Citrus Sinensis ID: 018166

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDETSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC
cEEEEEccccccHHHHHHHHHcccccccEEEcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEcccccccccccccEEEEEEEEccccccEEEEEEEEcccccHHHHcHHHccccccccccHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccccccccccEEEcccccccccccEEEEEcccccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHccccccEEc
cEEEEEccccccEEEEEEEcccEEEEEEEEccccccccccHHHHHHEEEEEEEEccccccEEcccccccccccccccEEEEEcccccccccccccccEEEEEEccccccccHHEEEEEcccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccEccccccccccccccccccccccEEcccccccccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHcHEEEHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHcHcHcEEEEEc
mliiilpdvsgsygriKRVCETELgivsqccqprqasrLNMQYFENVALKINVKVGGRNTVLVDAVqkriplvtdrptiifgadvthpqpgedsspsIAAVVASmdwpevtkyRGLVSAQAHHEEIIQDLYkstqdpqrglvhGGMIRELLIAFRRstnfkphriifyrdgvsegqFSQVLLHEMNAIRQACAsleegyappvTFVVVQKrhhtrlfpadhnrrdltdrsgnilpgtvfdthichptefdfylnshagiqgtsrpthyhvlydenrfsaddfQVLTNNLCytyarctrsvsivppaYYAHLAAFRARYyiedetsaggstggsrstadrnlairplpvikdnvkdvmfyc
mliiilpdvsgsygRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVdavqkriplvtdrptIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTrlfpadhnrrdltdrsgNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDEtsaggstggsrstadrnlairplpvikdnvkdVMFYC
MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIedetsaggstggsrstadrNLAIRPLPVIKDNVKDVMFYC
*LIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVT***********IAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIE***************************************
MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAD***********NILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARY*****************************VIKDNVKDVMFYC
MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDE************TADRNLAIRPLPVIKDNVKDVMFYC
MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQ*GEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAD*********SGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIED********************IRPLPVIKDNVKDVMFYC
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MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDETSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query360 2.2.26 [Sep-21-2011]
Q9SJK3997 Protein argonaute 5 OS=Ar yes no 1.0 0.361 0.786 1e-170
Q851R21058 Protein argonaute MEL1 OS yes no 0.997 0.339 0.766 1e-163
O043791048 Protein argonaute 1 OS=Ar no no 1.0 0.343 0.734 1e-162
Q7XSA21118 Protein argonaute 1B OS=O no no 1.0 0.322 0.721 1e-159
Q6EU141082 Protein argonaute 1A OS=O no no 1.0 0.332 0.721 1e-158
Q6K9721011 Protein argonaute 1C OS=O no no 0.994 0.354 0.726 1e-156
Q7Y0011049 Protein argonaute 12 OS=O no no 0.988 0.339 0.713 1e-156
Q9XGW1988 Protein argonaute 10 OS=A no no 1.0 0.364 0.706 1e-154
Q69VD5979 Protein argonaute PNH1 OS no no 0.986 0.362 0.719 1e-154
Q5Z5B21038 Protein argonaute 1D OS=O no no 1.0 0.346 0.708 1e-152
>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 Back     alignment and function desciption
 Score =  596 bits (1536), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 283/360 (78%), Positives = 308/360 (85%)

Query: 1   MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNT 60
           +LI+ILPDV+GSYG+IKR+CETELGIVSQCCQPRQ ++LN QY ENVALKINVK GGRNT
Sbjct: 638 LLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNT 697

Query: 61  VLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQ 120
           VL DA+++ IPL+TDRPTII GADVTHPQPGEDSSPSIAAVVASMDWPE+ KYRGLVSAQ
Sbjct: 698 VLNDAIRRNIPLITDRPTIIMGADVTHPQPGEDSSPSIAAVVASMDWPEINKYRGLVSAQ 757

Query: 121 AHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQV 180
           AH EEIIQDLYK  QDPQRGLVH G+IRE  IAFRR+T   P RIIFYRDGVSEGQFSQV
Sbjct: 758 AHREEIIQDLYKLVQDPQRGLVHSGLIREHFIAFRRATGQIPQRIIFYRDGVSEGQFSQV 817

Query: 181 LLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFD 240
           LLHEM AIR+AC SL+E Y P VTFV+VQKRHHTRLFP  H  RD+TD+SGNI PGTV D
Sbjct: 818 LLHEMTAIRKACNSLQENYVPRVTFVIVQKRHHTRLFPEQHGNRDMTDKSGNIQPGTVVD 877

