical protein (439 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-122
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 6e-42
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 2e-37
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 2e-37
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 3e-30
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 7e-28
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 2e-25
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 9e-22
pfam01554161 pfam01554, MatE, MatE 8e-19
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-18
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-16
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 2e-14
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 4e-14
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 1e-12
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 4e-11
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 9e-11
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 6e-10
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 1e-09
pfam01554161 pfam01554, MatE, MatE 6e-08
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 3e-07
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 1e-05
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 7e-05
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 3e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 9e-04
cd13134 438 cd13134, MATE_like_8, Uncharacterized subfamily of 0.002
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  357 bits (919), Expect = e-122
 Identities = 167/357 (46%), Positives = 236/357 (66%), Gaps = 1/357 (0%)

Query: 1   MLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGV 60
           ++G+YLQ + +  L   + IS LW+ TEPIL+LL QDP I++ A  Y+++LIPGL AY +
Sbjct: 78  LVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARLAGEYLRWLIPGLFAYAL 137

Query: 61  IQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLM 120
            + + R+LQ Q IV+PL++ S + + ++  + Y  V++  LGF GA+LA S+S W+ +++
Sbjct: 138 FEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGFIGAALATSISYWLIVVL 197

Query: 121 LVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNS 180
           L+ Y+  +K  + TW GFS E+F      LKLA+PSA M+CLE+WAFEILV LAGL+P  
Sbjct: 198 LLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLEWWAFEILVLLAGLLP-G 256

Query: 181 ELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLAL 240
            +  +  ++C+ T S+ YMI  G+S AAS RV NELGAGNP +AK A  V + LS+++ +
Sbjct: 257 TVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKRAKLAAIVALILSLVIGV 316

Query: 241 VVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLA 300
           VV + L    ++WA  F++  E+I   A L P+LAL    D +Q VLSGV RGCG Q L 
Sbjct: 317 VVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGLQAVLSGVLRGCGRQKLG 376

Query: 301 VWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKV 357
            + NL  +Y IG+P+  +L F L L +KGLWIGLI GL  QA  LLLI LR  W K 
Sbjct: 377 AYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAVILLLIILRTDWDKE 433

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 360
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 99.97
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.96
PRK10459492 colanic acid exporter; Provisional 99.95
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.95
PRK00187 464 multidrug efflux protein NorA; Provisional 99.94
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.94
PRK10189 478 MATE family multidrug exporter; Provisional 99.94
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.94
PRK01766 456 multidrug efflux protein; Reviewed 99.93
COG2244480 RfbX Membrane protein involved in the export of O- 99.9
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.87
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.85
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 99.6
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.6
TIGR01695 502 mviN integral membrane protein MviN. This model re 99.51
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.46
PRK15099 416 O-antigen translocase; Provisional 99.38
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.28
PF03023 451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.27
COG0728 518 MviN Uncharacterized membrane protein, putative vi 99.03
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.76
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 98.66
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.65
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.48
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.47
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.45
PRK10459 492 colanic acid exporter; Provisional 98.45
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.18
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.87
COG2244 480 RfbX Membrane protein involved in the export of O- 97.85
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.56
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 96.96
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 96.3
COG4267467 Predicted membrane protein [Function unknown] 90.25
COG4267 467 Predicted membrane protein [Function unknown] 82.52
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-49  Score=366.51  Aligned_cols=355  Identities=26%  Similarity=0.409  Sum_probs=335.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCchhHHHH
Q 018141            1 MLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIF   79 (360)
Q Consensus         1 ~v~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   79 (360)
                      ++++..+++++++++++++.+++ +.+.+|++.+++.++|+.+.+.+|+++..++.|+..+....++.+|++||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            46789999999999999888876 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhh-cC-CCcchhHHHHHHHHHHHHHHHHHHHHhccc-cccccCCCCHHhHHhHHHHHHhHhHh
Q 018141           80 FSALPMAIHFGIAYAFVYL-TS-LGFKGASLAASVSLWISMLMLVTYVLCAKK-FEHTWEGFSFESFSFILTILKLALPS  156 (360)
Q Consensus        80 ~~~~~~~~~i~l~~~~i~~-~~-~g~~g~ala~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~p~  156 (360)
                      .++++.++|+++|++++++ ++ +|+.|+++||++++.++.++.++++.++++ ......+..+.+++.+|++++.|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999999 57 999999999999999999999999977664 22232334345689999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 018141          157 AAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSV  236 (360)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  236 (360)
                      .+++..........+.+++++|  ++++|+|+++.++.++.++++.|++++.+|+++|++|+||+|++|+..+.+.+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Q 018141          237 LLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIA  316 (360)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~  316 (360)
                      .++...+.+++++++++.++|++|+|+.+.+.+++++.++..++++.+....+.+||.||+|.++..++.+.|.+.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCcceehHHHHHHHHHHHHHHHHHHhccCchhhh
Q 018141          317 AILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVD  358 (360)
Q Consensus       317 ~~l~~~~~~g~~G~~~a~~~~~~~~~i~~~~~~~~~~~~~~~  358 (360)
                      +++.... +|..|+|++...++.+..+...++++|.+|+++.
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKA  449 (455)
T ss_pred             HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            9997765 8999999999999999999999999999998754

