Citrus Sinensis ID: 018169

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVVKGICLTISVIGYME
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHEEEcccccHHHHHHHcc
Coil and Loop (DISEMBL)
msrapvdhstslsRTFKYLLATQflsrgipfvfnSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRAdikcdgasREENAAKLLKVAWLTLPLGIFITIGACFFVLWwqglsysnpyAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFgafktsdlfpfrlgnmmSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFlpfeessyatfarsasgqypqkskKIGNSLAEALKLVLLIGMFFIELkfslpiyefnfvVKGICLTISVIGYME
Flexible Loop (DISEMBL)
msrapvdhstslsRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFarsasgqypqksKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVVKGICLTISVIGYME
Low Complexity Region (SEG)
MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNllllrlrlVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASlflgywgyfllfgafKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVVKGICLTISVIGYME
Disordered region (IsUnstruct)
*************RTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFA**************GNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVVKGICLTISVIGY**
Disordered Region (DISOPRED)
****************KYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRAC*****************KLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFA****************SLAEALKLVLLIGMFFIELKFSLPIYEFNFVVKGICLTISVIGYM*
Disordered Region (DISEMBL)
**********SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATF*************KIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVVKGICLTISVIGYME
Disordered Region (DISPRO)
**********SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIK*****REENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVVKGICLTISVIGYME
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVVKGICLTISVIGYME
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
Q54IV7	540	Protein RFT1 homolog OS=D	yes	no	0.761	0.507	0.358	2e-42
Q0D2E8	539	Protein RFT1 homolog OS=X	yes	no	0.855	0.571	0.333	7e-36
Q96AA3	541	Protein RFT1 homolog OS=H	yes	no	0.738	0.491	0.319	6e-29
Q8C3B8	541	Protein RFT1 homolog OS=M	yes	no	0.738	0.491	0.319	3e-28
Q5A6N8	561	Oligosaccharide transloca	N/A	no	0.883	0.566	0.275	1e-19
Q9Y123	556	Protein RFT1 homolog OS=D	yes	no	0.858	0.555	0.268	2e-19
O94302	527	Oligosaccharide transloca	yes	no	0.825	0.563	0.260	2e-18
Q6FPE8	551	Oligosaccharide transloca	yes	no	0.880	0.575	0.286	8e-18
P40913	556	Oligosaccharide transloca	yes	no	0.766	0.496	0.251	1e-17
P38206	574	Oligosaccharide transloca	yes	no	0.775	0.486	0.264	1e-16

>sp|Q54IV7|RFT1_DICDI Protein RFT1 homolog OS=Dictyostelium discoideum GN=rft1 PE=3 SV=1

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 173/301 (57%), Gaps = 27/301 (8%)

Query: 18  YLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADI 77
           YL+  Q +SR   F+ N+ ++  + ++ + + A+Q+ L  + +LFLSRE  RRAC R +I
Sbjct: 20  YLIGLQIISRLFTFIINTLVIVGVDDSIFGVSAIQYQLLSSIILFLSREAIRRACTRVNI 79

Query: 78  KCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWW---QGLSYSNPYAQAIFINGF 134
             D  + + N   ++ ++WL LP+GI ++I    F L+    + L   N Y   + +   
Sbjct: 80  T-DKLNNDNNLKSVINLSWLVLPIGIGLSIIFENFFLYTSTKETLEILN-YHYGLRLFTI 137

Query: 135 ACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIV-FALSQ 193
           + +LELL+EP+YIL+QNLLL ++R  VE  A F + F+    IV    +  G++ F  +Q
Sbjct: 138 SSILELLSEPMYILAQNLLLFKIRTTVEGFALFFKTFSTYYFIVI---LNMGLIGFGYAQ 194

Query: 194 VAYAASLFLGYWGYFLLF--------------GAFKTSD-LFPFRLGNMMSYDKQLANMC 238
           + Y+ +L +GY+GYFL+                 FK+ D LFP +    +  D+ L  + 
Sbjct: 195 ILYSLTLVIGYFGYFLINIINNNKNKDNKEFSNCFKSIDQLFP-KFSTRI--DRNLIKLS 251

Query: 239 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFA 298
            L+T+QS  KLLLQEGEK VL + +T   QA++ +V  LGSL+VR +FLP EE+ +  F 
Sbjct: 252 LLYTWQSIYKLLLQEGEKFVLFFSETNQGQAIFAIVSNLGSLIVRFLFLPIEETCFLMFP 311

Query: 299 R 299
           +
Sbjct: 312 K 312

May be involved in N-linked oligosaccharide assembly.
Dictyostelium discoideum (taxid: 44689)

>sp|Q0D2E8|RFT1_XENTR Protein RFT1 homolog OS=Xenopus tropicalis GN=rft1 PE=2 SV=1

 Score =  151 bits (382), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 118/354 (33%), Positives = 185/354 (52%), Gaps = 46/354 (12%)

Query: 13  SRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRAC 72
           ++   Y +  Q L R + F  N++ +R++++    I  V+  LF T V+FL+RE FRRAC
Sbjct: 11  TKLASYSVILQILFRVLTFALNAFTLRYVSKEIIGIVNVRLTLFYTTVVFLAREAFRRAC 70

Query: 73  MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACF-FVL---WWQGLSYSNP---- 124
           +         S +++    + + WL +PLGI      C+ F+L   W Q L    P    
Sbjct: 71  L-------SHSAQQSWRHTIHLTWLAVPLGI------CWSFILGWIWLQILEVPEPEAIP 117

Query: 125 -YAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIV--KQY 181
            Y   ++  GF+ V+ELLAEP ++L+Q  L ++L++V E++A   RC    IL++   Q+
Sbjct: 118 YYNIGVWAFGFSAVVELLAEPFWVLAQAHLFVKLKVVAESLAIIIRCSVTVILVLLCPQW 177

Query: 182 EMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSY----------- 230
            +   ++F+L+QV Y ++L L Y  YF  F     ++  PF L  M  +           
Sbjct: 178 GL---LIFSLAQVLYTSALALCYIAYFARFLGSLEAEKKPFPLRRMREFLPRFSSSQAFL 234

Query: 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLP 288
           D + A +   F  QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R +FLP
Sbjct: 235 DWKQAWLAWSFFKQSFLKQILTEGERYVMTFLNVLSFGDQGVYDIVNNLGSLVARFIFLP 294

Query: 289 FEESSYATFARS-ASGQYPQKSKKIGNSLAEA-----LKLVLLIGMFFIELKFS 336
            EES Y  FA+    G+  Q  +K   S+A       LKLV LIG+  I   ++
Sbjct: 295 IEESFYVFFAKVLERGKKVQSQRKEEISMASEVLESLLKLVTLIGLVIIAFGYA 348

May be involved in N-linked oligosaccharide assembly. May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Xenopus tropicalis (taxid: 8364)

>sp|Q96AA3|RFT1_HUMAN Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 SV=1

 Score =  128 bits (322), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 158/297 (53%), Gaps = 31/297 (10%)

Query: 23  QFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGA 82
           Q L R I FV N++I+R L++    +  V+  L  +  LFL+RE FRRAC+    + D  
Sbjct: 21  QVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTLFLAREAFRRACLSGGTQRD-- 78

Query: 83  SREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----YAQAIFINGFACV 137
                 ++ L + WLT+PLG+F ++   +  +W Q L   +P     YA  + + G + V
Sbjct: 79  -----WSQTLNLLWLTVPLGVFWSLFLGW--IWLQLLEVPDPNVVPHYATGVVLFGLSAV 131

Query: 138 LELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGI-VFALSQVAY 196
           +ELL EP ++L+Q  + ++L+++ E+++   +      L++  +    G+ +F+L+Q+ Y
Sbjct: 132 VELLGEPFWVLAQAHMFVKLKVIAESLSVILKSVLTAFLVL--WLPHWGLYIFSLAQLFY 189

Query: 197 AASLFLGYWGYFL-LFGA-----------FKTSDLFPFRLGNMMSYDKQLANMCTLFTFQ 244
              L L Y  YF  L G+            + +DL P    N    + + A +   F  Q
Sbjct: 190 TTVLVLCYVIYFTKLLGSPESTKLQTLPVSRITDLLPNITRNGAFINWKEAKLTWSFFKQ 249

Query: 245 SFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 299
           SF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES Y  FA+
Sbjct: 250 SFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPIEESFYIFFAK 306

May be involved in N-linked oligosaccharide assembly. May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Homo sapiens (taxid: 9606)

>sp|Q8C3B8|RFT1_MOUSE Protein RFT1 homolog OS=Mus musculus GN=Rft1 PE=2 SV=2

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 154/297 (51%), Gaps = 31/297 (10%)

Query: 23  QFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGA 82
           Q L R I FV N++I+R L++    I  V+  L  +   FL+RE FRRAC+       GA
Sbjct: 21  QVLFRLITFVLNAFILRFLSKEIVGIVNVRLTLLYSTTTFLAREAFRRACLSG-----GA 75

Query: 83  SREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----YAQAIFINGFACV 137
            R+ +  + L + WLT+PLGIF +  +C   +W Q L   +P     Y   +   G + V
Sbjct: 76  QRDWS--QTLNLLWLTVPLGIFWS--SCLGWVWLQLLEVPDPDVVPYYGTGVLFFGLSAV 131

Query: 138 LELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGI-VFALSQVAY 196
           +ELL EP ++L+Q  + ++L+++ E+++   R     +L++  +    G+ +F+L+Q+ Y
Sbjct: 132 VELLGEPFWVLAQAHMFVKLKVLAESMSVILRSVLTALLVL--WLPHWGLYIFSLAQLLY 189

Query: 197 AASLFLGYWGYF------------LLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQ 244
              L L Y  Y             L     + + L P    +    + + A +   F  Q
Sbjct: 190 TTVLVLCYAIYLIQLLRSPESAKQLTLPVSRVTQLLPSISRSRAFVNWKEAGLAWSFFKQ 249

Query: 245 SFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 299
           SF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES Y  FA+
Sbjct: 250 SFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPVEESFYLFFAK 306

May be involved in N-linked oligosaccharide assembly. May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Mus musculus (taxid: 10090)

>sp|Q5A6N8|RFT1_CANAL Oligosaccharide translocation protein RFT1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RFT1 PE=3 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 174/367 (47%), Gaps = 49/367 (13%)

Query: 2   SRAPVDHSTSLSRTFK---YLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVT 58
           S+ P + +   + + K   +L+  Q +++ + FV N  I+R+L+ +   I  V  +L   
Sbjct: 6   SKQPGNDANDANSSVKGVSHLIIVQIIAKLLTFVLNQLIIRYLSPS---IIGVTTYLEFI 62

Query: 59  C--VLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLG--IFITIGACFFVL 114
           C  +LF SRE  R +  R  ++ +  +++  A K++    L +     IF+ IG      
Sbjct: 63  CSTILFFSRESIRLSVQR--VRNNSDNKDYVAQKVVNFGILAIAFAFPIFMVIG------ 114

Query: 115 WWQGLSYSN--------PYAQAIFINGFACV-LELLAEPLYILSQNLLLLRLRLVVETVA 165
           +WQ L+YS+        P+ + + +   A V LELL EP+Y L Q  L    R   E  A
Sbjct: 115 YWQ-LNYSSVMDKLFVSPFYKPVIVLFVASVILELLVEPIYCLYQFQLDFGKRSKFEGSA 173

Query: 166 TFSRCFT--MCILIVKQYEMEK---GIV---FALSQVAYAASLFLGYWGYFLL-FGAFKT 216
            F +C    + IL+ +QY +++   G+    FAL+Q +Y+ +LF  Y   F   F   K 
Sbjct: 174 IFVKCIVSVLSILLARQYFVDQKFEGVAICAFALAQFSYSLTLFACYLMSFRFEFQNNKI 233

Query: 217 S-DLFPFRLGNMMSY--DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGL 273
           + +L   +  N   +  ++    +   F  Q   K  L EG+KL++  L T   Q +Y +
Sbjct: 234 NYNLVKLKDENAREFYFEQDTLTIVKGFFVQMIFKQFLTEGDKLLISHLCTIEEQGMYAV 293

Query: 274 VDKLGSLVVRMVFLPFEESSYATF-------ARSASGQYPQKSKKIGNSLAEALKLVLLI 326
           +   GS++ R++F P EES+   F        RS   + PQKS+   +   +    + LI
Sbjct: 294 MANYGSIIARLLFQPLEESTRLMFTKLLNENTRSQGDEKPQKSE--SHKCMQTFNYLKLI 351

Query: 327 GMFFIEL 333
            +F+  L
Sbjct: 352 SIFYFNL 358

May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q9Y123|RFT1_DROME Protein RFT1 homolog OS=Drosophila melanogaster GN=CG3149 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 168/369 (45%), Gaps = 60/369 (16%)

Query: 23  QFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGA 82
           Q L R + F  N++IVRH+      I  V+  L  + +LFLSRE   RA + A+ +    
Sbjct: 20  QILCRILTFGINAYIVRHVGREVLGIMNVRLLLLESTLLFLSREAINRAALSANAQ---Q 76

Query: 83  SREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLS-----YSNPYAQAIFINGFACV 137
               + A+L+   WLT+P+   +    C ++ W   LS     Y++ Y  A +   F+CV
Sbjct: 77  GDRCSWAQLINQMWLTVPI-CAVLCAPCLYI-WLNWLSAVDAIYASQYEFACYAVAFSCV 134

Query: 138 LELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYA 197
           LEL+AE    ++Q    ++L++++ T+    R   + + IV          FA++Q++ A
Sbjct: 135 LELMAESAVFVAQVFCFVKLKILLNTLHILVRS-AIFLWIVTGDRSAAINAFAIAQLSSA 193

Query: 198 ASLFLGYWGYFLLF------------------------GAFKTSDLFPFRL--------- 224
            ++ LG +G+F  +                          ++  D FPF+          
Sbjct: 194 VTIVLGQYGFFYFYLKGFKDFVTQQAKKKPVAPKAWQVSLYEHMDDFPFKQLSDFLPGVM 253

Query: 225 --GNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY----NQAVYGLVDKLG 278
              N   ++++L  +   F  Q   K +L EGEK V+    +P      QA Y +V+ LG
Sbjct: 254 FNPNGKHFNRELQTLTLSFVKQGVLKQILTEGEKYVMS--VSPVLSFGEQATYDVVNNLG 311

Query: 279 SLVVRMVFLPFEESSYATFARSAS-----GQYPQKSKKIGNSLAEALKL-VLLIGM--FF 330
           S+  R +F P E+SSY  F ++ S      + PQ+  +  +S+   L L V  IG+  F 
Sbjct: 312 SMAARFIFRPIEDSSYFYFTQTLSRDIKLAKQPQERVRQASSVLNNLLLGVSSIGLIAFT 371

Query: 331 IELKFSLPI 339
               +S P+
Sbjct: 372 FGQSYSYPV 380

May be involved in N-linked oligosaccharide assembly.

Drosophila melanogaster (taxid: 7227)

>sp|O94302|RFT1_SCHPO Oligosaccharide translocation protein rft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rft1 PE=3 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 145/323 (44%), Gaps = 26/323 (8%)

Query: 26  SRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMR---ADIKCDGA 82
           SR + F  N   +R  + + YA  ++ F +  + +LFLSRE  R A  R    +      
Sbjct: 25  SRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTILFLSRESVRLAMQRIPSENAIITST 84

Query: 83  SREENAAKLL--------KVAWLTLPLGIFITIGACFFVLWWQGLSYSN-PYAQA-IFIN 132
           S E N +K L          + +++ +GI I++    F  +    S  N PY++  IFI 
Sbjct: 85  STESNKSKKLSDQLQLIKNTSLISVYIGIVISLLVSLFYFY----SLPNFPYSKTCIFIY 140

Query: 133 GFACVLELLAEPLYILSQNLLLLRLRLVVETVATF-SRCFTMCILIVKQYEMEKGIVFAL 191
             +  +ELL+EP Y + Q           E + T      +  I ++ + +    + FAL
Sbjct: 141 TVSSFIELLSEPYYEVLQWRQKFSKTASAEGLGTIICSLLSFAISVLGRNKAPSSLPFAL 200

Query: 192 SQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSY---DKQLANMCTLFTFQSFRK 248
             ++   ++F     + L + A +   +F  ++G    Y   D     +    T+Q   K
Sbjct: 201 GNLSEKVTIF-----FTLRYFAKQPFSIFLHKVGENERYIFWDSSTLRIICSHTYQVLLK 255

Query: 249 LLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQK 308
            L+ +G+K+++ W  +P  Q  Y L    GSL+ R+VF P E+ S+  FA+    +  + 
Sbjct: 256 HLITKGDKIMVAWYASPSAQGPYALASNYGSLLARIVFRPVEDHSHIVFAQLTHYKNKKD 315

Query: 309 SKKIGNSLAEALKLVLLIGMFFI 331
            KK  N LA  LKL   + +F +
Sbjct: 316 EKKALNLLAWILKLYSYMSLFIL 338

May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6FPE8|RFT1_CANGA Oligosaccharide translocation protein RFT1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RFT1 PE=3 SV=1

 Score = 91.7 bits (226), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 182/384 (47%), Gaps = 67/384 (17%)

Query: 1   MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCV 60
           MS A +   T+   TF  L+  Q  S+ + F+ N+ +VR+L+   + I A      V  V
Sbjct: 1   MSGADILEKTTRGATF--LMMGQLFSKIVTFLLNNTLVRYLSPRIFGITAF-LEFIVGTV 57

Query: 61  LFLSREGFRRACMRADIKCDGASREEN-------AAKLLKVAWLTLPL--GIFITIGACF 111
           LF SRE  R +  R     DG   + +       +A  + V +  +PL  GI ++IG   
Sbjct: 58  LFFSREAIRLSTQRI---ADGNDADNDHDHDRDDSALQVCVNFAMIPLFIGIPLSIG--- 111

Query: 112 FVLWWQ-----GLSYSNPYAQ-AIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA 165
            ++ WQ     G   + P+ Q ++F      +LEL+ EPL++L+Q+ L    R   E++A
Sbjct: 112 -LIAWQYHNINGYFVTLPFFQWSVFAIWVGIILELVNEPLFVLNQHFLNYGARSRYESIA 170

Query: 166 TFSRC---FTMCI-----LIVKQY-----EMEKGIV---FALSQVAYAASLFLGYWGYFL 209
             + C   FT+       LI+  Y        +GI    FAL ++AYAA+L + Y+  +L
Sbjct: 171 VTANCLVNFTVVYSYEKKLILTSYFDDSERFREGIAILAFALGKLAYAATLLMCYYYNYL 230

Query: 210 LFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQS-----FRKL--------LLQEGEK 256
           +   FK++   PF+L   +   K   N    + F+S     F+K+        LL EG+K
Sbjct: 231 M--NFKSNK--PFKLS--LQKIKSKVNEKQTYYFRSDILEHFKKVYFQLCFKHLLTEGDK 284

Query: 257 LVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSL 316
           L++    T   Q +Y L+   GSL+ R++F P EES     A          SKK   +L
Sbjct: 285 LIINTFCTVEEQGIYSLLSNYGSLITRLLFAPIEESLRLLLAVLL-------SKKDSKNL 337

Query: 317 AEALKLVLLIGMFFIELKFSLPIY 340
             ++K+++ +  F++ L   + I+
Sbjct: 338 QLSMKVLVNLTKFYLYLSLLVMIF 361

May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|P40913|RFT1_KLULA Oligosaccharide translocation protein RFT1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RFT1 PE=3 SV=2

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 149/326 (45%), Gaps = 50/326 (15%)

Query: 7   DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSRE 66
           +H    +    +L+  Q LS+G+ F+ N+ +VR+L+   + I +      ++ VLF SRE
Sbjct: 6   EHMNKFANGVLFLMLGQTLSKGVNFLLNTLLVRYLSPRIFGITSF-LEFLLSTVLFFSRE 64