Query: 241 THICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSV 300
           T ICHP EFDFYLNSHAGIQGTSRP HYHVL DEN F+AD  Q+LTNNLCYTYARCT+SV
Sbjct: 878 TKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSV 937

Query: 301 SIVPPAYYAHLAAFRARYYIEDETSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC 360
           SIVPPAYYAHLAAFRARYY+E E S GGS+    ST      I  LP IKDNVK+VMFYC
Sbjct: 938 SIVPPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTGVGQVISQLPAIKDNVKEVMFYC 997
Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates with siRNAs of various sizes, from 21-24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal cytosine. Probably involved in antiviral RNA silencing. Associates with siRNAs derived from cucumber mosaic virus (CMV). Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO5 function in RNA silencing.
Arabidopsis thaliana (taxid: 3702)
>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 Back     alignment and function description
>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 Back     alignment and function description
>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 Back     alignment and function description
>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 Back     alignment and function description
>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 Back     alignment and function description
>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
297734872 1032 unnamed protein product [Vitis vinifera] 1.0 0.348 0.85 0.0
359479401 1038 PREDICTED: LOW QUALITY PROTEIN: protein 1.0 0.346 0.85 0.0
224054242 904 argonaute protein group [Populus trichoc 0.988 0.393 0.841 0.0
224106886 987 argonaute protein group [Populus trichoc 0.980 0.357 0.833 1e-178
255565533 987 eukaryotic translation initiation factor 0.988 0.360 0.844 1e-177
297826159 1001 hypothetical protein ARALYDRAFT_481718 [ 1.0 0.359 0.794 1e-172
449520607 984 PREDICTED: LOW QUALITY PROTEIN: protein 0.972 0.355 0.812 1e-170
449443600 987 PREDICTED: protein argonaute 5-like [Cuc 0.972 0.354 0.797 1e-169
30683679 997 Argonaute family protein [Arabidopsis th 1.0 0.361 0.786 1e-168
4510428 997 Argonaute (AGO1)-like protein [Arabidops 1.0 0.361 0.786 1e-168
>gi|297734872|emb|CBI17106.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/360 (85%), Positives = 331/360 (91%)

Query: 1    MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNT 60
            +LIIILPDV+GSYG+IKR+CETELGIVSQCCQP QAS+LN QYFENVALKINVKVGGRNT
Sbjct: 673  LLIIILPDVTGSYGKIKRICETELGIVSQCCQPSQASKLNKQYFENVALKINVKVGGRNT 732

Query: 61   VLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQ 120
            VL DA+Q++IPLV+D PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQ
Sbjct: 733  VLFDAIQRKIPLVSDLPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQ 792

Query: 121  AHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQV 180
             H EEIIQDLYK+T DP +G+ HGGMIRELLIAFRRST +KP RIIFYRDGVSEGQFSQV
Sbjct: 793  HHREEIIQDLYKTTADPHKGVTHGGMIRELLIAFRRSTGYKPSRIIFYRDGVSEGQFSQV 852

Query: 181  LLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFD 240
            LLHEM++IR+ACASLEEGY PPVTFVVVQKRHHTR FP+DH  RDLTDRSGNILPGTV D
Sbjct: 853  LLHEMDSIRKACASLEEGYLPPVTFVVVQKRHHTRFFPSDHRSRDLTDRSGNILPGTVVD 912

Query: 241  THICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSV 300
            T ICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDEN+F+AD  Q+LTNNLCYTYARCTRSV
Sbjct: 913  TKICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADILQILTNNLCYTYARCTRSV 972

Query: 301  SIVPPAYYAHLAAFRARYYIEDETSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC 360
            SIVPPAYYAHLAAFRARYYIE +TS  GS  G RST +RNL +R LP +K+NVKDVMFYC
Sbjct: 973  SIVPPAYYAHLAAFRARYYIEGDTSDSGSGSGDRSTRERNLEVRLLPAVKENVKDVMFYC 1032

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479401|ref|XP_002271699.2| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224054242|ref|XP_002298162.1| argonaute protein group [Populus trichocarpa] gi|222845420|gb|EEE82967.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224106886|ref|XP_002314317.1| argonaute protein group [Populus trichocarpa] gi|222850725|gb|EEE88272.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255565533|ref|XP_002523757.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223537061|gb|EEF38697.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297826159|ref|XP_002880962.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] gi|297326801|gb|EFH57221.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449520607|ref|XP_004167325.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449443600|ref|XP_004139565.1| PREDICTED: protein argonaute 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30683679|ref|NP_850110.1| Argonaute family protein [Arabidopsis thaliana] gi|322510009|sp|Q9SJK3.2|AGO5_ARATH RecName: Full=Protein argonaute 5 gi|330252961|gb|AEC08055.1| Argonaute family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4510428|gb|AAD21514.1| Argonaute (AGO1)-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
TAIR|locus:2057851997 AGO5 "ARGONAUTE 5" [Arabidopsi 1.0 0.361 0.763 3.7e-151
UNIPROTKB|Q851R21058 MEL1 "Protein argonaute MEL1" 0.997 0.339 0.739 2e-143
UNIPROTKB|Q69VD5979 PHN1 "Protein argonaute PNH1" 0.997 0.366 0.695 1.5e-136
TAIR|locus:2170897988 AGO10 "ARGONAUTE 10" [Arabidop 1.0 0.364 0.695 2e-136
UNIPROTKB|Q75HC21048 AGO7 "Protein argonaute 7" [Or 0.938 0.322 0.491 1.7e-84
UNIPROTKB|F1PGN2794 EIF2C4 "Uncharacterized protei 0.863 0.391 0.540 1e-82
UNIPROTKB|Q9HCK5861 EIF2C4 "Protein argonaute-4" [ 0.863 0.361 0.540 1e-82
UNIPROTKB|F1SV64861 EIF2C4 "Uncharacterized protei 0.863 0.361 0.540 1e-82
RGD|1304583798 Ago4 "argonaute RISC catalytic 0.863 0.389 0.540 2.8e-82
UNIPROTKB|F1LUQ5860 Eif2c4 "Protein Eif2c4" [Rattu 0.863 0.361 0.540 2.8e-82
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1475 (524.3 bits), Expect = 3.7e-151, P = 3.7e-151
 Identities = 275/360 (76%), Positives = 299/360 (83%)

Query:     1 MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNT 60
             +LI+ILPDV+GSYG+IKR+CETELGIVSQCCQPRQ ++LN QY ENVALKINVK GGRNT
Sbjct:   638 LLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNT 697

Query:    61 VLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQ 120
             VL DA+++ IPL+TDRPTII GADVTHPQPGEDSSPSIAAVVASMDWPE+ KYRGLVSAQ
Sbjct:   698 VLNDAIRRNIPLITDRPTIIMGADVTHPQPGEDSSPSIAAVVASMDWPEINKYRGLVSAQ 757

Query:   121 AHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQV 180
             AH EEIIQDLYK  QDPQRGLVH G+IRE  IAFRR+T   P RIIFYRDGVSEGQFSQV
Sbjct:   758 AHREEIIQDLYKLVQDPQRGLVHSGLIREHFIAFRRATGQIPQRIIFYRDGVSEGQFSQV 817

Query:   181 LLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFD 240
             LLHEM AIR+AC SL+E Y P VTFV+VQKRHHTRLFP  H  RD+TD+SGNI PGTV D
Sbjct:   818 LLHEMTAIRKACNSLQENYVPRVTFVIVQKRHHTRLFPEQHGNRDMTDKSGNIQPGTVVD 877

Query:   241 THICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSV 300
             T ICHP EFDFYLNSHAGIQGTSRP HYHVL DEN F+AD  Q+LTNNLCYTYARCT+SV
Sbjct:   878 TKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSV 937

Query:   301 SIVPPAYYAHLAAFRARYYIXXXXXXXXXXXXXXXXXXXNLAIRPLPVIKDNVKDVMFYC 360
             SIVPPAYYAHLAAFRARYY+                      I  LP IKDNVK+VMFYC
Sbjct:   938 SIVPPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTGVGQVISQLPAIKDNVKEVMFYC 997
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0048441 "petal development" evidence=RCA
GO:0048443 "stamen development" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q75HC2 AGO7 "Protein argonaute 7" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGN2 EIF2C4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HCK5 EIF2C4 "Protein argonaute-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SV64 EIF2C4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1304583 Ago4 "argonaute RISC catalytic component 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LUQ5 Eif2c4 "Protein Eif2c4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q851R2MEL1_ORYSJNo assigned EC number0.76640.99720.3393yesno
Q9SJK3AGO5_ARATHNo assigned EC number0.78611.00.3610yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00022116001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (873 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 0.0
pfam02171296 pfam02171, Piwi, Piwi domain 1e-118
smart00950301 smart00950, Piwi, This domain is found in the prot 1e-114
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 1e-113
cd02826393 cd02826, Piwi-like, Piwi-like: PIWI domain 6e-70
cd04658448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 2e-66
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information 
 Score =  510 bits (1315), Expect = 0.0
 Identities = 187/323 (57%), Positives = 228/323 (70%), Gaps = 22/323 (6%)

Query: 1   MLIIILPD-VSGSYGRIKRVCETELGIVSQCCQPRQASR-LNMQYFENVALKINVKVGGR 58
           ++++ILP   S  YGRIKR+ +TELGI +QC   ++ ++  N QYF NVALKIN+K+GG 
Sbjct: 123 LVLVILPKKDSDIYGRIKRLADTELGIHTQCVLAKKVTKKGNPQYFANVALKINLKLGGI 182

Query: 59  NTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGE-DSSPSIAAVVASMDWPEVTKYRGLV 117
           N  L        PL+T  PT++ GADVTHP PG+   +PSIAAVVAS+DW    +Y   V
Sbjct: 183 NHSLEP---DIRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVASVDWHL-AQYPASV 238

Query: 118 SAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQF 177
             Q+H +EII DL               M+RELL AF+++T   P RII+YRDGVSEGQF
Sbjct: 239 RLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYYRDGVSEGQF 285

Query: 178 SQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGT 237
           +QVL  E+ AIR+ACA L  GY P +TF+VVQKRHHTR FP D +  D   ++GN+ PGT
Sbjct: 286 AQVLNEELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDAD--GKNGNVPPGT 343

Query: 238 VFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCT 297
           V D  I HP EFDFYL SHAGIQGT+RPTHYHVL+DE  F+AD+ Q LT NLCYTYARCT
Sbjct: 344 VVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWDEIGFTADELQTLTYNLCYTYARCT 403

Query: 298 RSVSIVPPAYYAHLAAFRARYYI 320
           RSVSI PPAYYAHLAA RAR Y+
Sbjct: 404 RSVSIPPPAYYAHLAAARARCYL 426

Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 426
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 360
PLN03202900 protein argonaute; Provisional 100.0
cd04657426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
KOG1041876 consensus Translation initiation factor 2C (eIF-2C 100.0
cd04658448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
PF02171302 Piwi: Piwi domain; InterPro: IPR003165 This domain 100.0
cd02826393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
KOG1042845 consensus Germ-line stem cell division protein Hiw 100.0
cd04659404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 100.0
COG1431685 Argonaute homolog, implicated in RNA metabolism [T 99.57
PF13032138 DUF3893: Domain of unknown function (DUF3893) 95.81
cd06559208 Endonuclease_V Endonuclease_V, a DNA repair enzyme 95.24
PRK11617224 endonuclease V; Provisional 95.19
COG1515212 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [ 91.82
PF08459155 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; I 89.23
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-88  Score=725.40  Aligned_cols=345  Identities=46%  Similarity=0.786  Sum_probs=301.2

Q ss_pred             CEEEEEcCC-CCc-hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhhcCCceeeecccccccCCccCCCCe
Q 018166            1 MLIIILPDV-SGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPT   78 (360)
Q Consensus         1 lvl~ilp~~-~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaKlGG~n~~l~~~~~~~~p~~~~~~t   78 (360)
                      |||||+|++ +.+ |+.||++|+.++||+||||....   .++|++.||++|||+||||+||.++...+..+|++.+.+|
T Consensus       553 lv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~---~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~t  629 (900)
T PLN03202        553 FLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPTR---VNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPT  629 (900)
T ss_pred             EEEEEEcCCCCcchHHHHHHHHhhccCcccEEeCccc---cchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCe
Confidence            689999975 556 99999999999999999996543   4689999999999999999999887654455788777899


Q ss_pred             EEEEEeecCCCCCCCCCCcEEEEEEeeCCCCcccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHHhc
Q 018166           79 IIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRST  158 (360)
Q Consensus        79 miiGidvsh~~~~~~~~~si~avvaS~d~~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~~  158 (360)
                      ||||+||+|++++....||++|+|||+||+.+++|++.++.|..++|++++++....+    ..+++|++++|..|++.+
T Consensus       630 MivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~  705 (900)
T PLN03202        630 IILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRELLLDFYTSS  705 (900)
T ss_pred             EEEEEEeecCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHHHHHHHHHc
Confidence            9999999999887645799999999999878999999999999999999886432111    125889999999999865


Q ss_pred             -CCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCCee
Q 018166          159 -NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGT  237 (360)
Q Consensus       159 -~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~~~~~~N~~~Gt  237 (360)
                       +++|++|||||||||||||.+|+++|+++|++||++++++|+|+||||+|+||||+|||+..        ..+||+|||
T Consensus       706 ~~~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGT  777 (900)
T PLN03202        706 GKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGT  777 (900)
T ss_pred             CCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCce
Confidence             69999999999999999999999999999999999998889999999999999999999853        358999999


Q ss_pred             eeccccccCCcccEEEeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHHhh
Q 018166          238 VFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRAR  317 (360)
Q Consensus       238 vVd~~i~~~~~~dF~L~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r~~  317 (360)
                      |||++||+|..+||||+||.++|||+||+||+||+||+++++|+||+|||+|||+|+||+++||+|+|+||||++|+|||
T Consensus       778 vVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r  857 (900)
T PLN03202        778 VVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMG  857 (900)
T ss_pred             EeccccccCCcceEEEecccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccCCCCCCCCCCCCccccccCCCCccccccCCCCceeC
Q 018166          318 YYIEDETSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC  360 (360)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~  360 (360)
                      +|+..+.++++++++++++.....+..+++.||++++++||||
T Consensus       858 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~Mfy~  900 (900)
T PLN03202        858 QFMKFEDMSETSSSHGGITSAGAVPVPELPRLHENVASSMFFC  900 (900)
T ss_pred             hhccccCCccccccccccCCCCccccccccccchhhcCCeeeC
Confidence            9998654333332222222222333457788999999999998

>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13032 DUF3893: Domain of unknown function (DUF3893) Back     alignment and domain information
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases Back     alignment and domain information
>PRK11617 endonuclease V; Provisional Back     alignment and domain information
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair] Back     alignment and domain information
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
4ei1_A859 Crystal Structure Of Human Argonaute2 Length = 859 2e-98
4f3t_A861 Human Argonaute-2 - Mir-20a Complex Length = 861 3e-98
2yhb_A437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 2e-44
4f1n_A1046 Crystal Structure Of Kluyveromyces Polysporus Argon 4e-44
2yha_A388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 5e-26
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 7e-26
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 5e-19
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 1e-18
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 3e-18
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 6e-18
3luc_A138 Crystal Structure Of Mid Domain From Hago2 Length = 7e-08
3luk_A138 Crystal Structure Of Mid Domain From Hago2 Length = 1e-07
4g0m_A150 Crystal Structure Of Arabidopsis Thaliana Ago2 Mid 1e-05
2xdy_A145 Crystal Structure Of The N. Crassa Qde-2 Ago Mid Do 7e-04
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure 
Iteration: 1

 Score =  355 bits (911), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 184/320 (57%), Positives = 219/320 (68%), Gaps = 19/320 (5%)
Query: 1   MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNT 60
           ++++ILP  +  Y  +KRV +T LG+ +QC Q +   R   Q   N+ LKINVK+GG N 
Sbjct: 517 LVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNN 576
Query: 61  VLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQ 120
           +L+   Q R P V  +P I  GADVTHP  G+   PSIAAVV SMD     +Y   V  Q
Sbjct: 577 ILLP--QGRPP-VFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQ 632
Query: 121 AHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQV 180
            H +EIIQDL               M+RELLI F +ST FKP RIIFYRDGVSEGQF QV
Sbjct: 633 QHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQV 679
Query: 181 LLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFD 240
           L HE+ AIR+AC  LE+ Y P +TF+VVQKRHHTRLF  D N R    +SGNI  GT  D
Sbjct: 680 LHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNER--VGKSGNIPAGTTVD 737
Query: 241 THICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSV 300
           T I HPTEFDFYL SHAGIQGTSRP+HYHVL+D+NRFS+D+ Q+LT  LC+TY RCTRSV
Sbjct: 738 TKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSV 797
Query: 301 SIVPPAYYAHLAAFRARYYI 320
           SI  PAYYAHL AFRARY++
Sbjct: 798 SIPAPAYYAHLVAFRARYHL 817
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 Back     alignment and structure
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 1e-139
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 1e-128
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 1e-124
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 3e-95
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 7e-77
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 1e-70
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 1e-59
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 1e-58
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 1e-23
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 2e-21
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 3e-21
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 2e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  414 bits (1066), Expect = e-139
 Identities = 189/361 (52%), Positives = 234/361 (64%), Gaps = 21/361 (5%)

Query: 1   MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNT 60
           ++++ILP  +  Y  +KRV +T LG+ +QC Q +   R   Q   N+ LKINVK+GG N 
Sbjct: 519 LVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNN 578

Query: 61  VLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQ 120
           +L+    +  P V  +P I  GADVTHP  G+   PSIAAVV SMD     +Y   V  Q
Sbjct: 579 ILLP---QGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQ 634

Query: 121 AHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQV 180
            H +EIIQDL               M+RELLI F +ST FKP RIIFYRDGVSEGQF QV
Sbjct: 635 QHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQV 681

Query: 181 LLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFD 240
           L HE+ AIR+AC  LE+ Y P +TF+VVQKRHHTRLF  D N  +   +SGNI  GT  D
Sbjct: 682 LHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKN--ERVGKSGNIPAGTTVD 739

Query: 241 THICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSV 300
           T I HPTEFDFYL SHAGIQGTSRP+HYHVL+D+NRFS+D+ Q+LT  LC+TY RCTRSV
Sbjct: 740 TKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSV 799

Query: 301 SIVPPAYYAHLAAFRARYYIEDE--TSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMF 358
           SI  PAYYAHL AFRARY++ D+   SA GS    +S    + A+     +  +    M+
Sbjct: 800 SIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMY 859

Query: 359 Y 359
           +
Sbjct: 860 F 860
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 100.0
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 100.0
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 100.0
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 100.0
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 100.0
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 100.0
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 100.0
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 100.0
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 99.62
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 99.62
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 99.61
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 99.56
3goc_A237 Endonuclease V; alpha-beta protein, structural gen 90.54
2w36_A225 Endonuclease V; hypoxanthine, endonuclease, endonu 88.35
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Back     alignment and structure
Probab=100.00  E-value=6.4e-94  Score=713.01  Aligned_cols=338  Identities=34%  Similarity=0.599  Sum_probs=240.4

Q ss_pred             CEEEEEcCCCCc-hHHHHHHhhhhcCceeeeeeccccccchhh--HHHHHHHHHHhhcCCceeeecccccccCCccCCCC
Q 018166            1 MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQ--YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRP   77 (360)
Q Consensus         1 lvl~ilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~--~~~ni~lkinaKlGG~n~~l~~~~~~~~p~~~~~~   77 (360)
                      |||||+|+++.+ |..||++|+.+.||+||||..+++.+.+++  +++||++|||+||||.||.|++.    +|++.+.+
T Consensus        81 lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~~~~~~~~  156 (437)
T 2yhb_A           81 FVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IPLLAKGK  156 (437)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----CHHHHTTC
T ss_pred             EEEEEECCCChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceecccc----ccccCCCC
Confidence            589999998877 999999999999999999999999887778  99999999999999999999763    45555679


Q ss_pred             eEEEEEeecCCC---CC--CCCCCcEEEEEEeeCCCCcccceeEEEEcc-CchhhhhhhhhccCCCCCccchhHHHHHHH
Q 018166           78 TIIFGADVTHPQ---PG--EDSSPSIAAVVASMDWPEVTKYRGLVSAQA-HHEEIIQDLYKSTQDPQRGLVHGGMIRELL  151 (360)
Q Consensus        78 tmiiGidvsh~~---~~--~~~~~si~avvaS~d~~~~~~y~~~~~~q~-~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L  151 (360)
                      |||||+||+|++   ++  ....||++|+|||+| +++++|.+.++.|. .++|++++|             ++|++++|
T Consensus       157 tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~~~~~~L  222 (437)
T 2yhb_A          157 TMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TDKFKTRL  222 (437)
T ss_dssp             EEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HHHHHHHH
T ss_pred             EEEEEEEEeccccccCCCcCCCCCEEEEEEEecC-CCcCeeeeEEEEcCCcchhHHHHH-------------HHHHHHHH
Confidence            999999999998   66  346799999999999 99999999999999 999999998             99999999


Q ss_pred             HHHHH---hcCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCC-CCCEEEEEEeecccccccccCCCCCCCC
Q 018166          152 IAFRR---STNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGY-APPVTFVVVQKRHHTRLFPADHNRRDLT  227 (360)
Q Consensus       152 ~~f~~---~~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~-~p~it~Ivv~K~~~~Rff~~~~~~~~~~  227 (360)
                      +.|++   .++.+|++|||||||||||||.+|+++|+++|++||.++..++ +|+||||+|+||||+|||+.+.++.  .
T Consensus       223 ~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~~--~  300 (437)
T 2yhb_A          223 ELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHI--H  300 (437)
T ss_dssp             HHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC------------------
T ss_pred             HHHHhhhhhcCCCCceEEEEeCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCCCEEEEEEEecccceeccCCcccc--c
Confidence            99998   7899999999999999999999999999999999999998777 8999999999999999999765421  1


Q ss_pred             CCCCCCCCeeeeccccccCCcccEEEeecCCccccccceeEEEEecCC------CCCHHHHHHHHHHhHhhcCcCCCCcc
Q 018166          228 DRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDEN------RFSADDFQVLTNNLCYTYARCTRSVS  301 (360)
Q Consensus       228 ~~~~N~~~GtvVd~~i~~~~~~dF~L~s~~~~~GTarP~~Y~vl~d~~------~~~~d~lq~lt~~Lc~~~~~~~~~i~  301 (360)
                      .+.+||+||||||++||+|..+||||+||.++|||+||+||+||+||+      ++++|+||+|||+|||+|++|+++||
T Consensus       301 ~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r~t~sVs  380 (437)
T 2yhb_A          301 FKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVS  380 (437)
T ss_dssp             ---------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC---------
T ss_pred             cccCCCCCceEecccccCCCCceEEEEecccccccCCceEEEEEeCCccccccCCCCHHHHHHHHHHHHHhhccccCCCC
Confidence            257899999999999999999999999999999999999999999998      89999999999999999999999999


Q ss_pred             cccchHHHHHHHHHhhhhhccccCCCCCCCCCCCCccccccCCCCccccccCCCCceeC
Q 018166          302 IVPPAYYAHLAAFRARYYIEDETSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC  360 (360)
Q Consensus       302 lPaP~~yA~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~  360 (360)
                      +|+|+||||++|+|||+|+....++++++++.++ +. ......++.+|.+|+++||||
T Consensus       381 ipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~mfyl  437 (437)
T 2yhb_A          381 ICPPAYYADLVCDRARIHQKELFDALDENDSVKT-DD-FARWGNSGAVHPNLRNSMYYI  437 (437)
T ss_dssp             -CHHHHHHHHHHHHHHHHCHHHHHHHHHTSCCCH-HH-HHHHHHHTSCCGGGTTSCTTC
T ss_pred             cCCHHHHHHHHHHHHHHHhhhhccCCCCCCccCC-CC-ccccccccccCHhhcCCceeC
Confidence            9999999999999999999864322111111111 10 111123578999999999997
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Back     alignment and structure
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis} Back     alignment and structure
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 360
d1yvua2392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 5e-95
d1w9ha1316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 2e-74
d1u04a2447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 2e-69
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  286 bits (733), Expect = 5e-95
 Identities = 49/330 (14%), Positives = 99/330 (30%), Gaps = 63/330 (19%)

Query: 1   MLIIILPDVSGS--------YGRIKRVCETELGIVSQCCQPRQASRLN-MQYFENVALKI 51
           ++I+ L +            Y  +KR    +  I SQ    R     N      NVA ++
Sbjct: 105 LVIVFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQV 163

Query: 52  NVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVT 111
             K G     L +        +  +     G D++       +  ++A         E+ 
Sbjct: 164 LAKTGNIPYKLKE--------IEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELV 215

Query: 112 KYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDG 171
           +Y  L S  A  E++ +                  I ++     +    K  +I+ +RDG
Sbjct: 216 RYY-LTSYPAFGEKLTEK----------------AIGDVFSLLEKLGFKKGSKIVVHRDG 258

Query: 172 VSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSG 231
                       E+ A ++      E Y   +  + + KR++ R F            + 
Sbjct: 259 RLYR-------DEVAAFKKYG----ELYGYSLELLEIIKRNNPRFFS-----------NE 296

Query: 232 NILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCY 291
             + G  +        +       +   +GT +P     +Y E     +       +L  
Sbjct: 297 KFIKGYFYK----LSEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTL 350

Query: 292 TYARCTRSVSIVPPAYYAHLAAFRARYYIE 321
                 + + +    +Y+          IE
Sbjct: 351 MNYSSFQPIKLPATVHYSDKITKLMLRGIE 380
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
d1w9ha1316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 100.0
d1yvua2392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 100.0
d1u04a2447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Hypothetical protein AF1318
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.6e-60  Score=453.32  Aligned_cols=282  Identities=15%  Similarity=0.119  Sum_probs=227.4

Q ss_pred             CEEEEEcCCCCc-hHHHHHHhhhhcCceeeeeeccccccch-hhHHHHHHHHHHhhcCCceeeecccccccCCccCCCCe
Q 018166            1 MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLN-MQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPT   78 (360)
Q Consensus         1 lvl~ilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~-~~~~~ni~lkinaKlGG~n~~l~~~~~~~~p~~~~~~t   78 (360)
                      |||||+|+++.+ |..||++++  .|||||||..+++.+.+ .++++||++|||+||||+||.++..    .|.   .++
T Consensus        18 ~v~~ilp~~~~~~Y~~iK~~l~--~gIptQ~v~~~tl~~~~~~~~~~nI~lqin~KlGG~pw~l~~~----~~~---~~~   88 (316)
T d1w9ha1          18 GIMLVLPEYNTPLYYKLKSYLI--NSIPSQFMRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSD   88 (316)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHH--TTSCEEEEETTCC-----HHHHHHHHHHHHHHTTCBCCEECCC----GGG---TTC
T ss_pred             EEEEEeCCCCchHHHHHHHHhc--cCCCCEEEehhhccCcchHHHHHHHHHHHHHHhCCcceEeccC----CCC---CCe
Confidence            589999999888 999999754  69999999999997655 5667999999999999999999764    122   569


Q ss_pred             EEEEEeecCCCCCCCCCCcEEEEEEeeCCCCcccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHHhc
Q 018166           79 IIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRST  158 (360)
Q Consensus        79 miiGidvsh~~~~~~~~~si~avvaS~d~~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~~  158 (360)
                      ||||+||+|+.     .++++|+++++| .+.+.|.+.+..|..++|.++++             +++++++|..|++.+
T Consensus        89 miIG~dv~h~~-----~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~e~~~~l-------------~~~~~~~l~~~~~~~  149 (316)
T d1w9ha1          89 IIIGTGATRID-----NVNLFCFAMVFK-KDGTMLWNEISPIVTSSEYLTYL-------------KSTIKKVVYGFKKSN  149 (316)
T ss_dssp             EEEEEEEEESS-----SSEEEEEEEEEE-TTSCEEEEEECCCEEGGGHHHHH-------------HHHHHHHHHHHHHHC
T ss_pred             EEEEEEEecCC-----CCeeeEEEEEEc-CCCCEEEEEEEEecCCCchHHHH-------------HHHHHHHHHHHHHHh
Confidence            99999999973     367899999999 99999999998888889999887             999999999998876


Q ss_pred             C-CCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCCee
Q 018166          159 N-FKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGT  237 (360)
Q Consensus       159 ~-~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~~~~~~N~~~Gt  237 (360)
                      + .+|++||+||||.++++.+..++.|.+++++++.+...++.|+|++|+|+|||++|||+.+.       ...||+|||
T Consensus       150 ~~~~p~~Ii~~r~g~~~~~~~~e~~~~~~ai~~~~~~~~~~~~pk~~~I~V~Kr~~~R~f~~~~-------~~~np~~GT  222 (316)
T d1w9ha1         150 PDWDVEKLTLHVSGKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPN-------NRFHPYEGT  222 (316)
T ss_dssp             TTCCCCEEEEEEESSCCCCHHHHHHHHHHHHHHHHHTTSSCTTCEEEEEEEEECCCEEEC--------------CCSSSC
T ss_pred             CCCCCcceEEEECCcccchHHHHHHHHHHHHHHHHHhhccCCCccEEEEEEEeecccccccccc-------cCcCCCCCC
Confidence            5 68899999999999998766555566666666666667789999999999999999998654       246999999


Q ss_pred             eeccccccCCcccEEEeecCCcccc-----ccceeEEEEecCCCC-----CHHHHHHHHHHhHhhcCcCCCCcccccchH
Q 018166          238 VFDTHICHPTEFDFYLNSHAGIQGT-----SRPTHYHVLYDENRF-----SADDFQVLTNNLCYTYARCTRSVSIVPPAY  307 (360)
Q Consensus       238 vVd~~i~~~~~~dF~L~s~~~~~GT-----arP~~Y~vl~d~~~~-----~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~  307 (360)
                      +||.+  .+....||+.++...+|+     ++|+||.|++|+...     +.|+||++||+|||+||++++++|+|+|+|
T Consensus       223 vVd~~--~~~~~~~~~~~~~~~q~~~~~~~~~P~~y~v~~d~~~~~~~~~~~~~l~~~~y~L~~~~~~~t~~v~~Papi~  300 (316)
T d1w9ha1         223 KVKLS--SKRYLLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVN  300 (316)
T ss_dssp             EEESS--SSEEEECCBCTTC-------CEEECCEEEEEEEECCCTTTHHHHHHHHHHHHHHHTTCCTTSSSCCCSCHHHH
T ss_pred             EEecC--CCeeeeEecceeEeeeccCCCCCCcceEEEEEECCCCCCccccCHHHHHHHHHHhhhccCCCCCcCccchhhH
Confidence            99843  444445554444444433     899999999999753     358999999999999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 018166          308 YAHLAAFRARYY  319 (360)
Q Consensus       308 yA~~~a~r~~~~  319 (360)
                      |||++|++....
T Consensus       301 YA~~lA~lvg~~  312 (316)
T d1w9ha1         301 YPKLVAGIIANV  312 (316)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999877653
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure