Citrus Sinensis ID: 018148

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
MFWFFDCLTEESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEIELDDDEDDDDIDEDEDDEGDDDEDEDEDDEEDEEDDEGKTKKKSSAGSKKSGRQQAGDAQQGERPPECKQQ
ccHHHHcccHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccccccccHHHHHHccHHHHHHHcHHHHHHHcccccEEEEEccccccEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEEccccccHHHHHHHcccccccccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHHccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccHHHHHHHHcHHHHHHHHHHccHHHHHHHHccEEEcccccccEEEEEEEcccccccccEEEEEEEEEcccccEEEEccccEEEEcccccEEEEEEEEccccccccEEEEEEEcccccHHccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccc
mfwffdclteeSFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGvvegapnevamdqeedkateekgvpdfwltamknndvlseeiTERDEGALKFLKDikwfriddpkgfklefyfdpnpyfknsvltktyhmidedepiLEKAIGteiewypgkcltqkllkkkpkkgsknakpitkteecesffnffnppqvpeddedidEDTAEELQNQMEqdydigstirdkiiphavswftgeaiqeeeieldddeddddidededdegdddedededdeedeeddegktkkkssagskksgrqqagdaqqgerppeckqq
MFWFFDCLTEESFFVVQNKLQNLagqhsdvlekltPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAmdqeedkateekgvpdfwltAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCltqkllkkkpkkgsknakpitkteecESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEeeieldddeddddidededdegdddedededdeedeeddegktkkkssagskksgrqqagdaqqgerppeckqq
MFWFFDCLTEESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGkcltqkllkkkpkkgsknakPITKTEECESFFNFFNPPQVPeddedidedtaeeLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQeeeieldddeddddidededdegdddedededdeedeeddegktkkkssagskksgRQQAGDAQQGERPPECKQQ
*FWFFDCLTEESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEG********************PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLL**********************FFNFF***************************YDIGSTIRDKIIPHAVSWFTGEAI****************************************************************************
MFWFFD*LTEESFFVVQNK**************LTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQ********************EECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEE*******************************************************************ECKQ*
MFWFFDCLTEESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAM**********KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLK************ITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEIE**********************************************************************
MFWFFDCLTEESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAM********EEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQE**************************************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MFWFFDCLTEESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVxxxxxxxxxxxxxxxxxxxxxLEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEIELDDDEDDDDIDEDEDDEGDDDEDEDEDDEEDEEDDEGKTKKKSSAGSKKSGRQQAGDAQQGERPPECKQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query360 2.2.26 [Sep-21-2011]
P28656391 Nucleosome assembly prote yes no 0.722 0.664 0.400 2e-45
Q5R4D4391 Nucleosome assembly prote no no 0.722 0.664 0.397 4e-45
A6H767391 Nucleosome assembly prote yes no 0.722 0.664 0.393 4e-45
P55209391 Nucleosome assembly prote yes no 0.722 0.664 0.400 5e-45
P78920379 Putative nucleosome assem yes no 0.819 0.778 0.363 1e-44
Q28EB4393 Nucleosome assembly prote yes no 0.725 0.664 0.389 2e-44
Q78ZA7375 Nucleosome assembly prote no no 0.747 0.717 0.377 2e-44
Q99733375 Nucleosome assembly prote no no 0.747 0.717 0.386 3e-44
Q9Z2G8390 Nucleosome assembly prote yes no 0.716 0.661 0.392 9e-44
Q7ZY81393 Nucleosome assembly prote N/A no 0.725 0.664 0.389 1e-43
>sp|P28656|NP1L1_MOUSE Nucleosome assembly protein 1-like 1 OS=Mus musculus GN=Nap1l1 PE=1 SV=2 Back     alignment and function desciption
 Score =  183 bits (464), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/297 (40%), Positives = 168/297 (56%), Gaps = 37/297 (12%)

Query: 16  VQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQ 75
           +Q +L  L    +  +E L   V++RV  L+ +Q +  ++EAKF+EE   LE KY  LYQ
Sbjct: 52  LQERLDGLVDTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQ 111

Query: 76  PMYTKRYEIVNGVVEGAPNEVAMDQ-EEDKATEE-------------------KGVPDFW 115
           P++ KR+EI+N + E    E      EED+ +EE                   KG+P+FW
Sbjct: 112 PLFDKRFEIINAIYEPTEEECEWKPDEEDEVSEELKEKAKIEDEKKDEEKEDPKGIPEFW 171

Query: 116 LTAMKNNDVLSEEITERDEGALKFLKDIKWFRID--DPKGFKLEFYFDPNPYFKNSVLTK 173
           LT  KN D+LS+ + E DE  LK LKDIK    D   P  F LEF+F+PN YF N VLTK
Sbjct: 172 LTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNDYFTNEVLTK 231

Query: 174 TYHMIDE---------DEPILEKAIGTEIEWYPGKCLT-QKLLKKKPKKGSKNAKPITKT 223
           TY M  E         D P +    G +I+W  GK +T + + KK+  KG    + +TKT
Sbjct: 232 TYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKT 291

Query: 224 EECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFT 280
              +SFFNFF PP+VPE+  D+D+D AE +   +  D++IG  +R++IIP +V +FT
Sbjct: 292 VSNDSFFNFFAPPEVPENG-DLDDD-AEAI---LAADFEIGHFLRERIIPRSVLYFT 343
May be involved in modulating chromatin formation and contribute to regulation of cell proliferation.
Mus musculus (taxid: 10090)
>sp|Q5R4D4|NP1L1_PONAB Nucleosome assembly protein 1-like 1 OS=Pongo abelii GN=NAP1L1 PE=2 SV=1 Back     alignment and function description
>sp|A6H767|NP1L1_BOVIN Nucleosome assembly protein 1-like 1 OS=Bos taurus GN=NAP1L1 PE=2 SV=1 Back     alignment and function description
>sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1 Back     alignment and function description
>sp|P78920|YGNB_SCHPO Putative nucleosome assembly protein C2D10.11C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2D10.11c PE=2 SV=2 Back     alignment and function description
>sp|Q28EB4|NP1L1_XENTR Nucleosome assembly protein 1-like 1 OS=Xenopus tropicalis GN=nap1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q78ZA7|NP1L4_MOUSE Nucleosome assembly protein 1-like 4 OS=Mus musculus GN=Nap1l4 PE=1 SV=1 Back     alignment and function description
>sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 OS=Homo sapiens GN=NAP1L4 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z2G8|NP1L1_RAT Nucleosome assembly protein 1-like 1 OS=Rattus norvegicus GN=Nap1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZY81|NPL1B_XENLA Nucleosome assembly protein 1-like 1-B OS=Xenopus laevis GN=nap1l1-b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
225444889368 PREDICTED: nucleosome assembly protein 1 0.933 0.913 0.801 1e-138
359482848381 PREDICTED: nucleosome assembly protein 1 0.958 0.905 0.798 1e-136
372477765377 nucleosome assembly protein [Malus x dom 0.961 0.917 0.76 1e-136
297738653386 unnamed protein product [Vitis vinifera] 0.933 0.870 0.770 1e-136
224087993378 nucleosome/chromatin assembly factor gro 0.961 0.915 0.806 1e-129
255546129372 nucleosome assembly protein, putative [R 0.947 0.916 0.831 1e-128
449446598375 PREDICTED: nucleosome assembly protein 1 0.958 0.92 0.805 1e-126
356530387365 PREDICTED: nucleosome assembly protein 1 0.925 0.912 0.732 1e-125
255641276363 unknown [Glycine max] 0.933 0.925 0.752 1e-125
45433315377 nucleosome assembly protein 1-like prote 0.961 0.917 0.782 1e-125
>gi|225444889|ref|XP_002281573.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 279/348 (80%), Positives = 310/348 (89%), Gaps = 12/348 (3%)

Query: 15  VVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLY 74
            ++NKLQNLAGQHSDVLE LTP VRKRVE LREIQ +HDELEAKFFEERAALEAKYQKLY
Sbjct: 31  ALKNKLQNLAGQHSDVLENLTPKVRKRVETLREIQGQHDELEAKFFEERAALEAKYQKLY 90

Query: 75  QPMYTKRYEIVNGVVE--GAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITER 132
           QP+Y+KRY+IVNGVVE  G  NEV MDQE DKA EEKGVPDFWLTAMK N+VL+EEI+ER
Sbjct: 91  QPLYSKRYDIVNGVVEVDGVTNEVTMDQE-DKA-EEKGVPDFWLTAMKTNEVLAEEISER 148

Query: 133 DEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTE 192
           DEGALK++KDIKW RID+PKGFKLEF+FD NPYFKNSVLTKTYHMIDEDEPILEKAIGTE
Sbjct: 149 DEGALKYIKDIKWCRIDNPKGFKLEFFFDTNPYFKNSVLTKTYHMIDEDEPILEKAIGTE 208

Query: 193 IEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEE 252
           IEW+PGKCLTQKLLKKKP+KGSKNAKPITKTE CESFFNFF+PPQVPEDDEDIDEDTAEE
Sbjct: 209 IEWFPGKCLTQKLLKKKPRKGSKNAKPITKTESCESFFNFFSPPQVPEDDEDIDEDTAEE 268

Query: 253 LQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEIELDDDEDDDDIDEDEDDEGDDDE 312
           LQNQMEQDYDIGSTIRDKIIPHAVSWFTGEA Q +E          D+++DED++ D+D+
Sbjct: 269 LQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAAQGDEF--------GDMEDDEDEDIDEDD 320

Query: 313 DEDEDDEEDEEDDEGKTKKKSSAGSKKSGRQQAGDAQQGERPPECKQQ 360
           DEDED+EED+E+D+ + ++ S A  KKSGR Q GD QQGERPPECKQQ
Sbjct: 321 DEDEDEEEDDEEDDDEDEEDSKAVKKKSGRAQVGDGQQGERPPECKQQ 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359482848|ref|XP_002280211.2| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 1 [Vitis vinifera] gi|297743095|emb|CBI35962.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|372477765|gb|AEX97077.1| nucleosome assembly protein [Malus x domestica] Back     alignment and taxonomy information
>gi|297738653|emb|CBI27898.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224087993|ref|XP_002308283.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222854259|gb|EEE91806.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255546129|ref|XP_002514124.1| nucleosome assembly protein, putative [Ricinus communis] gi|223546580|gb|EEF48078.1| nucleosome assembly protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449446598|ref|XP_004141058.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Cucumis sativus] gi|449488040|ref|XP_004157924.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356530387|ref|XP_003533763.1| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 4 [Glycine max] Back     alignment and taxonomy information
>gi|255641276|gb|ACU20915.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|45433315|emb|CAD27461.1| nucleosome assembly protein 1-like protein 2 [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
TAIR|locus:2164595374 NAP1;3 "AT5G56950" [Arabidopsi 0.75 0.721 0.713 1.9e-110
TAIR|locus:2050424379 NAP1;2 "AT2G19480" [Arabidopsi 0.75 0.712 0.716 3.9e-110
TAIR|locus:2120785372 NAP1;1 "AT4G26110" [Arabidopsi 0.75 0.725 0.684 8.3e-104
UNIPROTKB|B3KV44323 NAP1L1 "cDNA FLJ16112 fis, clo 0.711 0.792 0.376 1.1e-42
POMBASE|SPBC2D10.11c379 nap2 "nucleosome assembly prot 0.736 0.699 0.335 8.7e-40
ZFIN|ZDB-GENE-030131-9099349 nap1l4a "nucleosome assembly p 0.513 0.530 0.334 5.7e-38
UNIPROTKB|E1BZS2393 NAP1L1 "Uncharacterized protei 0.666 0.610 0.329 2.7e-34
MGI|MGI:1859565544 Nap1l3 "nucleosome assembly pr 0.480 0.318 0.321 4.1e-34
UNIPROTKB|Q7ZY81393 nap1l1-b "Nucleosome assembly 0.666 0.610 0.340 4.4e-34
WB|WBGene00017075316 nap-1 [Caenorhabditis elegans 0.716 0.816 0.335 4.6e-34
TAIR|locus:2164595 NAP1;3 "AT5G56950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1031 (368.0 bits), Expect = 1.9e-110, Sum P(2) = 1.9e-110
 Identities = 194/272 (71%), Positives = 218/272 (80%)

Query:    16 VQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQ 75
             ++NKLQNLAGQHSDVLE LTP +R+RVEVLREIQ +HDE+E KF EERAALEAKYQKLYQ
Sbjct:    29 LKNKLQNLAGQHSDVLENLTPKIRRRVEVLREIQGKHDEIETKFREERAALEAKYQKLYQ 88

Query:    76 PMYTKRYEIVNGV--VEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERD 133
             P+Y KRYEIVNG   VEGAP +  MDQ ++K  EEKGVP FWLTA+KNNDV+SEEITERD
Sbjct:    89 PLYNKRYEIVNGATEVEGAPEDAKMDQGDEKTAEEKGVPSFWLTALKNNDVISEEITERD 148

Query:   134 EGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEI 193
             EGAL +LKDIKW +I++PKGFKLEF+FD NPYFKN++LTK YHMIDEDEP+LEKAIGTEI
Sbjct:   149 EGALIYLKDIKWCKIEEPKGFKLEFFFDQNPYFKNTLLTKAYHMIDEDEPLLEKAIGTEI 208

Query:   194 EWYPGXXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXL 253
             +WYPG                    PITKTE+CESFFNFFNPPQVP             L
Sbjct:   209 DWYPGKCLTQKILKKKPKKGAKNAKPITKTEDCESFFNFFNPPQVPDDDEDIDEERAEEL 268

Query:   254 QNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 285
             QN MEQDYDIGSTIR+KIIPHAVSWFTGEAI+
Sbjct:   269 QNLMEQDYDIGSTIREKIIPHAVSWFTGEAIE 300
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA
GO:0006334 "nucleosome assembly" evidence=IEA;ISS
GO:0009294 "DNA mediated transformation" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0006281 "DNA repair" evidence=IGI
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2050424 NAP1;2 "AT2G19480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120785 NAP1;1 "AT4G26110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B3KV44 NAP1L1 "cDNA FLJ16112 fis, clone 3NB692001853, highly similar to NUCLEOSOME ASSEMBLY PROTEIN 1-LIKE 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
POMBASE|SPBC2D10.11c nap2 "nucleosome assembly protein Nap2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9099 nap1l4a "nucleosome assembly protein 1-like 4a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZS2 NAP1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1859565 Nap1l3 "nucleosome assembly protein 1-like 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZY81 nap1l1-b "Nucleosome assembly protein 1-like 1-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
WB|WBGene00017075 nap-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034186001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (375 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00020673001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)
   ••   0.465
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
   •    0.404