Query: 67  GFRRACMRADIKCDGASREE--------NAAKLLKVAWLTLPLGIFITIGACFFVLWWQG 118
             R + +R     D    E+            L+   ++   +G+ ++I     ++ WQ 
Sbjct: 65  SIRISTLRIKSTTDSGKLEKVEDGEDTRTLQSLINFGYIPFVIGLPLSI----ILISWQ- 119

Query: 119 LSYSN--------PYAQA-IFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSR 169
             YSN        PY +A IF+   + ++EL++EP Y++ Q LL   +R   E++     
Sbjct: 120 --YSNLNSYFIDLPYFKASIFLIWLSILIELVSEPFYLVHQYLLNHFIRSKYESLGVTFA 177

Query: 170 CFTMCILIVKQYEMEKGI----------------VFALSQVAYAASLFLGYWGYFLLFGA 213
           C    I++V   +M  G+                 FA+ ++ +A +L L  + Y      
Sbjct: 178 CVANFIIVVWFEKMVNGVGLELHDDYKQEGIAIFAFAVGKLVHAMTL-LACYSYNYYSEV 236

Query: 214 FKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKL--------LLQEGEKLVLVWLDTP 265
           + T + + ++L  +    +Q +      T Q F+K+        LL EG+KL++  L T 
Sbjct: 237 YTTGERYSYKLTKIRPETRQESYYFQNDTVQHFKKVYFQLCFKHLLTEGDKLIINSLCTV 296

Query: 266 YNQAVYGLVDKLGSLVVRMVFLPFEE 291
             Q +Y L+   GSL+ R++F P EE
Sbjct: 297 EEQGIYSLLSNYGSLITRLLFAPIEE 322

May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|P38206|RFT1_YEAST Oligosaccharide translocation protein RFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFT1 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 152/351 (43%), Gaps = 72/351 (20%)

Query: 18  YLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVT-CVLFLSREGFRRACMRAD 76
           +L+  Q  ++ + F+ N+ ++R L+   + I A  F  F+   VLF SR+  R + +R  
Sbjct: 25  FLMMGQLFTKLVTFILNNLLIRFLSPRIFGITA--FLEFIQGTVLFFSRDAIRLSTLRIS 82

Query: 77  IKCDGA---------SREENAAKLLKVA--------WLTLPLGI------FITIGACFFV 113
              +G                +K+L+ A        W+  PL I      +  I A F  
Sbjct: 83  DSGNGIIDDDDEEEYQETHYKSKVLQTAVNFAYIPFWIGFPLSIGLIAWQYRNINAYFIT 142

Query: 114 LWWQGLSYSNPYAQ-AIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFT 172
           L         P+ + +IF+   + ++ELL+EP +I++Q +L    R   E++A  + C  
Sbjct: 143 L---------PFFRWSIFLIWLSIIVELLSEPFFIVNQFMLNYAARSRFESIAVTTGCIV 193

Query: 173 MCILI--VKQYEMEKGIV-------------FALSQVAYAASLFLGY-WGYFLLFGAFKT 216
             I++  V+Q     G+V             FAL ++A++ +L   Y W Y      FK 
Sbjct: 194 NFIVVYAVQQSRYPMGVVTSDIDKEGIAILAFALGKLAHSITLLACYYWDYL---KNFKP 250

Query: 217 SDLFPFRLGNMMS---------YDKQLANMCTLFTFQSFRKL--------LLQEGEKLVL 259
             LF  RL  + +         Y K  +        Q F+K+        LL EG+KL++
Sbjct: 251 KKLFSTRLTKIKTRENNELKKGYPKSTSYFFQNDILQHFKKVYFQLCFKHLLTEGDKLII 310

Query: 260 VWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310
             L T   Q +Y L+   GSL+ R++F P EES     AR  S   P+  K
Sbjct: 311 NSLCTVEEQGIYALLSNYGSLLTRLLFAPIEESLRLFLARLLSSHNPKNLK 361

Involved in N-linked oligosaccharide assembly. Required for the translocation of Man(5)GlcNAc(2)-PP-dolichol from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
356531685	518	PREDICTED: protein RFT1 homolog [Glycine	0.927	0.644	0.733	1e-144
255539823	436	Oligosaccharide translocation protein rf	0.95	0.784	0.735	1e-141
356544271	518	PREDICTED: LOW QUALITY PROTEIN: protein	0.927	0.644	0.713	1e-140
449458359	528	PREDICTED: protein RFT1 homolog [Cucumis	0.908	0.619	0.753	1e-138
334187490	611	lipid transporter [Arabidopsis thaliana]	0.933	0.549	0.699	1e-137
224138472	476	predicted protein [Populus trichocarpa]	0.819	0.619	0.765	1e-125
38260621	481	nuclear division RFT1-like protein [Sisy	0.819	0.613	0.735	1e-123
38260690	478	nuclear division RFT1-like protein [Arab	0.819	0.617	0.711	1e-120
38260636	478	nuclear division RFT1-like protein [Arab	0.819	0.617	0.711	1e-120
297806793	478	hypothetical protein ARALYDRAFT_325378 [	0.819	0.617	0.711	1e-120

>gi|356531685|ref|XP_003534407.1| PREDICTED: protein RFT1 homolog [Glycine max]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/338 (73%), Positives = 285/338 (84%), Gaps = 4/338 (1%)

Query: 8   HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREG 67
            +T+LSRTFKYLLATQFLSRGIPF+FN+WIVRHLT+ DYA+YAVQFHL VTC+LFLSREG
Sbjct: 6   DATNLSRTFKYLLATQFLSRGIPFIFNTWIVRHLTQEDYALYAVQFHLLVTCILFLSREG 65

Query: 68  FRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQ 127
           FRRAC+R D+KCDG+S  +   KL+KV W++ PLGIFITI  C FV WWQ +SYS+P+ Q
Sbjct: 66  FRRACLRMDLKCDGSSMGD-VVKLMKVVWMSFPLGIFITIVVCLFVFWWQQISYSSPHGQ 124

Query: 128 AIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGI 187
           AI INGFAC+LELLAEP+YILSQNL+LL LRL+VETVAT SRC TM  LIVKQ  MEK I
Sbjct: 125 AILINGFACILELLAEPVYILSQNLVLLELRLMVETVATLSRCLTMYFLIVKQTGMEKSI 184

Query: 188 VFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFR 247
           +FALSQ AY A LFLGYWGY LL   F+ S LFPFR G M+ +D+QL+ MC LFTFQSFR
Sbjct: 185 IFALSQSAYGACLFLGYWGYLLLSQKFRVSYLFPFREGKMIDFDQQLSKMCILFTFQSFR 244

Query: 248 KLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQ 307
           KL+LQEGEK+VLVWLDTPYNQAVYGLVDKLGSLVVR+VFLPFEESSY TFARSASGQYP 
Sbjct: 245 KLILQEGEKIVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEESSYVTFARSASGQYPG 304

Query: 308 KSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFV 345
           KSKK+GNSL E+LKLVLLIG+ F+      P Y ++ +
Sbjct: 305 KSKKLGNSLTESLKLVLLIGLVFMAFG---PSYSYSLI 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539823|ref|XP_002510976.1| Oligosaccharide translocation protein rft1, putative [Ricinus communis] gi|223550091|gb|EEF51578.1| Oligosaccharide translocation protein rft1, putative [Ricinus communis]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 258/351 (73%), Positives = 288/351 (82%), Gaps = 9/351 (2%)

Query: 1   MSRAPV------DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFH 54
           MS A V          + SRTFKYLLATQFLSRGIPF+FNSWI+RHLTE DYAIYAVQFH
Sbjct: 1   MSNASVVQPQAESSDANFSRTFKYLLATQFLSRGIPFIFNSWIIRHLTEQDYAIYAVQFH 60

Query: 55  LFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVL 114
           LFVTCVLFLSREGFRRACMRA++K DG S E  A KLLKVAW+TLPLGI IT  AC FV 
Sbjct: 61  LFVTCVLFLSREGFRRACMRAEVKSDGTSSEAYALKLLKVAWMTLPLGIVITFAACIFVF 120

Query: 115 WWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMC 174
           WWQGL+ ++ YAQAI IN  AC+LELLAEPLYILSQNLLLL+LRL+ ETVAT  RC TM 
Sbjct: 121 WWQGLNLNDSYAQAILINACACILELLAEPLYILSQNLLLLKLRLMAETVATLLRCLTMY 180

Query: 175 ILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQL 234
           ILIV+Q  MEK IVFALSQ AY A LF+GYW YFLLF +F +S+LFPFRLG +M YDKQL
Sbjct: 181 ILIVRQPGMEKDIVFALSQTAYGACLFIGYWSYFLLFCSFGSSELFPFRLGTIMDYDKQL 240

Query: 235 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSY 294
            NMC LFT QSFRKL+LQEGEK+VLVWLDTPYNQAVYGLVDKLGSLVVR+VFLPFEESSY
Sbjct: 241 CNMCMLFTLQSFRKLVLQEGEKMVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEESSY 300

Query: 295 ATFARSASGQYPQKSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFV 345
           ATFARSASGQ+P+K +K+G  L EALKLVLLIG+ F+      P Y ++ +
Sbjct: 301 ATFARSASGQHPEKRRKLGGYLTEALKLVLLIGLVFMAFG---PSYSYSLI 348

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544271|ref|XP_003540577.1| PREDICTED: LOW QUALITY PROTEIN: protein RFT1 homolog [Glycine max]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/338 (71%), Positives = 281/338 (83%), Gaps = 4/338 (1%)

Query: 8   HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREG 67
            +T+LSRTFKYLLATQFLSRGIPF+FN+WIVRHLT+ DYA+YAVQFHL VTC+LFLSREG
Sbjct: 6   DATNLSRTFKYLLATQFLSRGIPFIFNTWIVRHLTQEDYALYAVQFHLLVTCILFLSREG 65

Query: 68  FRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQ 127
           FRRAC+R D+KCDG S  +   KL+KV W++ PLGIFIT+  C FV WWQ +SYS+P+ Q
Sbjct: 66  FRRACLRMDLKCDGTSMGD-VVKLMKVVWMSFPLGIFITVVVCLFVFWWQQISYSSPHGQ 124

Query: 128 AIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGI 187
           AI INGFAC+LELLAEP+YILSQNL+LL LRL+VETVAT S C TM  LIVKQ  +EK I
Sbjct: 125 AILINGFACILELLAEPVYILSQNLVLLELRLMVETVATLSWCLTMYFLIVKQTGIEKSI 184

Query: 188 VFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFR 247
           +FALSQ AY A LFLGYWGY LL   F+ S LFPFR G ++ +D+QL+ MC LFTFQSFR
Sbjct: 185 IFALSQSAYGACLFLGYWGYLLLSQKFRVSYLFPFREGKVIDFDRQLSKMCMLFTFQSFR 244

Query: 248 KLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQ 307
           KL+LQEGEK+VLVWLDTPYNQAVYGLVDK GSLVVR+VFLPFEESSYATFARS SGQYP 
Sbjct: 245 KLILQEGEKIVLVWLDTPYNQAVYGLVDKFGSLVVRLVFLPFEESSYATFARSTSGQYPG 304

Query: 308 KSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFV 345
           KSKK+GN + E+LKLVLLIG+ F+      P Y ++ +
Sbjct: 305 KSKKLGNGVTESLKLVLLIGLVFMAFG---PSYSYSLI 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458359|ref|XP_004146915.1| PREDICTED: protein RFT1 homolog [Cucumis sativus] gi|449520289|ref|XP_004167166.1| PREDICTED: protein RFT1 homolog [Cucumis sativus]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/328 (75%), Positives = 285/328 (86%), Gaps = 1/328 (0%)

Query: 4   APVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFL 63
           A  + +T+LSRTF+YL+ATQFLSRGIPF+FN WIVRHLTE DYA+YAVQFHLFVTCVLFL
Sbjct: 13  ATDNDATNLSRTFRYLMATQFLSRGIPFIFNLWIVRHLTEEDYAVYAVQFHLFVTCVLFL 72

Query: 64  SREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSN 123
           SREGFRRACMRA++  D  S EEN+ +LLKVAWL+ PLG+FIT+ AC  VLWW+ +  SN
Sbjct: 73  SREGFRRACMRAELS-DSTSVEENSRRLLKVAWLSFPLGLFITLAACNLVLWWRNIPLSN 131

Query: 124 PYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEM 183
           PYAQAI ING AC+LELLAEPLYILSQ LLLL+LRL+VET+ATFSRC TM IL+V+   M
Sbjct: 132 PYAQAILINGCACILELLAEPLYILSQTLLLLKLRLLVETMATFSRCMTMYILLVRGSNM 191

Query: 184 EKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTF 243
           EKGI+FALSQ AY A LFLGYW YFL F AFK SDLFPFR+GNM  +DK+L+NMC LFT 
Sbjct: 192 EKGIIFALSQSAYGACLFLGYWVYFLNFRAFKWSDLFPFRVGNMKDFDKKLSNMCILFTL 251

Query: 244 QSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASG 303
           QSFRKL+LQEGEK+VLVWLDTPYNQAVYGLVDKLGSLVVR+VFLPFEESSY TFARSASG
Sbjct: 252 QSFRKLVLQEGEKMVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEESSYTTFARSASG 311

Query: 304 QYPQKSKKIGNSLAEALKLVLLIGMFFI 331
           +YP K++K+   L+EALKLV+LIG+ F+
Sbjct: 312 EYPDKTRKLAICLSEALKLVVLIGLIFM 339

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187490|ref|NP_196380.5| lipid transporter [Arabidopsis thaliana] gi|332003804|gb|AED91187.1| lipid transporter [Arabidopsis thaliana]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/339 (69%), Positives = 280/339 (82%), Gaps = 3/339 (0%)

Query: 7   DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSRE 66
           D++ +LSR FK+ L+ QF+SR IPFVFNSWIVRHLTE DYA+YA+QFHLFVTCVLFLSRE
Sbjct: 95  DNNVNLSRIFKFSLSRQFISRSIPFVFNSWIVRHLTERDYALYAIQFHLFVTCVLFLSRE 154

Query: 67  GFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYA 126
           GFRRAC+RA  K DG   EEN  ++LKVAW+T+PLGI ITI AC FVLWWQ LSYS+PYA
Sbjct: 155 GFRRACLRAGTKRDGPESEENVTRILKVAWVTVPLGIAITIAACIFVLWWQNLSYSDPYA 214

Query: 127 QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKG 186
           QAI+I+GFACVLEL+AEPLYILSQ LL L+LRL+VETVAT +RC T+  L+V Q  MEK 
Sbjct: 215 QAIWIHGFACVLELMAEPLYILSQTLLKLQLRLIVETVATLARCVTLYSLLVMQTNMEKV 274

Query: 187 IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSF 246
           I+FALSQVAY  SLF+GYW YFL+ G +++S+LFPFR GN M +D  L+ MC LFTFQSF
Sbjct: 275 IIFALSQVAYGGSLFIGYWAYFLICGVYRSSNLFPFRPGNFMDFDNDLSKMCKLFTFQSF 334

Query: 247 RKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYP 306
           RKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLGSLVVRMVFLPFEESSY  FAR ASG Y 
Sbjct: 335 RKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGSLVVRMVFLPFEESSYTIFARFASGDYQ 394

Query: 307 QKSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFV 345
           +++KK+G  L  ALKLV+LIG+ F+      P Y ++ +
Sbjct: 395 ERNKKLGIYLTVALKLVILIGLIFMAFG---PSYSYSLI 430

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138472|ref|XP_002326611.1| predicted protein [Populus trichocarpa] gi|222833933|gb|EEE72410.1| predicted protein [Populus trichocarpa]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/298 (76%), Positives = 257/298 (86%), Gaps = 3/298 (1%)

Query: 48  IYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITI 107
           +YAVQFHLFVTCVLFLSREGFRRACMRADIKCDGAS EE AAKLLKVAW+TLPLG+  TI
Sbjct: 3   LYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASTEEYAAKLLKVAWITLPLGVVTTI 62

Query: 108 GACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATF 167
            AC FV WWQGL+YS+PYAQAI ING AC+LELLAEPLYI+SQNLLLL+LRL+VET AT 
Sbjct: 63  SACVFVFWWQGLTYSDPYAQAILINGCACILELLAEPLYIVSQNLLLLKLRLIVETAATL 122

Query: 168 SRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNM 227
            RC TM ILIVKQ  M+KGIVFALSQ AY A LFLGYW YF+LF AF++S LFPFRLG +
Sbjct: 123 LRCLTMYILIVKQTSMDKGIVFALSQTAYGACLFLGYWSYFVLFRAFRSSVLFPFRLGTI 182

Query: 228 MSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFL 287
           M YDKQL++MC LFT QSF+KL+LQEGEK VLVWLDTPYNQAVYGLVDKLG LVVR+VFL
Sbjct: 183 MDYDKQLSSMCVLFTLQSFQKLILQEGEKFVLVWLDTPYNQAVYGLVDKLGILVVRLVFL 242

Query: 288 PFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFV 345
           PFEESSYATFARSASG+ P KS+K+G+ L+EALKLVLLIG+ F+      P Y ++ +
Sbjct: 243 PFEESSYATFARSASGKDPNKSRKLGSCLSEALKLVLLIGVVFMTFG---PSYSYSLI 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260621|gb|AAR15439.1| nuclear division RFT1-like protein [Sisymbrium irio]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/299 (73%), Positives = 249/299 (83%), Gaps = 4/299 (1%)

Query: 48  IYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITI 107
           +YAVQFHLFVTCVLFLSREGFRRAC+RADI  DG   E +  KLLKVAW+TLPLGI ITI
Sbjct: 3   LYAVQFHLFVTCVLFLSREGFRRACLRADINSDGRVSEMDVTKLLKVAWVTLPLGIVITI 62

Query: 108 GACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATF 167
            AC FV WWQ LSYS+ YAQAI I+GF+CVLEL+AEPLYILSQ L+LL+LRLVVETVATF
Sbjct: 63  AACIFVFWWQNLSYSDTYAQAILIHGFSCVLELMAEPLYILSQTLMLLKLRLVVETVATF 122

Query: 168 SRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNM 227
           SRC T+C LIVKQ  MEKGI+FALSQVAY  SLFLGYW YFL+ G FK+ +LFPFR GN 
Sbjct: 123 SRCVTLCFLIVKQTNMEKGIIFALSQVAYGGSLFLGYWAYFLVRGIFKSLNLFPFRRGNF 182

Query: 228 MSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFL 287
           M +DK L++MC LFTFQSFRKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVFL
Sbjct: 183 MDFDKPLSSMCMLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFL 242

Query: 288 PFEESSYATFARSASG-QYPQKSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFV 345
           PFEESSY TFAR ASG  Y QK K++G  L EALKLV+LIG+ F+      P Y ++ +
Sbjct: 243 PFEESSYTTFARFASGDDYQQKRKRLGICLTEALKLVMLIGLVFMAFG---PGYSYSLI 298

Source: Sisymbrium irio

Species: Sisymbrium irio

Genus: Sisymbrium

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260690|gb|AAR15504.1| nuclear division RFT1-like protein [Arabidopsis arenosa]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/298 (71%), Positives = 244/298 (81%), Gaps = 3/298 (1%)

Query: 48  IYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITI 107
           +YAVQFHLFVTCVLFLSREGFRRAC+RA+IK DG   EEN  +LLKVAW+T+PLGI ITI
Sbjct: 3   LYAVQFHLFVTCVLFLSREGFRRACLRANIKRDGPGSEENVTRLLKVAWMTVPLGIAITI 62

Query: 108 GACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATF 167
            AC FVLWWQ LSYS+ YAQAI I+GFAC+LEL+AEPLYILSQ L+ L LRL VE  ATF
Sbjct: 63  AACIFVLWWQNLSYSDTYAQAILIHGFACLLELMAEPLYILSQTLVKLELRLFVEIAATF 122