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 2e-12
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 3e-04
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 145/341 (42%), Gaps = 16/341 (4%)
Query: 27  TEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMA 86
           T+ I+  +  + +++ +   YM  +I  + AY + Q +  F    S+  P +    + + 
Sbjct: 112 TQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLL 171
Query: 87  IHFGIAYAFVY----LTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEH--TWEGFSF 140
           ++  + + FVY       LG  G  +A ++  WI +L+L+ Y++ +K+  H   +E F  
Sbjct: 172 LNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHK 231
Query: 141 ESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMI 200
                ++ + +L  P AA +  E   F ++  L   + ++ +    +A+  N  S+ +M 
Sbjct: 232 PQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVAL--NFSSLVFMF 289
Query: 201 TYGLSAAASTRVSNELGAGNPDQAKNAMXXXXXXXXXXXXXXXXXXGFGHNIWAGFFSNS 260
              + AA S RV ++LG  +   A  A                          A  ++ +
Sbjct: 290 PMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTEN 349
Query: 261 PEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILG 320
             ++     L    A+   +D+VQ V +G  RG             +++ +G+P   ILG
Sbjct: 350 QVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILG 409
Query: 321 F-----KLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTK 356
                 +  L  KG W+G I GL   +++ L++  R  W +
Sbjct: 410 MTNWLTEQPLGAKGFWLGFIIGL---SAAALMLGQRLYWLQ 447
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-66
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  216 bits (553), Expect = 1e-66
 Identities = 79/356 (22%), Positives = 151/356 (42%), Gaps = 13/356 (3%)

Query: 3   GIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQ 62
              +    I +L  S+ I  +   T+ I+  +  + +++ +   YM  +I  + AY + Q
Sbjct: 88  PFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQ 147

Query: 63  NILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVY----LTSLGFKGASLAASVSLWISM 118
            +  F    S+  P +    + + ++  + + FVY       LG  G  +A ++  WI +
Sbjct: 148 ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIML 207

Query: 119 LMLVTYVLCAKKFEH--TWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGL 176
           L+L+ Y++ +K+  H   +E F       ++ + +L  P AA +  E   F ++  L   
Sbjct: 208 LLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAP 267

Query: 177 MPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSV 236
           + ++ +    +A+  N  S+ +M    + AA S RV ++LG  +   A  A  V +   +
Sbjct: 268 LGSTVVAAHQVAL--NFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGL 325

Query: 237 LLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGW 296
             A +  L         A  ++ +  ++     L    A+   +D+VQ V +G  RG   
Sbjct: 326 ATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKD 385

Query: 297 QHLAVWANLATFYFIGMPIAAILGFKLSLY-----VKGLWIGLICGLFCQASSLLL 347
                     +++ +G+P   ILG    L       KG W+G I GL   A  L  
Sbjct: 386 MTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQ 441
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 99.86
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=2.2e-42  Score=322.05  Aligned_cols=353  Identities=22%  Similarity=0.352  Sum_probs=323.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCchhHHHHH
Q 018141            1 MLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFF   80 (360)
Q Consensus         1 ~v~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (360)
                      +.++.+++++.+..+.+++..++..+.+|++.+++.|++..+.+.+|+++..++.++..+....++++|++||++.++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  165 (460)
T 3mkt_A           86 KIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI  165 (460)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            46789999999999999998877888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh-c---CCCcchhHHHHHHHHHHHHHHHHHHHHhcccccc-c-cCCCCHHhHHhHHHHHHhHh
Q 018141           81 SALPMAIHFGIAYAFVYL-T---SLGFKGASLAASVSLWISMLMLVTYVLCAKKFEH-T-WEGFSFESFSFILTILKLAL  154 (360)
Q Consensus        81 ~~~~~~~~i~l~~~~i~~-~---~~g~~g~ala~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~  154 (360)
                      ++++.++|+++++++++. +   ++|+.|+++++.+++.+..++.+++.+++++.+. + +++..+.+++..|++++++.
T Consensus       166 ~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  245 (460)
T 3mkt_A          166 GFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF  245 (460)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhh
Confidence            999999999999999986 3   7999999999999999999998888865543322 1 12233446789999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 018141          155 PSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKL  234 (360)
Q Consensus       155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~  234 (360)
                      |.++++....+....++.+++++|  ++++++|++++++.++..++..+++++..|.+++++|+||+|+.++..+++.+.
T Consensus       246 p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~  323 (460)
T 3mkt_A          246 PVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMT  323 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999996  889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 018141          235 SVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMP  314 (360)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~  314 (360)
                      ...++++.++++.++++++.++|.+|+|..+.+.+++++++++.++.+++....+.+++.||++.+++.++.+.|++++|
T Consensus       324 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~  403 (460)
T 3mkt_A          324 GLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLP  403 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888999999999999999999999999999999999999999999998899999


Q ss_pred             HHHHHHHH----hC-CCcceehHHHHHHHHHHHHHHHHHHhccCch
Q 018141          315 IAAILGFK----LS-LYVKGLWIGLICGLFCQASSLLLITLRRKWT  355 (360)
Q Consensus       315 ~~~~l~~~----~~-~g~~G~~~a~~~~~~~~~i~~~~~~~~~~~~  355 (360)
                      +++++...    ++ +|+.|+|+++.+++.+.++...++++|..++
T Consensus       404 l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~~  449 (460)
T 3mkt_A          404 TGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQ  449 (460)
T ss_dssp             HHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCCS
T ss_pred             HHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999765    55 9999999999999999998887777665443
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00