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
pfam00956236 pfam00956, NAP, Nucleosome assembly protein (NAP) 1e-100
PTZ00007337 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr 9e-71
pfam04147 809 pfam04147, Nop14, Nop14-like family 3e-07
pfam04147 809 pfam04147, Nop14, Nop14-like family 1e-06
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 3e-06
pfam05327 554 pfam05327, RRN3, RNA polymerase I specific transcr 3e-06
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 4e-06
pfam02724 583 pfam02724, CDC45, CDC45-like protein 5e-06
pfam04147 809 pfam04147, Nop14, Nop14-like family 1e-05
pfam05327 554 pfam05327, RRN3, RNA polymerase I specific transcr 2e-05
PRK05658 619 PRK05658, PRK05658, RNA polymerase sigma factor Rp 2e-05
pfam05327 554 pfam05327, RRN3, RNA polymerase I specific transcr 3e-05
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 3e-05
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 3e-05
pfam02724 583 pfam02724, CDC45, CDC45-like protein 4e-05
pfam02724 583 pfam02724, CDC45, CDC45-like protein 5e-05
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 7e-05
pfam05285 317 pfam05285, SDA1, SDA1 9e-05
pfam02724 583 pfam02724, CDC45, CDC45-like protein 1e-04
PTZ00248319 PTZ00248, PTZ00248, eukaryotic translation initiat 1e-04
pfam04931784 pfam04931, DNA_pol_phi, DNA polymerase phi 2e-04
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 2e-04
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 3e-04
pfam03344 715 pfam03344, Daxx, Daxx Family 3e-04
pfam05642 727 pfam05642, Sporozoite_P67, Sporozoite P67 surface 3e-04
pfam06524314 pfam06524, NOA36, NOA36 protein 3e-04
pfam00183 529 pfam00183, HSP90, Hsp90 protein 3e-04
pfam05285 317 pfam05285, SDA1, SDA1 4e-04
pfam04546211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 4e-04
pfam04546211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 4e-04
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 5e-04
pfam04546211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 5e-04
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 6e-04
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 6e-04
PTZ00482 844 PTZ00482, PTZ00482, membrane-attack complex/perfor 6e-04
PLN00151 852 PLN00151, PLN00151, potassium transporter; Provisi 7e-04
pfam11705221 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym 7e-04
PRK02363129 PRK02363, PRK02363, DNA-directed RNA polymerase su 8e-04
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 0.001
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 0.001
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 0.001
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 0.001
pfam04931784 pfam04931, DNA_pol_phi, DNA polymerase phi 0.001
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 0.001
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 0.001
PTZ00459 291 PTZ00459, PTZ00459, mucin-associated surface prote 0.001
pfam11702 509 pfam11702, DUF3295, Protein of unknown function (D 0.001
pfam09184285 pfam09184, PPP4R2, PPP4R2 0.001
pfam04889241 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont 0.001
pfam04147 809 pfam04147, Nop14, Nop14-like family 0.002
pfam02724 583 pfam02724, CDC45, CDC45-like protein 0.002
pfam04546 211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 0.002
pfam11705221 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym 0.002
COG5177 769 COG5177, COG5177, Uncharacterized conserved protei 0.002
COG5593821 COG5593, COG5593, Nucleic-acid-binding protein pos 0.002
pfam02724 583 pfam02724, CDC45, CDC45-like protein 0.003
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 0.003
pfam04546 211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 0.003
pfam03896 281 pfam03896, TRAP_alpha, Translocon-associated prote 0.003
pfam08595141 pfam08595, RXT2_N, RXT2-like, N-terminal 0.003
COG4547 620 COG4547, CobT, Cobalamin biosynthesis protein CobT 0.003
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 0.004
pfam05285 317 pfam05285, SDA1, SDA1 0.004
pfam08553 794 pfam08553, VID27, VID27 cytoplasmic protein 0.004
PLN03196487 PLN03196, PLN03196, MOC1-like protein; Provisional 0.004
>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP) Back     alignment and domain information 
 Score =  296 bits (759), Expect = e-100
 Identities = 136/247 (55%), Positives = 172/247 (69%), Gaps = 13/247 (5%)

Query: 39  RKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAM 98
           R+RVE L+ +Q E DELEAKF EE   LE KY KLYQP+Y KR EI+NG  E        
Sbjct: 1   RQRVEALKALQKELDELEAKFQEEVLELERKYDKLYQPLYDKRREIINGAREPTE----- 55

Query: 99  DQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GFKLE 157
              E++  EEKG+P FWLTA+KN+ +LSE ITERDE ALK+L DI+   ++DPK GFKL 
Sbjct: 56  --VEEEEPEEKGIPGFWLTALKNHPLLSEMITERDEEALKYLTDIRVEYLEDPKKGFKLI 113

Query: 158 FYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKK-PKKGSKN 216
           F+F PNPYF N VLTKTYH+ DE +P   K+ GT IEW  GK LT K +KKK   K +  
Sbjct: 114 FHFAPNPYFTNEVLTKTYHLKDEGDPFELKSEGTPIEWKEGKNLTVKTVKKKQRNKKTGQ 173

Query: 217 AKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAV 276
            + ITKT   ESFFNFF+PP+VP+DD+D DE+    L+ ++E DY+IG  I+D +IP A+
Sbjct: 174 TRTITKTVPAESFFNFFSPPKVPDDDDDDDEE----LEEELELDYEIGEIIKDDLIPRAL 229