Query: 168 SRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNM 227
           +RC T+  LIV Q  MEKGIVFALSQVAY  SLFLGYW YFL+ GA ++SDLFPFR GN 
Sbjct: 123 ARCLTLWSLIVNQTNMEKGIVFALSQVAYGGSLFLGYWAYFLISGALRSSDLFPFRPGNF 182

Query: 228 MSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFL 287
           M +D +L+NMC LFTFQSFRKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVF 
Sbjct: 183 MDFDNKLSNMCMLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFF 242

Query: 288 PFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFV 345
           PFEE+SY  FAR ASG Y ++ KK+G  L EALKLV+LIG+ F+      P Y ++ +
Sbjct: 243 PFEETSYTIFARFASGDYQERKKKLGIGLTEALKLVILIGLIFMAFG---PSYSYSLI 297

Source: Arabidopsis arenosa

Species: Arabidopsis arenosa

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260636|gb|AAR15453.1| nuclear division RFT1-like protein [Arabidopsis arenosa]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/298 (71%), Positives = 244/298 (81%), Gaps = 3/298 (1%)

Query: 48  IYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITI 107
           +YAVQFHLFVTCVLFLSREGFRRAC+RA+IK DG   EEN  +LLKVAW+T+PLGI ITI
Sbjct: 3   LYAVQFHLFVTCVLFLSREGFRRACLRANIKRDGPGSEENVTRLLKVAWMTVPLGIAITI 62

Query: 108 GACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATF 167
            AC FVLWWQ LSYS+ YAQAI I+GFAC+LEL+AEPLYILSQ L+ L LRL VE  ATF
Sbjct: 63  AACIFVLWWQNLSYSDTYAQAILIHGFACLLELMAEPLYILSQTLVKLELRLFVEIAATF 122

Query: 168 SRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNM 227
           +RC T+  LIV Q  MEKGIVFALSQVAY  SLFLGYW YFL+ GA ++SDLFPFR GN 
Sbjct: 123 ARCLTLWSLIVNQTNMEKGIVFALSQVAYGGSLFLGYWTYFLISGALRSSDLFPFRPGNF 182

Query: 228 MSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFL 287
           M +D +L+NMC LFTFQSFRKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVF 
Sbjct: 183 MDFDNKLSNMCMLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFF 242

Query: 288 PFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFV 345
           PFEE+SY  FAR ASG Y ++ KK+G  L EALKLV+LIG+ F+      P Y ++ +
Sbjct: 243 PFEETSYTIFARFASGDYQERKKKLGIGLTEALKLVILIGLIFMAFG---PSYSYSLI 297

Source: Arabidopsis arenosa

Species: Arabidopsis arenosa

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806793|ref|XP_002871280.1| hypothetical protein ARALYDRAFT_325378 [Arabidopsis lyrata subsp. lyrata] gi|297317117|gb|EFH47539.1| hypothetical protein ARALYDRAFT_325378 [Arabidopsis lyrata subsp. lyrata]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/298 (71%), Positives = 243/298 (81%), Gaps = 3/298 (1%)

Query: 48  IYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITI 107
           +YAVQFHLFVTCVLFLSREGFRRAC+RA+IK DG   EEN  +LLKVAW+T+PLGI ITI
Sbjct: 3   LYAVQFHLFVTCVLFLSREGFRRACLRANIKRDGPGSEENVTRLLKVAWVTVPLGIAITI 62

Query: 108 GACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATF 167
            AC FVLWWQ LSYS+ YAQAI I+GFACVLEL+AEPLYILSQ L+ L LRL VE  ATF
Sbjct: 63  AACIFVLWWQNLSYSDTYAQAILIHGFACVLELMAEPLYILSQTLVKLELRLFVEIAATF 122

Query: 168 SRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNM 227
           +RC T+  LIV Q  MEKGIVFALSQVAY  SLFLGYW YFL+ G  ++SDLFPFR GN 
Sbjct: 123 ARCVTLWSLIVNQTNMEKGIVFALSQVAYGGSLFLGYWAYFLICGVLRSSDLFPFRPGNF 182

Query: 228 MSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFL 287
           M +D +L+NMC LFTFQSFRKL+LQEGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVF 
Sbjct: 183 MDFDNKLSNMCMLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFF 242

Query: 288 PFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFV 345
           PFEE+SY  FAR ASG Y ++ KK+G  L EALKLV+LIG+ F+      P Y ++ +
Sbjct: 243 PFEETSYTIFARFASGDYQERKKKLGIGLTEALKLVILIGLIFMAFG---PSYSYSLI 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
DICTYBASE|DDB_G0288491	540	rft1 "RFT1 family protein" [Di	0.769	0.512	0.322	6.2e-33
ZFIN|ZDB-GENE-110411-126	540	rft1 "RFT1 homolog (S. cerevis	0.855	0.570	0.306	2.9e-28
UNIPROTKB|F1P5L5	535	RFT1 "Uncharacterized protein"	0.825	0.555	0.313	2.8e-27
UNIPROTKB|E1BNC6	541	RFT1 "Uncharacterized protein"	0.827	0.550	0.292	1.3e-26
RGD|1562654	541	Rft1 "RFT1 homolog (S. cerevis	0.825	0.548	0.297	6.2e-26
UNIPROTKB|E2RQ01	541	RFT1 "Uncharacterized protein"	0.822	0.547	0.290	2.2e-25
UNIPROTKB|Q96AA3	541	RFT1 "Protein RFT1 homolog" [H	0.833	0.554	0.297	2.1e-24
UNIPROTKB|C9JP01	292	RFT1 "Protein RFT1 homolog" [H	0.452	0.558	0.3	3.4e-24
MGI|MGI:3607791	541	Rft1 "RFT1 homolog (S. cerevis	0.830	0.552	0.296	7.3e-23
POMBASE|SPBC887.19	527	rft1 "Man5GlcNac2-PP-Dol trans	0.877	0.599	0.251	1e-17

DICTYBASE|DDB_G0288491 rft1 "RFT1 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 361 (132.1 bits), Expect = 6.2e-33, P = 6.2e-33
 Identities = 96/298 (32%), Positives = 154/298 (51%)

Query:    18 YLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADI 77
             YL+  Q +SR   F+ N+ ++  + ++ + + A+Q+ L  + +LFLSRE  RRAC R +I
Sbjct:    20 YLIGLQIISRLFTFIINTLVIVGVDDSIFGVSAIQYQLLSSIILFLSREAIRRACTRVNI 79

Query:    78 KCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWW---QGLSYSNPYAQAIFINGF 134
               D  + + N   ++ ++WL LP+GI ++I    F L+    + L   N Y   + +   
Sbjct:    80 T-DKLNNDNNLKSVINLSWLVLPIGIGLSIIFENFFLYTSTKETLEILN-YHYGLRLFTI 137

Query:   135 ACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGIV-FALSQ 193
             + +LELL+EP+YIL+QN         VE  A F + F+    IV    +  G++ F  +Q
Sbjct:   138 SSILELLSEPMYILAQNLLLFKIRTTVEGFALFFKTFSTYYFIVI---LNMGLIGFGYAQ 194

Query:   194 VAYAASXXXXXXXXXXXXXXX--KTSDLFPF--------RLGNMMS--YDKQLANMCTLF 241
             + Y+ +                 K  D   F        +L    S   D+ L  +  L+
Sbjct:   195 ILYSLTLVIGYFGYFLINIINNNKNKDNKEFSNCFKSIDQLFPKFSTRIDRNLIKLSLLY 254

Query:   242 TFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 299
             T+QS  KLLLQEGEK VL + +T   QA++ +V  LGSL+VR +FLP EE+ +  F +
Sbjct:   255 TWQSIYKLLLQEGEKFVLFFSETNQGQAIFAIVSNLGSLIVRFLFLPIEETCFLMFPK 312

GO:0016021 "integral to membrane" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-110411-126 rft1 "RFT1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 320 (117.7 bits), Expect = 2.9e-28, P = 2.9e-28
 Identities = 105/343 (30%), Positives = 176/343 (51%)

Query:    11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR 70
             S S    Y +  Q + R + F+ N++ +R +++    +  V+  L  + ++FLSRE FRR
Sbjct:     9 SASTLASYNVLLQVMFRVLTFLLNAFTLRFVSKELIGVVNVRLMLLYSTLVFLSREAFRR 68

Query:    71 ACMRADIKCDGASREENAAKLLKVAWLTLPLG-IFITIGACFFVLWW--QGLSYSN-P-Y 125
             AC+  +    GA R  N  +++ + WLT PLG ++  +  C  V WW  Q     + P Y
Sbjct:    69 ACLSGE----GAGR--NWRQVINLLWLTFPLGCVWGVLLVC--VWWWVLQAPDPDSIPHY 120

Query:   126 AQAIFINGFACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEK 185
               A+ +   A + ELLAEPL++L+          + E++A  ++C    +L+V   +   
Sbjct:   121 VPAVGLFCVAALTELLAEPLWVLAHAHMFVRLKVIAESLAMIAKCLVTVVLVVSAPQW-- 178

Query:   186 GI-VFALSQVAYAASXXXXXXXXXXXXXXXKTSDL--FP-FRLGNMM--SYDKQ-LAN-- 236
             G+ +F+ +Q  Y                  + ++   FP +R+ +++    D + L N  
Sbjct:   179 GLFIFSAAQCVYTGFLLTCYVVYFIHFLGSEEAEKKSFPVYRMTDLLPSKVDHEPLLNWK 238

Query:   237 MCTL-FTF--QSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEE 291
             + TL ++F  QSF K +L EGE+ V+ +L+     +Q VY +++ LGS+V R +FLP EE
Sbjct:   239 LTTLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIINNLGSMVARFLFLPIEE 298

Query:   292 SSYATFARSAS-GQYPQKSKKIGNSLAEA-----LKLVLLIGM 328
             S Y  FA+    G+  Q  K+   S+A       LKLVLLIG+
Sbjct:   299 SFYVFFAKVLERGRDVQHQKQEEVSMAAEVLECLLKLVLLIGL 341

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

UNIPROTKB|F1P5L5 RFT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 311 (114.5 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 103/329 (31%), Positives = 158/329 (48%)

Query:    23 QFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGA 82
             Q L R + F  N+  +R+L+     + +V+  L  +  +FL+RE FRRAC+       GA
Sbjct:    17 QVLFRAVTFGLNALTLRYLSRELLGVVSVRLTLLYSTAVFLAREAFRRACLSG-----GA 71

Query:    83 SREENAAKLLKVAWLTLPLGIFIT--IGACFF-VLWWQGLSYSNPYAQAIFINGFACVLE 139
              R  + A  + + WLT+PLG+F +  +G  +  +L     S    Y   +   G + V+E
Sbjct:    72 ER--SWAATINLLWLTVPLGVFWSAFLGFVWLHLLEVPDPSVVPHYRAGVVAFGLSAVVE 129

Query:   140 LLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAAS 199
             LL EP ++L+Q         + E+++  S+C    +L+V  Y      +F+L+Q+ Y + 
Sbjct:   130 LLGEPCWVLAQAHLFVRLKVIAESLSIVSKCILTVVLVVL-YPQWGLYIFSLAQLFYTSV 188

Query:   200 XXXXXXXXXXXXXXXK--TSDLFPFR-----LGNMMSYDKQLAN-----MCTLFTFQSFR 247
                               T   FP       L N+M+ DK   N     +   F  QSF 
Sbjct:   189 LVTCYVVYFAKFLGSPEATKKSFPITRMKALLPNLMA-DKTFLNWKEARLTWSFFKQSFL 247

Query:   248 KLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSAS-GQ 304
             K +L EGE+ V+ +L+     +Q VY  V+ LGSLV R +FLP EES Y  FA+    G+
Sbjct:   248 KQILTEGERYVMTFLNVINFGDQGVYDAVNNLGSLVARFIFLPIEESFYVFFAQVLERGK 307

Query:   305 YPQKSKK-----IGNSLAEALKLVLLIGM 328
               +  K+       N L   LKLVLLIG+
Sbjct:   308 NVKDQKQDDVAMAANVLELLLKLVLLIGL 336

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BNC6 RFT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 305 (112.4 bits), Expect = 1.3e-26, P = 1.3e-26
 Identities = 98/335 (29%), Positives = 164/335 (48%)

Query:    20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKC 79
             L  Q L R I FV N++I+R L++    I  V+  L  +  +FL+RE FRRAC+      
Sbjct:    18 LLLQVLFRLITFVLNAFILRFLSKEIVGIVNVRLTLLYSTTIFLAREAFRRACL------ 71

Query:    80 DGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----YAQAIFINGF 134
              GA++ +  ++ L + WLT+PLG+F ++   +  +W Q L   +P     Y   + + GF
Sbjct:    72 SGAAQRD-WSQTLNLLWLTVPLGVFWSLFLGW--VWLQLLEVPDPHVVPHYGTGVVVFGF 128

Query:   135 ACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGI-VFALSQ 193
             + V+ELL EP ++L+Q         + E+++   +     +L++  +    G+ +F+L+Q
Sbjct:   129 SAVVELLGEPFWVLAQAHMFVKLKVIAESLSVILKSVLTALLVL--WLPHWGLYIFSLAQ 186

Query:   194 VAY------------AASXXXXXXXXXXXXXXXKTSDLFPFRLGNMMSYDKQLANMCTLF 241
             + Y            A                 + +DL P    +    + + A +   F
Sbjct:   187 LFYTTLLVLCYVIYFAKVLGSPESAKQQALPVSRMTDLLPSMTRSRAFVNWEEAKLTWSF 246

Query:   242 TFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 299
               QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES Y  FA+
Sbjct:   247 FKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLLFQPIEESFYIFFAK 306

Query:   300 SASGQYP---QKSKKIGNS---LAEALKLVLLIGM 328
                 +     QK + +  +   L   LKL LL G+
Sbjct:   307 VLEREKDATLQKQEDVAVAAVVLESLLKLALLTGL 341

GO:0016021 "integral to membrane" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

RGD|1562654 Rft1 "RFT1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 299 (110.3 bits), Expect = 6.2e-26, P = 6.2e-26
 Identities = 100/336 (29%), Positives = 159/336 (47%)

Query:    20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKC 79
             L  Q L R I FV N++I+R L++    +  V+  L  +  +FL+RE FRRAC+      
Sbjct:    18 LLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTIFLAREAFRRACLSG---- 73

Query:    80 DGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----YAQAIFINGF 134
              G  R+    + L + WLT+PLGIF ++  C   +W Q L   +P     Y   + + G 
Sbjct:    74 -GTQRDWT--QTLNLLWLTVPLGIFWSL--CLGWVWLQLLEVPDPNVVPYYGTGVLLFGL 128

Query:   135 ACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGI-VFALSQ 193
             + V+ELL EP ++L+Q         + E+++   R     +L++  +    G+ +F+L+Q
Sbjct:   129 SAVVELLGEPFWVLAQAHMFVKLKVLAESMSVILRSVLTALLVL--WLPHWGLYIFSLAQ 186

Query:   194 VAYAASXX------------XXXXXXXXXXXXXKTSDLFPFRLGNMMSYDKQLANMCTLF 241
             + Y A                            K + L P         +   A +   F
Sbjct:   187 LLYTAVLVLCYMLYLIKLLRSPESSKQLTLPISKVTQLLPSISRRKAFVNWNEARLTWSF 246

Query:   242 TFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 299
               QSF K +L EGE+ V+ +L+     +Q +Y +V+ LGSLV R++F P EES Y  FA+
Sbjct:   247 FKQSFLKQILTEGERYVMTFLNVLNFGDQGIYDIVNNLGSLVARLIFQPVEESFYIFFAK 306

Query:   300 ------SASGQYPQKSKKIGNSLAEAL-KLVLLIGM 328
                    AS Q  Q    +  ++ E+L KL LL G+
Sbjct:   307 VLEREKDASLQ-KQDDVAVAAAVLESLLKLALLTGL 341

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RQ01 RFT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 294 (108.6 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 98/337 (29%), Positives = 163/337 (48%)

Query:    20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKC 79
             L  Q L R I FV N++I+R L++    I  V+  L  +  +FL+RE FRRAC+      
Sbjct:    18 LLLQVLFRLITFVLNAFILRFLSKEIVGIVNVRLTLLYSTTIFLAREAFRRACLSG---- 73

Query:    80 DGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----YAQAIFINGF 134
              GA R+ +  +   + WLT+PLG+F ++   +  +W   L   +P     Y   + + G 
Sbjct:    74 -GAQRDWS--QTFNLLWLTVPLGVFWSLLLGW--VWLHLLEVPDPNVVPHYGTGVVVFGL 128

Query:   135 ACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGI-VFALSQ 193
             + V+ELL EP ++L+Q         + E+++   +      L++  +    G+ +F+L+Q
Sbjct:   129 SAVVELLGEPFWVLAQTQMFVKLKVIAESLSVILKSVLTAFLVL--WLPHWGLYIFSLAQ 186

Query:   194 VAYAASXX------------XXXXXXXXXXXXXKTSDLFPF--RLGNMMSYDKQLANMCT 239
             + Y A                            + +DL P   R G  +++ +  A +  
Sbjct:   187 LFYTALLVLCYVTYFTKLLGSSESTKQRALPVSRMTDLLPSITRSGAFVNWKE--AKLTW 244

Query:   240 LFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATF 297
              F  QSF K +L EGE+ ++ +L+     +Q VY +V+ LGSLV R++F P EES Y  F
Sbjct:   245 SFFKQSFLKQILTEGERYIMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPIEESFYIFF 304

Query:   298 ARSAS-GQYP--QKSKKIGNSLA---EALKLVLLIGM 328
             A+    G+    QK + +  + A     LKL LL G+
Sbjct:   305 AKVLERGKDATLQKQEDVAVAAAVLESLLKLALLAGL 341

GO:0016021 "integral to membrane" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

UNIPROTKB|Q96AA3 RFT1 "Protein RFT1 homolog" [Homo sapiens (taxid:9606)]

 Score = 285 (105.4 bits), Expect = 2.1e-24, P = 2.1e-24
 Identities = 99/333 (29%), Positives = 161/333 (48%)

Query:    20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKC 79
             L  Q L R I FV N++I+R L++    +  V+  L  +  LFL+RE FRRAC+      
Sbjct:    18 LLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTLFLAREAFRRACLSG---- 73

Query:    80 DGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSN--P-YAQAIFINGFAC 136
              G  R+ +  + L + WLT+PLG+F ++   +  L    +   N  P YA  + + G + 
Sbjct:    74 -GTQRDWS--QTLNLLWLTVPLGVFWSLFLGWIWLQLLEVPDPNVVPHYATGVVLFGLSA 130

Query:   137 VLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGI-VFALSQVA 195
             V+ELL EP ++L+Q         + E+++   +      L++  +    G+ +F+L+Q+ 
Sbjct:   131 VVELLGEPFWVLAQAHMFVKLKVIAESLSVILKSVLTAFLVL--WLPHWGLYIFSLAQLF 188

Query:   196 YAASXX------------XXXXXXXXXXXXXKTSDLFPFRLGNMMSYDKQLANMCTLFTF 243
             Y                              + +DL P    N    + + A +   F  
Sbjct:   189 YTTVLVLCYVIYFTKLLGSPESTKLQTLPVSRITDLLPNITRNGAFINWKEAKLTWSFFK 248

Query:   244 QSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSA 301
             QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES Y  FA+  
Sbjct:   249 QSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPIEESFYIFFAKVL 308

Query:   302 S-GQYP--QKSKKIGNSLA--EAL-KLVLLIGM 328
               G+    QK + +  + A  E+L KL LL G+
Sbjct:   309 ERGKDATLQKQEDVAVAAAVLESLLKLALLAGL 341

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006488 "dolichol-linked oligosaccharide biosynthetic process" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|C9JP01 RFT1 "Protein RFT1 homolog" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
 Identities = 54/180 (30%), Positives = 94/180 (52%)