Query: 277 SWFTGEA 283
            ++TGEA
Sbjct: 230 DYYTGEA 236

NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes. Length = 236
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3 Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3 Back     alignment and domain information
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated Back     alignment and domain information
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3 Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information
>gnl|CDD|218538 pfam05285, SDA1, SDA1 Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional Back     alignment and domain information
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family Back     alignment and domain information
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen Back     alignment and domain information
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein Back     alignment and domain information
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein Back     alignment and domain information
>gnl|CDD|218538 pfam05285, SDA1, SDA1 Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF) Superfamily; Provisional Back     alignment and domain information
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional Back     alignment and domain information
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31 Back     alignment and domain information
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|185638 PTZ00459, PTZ00459, mucin-associated surface protein (MASP); Provisional Back     alignment and domain information
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295) Back     alignment and domain information
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2 Back     alignment and domain information
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31 Back     alignment and domain information
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit Back     alignment and domain information
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal Back     alignment and domain information
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information
>gnl|CDD|218538 pfam05285, SDA1, SDA1 Back     alignment and domain information
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein Back     alignment and domain information
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 360
KOG1507358 consensus Nucleosome assembly protein NAP-1 [Chrom 100.0
PTZ00007337 (NAP-L) nucleosome assembly protein -L; Provisiona 100.0
PF00956244 NAP: Nucleosome assembly protein (NAP); InterPro: 100.0
PTZ00008185 (NAP-S) nucleosome assembly protein-S; Provisional 100.0
KOG1508260 consensus DNA replication factor/protein phosphata 99.95
PF1162949 Mst1_SARAH: C terminal SARAH domain of Mst1; Inter 95.1
PF04931 784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 93.13
PF03066149 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 89.59
KOG1189960 consensus Global transcriptional regulator, cell d 85.46
PF04147 840 Nop14: Nop14-like family ; InterPro: IPR007276 Emg 82.18
PF07352149 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; I 81.16
PHA0260880 67 prohead core protein; Provisional 80.58
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-86  Score=640.37  Aligned_cols=275  Identities=56%  Similarity=0.917  Sum_probs=249.4

Q ss_pred             CHHHHHHHHHHHhhhccCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 018148            9 TEESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV   88 (360)
Q Consensus         9 ~~~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~   88 (360)
                      ++.++++++.||.+|++++++++++||++||+||.||++||.++..|+++|+++++.||+||+++|+|||+||++||+|.
T Consensus        46 ~~~~~~~~~~r~~~l~~~~s~~v~~Lp~~Vk~Rv~aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~  125 (358)
T KOG1507|consen   46 TPKLLSALDGRLASLAGLLSDMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGE  125 (358)
T ss_pred             ChhhhcccchhhhcccCCCchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCC
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccccchhh------------hhhhhhccCCCccHHHHHhcChhhhhccchhhHHhhccccccEEEEeCCC-CceE
Q 018148           89 VEGAPNEVAMDQE------------EDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDP-KGFK  155 (360)
Q Consensus        89 ~e~~~~E~~~~~~------------~~~~~~~kgIP~FWl~vL~n~~~ls~~I~e~De~~LkyL~DI~ve~~ed~-~gFk  155 (360)
                      ++|+.+++++...            ......++|||+||||||+|+++|++||+++|++||+||+||++.+..++ .||+
T Consensus       126 ~EP~eee~e~~~~~~de~~~~e~~~~~~~~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fk  205 (358)
T KOG1507|consen  126 VEPTEEEIEWPEEIEDEGNLAEDTEEAEKEDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFK  205 (358)
T ss_pred             ccCcccccccccccccccccccchhhhccccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceE
Confidence            9998777654211            12234679999999999999999999999999999999999999999887 6999


Q ss_pred             EEEEeCCCCCcccceEEEEEeec---cCCCc------ceecceeeeeeecCCCCCchhhhhcCCC-CCCCCCcccccccc
Q 018148          156 LEFYFDPNPYFKNSVLTKTYHMI---DEDEP------ILEKAIGTEIEWYPGKCLTQKLLKKKPK-KGSKNAKPITKTEE  225 (360)
Q Consensus       156 L~F~F~~NpYF~N~vLtK~y~~~---~~~~p------~~~~~~gt~I~WK~GKnlT~k~~kKk~k-kg~k~~r~v~k~~~  225 (360)
                      |+|||+|||||+|+||||||+|+   +.++|      .+.+|+||.|+|++|||||+++++|||| ||++++|+|+|+++
T Consensus       206 lEFhFd~N~YFtN~vLTKTY~l~~~~D~~~P~~~~G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp  285 (358)
T KOG1507|consen  206 LEFHFDPNPYFTNEVLTKTYFLKSEPDEDDPFAFDGPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVP  285 (358)
T ss_pred             EEEEcCCCccccccceeeeeeeeccCCCcCCcccCCceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeeccc
Confidence            99999999999999999999998   55555      7889999999999999999999888875 67889999999999


Q ss_pred             cccccccccccCCCCCCCCCChhHHHHHHHhhhccccccccccccccccchhhhcccccccc
Q 018148          226 CESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEE  287 (360)
Q Consensus       226 ~~SFFnfF~~~~~p~d~~~~ded~~eel~~~l~~D~eIg~~ikd~IiP~Av~yftGea~~~d  287 (360)
                      ++||||||+||.+| +.++.|++..   +++|+.||+||++||++|||+||.||||+|++++
T Consensus       286 ~eSFFNFFsPP~ip-d~~d~Ded~~---~~~L~~DyeIG~~lr~~IIPrAV~~fTGea~e~~  343 (358)
T KOG1507|consen  286 NESFFNFFSPPEIP-DEEDLDEDDL---EELLELDYEIGETLRDKIIPRAVLWFTGEALEDE  343 (358)
T ss_pred             chhhhhccCCCCCC-cccccCchHH---HHHHHhhHHHHHHHHhhhhhheeeeecccccccc
Confidence            99999999999999 4444444332   7899999999999999999999999999995543

>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional Back     alignment and domain information
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus Back     alignment and domain information
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional Back     alignment and domain information
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair] Back     alignment and domain information
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins Back     alignment and domain information
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism] Back     alignment and domain information
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [] Back     alignment and domain information
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo [] Back     alignment and domain information
>PHA02608 67 prohead core protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
2ayu_A417 The Structure Of Nucleosome Assembly Protein Sugges 2e-32
2z2r_A292 Nucleosome Assembly Proteins I (Nap-1, 74-365) Leng 5e-32
3hfd_A276 Nucleosome Assembly Protein 1 From Plasmodium Knowl 1e-31
3fs3_A359 Crystal Structure Of Malaria Parasite Nucleosome As 6e-31
3gyv_A249 Crystal Structure Of Nucleosome Assembly Protein Fr 2e-30
2e50_A225 Crystal Structure Of SetTAF-1betaINHAT Length = 225 2e-18
>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A Mechanism For Histone Binding And Shuttling Length = 417 Back     alignment and structure 
Iteration: 1

 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 149/307 (48%), Gaps = 33/307 (10%)
Query: 6   DCLTEESFFV--VQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEER 63
           D L  +   +  +Q++L +L GQ S  +  L   V++++  L+ +QSE  E+E +F  E 
Sbjct: 58  DILANQPLLLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEM 117
Query: 64  AALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQ--------------EEDKATEE- 108
             LE K+ + Y+P++ +R  I++G  +  P ++A  Q              EE+KA  + 
Sbjct: 118 FELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDS 177
Query: 109 -----KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKW-FRIDDPKGFKLEFYFDP 162
                KG+P FWLTA++N  ++ + IT+RD   L++L+DI   +  D   GFKL F FD 
Sbjct: 178 EEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDS 237
Query: 163 --NPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYPGXXXXXX--XXXXXXXXXX 214
             NP+F N +L KTY    E     + I + A G EI W                     
Sbjct: 238 SANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTT 297
Query: 215 XXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPH 274
                I K    ESFFNFF+PP++               +  +  DY IG  ++DK+IP 
Sbjct: 298 KQVRTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLAL--DYSIGEQLKDKLIPR 355
Query: 275 AVSWFTG 281
           AV WFTG
Sbjct: 356 AVDWFTG 362
>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365) Length = 292 Back     alignment and structure
>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi Length = 276 Back     alignment and structure
>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly Protein (Nap) Length = 359 Back     alignment and structure
>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From Plasmodium Falciparum Length = 249 Back     alignment and structure
>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT Length = 225 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
2ayu_A417 Nucleosome assembly protein; histone chaperone; 3. 2e-70
2e50_A225 Protein SET; histone chaperone, inhat, PP2AI, prot 5e-58
3fs3_A359 Nucleosome assembly protein 1, putative; protein l 1e-57
2zd7_A264 VPS75, vacuolar protein sorting-associated protein 2e-47
3kyp_A193 Pfnaps, nucleosome assembly protein; histone recog 6e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417 Back     alignment and structure
 Score =  225 bits (573), Expect = 2e-70
 Identities = 118/373 (31%), Positives = 197/373 (52%), Gaps = 55/373 (14%)

Query: 16  VQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQ 75
           +Q++L +L GQ S  +  L   V++++  L+ +QSE  E+E +F  E   LE K+ + Y+
Sbjct: 70  IQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYK 129

Query: 76  PMYTKRYEIVNGVVEGAPNEV--------------------AMDQEEDKATEEKGVPDFW 115
           P++ +R  I++G  +  P ++                       Q + +  + KG+P FW
Sbjct: 130 PIWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFW 189

Query: 116 LTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GFKLEFYFD--PNPYFKNSVLT 172
           LTA++N  ++ + IT+RD   L++L+DI    + D + GFKL F FD   NP+F N +L 
Sbjct: 190 LTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILC 249

Query: 173 KTYHMIDE----DEPILEKAIGTEIEWYPGKCLT--QKLLKKKPKKGSKNAKPITKTEEC 226
           KTY    E     + I + A G EI W            ++K+  K +K  + I K    
Sbjct: 250 KTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPI 309

Query: 227 ESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQE 286
           ESFFNFF+PP++  +D+D + +  E+L+ ++  DY IG  ++DK+IP AV WFTG A++ 
Sbjct: 310 ESFFNFFDPPKIQNEDQDEELE--EDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEF 367

Query: 287 EEIELDDDEDDDDIDEDEDDEGDDDEDEDEDDEEDEEDDEGKTKKKSSAGSKKSGRQQAG 346
           E  E +++ D+D+ +E++DD G +D+D +  +E+D                         
Sbjct: 368 EFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQD------------------------D 403