Query:    20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKC 79
             L  Q L R I FV N++I+R L++    +  V+  L  +  LFL+RE FRRAC+      
Sbjct:    18 LLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTLFLAREAFRRACLSG---- 73

Query:    80 DGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----YAQAIFINGF 134
              G  R+ +  + L + WLT+PLG+F ++   +  +W Q L   +P     YA  + + G 
Sbjct:    74 -GTQRDWS--QTLNLLWLTVPLGVFWSLFLGW--IWLQLLEVPDPNVVPHYATGVVLFGL 128

Query:   135 ACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGI-VFALSQ 193
             + V+ELL EP ++L+Q         + E+++   +      L++  +    G+ +F+L+Q
Sbjct:   129 SAVVELLGEPFWVLAQAHMFVKLKVIAESLSVILKSVLTAFLVL--WLPHWGLYIFSLAQ 186

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:3607791 Rft1 "RFT1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 271 (100.5 bits), Expect = 7.3e-23, P = 7.3e-23
 Identities = 99/334 (29%), Positives = 157/334 (47%)

Query:    20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKC 79
             L  Q L R I FV N++I+R L++    I  V+  L  +   FL+RE FRRAC+      
Sbjct:    18 LLLQVLFRLITFVLNAFILRFLSKEIVGIVNVRLTLLYSTTTFLAREAFRRACLSG---- 73

Query:    80 DGASREENAAKLLKVAWLTLPLGIFIT--IGACFFVLWWQGLSYSNPY-AQAIFINGFAC 136
              GA R+ +  + L + WLT+PLGIF +  +G  +  L         PY    +   G + 
Sbjct:    74 -GAQRDWS--QTLNLLWLTVPLGIFWSSCLGWVWLQLLEVPDPDVVPYYGTGVLFFGLSA 130

Query:   137 VLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGI-VFALSQVA 195
             V+ELL EP ++L+Q         + E+++   R     +L++  +    G+ +F+L+Q+ 
Sbjct:   131 VVELLGEPFWVLAQAHMFVKLKVLAESMSVILRSVLTALLVL--WLPHWGLYIFSLAQLL 188

Query:   196 YAASXX------------XXXXXXXXXXXXXKTSDLFPFRLGNMMSYDKQLANMCTLFTF 243
             Y                              + + L P    +    + + A +   F  
Sbjct:   189 YTTVLVLCYAIYLIQLLRSPESAKQLTLPVSRVTQLLPSISRSRAFVNWKEAGLAWSFFK 248

Query:   244 QSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR-- 299
             QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES Y  FA+  
Sbjct:   249 QSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPVEESFYLFFAKVL 308

Query:   300 ----SASGQYPQKSKKIGNSLAEAL-KLVLLIGM 328
                  AS Q  Q    +  ++ E+L KL LL G+
Sbjct:   309 EREKDASLQ-KQDDVAVAAAVLESLLKLALLTGL 341

GO:0003674 "molecular_function" evidence=ND

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

POMBASE|SPBC887.19 rft1 "Man5GlcNac2-PP-Dol translocation protein Rft1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 235 (87.8 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 84/334 (25%), Positives = 143/334 (42%)

Query:    11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR 70
             S S+  +  +  Q  SR + F  N   +R  + + YA  ++ F +  + +LFLSRE  R 
Sbjct:    10 SSSKGLRSSIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTILFLSRESVRL 69

Query:    71 ACMRADIK---CDGASREENAAKLL----KVAWLTLPLGIFITIGACFFVLWWQGLSYSN 123
             A  R   +       S E N +K L    ++   T  + ++I I     V  +   S  N
Sbjct:    70 AMQRIPSENAIITSTSTESNKSKKLSDQLQLIKNTSLISVYIGIVISLLVSLFYFYSLPN 129

Query:   124 -PYAQA-IFINGFACVLELLAEPLYILSQNXXXXXXXXVVETVATF-SRCFTMCILIVKQ 180
              PY++  IFI   +  +ELL+EP Y + Q           E + T      +  I ++ +
Sbjct:   130 FPYSKTCIFIYTVSSFIELLSEPYYEVLQWRQKFSKTASAEGLGTIICSLLSFAISVLGR 189

Query:   181 YEMEKGIVFALSQVAYAASXXXXXXXXXXXXXXXKTSDLFPFRLGNMMSY---DKQLANM 237
              +    + FAL  ++   +               +   +F  ++G    Y   D     +
Sbjct:   190 NKAPSSLPFALGNLSEKVTIFFTLRYFAK-----QPFSIFLHKVGENERYIFWDSSTLRI 244

Query:   238 CTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATF 297
                 T+Q   K L+ +G+K+++ W  +P  Q  Y L    GSL+ R+VF P E+ S+  F
Sbjct:   245 ICSHTYQVLLKHLITKGDKIMVAWYASPSAQGPYALASNYGSLLARIVFRPVEDHSHIVF 304

Query:   298 ARSASGQYPQKSKKIGNSLAEALKLVLLIGMFFI 331
             A+    +  +  KK  N LA  LKL   + +F +
Sbjct:   305 AQLTHYKNKKDEKKALNLLAWILKLYSYMSLFIL 338

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034203 "glycolipid translocation" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.29.62.1 hypothetical protein (474 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	360
cd13130	441	cd13130, MATE_rft1, Rft1-like subfamily of the mul	1e-137
pfam04506	533	pfam04506, Rft-1, Rft protein	9e-29

>gnl|CDD|240535 cd13130, MATE_rft1, Rft1-like subfamily of the multidrug and toxic compound extrusion family (MATE)

 Score =  398 bits (1024), Expect = e-137
 Identities = 192/328 (58%), Positives = 220/328 (67%), Gaps = 8/328 (2%)

Query: 11  SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR 70
           S SR FKYL+A Q  SR I FVFN  ++R LT   +  Y++QF LF T VLFLSREGFRR
Sbjct: 1   SSSRGFKYLIAAQLFSRIITFVFNQLLLRFLTPRYFG-YSIQFELFQTTVLFLSREGFRR 59

Query: 71  ACMRADIKCDG-----ASREENAAKLLKVAWLTLPLGIFITIGACFFVLW-WQGLSYSNP 124
           AC+R +    G         E  AK+LK+AW  +P GI  TI  C  VLW  + LSYS P
Sbjct: 60  ACLRINSSGAGITTESNKSGELQAKVLKIAWAIVPGGIISTILGCLVVLWASESLSYSPP 119

Query: 125 YAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEME 184
           YA+AI I GFAC+LELL+EPLYILSQNLL  RLR +VET AT  RC T  ILIV     E
Sbjct: 120 YAKAILIYGFACILELLSEPLYILSQNLLKFRLRAIVETAATLVRCLTTFILIVLGTGKE 179

Query: 185 -KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTF 243
            K +VFAL Q+AY   LF GYW YFL     K S LFP R  N+M +DK    MC LFT 
Sbjct: 180 PKVLVFALGQLAYGVCLFFGYWYYFLQCFVSKKSSLFPLRNSNLMFFDKPTLRMCGLFTI 239

Query: 244 QSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASG 303
           QSF K LL EG+K+VLVW DTPYNQ VY LVD  GSLVVR+VFLPFEESSY TFAR AS 
Sbjct: 240 QSFFKHLLTEGDKIVLVWFDTPYNQGVYALVDNYGSLVVRIVFLPFEESSYTTFARLASE 299

Query: 304 QYPQKSKKIGNSLAEALKLVLLIGMFFI 331
           + P+  KK+GNSL EALKL   +G+  I
Sbjct: 300 KNPKALKKLGNSLTEALKLYSYVGLVAI 327

This eukaryotic family may function as a transporter, shuttling phospholipids, lipopolysaccharides or oligosaccharides from cytoplasmic to the lumenal side of the endoplasmic reticulum. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. Length = 441

>gnl|CDD|218119 pfam04506, Rft-1, Rft protein

 Score =  116 bits (292), Expect = 9e-29
 Identities = 94/352 (26%), Positives = 147/352 (41%), Gaps = 39/352 (11%)

Query: 11  SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR 70
           S      + +  Q ++R + F  N +++R ++     I  V+  L  + +LFLSRE  R 
Sbjct: 2   SSFSGLVFSIRGQLIARILTFAINMYLIRRISPDVLGIVNVRLELLQSTILFLSREAIRL 61

Query: 71  ACMRADIKCDGASREENAAKLLKVAWLTLPLGIFIT----------IGACFFVLW--WQG 118
           A +R          +++  + + + WL+  +   I           I     + W     
Sbjct: 62  AELRIG---SLPIDDDDEEEFINLLWLSPIIQTVINVVCVYIWYAWISTVDSISWSVLLF 118

Query: 119 LSYSN---PYAQ-AIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMC 174
              S    P A+  IFI+  +  +ELL EP +I+ Q +L+   R+ VE+ A         
Sbjct: 119 FPISAIIEPIAEPFIFISLVSEFVELLLEPHFIVGQGMLICVKRIFVESGAFMFPGIYHL 178

Query: 175 ILIVK-QYEMEKGIV---FALSQVA-YAASLFLGYWGYFLLFGAFKTSDLFP--FRLGNM 227
            L V  QY  +K I    FAL  +A    +  +     F  F     SD  P        
Sbjct: 179 ELFVYAQYIRKKAIAYLLFALGALAIKITNKSIYELEQFSPF-----SDFLPKVSENKKS 233

Query: 228 MSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVW--LDTPYNQAVYGLVDKLGSLVVRMV 285
             +D+   +       QS  K LL EG+K V+ +  L +   QAVY LV   GSL+ R +
Sbjct: 234 YFFDRDSLHAVFSMFSQSILKQLLTEGDKYVMTFTELLSLKEQAVYDLVSNYGSLLARTI 293

Query: 286 FLPFEESSYATFARSASG------QYPQKSKKIGNSLAEALKLVLLIGMFFI 331
           F P EESS A FA++ S       +     K   + L+  L +V  IG+  I
Sbjct: 294 FRPIEESSNAYFAQTLSKENKKFNKNTDNHKDAVDVLSNLLHVVSYIGLVAI 345

Length = 533

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	100.0
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	100.0
PRK10459	492	colanic acid exporter; Provisional	99.96
COG2244	480	RfbX Membrane protein involved in the export of O-	99.81
PRK15099	416	O-antigen translocase; Provisional	99.77
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.77
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	99.74
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.7
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	99.7
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.24
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	98.66
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	98.47
PRK01766	456	multidrug efflux protein; Reviewed	98.46
PRK00187	464	multidrug efflux protein NorA; Provisional	98.42
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	98.0
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	97.93
PRK10189	478	MATE family multidrug exporter; Provisional	97.44
COG0728	518	MviN Uncharacterized membrane protein, putative vi	97.12
PRK10459	492	colanic acid exporter; Provisional	95.07
COG2244	480	RfbX Membrane protein involved in the export of O-	94.74
PRK15099	416	O-antigen translocase; Provisional	94.53
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	93.99
PRK01766	456	multidrug efflux protein; Reviewed	93.73
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	91.9
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	91.66
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	91.65
PRK10189	478	MATE family multidrug exporter; Provisional	89.63
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	89.57
TIGR01695	502	mviN integral membrane protein MviN. This model re	87.8
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	86.07
PRK00187	464	multidrug efflux protein NorA; Provisional	84.6
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	81.03

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.1e-71  Score=536.77  Aligned_cols=345  Identities=35%  Similarity=0.513  Sum_probs=314.9

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccchh
Q 018169            7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREE   86 (360)
Q Consensus         7 ~~~~~~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~lr~~~~~~~~~~~~   86 (360)
                      ++-.+..+|+..++.+|+.+|++||++|++++|+++||++|++++++|++++|++|+|||++|+|++|.++..+|     
T Consensus         5 ~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~~d-----   79 (530)
T KOG2864|consen    5 SVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEPAD-----   79 (530)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCc-----
Confidence            344567899999999999999999999999999999999999999999999999999999999999998776643     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cCCchhhHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHHHH
Q 018169           87 NAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLS----YSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVE  162 (360)
Q Consensus        87 ~~~~~~n~awl~i~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~~E  162 (360)
                      +|.+..|+.|++.|++..+++.++.+|++|....    +.++|..++.++++|+++|+++||+++++|..+.++.|+.+|
T Consensus        80 ~~te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e  159 (530)
T KOG2864|consen   80 TWTEFINLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAE  159 (530)
T ss_pred             cHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh
Confidence            6888999999999999999999888888776332    556678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH-HHHhhc-------ccccCccCCCcccC--cccccH
Q 018169          163 TVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWG-YFLLFG-------AFKTSDLFPFRLGN--MMSYDK  232 (360)
Q Consensus       163 ~~a~~~~~~~~v~l~~~~~~~~a~~~fa~gql~~s~~~~~~y~~-~~~~~~-------~~~~~~~~P~r~~~--~~~~~~  232 (360)
                      +.+.++||++.++..+..++.|++.+||+||++|+++++++|.. |+...+       ..+.++++|+..++  ...||+
T Consensus       160 ~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~  239 (530)
T KOG2864|consen  160 GLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFDN  239 (530)
T ss_pred             HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccccH
Confidence            99999999999999999999899999999999999999886644 444443       23456899998766  678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhceeeeEecc--CCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhh
Q 018169          233 QLANMCTLFTFQSFRKLLLQEGEKLVLVWLD--TPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  310 (360)
Q Consensus       233 ~ll~~~~~~~~qsi~k~lltegDk~vl~~~~--~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~  310 (360)
                      |+.++.+.++.|+++||++|||||++|+...  +..|||+|++++||||+++|++|+||||++|.+|+|..+.+++|+.+
T Consensus       240 d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k  319 (530)
T KOG2864|consen  240 DLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVK  319 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHH
Confidence            9999999999999999999999999999665  67799999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHhcCCcCccchh
Q 018169          311 KIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVVKGICLTISVI  356 (360)
Q Consensus       311 ~~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~llG~kW~~~~~~  356 (360)
                      ++.+++.+++|++.++|+++++|||+||+.++++..|+||.+++.-
T Consensus       320 ~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~  365 (530)
T KOG2864|consen  320 KAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGS  365 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCch
Confidence            9999999999999999999999999999999999999999998753

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=100.00  E-value=2.4e-70  Score=560.16  Aligned_cols=342  Identities=34%  Similarity=0.543  Sum_probs=288.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccchhhHHHH
Q 018169           12 LSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKL   91 (360)
Q Consensus        12 ~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~lr~~~~~~~~~~~~~~~~~   91 (360)
                      -.+|++++++.|+++|++||++|++++|+++||+||++++++|++++|++|+||||+|+||+|+++++   .++.+|++.
T Consensus         3 s~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~---~~~~~~~~~   79 (549)
T PF04506_consen    3 SAKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSS---IDKSNWAQS   79 (549)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---cCcccHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999999998776   223356778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------------Hhhccc-----cCCch-hhHHHHHHHHHHHHhhhhhHHHHHHHhH
Q 018169           92 LKVAWLTLPLGIFITIGACFFVL------------WWQGLS-----YSNPY-AQAIFINGFACVLELLAEPLYILSQNLL  153 (360)
Q Consensus        92 ~n~awl~i~~g~~~~~~~~~~~~------------~~~~~~-----~~~~~-~~~~~~~~ls~iie~l~eP~~~~~qr~l  153 (360)
                      .|..|.+.|++.+++..++.+++            .|....     ..+|| ..++.++++++++|+++||+|++.|.++
T Consensus        80 ~n~~wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l  159 (549)
T PF04506_consen   80 INLLWLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQML  159 (549)
T ss_pred             hhcccccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            88888877777666653333322            111111     12466 4789999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhc--cC-----------chhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccC
Q 018169          154 LLRLRLVVETVATFSRCFTMCILIVKQ--YE-----------MEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLF  220 (360)
Q Consensus       154 ~~~~r~~~E~~a~~~~~~~~v~l~~~~--~~-----------~~a~~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~  220 (360)
                      +++.|+++|+.+.++||+++++++++.  .+           ..++++|+.||++|+++.+.+|..... ...++.++.+
T Consensus       160 ~~~~Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~-~~~~~~s~~l  238 (549)
T PF04506_consen  160 FFKLRVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYF-FPFKSFSDLL  238 (549)
T ss_pred             hhheeeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhcc-Ccccchhhcc
Confidence            999999999999999999999987554  11           135689999999999988877754322 1122334566


Q ss_pred             CCccc---CcccccHHHHHHHHHHHHHHHHHHHHhhhceeeeEe--ccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHH
Q 018169          221 PFRLG---NMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVW--LDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYA  295 (360)
Q Consensus       221 P~r~~---~~~~~~~~ll~~~~~~~~qsi~k~lltegDk~vl~~--~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~  295 (360)
                      |+...   +...+|++++++.+.++.||++||+||||||++|+.  ++|++|||+|++++|||||+||++||||||++|.
T Consensus       239 p~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~  318 (549)
T PF04506_consen  239 PKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRL  318 (549)
T ss_pred             ccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHH
Confidence            65433   356799999999999999999999999999999999  9999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCchh------hhHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHhcCCcCccchhc
Q 018169          296 TFARSASGQYPQK------SKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVVKGICLTISVIG  357 (360)
Q Consensus       296 ~Fs~~~~~~~~~~------~~~~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~llG~kW~~~~~~~  357 (360)
                      +|||+.+++++++      .++..+++..++|.+.++|+++++|||+||+.++++++|+||.++++..
T Consensus       319 ~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~  386 (549)
T PF04506_consen  319 YFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPS  386 (549)
T ss_pred             HHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchH
Confidence            9999988754433      3567789999999999999999999999999999999999999988743

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>PRK10459 colanic acid exporter; Provisional

Probab=99.96  E-value=1.3e-26  Score=235.69  Aligned_cols=322  Identities=12%  Similarity=0.067  Sum_probs=244.1

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccchh
Q 018169            7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREE   86 (360)
Q Consensus         7 ~~~~~~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~lr~~~~~~~~~~~~   86 (360)
                      |+++|+.+|+.|+.+.++.+++++|+.+.+++|+|+||+||+++....++ +....+++.|+..+++|.+++++      
T Consensus         2 ~~~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~-~~~~~~~~~Gl~~aii~~~~~~~------   74 (492)
T PRK10459          2 SLREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVII-GFADTLSDMGIGASIIQRQDISH------   74 (492)
T ss_pred             ChHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHH-HHHHHHHHcCHHHHHHhcccCCH------
Confidence            57889999999999999999999999999999999999999999876643 34456788899999998644321      


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCch-hhHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHHHHHHH
Q 018169           87 NAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA  165 (360)
Q Consensus        87 ~~~~~~n~awl~i~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~~E~~a  165 (360)
                        ++.-+..|+++..|+++.++.... ..+....+++|. ...+.+.++...+..+.+.+....||+++++.....|...
T Consensus        75 --~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~  151 (492)
T PRK10459         75 --LQLSTLYWLNVGLGIVVFVLVFLL-SPLIADFYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISA  151 (492)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHH
Confidence              112233455666666555443322 222233345554 4566777888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCcccCcccccHHHHHHHHHHHHHH
Q 018169          166 TFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQS  245 (360)
Q Consensus       166 ~~~~~~~~v~l~~~~~~~~a~~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~~~~~~~~~~ll~~~~~~~~qs  245 (360)
                      .+...++++.++....   +.+++++++++.++...+.++....       +..-|+.. .+....|++++++.+.+..+
T Consensus       152 ~i~~~~~~i~~~~~~~---g~~~l~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~-~~~~~~k~ll~~~~~~~~~~  220 (492)
T PRK10459        152 VVAGFTFAVVSAFFWP---GALAAILGYLVNSSVRTLLFGYFGR-------KIYRPALH-FSLASVKPNLSFGAWQTAER  220 (492)
T ss_pred             HHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHHHHHHHHHHhc-------ccCCccce-ecHHHHHHHHhhhHHHHHHH
Confidence            9998888877665533   4566777888776544333322111       01112211 11122389999999999999


Q ss_pred             HHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHH
Q 018169          246 FRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLL  325 (360)
Q Consensus       246 i~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~~~~~~l~~~L~~~~~  325 (360)
                      +..++.++.|++++|.+.++++.|.|+.+.++.+++...+..++....+|.+|+..+     |.++.++.+.+.++....
T Consensus       221 ~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~~-----~~~~~~~~~~~~~~~~~~  295 (492)
T PRK10459        221 IINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQD-----DTEKLRVGFLKLLSVLGI  295 (492)
T ss_pred             HHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcC-----CHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998888899999999999632     234677788888888888


Q ss_pred             HHHHHHHhcccChHHHHHHHhcCCcCccc
Q 018169          326 IGMFFIELKFSLPIYEFNFVVKGICLTIS  354 (360)
Q Consensus       326 lgl~~~~~G~~~s~~ll~~llG~kW~~~~  354 (360)
                      +++++.......+++++++++|++|.+..
T Consensus       296 ~~~p~~~~l~~~a~~ii~ll~g~~~~~a~  324 (492)
T PRK10459        296 INFPLLLGLMVVSNNFVPLVFGEKWNSAI  324 (492)
T ss_pred             HHHHHHHHHHHHhHHHHHHhcChhHHhHH
Confidence            88887766666999999999999997644

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.81  E-value=7.3e-18  Score=170.81  Aligned_cols=326  Identities=14%  Similarity=0.074  Sum_probs=220.0

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccchh
Q 018169            7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREE   86 (360)
Q Consensus         7 ~~~~~~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~lr~~~~~~~~~~~~   86 (360)
                      +..++..|++.|+...++.+++++|+...+++|.++||+||+++....+.... .-+++-|+..++.|.-...++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~-~~i~~~G~~~ai~r~ia~~~~~~~~~   81 (480)
T COG2244           3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLF-SILADFGLPAAITREIAEYREKGEYL   81 (480)
T ss_pred             hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHH-HHHHHcCCcHHHHHHHHHhhcccHHH
Confidence            34567899999999999999999999999999999999999999987754443 45567799999999655443322222


Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHHHHHHH
Q 018169           87 NAAKL-LKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA  165 (360)
Q Consensus        87 ~~~~~-~n~awl~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~~E~~a  165 (360)
                      ..... ....   +...+....+.... ...... ..+.+...+.+.+++..+...........|+..+++..+......
T Consensus        82 ~~~~~~~~~~---l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (480)
T COG2244          82 LLILLSVLLL---LLLALILLLLLLLI-AYLLAP-IDPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS  156 (480)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHH-HHHhcc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Confidence            21111 1111   11111111111111 111111 112235667778888888888888889999998888877773333


Q ss_pred             -HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCcc-cCcccccHHHHHHHHHHHH
Q 018169          166 -TFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRL-GNMMSYDKQLANMCTLFTF  243 (360)
Q Consensus       166 -~~~~~~~~v~l~~~~~~~~a~~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~-~~~~~~~~~ll~~~~~~~~  243 (360)
                       .+......+.   ......+.++...+.+.........+...  .       ...++.. +.....-+++++++.++..
T Consensus       157 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~l~~~~p~~~  224 (480)
T COG2244         157 IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKK--K-------RGLKRPILRFSLALLKELLRFGLPLLL  224 (480)
T ss_pred             HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHh--h-------hhccccccCchhHHHHHHHHHhhHHHH
Confidence             1222222111   11111344555566665432222222101  0       0011111 0012344899999999999


Q ss_pred             HHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhhHHHHHHHHHHHHH
Q 018169          244 QSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLV  323 (360)
Q Consensus       244 qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~~~~~~l~~~L~~~  323 (360)
                      .++...+.++.|+++++.+.++++.|.|+ +.+.-..+...+..|+....+|..|+..++++.   ++.++.+...++..
T Consensus       225 ~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~-~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~---~~~~~~~~~~~~~~  300 (480)
T COG2244         225 SSLLNFLFTNIDTLLLGLFLGPAQVGIYS-AAQRLVSLLLIVASALNRVLFPALSRAYAEGDR---KALKKLLRQSLKLL  300 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHheecc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH---HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 777777778999999999999999999887533   35556777788888


Q ss_pred             HHHHHHHHHhcccChHHHHHHHhcCCcCccc
Q 018169          324 LLIGMFFIELKFSLPIYEFNFVVKGICLTIS  354 (360)
Q Consensus       324 ~~lgl~~~~~G~~~s~~ll~~llG~kW~~~~  354 (360)
                      ..++.+++..-...+++++.+++|++|.+..
T Consensus       301 ~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~~  331 (480)
T COG2244         301 LLISIPALLGLLLLAPPIITLLFGEKYASAA  331 (480)
T ss_pred             HHHHHHHHHHHHHHHhhhheeecCCcccchh
Confidence            8888888877777899999999999998643

>PRK15099 O-antigen translocase; Provisional

Probab=99.77  E-value=2.1e-16  Score=157.81  Aligned_cols=320  Identities=10%  Similarity=0.026  Sum_probs=201.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccchhhHHH
Q 018169           11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAK   90 (360)
Q Consensus        11 ~~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~lr~~~~~~~~~~~~~~~~   90 (360)
                      +..|++.|+...+++..+++|+.+-+++|+++||++|+++....++... ..+..-|+-.+..|.-...  .+|+++.++
T Consensus         2 ~~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~-~~~~~~G~~~a~~~~ia~~--~~~~~~~~~   78 (416)
T PRK15099          2 SLAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVL-GVLAGAGIFNGVTKYVAQY--HDQPQQLRA   78 (416)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHH-HHHHcCCccceeeeeHHhc--CCCHHHHHH
Confidence            4678999999999999999999999999999999999988765544333 3343446644442211111  122234455


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHhhc-cccC-CchhhHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHHHHHHHHH
Q 018169           91 LLKVAW-LTLPLGIFITIGACFFVLWWQG-LSYS-NPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATF  167 (360)
Q Consensus        91 ~~n~aw-l~i~~g~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~~E~~a~~  167 (360)
                      +.+++. +++..|++++++.... ..+.. .... +++...+...+...+.-.+.+......+..    .+.+.+....+
T Consensus        79 ~~~~~~~l~~~~~~i~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~----~~~~~~~~~~~  153 (416)
T PRK15099         79 VVGTSSAMVLGFSTLLALVFLLA-AAPISQGLFGHTDYQGVVRAVALIQMGIAWANLLLAILKGF----RDAAGNALSLI  153 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            666654 4666666666554332 11211 1122 334444444444444444444443444443    33444444445


Q ss_pred             HHHHHHHHH---HHhccCch-hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCc---ccCcccccHHHHHHHHH
Q 018169          168 SRCFTMCIL---IVKQYEME-KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFR---LGNMMSYDKQLANMCTL  240 (360)
Q Consensus       168 ~~~~~~v~l---~~~~~~~~-a~~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r---~~~~~~~~~~ll~~~~~  240 (360)
                      ...++.+.+   .+...+.+ +.++..++|....+.  ..|+.+ ++      +. +|.+   .+.+....|++++++.+
T Consensus       154 ~~~~~~i~l~i~~~~~~Gv~Ga~iat~i~~~i~~~~--~~~~~~-~~------~~-~~~~~~~~~~~~~~~k~ll~~g~p  223 (416)
T PRK15099        154 VGSLIGVAAYYLCYRLGGYEGALLGLALVPALVVLP--AGIMLI-RR------GT-IPLSYLKPSWDNGLAGQLGKFTLM  223 (416)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH--HHHHHH-Hc------cc-eehHhhhccCCHHHHHHHHHHHHH
Confidence            555544432   22222444 335666666554211  122221 11      01 1211   11122234799999999


Q ss_pred             HHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhhHHHHHHHHHH
Q 018169          241 FTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEAL  320 (360)
Q Consensus       241 ~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~~~~~~l~~~L  320 (360)
                      ...+++...+.+-.|+.+++...+.++.|.|+++.++.+.+...+..|+.++.+|..++.. +  +   ++.++.+.+.+
T Consensus       224 ~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~~-~--~---~~~~~~~~~~~  297 (416)
T PRK15099        224 ALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLT-E--K---RDITREIVKAL  297 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--h---HHHHHHHHHHH
Confidence            9999999999999999999988889999999999999999999999999999999999951 1  1   34555555566


Q ss_pred             HHHHHHHHHHHHhcccChHHHHHHHhcCCcCccc
Q 018169          321 KLVLLIGMFFIELKFSLPIYEFNFVVKGICLTIS  354 (360)
Q Consensus       321 ~~~~~lgl~~~~~G~~~s~~ll~~llG~kW~~~~  354 (360)
                      +....++++........+|+++++++|++|.+.+
T Consensus       298 ~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~~~  331 (416)
T PRK15099        298 KFVLPAVAAASFTVWLLRDFAIWLLFSNKFTAMR  331 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            6666666655554445799999999999998644

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.77  E-value=2.4e-16  Score=159.67  Aligned_cols=329  Identities=15%  Similarity=0.113  Sum_probs=213.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccchhhHHHHH
Q 018169           13 SRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLL   92 (360)
Q Consensus        13 ~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~lr~~~~~~~~~~~~~~~~~~   92 (360)
                      .|++.|++..+++.++++|+.+.+++|.++||+||.+++...+.... ..+...|+-.++.|.-....+.+|++..++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~-~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~   80 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLF-ITLTTGGLPVAISKFVAEASAKNDRKNIKKIL   80 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHH-HHHHhCCcHHHHHHHHHHHHhccchhhHHHHH
Confidence            47889999999999999999999999999999999999876654433 33455588888877421111111212233444


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHhhcc-ccCCch-hhHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHHHHHHHHHHH
Q 018169           93 K-VAWLTLPLGIFITIGACFFVLWWQGL-SYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSR  169 (360)
Q Consensus        93 n-~awl~i~~g~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~~E~~a~~~~  169 (360)
                      . ..|+++..|+++++++... ..+... ..+++. ...+..++.+.++..+.+......|.+.+++.....+....+.+
T Consensus        81 ~~~~~l~l~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i~~  159 (488)
T TIGR02900        81 KVSLIFTLIWSLIVTAIVFLL-SPFIASTLLKDERSLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVR  159 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-hHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHHHH
Confidence            4 4455666666555443222 111111 123443 23456677888888889998899999999999999999999998


Q ss_pred             HHHHHHHHHhc--cCch-hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCcccCcccccHHHHHHHHHHHHHHH
Q 018169          170 CFTMCILIVKQ--YEME-KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSF  246 (360)
Q Consensus       170 ~~~~v~l~~~~--~~~~-a~~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~~~~~~~~~~ll~~~~~~~~qsi  246 (360)
                      ....+.+....  .+.| .+.+.+++.....+...+..+.++.+....+.+.....+.+.+....|++++++.+.+.+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~  239 (488)
T TIGR02900       160 ISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRF  239 (488)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHH
Confidence            87766554322  2222 23333344333322222211111111110000000000000111234799999999999999


Q ss_pred             HHHHHhhhceeeeEeccCC---------Ccchhh-hHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhhHHHHHH
Q 018169          247 RKLLLQEGEKLVLVWLDTP---------YNQAVY-GLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSL  316 (360)
Q Consensus       247 ~k~lltegDk~vl~~~~~~---------~~qG~Y-~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~~~~~~l  316 (360)
                      ..++.++.|++++++..+.         ++.|.| +++.++..++ -.+...+..+..|.+++..++++.   ++.++.+
T Consensus       240 ~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~~s~~~~~~~~---~~~~~~~  315 (488)
T TIGR02900       240 IGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPDISEAMAKKNY---SSIEKRI  315 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHHHHHHHHcCCH---HHHHHHH
Confidence            9999999999999876532         234555 4666677777 477888999999999999876533   4566777


Q ss_pred             HHHHHHHHHHHHHHHHhcccChHHHHHHHhc
Q 018169          317 AEALKLVLLIGMFFIELKFSLPIYEFNFVVK  347 (360)
Q Consensus       317 ~~~L~~~~~lgl~~~~~G~~~s~~ll~~llG  347 (360)
                      .+.++....+++++.......+|+++++++|
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~  346 (488)
T TIGR02900       316 NQAIKISLLLGLITTVILLVIPDELGALFYG  346 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7788998888888777777789999999885

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=99.74  E-value=2e-15  Score=139.86  Aligned_cols=269  Identities=15%  Similarity=0.186  Sum_probs=173.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccchhhHHHHH
Q 018169           13 SRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLL   92 (360)
Q Consensus        13 ~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~lr~~~~~~~~~~~~~~~~~~   92 (360)
                      .|++.|....++++++++|+.+.+++|.++||+||..+....+. +....+.+-|+..+..|.-..+++.  ++..+...
T Consensus         2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~-~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~   78 (273)
T PF01943_consen    2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIV-SLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF   78 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence            57889999999999999999999999999999999999876644 4455677889999999865443221  11112222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCCch-hhHHHHHHHHH-HHHhhhhhHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 018169           93 KVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFAC-VLELLAEPLYILSQNLLLLRLRLVVETVATFSRC  170 (360)
Q Consensus        93 n~awl~i~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ls~-iie~l~eP~~~~~qr~l~~~~r~~~E~~a~~~~~  170 (360)
                      ........++.++......  ..  . ...++. .....++.+.. ++...........|.+.+++.....+....+.+.
T Consensus        79 ~~~~~~~~~~~~i~~~~~~--~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (273)
T PF01943_consen   79 SSVLFLLLIFSLIFLLILL--IA--S-FFGNPSLSLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSL  153 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HH--H-HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222211111111111111  11  1 222332 22222222222 4566666666677777777777777777777777


Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCcccCcccccHHHHHHHHHHHHHHHHHHH
Q 018169          171 FTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLL  250 (360)
Q Consensus       171 ~~~v~l~~~~~~~~a~~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~~~~~~~~~~ll~~~~~~~~qsi~k~l  250 (360)
                      +..+.......+   +..+..++....+...+.++.+....       ..|.+...+....|++++++.+++..++...+
T Consensus       154 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (273)
T PF01943_consen  154 LLILLLLFLGSS---LWGFLLGLVISSLVSLIISLFYLRRK-------LRPRFSFFSKKFFKEILRFGLPLFLSSLLSWL  223 (273)
T ss_pred             HHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHH-------HcccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            666655444332   44445555555433322222221110       11222212234458999999999999999999


Q ss_pred             HhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhh
Q 018169          251 LQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS  300 (360)
Q Consensus       251 ltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~  300 (360)
                      .++.||++++.+.+.++.|.|+++.++++. ...+..++....+|.+||+
T Consensus       224 ~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~-~~~~~~~~~~~~~P~~s~l  272 (273)
T PF01943_consen  224 YSQIDRLIIGYFLGPEAVGIYSVAYRLASA-ISFLLSSISTVLFPRLSRL  272 (273)
T ss_pred             HHHhHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999997 4555667766999999986

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>TIGR01695 mviN integral membrane protein MviN

Probab=99.70  E-value=2.3e-14  Score=145.79  Aligned_cols=326  Identities=12%  Similarity=0.004  Sum_probs=218.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhh-HHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccchhhHH
Q 018169           11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADY-AIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAA   89 (360)
Q Consensus        11 ~~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~f-Gi~av~l~l~~~tvlflsre~~r~a~lr~~~~~~~~~~~~~~~   89 (360)
                      ++.|++.++.+.++++|+.+|+-..+++|.+.|+++ |.+++...+.......+..-|+..+.++.-..+++.+ ++..+
T Consensus         1 ~~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~-~~~~~   79 (502)
T TIGR01695         1 SLLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE-KEARR   79 (502)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-hHHHH
Confidence            467999999999999999999999999999999999 9888877654333333444568888877433221111 11112


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHhhcc----ccCCch----hhHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHH
Q 018169           90 KLLKVAWLTL-PLGIFITIGACFFVLWWQGL----SYSNPY----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLV  160 (360)
Q Consensus        90 ~~~n~awl~i-~~g~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~  160 (360)
                      ...+..+... ..+++++++.... ..+...    ..+++.    ..-+.+.+.+.++..+........|.+.+++.-..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  158 (502)
T TIGR01695        80 AFANTVTTLLILSLLLVVLIGIFF-APFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSF  158 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHH
Confidence            3445444422 2232223222111 111111    123332    24567788888888888888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCcccCcccccHHHHHHHHH
Q 018169          161 VETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTL  240 (360)
Q Consensus       161 ~E~~a~~~~~~~~v~l~~~~~~~~a~~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~~~~~~~~~~ll~~~~~  240 (360)
                      .+....+...+. +.+.....+.|+.. .+++.++..+...+.++.+..+..    ...-|+.. .+...-||+++++.+
T Consensus       159 ~~i~~~i~~i~~-~~~~~~~~g~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~k~~l~~~~p  231 (502)
T TIGR01695       159 SPILFNIGVILS-LLFFDWNYGQYSLA-LAIGVLIGGVAQLLIQLPFLRKAG----FLLKPRFN-FRDPGLKRFLKLFLP  231 (502)
T ss_pred             HHHHHHHHHHHH-HHHHHcccchHHHH-HHHHHHHHHHHHHHHHHHHHHHCC----CcccCcCC-CCChhHHHHHHHHHH
Confidence            888877655442 22223322323221 124554444333333322222111    11112111 111233899999999


Q ss_pred             HHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhhHHHHHHHHHH
Q 018169          241 FTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEAL  320 (360)
Q Consensus       241 ~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~~~~~~l~~~L  320 (360)
                      ...++.+.++.+..|+.+ +...+.++.|.|+.+.++-.++.-.+..++.....|..|+...++++   ++.++.+.+.+
T Consensus       232 ~~~~~~~~~~~~~id~~~-~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~---~~~~~~~~~~~  307 (502)
T TIGR01695       232 TTLGSSASQITLLINTAL-ASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW---NELRDLLNQGI  307 (502)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHH
Confidence            999999999999999977 77788899999999999999888888899999999999999876533   46778888888


Q ss_pred             HHHHHHHHHHHHhcccChHHHHHHHhcCC
Q 018169          321 KLVLLIGMFFIELKFSLPIYEFNFVVKGI  349 (360)
Q Consensus       321 ~~~~~lgl~~~~~G~~~s~~ll~~llG~k  349 (360)
                      +....++++........+++++++++|++
T Consensus       308 ~~~~~~~~~~~~~l~~~~~~ii~l~~~~~  336 (502)
T TIGR01695       308 RLSLLLTIPSSFGLLILSIPIVSLLFERG  336 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999988888877789999999999953

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=99.70  E-value=5.9e-15  Score=135.77  Aligned_cols=248  Identities=17%  Similarity=0.304  Sum_probs=168.7

Q ss_pred             HHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 018169           28 GIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITI  107 (360)
Q Consensus        28 lltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~lr~~~~~~~~~~~~~~~~~~n~awl~i~~g~~~~~  107 (360)
                      +++|+.+.+++|.++|||||..+....... .+..+.+.|++..+.|+.+.+++     +..+..+....   .++++++
T Consensus         2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~-~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~   72 (251)
T PF13440_consen    2 GINFLFLILLARYLGPEDFGIYALIFSIVS-ILSIVASLGLRQSLVRSAARDKQ-----DIRSLLRFSLL---VSLLLAV   72 (251)
T ss_pred             hHHHHHHHHHHHHCCHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCHH-----HHHHHHHHHHH---HHHHHHH
Confidence            468999999999999999999998766444 44456688999999995333211     23334444322   1222222


Q ss_pred             HHHHHHHHhhccccCCch-hhHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhH
Q 018169          108 GACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKG  186 (360)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~-~~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~~E~~a~~~~~~~~v~l~~~~~~~~a~  186 (360)
                      +++..... ......++. ...+.+.++..+.+.+.+......+.+.++++-...+....+.+.+..+.+.+...+.++.
T Consensus        73 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (251)
T PF13440_consen   73 ILAILAIL-IAYFFGDPELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWSI  151 (251)
T ss_pred             HHHHHHHH-HHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            22211001 111123333 3456677788888899999989999999999999999999988865555554443443333


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCcccCcccccHHHHHHHHHHHHHHHHHHHHhhhceeeeEeccCC
Q 018169          187 -IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP  265 (360)
Q Consensus       187 -~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~~~~~~~~~~ll~~~~~~~~qsi~k~lltegDk~vl~~~~~~  265 (360)
                       +++.+++++..   ...+..  .   +   + . |..+ .+... +++.+.+.++..+++...+.+++|+++++.+.++
T Consensus       152 ~~~~~~~~~~~~---~~~~~~--~---~---~-~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  216 (251)
T PF13440_consen  152 LLAFIISALLAL---LISFYL--L---R---R-K-LRLS-FKFSW-RRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGP  216 (251)
T ss_pred             HHHHHHHHHHHH---HHHHHH--h---c---c-c-cCCC-chhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence             45555555542   111111  1   0   0 0 1111 01112 3479999999999999999999999999997799


Q ss_pred             CcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhh
Q 018169          266 YNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS  300 (360)
Q Consensus       266 ~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~  300 (360)
                      ++.|.|+++..+...+...+.+++.+..+|.+||+
T Consensus       217 ~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~  251 (251)
T PF13440_consen  217 EAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM  251 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999998874

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.24  E-value=1.6e-08  Score=97.62  Aligned_cols=314  Identities=16%  Similarity=0.066  Sum_probs=187.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccchhhHHHHHHH-HHHH
Q 018169           20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKV-AWLT   98 (360)
Q Consensus        20 i~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~lr~~~~~~~~~~~~~~~~~~n~-awl~   98 (360)
                      +..++...+..++-+.++.+ +.+++.|.+.+...+ ......+. .++..+..+.-......++.+...+..+. .+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~a~~i-~~~~~~~~-~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~   79 (342)
T TIGR00797         3 ILANILQPLLGLVDTAFVGH-LGPVDLAAVSLGSSV-FMFLFSIL-MGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA   79 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHhHHH-HHHHHHHH-HHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence            34566666777665555555 678888877776443 22222222 26666654422111001111223334433 3445


Q ss_pred             HHHHHHHHHHHHHHHHHhh-cccc-CCch----hhHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 018169           99 LPLGIFITIGACFFVLWWQ-GLSY-SNPY----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFT  172 (360)
Q Consensus        99 i~~g~~~~~~~~~~~~~~~-~~~~-~~~~----~~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~~E~~a~~~~~~~  172 (360)
                      ...|+++++++... ..+. .... +++.    ...+.+++++.....+........|-.-+.+.-...+....++..+.
T Consensus        80 ~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~  158 (342)
T TIGR00797        80 LLLGLPVLLVGYFF-IDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIIL  158 (342)
T ss_pred             HHHHHHHHHHHHHh-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            55566555443322 1111 1111 2222    13567788888888888888888888888888888888888877777


Q ss_pred             HHHHHH-hccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCcccCcccccHHHHHHHHHHHHHHHHHHHH
Q 018169          173 MCILIV-KQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLL  251 (360)
Q Consensus       173 ~v~l~~-~~~~~~a~~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~~~~~~~~~~ll~~~~~~~~qsi~k~ll  251 (360)
                      .+.+.. .... +++.+.+++.++..+...+.+..+.++.  .+.+..+..+.+.+....|++++++.+....++...+.
T Consensus       159 ~~~li~~~~g~-~g~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~  235 (342)
T TIGR00797       159 NYILIFGKFGF-LGIVGAALATVISYWLMFLLLLYYIKKA--KKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLS  235 (342)
T ss_pred             hHHHHhcCccc-cccHHHHHHHHHHHHHHHHHHHHHHHhC--CCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHH
Confidence            666544 2220 2234444455544333222222111110  00000000011111123379999999999999999999


Q ss_pred             hhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 018169          252 QEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGMFFI  331 (360)
Q Consensus       252 tegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~~~~~~l~~~L~~~~~lgl~~~  331 (360)
                      ++.|+.+++. .+.++.|.|+++.++.+++ -.+...+..+..+..++...+++.   ++.++.+...++....+++++.
T Consensus       236 ~~~~~~i~~~-~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  310 (342)
T TIGR00797       236 FALLALLVAR-LGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAGDP---KRAKEVARVALKLSLLLGLVLA  310 (342)
T ss_pred             HHHHHHHHHH-cCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999987766 5688899999999998764 466667888888888888755433   4667777778888888888777


Q ss_pred             HhcccChHHHHHHH
Q 018169          332 ELKFSLPIYEFNFV  345 (360)
Q Consensus       332 ~~G~~~s~~ll~~l  345 (360)
                      ..-...+++++++.
T Consensus       311 ~~l~~~~~~i~~~~  324 (342)
T TIGR00797       311 IILILFREFIARLF  324 (342)
T ss_pred             HHHHHHHHHHHHHh
Confidence            66666788877763

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=98.66  E-value=5.6e-05  Score=76.83  Aligned_cols=216  Identities=13%  Similarity=0.083  Sum_probs=151.2

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018169          128 AIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGY  207 (360)
Q Consensus       128 ~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~~E~~a~~~~~~~~v~l~~~~~~~~a~~~fa~gql~~s~~~~~~y~~~  207 (360)
                      ...+.....+.-+++.-.....|.+-+|..-........+.-.+..+. .....+.+.+.+.++|.++.++...+.....
T Consensus       100 l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~-~~~~~~~~~i~~la~g~~~g~~~~~l~~l~~  178 (451)
T PF03023_consen  100 LLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLL-LSNSWGQENIYALAWGVLIGAIIQFLIQLPY  178 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH-HHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457777888888888888888888888887777666666543333222 2222221235556666666654433222111


Q ss_pred             HHhhcccccCccCCCcccCc--ccccHHHHHHHHHHHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHH
Q 018169          208 FLLFGAFKTSDLFPFRLGNM--MSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMV  285 (360)
Q Consensus       208 ~~~~~~~~~~~~~P~r~~~~--~~~~~~ll~~~~~~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~l  285 (360)
                      .+..       .+..+++.+  ..--|++++...+....+...|+..--||.+.+.+. ......++-|..+-.+|...+
T Consensus       179 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~-~G~vs~l~YA~~l~~lp~~i~  250 (451)
T PF03023_consen  179 LRRF-------GFRFRPKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG-EGSVSALNYAQRLYQLPLGIF  250 (451)
T ss_pred             HHHC-------CCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHH
Confidence            1111       112222111  111268888889999999999999999999888744 556778888999999999999


Q ss_pred             HhhhhhchHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHhc-CCcCccch
Q 018169          286 FLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVVK-GICLTISV  355 (360)
Q Consensus       286 f~Piee~~~~~Fs~~~~~~~~~~~~~~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~llG-~kW~~~~~  355 (360)
                      ..|+....+|.+||..++++   .++.++.+.+.++...++.+++..+...+++++++++|+ ++-..+++
T Consensus       251 ~~~i~tv~~P~ls~~~~~~d---~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~  318 (451)
T PF03023_consen  251 AVSISTVVFPKLSRLAAEGD---WEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDT  318 (451)
T ss_pred             HHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHH
Confidence            99999999999999987753   346778888899999999999999888999999999994 55554443

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=98.47  E-value=0.00032  Score=71.20  Aligned_cols=317  Identities=15%  Similarity=0.064  Sum_probs=177.0

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHH---HHHhcccCCCCcc
Q 018169            7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR---ACMRADIKCDGAS   83 (360)
Q Consensus         7 ~~~~~~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~---a~lr~~~~~~~~~   83 (360)
                      ++-+++.+-+.=.++.++...+.+++-+.++.|++++++.+.+++...+......+.  .++..   +...+..+.   +
T Consensus         9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~--~~~~~g~~~lvsq~~Ga---~   83 (453)
T PRK09575          9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIG--LMVGMGTGSLLSIKRGE---G   83 (453)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH--HHHhccHHHHHHHHhcC---C
Confidence            455666677777888899999999999999999999888776665544332222111  12211   233333332   1


Q ss_pred             chhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh-ccccCCc--h---hhHHHHHHHHHHHHhhhhhHHHHHHHhHhHH
Q 018169           84 REENAAKLLKVA-WLTLPLGIFITIGACFFVLWWQ-GLSYSNP--Y---AQAIFINGFACVLELLAEPLYILSQNLLLLR  156 (360)
Q Consensus        84 ~~~~~~~~~n~a-wl~i~~g~~~~~~~~~~~~~~~-~~~~~~~--~---~~~~~~~~ls~iie~l~eP~~~~~qr~l~~~  156 (360)
                      |++...+..+.+ |.++..+++.+++.... ..+. .....|+  +   ..-+.+++++.....+........|..-+-+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~  162 (453)
T PRK09575         84 DLEKAKRILTTGLLLLLLLGPIVSVILFLF-ADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPN  162 (453)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence            222333444443 33555555444433221 1111 1121222  1   1345677777777777777666666655556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCchhH----HHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCccc-C--ccc
Q 018169          157 LRLVVETVATFSRCFTMCILIVKQYEMEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLG-N--MMS  229 (360)
Q Consensus       157 ~r~~~E~~a~~~~~~~~v~l~~~~~~~~a~----~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~~-~--~~~  229 (360)
                      .-......+.+++.+....++... + +++    ++..+++....+.. ..|+   .. ++  .  ..+.+.+ .  +..
T Consensus       163 ~~~~~~~~~~~~ni~l~~~li~~~-~-~Gi~Gaa~At~is~~~~~~~~-~~~~---~~-~~--~--~~~~~~~~~~~~~~  231 (453)
T PRK09575        163 LATGLMVIGALINIVLDYLFIGWL-D-WGLTGAAIATALAQLVVTVLG-LGYF---FS-SR--A--NIRLTLKELRFNWS  231 (453)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhC-C-chhHHHHHHHHHHHHHHHHHH-HHHH---HC-CC--c--eeEEeeccCCcCHH
Confidence            566666666666666666554332 1 333    44445555432211 1121   11 11  1  1111100 0  111


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhh
Q 018169          230 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  309 (360)
Q Consensus       230 ~~~~ll~~~~~~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~  309 (360)
                      .-|++++.+.+.+.+.....+..---..+++.+.+.++.+.|++++|+-++ .-....-+..+.-+.=++....++.   
T Consensus       232 ~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvg~~~Ga~~~---  307 (453)
T PRK09575        232 LAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVL-YYLVAEGIAEGMQPPVSYYFGARQY---  307 (453)
T ss_pred             HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCh---
Confidence            236778888877777655444433333344555555678999998887766 4444555677777788888776544   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Q 018169          310 KKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNF  344 (360)
Q Consensus       310 ~~~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~  344 (360)
                      ++.++.+..-++.....+++...+....+++++++
T Consensus       308 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~l  342 (453)
T PRK09575        308 DNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIAL  342 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            46777777788888888777776666667777766

>PRK01766 multidrug efflux protein; Reviewed

Probab=98.46  E-value=0.00026  Score=71.54  Aligned_cols=321  Identities=15%  Similarity=0.048  Sum_probs=170.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHH---hcccCCCCccchhhH
Q 018169           12 LSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACM---RADIKCDGASREENA   88 (360)
Q Consensus        12 ~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~l---r~~~~~~~~~~~~~~   88 (360)
                      +.+-+.-.+..++...+..++-+.++.| +.+++.+-+++...+......+.  .++-.+..   .+..++   +|.++.
T Consensus        14 il~~~~P~~~~~~~~~~~~~~d~~~i~~-~g~~~laa~~~~~~~~~~~~~~~--~g~~~a~~~~vs~~~g~---~~~~~~   87 (456)
T PRK01766         14 LLALALPILLAQVAQTAMGFVDTVMAGG-VSATDLAAVAIGTSIWLPVILFG--HGLLLALTPIVAQLNGA---GRRERI   87 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcC---CChHHH
Confidence            4455556677777777778777766666 57776665555433322111222  24433322   222222   112233


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHhh-ccccCCch----h-hHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHHH
Q 018169           89 AKLLKVAW-LTLPLGIFITIGACFFVLWWQ-GLSYSNPY----A-QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVV  161 (360)
Q Consensus        89 ~~~~n~aw-l~i~~g~~~~~~~~~~~~~~~-~~~~~~~~----~-~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~~  161 (360)
                      ++..+.+. +++..|++++++.... ..+. .....+|.    . .-+.+++.+.+...+........|-.-+.+.-...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  166 (456)
T PRK01766         88 AHQVRQGLWLALFLSVLIMLVLYNA-VPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVI  166 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence            44444443 3445555444332221 1111 12222332    1 23455666666667766666666666666777777


Q ss_pred             HHHHHHHHHHHHHHHHHhc-c-CchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCcccCcccccHHHHHHHH
Q 018169          162 ETVATFSRCFTMCILIVKQ-Y-EMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCT  239 (360)
Q Consensus       162 E~~a~~~~~~~~v~l~~~~-~-~~~a~~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~~~~~~~~~~ll~~~~  239 (360)
                      ...+.+++.+....+++.. + ...++.+.+++.....+...+.++.+..+....+.....+...+.+....|++++++.
T Consensus       167 ~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~  246 (456)
T PRK01766        167 GFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGL  246 (456)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccc
Confidence            7777777776665554321 0 1123333333433332222222222211111000000001000001122378999999


Q ss_pred             HHHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhhHHHHHHHHH
Q 018169          240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA  319 (360)
Q Consensus       240 ~~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~~~~~~l~~~  319 (360)
                      +...+.....+....|..+++.+ +.++...|++++|+.++.. .+..-+-.+.-+.-++....+++   ++.++.....
T Consensus       247 P~~~~~~~~~~~~~~~~~~~~~~-G~~~lAa~~i~~~i~~~~~-~~~~gl~~a~~~~v~~~~Ga~~~---~~~~~~~~~~  321 (456)
T PRK01766        247 PIGLAIFFEVSLFAVVTLLVSPL-GTVTVAAHQIALNFSSLLF-MLPLSLAMALTIRVGFELGAGRT---LDARQYAYIG  321 (456)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHH
Confidence            99999999888888888888776 4577999999999877642 33333445555556666655433   4677777777


Q ss_pred             HHHHHHHHHHHHHhcccChHHHHHH
Q 018169          320 LKLVLLIGMFFIELKFSLPIYEFNF  344 (360)
Q Consensus       320 L~~~~~lgl~~~~~G~~~s~~ll~~  344 (360)
                      ++....++++........++++.++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~i~~l  346 (456)
T PRK01766        322 LAVGLGMALLTAIFLVLFREQIALL  346 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777777666666677777765

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=98.42  E-value=0.00052  Score=69.92  Aligned_cols=318  Identities=15%  Similarity=0.030  Sum_probs=173.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHH---HhcccCCCCccchh
Q 018169           10 TSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRAC---MRADIKCDGASREE   86 (360)
Q Consensus        10 ~~~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~---lr~~~~~~~~~~~~   86 (360)
                      +++.+-+.=.++.++..-+..++-|.++.| ++++...-+++...+...+..+.  .|+..++   +.+..+.   +|.+
T Consensus        10 k~il~~a~P~~~~~~~~~~~~~~d~~~v~~-lg~~alAa~~i~~~i~~~~~~~~--~gl~~~~~~i~aq~~Ga---~~~~   83 (464)
T PRK00187         10 KAILRLAGPLIASQLAHMLMVFTDTLMMGR-LGPEALAGGGLGAASYSFVSIFC--VGVIAAVGTLVAIRHGA---GDIE   83 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcC---CChh
Confidence            345566666778888888889999999999 57777665555544332222221  3444333   2222222   1222


Q ss_pred             hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh-ccccCCch--h---hHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHH
Q 018169           87 NAAKLLKVAWL-TLPLGIFITIGACFFVLWWQ-GLSYSNPY--A---QAIFINGFACVLELLAEPLYILSQNLLLLRLRL  159 (360)
Q Consensus        87 ~~~~~~n~awl-~i~~g~~~~~~~~~~~~~~~-~~~~~~~~--~---~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~  159 (360)
                      ..++..+.++. .+.++++..++. .. ..+. .....||.  .   .-+.+++++...-++....-...|-.-+.+.-.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~  161 (464)
T PRK00187         84 GATRLAQAGLWLAWLLALVAALLL-WN-LKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM  161 (464)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            33445555543 444444433321 11 1111 12222332  1   123444444444444444433444444555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccC--chhH----HHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCc---ccCcccc
Q 018169          160 VVETVATFSRCFTMCILIVKQYE--MEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFR---LGNMMSY  230 (360)
Q Consensus       160 ~~E~~a~~~~~~~~v~l~~~~~~--~~a~----~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r---~~~~~~~  230 (360)
                      .+-..+.+++.+...++++-..+  .+++    ++..+++....    +.+..+.... +.. + .++.+   .+.+...
T Consensus       162 ~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~----~~~~~~~~~~-~~~-~-~~~~~~~~~~~~~~~  234 (464)
T PRK00187        162 VISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMA----LALALYIRRH-PAY-A-AYPLRKGLSRPSRAA  234 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHH----HHHHHHHHhc-chh-h-hhhhhccccCCCHHH
Confidence            55566666666666555432111  1233    44444443322    1121122211 100 0 01110   0011122


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhh
Q 018169          231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  310 (360)
Q Consensus       231 ~~~ll~~~~~~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~  310 (360)
                      -|++++++.+...+++........|..+++++.+ ++...|++++|+.++ .-.+..=+-.+.-+.=++....+++   +
T Consensus       235 ~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~-~alAa~~i~~~i~~l-~~~~~~gi~~a~~~lvgq~~Ga~~~---~  309 (464)
T PRK00187        235 LRELWRLGLPIGGTYAVEVGLFTFAALCMGALGS-TQLAAHQIALQIVSV-AFMVPVGLSYAVTMRVGQHYGAGRL---L  309 (464)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCH---H
Confidence            3799999999999999999999999999988655 799999999998886 3333334566666777777766543   4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHhc
Q 018169          311 KIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVVK  347 (360)
Q Consensus       311 ~~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~llG  347 (360)
                      +.++.....++....++++...+....+++++++.-+
T Consensus       310 ~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~  346 (464)
T PRK00187        310 EARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLD  346 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6666666677777777776666666678888877543

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=98.00  E-value=0.0094  Score=60.76  Aligned_cols=320  Identities=16%  Similarity=0.113  Sum_probs=186.1

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHH---hcccCCCCccc
Q 018169            8 HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACM---RADIKCDGASR   84 (360)
Q Consensus         8 ~~~~~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~l---r~~~~~~~~~~   84 (360)
                      ..+.+.+=+.=.+..++..-+.+++-|.++.|+. +++.+-+++...+......++  .+++.++-   .+.-+.   +|
T Consensus        15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~-~~alaav~la~~i~~~~~~~~--~gl~~g~~~liaq~~Ga---~~   88 (455)
T COG0534          15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG-AEALAAVGLANPIFFLIIAIF--IGLGTGTTVLVAQAIGA---GD   88 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHcC---Cc
Confidence            3444555555567889999999999999999998 888887887766544444333  23333221   222222   22


Q ss_pred             hhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh-ccccCCc----hh-hHHHHHHHHHHHHhhhhhHHHHHHHhHhHHH
Q 018169           85 EENAAKLLKV-AWLTLPLGIFITIGACFFVLWWQ-GLSYSNP----YA-QAIFINGFACVLELLAEPLYILSQNLLLLRL  157 (360)
Q Consensus        85 ~~~~~~~~n~-awl~i~~g~~~~~~~~~~~~~~~-~~~~~~~----~~-~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~  157 (360)
                      .++.++..+. .|+++.+|+++.++.... .-+. .....++    +. .=+.+..++...-.+........+-.-+.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~  167 (455)
T COG0534          89 RKKAKRVLGQGLLLALLLGLLLAILLLFF-AEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKT  167 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence            2234444444 444666665555443221 1111 1111111    11 2346667777878888888777777778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCchhH----HHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCcc-cCcccccH
Q 018169          158 RLVVETVATFSRCFTMCILIVKQYEMEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRL-GNMMSYDK  232 (360)
Q Consensus       158 r~~~E~~a~~~~~~~~v~l~~~~~~~~a~----~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~-~~~~~~~~  232 (360)
                      -..+-..+.+...+....+++..-+.+++    ++-+++|.+..+..    +.+....++  .......+. +.+....|
T Consensus       168 ~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~  241 (455)
T COG0534         168 PMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLL----LIYLLRKKR--LLSLFKKKLLKPDRKLLK  241 (455)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHH----HHHHHhcch--hhhhhhhhccCCCHHHHH
Confidence            88888999999999888877653111334    45555555543222    222111110  000110110 11123347


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhh---hhhchHHHHHhhhcCCCchhh
Q 018169          233 QLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLP---FEESSYATFARSASGQYPQKS  309 (360)
Q Consensus       233 ~ll~~~~~~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~P---iee~~~~~Fs~~~~~~~~~~~  309 (360)
                      |+++.+.+...+++.-.....-=..+++++. .+....|+++.++.++    .+.|   +..+.-+.-.+....++.   
T Consensus       242 ~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G-~~~lAa~~i~~~i~~~----~~~~~~gi~~a~~~lvG~~~Ga~~~---  313 (455)
T COG0534         242 EILRLGLPIFLESLSESLGFLLLTLFVARLG-TVALAAYGIALRIASF----IFMPPFGIAQAVTILVGQNLGAGNY---  313 (455)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCH---
Confidence            8999999988888777666665555666555 6667777777776555    4444   566667777777766544   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHhcC
Q 018169          310 KKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVVKG  348 (360)
Q Consensus       310 ~~~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~llG~  348 (360)
                      +++++.....++....++++....-...+++++++...+
T Consensus       314 ~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~  352 (455)
T COG0534         314 KRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTD  352 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            356666666677777766666555555577777764433

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=97.93  E-value=0.023  Score=57.63  Aligned_cols=317  Identities=10%  Similarity=-0.025  Sum_probs=159.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHH---HHHHhcccCCCCccchh
Q 018169           10 TSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFR---RACMRADIKCDGASREE   86 (360)
Q Consensus        10 ~~~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r---~a~lr~~~~~~~~~~~~   86 (360)
                      +++.+-+.=.+..|+..-+.+++-+.++.|+.++++..-+++...+......+.  .++.   .+++.+..++++   .+
T Consensus         9 k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~--~~~~~g~~~lvsq~~Ga~~---~~   83 (441)
T PRK10367          9 KALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLL--LFLRMSTTGLTAQAFGAKN---PQ   83 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCC---HH
Confidence            445565666778888999999999999999777766554554432211111111  1222   234444444322   22


Q ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh-ccccCCch--h---hHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHH
Q 018169           87 NAAKLL-KVAWLTLPLGIFITIGACFFVLWWQ-GLSYSNPY--A---QAIFINGFACVLELLAEPLYILSQNLLLLRLRL  159 (360)
Q Consensus        87 ~~~~~~-n~awl~i~~g~~~~~~~~~~~~~~~-~~~~~~~~--~---~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~  159 (360)
                      ...+.. +..|+++..++++++..... ..+. .....||.  .   .-+.+.+++...-.+........|-.-+-+.-.
T Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~  162 (441)
T PRK10367         84 ALARALVQPLLLALGAGALIALLRTPL-IDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPV  162 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            223333 33333444444443221111 1111 11112222  1   223445555555555555555555555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhH----HHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCcccCcccccHHHH
Q 018169          160 VVETVATFSRCFTMCILIVKQYEMEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLA  235 (360)
Q Consensus       160 ~~E~~a~~~~~~~~v~l~~~~~~~~a~----~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~~~~~~~~~~ll  235 (360)
                      .+...+.++..+....+++...  +++    ++..++|.+..+..  .|+.+ +.. ..+....-+.++. ....-|+++
T Consensus       163 ~~~ii~~~vni~l~~~lI~~~~--lGv~Gaa~At~is~~~~~i~~--~~~~~-~~~-~~~~~~~~~~~~~-~~~~~~~il  235 (441)
T PRK10367        163 ILLVVGNILNIVLDLWLVMGLH--MNVQGAALATVIAEYATLLIG--LLMVR-KVL-KLRGISLEMLKTA-WRGNFRRLL  235 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC--CccHHHHHHHHHHHHHHHHHH--HHHHH-HHH-hhccccHHHhhhh-hHHHHHHHH
Confidence            6666666666666665544321  333    45556666543222  12221 110 0000000001110 001226778


Q ss_pred             HHHHHHHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhhHHHHH
Q 018169          236 NMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNS  315 (360)
Q Consensus       236 ~~~~~~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~~~~~~  315 (360)
                      +.+.+...+.....+....=..+++.+. .+....|.++.|+.++.. ....-+..+.-+.=++....++.   ++.++.
T Consensus       236 ~ig~P~~~~~~~~~~~~~~~~~~~~~~G-~~alAa~~I~~~i~~~~~-~~~~gl~~a~~~lvg~~~Ga~~~---~~a~~~  310 (441)
T PRK10367        236 ALNRDIMLRSLLLQLCFGAITVLGARLG-SDIIAVNAVLMTLLTFTA-YALDGFAYAVEAHSGQAYGARDG---SQLLDV  310 (441)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHcCCCH---HHHHHH
Confidence            8888777777766665555455566554 568889999988777642 22223566666777777766544   355565


Q ss_pred             HHHHHHHHHHHHHHHHHhcccChHHHHHH
Q 018169          316 LAEALKLVLLIGMFFIELKFSLPIYEFNF  344 (360)
Q Consensus       316 l~~~L~~~~~lgl~~~~~G~~~s~~ll~~  344 (360)
                      ....++....++++...+-...+++++.+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  339 (441)
T PRK10367        311 WRAACRQSGIVALLFSLVYALAGEHIIAL  339 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666665554444333345555555

>PRK10189 MATE family multidrug exporter; Provisional

Probab=97.44  E-value=0.18  Score=51.61  Aligned_cols=312  Identities=8%  Similarity=-0.063  Sum_probs=145.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHH---HHhcccCCCCccchhhHH
Q 018169           13 SRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRA---CMRADIKCDGASREENAA   89 (360)
Q Consensus        13 ~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a---~lr~~~~~~~~~~~~~~~   89 (360)
                      .+-+.=.++.++...+.+++.|.++.| ++++...-+++...+......+.  .++..+   ++.+..+.+   |.+...
T Consensus        32 l~la~P~~~~~~~~~~~~~vd~~~vg~-lG~~alAA~~i~~~i~~~~~~~~--~gl~~g~~~lvsq~~Ga~---~~~~~~  105 (478)
T PRK10189         32 TPLAVPIFIENLCVLLMGVLSTFLVSW-LGKEAMAGVGLADSFNMVIMAFF--AAIDLGTTVVVAFSLGKR---DRRRAR  105 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCC---CHHHHH
Confidence            333334556677777777777777776 68887765665544322221111  233322   233333321   112233


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHhh-cccc--CCchh-----hHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHH
Q 018169           90 KLLKVA-WLTLPLGIFITIGACFFVLWWQ-GLSY--SNPYA-----QAIFINGFACVLELLAEPLYILSQNLLLLRLRLV  160 (360)
Q Consensus        90 ~~~n~a-wl~i~~g~~~~~~~~~~~~~~~-~~~~--~~~~~-----~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~  160 (360)
                      +..+.+ ++++..+++++++.... ..+. ....  .||..     .-+.+.+++.....+........|-.-+-+.-..
T Consensus       106 ~~~~~~l~~~~~~~~~~~~l~~~~-~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~  184 (478)
T PRK10189        106 AAARQSLVIMTLFAVLLAVLIHFF-GEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL  184 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence            344333 33444454444332211 1111 1111  23321     2234455555666666665555555555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHhccC--chhH----HHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCcc-c----Cccc
Q 018169          161 VETVATFSRCFTMCILIVKQYE--MEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRL-G----NMMS  229 (360)
Q Consensus       161 ~E~~a~~~~~~~~v~l~~~~~~--~~a~----~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~-~----~~~~  229 (360)
                      +...+.+++.+..+.+.+...+  .+++    ++..++|.+..+..  .|+.+ ..  . +  ...+.+. +    .+..
T Consensus       185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~--~~~~~-~~--~-~--~~~~~~~~~~~~~~~~~  256 (478)
T PRK10189        185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAI--IWVLM-IG--F-N--PALRISLKSYFKPLNFA  256 (478)
T ss_pred             HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHH--HHHHH-hc--c-C--ccceeeeccccccCCHH
Confidence            6666666666666665543211  1333    45555555543221  22221 10  0 0  0011110 0    0112


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhh
Q 018169          230 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  309 (360)
Q Consensus       230 ~~~~ll~~~~~~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~  309 (360)
                      ..+++++.+.+...+.+.-.+..=--..+++.+ +.+....|.++.|+-++.. ....-+..+.-+.=++....++.   
T Consensus       257 ~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~-G~~~~Aa~~I~~~i~~~~~-~~~~gi~~A~~~lvg~~~Ga~~~---  331 (478)
T PRK10189        257 IIWEVMGIGIPASIESVLFNGGKLLTQMFVAGM-GTSVIAGNFIAFSIAALIN-LPGNALGSASTIITGTRLGKGQI---  331 (478)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCH---
Confidence            236777777776655444433221111122222 3456777888888776632 23333566666666666665544   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Q 018169          310 KKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNF  344 (360)
Q Consensus       310 ~~~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~  344 (360)
                      ++.++.....++....++++...+-...+++++++
T Consensus       332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l  366 (478)
T PRK10189        332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASF  366 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555555555555555544444333345555544

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=97.12  E-value=0.44  Score=49.39  Aligned_cols=324  Identities=12%  Similarity=0.010  Sum_probs=163.7

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHH----hHHHHHHHHHhcccCCCCcc
Q 018169            8 HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFL----SREGFRRACMRADIKCDGAS   83 (360)
Q Consensus         8 ~~~~~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlfl----sre~~r~a~lr~~~~~~~~~   83 (360)
                      -..++.|.+.......++||++.|+=-+++++.+....   .+-++......--++    .+-.+.+|.+-.=...++.+
T Consensus         5 ~~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~---~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~   81 (518)
T COG0728           5 SKMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGA---AADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKE   81 (518)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch---HHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcc
Confidence            34567788888899999999999999999999987732   333332222222222    22223444432111111111


Q ss_pred             chhhHHHHHHHHHH-HHHHHHHHHHHHHHH---HH-HhhccccCCchh-hHH---HHHHHHHHHHhhhhhHHHHHHHhHh
Q 018169           84 REENAAKLLKVAWL-TLPLGIFITIGACFF---VL-WWQGLSYSNPYA-QAI---FINGFACVLELLAEPLYILSQNLLL  154 (360)
Q Consensus        84 ~~~~~~~~~n~awl-~i~~g~~~~~~~~~~---~~-~~~~~~~~~~~~-~~~---~~~~ls~iie~l~eP~~~~~qr~l~  154 (360)
                      +++....+...... ...+.++++++..+.   .. .......++++. ...   .+.---.++-.+..-...+.|..-+
T Consensus        82 ~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~  161 (518)
T COG0728          82 GEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNR  161 (518)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCe
Confidence            11122222222110 011111222221111   11 111111122221 111   1222222222333333344444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhccCchh-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCcccCcccccH
Q 018169          155 LRLRLVVETVATFSRCFTMCILI-VKQYEMEK-GIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDK  232 (360)
Q Consensus       155 ~~~r~~~E~~a~~~~~~~~v~l~-~~~~~~~a-~~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~~~~~~~~~  232 (360)
                      |..-+.....-.    +..++.. +..+..+. .++.++|-++.++.-+...+.+.+..+ ..   .-|+++.++. --|
T Consensus       162 F~~~a~aPvl~N----v~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g-~~---~~p~~~~~~~-~lk  232 (518)
T COG0728         162 FFIPAFAPVLLN----VSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAG-LL---IKPRFGFKDP-GLK  232 (518)
T ss_pred             echhhhhHHHHH----HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cc---cCCCCCCCch-hHH
Confidence            444443333333    3333222 22232233 466667777776654433322222211 01   1122211111 115


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhhHH
Q 018169          233 QLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI  312 (360)
Q Consensus       233 ~ll~~~~~~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~~~  312 (360)
                      ++...........-..|++.--|..+-+...+ ...-.+.-++-+=.+|--++---+-....|..||...+++.   ++.
T Consensus       233 ~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~-Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~---~~~  308 (518)
T COG0728         233 RFLKLMLPALLGVSISQINLLIDTAIASFLAE-GSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDW---PEF  308 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCh---HHH
Confidence            56666666677777788877777665554432 23334555655666666666666788889999999877543   356


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHhc
Q 018169          313 GNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVVK  347 (360)
Q Consensus       313 ~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~llG  347 (360)
                      .+.+..-+|...++.++...+....|+++++++|.
T Consensus       309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~  343 (518)
T COG0728         309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFE  343 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            67777789999999999999888899999999997

>PRK10459 colanic acid exporter; Provisional

Probab=95.07  E-value=4  Score=41.51  Aligned_cols=174  Identities=14%  Similarity=0.064  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHH----HhcccCCCCccchhhH
Q 018169           13 SRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRAC----MRADIKCDGASREENA   88 (360)
Q Consensus        13 ~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~----lr~~~~~~~~~~~~~~   88 (360)
                      .+=..|.+..++...+.+-.-+.++.+.++|++.|..+.+..+.......++- .+....    -|.+++++  +-++..
T Consensus       210 l~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~-~i~~v~~P~~s~~~~~~~--~~~~~~  286 (492)
T PRK10459        210 LSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINP-IITRVAFPVFAKIQDDTE--KLRVGF  286 (492)
T ss_pred             HhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHhcCCHH--HHHHHH
Confidence            33344677777777777777778889999999999998877654332222221 222211    12211110  001112


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccCCch---hhHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHHHHHH
Q 018169           89 AKLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNPY---AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETV  164 (360)
Q Consensus        89 ~~~~n~a-wl~i~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~~E~~  164 (360)
                      .+..+.. +..+|..+.+.+..--+    ....+++.|   .+.+.++++..++..+..|.....+-.-+.+.-.+.+..
T Consensus       287 ~~~~~~~~~~~~p~~~~l~~~a~~i----i~ll~g~~~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~  362 (492)
T PRK10459        287 LKLLSVLGIINFPLLLGLMVVSNNF----VPLVFGEKWNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVF  362 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH----HHHhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHH
Confidence            2233322 22344333222221110    112234444   245677888888888888876555544444544445544


Q ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Q 018169          165 ATFSRCFTMCILIVKQYEMEKGIVFALSQVAYA  197 (360)
Q Consensus       165 a~~~~~~~~v~l~~~~~~~~a~~~fa~gql~~s  197 (360)
                      ..++.....+.    ....+++.+.+++..+..
T Consensus       363 ~~~~~i~~~~~----~~~~~G~~g~a~a~~i~~  391 (492)
T PRK10459        363 KTFLFIPAIVI----GGQLAGLIGVALGFLLVQ  391 (492)
T ss_pred             HHHHHHHHHHH----HHhhccHHHHHHHHHHHH
Confidence            43332222221    112234555555555543

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=94.74  E-value=4.7  Score=40.69  Aligned_cols=163  Identities=21%  Similarity=0.188  Sum_probs=100.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccchhhHHHH
Q 018169           12 LSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKL   91 (360)
Q Consensus        12 ~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~lr~~~~~~~~~~~~~~~~~   91 (360)
                      ..+-............+.+-.=+.++.+.++|++.|+.+. ...+.....++.. ++..++.-.-....+.+++...++.
T Consensus       215 ~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~-a~~i~~~~~~~~~-~l~~~l~P~~s~~~~~~~~~~~~~~  292 (480)
T COG2244         215 LLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSA-AQRLVSLLLIVAS-ALNRVLFPALSRAYAEGDRKALKKL  292 (480)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheeccc-ccHHHHHHHHHHH-HHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            4444556777788888888899999999999999999994 4444444445544 6666655321111000111111112


Q ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHH-hh-ccccCCch---hhHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHHHHHH
Q 018169           92 LK--VAWLTLPLGIFITIGACFFVLW-WQ-GLSYSNPY---AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETV  164 (360)
Q Consensus        92 ~n--~awl~i~~g~~~~~~~~~~~~~-~~-~~~~~~~~---~~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~~E~~  164 (360)
                      .+  +.++ ...+++..+.+..  .. +. ...++++|   ...+.+++++.++..+.+|.....|-.-+.+...+....
T Consensus       293 ~~~~~~~~-~~~~~p~~~~l~~--~~~~~i~~~fg~~~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  369 (480)
T COG2244         293 LRQSLKLL-LLISIPALLGLLL--LAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLI  369 (480)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHH--HHhhhheeecCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHH
Confidence            22  2222 1222222222111  22 11 23355555   357799999999999999999999988888888888888


Q ss_pred             HHHHHHHHHHHHHHh
Q 018169          165 ATFSRCFTMCILIVK  179 (360)
Q Consensus       165 a~~~~~~~~v~l~~~  179 (360)
                      +.+.+.+..+.+...
T Consensus       370 ~~i~~~~l~~~li~~  384 (480)
T COG2244         370 SALLNLILNLLLIPR  384 (480)
T ss_pred             HHHHHHHHHhHHHHh
Confidence            888888887776443

>PRK15099 O-antigen translocase; Provisional

Probab=94.53  E-value=5.5  Score=39.56  Aligned_cols=45  Identities=11%  Similarity=0.061  Sum_probs=38.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHH
Q 018169           11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHL   55 (360)
Q Consensus        11 ~~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l   55 (360)
                      ++.+-..+.+..++...+.+...|.++.+..++++-|..+++..+
T Consensus       216 ~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i  260 (416)
T PRK15099        216 QLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSI  260 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHH
Confidence            455556688888999999999999999999999999999877664

>TIGR00797 matE putative efflux protein, MATE family

Probab=93.99  E-value=0.17  Score=48.64  Aligned_cols=101  Identities=14%  Similarity=0.170  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhhHHHHHHHHHH
Q 018169          241 FTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEAL  320 (360)
Q Consensus       241 ~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~~~~~~l~~~L  320 (360)
                      .+.++++.++..-.|+++++.+. .++.|.|+++..+.. +.+.+...+..+..+..++...++++   ++.++.+...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~a~~i~~-~~~~~~~~i~~~~~~~~s~~~g~~~~---~~~~~~~~~~~   76 (342)
T TIGR00797         2 AILANILQPLLGLVDTAFVGHLG-PVDLAAVSLGSSVFM-FLFSILMGLGTATTALVAQAVGAGNY---QRLGRQAQQSL   76 (342)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHhHHHHH-HHHHHHHHHHHhHHHHHHHHHCCCCh---HHHHHHHHHHH
Confidence            45677888888899999999965 678999999977644 67788888999999999998766533   35666777788


Q ss_pred             HHHHHHHHHHHHhcccChHHHHHHHhc
Q 018169          321 KLVLLIGMFFIELKFSLPIYEFNFVVK  347 (360)
Q Consensus       321 ~~~~~lgl~~~~~G~~~s~~ll~~llG  347 (360)
                      +....+++++..+....++++.++ +|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~-~~  102 (342)
T TIGR00797        77 LLALLLGLPVLLVGYFFIDPLLSL-MG  102 (342)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH-hC
Confidence            888888888887777788888865 44

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK01766 multidrug efflux protein; Reviewed

Probab=93.73  E-value=0.26  Score=49.76  Aligned_cols=111  Identities=9%  Similarity=0.055  Sum_probs=83.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhh
Q 018169          231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  310 (360)
Q Consensus       231 ~~~ll~~~~~~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~  310 (360)
                      -|++++++.+...+++...+..--|.++++++ +.++++.++++.++-.. .-.+..-+....-+.-|+....++.   +
T Consensus        11 ~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~-g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~~~---~   85 (456)
T PRK01766         11 ARQLLALALPILLAQVAQTAMGFVDTVMAGGV-SATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAGRR---E   85 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCh---H
Confidence            37899999999999999999999999999986 55678888888766332 2334444666777777777766433   4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHh
Q 018169          311 KIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVV  346 (360)
Q Consensus       311 ~~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~ll  346 (360)
                      +.++.+..-++....++++..++....++++++++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  121 (456)
T PRK01766         86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMN  121 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcC
Confidence            566777778888888888777766667788887643

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=91.90  E-value=0.95  Score=45.88  Aligned_cols=112  Identities=11%  Similarity=-0.034  Sum_probs=86.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhh
Q 018169          230 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  309 (360)
Q Consensus       230 ~~~~ll~~~~~~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~  309 (360)
                      ..|++++++.+...++++..+.+=-|.++++++.+.++.+.|++++.+-.+.. .+..=+...+-+.-++....++.   
T Consensus        10 ~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~-~~~~~~~~g~~~lvsq~~Ga~~~---   85 (453)
T PRK09575         10 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIIL-GIGLMVGMGTGSLLSIKRGEGDL---   85 (453)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHhcCCCH---
Confidence            34899999999999999999999999999999988888888888766644432 22223444555677777765533   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Q 018169          310 KKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFV  345 (360)
Q Consensus       310 ~~~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~l  345 (360)
                      ++.++.+...++....+++++..+....++++++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~  121 (453)
T PRK09575         86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQ  121 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            467777777888888888888877777889988764

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=91.66  E-value=16  Score=36.73  Aligned_cols=68  Identities=12%  Similarity=0.065  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Q 018169          127 QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAY  196 (360)
Q Consensus       127 ~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~~E~~a~~~~~~~~v~l~~~~~~~~a~~~fa~gql~~  196 (360)
                      ..+.+++++.++..+..+.....+-.-+-+...+....+.+++.+..+.+... + .+++.+.+++..+.
T Consensus       352 ~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~-~-~~G~~Gaaia~~i~  419 (488)
T TIGR02900       352 NFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSI-P-SINIYGYAITFIIT  419 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhc-c-ccccHHHHHHHHHH
Confidence            45677888888888888876666665566777777777777766665554321 1 23344444444443

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=91.65  E-value=0.14  Score=43.48  Aligned_cols=99  Identities=13%  Similarity=0.220  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhhHHHHHHHHHH
Q 018169          241 FTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEAL  320 (360)
Q Consensus       241 ~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~~~~~~l~~~L  320 (360)
                      ...++++..+....|..+++++ +.++.+.|+++.++.++. ..+..-+.++.-+.-++...+++.+   +.++.+...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~---~~~~~~~~~~   76 (162)
T PF01554_consen    2 IALMQLLQVLGFIIDTIFVGRL-GPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYK---RAKKVVRQGL   76 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHCC-TTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTT---TCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH-hhhcccccccccceeeccccccccc---cccccccccc
Confidence            4567888888899999999999 999999999999998874 4467777888888888777665444   4445666678


Q ss_pred             HHHHHHHHHHHHhcccChHHHHHH
Q 018169          321 KLVLLIGMFFIELKFSLPIYEFNF  344 (360)
Q Consensus       321 ~~~~~lgl~~~~~G~~~s~~ll~~  344 (360)
                      +....++++...+....++++.++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~  100 (162)
T PF01554_consen   77 LLSLIIGLLLSLVLLLFSEFILSL  100 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCHCT
T ss_pred             ccchhcccchhhhhhhHHHHHHHH
Confidence            888888887777766667776665

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PRK10189 MATE family multidrug exporter; Provisional

Probab=89.63  E-value=0.87  Score=46.67  Aligned_cols=113  Identities=13%  Similarity=0.205  Sum_probs=86.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchh
Q 018169          229 SYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQK  308 (360)
Q Consensus       229 ~~~~~ll~~~~~~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~  308 (360)
                      .+.|++++++.+...++++..+..=-|.++++++ +.++...+++++++-.+ .-.+..=+....-+.-++....++.  
T Consensus        26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l-G~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~~--  101 (478)
T PRK10189         26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWL-GKEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRDR--  101 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCH--
Confidence            4468999999999999999999999999999985 56788888888887544 2333334566666777777766543  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHh
Q 018169          309 SKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVV  346 (360)
Q Consensus       309 ~~~~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~ll  346 (360)
                       ++.++.....+.....++++...+....++++++++-
T Consensus       102 -~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~  138 (478)
T PRK10189        102 -RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVA  138 (478)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence             4666777767777777888777777778888888754

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=89.57  E-value=1.9  Score=43.62  Aligned_cols=110  Identities=20%  Similarity=0.224  Sum_probs=82.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhh
Q 018169          231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  310 (360)
Q Consensus       231 ~~~ll~~~~~~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~  310 (360)
                      .|++++++.+...++++..+.+=-|.+++|++.+.++...+++++++-+...-. +.=+--..-+.-||....++.   +
T Consensus         8 ~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~-~~~~~~g~~~lvsq~~Ga~~~---~   83 (441)
T PRK10367          8 DKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFML-LLFLRMSTTGLTAQAFGAKNP---Q   83 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCH---H
Confidence            378999999999999999999999999999987777788888887765554322 222444555566666655433   4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Q 018169          311 KIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNF  344 (360)
Q Consensus       311 ~~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~  344 (360)
                      +.++.+...+.....++++...++....++++++
T Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~  117 (441)
T PRK10367         84 ALARALVQPLLLALGAGALIALLRTPLIDLALHI  117 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667777777788888887777877777887765

>TIGR01695 mviN integral membrane protein MviN

Probab=87.80  E-value=33  Score=34.66  Aligned_cols=159  Identities=11%  Similarity=0.031  Sum_probs=79.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHH---hcccCCCCccchhhH
Q 018169           12 LSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACM---RADIKCDGASREENA   88 (360)
Q Consensus        12 ~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~l---r~~~~~~~~~~~~~~   88 (360)
                      ..+-..+....++...+.+.+-+ .+.+.++++..|..+.+..+.......+.- ++..+..   .+..++   +|.+..
T Consensus       225 ~l~~~~p~~~~~~~~~~~~~id~-~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~-~i~~~~~P~~s~~~~~---~~~~~~  299 (502)
T TIGR01695       225 FLKLFLPTTLGSSASQITLLINT-ALASFLEIGSVSALYYANRIYQLPLGIFGI-SLSTVLLPKLSRHASE---GNWNEL  299 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc---CCHHHH
Confidence            44444456666777766666655 458899998888777654433221111221 3343332   111111   111122


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHhh-ccccC----C--ch---hhHHHHHHHHHHHHhhhhhHHHHHHHhHhHHH
Q 018169           89 AKLLKVA-WLTLPLGIFITIGACFFVLWWQ-GLSYS----N--PY---AQAIFINGFACVLELLAEPLYILSQNLLLLRL  157 (360)
Q Consensus        89 ~~~~n~a-wl~i~~g~~~~~~~~~~~~~~~-~~~~~----~--~~---~~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~  157 (360)
                      ++..+.+ .....+++++++.+... .-+. ...++    +  .+   ...+.+++++.+..++..+.....+-.-+.+.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~  378 (502)
T TIGR01695       300 RDLLNQGIRLSLLLTIPSSFGLLIL-SIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT  378 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence            3333322 22233333333332221 1111 11122    1  12   24567788888888888887766666566676


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 018169          158 RLVVETVATFSRCFTMCIL  176 (360)
Q Consensus       158 r~~~E~~a~~~~~~~~v~l  176 (360)
                      -...+....+++....+.+
T Consensus       379 ~~~~~~~~~~i~i~l~~~l  397 (502)
T TIGR01695       379 PFINSVISVVLNALLSLLL  397 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            7777777766666655544

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=86.07  E-value=1.4  Score=37.19  Aligned_cols=83  Identities=17%  Similarity=0.218  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHh---cccCCCCccchhhHHHHH-HHH
Q 018169           20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMR---ADIKCDGASREENAAKLL-KVA   95 (360)
Q Consensus        20 i~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~lr---~~~~~~~~~~~~~~~~~~-n~a   95 (360)
                      ++.++...+...+.+.++.|+ +|++.+..++...+......+.  .|+..+...   +..++++   .++.++.+ ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~~~~~~~~~~--~g~~~a~~~~~s~~~G~~~---~~~~~~~~~~~~   76 (162)
T PF01554_consen    3 ALMQLLQVLGFIIDTIFVGRL-GPEALAAYGIASSIFSILFMLI--FGLATALQILISQNIGAGD---YKRAKKVVRQGL   76 (162)
T ss_dssp             HHHHHHHHHHHHHHHHCCHCC-TTCCCCHCCHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCSSS---TTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhhc--ccccccccceeeccccccc---cccccccccccc
Confidence            345666777777777777777 9999998888766544443322  477766553   3332221   11222233 333


Q ss_pred             HHHHHHHHHHHHH
Q 018169           96 WLTLPLGIFITIG  108 (360)
Q Consensus        96 wl~i~~g~~~~~~  108 (360)
                      ++++..|++++++
T Consensus        77 ~~~~~~~~~~~~~   89 (162)
T PF01554_consen   77 LLSLIIGLLLSLV   89 (162)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             ccchhcccchhhh
Confidence            4455666666554

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=84.60  E-value=5  Score=40.83  Aligned_cols=110  Identities=14%  Similarity=0.024  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhhH
Q 018169          232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK  311 (360)
Q Consensus       232 ~~ll~~~~~~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~~  311 (360)
                      |++++++.+...+++...+..=.|.++++++ +.++++.++++..+-+... .+..-+-.+.-+.-|+....++.   ++
T Consensus        10 k~il~~a~P~~~~~~~~~~~~~~d~~~v~~l-g~~alAa~~i~~~i~~~~~-~~~~gl~~~~~~i~aq~~Ga~~~---~~   84 (464)
T PRK00187         10 KAILRLAGPLIASQLAHMLMVFTDTLMMGRL-GPEALAGGGLGAASYSFVS-IFCVGVIAAVGTLVAIRHGAGDI---EG   84 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCh---hh
Confidence            7899999999999999999999999999996 5678889999888766543 44455667777888888776544   36


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHhcC
Q 018169          312 IGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVVKG  348 (360)
Q Consensus       312 ~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~llG~  348 (360)
                      .++.+..-+.....++++...+.. .+++++++ +|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l-~~~  119 (464)
T PRK00187         85 ATRLAQAGLWLAWLLALVAALLLW-NLKPLLLL-FGQ  119 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-cCC
Confidence            667776677777777766655433 56787775 454

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=81.03  E-value=58  Score=31.87  Aligned_cols=211  Identities=10%  Similarity=0.045  Sum_probs=106.6

Q ss_pred             HHHHHHHHHhhChh-----hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccchhhHHHHHHHHHHH-HHHHHH
Q 018169           31 FVFNSWIVRHLTEA-----DYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLT-LPLGIF  104 (360)
Q Consensus        31 F~~n~iL~R~LsP~-----~fGi~av~l~l~~~tvlflsre~~r~a~lr~~~~~~~~~~~~~~~~~~n~awl~-i~~g~~  104 (360)
                      =+.|--++|...++     .|| +|..+.++..+- +..-+-+..+.++++++.             .-+|.. +..|+.
T Consensus        32 qiiNagLAr~~e~~vetLAsfg-lA~sL~lf~~sp-~~~~~~igl~~V~s~rsr-------------r~~vl~~~vag~v   96 (345)
T PF07260_consen   32 QIINAGLARVQEDPVETLASFG-LAYSLMLFFASP-LSMFHHIGLVFVNSKRSR-------------RKAVLCMAVAGAV   96 (345)
T ss_pred             HHHHHHHhhccchHHHHHHHHH-HHHHHHHHHhCh-hhhhHHHHHHHhcchhhh-------------HHHHHHHHHHHHH
Confidence            36788899854333     466 455555444443 223357777777775432             113331 233544


Q ss_pred             HHHHHHHHHHHhh--cc-----ccCCch-----hhHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 018169          105 ITIGACFFVLWWQ--GL-----SYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFT  172 (360)
Q Consensus       105 ~~~~~~~~~~~~~--~~-----~~~~~~-----~~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~~E~~a~~~~~~~  172 (360)
                      .+.+..++ .+.+  +.     ...+|.     ..+.....+=++++++..-+.-+.-|+ +...-+..+..+.++.-++
T Consensus        97 ~avi~~LI-a~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~-r~s~iV~~aSI~~v~~qvV  174 (345)
T PF07260_consen   97 AAVIHLLI-AWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKH-RHSWIVGSASIADVIAQVV  174 (345)
T ss_pred             HHHHHHHH-HhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc-cceeEeehHHHHHHHHHHH
Confidence            44332222 1111  00     112221     245666777777777777775444443 3333333444443333333


Q ss_pred             HHHHHHhc--cCch----hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCcccC---cccccHHHHHHHHHHHH
Q 018169          173 MCILIVKQ--YEME----KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGN---MMSYDKQLANMCTLFTF  243 (360)
Q Consensus       173 ~v~l~~~~--~~~~----a~~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~~~---~~~~~~~ll~~~~~~~~  243 (360)
                      .+......  +..+    ++++.-.|..+..-++.++|+.-.        .+..|.+++.   ....-+++++|.+.+..
T Consensus       175 ~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i--------~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~  246 (345)
T PF07260_consen  175 LVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSI--------HDIIPQLSGLEKGDSATLQRMLKFWWPLAL  246 (345)
T ss_pred             HHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhccccCCcccCCChhHHHHHHHHHHHHH
Confidence            33222211  1112    224555566665444446776321        2334555332   22333789999999998


Q ss_pred             HHHHHHHHhhhceeeeEeccCCC
Q 018169          244 QSFRKLLLQEGEKLVLVWLDTPY  266 (360)
Q Consensus       244 qsi~k~lltegDk~vl~~~~~~~  266 (360)
                      .....+..+--=++.+++-.+-+
T Consensus       247 ~~~tq~~SrplVnl~vsR~l~gs  269 (345)
T PF07260_consen  247 VLATQRISRPLVNLFVSRDLSGS  269 (345)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCc
Confidence            88888777777777777755433

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.58
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	95.7

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.58  E-value=2.6e-13  Score=133.96  Aligned_cols=333  Identities=12%  Similarity=0.038  Sum_probs=216.2

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccchhhH
Q 018169            9 STSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENA   88 (360)
Q Consensus         9 ~~~~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~lr~~~~~~~~~~~~~~   88 (360)
                      -+++.+.+.++++.++...+.+++-+.++.| ++|+++|.+++...+.. ....+. .++..+..+.-......+|++..
T Consensus        11 ~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~-~~~~~~-~g~~~~~~~~is~~~g~~~~~~~   87 (460)
T 3mkt_A           11 ASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWL-PSILFG-VGLLMALVPVVAQLNGAGRQHKI   87 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHH-HHHHHH-HHHHHHHGGGCTTTTSSSSTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHcCCChhHH
Confidence            3567888889999999999999999999999 89999999998877533 333333 47777776532222112222334


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHhh-ccccCCch--h---hHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHHH
Q 018169           89 AKLLKVAWL-TLPLGIFITIGACFFVLWWQ-GLSYSNPY--A---QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVV  161 (360)
Q Consensus        89 ~~~~n~awl-~i~~g~~~~~~~~~~~~~~~-~~~~~~~~--~---~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~~  161 (360)
                      ++..+.+.. .+..+++++++ ..+ ..+. .....++.  .   ..+.+++.+.+...+........|-+-+.+.-...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  165 (460)
T 3mkt_A           88 PFEVHQGLILALLVSVPIIAV-LFQ-TQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI  165 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHH-HHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHh-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            455555543 44555554432 111 2221 11122332  1   23455666777777777776667777778888888


Q ss_pred             HHHHHHHHHHHHHHHHHh-cc-CchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCcccCcccccHHHHHHHH
Q 018169          162 ETVATFSRCFTMCILIVK-QY-EMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCT  239 (360)
Q Consensus       162 E~~a~~~~~~~~v~l~~~-~~-~~~a~~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~~~~~~~~~~ll~~~~  239 (360)
                      ...+.+++.+..+.++.. .. ..+++.+.+++..+..+...+.++.+..+....+..+..+...+.+...-|++++++.
T Consensus       166 ~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  245 (460)
T 3mkt_A          166 GFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF  245 (460)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhh
Confidence            888888888887776543 10 1245555555555543333222222222111100000111100112233479999999


Q ss_pred             HHHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhhHHHHHHHHH
Q 018169          240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA  319 (360)
Q Consensus       240 ~~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~~~~~~l~~~  319 (360)
                      +.+.+++...+....|+.+++.+ +.++.|.|++++++.+++. .+...+..+..|..++...+++++   +.++.+...
T Consensus       246 p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~~~---~~~~~~~~~  320 (460)
T 3mkt_A          246 PVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTK---GAAIAANVG  320 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCC---TTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHH---HHHHHHHHH
Confidence            99999999999999999999999 8999999999999999887 788889999999999998765444   344555557


Q ss_pred             HHHHHHHHHHHHHhcccChHHHHHHHhcCCcC
Q 018169          320 LKLVLLIGMFFIELKFSLPIYEFNFVVKGICL  351 (360)
Q Consensus       320 L~~~~~lgl~~~~~G~~~s~~ll~~llG~kW~  351 (360)
                      ++....+++++...-...+++++++..+++..
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~  352 (460)
T 3mkt_A          321 LMTGLATACITALLTVLFREQIALLYTENQVV  352 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            77777777776666666799999987776643

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=95.70  E-value=0.87  Score=43.73  Aligned_cols=159  Identities=13%  Similarity=-0.027  Sum_probs=91.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHh----c--ccCCCCcc
Q 018169           10 TSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMR----A--DIKCDGAS   83 (360)
Q Consensus        10 ~~~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~lr----~--~~~~~~~~   83 (360)
                      ++..+-.......++...+...+.|.++.+. ++++.|..++...+..... .+. .++..+..-    .  +++.++. 
T Consensus       238 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~-~~~~~a~~p~i~~~~g~~~~~~~-  313 (460)
T 3mkt_A          238 IRLFRLGFPVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFP-MSIGAAVSIRVGHKLGEQDTKGA-  313 (460)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHSSCCCTT-
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHcCCCHHHH-
Confidence            3455656677777887777777777777666 9999998888776543333 222 256555541    1  1111111 


Q ss_pred             chhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh-hccccCCch-----hhHHHHHHHHHHHHhhhhhHHHHHHHhHhHH
Q 018169           84 REENAAKLLKV-AWLTLPLGIFITIGACFFVLWW-QGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLR  156 (360)
Q Consensus        84 ~~~~~~~~~n~-awl~i~~g~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~ls~iie~l~eP~~~~~qr~l~~~  156 (360)
                           ++..+. ...+..+++++++++..+ ..+ .....+|+.     ...+.+++++.++.++..+.....|-.-+.+
T Consensus       314 -----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~  387 (460)
T 3mkt_A          314 -----AIAANVGLMTGLATACITALLTVLF-REQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMT  387 (460)
T ss_dssp             -----TTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHH
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence                 112222 222333444444433322 111 123334432     2466888899999999988877777777777


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHH
Q 018169          157 LRLVVETVAT-FSRCFTMCILIV  178 (360)
Q Consensus       157 ~r~~~E~~a~-~~~~~~~v~l~~  178 (360)
                      .-......+. +++....+.+..
T Consensus       388 ~~~~~~~~~~~~~~i~l~~~l~~  410 (460)
T 3mkt_A          388 AIFHRTFISYWVLGLPTGYILGM  410 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777777766 666666665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00