Query: 347 DAQQGERPPECKQ 359
            A + E+ PECKQ
Sbjct: 404 FAGRPEQAPECKQ 416
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Length = 225 Back     alignment and structure
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359 Back     alignment and structure
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264 Back     alignment and structure
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Length = 193 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
2ayu_A417 Nucleosome assembly protein; histone chaperone; 3. 100.0
3fs3_A359 Nucleosome assembly protein 1, putative; protein l 100.0
2e50_A225 Protein SET; histone chaperone, inhat, PP2AI, prot 100.0
2zd7_A264 VPS75, vacuolar protein sorting-associated protein 100.0
3kyp_A193 Pfnaps, nucleosome assembly protein; histone recog 100.0
2jo8_A51 Serine/threonine-protein kinase 4; C-terminal doma 94.1
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 90.86
2ayu_A417 Nucleosome assembly protein; histone chaperone; 3. 85.8
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Back     alignment and structure
Probab=100.00  E-value=4.4e-87  Score=670.10  Aligned_cols=279  Identities=37%  Similarity=0.669  Sum_probs=235.9

Q ss_pred             CCHHHHHHHHHHHhhhccCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 018148            8 LTEESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNG   87 (360)
Q Consensus         8 ~~~~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G   87 (360)
                      .+|.++++|++||++|+|+++++|++||+.||+||.+|++||.++..|+++|++++++|++||+++|+|||++|++||+|
T Consensus        62 ~~p~~~~~~~~~l~~l~~~~~~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~G  141 (417)
T 2ayu_A           62 NQPLLLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISG  141 (417)
T ss_dssp             --------CCSTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hCHHHHHHHHHHHHHhhccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcccccchhh--------------------hhhhhhccCCCccHHHHHhcChhhhhccchhhHHhhccccccEEEE
Q 018148           88 VVEGAPNEVAMDQE--------------------EDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFR  147 (360)
Q Consensus        88 ~~e~~~~E~~~~~~--------------------~~~~~~~kgIP~FWl~vL~n~~~ls~~I~e~De~~LkyL~DI~ve~  147 (360)
                      .++|+.+|+.+...                    ......++|||+||++||+||+.|+.||+++|++||+||+||+|++
T Consensus       142 ~~ept~eE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve~  221 (417)
T 2ayu_A          142 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEY  221 (417)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCB
T ss_pred             CCCCchhhhcccccccchhhhhhhhhhhhhhcccccccccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEEE
Confidence            99999665432110                    1112345899999999999999999999999999999999999999


Q ss_pred             eCC-CCceEEEEEe--CCCCCcccceEEEEEeeccC----CCcceecceeeeeeecC-CCCCchhhhhcCCC-CCCCCCc
Q 018148          148 IDD-PKGFKLEFYF--DPNPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYP-GKCLTQKLLKKKPK-KGSKNAK  218 (360)
Q Consensus       148 ~ed-~~gFkL~F~F--~~NpYF~N~vLtK~y~~~~~----~~p~~~~~~gt~I~WK~-GKnlT~k~~kKk~k-kg~k~~r  218 (360)
                      +.+ +.||+|+|+|  .+||||+|++|||+|+|...    |.+++.+++||+|+||+ |||||+++++||+| |+++++|
T Consensus       222 ~~d~~~gF~L~F~F~~~~NpYF~N~vLtKtY~~~~e~~~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~R  301 (417)
T 2ayu_A          222 LTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVR  301 (417)
T ss_dssp             CCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------
T ss_pred             ccCCCcceEEEEEeCCCCCccccCCeEEEEEEEeccCCCCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCccc
Confidence            875 5699999999  99999999999999999754    34455679999999999 99999999998876 6678899


Q ss_pred             ccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccccccccccccccchhhhccccccccc
Q 018148          219 PITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEE  288 (360)
Q Consensus       219 ~v~k~~~~~SFFnfF~~~~~p~d~~~~ded~~eel~~~l~~D~eIg~~ikd~IiP~Av~yftGea~~~dd  288 (360)
                      +|++++++.||||||+||.+|++++  +++..++++++|+.||+||++||++|||+||.||||+|++.++
T Consensus       302 ~v~k~v~~~SFFnfFspp~~p~~de--de~~~ee~e~~l~~DfeIG~~Ikd~IiP~AV~yftGea~~~e~  369 (417)
T 2ayu_A          302 TIEKITPIESFFNFFDPPKIQNEDQ--DEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFEF  369 (417)
T ss_dssp             CCEEEEECCCGGGGGSCSCSCCCTT--SSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHHHHHH
T ss_pred             ccccCCCCCCceeecCCCCCCCccc--cccchHHHHHHHHHHHHHHHHHHhhccccHHHHhccccccccc
Confidence            9999999999999999999998764  2233456889999999999999999999999999999999865
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Back     alignment and structure
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Back     alignment and structure
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Back     alignment and structure
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Back     alignment and structure
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 360
d2ayua1301 d.305.1.1 (A:70-370) Nucleosome assembly protein, 2e-83
d2e50a1222 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapie 2e-60
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  253 bits (648), Expect = 2e-83
 Identities = 96/301 (31%), Positives = 159/301 (52%), Gaps = 31/301 (10%)

Query: 16  VQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQ 75
           +Q++L +L GQ S  +  L   V++++  L+ +QSE  E+E +F  E   LE K+ + Y+
Sbjct: 1   IQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYK 60

Query: 76  PMYTKRYEIVNGVVEGAPNEVA--------------------MDQEEDKATEEKGVPDFW 115
           P++ +R  I++G  +  P ++A                      Q + +  + KG+P FW
Sbjct: 61  PIWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFW 120

Query: 116 LTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKG---FKLEFYFDPNPYFKNSVLT 172
           LTA++N  ++ + IT+RD   L++L+DI    + D +        F    NP+F N +L 
Sbjct: 121 LTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILC 180

Query: 173 KTYHMIDE----DEPILEKAIGTEIEWYPGK--CLTQKLLKKKPKKGSKNAKPITKTEEC 226
           KTY    E     + I + A G EI W            ++K+  K +K  + I K    
Sbjct: 181 KTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPI 240

Query: 227 ESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQE 286
           ESFFNFF+PP++  +D+  DE+  E+L+ ++  DY IG  ++DK+IP AV WFTG A++ 
Sbjct: 241 ESFFNFFDPPKIQNEDQ--DEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEF 298

Query: 287 E 287
           E
Sbjct: 299 E 299
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Length = 222 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
d2ayua1301 Nucleosome assembly protein, NAP {Baker's yeast (S 100.0
d2e50a1222 Protein SET {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-74  Score=558.42  Aligned_cols=270  Identities=38%  Similarity=0.708  Sum_probs=232.4

Q ss_pred             HHHHHhhhccCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCccc
Q 018148           16 VQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNE   95 (360)
Q Consensus        16 l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~~e~~~~E   95 (360)
                      ||+||.+|+|++++||++||+.||+||.||++||.++.+|+++|++++++||++|+++|+|||++|++||+|.++|+.+|
T Consensus         1 ~~~~l~~l~~~~~~~i~~Lp~~v~~rv~aLk~lq~e~~~le~~f~~e~~~LE~ky~~~~~ply~kR~~II~G~~ept~eE   80 (301)
T d2ayua1           1 IQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQ   80 (301)
T ss_dssp             CCSTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHH
T ss_pred             CcchhhhhhcCCcchHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHCCCCCCCHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999766


Q ss_pred             ccchh--------------------hhhhhhhccCCCccHHHHHhcChhhhhccchhhHHhhccccccEEEEeCCCC-ce
Q 018148           96 VAMDQ--------------------EEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GF  154 (360)
Q Consensus        96 ~~~~~--------------------~~~~~~~~kgIP~FWl~vL~n~~~ls~~I~e~De~~LkyL~DI~ve~~ed~~-gF  154 (360)
                      +.+..                    .......++|||+||++||+||+.|+.+|+++|++||+||+||+|++..++. ||
T Consensus        81 ~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~kgIP~FWl~vl~n~~~l~~~I~e~D~~~L~~L~dI~ve~~~d~~~gf  160 (301)
T d2ayua1          81 IAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGF  160 (301)
T ss_dssp             HHHHHHHHHHTTCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEE
T ss_pred             hhcccccccccchhhhhhhhhhhhccccccccccCCchHHHHHHHcCHHHhhhCCHHHHHHHHhhceeEEEEccCCCCCc
Confidence            43210                    0223345689999999999999999999999999999999999999887765 99


Q ss_pred             EEEEEe--CCCCCcccceEEEEEeeccC----CCcceecceeeeeeecC-CCCCchhhhhcCCC-CCCCCCccccccccc
Q 018148          155 KLEFYF--DPNPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYP-GKCLTQKLLKKKPK-KGSKNAKPITKTEEC  226 (360)
Q Consensus       155 kL~F~F--~~NpYF~N~vLtK~y~~~~~----~~p~~~~~~gt~I~WK~-GKnlT~k~~kKk~k-kg~k~~r~v~k~~~~  226 (360)
                      +|+|+|  .|||||+|++|||+|+|...    +.+++.+++||+|+||+ |+|+|+++++||+| |+++.+|++++++++
T Consensus       161 ~l~F~F~f~~N~yF~N~vLtK~y~~~~~~~~~~~~~~~~~eg~~I~WK~~~k~~t~~~~~kk~~~k~~~~~r~~~k~~~~  240 (301)
T d2ayua1         161 KLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPI  240 (301)
T ss_dssp             EEEEEECTTTCSSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEEC
T ss_pred             eEEEEEecCCCCCCCCCeEEEEEEEecCCCCCCCccccccCccccccccCCCcchhhhhhhcccCCCCCCCcccccCCCC
Confidence            999999  68999999999999999754    23445689999999999 68999998877765 567788999999999


Q ss_pred             ccccccccccCCCCCCCCCChhHHHHHHHhhhccccccccccccccccchhhhcccccccc
Q 018148          227 ESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEE  287 (360)
Q Consensus       227 ~SFFnfF~~~~~p~d~~~~ded~~eel~~~l~~D~eIg~~ikd~IiP~Av~yftGea~~~d  287 (360)
                      .||||||+|+.+|.++.  +++..+++++.|..||+||.+|+++|||+||.||||+|++.+
T Consensus       241 ~SFF~fF~~~~~~~~~~--~~~~~e~~~~~l~~D~eig~~i~d~iiP~Av~yytGea~~~~  299 (301)
T d2ayua1         241 ESFFNFFDPPKIQNEDQ--DEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFE  299 (301)
T ss_dssp             CCGGGGGSCSCSCCCTT--SSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHHHHH
T ss_pred             CCCCcCCCCCCCCCccc--cchhhHHHHHHHhhhHHHHHHHHhcccccHHHhhCchhhhcc
Confidence            99999999999987654  334456788999999999999999999999999999999875
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure