Citrus Sinensis ID: 018172
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | 2.2.26 [Sep-21-2011] | |||||||
| Q9S7N2 | 391 | Tryptophan aminotransfera | yes | no | 0.958 | 0.882 | 0.592 | 1e-124 | |
| Q9LR29 | 388 | Tryptophan aminotransfera | no | no | 0.952 | 0.884 | 0.561 | 1e-113 | |
| Q94A02 | 440 | Tryptophan aminotransfera | no | no | 0.944 | 0.772 | 0.553 | 1e-107 | |
| Q9FE98 | 457 | Tryptophan aminotransfera | no | no | 0.938 | 0.739 | 0.397 | 2e-69 | |
| Q93Z38 | 463 | Tryptophan aminotransfera | no | no | 0.944 | 0.734 | 0.380 | 4e-68 | |
| Q01594 | 486 | Alliin lyase 1 OS=Allium | N/A | no | 0.930 | 0.689 | 0.351 | 1e-55 | |
| Q41233 | 473 | Alliin lyase 2 OS=Allium | N/A | no | 0.930 | 0.708 | 0.349 | 2e-55 | |
| P31756 | 447 | Alliin lyase (Fragment) O | N/A | no | 0.938 | 0.756 | 0.343 | 2e-55 | |
| P31757 | 479 | Alliin lyase OS=Allium ce | N/A | no | 0.938 | 0.705 | 0.343 | 7e-55 | |
| Q8TVG3 | 391 | Histidinol-phosphate amin | yes | no | 0.533 | 0.491 | 0.264 | 1e-06 |
| >sp|Q9S7N2|TAA1_ARATH Tryptophan aminotransferase 1 OS=Arabidopsis thaliana GN=TAA1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 445 bits (1145), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/353 (59%), Positives = 266/353 (75%), Gaps = 8/353 (2%)
Query: 2 AFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRH 61
A+E +WRK+GD+CT+ I G DLMSY SDM N+CWFL PEL +AI +LH VV NA ++ R+
Sbjct: 34 AYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRY 93
Query: 62 IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTF 121
IV+GTGSTQL QAA++ALSS +P+SVV+AAP+YS Y ET Y+RSG+YKW+GDA F
Sbjct: 94 IVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWGF 153
Query: 122 DKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181
DK G YIE+V SPNNPDGTIRE V+ + + E K+IHD AYYWP YTPIT DHDIM
Sbjct: 154 DK-KGPYIELVTSPNNPDGTIRETVVNRPD-DDEAKVIHDFAYYWPHYTPITRRQDHDIM 211
Query: 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD--- 238
LFT SK TGHAGSRIGWALVKD EVA+KM +I + SIGVSKESQ+R AKIL ++ +
Sbjct: 212 LFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCK 271
Query: 239 ---DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLE 295
+ NFF+YGR +M RW LR+V+++S F LP+YP +CN+ GK S+P FAWL
Sbjct: 272 SESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLG 331
Query: 296 SKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQ 348
+KE+ D LR ++M+R G R G+D K+ RVSMLSRE++FN+FLERL+ ++
Sbjct: 332 TKEETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMK 384
|
L-tryptophan aminotransferase involved in auxin (IAA) biosynthesis. Can convert L-tryptophan and pyruvate to indole-3-pyruvic acid (IPA) and alanine. Catalyzes the first step in IPA branch of the auxin biosynthetic pathway. Required for auxin production to initiate multiple change in growth in response to environmental and developmental cues. It is also active with phenylalanine, tyrosine, leucine, alanine, methionine and glutamine. Both TAA1 and TAR2 are required for maintaining proper auxin levels in roots, while TAA1, TAR1 and TAR2 are required for proper embryo patterning. Involved in the maintenance of the root stem cell niches and required for shade avoidance. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 2EC: 7 |
| >sp|Q9LR29|TAR1_ARATH Tryptophan aminotransferase-related protein 1 OS=Arabidopsis thaliana GN=TAR1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/351 (56%), Positives = 247/351 (70%), Gaps = 8/351 (2%)
Query: 2 AFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRH 61
AF+ +W K D+CT+VI DLMSY SD NVCWFL PEL +AI LH + NA ++ R+
Sbjct: 35 AFQEYWMKKKDRCTVVIPAWDLMSYFSDTKNVCWFLEPELEKAIKALHGAIGNAATEERY 94
Query: 62 IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTF 121
IV+GTGS+QL QAAL+ALSS +P+S+V+A PYYS Y E YL+S LYKW+GDA TF
Sbjct: 95 IVVGTGSSQLCQAALFALSSLSEVKPVSIVAAVPYYSTYVEEASYLQSTLYKWEGDARTF 154
Query: 122 DKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181
DK G YIE+V SPNNPDG +RE V VNR GK+IHDLAYYWP YTPIT DHD+M
Sbjct: 155 DK-KGPYIELVTSPNNPDGIMREPV---VNRREGGKVIHDLAYYWPHYTPITRRQDHDLM 210
Query: 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD--- 238
LFT SK TGHAGSRIGWALVKD EVA+KM ++ + SIGVSKESQ RA IL ++
Sbjct: 211 LFTFSKITGHAGSRIGWALVKDIEVAKKMVHYLTINSIGVSKESQTRATTILNELTKTCR 270
Query: 239 -DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297
+FFEYG M RW LR+V+ F LP YP ++CNF GK ++ P FAWL K
Sbjct: 271 TQSESFFEYGYEKMKSRWERLREVVESGDAFTLPNYPQDFCNFFGKTLSTSPAFAWLGYK 330
Query: 298 EDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQ 348
E+ D LL+ ++++ RGG R G + +Y RVSMLSR++ F++ L+RL+ I+
Sbjct: 331 EERDLGSLLKEKKVLTRGGDRCGCNKRYVRVSMLSRDDDFDVSLQRLATIK 381
|
Probably involved in auxin production. TAA1, TAR1 and TAR2 are required for proper embryo patterning. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 EC: 7 |
| >sp|Q94A02|TAR2_ARATH Tryptophan aminotransferase-related protein 2 OS=Arabidopsis thaliana GN=TAR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/352 (55%), Positives = 244/352 (69%), Gaps = 12/352 (3%)
Query: 2 AFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRH 61
+E +W++ G+ TMVI G +SY SD N+CWFL PELA+ I +H VV NAV+ R
Sbjct: 88 VYERYWQENGEVTTMVIPGWQSLSYFSDENNLCWFLEPELAKEIVRVHKVVGNAVTQDRF 147
Query: 62 IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTF 121
IV+GTGSTQLYQAALYALS PI+VVSA PYYS YP TD L+SGLY+W GDA T+
Sbjct: 148 IVVGTGSTQLYQAALYALSPHDDSGPINVVSATPYYSTYPLITDCLKSGLYRWGGDAKTY 207
Query: 122 DKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181
K +G YIE+V SPNNPDG +RE+V+ S EG LIHDLAYYWPQYTPIT ADHD+M
Sbjct: 208 -KEDGPYIELVTSPNNPDGFLRESVV----NSTEGILIHDLAYYWPQYTPITSPADHDVM 262
Query: 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYP 241
LFT SK TGHAG RIGWALVKD E ARKM +IEL +IGVSK+SQLR AK+L +VSD
Sbjct: 263 LFTASKSTGHAGIRIGWALVKDRETARKMIEYIELNTIGVSKDSQLRVAKVLKVVSDSCG 322
Query: 242 N-----FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES 296
N FF++ M ERW +L+Q + + F +P++ + CNF G+ P FAW +
Sbjct: 323 NVTGKSFFDHSYDAMYERWKLLKQAAKDTKRFSVPDFVSQRCNFFGRVFEPQPAFAWFKC 382
Query: 297 KED-EDCEKLLRAE-RIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSA 346
+E DCEK LR E +I+ + G+ FG + R+SML R+ FNIFL R+++
Sbjct: 383 EEGIVDCEKFLREEKKILTKSGKYFGDELSNVRISMLDRDTNFNIFLHRITS 434
|
Involved in auxin production. Both TAA1 and TAR2 are required for maintaining proper auxin levels in roots, while TAA1, TAR1 and TAR2 are required for proper embryo patterning. Involved in the maintenance of the root stem cell niches. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 EC: 7 |
| >sp|Q9FE98|TAR3_ARATH Tryptophan aminotransferase-related protein 3 OS=Arabidopsis thaliana GN=TAR3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (672), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 140/352 (39%), Positives = 205/352 (58%), Gaps = 14/352 (3%)
Query: 1 MAFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGR 60
+ E FW + ++ +V SG MSY F+ EL + I LH+VV NAV+D R
Sbjct: 98 LFLEPFWIRKAEESAVVESGWHRMSY--TFNGYGLFMSAELEKIIRKLHNVVGNAVTDNR 155
Query: 61 HIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANT 120
I+ G G+TQL A+++ALS P +V++ PYY+ Y + D+ S K++GDA+
Sbjct: 156 FIIFGAGATQLLAASVHALSQTNSLSPSRLVTSVPYYNLYKQQADFFNSTNLKFEGDASA 215
Query: 121 FDKNN-----GAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGA 175
+ ++ IE+V SPNNPDG ++ AVL N K IHD AYYWP ++PIT
Sbjct: 216 WKRSERNDDIKQVIEIVTSPNNPDGKLKRAVLDGPNV----KYIHDYAYYWPYFSPITRQ 271
Query: 176 ADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGI 235
AD D+ LF+LSK TGHAGSR GWALVK+ V KM +I L S+GVS+++QLRA ++L +
Sbjct: 272 ADEDLSLFSLSKTTGHAGSRFGWALVKEKTVYEKMKIYISLSSMGVSRDTQLRALQLLKV 331
Query: 236 VSDDYPN-FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWL 294
V D N F +G + +RW +L ++ S F L EYCN+ K P +AW+
Sbjct: 332 VIGDGGNEIFRFGYGTLKKRWEILNKIFSMSTRFSLETIKPEYCNYFKKVREFTPSYAWV 391
Query: 295 --ESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERL 344
E ED DC ++ +A +I R G FG+D ++ R+S++ ++ F+ + L
Sbjct: 392 KCERPEDTDCYEIFKAAKITGRNGEMFGSDERFVRLSLIRSQDDFDQLIAML 443
|
Probable aminotransferase. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q93Z38|TAR4_ARATH Tryptophan aminotransferase-related protein 4 OS=Arabidopsis thaliana GN=TAR4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 258 bits (660), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 136/357 (38%), Positives = 207/357 (57%), Gaps = 17/357 (4%)
Query: 1 MAFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGR 60
+ E FW + ++ +++SG MSY+ + G ++ EL + I LH VV NAV+D R
Sbjct: 99 LFLEPFWMRQAERSAILVSGWHRMSYIYEDGT---YVSRELEKVIRKLHSVVGNAVTDNR 155
Query: 61 HIVIGTGSTQLYQAALYALS--SPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDA 118
++ G+G+TQL AA++ALS + P ++++ PYY+ Y + ++ S K++G+A
Sbjct: 156 FVIFGSGTTQLLAAAVHALSLTNSSVSSPARLLTSIPYYAMYKDQAEFFDSAHLKFEGNA 215
Query: 119 NTFDK-----NNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPIT 173
+ + + N IEVV SPNNPDG ++ AVL N K +HD AYYWP ++PIT
Sbjct: 216 SAWKQSGRNDNITQVIEVVTSPNNPDGKLKRAVLDGPNV----KTLHDYAYYWPHFSPIT 271
Query: 174 GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKIL 233
D D+ LF+LSK TGHAGSR GW LVKD + KM RFI L S+GVSKE+QL ++L
Sbjct: 272 HPVDEDLSLFSLSKTTGHAGSRFGWGLVKDKAIYEKMDRFIRLTSMGVSKETQLHVLQLL 331
Query: 234 GIVSDDYPN-FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFA 292
+V D N F +G + +RW L ++ S F L EYCN+ K P +A
Sbjct: 332 KVVVGDGGNEIFSFGYGTVKKRWETLNKIFSMSTRFSLQTIKPEYCNYFKKVREFTPSYA 391
Query: 293 WL--ESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAI 347
W+ E ED +C ++ RA +I R G FG++ ++ R+S++ ++ F+ + L +
Sbjct: 392 WVKCERPEDTNCYEIFRAAKITGRNGNVFGSEERFVRLSLIRSQDDFDQLIAMLKKL 448
|
Probable aminotransferase. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q01594|ALLN1_ALLSA Alliin lyase 1 OS=Allium sativum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 127/361 (35%), Positives = 191/361 (52%), Gaps = 26/361 (7%)
Query: 1 MAFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGR 60
+ E +W++ + +++S MSY V F+ EL + I LH VV NA + R
Sbjct: 105 LFLEEYWKQHKEASAVLVSPWHRMSYF--FNPVSNFISFELEKTIKELHEVVGNAAAKDR 162
Query: 61 HIVIGTGSTQLYQAALYALS-----SPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWD 115
+IV G G TQL + +LS +P PE VV+ AP+Y + +T Y Y W
Sbjct: 163 YIVFGVGVTQLIHGLVISLSPNMTATPDAPES-KVVAHAPFYPVFREQTKYFNKKGYVWA 221
Query: 116 GDANTFDK--NNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPIT 173
G+A + N YIE+V SPNNP+G +R AV+ K I+D+ YYWP YTPI
Sbjct: 222 GNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKGC------KSIYDMVYYWPHYTPIK 275
Query: 174 GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKIL 233
AD DI+LFT+SK TGH+GSR GWAL+KD V + ++ + G +E+QLR+ K+L
Sbjct: 276 YKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVL 335
Query: 234 GIV-------SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPL-EYCNFTGKFT 285
V + +G + + ERW + ++ QS F E P EYCN+ +
Sbjct: 336 KEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMR 395
Query: 286 NSHPGFAWL--ESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLER 343
P +AW+ E +ED+DC + + RI + G F A ++Y R+S++ ++ F+ +
Sbjct: 396 PPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYY 455
Query: 344 L 344
L
Sbjct: 456 L 456
|
Able to cleave the C-S bond of sulfoxide derivatives of Cys to produce allicin, thus giving rise to all sulfur compounds which are responsible for most of the properties of garlic, such as the specific smell and flavor as well as the health benefits like blood lipid or blood pressure lowering. Allium sativum (taxid: 4682) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q41233|ALLN2_ALLSA Alliin lyase 2 OS=Allium sativum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 191/361 (52%), Gaps = 26/361 (7%)
Query: 1 MAFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGR 60
+ E +W++ + +++S MSY V F+ EL + I LH VV NA + R
Sbjct: 92 LFLEEYWKQHKEASAVLVSPWHRMSYF--FNPVSNFISFELEKTIKELHEVVGNAAAKDR 149
Query: 61 HIVIGTGSTQLYQAALYALS-----SPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWD 115
+IV G G TQL + +LS +P PE VV+ AP+Y + +T Y Y W
Sbjct: 150 YIVFGVGVTQLIHGLVISLSPNMTATPDAPES-KVVAHAPFYPVFREQTKYFDKKGYVWA 208
Query: 116 GDANTFDK--NNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPIT 173
G+A + N YIE+V SPNNP+G +R AV+ K I+D+ YYWP YTPI
Sbjct: 209 GNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKGC------KSIYDMVYYWPHYTPIK 262
Query: 174 GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKIL 233
AD DI+LFT+SK TGH+GSR GWAL+KD V + ++ + G +E+QLR+ K+L
Sbjct: 263 YKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVL 322
Query: 234 GIV-------SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPL-EYCNFTGKFT 285
+ + +G + + ERW + ++ QS F E P EYCN+ +
Sbjct: 323 KEIVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMR 382
Query: 286 NSHPGFAWL--ESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLER 343
P +AW+ E +ED+DC + + RI + G F A ++Y R+S++ ++ F+ +
Sbjct: 383 PPSPSYAWVNCEWEEDKDCYQTFQNGRINTQSGVGFEASSRYVRLSLIKTQDDFDQLMYY 442
Query: 344 L 344
L
Sbjct: 443 L 443
|
Able to cleave the C-S bond of sulfoxide derivatives of Cys to produce allicin, thus giving rise to all sulfur compounds which are responsible for most of the properties of garlic, such as the specific smell and flavor as well as the health benefits like blood lipid or blood pressure lowering. Allium sativum (taxid: 4682) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 4 |
| >sp|P31756|ALLN_ALLCG Alliin lyase (Fragment) OS=Allium cepa var. aggregatum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/364 (34%), Positives = 195/364 (53%), Gaps = 26/364 (7%)
Query: 1 MAFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGR 60
+ E +W++ + +++SG SY V F+ EL + I LH +V NA + R
Sbjct: 69 LFLEEYWQQHKENSAVLVSGWHRTSYF--FNPVSNFISFELEKTIKELHEIVGNAAAKDR 126
Query: 61 HIVIGTGSTQLYQAALYALS-----SPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWD 115
+IV G G TQL + +LS +P P+ VV+ APYY + +T Y Y+W
Sbjct: 127 YIVFGVGVTQLIHGLVISLSPNMTATPCAPQS-KVVAHAPYYPVFREQTKYFDKKGYEWK 185
Query: 116 GDANTFDKNNG--AYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPIT 173
G+A + + +IE+V SPNNP+G +R V+ K I+D+ YYWP YTPI
Sbjct: 186 GNAADYVNTSTPEQFIEMVTSPNNPEGLLRHEVIKGC------KSIYDMVYYWPHYTPIK 239
Query: 174 GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKIL 233
AD DIMLFT+SK TGH+GSR GWAL+KD V K+ ++ + G S+E+QLR+ KIL
Sbjct: 240 YKADEDIMLFTMSKYTGHSGSRFGWALIKDETVYNKLLNYMTKNTEGTSRETQLRSLKIL 299
Query: 234 GIVS-------DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPL-EYCNFTGKFT 285
V+ + +G + + ERW + ++ +S F + P EYCN+ +
Sbjct: 300 KEVTAMIKTQKGTMRDLNTFGFQKLRERWVNITALLDKSDRFSYQKLPQSEYCNYFRRMR 359
Query: 286 NSHPGFAWL--ESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLER 343
P +AW+ E +ED+DC + + RI + G F A ++Y R+S++ ++ F+ +
Sbjct: 360 PPSPSYAWVKCEWEEDKDCYQTFQNGRINTQSGEGFEAGSRYVRLSLIKTKDDFDQLMYY 419
Query: 344 LSAI 347
L +
Sbjct: 420 LKIM 423
|
Allium cepa var. aggregatum (taxid: 28911) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 4 |
| >sp|P31757|ALLN_ALLCE Alliin lyase OS=Allium cepa PE=1 SV=2 | Back alignment and function description |
|---|
Score = 214 bits (545), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 125/364 (34%), Positives = 195/364 (53%), Gaps = 26/364 (7%)
Query: 1 MAFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGR 60
+ E +W++ + +++SG MSY V F+ EL + I LH +V NA + R
Sbjct: 101 LFLEEYWQQHKENSAVLVSGWHRMSYF--FNPVSNFISFELEKTIKELHEIVGNAAAKDR 158
Query: 61 HIVIGTGSTQLYQAALYALS-----SPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWD 115
+IV G G TQL + +LS +P P+ VV+ APYY + +T Y Y+W
Sbjct: 159 YIVFGVGVTQLIHGLVISLSPNMTATPCAPQS-KVVAHAPYYPVFREQTKYFDKKGYEWK 217
Query: 116 GDANTFDKNNG--AYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPIT 173
G+A + + +IE+V SPNNP+G +R V+ K I+ + YYWP YTPI
Sbjct: 218 GNAADYVNTSTPEQFIEMVTSPNNPEGLLRHEVIKGC------KSIYYMVYYWPHYTPIK 271
Query: 174 GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKIL 233
AD DIMLFT+SK TGH+GSR GWAL+KD V K+ ++ + G S+E+QLR+ KIL
Sbjct: 272 YKADEDIMLFTMSKYTGHSGSRFGWALIKDETVYNKLLNYMTKNTEGTSRETQLRSLKIL 331
Query: 234 GIV-------SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPL-EYCNFTGKFT 285
V + + +G + + ERW + ++ +S F + P EYCN+ +
Sbjct: 332 KEVIAMVKTQNGTMRDLNTFGFQKLRERWVNITALLDKSDRFSYQKLPQSEYCNYFRRMR 391
Query: 286 NSHPGFAWL--ESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLER 343
P +AW+ E +ED+DC + + RI + G F A ++Y R+S++ ++ F+ +
Sbjct: 392 PPSPSYAWVKCEWEEDKDCYQTFQNGRINTQSGEGFEAGSRYVRLSLIKTKDDFDQLMYY 451
Query: 344 LSAI 347
L +
Sbjct: 452 LKIM 455
|
Allium cepa (taxid: 4679) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q8TVG3|HIS8_METKA Histidinol-phosphate aminotransferase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=hisC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 27/219 (12%)
Query: 61 HIVIG-TGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDAN 119
H+V+G G+ ++ L PG P VV P +SQY + + K D
Sbjct: 109 HLVVGGDGADEIIDVLTRVLVDPGDP----VVIPVPTFSQYGISARACGAEVRKPRFDPE 164
Query: 120 T-FDKNNGAYIEVVN---------SPNNPDGT-IREAVLAKVNRSAEGKLIHDLAYYW-- 166
F+ + + E ++ +PNNP G IRE V+ V G ++ D AY
Sbjct: 165 RGFELDEDSLFEALDREVRLVYLCTPNNPTGNRIRERVVRDVVEECRGVVLIDHAYVEFA 224
Query: 167 -PQYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKES 225
YTP+ D+ ++L T SK G AG+R+G+ + + E+ + R + S+ +
Sbjct: 225 DHDYTPLALEYDNVLVLRTCSKALGLAGARVGYG-IANPELIEHLHRIKPVFSL-----T 278
Query: 226 QLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQ 264
+ AA D ++ E RLM E L + +R+
Sbjct: 279 RPSAAAAEATFRDR--DYIEKSVRLMIESRKYLYRELRK 315
|
Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | ||||||
| 255573979 | 396 | Alliin lyase precursor, putative [Ricinu | 0.947 | 0.861 | 0.687 | 1e-136 | |
| 224102447 | 377 | predicted protein [Populus trichocarpa] | 0.944 | 0.901 | 0.660 | 1e-135 | |
| 224110904 | 365 | predicted protein [Populus trichocarpa] | 0.963 | 0.950 | 0.649 | 1e-134 | |
| 225468650 | 419 | PREDICTED: tryptophan aminotransferase 1 | 0.961 | 0.825 | 0.641 | 1e-127 | |
| 225470601 | 410 | PREDICTED: tryptophan aminotransferase 1 | 0.947 | 0.831 | 0.641 | 1e-126 | |
| 312283061 | 376 | unnamed protein product [Thellungiella h | 0.961 | 0.920 | 0.610 | 1e-125 | |
| 15223183 | 391 | tryptophan aminotransferase [Arabidopsis | 0.958 | 0.882 | 0.592 | 1e-122 | |
| 297838855 | 392 | alliinase C-terminal domain-containing p | 0.952 | 0.875 | 0.598 | 1e-122 | |
| 186972981 | 391 | Chain C, L-Tryptophan Aminotransferase g | 0.958 | 0.882 | 0.589 | 1e-122 | |
| 147862850 | 457 | hypothetical protein VITISV_013176 [Viti | 0.947 | 0.746 | 0.589 | 1e-121 |
| >gi|255573979|ref|XP_002527907.1| Alliin lyase precursor, putative [Ricinus communis] gi|223532682|gb|EEF34464.1| Alliin lyase precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/355 (68%), Positives = 281/355 (79%), Gaps = 14/355 (3%)
Query: 3 FEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHI 62
FE +WRK GDKCTMVISGSDLMSY SD+GNVCWFL P+L++AI LH V NAVSD R+I
Sbjct: 41 FEPYWRKQGDKCTMVISGSDLMSYFSDIGNVCWFLEPQLSDAIKRLHRKVGNAVSDDRYI 100
Query: 63 VIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTF 121
V+GTGSTQLYQAALYAL SS GGPEPISVV AAPYYS Y ETD+LRS LYKW GDA +
Sbjct: 101 VVGTGSTQLYQAALYALASSSGGPEPISVVCAAPYYSSYKEETDFLRSRLYKWAGDAYAY 160
Query: 122 DKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181
DKN YIEVV SPNNPDG IRE V VNR EGK I+DLAYYWPQYT IT AD+DIM
Sbjct: 161 DKNE-PYIEVVTSPNNPDGAIRETV---VNR-GEGKHIYDLAYYWPQYTAITRPADYDIM 215
Query: 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD--- 238
LFT SK TGHAGSRIGWALVK+ EVAR MT+FIE+ SIG+SKESQ+RAAKILG+V++
Sbjct: 216 LFTFSKSTGHAGSRIGWALVKEKEVARMMTKFIEVSSIGISKESQIRAAKILGVVTENCQ 275
Query: 239 -----DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAW 293
+ NFFEYG+ LM+ERW LR++++ S +F LP+YP E+CNF+ K+ S+P FAW
Sbjct: 276 HFGTPESENFFEYGQCLMAERWKKLREIVKNSKIFTLPKYPQEWCNFSEKYIESNPAFAW 335
Query: 294 LESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQ 348
L+ KED DCE LLRA +I+ RGG RFGA Y RVSMLSRE+ FN FLERL AI+
Sbjct: 336 LKYKEDADCEGLLRAHKILTRGGERFGAGRNYVRVSMLSREDAFNQFLERLLAIE 390
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102447|ref|XP_002312680.1| predicted protein [Populus trichocarpa] gi|222852500|gb|EEE90047.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/353 (66%), Positives = 276/353 (78%), Gaps = 13/353 (3%)
Query: 3 FEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHI 62
FE +W+K+GDKCT+VI G DLMSY SD N+CWFL P+L +AI LH VV NAV+DGRHI
Sbjct: 12 FEPYWKKMGDKCTLVIGGCDLMSYFSDSSNICWFLQPQLGDAIKGLHRVVGNAVTDGRHI 71
Query: 63 VIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFD 122
V+GTGSTQL AALYALSSP P+S+V+AAPYYS Y + ++LRSG YKW+GDA+TFD
Sbjct: 72 VVGTGSTQLLMAALYALSSPSASHPVSLVAAAPYYSGYKDQAEFLRSGHYKWEGDAHTFD 131
Query: 123 KNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182
K +G YIEVV SPNNPDGTIREAV+ EGKL++DLAYYWPQYTPIT DHDIML
Sbjct: 132 K-DGPYIEVVTSPNNPDGTIREAVV----NLGEGKLVYDLAYYWPQYTPITHPLDHDIML 186
Query: 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD---- 238
FT SKCTGHAGSRIGWALVKD EVARKMT ++++ SIGVSKESQLRAAKILG++S+
Sbjct: 187 FTFSKCTGHAGSRIGWALVKDKEVARKMTEYMQISSIGVSKESQLRAAKILGVLSEGCQH 246
Query: 239 ----DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWL 294
D NFFEY R+M ER L+ V++ S +F LP++P +YCNFTGK+T+S+P FAWL
Sbjct: 247 FRTADSENFFEYSHRIMRERRESLQNVVKNSKIFSLPKFPQDYCNFTGKYTDSNPAFAWL 306
Query: 295 ESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAI 347
SKED D E LLR +I+ R G RFGAD KY R+SM S E FN+FLERLSAI
Sbjct: 307 HSKEDIDWENLLREHKIIGRSGERFGADPKYVRISMFSPPEAFNLFLERLSAI 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110904|ref|XP_002315677.1| predicted protein [Populus trichocarpa] gi|222864717|gb|EEF01848.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/357 (64%), Positives = 276/357 (77%), Gaps = 10/357 (2%)
Query: 3 FEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHI 62
FE +WRK+GDKCT+VI G DLMSY SD+ N+CWFL P+L +AI LH VV NAV++ RH+
Sbjct: 11 FEPYWRKMGDKCTLVIEGCDLMSYFSDISNICWFLQPQLGDAIKRLHRVVGNAVTEDRHV 70
Query: 63 VIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFD 122
V+GTGSTQL AALYALSSP P+S+V+AAP+YS Y + ++LRSGLYKW+GDA+TFD
Sbjct: 71 VVGTGSTQLLMAALYALSSPADRHPVSLVAAAPFYSGYKEQAEFLRSGLYKWEGDAHTFD 130
Query: 123 KNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182
K +G YIEVV SPNNPDG IREAV VNR EGKL++DLAYYWPQYTPIT DHDIML
Sbjct: 131 K-DGPYIEVVTSPNNPDGAIREAV---VNR-GEGKLVYDLAYYWPQYTPITQPLDHDIML 185
Query: 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD---- 238
FT SKCTGHAGSRIGWALVKD EVARKMT ++++ SIGVSKESQ+RAAKILG++ +
Sbjct: 186 FTFSKCTGHAGSRIGWALVKDKEVARKMTEYMQISSIGVSKESQIRAAKILGVLGEGCRT 245
Query: 239 -DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297
D NFFEY ++ ERW LR V++ S VF LP+YP +YCNFTGK+ +S P FAWL SK
Sbjct: 246 ADSENFFEYSHSILKERWERLRNVVKNSRVFSLPKYPRDYCNFTGKYMDSSPAFAWLHSK 305
Query: 298 EDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGSISN 354
ED D E LR +I+AR G RFGA KY R+SM S E FN+FLERLSAI + N
Sbjct: 306 EDIDWESRLREHKIIARSGERFGASPKYVRISMFSPPEAFNLFLERLSAIIDNTTGN 362
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225468650|ref|XP_002267408.1| PREDICTED: tryptophan aminotransferase 1 [Vitis vinifera] gi|296083493|emb|CBI23462.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/357 (64%), Positives = 268/357 (75%), Gaps = 11/357 (3%)
Query: 3 FEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHI 62
F+ FWR +GDKC + I D MSYL+D G VCWFL EL EAI LH V NAV+D RHI
Sbjct: 52 FKPFWRSVGDKCKVTIDSCDFMSYLTDTGTVCWFLEKELEEAIRQLHRTVGNAVTDDRHI 111
Query: 63 VIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFD 122
++GTGSTQLY AALYAL+SPGGPEP++VVSA PYYS YP ET++L S LYKW GDA TFD
Sbjct: 112 LVGTGSTQLYHAALYALTSPGGPEPVNVVSAVPYYSSYPEETNFLCSALYKWAGDAYTFD 171
Query: 123 KNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182
K G YIE+V PNNPDG +R VNR+ +GKLIHDLAYYWPQYTPIT AD+DIML
Sbjct: 172 K-EGPYIELVTMPNNPDGQVRGPT---VNRN-DGKLIHDLAYYWPQYTPITAQADYDIML 226
Query: 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY-- 240
FT SK GHAGSRIGWA+VKD +VA KMT++IEL SIGVS+ESQ RAAKILG VSD
Sbjct: 227 FTFSKSMGHAGSRIGWAVVKDKDVAIKMTKYIELNSIGVSRESQHRAAKILGAVSDSSQC 286
Query: 241 --PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE 298
NFFEYG+ LM+ERW +R+VI +S +F LP+Y EYC F+G+ T HP FAWL+
Sbjct: 287 IGANFFEYGKSLMAERWTKIREVISRSRLFSLPKYMEEYCQFSGEDTEPHPAFAWLKCNN 346
Query: 299 D-EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGSISN 354
D ED E LR +IM RGG FG+D K+ RVSML EE FN+FLERLS+IQ +I+N
Sbjct: 347 DIEDLEIFLRRYKIMGRGGSLFGSDPKHVRVSMLGDEETFNLFLERLSSIQ-DTITN 402
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470601|ref|XP_002274547.1| PREDICTED: tryptophan aminotransferase 1 [Vitis vinifera] gi|296083423|emb|CBI23376.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/351 (64%), Positives = 264/351 (75%), Gaps = 10/351 (2%)
Query: 3 FEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHI 62
F+ FWR +GDKC + I D MSYL+D+G VCWFL EL EAI LH V NA +D R+I
Sbjct: 52 FKPFWRSVGDKCKVTIDSCDFMSYLTDVGKVCWFLEKELEEAIRQLHRTVGNAATDDRYI 111
Query: 63 VIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFD 122
V+GTGSTQL+QA LYAL+SPGGPE ++VVSA PYYS YP ET++LRS LYKW GDA TFD
Sbjct: 112 VVGTGSTQLFQATLYALTSPGGPESVNVVSAVPYYSSYPEETNFLRSALYKWAGDAYTFD 171
Query: 123 KNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182
K G Y+E+V PNNPDG +R V VNR+ +GKLIHDLAYYWPQYTPIT AD+DIML
Sbjct: 172 K-EGPYLELVTMPNNPDGQVRGPV---VNRN-DGKLIHDLAYYWPQYTPITAQADYDIML 226
Query: 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY-- 240
FT SK TGH GSRIGWA+VKD +VA KMT++IEL SIGVS+ESQ RAAKILG VSD
Sbjct: 227 FTFSKSTGHGGSRIGWAVVKDEDVAIKMTKYIELNSIGVSRESQHRAAKILGAVSDSSQC 286
Query: 241 --PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE 298
NFF+YG+ LM+ERW R+VI +S +F LP+Y EYC F+G+ T HP FAWL+
Sbjct: 287 IGANFFQYGKSLMAERWTKFREVISRSRLFSLPKYMEEYCQFSGEDTEPHPAFAWLKCNN 346
Query: 299 D-EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQ 348
D ED E LR +IM RGGR FG+D K RVSML EE FN+FLERLS+IQ
Sbjct: 347 DIEDLEIFLRRYKIMGRGGRLFGSDPKLVRVSMLGDEETFNLFLERLSSIQ 397
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312283061|dbj|BAJ34396.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/352 (61%), Positives = 266/352 (75%), Gaps = 6/352 (1%)
Query: 2 AFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRH 61
A+E +WRK+GD+CT+ I G DLMSY SD+ N+CWFL PELAEAI LH V NA ++ R+
Sbjct: 26 AYEEYWRKMGDRCTVTIRGWDLMSYFSDVNNLCWFLEPELAEAIKELHGAVGNAATEDRY 85
Query: 62 IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTF 121
IV+GTGSTQL QAA++ALSS G P+SVV+AAP+YS Y ET Y+RSG+YKW+GDA F
Sbjct: 86 IVVGTGSTQLCQAAVHALSSLAGSHPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWGF 145
Query: 122 DKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181
DK G YIE+V SPNNPDGTIRE V+ EGK+IHD AYYWP YTPIT DHDIM
Sbjct: 146 DK-KGPYIELVTSPNNPDGTIRETVVNS-PEDDEGKVIHDFAYYWPHYTPITRRQDHDIM 203
Query: 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD--- 238
LF SK TGHAGSRIGWALVKD EVA+KM +I + SIGVSKESQ+RAAKIL ++ +
Sbjct: 204 LFAFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQIRAAKILKVLKENCE 263
Query: 239 -DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297
+ NFFEYGR +M RW LR+V+++S VF LP+YP YCNF GK S+P FAWL +K
Sbjct: 264 SESDNFFEYGREIMRNRWEKLREVVKESDVFALPKYPEAYCNFFGKTLESYPAFAWLGTK 323
Query: 298 EDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQG 349
E+ D LR +++M+R G R G+D K+ RVSMLSRE++FN+FLERL+ ++
Sbjct: 324 EETDLVSDLRRQKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMKA 375
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15223183|ref|NP_177213.1| tryptophan aminotransferase [Arabidopsis thaliana] gi|75194005|sp|Q9S7N2.1|TAA1_ARATH RecName: Full=Tryptophan aminotransferase 1; AltName: Full=Protein CYTOKININ INDUCED ROOT CURLING 1; AltName: Full=Protein SHADE AVOIDANCE 3; AltName: Full=Protein TRANSPORT INHIBITOR RESPONSE 2; AltName: Full=Protein TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1; AltName: Full=Protein WEAK ETHYLENE INSENSITIVE 8; AltName: Full=Tryptophan transaminase gi|186972979|pdb|3BWN|A Chain A, L-Tryptophan Aminotransferase gi|186972980|pdb|3BWN|B Chain B, L-Tryptophan Aminotransferase gi|186972982|pdb|3BWN|D Chain D, L-Tryptophan Aminotransferase gi|186972983|pdb|3BWN|E Chain E, L-Tryptophan Aminotransferase gi|253722646|pdb|3BWN|F Chain F, L-Tryptophan Aminotransferase gi|12324766|gb|AAG52348.1|AC011663_27 putative alliinase; 99695-97270 [Arabidopsis thaliana] gi|12325049|gb|AAG52476.1|AC010796_15 putative alliinase; 54807-57232 [Arabidopsis thaliana] gi|26449516|dbj|BAC41884.1| putative alliinase [Arabidopsis thaliana] gi|28950959|gb|AAO63403.1| At1g70560 [Arabidopsis thaliana] gi|332196958|gb|AEE35079.1| tryptophan aminotransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/353 (59%), Positives = 266/353 (75%), Gaps = 8/353 (2%)
Query: 2 AFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRH 61
A+E +WRK+GD+CT+ I G DLMSY SDM N+CWFL PEL +AI +LH VV NA ++ R+
Sbjct: 34 AYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRY 93
Query: 62 IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTF 121
IV+GTGSTQL QAA++ALSS +P+SVV+AAP+YS Y ET Y+RSG+YKW+GDA F
Sbjct: 94 IVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWGF 153
Query: 122 DKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181
DK G YIE+V SPNNPDGTIRE V+ + + E K+IHD AYYWP YTPIT DHDIM
Sbjct: 154 DK-KGPYIELVTSPNNPDGTIRETVVNRPD-DDEAKVIHDFAYYWPHYTPITRRQDHDIM 211
Query: 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD--- 238
LFT SK TGHAGSRIGWALVKD EVA+KM +I + SIGVSKESQ+R AKIL ++ +
Sbjct: 212 LFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCK 271
Query: 239 ---DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLE 295
+ NFF+YGR +M RW LR+V+++S F LP+YP +CN+ GK S+P FAWL
Sbjct: 272 SESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLG 331
Query: 296 SKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQ 348
+KE+ D LR ++M+R G R G+D K+ RVSMLSRE++FN+FLERL+ ++
Sbjct: 332 TKEETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMK 384
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297838855|ref|XP_002887309.1| alliinase C-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333150|gb|EFH63568.1| alliinase C-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/356 (59%), Positives = 265/356 (74%), Gaps = 13/356 (3%)
Query: 2 AFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRH 61
A+E +WRK+GD+CT+ I G DLMSY SDM N+CWFL PEL AI +LH V NA ++ R+
Sbjct: 34 AYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEAAIKDLHGAVGNAATEDRY 93
Query: 62 IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTF 121
IV+GTGSTQL QAA++ALSS +P+SVV+AAP+YS Y ET Y+RSG+YKW+GDA F
Sbjct: 94 IVVGTGSTQLCQAAVHALSSLARTQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWGF 153
Query: 122 DKNNGAYIEVVNSPNNPDGTIREAVLAKVNR--SAEGKLIHDLAYYWPQYTPITGAADHD 179
DK G YIE+V SPNNPDGTIRE V VNR E K+IHD AYYWP YTPIT DHD
Sbjct: 154 DK-KGPYIELVTSPNNPDGTIRETV---VNRPDDDEAKVIHDFAYYWPHYTPITRRQDHD 209
Query: 180 IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIV--- 236
IMLFT SK TGHAGSRIGWALVKD EVA+KM +I + SIGVSKESQ+R AKIL ++
Sbjct: 210 IMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILKVLKET 269
Query: 237 ----SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFA 292
SD+ NFF+YGR++M RW LR+V+++S F LP+YP +CN+ GK S+P FA
Sbjct: 270 CNSESDESENFFKYGRKMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFA 329
Query: 293 WLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQ 348
WL +KE+ D LR ++M R G R G+D K+ RVSMLSRE++FN+FLERL+ ++
Sbjct: 330 WLGTKEETDLVSELRRHKVMCRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMK 385
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186972981|pdb|3BWN|C Chain C, L-Tryptophan Aminotransferase gi|224510549|pdb|3BWO|A Chain A, L-Tryptophan Aminotransferase gi|224510550|pdb|3BWO|B Chain B, L-Tryptophan Aminotransferase gi|224510551|pdb|3BWO|C Chain C, L-Tryptophan Aminotransferase gi|224510552|pdb|3BWO|D Chain D, L-Tryptophan Aminotransferase gi|224510553|pdb|3BWO|E Chain E, L-Tryptophan Aminotransferase gi|224510554|pdb|3BWO|F Chain F, L-Tryptophan Aminotransferase | Back alignment and taxonomy information |
|---|
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 208/353 (58%), Positives = 265/353 (75%), Gaps = 8/353 (2%)
Query: 2 AFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRH 61
A+E +WRK+GD+CT+ I G DLMSY SDM N+CWFL PEL +AI +LH VV NA ++ R+
Sbjct: 34 AYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRY 93
Query: 62 IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTF 121
IV+GTGSTQL QAA++ALSS +P+SVV+AAP+YS Y ET Y+RSG+YKW+GDA F
Sbjct: 94 IVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWGF 153
Query: 122 DKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181
DK G YIE+V SPNNPDGTIRE V+ + + E K+IHD AYYWP YTPIT DHDIM
Sbjct: 154 DK-KGPYIELVTSPNNPDGTIRETVVNRPD-DDEAKVIHDFAYYWPHYTPITRRQDHDIM 211
Query: 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD--- 238
LFT S TGHAGSRIGWALVKD EVA+KM +I + SIGVSKESQ+R AKIL ++ +
Sbjct: 212 LFTFSXITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCK 271
Query: 239 ---DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLE 295
+ NFF+YGR +M RW LR+V+++S F LP+YP +CN+ GK S+P FAWL
Sbjct: 272 SESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLG 331
Query: 296 SKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQ 348
+KE+ D LR ++M+R G R G+D K+ RVSMLSRE++FN+FLERL+ ++
Sbjct: 332 TKEETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMK 384
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147862850|emb|CAN80923.1| hypothetical protein VITISV_013176 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/356 (58%), Positives = 263/356 (73%), Gaps = 15/356 (4%)
Query: 3 FEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHI 62
+E FW+++GD T+VISG MSY SD+ N+CWFL PE A+ I LH +V NAV+D +I
Sbjct: 95 YERFWQQMGDITTIVISGWQSMSYFSDVKNLCWFLEPEFAKQIIRLHKIVGNAVTDNYYI 154
Query: 63 VIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFD 122
V+GTGSTQL+QAALYALS P EP+SVVSAAP+YS YP+ TD+L+SGLYKW GDAN F+
Sbjct: 155 VVGTGSTQLFQAALYALSPPNASEPMSVVSAAPFYSSYPSVTDFLKSGLYKWAGDANNFN 214
Query: 123 KNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182
K +G YIE+V SPNNPDG+IR+ V VNRS E L+HD AYYWPQYTPI+ ADHD+ML
Sbjct: 215 K-DGPYIELVTSPNNPDGSIRQPV---VNRSGEN-LVHDFAYYWPQYTPISSPADHDLML 269
Query: 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY-- 240
FT+SK TGHAG R+GWALVKD EVA+KMT FIEL +IGVSK+SQ RAAKIL ++SD Y
Sbjct: 270 FTVSKATGHAGMRLGWALVKDEEVAKKMTSFIELNTIGVSKDSQQRAAKILQVISDSYEP 329
Query: 241 ---PN----FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAW 293
P FF + +M ERW LR ++QSG+F LPE+P +CNF G+ S P FAW
Sbjct: 330 VGNPKQSGPFFHFSHSMMEERWKALRSAVKQSGLFSLPEFPSSFCNFLGQAFGSQPAFAW 389
Query: 294 LESKED-EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQ 348
L+ + EDC L+ +I+ R G+ FGA +Y RVSML R+E FN+F +RLS++
Sbjct: 390 LKCEGGIEDCGNFLKXHKILTRNGKHFGASPEYVRVSMLDRDESFNLFTKRLSSLH 445
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | ||||||
| TAIR|locus:2026826 | 391 | TAA1 "tryptophan aminotransfer | 0.95 | 0.874 | 0.597 | 6.6e-113 | |
| TAIR|locus:2028010 | 388 | TAR1 "tryptophan aminotransfer | 0.952 | 0.884 | 0.561 | 1.8e-103 | |
| TAIR|locus:2121999 | 440 | TAR2 "tryptophan aminotransfer | 0.941 | 0.770 | 0.561 | 1.5e-99 | |
| TAIR|locus:2009056 | 457 | AT1G34040 [Arabidopsis thalian | 0.930 | 0.733 | 0.404 | 1.2e-65 | |
| TAIR|locus:2009031 | 463 | AT1G34060 [Arabidopsis thalian | 0.936 | 0.727 | 0.384 | 1.6e-63 | |
| TIGR_CMR|NSE_0758 | 397 | NSE_0758 "aspartate aminotrans | 0.525 | 0.476 | 0.272 | 4.3e-05 | |
| TIGR_CMR|DET_0843 | 358 | DET_0843 "histidinol-phosphate | 0.563 | 0.567 | 0.238 | 0.00021 |
| TAIR|locus:2026826 TAA1 "tryptophan aminotransferase of Arabidopsis 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
Identities = 209/350 (59%), Positives = 264/350 (75%)
Query: 2 AFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRH 61
A+E +WRK+GD+CT+ I G DLMSY SDM N+CWFL PEL +AI +LH VV NA ++ R+
Sbjct: 34 AYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRY 93
Query: 62 IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTF 121
IV+GTGSTQL QAA++ALSS +P+SVV+AAP+YS Y ET Y+RSG+YKW+GDA F
Sbjct: 94 IVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWGF 153
Query: 122 DKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181
DK G YIE+V SPNNPDGTIRE V+ + + E K+IHD AYYWP YTPIT DHDIM
Sbjct: 154 DKK-GPYIELVTSPNNPDGTIRETVVNRPDDD-EAKVIHDFAYYWPHYTPITRRQDHDIM 211
Query: 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD--- 238
LFT SK TGHAGSRIGWALVKD EVA+KM +I + SIGVSKESQ+R AKIL ++ +
Sbjct: 212 LFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCK 271
Query: 239 ---DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLE 295
+ NFF+YGR +M RW LR+V+++S F LP+YP +CN+ GK S+P FAWL
Sbjct: 272 SESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLG 331
Query: 296 SKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLS 345
+KE+ D LR ++M+R G R G+D K+ RVSMLSRE++FN+FLERL+
Sbjct: 332 TKEETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLA 381
|
|
| TAIR|locus:2028010 TAR1 "tryptophan aminotransferase related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
Identities = 197/351 (56%), Positives = 247/351 (70%)
Query: 2 AFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRH 61
AF+ +W K D+CT+VI DLMSY SD NVCWFL PEL +AI LH + NA ++ R+
Sbjct: 35 AFQEYWMKKKDRCTVVIPAWDLMSYFSDTKNVCWFLEPELEKAIKALHGAIGNAATEERY 94
Query: 62 IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTF 121
IV+GTGS+QL QAAL+ALSS +P+S+V+A PYYS Y E YL+S LYKW+GDA TF
Sbjct: 95 IVVGTGSSQLCQAALFALSSLSEVKPVSIVAAVPYYSTYVEEASYLQSTLYKWEGDARTF 154
Query: 122 DKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181
DK G YIE+V SPNNPDG +RE V VNR GK+IHDLAYYWP YTPIT DHD+M
Sbjct: 155 DKK-GPYIELVTSPNNPDGIMREPV---VNRREGGKVIHDLAYYWPHYTPITRRQDHDLM 210
Query: 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD--- 238
LFT SK TGHAGSRIGWALVKD EVA+KM ++ + SIGVSKESQ RA IL ++
Sbjct: 211 LFTFSKITGHAGSRIGWALVKDIEVAKKMVHYLTINSIGVSKESQTRATTILNELTKTCR 270
Query: 239 -DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297
+FFEYG M RW LR+V+ F LP YP ++CNF GK ++ P FAWL K
Sbjct: 271 TQSESFFEYGYEKMKSRWERLREVVESGDAFTLPNYPQDFCNFFGKTLSTSPAFAWLGYK 330
Query: 298 EDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQ 348
E+ D LL+ ++++ RGG R G + +Y RVSMLSR++ F++ L+RL+ I+
Sbjct: 331 EERDLGSLLKEKKVLTRGGDRCGCNKRYVRVSMLSRDDDFDVSLQRLATIK 381
|
|
| TAIR|locus:2121999 TAR2 "tryptophan aminotransferase related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
Identities = 197/351 (56%), Positives = 245/351 (69%)
Query: 3 FEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHI 62
+E +W++ G+ TMVI G +SY SD N+CWFL PELA+ I +H VV NAV+ R I
Sbjct: 89 YERYWQENGEVTTMVIPGWQSLSYFSDENNLCWFLEPELAKEIVRVHKVVGNAVTQDRFI 148
Query: 63 VIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFD 122
V+GTGSTQLYQAALYALS PI+VVSA PYYS YP TD L+SGLY+W GDA T+
Sbjct: 149 VVGTGSTQLYQAALYALSPHDDSGPINVVSATPYYSTYPLITDCLKSGLYRWGGDAKTY- 207
Query: 123 KNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182
K +G YIE+V SPNNPDG +RE+V VN S EG LIHDLAYYWPQYTPIT ADHD+ML
Sbjct: 208 KEDGPYIELVTSPNNPDGFLRESV---VN-STEGILIHDLAYYWPQYTPITSPADHDVML 263
Query: 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPN 242
FT SK TGHAG RIGWALVKD E ARKM +IEL +IGVSK+SQLR AK+L +VSD N
Sbjct: 264 FTASKSTGHAGIRIGWALVKDRETARKMIEYIELNTIGVSKDSQLRVAKVLKVVSDSCGN 323
Query: 243 -----FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297
FF++ M ERW +L+Q + + F +P++ + CNF G+ P FAW + +
Sbjct: 324 VTGKSFFDHSYDAMYERWKLLKQAAKDTKRFSVPDFVSQRCNFFGRVFEPQPAFAWFKCE 383
Query: 298 ED-EDCEKLLRAER-IMARGGRRFGADAKYARVSMLSREEIFNIFLERLSA 346
E DCEK LR E+ I+ + G+ FG + R+SML R+ FNIFL R+++
Sbjct: 384 EGIVDCEKFLREEKKILTKSGKYFGDELSNVRISMLDRDTNFNIFLHRITS 434
|
|
| TAIR|locus:2009056 AT1G34040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 141/349 (40%), Positives = 208/349 (59%)
Query: 4 EAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIV 63
E FW + ++ +V SG MSY + + F+ EL + I LH+VV NAV+D R I+
Sbjct: 101 EPFWIRKAEESAVVESGWHRMSYTFNGYGL--FMSAELEKIIRKLHNVVGNAVTDNRFII 158
Query: 64 IGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTF-- 121
G G+TQL A+++ALS P +V++ PYY+ Y + D+ S K++GDA+ +
Sbjct: 159 FGAGATQLLAASVHALSQTNSLSPSRLVTSVPYYNLYKQQADFFNSTNLKFEGDASAWKR 218
Query: 122 -DKNNGA--YIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADH 178
++N+ IE+V SPNNPDG ++ AVL N K IHD AYYWP ++PIT AD
Sbjct: 219 SERNDDIKQVIEIVTSPNNPDGKLKRAVLDGPNV----KYIHDYAYYWPYFSPITRQADE 274
Query: 179 DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD 238
D+ LF+LSK TGHAGSR GWALVK+ V KM +I L S+GVS+++QLRA ++L +V
Sbjct: 275 DLSLFSLSKTTGHAGSRFGWALVKEKTVYEKMKIYISLSSMGVSRDTQLRALQLLKVVIG 334
Query: 239 DYPN-FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWL--E 295
D N F +G + +RW +L ++ S F L EYCN+ K P +AW+ E
Sbjct: 335 DGGNEIFRFGYGTLKKRWEILNKIFSMSTRFSLETIKPEYCNYFKKVREFTPSYAWVKCE 394
Query: 296 SKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERL 344
ED DC ++ +A +I R G FG+D ++ R+S++ ++ F+ + L
Sbjct: 395 RPEDTDCYEIFKAAKITGRNGEMFGSDERFVRLSLIRSQDDFDQLIAML 443
|
|
| TAIR|locus:2009031 AT1G34060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 136/354 (38%), Positives = 205/354 (57%)
Query: 4 EAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIV 63
E FW + ++ +++SG MSY+ + G ++ EL + I LH VV NAV+D R ++
Sbjct: 102 EPFWMRQAERSAILVSGWHRMSYIYEDGT---YVSRELEKVIRKLHSVVGNAVTDNRFVI 158
Query: 64 IGTGSTQLYQAALYALSSPGGP--EPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTF 121
G+G+TQL AA++ALS P ++++ PYY+ Y + ++ S K++G+A+ +
Sbjct: 159 FGSGTTQLLAAAVHALSLTNSSVSSPARLLTSIPYYAMYKDQAEFFDSAHLKFEGNASAW 218
Query: 122 DK-----NNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAA 176
+ N IEVV SPNNPDG ++ AVL N K +HD AYYWP ++PIT
Sbjct: 219 KQSGRNDNITQVIEVVTSPNNPDGKLKRAVLDGPNV----KTLHDYAYYWPHFSPITHPV 274
Query: 177 DHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIV 236
D D+ LF+LSK TGHAGSR GW LVKD + KM RFI L S+GVSKE+QL ++L +V
Sbjct: 275 DEDLSLFSLSKTTGHAGSRFGWGLVKDKAIYEKMDRFIRLTSMGVSKETQLHVLQLLKVV 334
Query: 237 SDDYPN-FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWL- 294
D N F +G + +RW L ++ S F L EYCN+ K P +AW+
Sbjct: 335 VGDGGNEIFSFGYGTVKKRWETLNKIFSMSTRFSLQTIKPEYCNYFKKVREFTPSYAWVK 394
Query: 295 -ESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAI 347
E ED +C ++ RA +I R G FG++ ++ R+S++ ++ F+ + L +
Sbjct: 395 CERPEDTNCYEIFRAAKITGRNGNVFGSEERFVRLSLIRSQDDFDQLIAMLKKL 448
|
|
| TIGR_CMR|NSE_0758 NSE_0758 "aspartate aminotransferase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 94 (38.1 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 60/220 (27%), Positives = 87/220 (39%)
Query: 131 VVNSPNNPDGTIREAV----LAKVNRS-AEGKLIHD-----LAYYWPQYTPITGAA---- 176
++NSPNNP G E LA R+ + +I D + Y + I A
Sbjct: 165 LINSPNNPSGVCYEESELRDLASALRAHPQVHIISDDIYEHITYAESSFLNIANVAPELG 224
Query: 177 DHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIV 236
+ I++ +SKC G R+G+A + + V + R E + GV +Q A L
Sbjct: 225 ERIILVNGVSKCYAMTGWRVGYAAIPNKAVISLVCRLQEHSTFGVCTIAQAAALGALRSG 284
Query: 237 SDDYPN---FFEYGRRLMSERWNMLRQVI--RQSGVFGLPEYPLEYCN-FTGKFTNSHPG 290
+D F R E +ML ++ + G F Y C+ F GK S G
Sbjct: 285 ADVLSERLAVFARKRNKAVEVLSMLPELCCYKPDGGF----YLFLSCSAFFGK--KSPSG 338
Query: 291 FAWLESKEDED-CEKLLRAERIMARGGRRFGADAKYARVS 329
F E K D D + LL + G FG Y R+S
Sbjct: 339 F---EVKTDSDVADYLLEEHAVAVVPGEEFGVPG-YFRIS 374
|
|
| TIGR_CMR|DET_0843 DET_0843 "histidinol-phosphate aminotransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 119 (46.9 bits), Expect = 0.00021, P = 0.00021
Identities = 55/231 (23%), Positives = 101/231 (43%)
Query: 62 IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTF 121
I+ G GS QL L +PG V++ P ++ Y TD R + DA +
Sbjct: 86 IICGAGSDQLIDLLLRLFINPGD----EVINCPPTFAMYKFYTDLNRGTVVNVPRDAG-Y 140
Query: 122 DKNNGAY---------IEVVNSPNNPDGT-IREAVLAKVNRSAEGKLIHDLAYYWPQYTP 171
D N G + + +PNNP GT I + + ++ +I + Y + T
Sbjct: 141 DVNIGGIKNALTPKTKLIFIAAPNNPTGTAISKEDIRQILDLGVPTVIDEAYYEFTGQTM 200
Query: 172 ITGAADH-DIMLF-TLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRA 229
+T + ++M+ T SK G AG R+G+ L +A ++R + S+ ++ ++ +R
Sbjct: 201 VTDMPSYPNLMILRTFSKWAGLAGLRVGYGLFPPV-IADYLSRIKDPYSVNIAADAAVRQ 259
Query: 230 AKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNF 280
++ +Y E ++++ ER + ++ + S L YP NF
Sbjct: 260 T----MLQREY--MLETVKKIVDERKRLYTELSKFSW---LKPYP-SAANF 300
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 360 360 0.00082 117 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 619 (66 KB)
Total size of DFA: 255 KB (2136 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.90u 0.20s 29.10t Elapsed: 00:00:02
Total cpu time: 28.90u 0.20s 29.10t Elapsed: 00:00:02
Start: Tue May 21 06:30:12 2013 End: Tue May 21 06:30:14 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9S7N2 | TAA1_ARATH | 2, ., 6, ., 1, ., 2, 7 | 0.5920 | 0.9583 | 0.8823 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | gw1.VIII.421.1 | hypothetical protein (351 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 360 | |||
| pfam04864 | 362 | pfam04864, Alliinase_C, Allinase | 1e-175 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 5e-34 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 6e-21 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 6e-10 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 1e-09 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 2e-08 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 3e-08 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 3e-07 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 4e-07 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 4e-05 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 5e-05 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 8e-05 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 2e-04 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 8e-04 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 0.001 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 0.003 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 0.003 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 0.004 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 0.004 |
| >gnl|CDD|218297 pfam04864, Alliinase_C, Allinase | Back alignment and domain information |
|---|
Score = 490 bits (1264), Expect = e-175
Identities = 184/360 (51%), Positives = 235/360 (65%), Gaps = 20/360 (5%)
Query: 1 MAFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGR 60
+ E +W + ++ ++ISG MSY SD N+ WFL PEL AI LH VV NA +D R
Sbjct: 9 LFLEEYWMRHKERTAVLISGWHRMSYFSDEDNL-WFLSPELERAIKRLHGVVGNAATDDR 67
Query: 61 HIVIGTGSTQLYQAALYALSSPGGPE--PISVVSAAPYYSQYPAETDYLRSGLYKWDGDA 118
+IV GTGSTQL QAA+YALS P P+ VV+AAPYYS Y +T Y S YKW+G+A
Sbjct: 68 YIVFGTGSTQLLQAAVYALSPNATPTSPPVKVVAAAPYYSVYKEQTSYFDSKGYKWEGNA 127
Query: 119 NTF--DKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAA 176
+ N G +IE+V SPNNPDGT+REAV+ K IHDLAYYWP YTPIT A
Sbjct: 128 AAYVNTDNPGPFIELVTSPNNPDGTLREAVID------GSKAIHDLAYYWPHYTPITYPA 181
Query: 177 DHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIV 236
D DIMLFT+SK TGHAGSR GWALVKD EVA+KM +I +IGVSKESQLR KIL +V
Sbjct: 182 DEDIMLFTMSKYTGHAGSRFGWALVKDEEVAKKMVEYITKNTIGVSKESQLRTLKILKVV 241
Query: 237 SDDY-------PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHP 289
+FF++G M ERW LR+++ QS F L + P EYCN+ G+ P
Sbjct: 242 LATCKTESGTMGDFFDFGYEKMRERWEKLRELVSQSDRFSLQKLPSEYCNYFGRIREPSP 301
Query: 290 GFAWL--ESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAI 347
+AWL E +ED DC ++LR +I+ R G RFGAD++Y R+S++ ++ F+ LERL ++
Sbjct: 302 AYAWLKCEWEEDTDCYEVLRNGKILTRSGERFGADSRYVRLSLIKTQDDFDQLLERLKSM 361
|
Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulfoxide cysteine derivatives by alliinase (EC:4.4.1.4), whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system. Length = 362 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 5e-34
Identities = 86/369 (23%), Positives = 128/369 (34%), Gaps = 53/369 (14%)
Query: 1 MAFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGR 60
F L + + L+ Y D G PEL EAI
Sbjct: 8 PDFPPPPEVL-EALAAAALRAGLLGYYPDPGL------PELREAIAEWLGRRGGVDVPPE 60
Query: 61 HIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA----------ETDYLRSG 110
IV+ G+ + L AL +PG V+ P Y Y A G
Sbjct: 61 EIVVTNGAQEALSLLLRALLNPGD----EVLVPDPTYPGYEAAARLAGAEVVPVPLDEEG 116
Query: 111 LYKWDGDANTFDKNNGAYIEVVNSPNNPDGTI-REAVLAKVNRSAEGK---LIHDLAYYW 166
+ D + K + +N+PNNP G + E L ++ A+ +I D AY
Sbjct: 117 GFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAE 176
Query: 167 PQYTPIT-------GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI 219
Y A + I+L + SK G G RIG+ + E+ ++ + + +
Sbjct: 177 LVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTS 236
Query: 220 GVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCN 279
G S SQ AA L DD E R R + L + +++ G L
Sbjct: 237 GPSTLSQAAAAAAL----DDGEEHLEELRERYRRRRDALLEALKELG--PLVVVKPSGGF 290
Query: 280 FTGKFTNSHPGFAWLESKEDED---CEKLLRAERIMAR-GGRRFGADAKYARVSMLSREE 335
F WL+ E +D E+LL ++ R G + R+S + EE
Sbjct: 291 -----------FLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEE 339
Query: 336 IFNIFLERL 344
LERL
Sbjct: 340 ELEEALERL 348
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 6e-21
Identities = 73/342 (21%), Positives = 113/342 (33%), Gaps = 56/342 (16%)
Query: 39 PELAEAI-NNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYY 97
PEL EAI V I++ G+ + A AL +PG V+ P Y
Sbjct: 68 PELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDE----VLIPDPGY 123
Query: 98 SQYPA---------ETDYLRSGLYKWDGDANTFDKNNGAYIE------VVNSPNNPDGTI 142
Y A L + D + A I ++NSPNNP G +
Sbjct: 124 PSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLE----AAITPKTKAIILNSPNNPTGAV 179
Query: 143 -REAVLAKVNRSAEGK---LIHDLAY---YWPQYTPITGAADHD-----IMLFTLSKCTG 190
+ L + A +I D Y + + I + + SK G
Sbjct: 180 YSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYG 239
Query: 191 HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRL 250
G RIGW + E+ + + + +Q A L E R
Sbjct: 240 MTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALN--GPQSDEVVEEMREE 297
Query: 251 MSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDED----CEKLL 306
ER ++L + + + G + + P G F + + + E D +KLL
Sbjct: 298 YRERRDLLVEALNEIGGLSVVKPPE------GAF------YLFPKIPELLDSEEFAKKLL 345
Query: 307 RAERIMARGGRRFGAD--AKYARVSMLSREEIFNIFLERLSA 346
+ G FG Y R+S+ + EE L RL+
Sbjct: 346 EEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLAR 387
|
Length = 393 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 6e-10
Identities = 47/194 (24%), Positives = 80/194 (41%), Gaps = 31/194 (15%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
EL A+ + VVD ++++G GS +L + + A PG V+ P +S
Sbjct: 60 RELRAALAEYYGVVDPE-----NVLVGNGSDELIELLVRAFVEPGDT----VLIPEPTFS 110
Query: 99 QYPAETDYLRSGLYKWDGDANTFDKNNGAYIE---------VVNSPNNPDGTI--REAVL 147
Y + + K F + A + + +PNNP GT+ RE +
Sbjct: 111 MYEIAAQLAGAEVVKVP--LKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELR 168
Query: 148 AKVNRSAEGK-LIHDLAYYWPQYTP---ITGAADHD--IMLFTLSKCTGHAGSRIGWALV 201
A + EG ++ D AY +++P + I+L T SK G AG R+G+A+
Sbjct: 169 ALLEALPEGGLVVIDEAYI--EFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIA 226
Query: 202 KDTEVARKMTRFIE 215
E+ + +
Sbjct: 227 NP-ELIAALNKVRP 239
|
Length = 356 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 30/171 (17%)
Query: 62 IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYK---WDGDA 118
I++G GS ++ + + A PG +V+ P YS Y + D D
Sbjct: 74 ILLGNGSDEIIELLIRAFLEPG----DAVLVPPPTYSMYEISAK-IHGAEVVKVPLDED- 127
Query: 119 NTFDKNNGAYIEVVN----------SPNNPDGTI--REAVLAKVNRSAEGKL-IHDLAY- 164
+ + I V SPNNP G + R + A + R+ E L + D AY
Sbjct: 128 ---GQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYG 184
Query: 165 -YWPQYTPITGAADHD--IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTR 212
+ + + + A++ I+L TLSK G AG RIG+A+ E+ + +
Sbjct: 185 EFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANA-EIIDALNK 234
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 68/340 (20%), Positives = 109/340 (32%), Gaps = 60/340 (17%)
Query: 39 PELAEAINNLHHVVDNAVSD-GRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYY 97
PEL EA+ D +V G+G+ +A ++ L G ++ AP Y
Sbjct: 44 PELREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDA---ILVPAPTY 100
Query: 98 SQYP-------AETDYLRSGLYKWDGDANTFDKNNGAYIE--------VVNSPNNPDGTI 142
Y E LY + FD A E + SP+NP GT+
Sbjct: 101 PSYIRIFRLAGGEVVRYP--LYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTV 158
Query: 143 --REAV--LAKVNRSAEGKLIHDLAY---------YWPQYTPITGAADHDIMLFTLSKCT 189
E + L + + L+ D AY + + +++ + SK
Sbjct: 159 ATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSLDAVATR-ALLAEGPNLLVVGSFSKAF 217
Query: 190 GHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRR 249
G AG R+G+ L + V ++ + S Q AA L D
Sbjct: 218 GLAGWRVGYILG-NAAVISQLRKLARPFY--SSTHLQAAAAAAL----SDPLLVASELEE 270
Query: 250 LMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWL---ESKEDEDCEKLL 306
M +R R +R GL L + F + LL
Sbjct: 271 -MRQRIKERRDYLRD----GLEAAGLSV------LPSQAGFFLLTGLDPEAALALAQVLL 319
Query: 307 RAERIMARGGRRFGADAKYARVSM--LSREEIFNIFLERL 344
+ G FG + R+++ + EE+ LE +
Sbjct: 320 EEVGVYVTPGSSFGGPG-WLRITVAGGTEEEL-EELLEAI 357
|
Length = 357 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 12/83 (14%)
Query: 131 VVNSPNNPDGTI-REAVLAKVNR-SAEGKL--IHDLAYYW------PQYTP--ITGAADH 178
V SPNNP G + EA+L VN+ AE + I D AY + ++P I G+ +H
Sbjct: 165 VTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNH 224
Query: 179 DIMLFTLSKCTGHAGSRIGWALV 201
I L++LSK G A RIG+ ++
Sbjct: 225 TISLYSLSKAYGFASWRIGYMVI 247
|
Length = 389 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 72/273 (26%), Positives = 117/273 (42%), Gaps = 52/273 (19%)
Query: 91 VSAAPYYSQYPAETDY-LRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGT------IR 143
V P YS+ E +Y L L K + D NT I +++ P NP G+ I+
Sbjct: 131 VIEVPIYSE---ECNYKLTPELVKENMDENT------RLIYLID-PLNPLGSSYTEEEIK 180
Query: 144 EAVLAKVNRSAEGKLIHDLAY--YWPQYTPITGAA-DHDIMLFTLSKCTGHAGSRIGWAL 200
E A++ R + L+HD Y + ++T A +H + ++ SK G AG RIG A+
Sbjct: 181 E--FAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIG-AV 237
Query: 201 VKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQ 260
V ++ + + I + +G + +Q A I G+ + + RR + ++++
Sbjct: 238 VATPDLIEVV-KSIVINDLGTNVIAQ--EAAIAGLKVK--DEWIDRIRRTTFKNQKLIKE 292
Query: 261 VIRQ-SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMARG 315
+ + GVF LP YP SH ++ E ED + L +I R
Sbjct: 293 AVDEIEGVF-LPVYP------------SHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQ 339
Query: 316 G----RRFGADAKYARVSMLSREEIFNIFLERL 344
G +RFG +Y RVS E +F E
Sbjct: 340 GTYTSKRFG--DRYIRVSFSIPREQVEVFCEEF 370
|
Length = 380 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 82/324 (25%), Positives = 121/324 (37%), Gaps = 49/324 (15%)
Query: 38 VPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY 96
PEL EA++ V V+N IV G G ++ + PG V+ P
Sbjct: 71 APELREALSKYTGVPVENI------IVGGDGMDEVIDTLMRTFIDPGDE----VIIPTPT 120
Query: 97 YSQYP-------AETDYL-RSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGT-IREAVL 147
+S Y A+ Y R + D D+ + + +PNNP G I E +
Sbjct: 121 FSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDI 180
Query: 148 AKVNRSAEGKLIHDLAY--YWP-QYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDT 204
K+ S + + D AY + YTP+ D+ I+ T SK G AG RIG+ V +
Sbjct: 181 RKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPE- 239
Query: 205 EVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQ 264
+ R S+ ++L A + +SD + E + L +
Sbjct: 240 WLIDYYMRAKTPFSL-----TRLSQAAAIAALSDK--EYIEKSIEHGIKSREYLYNELP- 291
Query: 265 SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRF-GADA 323
YP E NF E CE+LL+ ++ R F G
Sbjct: 292 -----FKVYPSE-ANFVLVDVTPM--------TAKEFCEELLK-RGVIVRDCTSFRGLGD 336
Query: 324 KYARVSMLSREEIFNIFLERLSAI 347
Y RVS+ + EE FLE L I
Sbjct: 337 YYIRVSIGTFEEN-ERFLEILKEI 359
|
Length = 361 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 50/232 (21%), Positives = 85/232 (36%), Gaps = 37/232 (15%)
Query: 131 VVNSPNNPDG-TIREAVLAK-VNRSAEGKLI-------HDLAYYWPQYTPITGAADHDIM 181
VVN P+NP G ++ L + + R+A + DL + P + D I
Sbjct: 147 VVNFPHNPTGASVTPRELDELLERAARSGAVLLWDNAFADLVHDAPPLPDPSALYDRVIS 206
Query: 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAA-------KILG 234
TLSK G G R+GW + ++ ++ R + ++ +S +L A ++G
Sbjct: 207 FGTLSKAFGLPGLRVGWCVGPA-DLLAELVRLRDYTTLSLSPLVELLAEVAVEHADALIG 265
Query: 235 IVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWL 294
+ + +++R + GV P + PG A +
Sbjct: 266 PRLAEARANRRRLLDWAAAHPDVVRCTPPEGGVAAFPRF---------------PGHADV 310
Query: 295 ESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSA 346
+ C +LL ++ G FGA A R+ L RLSA
Sbjct: 311 T----DLCRRLLARHGVLLVPGSCFGA-ADRMRLGFGGSSAELRAGLARLSA 357
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 23/191 (12%)
Query: 88 ISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNP-DGTIREAV 146
I + A YY E D+L D + + + A + ++N P NP E
Sbjct: 134 IQMAGATSYYMPLKKENDFL------PDLELIPEEIADKAKMMILNFPGNPVPAMAHEDF 187
Query: 147 LAKVNRSAEGK---LIHDLAY---YWPQYTPIT-----GAADHDIMLFTLSKCTGHAGSR 195
+V A+ ++HD AY Y+ PI+ GA + + + +LSK AGSR
Sbjct: 188 FKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSR 247
Query: 196 IGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERW 255
IG+ + + E+ R +T+F GV Q A L + F E R + ER
Sbjct: 248 IGYMI-GNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAA----FCEKNRGIYQERR 302
Query: 256 NMLRQVIRQSG 266
+ L R G
Sbjct: 303 DTLVDGFRTFG 313
|
Length = 399 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 36/194 (18%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
PEL + V D ++ G G ++ Q AL +PG + V A P +S
Sbjct: 67 PELRTKVAKHLGV------DEEQLLFGAGLDEVIQMISRALLNPGT----NTVMAEPTFS 116
Query: 99 QY-------PAETDY--LRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTI--REAVL 147
QY AE L+ G + + D + + N PNNP GT E +L
Sbjct: 117 QYRHNAIIEGAEVREVPLKDGGHDLEAMLKAID-EQTKIVWICN-PNNPTGTYVNHEELL 174
Query: 148 AKVNRSAEGKL-IHDLAYY-------WPQYTPITGAADHDIMLFTLSKCTGHAGSRIGWA 199
+ + L + D AYY +P P+ ++ I+L T SK G A R+G+
Sbjct: 175 SFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYG 234
Query: 200 -----LVKDTEVAR 208
L++ +AR
Sbjct: 235 IASEELIEKLNIAR 248
|
Length = 359 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 21/155 (13%)
Query: 61 HIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANT 120
+I +G GS ++ + A + G V+ P ++ Y + +G +
Sbjct: 78 NIFVGNGSDEIIHLIMLAFINKGD----VVIYPHPSFAMYSVYSKI--AGAVEIPVKLKE 131
Query: 121 -FDKNNGAYIEVVN----------SPNNPDGT-IREAVLAKVNRSAEGKLIHDLAY---Y 165
+ + G++I+V+ +PNNP G+ I + K+ + G ++ D AY Y
Sbjct: 132 DYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFY 191
Query: 166 WPQYTPITGAADHDIMLFTLSKCTGHAGSRIGWAL 200
+ ++ I+L TLSK G AG R+G+A+
Sbjct: 192 GNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAV 226
|
Length = 351 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 30/175 (17%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
EL A + + ++ G+ Q A+Y L P P V+ AP YS
Sbjct: 50 DELRAAAAAYYGL------PAASVLPVNGA----QEAIYLL--PRLLAPGRVLVLAPTYS 97
Query: 99 QYPAETDYLRSG-----LYKWDGDANTFDKNNGAYIEVVNSPNNPDGTI--REAVLAKVN 151
+Y + +G L D + A + VV +PNNP G + E +LA
Sbjct: 98 EYARA--WRAAGHEVVELPDLDRLPAALE---EADLLVVCNPNNPTGRLIPPETLLALAA 152
Query: 152 RSAE--GKLIHDLAYY--WPQ--YTPITGAADHDIMLFTLSKCTGHAGSRIGWAL 200
R G L+ D A+ P P ++L +L+K G AG R+G+ +
Sbjct: 153 RLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVV 207
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 52/196 (26%), Positives = 74/196 (37%), Gaps = 44/196 (22%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
PE EA+ +L+ V +I+ G+T LYAL PG V+S P Y
Sbjct: 65 PEFKEAVASLYQNVKPE-----NILQTNGATGANFLVLYALVEPGD----HVISVYPTYQ 115
Query: 99 Q-------YPAETDYLR----SGLYKWDGDANTFDK---NNGAYIEVVNSPNNPDGTI-R 143
Q AE DY + +G W D + + N I +N+ NNP G +
Sbjct: 116 QLYDIPESLGAEVDYWQLKEENG---WLPDLDELRRLVRPNTKLI-CINNANNPTGALMD 171
Query: 144 EAVLAKVNRSAEGKLIHDLAY------YWP-----QYTPITGAADHDIMLFTLSKCTGHA 192
A L ++ A D AY Y P I + I ++SK
Sbjct: 172 RAYLEEIVEIARS---VD-AYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLP 227
Query: 193 GSRIGWALVKDTEVAR 208
G R+GW + + EV
Sbjct: 228 GIRVGW-IAANEEVID 242
|
Length = 373 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 49/195 (25%), Positives = 72/195 (36%), Gaps = 37/195 (18%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGG----PEP------- 87
P L EAI + D I++ G + A L PG +P
Sbjct: 72 PALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRH 131
Query: 88 -ISVVSAAPYYSQYPAETDY-LRSGLYK--WDGDANTFDKNNGAYIEVVNSPNNPDGTIR 143
+ +V A ++ Y L L + W+ D GA +V SP NP GT+
Sbjct: 132 FLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTV------GA---LVASPANPTGTLL 182
Query: 144 E----AVLAKVNRSAEGKLIHDLAYYWPQY----TPITGAADHDIMLFTLSKCTGHAGSR 195
A L++ R+ G L+ D Y+ Y + D +L + SK G G R
Sbjct: 183 SRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWR 242
Query: 196 IGW-----ALVKDTE 205
+GW A V + E
Sbjct: 243 LGWLVAPPAAVPELE 257
|
Length = 387 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 37/120 (30%), Positives = 47/120 (39%), Gaps = 24/120 (20%)
Query: 95 PYYSQYPAETDYLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTI------REAV-L 147
PY+ E +L D DA D A + +N PNNP G + E V
Sbjct: 141 PYFMPLKEENGFLP------DLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDF 194
Query: 148 AKVNRSAEGKLIHDLAY---YWPQYTP-----ITGAADHDIMLFTLSKCTGHAGSRIGWA 199
AK + HD AY + Y P + GA D I +LSK G RIG+A
Sbjct: 195 AKKYDII---VCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFA 251
|
Length = 385 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.004
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 131 VVNSPNNPDGTI-REAVLAKVNRSAEGK---------LIHD-----LAYYWPQYTPITGA 175
++NSPNNP G + E L + E K LI D + Y + I
Sbjct: 173 IINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKY 232
Query: 176 ADHDIMLFTLSKCTGHAGSRIGWALV 201
D+ I++++ SK G RIG+ V
Sbjct: 233 YDNSIVVYSFSKSLSLPGERIGYIAV 258
|
Length = 394 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 132 VNSPNNPDGTI------REAV-LAKVNRSAEGKLIHDLAY---YWPQYTPIT-----GAA 176
+N PNNP G + E V AK + ++HD AY + P++ GA
Sbjct: 173 LNYPNNPTGAVATKAFFEETVAFAKKHNIG---VVHDFAYGAIGFDGQKPVSFLQTPGAK 229
Query: 177 DHDIMLFTLSKCTGHAGSRIGWAL 200
D I L+TLSK AG R+ +A+
Sbjct: 230 DVGIELYTLSKTFNMAGWRVAFAV 253
|
Length = 389 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.97 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.97 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.96 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.96 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.96 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.96 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.96 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.96 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.96 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.96 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.96 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.96 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.95 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.95 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.95 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.95 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.95 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.95 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.95 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.95 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.95 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.95 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.95 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.94 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.94 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.94 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.94 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.94 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.94 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.94 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.94 | |
| PLN02721 | 353 | threonine aldolase | 99.94 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.94 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.94 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.94 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.94 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.93 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.93 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.93 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.93 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.93 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.93 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.93 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.93 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.93 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.93 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.93 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.93 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.93 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.92 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.92 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.92 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.92 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.92 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.92 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.92 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.92 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.92 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.92 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.92 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.92 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.92 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.92 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.92 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.92 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.92 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.92 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.91 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.91 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.91 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.91 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.91 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.91 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.91 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.91 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.9 | |
| PLN02651 | 364 | cysteine desulfurase | 99.9 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.9 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.9 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.9 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.9 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.89 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.89 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.89 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.89 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.89 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.89 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.89 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.88 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.88 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.88 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.88 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.88 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.87 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.87 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.87 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.87 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.87 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.86 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.86 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.86 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.86 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.85 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.85 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.85 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.85 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.85 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.85 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.85 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.85 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.85 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.84 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.84 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.84 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.84 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.84 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.83 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.83 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.83 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.82 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.82 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.82 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.81 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.81 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.81 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.81 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.81 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.8 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.8 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.8 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.8 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.79 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.79 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.78 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.77 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.77 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.77 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.76 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.76 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.76 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.75 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.75 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.75 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.75 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.74 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.74 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.74 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.73 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.73 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.73 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.73 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.72 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.71 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.71 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.71 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.7 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.7 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.7 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.69 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.69 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.69 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.69 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.68 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.64 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.64 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.63 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.62 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.62 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.62 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.61 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.61 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.59 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.58 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.58 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.58 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.57 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.57 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.57 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.56 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.55 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.55 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.54 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.54 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.53 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.53 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.52 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.51 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.5 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.5 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.49 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.49 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.48 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.48 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.48 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.48 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.47 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.46 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.46 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.45 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.44 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.44 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.44 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.43 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.43 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.43 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.43 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.42 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.42 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.42 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.42 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.41 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.41 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.41 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.41 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.41 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.4 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.4 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.4 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.4 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.39 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.39 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.39 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.39 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.38 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.38 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.38 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.38 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.37 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.37 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.36 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.36 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.35 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.35 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.35 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.34 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.34 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.33 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.33 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.32 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.32 | |
| PLN02263 | 470 | serine decarboxylase | 99.31 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.29 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.28 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.28 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.26 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.25 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.19 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.14 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.13 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.08 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.06 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.06 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.06 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.05 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 98.95 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.85 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 98.8 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.78 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.77 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.73 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.73 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.69 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 98.63 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.6 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.47 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.29 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.22 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.22 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.22 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.12 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.08 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 98.05 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 97.99 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 97.97 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.93 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 97.91 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 97.65 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 97.44 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 97.17 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 96.51 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 95.46 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 94.41 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 92.77 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 86.71 |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-50 Score=373.75 Aligned_cols=302 Identities=24% Similarity=0.317 Sum_probs=262.1
Q ss_pred cccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
+|++..|+ ++||+++++++.++ |..++++++|++|+|+++++..++.+++++||+ |++++|.|+.|..++
T Consensus 60 ~Y~~~~G~-----~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDe----Vlip~P~Y~~y~~~~ 130 (393)
T COG0436 60 HYTPSAGI-----PELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDE----VLIPDPGYPSYEAAV 130 (393)
T ss_pred CCCCCCCC-----HHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCE----EEEeCCCCcCHHHHH
Confidence 68899998 99999999987654 668888777999999999999999999999999 999999999999999
Q ss_pred HHhCCeeeeecCCc--ccccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC-
Q 018172 105 DYLRSGLYKWDGDA--NTFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ- 168 (360)
Q Consensus 105 ~~~g~~~~~~~~~~--~~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~- 168 (360)
...|++++.++++. +++.. +++||+|++++||||||.++++ .+.++|++|++++|+||+|....
T Consensus 131 ~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~y 210 (393)
T COG0436 131 KLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVY 210 (393)
T ss_pred HhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhccc
Confidence 99999999998754 35544 3589999999999999999993 45678888999999999998421
Q ss_pred ----CCcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCch
Q 018172 169 ----YTPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 169 ----~~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
..+.. ...++++.+.||||.|+++|||+||++++++++++.+.+.+.....+++.+.|.++.++|+.... .
T Consensus 211 d~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~--~ 288 (393)
T COG0436 211 DGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS--D 288 (393)
T ss_pred CCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc--h
Confidence 23222 23578999999999999999999999994489999999999989999999999999999995422 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCC-CCCcccccccccCCCCCCcccccCCc---h-HHHHHHHHhhCeeeeCC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPE-YPLEYCNFTGKFTNSHPGFAWLESKE---D-EDCEKLLRAERIMARGG 316 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~gI~~~pg 316 (360)
..++.+++.+++||+.+.+.|.+.+++.+.. |.|++ |+|++++. . +++.++|.++||.+.||
T Consensus 289 ~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~-------------Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG 355 (393)
T COG0436 289 EVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAF-------------YLFPKIPELLDSEEFAKKLLEEAGVAVVPG 355 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeE-------------EEEeecCCCCCHHHHHHHHHHhCCEEEecc
Confidence 6899999999999999999999998888877 77887 66777653 3 88999999999999999
Q ss_pred CCCCC--CCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 317 RRFGA--DAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 317 ~~f~~--~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
+.||. +.+++|+|++.+++.++++++++.+++.+.
T Consensus 356 ~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl~~~~~~~ 392 (393)
T COG0436 356 SGFGEPPGEGYVRLSLATSEETLEEALRRLARFLAEY 392 (393)
T ss_pred cccCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHhc
Confidence 99996 468999999888899999999999998754
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=338.16 Aligned_cols=298 Identities=19% Similarity=0.290 Sum_probs=250.2
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|+++.|. ++||++++++++. .|..++++++|++|+|+++++..++..++++||+ |++++|+|..+...
T Consensus 85 ~~Y~~~~G~-----~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~----Vlv~~P~y~~~~~~ 155 (413)
T PLN00175 85 NQYARGFGV-----PELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDE----VILFAPFYDSYEAT 155 (413)
T ss_pred CCcCCCCCC-----HHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCE----EEEeCCCchhHHHH
Confidence 579999998 9999999998764 4777777657999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcccccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCC-
Q 018172 104 TDYLRSGLYKWDGDANTFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQY- 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~- 169 (360)
++..|++++.++++.+++.. .+++|+|++++||||||.++++ .+.++|+++++++|+||+|.+..+
T Consensus 156 ~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~ 235 (413)
T PLN00175 156 LSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFE 235 (413)
T ss_pred HHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccC
Confidence 99999999999876433221 3578999999999999999983 456778889999999999985321
Q ss_pred ---Cc---CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 170 ---TP---ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 170 ---~~---~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
.+ +.+..+++++++||||.|+++|+|+||+++ ++++++.+........++.+.+.|.++.++|+. . +.+
T Consensus 236 ~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~-~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~--~--~~~ 310 (413)
T PLN00175 236 GDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA-PPHLTWGVRQAHSFLTFATATPMQWAAVAALRA--P--ESY 310 (413)
T ss_pred CcccChhhCCCCcCcEEEEecchhhccCcchheeeeEe-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC--C--HHH
Confidence 12 223357899999999999999999999999 899999999888777889999999999998873 2 378
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-----ch-HHHHHHHHhhCeeeeCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-----ED-EDCEKLLRAERIMARGGR 317 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~~gI~~~pg~ 317 (360)
+++.++.++++++.+.+.|+++ ++.+..|.|++ |+|++++ +. +.+..+++++||.+.||.
T Consensus 311 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~~-------------f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~ 376 (413)
T PLN00175 311 YEELKRDYSAKKDILVEGLKEV-GFKVYPSSGTY-------------FVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPS 376 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeE-------------EEEEeccccCCCCHHHHHHHHHHhCCEEEeCch
Confidence 9999999999999999999998 46666676665 6777762 23 455666678899999999
Q ss_pred CCCC----CCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 318 RFGA----DAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 318 ~f~~----~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
.|+. ..+++||+++.++|++++++++|.+++++
T Consensus 377 ~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~~~~~ 413 (413)
T PLN00175 377 VFYLNPEDGKNLVRFAFCKDEETLRAAVERMKTKLKR 413 (413)
T ss_pred HhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHhC
Confidence 8853 35799999988999999999999998864
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=334.76 Aligned_cols=296 Identities=19% Similarity=0.236 Sum_probs=239.4
Q ss_pred ccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. ++||++++++++ .+|..++++++|++|+|+++++.+++..++++||+ |++++|+|+.+...
T Consensus 62 ~~Y~~~~G~-----~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~----Vlv~~P~y~~~~~~ 132 (388)
T PRK07366 62 HGYLLFHGT-----LDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDF----ALLLDPGYPSHAGG 132 (388)
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCE----EEEcCCCCcchHHH
Confidence 458888887 999999999975 44777777547999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC-
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ- 168 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~- 168 (360)
++..|++++.++++.+ ++.. .++++++++++||||||.++++ .+.++|++++++||+||+|.+..
T Consensus 133 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 212 (388)
T PRK07366 133 VYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVF 212 (388)
T ss_pred HHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhccc
Confidence 9999999999998743 3322 2478999999999999999993 45567888999999999998532
Q ss_pred -----CCcCCC---CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCc
Q 018172 169 -----YTPITG---AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 169 -----~~~~~~---~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
.+++.. ..+++++++||||+||+||+|+||+++ ++++++.+.+.+.....+.+...|.++.+.+.. .
T Consensus 213 ~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~-~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~--~-- 287 (388)
T PRK07366 213 DGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIG-NAQLIQALRQVKAVVDFNQYRGILNGAIAALTG--P-- 287 (388)
T ss_pred CCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcC-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC--c--
Confidence 122222 234689999999999999999999998 899999999888766666544445555554531 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----h-HHHHHHHHhhCeeee
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----D-EDCEKLLRAERIMAR 314 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~l~~~gI~~~ 314 (360)
+.++++.++.++++++.+.+.|++++ +.+..|.+++ |+|+++++ . +.+..+++++||.++
T Consensus 288 ~~~l~~~~~~~~~~r~~l~~~L~~~~-~~~~~p~~g~-------------f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~ 353 (388)
T PRK07366 288 QATVQQTVQIFRQRRDAFINALHQIG-WPVPLPEATM-------------YVWAKLPEPWQGNSVEFCTQLVAQTGVAAS 353 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCeeE-------------EEEEECCcccCCCHHHHHHHHHHhCCEEEe
Confidence 38999999999999999999999884 4555555555 88998864 2 344556678899999
Q ss_pred CCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 315 GGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 315 pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
||..|+. ..+|+||+++.+++++++++++|.+++
T Consensus 354 pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 354 PGSGFGKSGEGYVRFALVHDPDILEEAVERIAAFL 388 (388)
T ss_pred CchHhCcCCCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence 9999975 358999999889999999999998864
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=332.77 Aligned_cols=299 Identities=21% Similarity=0.267 Sum_probs=246.8
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|+++.|. ++||+++++++... |..++++++|++|+|+++++.+++..++++||. |++++|+|+.+..
T Consensus 64 ~~~Y~~~~G~-----~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~----Vlv~~P~y~~~~~ 134 (403)
T PRK08636 64 THGYSVSKGI-----YKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDV----AIVPDPAYPIHSQ 134 (403)
T ss_pred cCCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCE----EEEcCCCCcchHH
Confidence 4569998998 99999999998654 777776547999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCc-c--cccc--------------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEe
Q 018172 103 ETDYLRSGLYKWDGDA-N--TFDK--------------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHD 161 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~-~--~~~~--------------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D 161 (360)
+++..|++++.++++. + +++. .++++++++++||||||.+++. .+.++|+++++++|+|
T Consensus 135 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~D 214 (403)
T PRK08636 135 AFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISD 214 (403)
T ss_pred HHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEe
Confidence 9999999999988642 1 3331 2578999999999999999993 4567788899999999
Q ss_pred ecccCCCC-----CcCCC---CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHh
Q 018172 162 LAYYWPQY-----TPITG---AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKIL 233 (360)
Q Consensus 162 ~ay~~~~~-----~~~~~---~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 233 (360)
|+|.+..+ +++.. ..+++++++||||+||+||+|+||+++ ++++++.+.+.......+.+.+.|.++..++
T Consensus 215 e~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~-~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~ 293 (403)
T PRK08636 215 IAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVG-NKKLVGALKKIKSWLDYGMFTPIQVAATIAL 293 (403)
T ss_pred ccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeC-CHHHHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 99985321 22222 235678899999999999999999998 8999999988876656788888998887766
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc------h-HHHHHHH
Q 018172 234 GIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE------D-EDCEKLL 306 (360)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~l 306 (360)
+. . +.+++++++.++++++.+.+.|++++ +.+..|.+++ |+|+++++ . +.+..++
T Consensus 294 ~~--~--~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~g~-------------~~~~~l~~~~~~~~~~~l~~~ll 355 (403)
T PRK08636 294 DG--D--QSCVEEIRETYRKRRDVLIESFANAG-WELQKPRASM-------------FVWAKIPEPARHLGSLEFSKQLL 355 (403)
T ss_pred hC--c--HHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCcce-------------EEEEECCCccCCCCHHHHHHHHH
Confidence 42 1 48999999999999999999999873 5555565555 78888863 2 4445667
Q ss_pred HhhCeeeeCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 307 RAERIMARGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 307 ~~~gI~~~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
+++||.+.||..|+. ..+++||+++.+++++++++++|++++.+
T Consensus 356 ~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 356 TEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNIKKFLKE 400 (403)
T ss_pred HhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 788999999999975 46899999988999999999999999976
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=337.26 Aligned_cols=296 Identities=18% Similarity=0.185 Sum_probs=247.4
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|+++.|. ++||++++++++... .++++|++|+|+++++.+++..++++||. |++++|+|+.+...+
T Consensus 115 ~~Y~~~~g~-----~~lr~~ia~~~~~~~---~~~~~Iiit~G~~~al~~~~~~l~~pgd~----Vlv~~P~y~~~~~~~ 182 (431)
T PRK15481 115 RLYGDAPVS-----PELHAWAARWLRDDC---PVAFEIDLTSGAIDAIERLLCAHLLPGDS----VAVEDPCFLSSINML 182 (431)
T ss_pred hhcCCcCCC-----HHHHHHHHHHHhhcc---CCcCeEEEecCcHHHHHHHHHHhCCCCCE----EEEeCCCcHHHHHHH
Confidence 469999988 999999999987531 23458999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCCcccccc-------CCCeeEEEEc-CCCCCCcccchH----HHHHHhhhc-CcEEEEeecccCCC---
Q 018172 105 DYLRSGLYKWDGDANTFDK-------NNGAYIEVVN-SPNNPDGTIREA----VLAKVNRSA-EGKLIHDLAYYWPQ--- 168 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~~-------~~~~~~i~~~-~p~NPtG~~~~~----~~~~~~~~~-~~~li~D~ay~~~~--- 168 (360)
+..|++++.++++.++++. +.++|+++++ +||||||.+++. .+.++|+++ ++++|+||+|.+..
T Consensus 183 ~~~g~~~~~v~~~~~g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~ 262 (431)
T PRK15481 183 RYAGFSASPVSVDAEGMQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSP 262 (431)
T ss_pred HHcCCeEEeeccCCCCCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCC
Confidence 9999999999987666543 2468888886 999999999994 566777778 99999999998532
Q ss_pred -CCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 169 -YTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 169 -~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
...+....+++++++||||+|+ ||+|+||+++ ++++++.+.........+.|.++|.++..+++ ...++.++++.
T Consensus 263 ~~~~~~~~~~~vi~~~SfSK~~~-~GlRiG~~i~-~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~--~~~~~~~l~~~ 338 (431)
T PRK15481 263 YHSVIPQTTQRWALIRSVSKALG-PDLRLAFVAS-DSATSARLRLRLNSGTQWVSHLLQDLVYACLT--DPEYQARLAQA 338 (431)
T ss_pred CCCCCcCCCCCEEEEeeeccccC-CCceeEEEeC-CHHHHHHHHHHHhccccCCCHHHHHHHHHHHh--CccHHHHHHHH
Confidence 1222234568999999999999 9999999998 89999999876665556789999999999998 34455789999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCCC--CC
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGAD--AK 324 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~~--~~ 324 (360)
++.++++++.+.+.|+++ ++.+..|.+++ |+|+++++. ..+.+.|.++||.++||..|+.. .+
T Consensus 339 ~~~~~~~r~~~~~~L~~~-~~~~~~p~gg~-------------f~~~~l~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~ 404 (431)
T PRK15481 339 RLFYAQRRQKLARALQQY-GIAIPSPGDGL-------------NLWLPLDTDSQATALTLAKSGWLVREGEAFGVSAPSH 404 (431)
T ss_pred HHHHHHHHHHHHHHHHHc-CCccccCCCeE-------------EEEEECCCCHHHHHHHHHHCCcEEecCCccccCCCCC
Confidence 999999999999999988 44554565555 899999744 66667777899999999999642 46
Q ss_pred eEEEEecC-ChHHHHHHHHHHHHHHhc
Q 018172 325 YARVSMLS-REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 325 ~~R~s~~~-~~e~~~~~~~~l~~~~~~ 350 (360)
++|||++. +++++++++++|.+++++
T Consensus 405 ~iRis~~~~~~~~i~~~~~~l~~~~~~ 431 (431)
T PRK15481 405 GLRITLSTLNDAEINRLAADLHQALNR 431 (431)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHhcC
Confidence 89999987 899999999999998864
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=333.25 Aligned_cols=300 Identities=16% Similarity=0.184 Sum_probs=247.7
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. ++||+++++++.. +|.+++++++|++|+|+++++..++..++++||+ |++++|+|+.+..+
T Consensus 72 ~~Y~~~~G~-----~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~----Vlv~~P~y~~~~~~ 142 (405)
T PRK06207 72 QAYTEYRGD-----ADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDK----VAIVQPDYFANRKL 142 (405)
T ss_pred ccCCCCCCC-----HHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCE----EEEeCCCchhHHHH
Confidence 468888888 9999999998764 4777776458999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCc------ccccc-------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccC
Q 018172 104 TDYLRSGLYKWDGDA------NTFDK-------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYW 166 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~------~~~~~-------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~ 166 (360)
++..|++++.++++. .+++. +.+++++++++||||||.+++. .+.++|+++++++|+||+|.+
T Consensus 143 ~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~ 222 (405)
T PRK06207 143 VEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSR 222 (405)
T ss_pred HHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccc
Confidence 999999999888651 22222 2478999999999999999983 455678889999999999985
Q ss_pred CC-----CCcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCC
Q 018172 167 PQ-----YTPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD 238 (360)
Q Consensus 167 ~~-----~~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (360)
.. ..++. ...+++++++||||+|++||+|+||+++ ++++++.+.........+.+.+.|.++.++++. +
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~-~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~--~ 299 (405)
T PRK06207 223 LLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFG-SPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSE--P 299 (405)
T ss_pred cccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEc-CHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhC--c
Confidence 22 12222 2467899999999999999999999998 899999999888777788888999999998872 2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHH-HhhCeee
Q 018172 239 DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLL-RAERIMA 313 (360)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l-~~~gI~~ 313 (360)
..++++.++.++++++.+.+.|++++++.+..|.+++ |+|++++. ..++.+.| .++||.+
T Consensus 300 --~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~-------------fl~~~l~~~~~~~~~~~~~l~~~~gV~v 364 (405)
T PRK06207 300 --DGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGS-------------YLFPRLPRLAVSLHDFVKILRLQAGVIV 364 (405)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeE-------------EEEEeCcccCCCHHHHHHHHHHhcCEEE
Confidence 2677888888899999999999887666665566555 88888863 24455555 5789999
Q ss_pred eCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 314 RGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 314 ~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
+||..|+. .++++|||++.+++++++++++|.+++++.
T Consensus 365 ~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~l~~~ 403 (405)
T PRK06207 365 TPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQLIERY 403 (405)
T ss_pred eCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 99999964 468999999888999999999999998764
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=332.07 Aligned_cols=297 Identities=16% Similarity=0.220 Sum_probs=244.3
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhhc-CCC-CCCCCcEEEcCChHHHHHHHHHhhcCC---CCCCCceEEEeCCCC
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHVV-DNA-VSDGRHIVIGTGSTQLYQAALYALSSP---GGPEPISVVSAAPYY 97 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~-~~~~~~i~~t~G~t~~l~~~~~~l~~~---gd~~~~~vl~~~p~~ 97 (360)
....|+++.|. ++||++++++++.+ |.+ ++++++|++|+|+++++..++..++++ ||. |+++.|+|
T Consensus 57 ~~~~Y~~~~G~-----~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~----vlv~~P~y 127 (396)
T PRK09147 57 GLASYPTTAGL-----PALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPL----VVCPNPFY 127 (396)
T ss_pred hhcCCCCCCCC-----HHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCE----EEEcCCCc
Confidence 34569988988 99999999998654 777 777568999999999999999999999 777 99999999
Q ss_pred CCcHHHHHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeec
Q 018172 98 SQYPAETDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 98 ~~~~~~~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~a 163 (360)
..+..+++..|++++.++++.+ ++.. .+++++++++|||||||.++++ .+.++|++++++||+||+
T Consensus 128 ~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~ 207 (396)
T PRK09147 128 QIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDEC 207 (396)
T ss_pred cchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeecc
Confidence 9999999999999999998643 3222 2478999999999999999983 455678889999999999
Q ss_pred ccCCCC----Cc---C-------CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHH
Q 018172 164 YYWPQY----TP---I-------TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRA 229 (360)
Q Consensus 164 y~~~~~----~~---~-------~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 229 (360)
|.+..+ ++ . ....+++++++||||.|+++|+|+||+++ ++++++.+.+.+...+.+.+.+.|.++
T Consensus 208 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~a~ 286 (396)
T PRK09147 208 YSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAG-DAALLKKFLLYRTYHGCAMPPAVQAAS 286 (396)
T ss_pred ccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecC-CHHHHHHHHHHhhhcccCCCHHHHHHH
Confidence 985321 11 1 01247899999999999999999999998 899999998877666678889999988
Q ss_pred HHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-ch-HHHHHHHH
Q 018172 230 AKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-ED-EDCEKLLR 307 (360)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~ 307 (360)
.+.+. . +.++.+.++.++++++.+.+.|+++ +.+..|.+++ |+|++++ +. +.+..+++
T Consensus 287 ~~~~~---~--~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~~g~-------------f~~~~~~~~~~~~~~~ll~ 346 (396)
T PRK09147 287 IAAWN---D--EAHVRENRALYREKFDAVTPILAPV--LDVQLPDAGF-------------YLWAKVPGDDTEFARRLYA 346 (396)
T ss_pred HHHhc---c--hhHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCeeE-------------EEEEECCCCHHHHHHHHHH
Confidence 77664 2 2789999999999999999999885 3444555554 8899886 33 45566667
Q ss_pred hhCeeeeCCCCCCC-------CCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 308 AERIMARGGRRFGA-------DAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 308 ~~gI~~~pg~~f~~-------~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
++||.+.||..|+. ..+++|++++.+++++++++++|.++++
T Consensus 347 ~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 347 DYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLAECVEAAERIVDFCR 395 (396)
T ss_pred hCCEEEeCCccccccccCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence 88999999998852 2579999998889999999999999874
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=331.58 Aligned_cols=300 Identities=19% Similarity=0.258 Sum_probs=248.6
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|+++.|. ++||++++++++.+ |..++++++|++|+|++++++.++..++++||+ |++++|+|+.+..
T Consensus 61 ~~~Y~~~~G~-----~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~----Vl~~~P~y~~~~~ 131 (405)
T PRK09148 61 THRYSASKGI-----PGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDV----ILCPNPSYPIHAF 131 (405)
T ss_pred cCCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCE----EEEcCCCCcccHH
Confidence 3569988888 99999999998754 777776558999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCccc-ccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC
Q 018172 103 ETDYLRSGLYKWDGDANT-FDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~~-~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
+++..|++++.++.+.++ +.. .++++++++++||||||.+++. .+.++|+++++++|+||+|.+..
T Consensus 132 ~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~ 211 (405)
T PRK09148 132 GFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIY 211 (405)
T ss_pred HHHhcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhh
Confidence 999999999999876432 211 2578999999999999999993 45677888999999999998522
Q ss_pred -----CCcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCc
Q 018172 169 -----YTPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 169 -----~~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
..++. ...+++++++||||.|++||+|+||+++ ++++++.+.+.+.....+.+.+.|.++..++.. .
T Consensus 212 ~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~-~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~--~-- 286 (405)
T PRK09148 212 FDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVG-NERLIAALTRVKSYLDYGAFTPIQVAATAALNG--P-- 286 (405)
T ss_pred cCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeC-CHHHHHHHHHHHHHhccCCChHHHHHHHHHHhC--c--
Confidence 12222 2345678899999999999999999998 899999999888777788899999999998862 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc------h-HHHHHHHHhhCeee
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE------D-EDCEKLLRAERIMA 313 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~l~~~gI~~ 313 (360)
+.++++.++.++++++.+.+.|++++ +.+..|.+++ |+|++++. . +....+++++||.+
T Consensus 287 ~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~~p~~g~-------------f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v 352 (405)
T PRK09148 287 QDCIAEMRELYKKRRDVLVESFGRAG-WDIPPPAASM-------------FAWAPIPEAFRHLGSLEFSKLLVEKADVAV 352 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-CccCCCCeeE-------------EEEEECCCccCCCCHHHHHHHHHHhCCEEE
Confidence 38899999999999999999999874 4544555554 78888763 2 34455566889999
Q ss_pred eCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 314 RGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 314 ~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
+||..|+. .++++||+++.+++.+++++++|.+++.+.
T Consensus 353 ~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l~~~ 391 (405)
T PRK09148 353 APGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFLSSA 391 (405)
T ss_pred eCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 99999975 368999999878999999999999999754
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=331.21 Aligned_cols=289 Identities=20% Similarity=0.307 Sum_probs=240.5
Q ss_pred CCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhC
Q 018172 30 MGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLR 108 (360)
Q Consensus 30 ~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g 108 (360)
..|. ++||++++++++. +|..++++++|++|+|+++++.+++..++++||. |++++|+|+.+...++..|
T Consensus 68 ~~G~-----~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~----Vlv~~P~y~~~~~~~~~~G 138 (399)
T PRK07681 68 LSGI-----QEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDI----ILVPDPGYTAYETGIQMAG 138 (399)
T ss_pred CCCc-----HHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCE----EEECCCCccchHHHHHhcC
Confidence 4666 9999999999874 4777776468999999999999999999999998 9999999999999999999
Q ss_pred CeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC-----C
Q 018172 109 SGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ-----Y 169 (360)
Q Consensus 109 ~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~-----~ 169 (360)
++++.++++.+ ++.. .+++++|++++||||||.++++ .+.++|+++++++|+||+|.+.. .
T Consensus 139 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~ 218 (399)
T PRK07681 139 ATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKP 218 (399)
T ss_pred CEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCC
Confidence 99999998754 3322 2578999999999999999993 45567888999999999998422 1
Q ss_pred CcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHH
Q 018172 170 TPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEY 246 (360)
Q Consensus 170 ~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 246 (360)
.++. ...+++++++||||+||++|+|+||+++ ++++++.+...+.....+.+.+.|.++.++++. .. .++++
T Consensus 219 ~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~~--~~~~~ 293 (399)
T PRK07681 219 ISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIG-NEEIVRALTQFKSNTDYGVFLPIQKAACAALRN--GA--AFCEK 293 (399)
T ss_pred CChhhCCCCcccEEEEeecccccCCccceeEEEec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC--cH--HHHHH
Confidence 1221 2346789999999999999999999998 899999998887766788999999999998873 22 78999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeCCCCCCC-
Q 018172 247 GRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARGGRRFGA- 321 (360)
Q Consensus 247 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~pg~~f~~- 321 (360)
.++.++++++.+.+.|+++ ++.+..|.+++ |+|+++++. +.+..+++++||.++||..|+.
T Consensus 294 ~~~~~~~~~~~l~~~L~~~-g~~~~~p~~g~-------------f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~ 359 (399)
T PRK07681 294 NRGIYQERRDTLVDGFRTF-GWNVDKPAGSM-------------FVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGPH 359 (399)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCcccCCCeee-------------EEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCcC
Confidence 9999999999999999988 45554555554 888888742 4445555558999999999975
Q ss_pred CCCeEEEEecCChHHHHHHHHHHHH
Q 018172 322 DAKYARVSMLSREEIFNIFLERLSA 346 (360)
Q Consensus 322 ~~~~~R~s~~~~~e~~~~~~~~l~~ 346 (360)
.++++|++++.+++++++++++|++
T Consensus 360 ~~~~iRis~~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 360 GEGFVRIALVQDEEVLQQAVENIRN 384 (399)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHH
Confidence 4679999998888999999999988
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=336.07 Aligned_cols=301 Identities=23% Similarity=0.245 Sum_probs=265.0
Q ss_pred cccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|.++.|. ++||+++++++. .+|+.++++ +|++|+|+++++.+++..+++|||+ |++++|+|....+
T Consensus 125 ~~~y~~~~G~-----~~LR~~ia~~l~~~~g~~~~~~-~IiiT~G~q~al~l~~~~l~~pGd~----v~vE~PtY~~~~~ 194 (459)
T COG1167 125 ALQYGPTAGL-----PELREAIAAYLLARRGISCEPE-QIVITSGAQQALDLLLRLLLDPGDT----VLVEDPTYPGALQ 194 (459)
T ss_pred hhcCCCCCCc-----HHHHHHHHHHHHHhcCCccCcC-eEEEeCCHHHHHHHHHHHhCCCCCE----EEEcCCCcHHHHH
Confidence 4568888988 999999999987 889999987 9999999999999999999999999 9999999999999
Q ss_pred HHHHhCCeeeeecCCccccccC--------CCeeEEEE-cCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC-
Q 018172 103 ETDYLRSGLYKWDGDANTFDKN--------NGAYIEVV-NSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ- 168 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~~~~~~--------~~~~~i~~-~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~- 168 (360)
+++..|.+++.+++|.+|++.+ .++|++++ ++-+||||.+|| +.+.++|+++|++||+||.|++..
T Consensus 195 ~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~ 274 (459)
T COG1167 195 ALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRY 274 (459)
T ss_pred HHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhc
Confidence 9999999999999999998873 25787755 578999999999 367788888999999999999522
Q ss_pred ----CCcCC--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 169 ----YTPIT--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 169 ----~~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
.+++. +..+++|+++||||+++ ||+|+||+++ ++++++.+...+...+.+++.+.|.+++..+. .+.+++
T Consensus 275 ~~~p~~~l~~ld~~~rViy~gSFSK~l~-PglRlG~vv~-p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~--~G~~~~ 350 (459)
T COG1167 275 DGPPPPPLKALDAPGRVIYLGSFSKTLA-PGLRLGYVVA-PPELIEKLLRLKQAADLGPSSLSQAALAAFLL--SGHYDR 350 (459)
T ss_pred CCCCCCChHhhCCCCCEEEEeeehhhcc-cccceeeeeC-CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH--cCCHHH
Confidence 22222 45689999999999998 9999999999 89999999999999999999999999999888 567889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--CcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeC-C
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSG--VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARG-G 316 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~p-g 316 (360)
|++++++.|++|++.+.+.|.++. ...+..|.+++ |+|+++++. ..+.+.+.++|+.+.| |
T Consensus 351 hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~-------------flwl~l~~~~~~~~l~~~a~~~gv~i~~~g 417 (459)
T COG1167 351 HLRRLRREYARRRDALLEALAEYLPELATWTRPEGGL-------------FLWLELPEGIDARELLAAALEKGVVVTPLG 417 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceE-------------EEEEEcCCCCCHHHHHHHHHHCCCEEEcCC
Confidence 999999999999999999999984 56666666665 999999875 6788888899999999 9
Q ss_pred CCCCC---CCCeEEEEecC-ChHHHHHHHHHHHHHHhch
Q 018172 317 RRFGA---DAKYARVSMLS-REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 317 ~~f~~---~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~ 351 (360)
..|.. ..+++|++++. ++|++++++++|.+.+.+.
T Consensus 418 ~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~~ 456 (459)
T COG1167 418 SAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLREA 456 (459)
T ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 88854 34589999988 8999999999999998764
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=331.48 Aligned_cols=302 Identities=18% Similarity=0.245 Sum_probs=242.6
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. ++||++++++++. ++..++++ +|++|+|+++++.+++..++++||+ |++++|+|+.+...
T Consensus 102 ~~Y~~~~G~-----~~lR~aiA~~~~~~~~~~~~~~-~I~it~G~~~al~~~~~~l~~pGd~----Vlv~~P~y~~y~~~ 171 (462)
T PLN02187 102 NSYGPGAGI-----LPARRAVADYMNRDLPHKLTPE-DIFLTAGCNQGIEIVFESLARPNAN----ILLPRPGFPHYDAR 171 (462)
T ss_pred CCCCCCCCh-----HHHHHHHHHHHHHhcCCCCCcc-cEEEeCCHHHHHHHHHHHhcCCCCE----EEEeCCCCccHHHH
Confidence 468888888 9999999999864 46667664 8999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCc-c--cccc-------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCC
Q 018172 104 TDYLRSGLYKWDGDA-N--TFDK-------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~-~--~~~~-------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
++..|++++.+++.. + +++. ++++++++++|||||||.++++ .+.++|+++++++|+||+|.+..+
T Consensus 172 ~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f 251 (462)
T PLN02187 172 AAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIF 251 (462)
T ss_pred HHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEecccccccc
Confidence 999999999887632 1 2221 3578999999999999999983 455678889999999999985322
Q ss_pred -----CcCC--CCCCccEEEeccccccCCCCceEEEEeecCHH----HHHHHHHHHhhccc--cCChHHHHHHHHHhccc
Q 018172 170 -----TPIT--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTE----VARKMTRFIELGSI--GVSKESQLRAAKILGIV 236 (360)
Q Consensus 170 -----~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~----~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~ 236 (360)
.++. ....++++++||||.|++||+|+||+++++++ +++.+...+..... +++.+.|.++.++++.
T Consensus 252 ~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~- 330 (462)
T PLN02187 252 GDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEK- 330 (462)
T ss_pred CCCCceeHHHhccCCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhc-
Confidence 1222 12246899999999999999999999984443 34566666655444 4588999999998873
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCCcccccccccCCCCCCcccccCC--------ch-HHHHHHH
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFG-LPEYPLEYCNFTGKFTNSHPGFAWLESK--------ED-EDCEKLL 306 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~l 306 (360)
..+.++++.++.++++++++.+.|+++++.. ...|.+++ |+|++++ +. +++.+++
T Consensus 331 --~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~-------------fl~~~l~~~~~~~~~~~~~~~~~ll 395 (462)
T PLN02187 331 --ADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCT-------------YLLTKLELSLMDNIKDDIDFCVKLA 395 (462)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeE-------------EEEeecChhhCCCCCCHHHHHHHHH
Confidence 1248999999999999999999999986543 23455555 6776543 23 6677888
Q ss_pred HhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhchhc
Q 018172 307 RAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 307 ~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~~ 353 (360)
.++||.++||..|+. ++|+||+++.+++.+++++++|.+++++..+
T Consensus 396 ~~~gV~v~pG~~fg~-~~~iRis~~~~~e~l~~al~rL~~~l~~~~~ 441 (462)
T PLN02187 396 REENLVFLPGDALGL-KNWMRITIGVEAHMLEDALERLKGFCTRHAK 441 (462)
T ss_pred hhCCEEEECccccCC-CCeEEEEeCCCHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999985 7899999988999999999999999987543
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=327.00 Aligned_cols=296 Identities=21% Similarity=0.293 Sum_probs=248.1
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|++..|. ++||++++++++. + .+++|++|+|+++++.+++.+++++||+ |+++.|+|..+..++
T Consensus 56 ~~Y~~~~G~-----~~lr~~ia~~~~~----~-~~~~vi~t~G~~~al~~~~~~l~~~gd~----Vl~~~P~y~~~~~~~ 121 (373)
T PRK07324 56 LTYGWIEGS-----PEFKEAVASLYQN----V-KPENILQTNGATGANFLVLYALVEPGDH----VISVYPTYQQLYDIP 121 (373)
T ss_pred ccCCCCCCC-----HHHHHHHHHHhcC----C-ChhhEEEcCChHHHHHHHHHHhCCCCCE----EEEcCCCchhHHHHH
Confidence 358888888 9999999998752 2 4469999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC--
Q 018172 105 DYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ-- 168 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~-- 168 (360)
+..|++++.++.+.+ ++.. .+++|++++++||||||.+++ +.+.++|+++|+++|+||+|.+..
T Consensus 122 ~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~ 201 (373)
T PRK07324 122 ESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDED 201 (373)
T ss_pred HHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccC
Confidence 999999999987643 3322 368899999999999999998 345567888999999999998522
Q ss_pred --CCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHH
Q 018172 169 --YTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEY 246 (360)
Q Consensus 169 --~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 246 (360)
..++.+..+++++++||||.||++|+|+||+++ ++++++.+.+.+...+.+.+.+.|.++..+++. .+.++++
T Consensus 202 ~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~-~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~----~~~~l~~ 276 (373)
T PRK07324 202 GSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAA-NEEVIDILRKYRDYTMICAGVFDDMLASLALEH----RDAILER 276 (373)
T ss_pred CCCCChhhccCCEEEEecchhhcCCccceeEEEec-CHHHHHHHHHHhCcEEecCChHHHHHHHHHHcC----HHHHHHH
Confidence 333445567889999999999999999999999 899999999998877788999999999888762 2478999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-ch-HHHHHHHHhhCeeeeCCCCCCCCCC
Q 018172 247 GRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-ED-EDCEKLLRAERIMARGGRRFGADAK 324 (360)
Q Consensus 247 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~~~gI~~~pg~~f~~~~~ 324 (360)
.++.++++++.+.+.|++++++.+..|.++++. |++++.+ +. +++.++++++||.++||+.|+. ++
T Consensus 277 ~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~-----------~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~-~~ 344 (373)
T PRK07324 277 NRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTS-----------FVKLDVDMPSEDFCLKLLKETGVLLVPGNRFDL-EG 344 (373)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEECCCceEEE-----------EEEeCCCCCHHHHHHHHHHhcCEEEECccccCC-CC
Confidence 999999999999999998877776777766533 3444433 23 5666777889999999999985 67
Q ss_pred eEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 325 YARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 325 ~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
++|+|++.+++.+++++++|++++++.
T Consensus 345 ~iRis~~~~~~~l~~~l~rl~~~l~~~ 371 (373)
T PRK07324 345 HVRIGYCCDTETLKKGLKKLSEFLREF 371 (373)
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 999999889999999999999998763
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=326.83 Aligned_cols=295 Identities=19% Similarity=0.258 Sum_probs=243.5
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|+++.|. ++||+++++|++. .|.+++++++|++|+|+++++..++..++++||+ |++++|+|+.+..
T Consensus 60 ~~~Y~~~~G~-----~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~----vlv~~P~y~~~~~ 130 (383)
T TIGR03540 60 NHRYPSYEGM-----LAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDI----VLVPDPGYPVYRI 130 (383)
T ss_pred CCCCCCCCCC-----HHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCE----EEEeCCCCcchHH
Confidence 3569988888 9999999999874 4666666657999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC
Q 018172 103 ETDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
+++..|++++.++.+.+ ++.. .+++++|++++||||||.+++ +++.++|+++++++|+||+|.+..
T Consensus 131 ~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~ 210 (383)
T TIGR03540 131 GTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEIT 210 (383)
T ss_pred HHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhc
Confidence 99999999999998743 4422 357899999999999999999 356678888999999999998422
Q ss_pred -----CCcCCC---CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCc
Q 018172 169 -----YTPITG---AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 169 -----~~~~~~---~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
..++.. ..+++++++||||.||++|+|+||+++ ++++++.+.........+.+.+.|.++.++++. .
T Consensus 211 ~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~-- 285 (383)
T TIGR03540 211 FDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVG-NADLIAGLGKVKTNVDSGVFQAIQYAAIAALNG--P-- 285 (383)
T ss_pred cCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeC-CHHHHHHHHHHHHhcccCCChHHHHHHHHHHhC--C--
Confidence 222221 245789999999999999999999998 899999998877666677888999999888873 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARGG 316 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~pg 316 (360)
..++++.++.++++++.+.+.|+++ ++.+..+.+++ |+|+++++. +.+..+++++||.++||
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g 351 (383)
T TIGR03540 286 QDVVKEIRKIYQRRRDLLLEALKKI-GIDVEKPKATF-------------YVWVPVPEGYTSAEFAARLLEETGVVVTPG 351 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCEecCCCcce-------------EEEEECCCCCCHHHHHHHHHHHCCEEEecc
Confidence 3889999999999999999999998 45555555444 688888742 44455567889999999
Q ss_pred CCCCC-CCCeEEEEecCChHHHHHHHHHHHH
Q 018172 317 RRFGA-DAKYARVSMLSREEIFNIFLERLSA 346 (360)
Q Consensus 317 ~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~ 346 (360)
..|+. .++++||+++.+++++++++++|.+
T Consensus 352 ~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 352 VGFGEYGEGYIRISLTVPDERLEEAVARIKK 382 (383)
T ss_pred hhhCccCCCeEEEEecCCHHHHHHHHHHHhh
Confidence 99975 3679999998788999999988865
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=326.65 Aligned_cols=294 Identities=20% Similarity=0.271 Sum_probs=241.7
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|+++.|. ++||+++++|++.. |..++++++|++|+|++++++.++..++++||+ |++++|+|+.+...
T Consensus 63 ~~Y~~~~G~-----~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~----Vl~~~P~y~~~~~~ 133 (385)
T PRK09276 63 HQYPSYEGM-----LEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDV----VLVPDPGYPVYKIG 133 (385)
T ss_pred CCCCCCCCc-----HHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCE----EEEcCCCCcChHHH
Confidence 468888887 99999999998754 666777656999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC-
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ- 168 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~- 168 (360)
++..|++++.++.+.+ ++.. ..++++|++++||||||.+++ +.+.++|+++++++|+||+|.+..
T Consensus 134 ~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 213 (385)
T PRK09276 134 TIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAY 213 (385)
T ss_pred HHHcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheec
Confidence 9999999999987643 4432 347899999999999999999 355677888999999999998422
Q ss_pred ----CCcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCch
Q 018172 169 ----YTPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 169 ----~~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
..++. ...+++++++||||.||++|+|+||+++ ++++++.+.+.+.....+.+.+.|.++..++.. . +
T Consensus 214 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~--~ 288 (385)
T PRK09276 214 DGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVG-NADLIAGLGKVKSNVDSGVFQAIQEAGIAALNG--P--Q 288 (385)
T ss_pred CCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeC-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcC--c--H
Confidence 12222 2246789999999999999999999998 899999998887666667888899999888862 2 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHH-HHHHHHhhCeeeeCCC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DED-CEKLLRAERIMARGGR 317 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~l~~~gI~~~pg~ 317 (360)
.++++.++.++++++.+.+.|+++ ++.+..|.+++ |+|+++++ ... +..+++++||.++||.
T Consensus 289 ~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~-------------~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~ 354 (385)
T PRK09276 289 EVVEELRKIYQERRDILVEGLRKL-GLEVEPPKATF-------------YVWAPVPKGYTSAEFATLLLDKAGVVVTPGN 354 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcce-------------EEEEECCCCCCHHHHHHHHHHhCCEEECCch
Confidence 889999999999999999999988 45555555544 68888874 244 4555667899999999
Q ss_pred CCCC-CCCeEEEEecCChHHHHHHHHHHHH
Q 018172 318 RFGA-DAKYARVSMLSREEIFNIFLERLSA 346 (360)
Q Consensus 318 ~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~ 346 (360)
.|+. .++++||+++.+++++++++++|.+
T Consensus 355 ~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 355 GFGEYGEGYFRIALTVPDERIEEAVERIKK 384 (385)
T ss_pred hhCCCCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence 8875 3679999998788899999988864
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=326.39 Aligned_cols=296 Identities=23% Similarity=0.289 Sum_probs=241.9
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|++..|. ++||++++++++. +|.+++++++|++|+|+++++..++..++++||+ |++++|+|+.+..
T Consensus 63 ~~~Y~~~~g~-----~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~----vlv~~P~y~~~~~ 133 (389)
T PRK08068 63 NHKYSPFRGY-----PFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDT----ILVPDPGYPDYLS 133 (389)
T ss_pred CCCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCE----EEEcCCCCcchHH
Confidence 3568888887 9999999999763 4766776547999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC
Q 018172 103 ETDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
.++..|++++.++.+.+ ++.. ..++++|++++||||||.++++ .+.++|+++++++|+||+|.+..
T Consensus 134 ~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~ 213 (389)
T PRK08068 134 GVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIG 213 (389)
T ss_pred HHHhcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhc
Confidence 99999999999998753 5532 2578999999999999999993 45567888999999999997421
Q ss_pred C-----CcC---CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCc
Q 018172 169 Y-----TPI---TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 169 ~-----~~~---~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
+ .+. .+..+++++++||||+||++|+|+||+++ ++++++.+.+.......+.+++.|.++.+++. .+.
T Consensus 214 ~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~-~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~--~~~- 289 (389)
T PRK08068 214 FDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVG-NESVIEAINLLQDHLFVSLFGAIQDAAIEALL--SDQ- 289 (389)
T ss_pred cCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEec-CHHHHHHHHHHHhhccCCCChHHHHHHHHHHh--CcH-
Confidence 1 121 12345789999999999999999999998 89999999888876667777778888888775 233
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHH-hhCeeeeCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLR-AERIMARGG 316 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~-~~gI~~~pg 316 (360)
.++++.++.++++++.+.+.|+.++ +.+..|.|++ |+|+++++ .+.+.+.|. ++||.++||
T Consensus 290 -~~~~~~~~~~~~~r~~~~~~L~~~g-~~~~~~~g~~-------------~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg 354 (389)
T PRK08068 290 -SCVAELVARYESRRNAFISACREIG-WEVDAPKGSF-------------FAWMPVPKGYTSEQFADLLLEKAHVAVAPG 354 (389)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCeeE-------------EEEEECCCCCCHHHHHHHHHHhCCEEEecc
Confidence 8899999999999999999999884 4555555554 78888864 355555555 579999999
Q ss_pred CCCCC-CCCeEEEEecCChHHHHHHHHHHHHH
Q 018172 317 RRFGA-DAKYARVSMLSREEIFNIFLERLSAI 347 (360)
Q Consensus 317 ~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~ 347 (360)
..|+. .++++||+++.+++.+++++++|.++
T Consensus 355 ~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 386 (389)
T PRK08068 355 NGFGEHGEGYVRVGLLTDEERLREAVERIGKL 386 (389)
T ss_pred hHhCccCCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence 99975 46799999987888888888888753
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=326.66 Aligned_cols=296 Identities=21% Similarity=0.282 Sum_probs=245.2
Q ss_pred cccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|+++.|. ++||++++++++ .+|..+++ ++|++|+|+++++..++.+++++||+ |++++|+|..+..
T Consensus 59 ~~~Y~~~~G~-----~~lr~~ia~~~~~~~~~~~~~-~~i~it~G~~~al~~~~~~~~~~gd~----vlv~~p~y~~~~~ 128 (384)
T PRK06348 59 HTRYTDSGGD-----VELIEEIIKYYSKNYDLSFKR-NEIMATVGACHGMYLALQSILDPGDE----VIIHEPYFTPYKD 128 (384)
T ss_pred CCCCCCCCCc-----HHHHHHHHHHHHHHhCCCCCh-hhEEEcCChHHHHHHHHHHhcCCCCE----EEEeCCCCcchHH
Confidence 3569999998 999999999985 45767776 58999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCC-cccccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC
Q 018172 103 ETDYLRSGLYKWDGD-ANTFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~-~~~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
.++..|.+++.++.+ .+++.. .+++++|++++||||||.+++ +.+.++|+++++++|+||+|.+..
T Consensus 129 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 208 (384)
T PRK06348 129 QIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFS 208 (384)
T ss_pred HHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccce
Confidence 999999999988763 233221 357899999999999999998 345677888999999999998532
Q ss_pred ----CCcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCch
Q 018172 169 ----YTPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 169 ----~~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
..++. ...+++++++||||+|++||+|+||+++ ++++++.+...+.....+.+.+.|.++..++.. . +
T Consensus 209 ~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~--~ 283 (384)
T PRK06348 209 FYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIA-PDYIIETAKIINEGICFSAPTISQRAAIYALKH--R--D 283 (384)
T ss_pred eCCCccchhhcCCCcCcEEEEecchhccCCccccceeeec-CHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhC--c--H
Confidence 12222 2357899999999999999999999999 899999998888777788999999999988863 2 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hH-HHHHHHHhhCeeeeCC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DE-DCEKLLRAERIMARGG 316 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~l~~~gI~~~pg 316 (360)
.++++.++.++++++.+.+.|+.++++.+..|.+++ |+|++++. .. .+..+++++||.+.||
T Consensus 284 ~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~-------------~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg 350 (384)
T PRK06348 284 TIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSI-------------YAFINIKKTGLSSVEFCEKLLKEAHVLVIPG 350 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeE-------------EEEEecccCCCCHHHHHHHHHHhCCEEEcCc
Confidence 889999999999999999999988666656666665 67887752 24 4445556789999999
Q ss_pred CCCCC-CCCeEEEEecCChHHHHHHHHHHHHH
Q 018172 317 RRFGA-DAKYARVSMLSREEIFNIFLERLSAI 347 (360)
Q Consensus 317 ~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~ 347 (360)
+.|+. .++++|++++.+++++++++++|+++
T Consensus 351 ~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 351 KAFGESGEGYIRLACTVGIEVLEEAFNRIEKM 382 (384)
T ss_pred hhhccCCCCeEEEEecCCHHHHHHHHHHHHhh
Confidence 99975 36799999987899999999999765
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=328.53 Aligned_cols=302 Identities=19% Similarity=0.251 Sum_probs=244.0
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
+.|++..|. ++||++++++++. .+..+++ ++|++|+|+++++++++..+.++||+ |+++.|+|+.|...
T Consensus 88 ~~Y~~~~G~-----~~lr~aia~~~~~~~~~~~~~-~~v~it~G~~~al~l~~~~l~~~Gd~----Vlv~~P~y~~y~~~ 157 (430)
T PLN00145 88 NSYSTCVGL-----LPARRAIAEYLSRDLPYELST-DDIYLTAGCAQAIEIIMSVLAQPGAN----ILLPRPGYPLYEAR 157 (430)
T ss_pred CCCCCCccC-----HHHHHHHHHHHhhccCCCCCh-hhEEEeCCHHHHHHHHHHHhcCCCCE----EEEcCCCCccHHHH
Confidence 468888888 9999999999864 4666665 58999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCC
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
+...|++++.++++.+ ++.. +++++++++++||||||.++++ .+.++|+++|+++|+||+|.+..+
T Consensus 158 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~ 237 (430)
T PLN00145 158 AVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTF 237 (430)
T ss_pred HHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhcc
Confidence 9999999998875322 2222 4688999999999999999982 455678889999999999985221
Q ss_pred -----CcC--CCCCCccEEEeccccccCCCCceEEEEeec-CHHHH------HHHHHHHhhccccCChHHHHHHHHHhcc
Q 018172 170 -----TPI--TGAADHDIMLFTLSKCTGHAGSRIGWALVK-DTEVA------RKMTRFIELGSIGVSKESQLRAAKILGI 235 (360)
Q Consensus 170 -----~~~--~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~-~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (360)
.++ .....++++++||||.|++||||+||+++. +..++ +.+..... ...+++.+.|.++..+++.
T Consensus 238 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~ 316 (430)
T PLN00145 238 GSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLN-ISTDPATFVQGAIPQIIAN 316 (430)
T ss_pred CCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhc-ccCCCCHHHHHHHHHHHhc
Confidence 222 133568999999999999999999999973 33333 34444432 3446788999999998873
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccC-CCCCcccccccccCCCCCCcccccCC--------ch-HHHHHH
Q 018172 236 VSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLP-EYPLEYCNFTGKFTNSHPGFAWLESK--------ED-EDCEKL 305 (360)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~ 305 (360)
..+.++++.++.++++++.+.+.|+.++++.+. .|.|++ |+|++++ +. +++.++
T Consensus 317 ---~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~-------------y~~v~l~~~~~~~~~~~~~~~~~l 380 (430)
T PLN00145 317 ---TKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSM-------------FVMVKLDLSCLSGIKDDMDFCCKL 380 (430)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeee-------------EEEeccChhhcCCCCCHHHHHHHH
Confidence 224899999999999999999999998776643 577776 6777664 23 567788
Q ss_pred HHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhchhcc
Q 018172 306 LRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGSISN 354 (360)
Q Consensus 306 l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~~~ 354 (360)
++++||.+.||..|+. ++|+||+++.+++.+++++++|.+++.+.++.
T Consensus 381 l~~~gV~v~pG~~fg~-~~~lRis~~~~~~~l~~al~rl~~~~~~~~~~ 428 (430)
T PLN00145 381 AKEESVVVLPGSALGM-KNWLRITFAIDPPSLEDGLERLKSFCLRHAKL 428 (430)
T ss_pred HHhCCEEEeCccccCC-CCeEEEEeCCCHHHHHHHHHHHHHHHHHhccc
Confidence 8899999999999985 78999999889999999999999999887654
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=324.04 Aligned_cols=298 Identities=19% Similarity=0.243 Sum_probs=244.4
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. +++|++++++++. +|..+++ ++|++|+|++++++.++..++++||+ |++++|+|+.+...
T Consensus 63 ~~Y~~~~g~-----~~lr~~ia~~~~~~~g~~~~~-~~i~it~G~~~al~~~~~~~~~~gd~----vlv~~p~y~~~~~~ 132 (387)
T PRK08960 63 TRYTAARGL-----PALREAIAGFYAQRYGVDVDP-ERILVTPGGSGALLLASSLLVDPGKH----WLLADPGYPCNRHF 132 (387)
T ss_pred CccCCCCCC-----HHHHHHHHHHHHHHhCCCCCh-hhEEEccCcHHHHHHHHHHhcCCCCE----EEEcCCCCcchHHH
Confidence 358888887 9999999999864 4666666 58999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC-
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ- 168 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~- 168 (360)
+...|.+++.++++.+ ++.. +++++++++++||||||.+++. .+.++|+++++++|+||+|.+..
T Consensus 133 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~ 212 (387)
T PRK08960 133 LRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTY 212 (387)
T ss_pred HHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 9999999998887654 2222 3578899999999999999983 34567888999999999998532
Q ss_pred ---CCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHH
Q 018172 169 ---YTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFE 245 (360)
Q Consensus 169 ---~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (360)
..+.....+++++++||||+||++|+|+||+++ ++++++.+.+.......+.+.+.|.++.+++.. ..+.+++
T Consensus 213 ~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~---~~~~~l~ 288 (387)
T PRK08960 213 GVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVA-PPAAVPELEKLAQNLYISASTPAQHAALACFEP---ETLAILE 288 (387)
T ss_pred CCCCCChhhccCCEEEEeecccccCCcccEEEEEEc-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhc---CcHHHHH
Confidence 223334556899999999999999999999999 899999998887767788899999999888862 2348999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----h-HHHHHHHHhhCeeeeCCCCCC
Q 018172 246 YGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----D-EDCEKLLRAERIMARGGRRFG 320 (360)
Q Consensus 246 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~gI~~~pg~~f~ 320 (360)
+.++.++++++.+.+.|++++......|.+++ |+|+++++ . +.+..+++++||.++||+.|+
T Consensus 289 ~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~-------------f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 355 (387)
T PRK08960 289 ARRAEFARRRDFLLPALRELGFGIAVEPQGAF-------------YLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFG 355 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeE-------------EEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhC
Confidence 99999999999999999988432223455544 78888863 2 344456678899999999997
Q ss_pred C--CCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 321 A--DAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 321 ~--~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
. ..+++|++++.+.+.+++++++|.++++
T Consensus 356 ~~~~~~~iRi~~~~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 356 RHQAGQHVRFAYTQSLPRLQEAVERIARGLR 386 (387)
T ss_pred CCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 5 3579999998888999999999988765
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=324.01 Aligned_cols=292 Identities=18% Similarity=0.231 Sum_probs=237.6
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhc--CCCCCCCceEEEeCCCCCC
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALS--SPGGPEPISVVSAAPYYSQ 99 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~--~~gd~~~~~vl~~~p~~~~ 99 (360)
....|+++.|. ++||++++++++.+ |.++++ ++|++|+|+++++..++..++ ++||. |+++.|+|+.
T Consensus 52 ~~~~Y~~~~G~-----~~lr~aia~~l~~~~g~~~~~-~~I~it~G~~~al~~~~~~~~~~~~gd~----vlv~~P~y~~ 121 (374)
T PRK05839 52 LLNKYPKSAGE-----ESLREAQRGFFKRRFKIELKE-NELIPTFGTREVLFNFPQFVLFDKQNPT----IAYPNPFYQI 121 (374)
T ss_pred ccCCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCc-ceEEEecCcHHHHHHHHHHHhcCCCCCE----EEECCCCchh
Confidence 34679999998 99999999998654 777776 589999999999999888764 46887 9999999999
Q ss_pred cHHHHHHhCCeeeeecCCc-cccccC------CCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC
Q 018172 100 YPAETDYLRSGLYKWDGDA-NTFDKN------NGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 100 ~~~~~~~~g~~~~~~~~~~-~~~~~~------~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
+...++..|++++.++.+. +++..+ .++++++++|||||||.++++ .+.++|+++|+++|+||+|.+..
T Consensus 122 ~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~ 201 (374)
T PRK05839 122 YEGAAIASRAKVLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIY 201 (374)
T ss_pred hHHHHHhcCCEEEEeecccccCCcCCcchhhhccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcc
Confidence 9999999999999999873 344432 368999999999999999993 45567888999999999998521
Q ss_pred ----CCcCC--------CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhccc
Q 018172 169 ----YTPIT--------GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 169 ----~~~~~--------~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
.+++. ...+++++++||||+|++||+|+||+++ ++++++.+.......+.+.+.+.|.++.+++.
T Consensus 202 ~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~-- 278 (374)
T PRK05839 202 ENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAG-DASILKKYKAYRTYLGCASPLPLQKAAAVAWL-- 278 (374)
T ss_pred cCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEec-CHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc--
Confidence 12211 1336899999999999999999999998 89999999887766667888999998887775
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeC
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARG 315 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~p 315 (360)
++ .++++.++.++++++.+.+.|. .. .|.++ +|+|+++++. +.+..+++++||.++|
T Consensus 279 -~~--~~~~~~~~~~~~~~~~~~~~l~----~~--~p~gg-------------~fi~~~~~~~~~~~~~l~~~~gi~v~p 336 (374)
T PRK05839 279 -DD--EHAEFFRNIYAKNLKLAREILG----IT--IPPAT-------------FYVWLPVDNDEEFTKKLYQNEGIKVLP 336 (374)
T ss_pred -cc--hHHHHHHHHHHHHHHHHHHhcC----CC--CCCee-------------EEEEEeCCChHHHHHHHHHHCCEEEeC
Confidence 33 8899999999999998887652 11 34444 4899999766 4455555569999999
Q ss_pred CCCCCC---CCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 316 GRRFGA---DAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 316 g~~f~~---~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
|..|+. .++|+|+|++.+++++++++++|.++++
T Consensus 337 g~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 337 GSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred chhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence 988864 2689999998799999999999999874
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=323.42 Aligned_cols=293 Identities=17% Similarity=0.231 Sum_probs=242.1
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|+++.|. ++||+++++++.. .|...+++++|++|+|+++++..++..++++||+ |++++|+|..+..+
T Consensus 60 ~~Y~~~~G~-----~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~----Vlv~~p~y~~~~~~ 130 (384)
T PRK12414 60 NQYAPMAGI-----AALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDE----VIYFEPSFDSYAPI 130 (384)
T ss_pred CCcCCCCCc-----HHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCE----EEEeCCCccchHHH
Confidence 569888998 9999999998764 4766666568999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcccccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC--
Q 018172 104 TDYLRSGLYKWDGDANTFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ-- 168 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~-- 168 (360)
++..|.+++.++++.+++.. ++++++|++++||||||.+++ +.+.++|+++++++|+||+|.+..
T Consensus 131 ~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~ 210 (384)
T PRK12414 131 VRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFD 210 (384)
T ss_pred HHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCC
Confidence 99999999999877544322 357899999999999999998 245567788999999999998422
Q ss_pred ---CCcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 169 ---YTPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 169 ---~~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
..++. ...+++++++||||.||+||+|+||+++ ++++++.+.+......++.+.+.|.++..+++. . .
T Consensus 211 ~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~-~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~---~--~ 284 (384)
T PRK12414 211 GARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLA-PAELMDEIRKVHQFMVFSADTPMQHAFAEALAE---P--A 284 (384)
T ss_pred CCCccCcccCcCccCcEEEEecccccccCccceEEEEec-CHHHHHHHHHHHhheecCCCcHHHHHHHHHhcC---C--h
Confidence 11222 2346899999999999999999999999 899999999888777889999999999998872 2 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----h-HHHHHHHHhhCeeeeCC
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----D-EDCEKLLRAERIMARGG 316 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~l~~~gI~~~pg 316 (360)
+..+.++.++++++.+.+.|++++ +.+..+.|++ |+|++++. . +.+.++|.++||.+.||
T Consensus 285 ~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~gg~-------------~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg 350 (384)
T PRK12414 285 SYLGLGAFYQRKRDLLARELAGSR-FELLPSEGSF-------------FMLARFRHFSDESDSDFVLRLIRDARVATIPL 350 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CeecCCCcce-------------EEEEcccccCCCCHHHHHHHHHHhCCEEEecc
Confidence 445688999999999999999984 5555566665 67776542 2 66668888999999999
Q ss_pred CCCCC---CCCeEEEEecCChHHHHHHHHHHHH
Q 018172 317 RRFGA---DAKYARVSMLSREEIFNIFLERLSA 346 (360)
Q Consensus 317 ~~f~~---~~~~~R~s~~~~~e~~~~~~~~l~~ 346 (360)
..|+. ..+++|++++.++|++++++++|.+
T Consensus 351 ~~f~~~~~~~~~iRis~~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 351 SAFYTDGTDTGLIRLSFSKDDATLVEGARRLCS 383 (384)
T ss_pred hhhcCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 98853 2579999998899999999999875
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=325.05 Aligned_cols=300 Identities=17% Similarity=0.221 Sum_probs=246.7
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|++..|. ++||++++++++.. |..++++++|++|+|+++++++++..++++||+ |++++|+|+.+..
T Consensus 50 ~~~Y~~~~g~-----~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~----vl~~~p~y~~~~~ 120 (378)
T PRK07682 50 YTSYTANAGL-----LELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDE----VLIVEPSFVSYAP 120 (378)
T ss_pred CCCCCCCCCc-----HHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCE----EEEeCCCchhhHH
Confidence 3558888887 99999999998754 777776668999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcc---cccc-------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC
Q 018172 103 ETDYLRSGLYKWDGDAN---TFDK-------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~---~~~~-------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
.++..|.+++.++.+.+ +++. .++++++++++||||||.+++. .+.++|+++++++|+||+|.+..
T Consensus 121 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~ 200 (378)
T PRK07682 121 LVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELT 200 (378)
T ss_pred HHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcc
Confidence 99999999998876521 2221 3578999999999999999983 45677888999999999998532
Q ss_pred C-------CcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCch
Q 018172 169 Y-------TPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 169 ~-------~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
+ ..+.+..++++++.||||.|++||+|+||+++ ++++++.+.+.......+.+.+.|.++.++++. ..
T Consensus 201 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~--~~-- 275 (378)
T PRK07682 201 YDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAA-PVYFSEAMLKIHQYSMMCAPTMAQFAALEALRA--GN-- 275 (378)
T ss_pred cCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhc-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhC--Ch--
Confidence 2 11223347899999999999999999999998 899999998877666678899999999998872 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC----ch-HHHHHHHHhhCeeeeCC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK----ED-EDCEKLLRAERIMARGG 316 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~l~~~gI~~~pg 316 (360)
.++++.++.++++++++.+.|+++ ++.+..|.|++ |+|+.++ +. +....+++++||.++||
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~g~~-------------~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg 341 (378)
T PRK07682 276 DDVIRMRDSYRKRRNFFVTSFNEI-GLTCHVPGGAF-------------YAFPSISSTGLSSEEFAEQLLLEEKVAVVPG 341 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCccCCCCeeE-------------EEEEeccCCCCCHHHHHHHHHHhCCEEEcCc
Confidence 678999999999999999999998 45666666665 6777653 22 44445566789999999
Q ss_pred CCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 317 RRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 317 ~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
..|+. .++++|||++.+++++++++++|++++++.
T Consensus 342 ~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 342 SVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred hhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 99975 368999999888999999999999998754
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=328.76 Aligned_cols=302 Identities=18% Similarity=0.306 Sum_probs=242.1
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhh-cCC--CCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHV-VDN--AVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ 99 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~--~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~ 99 (360)
.+.+|++..|. ++||+++++|++. ++. ++++ ++|++|+|+++++..++.+++++||. |++++|+|+.
T Consensus 78 ~l~~Y~~~~G~-----~~LR~aiA~~l~~~~~~~~~v~~-~~Iiit~Ga~~al~~l~~~l~~pGd~----Vlv~~P~Y~~ 147 (468)
T PLN02450 78 ELALFQDYHGL-----PAFKNALAEFMSEIRGNKVTFDP-NKLVLTAGATSANETLMFCLAEPGDA----FLLPTPYYPG 147 (468)
T ss_pred hhhcCCCCCCh-----HHHHHHHHHHHHHhhCCCCCcCh-HHeEEccChHHHHHHHHHHhCCCCCE----EEECCCCCCc
Confidence 45679999998 9999999999874 343 3455 58999999999999999999999998 9999999999
Q ss_pred cHHHHH-HhCCeeeeecCC-ccccccC---------------CCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEE
Q 018172 100 YPAETD-YLRSGLYKWDGD-ANTFDKN---------------NGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKL 158 (360)
Q Consensus 100 ~~~~~~-~~g~~~~~~~~~-~~~~~~~---------------~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~l 158 (360)
+...+. ..|++++.++.+ .+++..+ .++++|+++|||||||.++++ .+.++|+++++++
T Consensus 148 ~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~i 227 (468)
T PLN02450 148 FDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHL 227 (468)
T ss_pred hHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEE
Confidence 988888 589999999875 3454331 278999999999999999993 4556788899999
Q ss_pred EEeecccCCC-----CCcCC-----------CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCC
Q 018172 159 IHDLAYYWPQ-----YTPIT-----------GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVS 222 (360)
Q Consensus 159 i~D~ay~~~~-----~~~~~-----------~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (360)
|+||+|.+.. +.+.. +..+++++++||||.|+++|+|+||++++++.+.+.+.+.... .+.+
T Consensus 228 I~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~--~~~s 305 (468)
T PLN02450 228 ISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSF--GLVS 305 (468)
T ss_pred EEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhhc--CCCC
Confidence 9999998421 21211 1357899999999999999999999999546667777665432 3578
Q ss_pred hHHHHHHHHHhcccCCCch-hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch--
Q 018172 223 KESQLRAAKILGIVSDDYP-NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-- 299 (360)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 299 (360)
.++|.++..+|+. +.+. .++++.+++++++++.+.+.|+++ ++.+..+.+++ |+|++++..
T Consensus 306 ~~~Q~a~~~~L~~--~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~~~~~~~g~-------------flwi~l~~~~~ 369 (468)
T PLN02450 306 SQTQYLLSALLSD--KKFTKNYLEENQKRLKQRQKKLVSGLEAA-GIKCLKSNAGL-------------FCWVDMRHLLK 369 (468)
T ss_pred HHHHHHHHHHhCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCceE-------------EEEEEchHhcC
Confidence 8999999998872 2222 478899999999999999999998 45665666665 778877521
Q ss_pred --------HHHHHHHHhhCeeeeCCCCCCC-CCCeEEEEecC-ChHHHHHHHHHHHHHHhchh
Q 018172 300 --------EDCEKLLRAERIMARGGRRFGA-DAKYARVSMLS-REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 300 --------~~~~~~l~~~gI~~~pg~~f~~-~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~~ 352 (360)
+.+.+++.++||.+.||+.|+. .++|+|++++. +++++++++++|++++.+.+
T Consensus 370 ~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 370 SNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred cCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHhcc
Confidence 2345566778999999999975 47899999986 89999999999999997654
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=325.25 Aligned_cols=295 Identities=19% Similarity=0.252 Sum_probs=241.8
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|+++.|. ++||++++++++.+ +..++++++|++|+|+++++..++..++++||+ |++++|+|+.+..
T Consensus 66 ~~~Y~~~~G~-----~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~----Vlv~~P~y~~~~~ 136 (394)
T PRK05942 66 NHGYPPFEGT-----ASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDV----VLVPSPAYPAHFR 136 (394)
T ss_pred CccCCCCCCC-----HHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCE----EEEcCCCCcchHH
Confidence 3569999998 99999999998754 766777656999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC
Q 018172 103 ETDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
.+...|++++.++.+.+ ++.. +++++++++++||||||.++++ .+.++|+++++++|+||+|.+..
T Consensus 137 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~ 216 (394)
T PRK05942 137 GPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELA 216 (394)
T ss_pred HHHHcCCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhc
Confidence 99999999999987643 3221 3589999999999999999983 45567888999999999998432
Q ss_pred C-----CcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCc
Q 018172 169 Y-----TPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 169 ~-----~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
+ .++. ...+++++++||||.||++|+|+||+++ ++++++.+...+.....+.+.+.|.++..+++..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~-~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---- 291 (394)
T PRK05942 217 FDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVG-NRHIIQGLRTLKTNLDYGIFSALQKAAETALQLP---- 291 (394)
T ss_pred cCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc----
Confidence 1 2222 2345678999999999999999999998 8999999998877667788999999999988632
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---h-HHHHHHHHhhCeeeeCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---D-EDCEKLLRAERIMARGG 316 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~gI~~~pg 316 (360)
+.++++.++.++++++++.+.|+.+ ++.+..+.+++ |+|++++. . +.+.++|.++||.++||
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~-------------f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g 357 (394)
T PRK05942 292 DSYLQQVQERYRTRRDFLIQGLGEL-GWNIPPTKATM-------------YLWVPCPVGMGSTDFALNVLQKTGVVVTPG 357 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeee-------------EEEEECCCCCCHHHHHHHHHHHCCEEEeCC
Confidence 3889999999999999999999887 45555555554 78888864 2 45566788899999999
Q ss_pred CCCCC-CCCeEEEEecCChHHHHHHHHHHHH
Q 018172 317 RRFGA-DAKYARVSMLSREEIFNIFLERLSA 346 (360)
Q Consensus 317 ~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~ 346 (360)
..|+. .++++|++++.+.+.+.+++++|.+
T Consensus 358 ~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~ 388 (394)
T PRK05942 358 NAFGEGGEGYVRISLIADCDRLGEALDRLKQ 388 (394)
T ss_pred hhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 99974 4689999997677777777777755
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=331.99 Aligned_cols=305 Identities=17% Similarity=0.194 Sum_probs=244.4
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhc-CCCCCCCceEEEeCCCCCCcH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALS-SPGGPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~-~~gd~~~~~vl~~~p~~~~~~ 101 (360)
...|++..|. ++||++++++++. +|.++++ ++|++|+|+++++++++..++ ++||. |+++.|+|+.+.
T Consensus 108 ~~~Y~~~~G~-----~~LR~aia~~~~~~~g~~~~~-~~I~it~Ga~~al~~~~~~l~~~~gD~----Vlv~~P~y~~y~ 177 (481)
T PTZ00377 108 TGAYTDSAGY-----PFVRKAVAAFIERRDGVPKDP-SDIFLTDGASSGIKLLLQLLIGDPSDG----VMIPIPQYPLYS 177 (481)
T ss_pred ccCcCcccCC-----HHHHHHHHHHHHHhcCCCCCh-hhEEEcCCHHHHHHHHHHHhccCCCCE----EEECCCCchhHH
Confidence 3569999998 9999999999874 5777766 589999999999999999998 79998 999999999999
Q ss_pred HHHHHhCCeeeeecCCc-ccccc---------CC------CeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEe
Q 018172 102 AETDYLRSGLYKWDGDA-NTFDK---------NN------GAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHD 161 (360)
Q Consensus 102 ~~~~~~g~~~~~~~~~~-~~~~~---------~~------~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D 161 (360)
.+++..|.+++.++++. +++.. ++ ++|++++++||||||.+++ +.+.++|+++++++|+|
T Consensus 178 ~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~D 257 (481)
T PTZ00377 178 AAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMAD 257 (481)
T ss_pred HHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 99999999999998774 33322 11 7899999999999999999 35567788899999999
Q ss_pred ecccCCCC------CcCC----CC------CCccEEEeccccc-cCCCCceEEEEee--cCHHHHHHHHHHHhhccccCC
Q 018172 162 LAYYWPQY------TPIT----GA------ADHDIMLFTLSKC-TGHAGSRIGWALV--KDTEVARKMTRFIELGSIGVS 222 (360)
Q Consensus 162 ~ay~~~~~------~~~~----~~------~~~~i~~~S~sK~-~~~~G~r~G~~~~--~~~~~~~~l~~~~~~~~~~~~ 222 (360)
|+|.+..+ .++. +. ..++++++||||. +++||||+||+++ .++++++.+.+.+. ...+.+
T Consensus 258 e~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~-~~~~~~ 336 (481)
T PTZ00377 258 EVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLAS-INLCSN 336 (481)
T ss_pred hhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhh-eecCCC
Confidence 99985222 1211 11 1268999999997 6999999999986 37899999988764 345789
Q ss_pred hHHHHHHHHHhcccC---CC---chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC
Q 018172 223 KESQLRAAKILGIVS---DD---YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES 296 (360)
Q Consensus 223 ~~~~~~~~~~l~~~~---~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (360)
.++|.++..+++... .. +..++.+.++.++++++.+.+.|++++++.+..|.|++ |+|+++
T Consensus 337 ~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~-------------fl~~~~ 403 (481)
T PTZ00377 337 VVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAM-------------YAFPRI 403 (481)
T ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeE-------------EEEeec
Confidence 999999999886321 11 22345555567899999999999998778888888887 555433
Q ss_pred C---------------ch-HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 297 K---------------ED-EDCEKLLRAERIMARGGRRFGA--DAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 297 ~---------------~~-~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
+ +. ..+..+|+++||.++||+.|+. ..+++|+|++.++|++++++++|.+++.+..
T Consensus 404 ~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~~~l~rl~~~~~~~~ 477 (481)
T PTZ00377 404 ELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFHESFM 477 (481)
T ss_pred cCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 1 12 3467888899999999999974 3569999998788899999999999998654
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=321.18 Aligned_cols=300 Identities=19% Similarity=0.207 Sum_probs=248.7
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. ++||++++++++.. |..++++.+|++|+|+++++.+++..++++||+ |+++.|+|..+...
T Consensus 59 ~~Y~~~~g~-----~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~----Vl~~~p~y~~~~~~ 129 (387)
T PRK07683 59 TSYTHNAGL-----LELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTE----VILPAPIYPGYEPI 129 (387)
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCE----EEEcCCCccchHHH
Confidence 468888887 99999999998744 777776548999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcccccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC--
Q 018172 104 TDYLRSGLYKWDGDANTFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ-- 168 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~-- 168 (360)
++..|++++.++.+.+++.. +++++++++++||||||.+++ +.+.++|+++++++|+|++|.+..
T Consensus 130 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~ 209 (387)
T PRK07683 130 IRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYE 209 (387)
T ss_pred HHHcCCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeC
Confidence 99999999999887665533 257899999999999999998 345577888999999999998532
Q ss_pred --CCcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 169 --YTPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 169 --~~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
..++. +..+++++++||||+||+||+|+||+++ ++++++.+.........+++.+.|.++.++++. +. .+
T Consensus 210 ~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~--~~ 284 (387)
T PRK07683 210 QPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFA-PSYLAKHILKVHQYNVTCASSISQYAALEALTA--GK--DD 284 (387)
T ss_pred CCcCChhhccCCcCCeEEEeeccccccCccceeEEEEc-CHHHHHHHHHHHHhccCCCChHHHHHHHHHHhC--Ch--HH
Confidence 12222 2456899999999999999999999998 899999998776655567788999999888863 32 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----h-HHHHHHHHhhCeeeeCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----D-EDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~gI~~~pg~~ 318 (360)
+++.++.++++++.+.+.|++. ++.+..+.+++ |+|+.++. . +.+..+++++||.++||+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~ 350 (387)
T PRK07683 285 AKMMRHQYKKRRDYVYNRLISM-GLDVEKPTGAF-------------YLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSA 350 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCcccCCCeeE-------------EEEEecccCCCCHHHHHHHHHHhCCEEEcCchh
Confidence 8899999999999999999987 45555566555 67776653 2 4555678889999999999
Q ss_pred CCC-CCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 319 FGA-DAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 319 f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
|+. .++++||+++.+++++++++++|.++++++.
T Consensus 351 f~~~~~~~~Ri~~~~~~~~~~~al~~l~~~l~~~~ 385 (387)
T PRK07683 351 FSEYGEGYVRLSYAYSIETLKEGLDRLEAFLQQKA 385 (387)
T ss_pred hCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhhc
Confidence 965 4689999998899999999999999987653
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=323.46 Aligned_cols=302 Identities=16% Similarity=0.216 Sum_probs=239.8
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
.++|++..|. ++||++++++++. +|..+++ ++|++|+|+++++.+++..++++||. |+++.|+|+.+..
T Consensus 67 ~~~Y~~~~G~-----~~lr~aia~~~~~~~g~~~~~-~~I~it~G~~~al~~~~~~l~~~gd~----v~v~~P~y~~~~~ 136 (409)
T PLN00143 67 FNSYAPTGGI-----LPARRAIADYLSNDLPYQLSP-DDVYLTLGCKHAAEIIIKVLARPEAN----ILLPRPGFPDVET 136 (409)
T ss_pred CCCCCCCCCC-----HHHHHHHHHHHHhhcCCCCCH-hhEEEecChHHHHHHHHHHHcCCCCE----EEEcCCCCcCHHH
Confidence 3569888888 9999999999764 4666766 48999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCC-cccccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC
Q 018172 103 ETDYLRSGLYKWDGD-ANTFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~-~~~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
.++..|.+++.++++ .+++.. .+++++++++|||||||.++++ .+.++|+++++++|+||+|.+..
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~ 216 (409)
T PLN00143 137 YAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIV 216 (409)
T ss_pred HHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccc
Confidence 999999999998874 233322 3578999999999999999993 45567888999999999998522
Q ss_pred C-----CcCC--CCCCccEEEeccccccCCCCceEEEEeecC-HHH------HHHHHHHHhhccccCChHHHHHHHHHhc
Q 018172 169 Y-----TPIT--GAADHDIMLFTLSKCTGHAGSRIGWALVKD-TEV------ARKMTRFIELGSIGVSKESQLRAAKILG 234 (360)
Q Consensus 169 ~-----~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~-~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 234 (360)
+ .++. ...+++++++||||.|++||+|+||+++++ ..+ ++.+.+.... ....+.+.|.++.++++
T Consensus 217 ~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~ 295 (409)
T PLN00143 217 FGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNP-APFPPTFIQAAIPEILE 295 (409)
T ss_pred cCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhc-cCCCCchHHHHHHHHHh
Confidence 1 2221 334589999999999999999999999843 333 3344444332 22357899999998886
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccc-CCCCCcccccccccCCCCCCcccccCCc--------h-HHHHH
Q 018172 235 IVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGL-PEYPLEYCNFTGKFTNSHPGFAWLESKE--------D-EDCEK 304 (360)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~ 304 (360)
. ..+.++++.++.++++++.+.+.|+++++... ..|.|++ |+|++++. . +++.+
T Consensus 296 ~---~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~-------------f~w~~l~~~~~~~~~~~~~~~~~ 359 (409)
T PLN00143 296 K---TTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAF-------------FALVKLNLLLLEDIEDDMEFCLK 359 (409)
T ss_pred c---ChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeE-------------EEEEecchhhcCCCCCHHHHHHH
Confidence 2 12378999999999999999999988754432 2455555 88888852 3 55667
Q ss_pred HHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhchhc
Q 018172 305 LLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 305 ~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~~ 353 (360)
++.++||.++||..|+. ++++||+++.+++++++++++|.+++++..+
T Consensus 360 ll~~~gV~v~pg~~f~~-~~~iRi~~~~~~~~l~~al~rl~~~l~~~~~ 407 (409)
T PLN00143 360 LAKEESLIILPGVTVGL-KNWLRITFAVEQSSLEDGLGRLKSFCGRHAK 407 (409)
T ss_pred HHHhCCEEEeCccccCC-CCeEEEEEcCCHHHHHHHHHHHHHHHHHhcc
Confidence 88899999999999975 7899999988999999999999999976543
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=323.06 Aligned_cols=297 Identities=20% Similarity=0.270 Sum_probs=240.7
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCC--CCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNA--VSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY 100 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~--~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~ 100 (360)
...|+++.|. ++||++++++++. ++.+ ++++++|++|+|+++++.+++..++++||+ +.|++++|+|+.+
T Consensus 57 ~~~Y~~~~G~-----~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~--~~vlv~~P~y~~~ 129 (393)
T TIGR03538 57 LSTYPTTKGL-----PELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQA--PLVVMPNPFYQIY 129 (393)
T ss_pred cCCCCCCCCC-----HHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCc--ceEEecCCCCcch
Confidence 4569999998 9999999999754 3655 455458999999999999999999999974 2389999999999
Q ss_pred HHHHHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccC
Q 018172 101 PAETDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYW 166 (360)
Q Consensus 101 ~~~~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~ 166 (360)
..+++..|++++.++++.+ ++.. ..++++|++++||||||.+++ +.+.++|++++++||+||+|.+
T Consensus 130 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~ 209 (393)
T TIGR03538 130 EGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSE 209 (393)
T ss_pred HHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhh
Confidence 9999999999999988643 3432 247899999999999999999 3455677889999999999985
Q ss_pred CCCC------cC------C--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHH
Q 018172 167 PQYT------PI------T--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKI 232 (360)
Q Consensus 167 ~~~~------~~------~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 232 (360)
..+. +. . ...+++++++||||.|+++|+|+||+++ ++++++.+.+.....+.+.+.+.|.++.+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~ 288 (393)
T TIGR03538 210 LYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAG-DAEILKAFLRYRTYHGCAMPIPTQLASIAA 288 (393)
T ss_pred cccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEec-CHHHHHHHHHHHHhhccCcCHHHHHHHHHH
Confidence 3211 11 0 1356899999999999999999999998 899999998887766678889999998877
Q ss_pred hcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-ch-HHHHHHHHhhC
Q 018172 233 LGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-ED-EDCEKLLRAER 310 (360)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~~~g 310 (360)
+. .. .++++.++.++++++.+.+.|+++ +.+..|.+++ |+|++++ +. +.+..+++++|
T Consensus 289 l~---~~--~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~gg~-------------f~~~~~~~~~~~~~~~l~~~~g 348 (393)
T TIGR03538 289 WN---DE--QHVRENRALYREKFAAVLEILGQV--LDLELPDAGF-------------YLWPKVPGDDEAFARALYEEEN 348 (393)
T ss_pred hc---Ch--HHHHHHHHHHHHHHHHHHHHHHhh--CcccCCCeeE-------------EEEEECCCCHHHHHHHHHHHCC
Confidence 75 22 789999999999999999999876 3334455554 8899987 44 44445556789
Q ss_pred eeeeCCCCCCC-------CCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 311 IMARGGRRFGA-------DAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 311 I~~~pg~~f~~-------~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
|.+.||+.|+. ..+++|||++.+++++++++++|++++
T Consensus 349 V~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~l~~~l~~l~~~~ 393 (393)
T TIGR03538 349 VTVLPGRFLAREAEGVNPGEGRVRIALVAPLEECVEAAERIRSFI 393 (393)
T ss_pred EEEeCCccccccccCCCCCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence 99999998852 257999999889999999999998763
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=323.51 Aligned_cols=301 Identities=19% Similarity=0.187 Sum_probs=242.9
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhc-------CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCC
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVV-------DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY 96 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~-------~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~ 96 (360)
...|+++.|. ++||++++++++.+ +..+++ ++|++|+|+++++.+++..++++||+ |+++.|+
T Consensus 68 ~~~Y~~~~G~-----~~Lr~aia~~~~~~~~~~~~~~~~~~~-~~i~it~G~~~al~~~~~~~~~~gd~----vlv~~P~ 137 (412)
T PTZ00433 68 CNGYPPTVGS-----PEAREAVATYWRNSFVHKESLKSTIKK-DNVVLCSGVSHAILMALTALCDEGDN----ILVPAPG 137 (412)
T ss_pred CCCCCCCCCc-----HHHHHHHHHHHHhhccccccccCCCCh-hhEEEeCChHHHHHHHHHHhcCCCCE----EEEccCC
Confidence 4579998888 99999999998753 455665 58999999999999999999999998 9999999
Q ss_pred CCCcHHHHHHhCCeeeeecCCcc---cccc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEee
Q 018172 97 YSQYPAETDYLRSGLYKWDGDAN---TFDK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDL 162 (360)
Q Consensus 97 ~~~~~~~~~~~g~~~~~~~~~~~---~~~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ 162 (360)
|..+...++..|++++.++++.+ +++. .+++++|++++||||||.+++ +.+.++|+++|+++|+||
T Consensus 138 y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De 217 (412)
T PTZ00433 138 FPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDE 217 (412)
T ss_pred cccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEec
Confidence 99999999999999999987642 3322 257899999999999999998 245667888999999999
Q ss_pred cccCCCC-----CcCCC--CCCccEEEeccccccCCCCceEEEEeecC-----HHHHHHHHHHHhhccccCChHHHHHHH
Q 018172 163 AYYWPQY-----TPITG--AADHDIMLFTLSKCTGHAGSRIGWALVKD-----TEVARKMTRFIELGSIGVSKESQLRAA 230 (360)
Q Consensus 163 ay~~~~~-----~~~~~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~ 230 (360)
+|.+..+ .++.. ...++++++||||+|++||+|+||+++.+ +++++.+.+... ...+.+.+.|.++.
T Consensus 218 ~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~ 296 (412)
T PTZ00433 218 IYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGM-LVCGPCSVVQAALG 296 (412)
T ss_pred cccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhh-ccCCCChHHHHHHH
Confidence 9985322 22222 22357899999999999999999999622 467777776553 34678999999999
Q ss_pred HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--------h-HH
Q 018172 231 KILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--------D-ED 301 (360)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~ 301 (360)
+++.. ..+.++++.++.++++++.+.+.|+++.++.+..|.+++ |+|++++. . +.
T Consensus 297 ~~l~~---~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~-------------f~~~~l~~~~~~~~~~~~~~ 360 (412)
T PTZ00433 297 EALLN---TPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSM-------------FLMSRLDLEKFRDIKSDVEF 360 (412)
T ss_pred HHHhc---CcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeE-------------EEEEEechhhcCCCCCHHHH
Confidence 88863 235899999999999999999999987555555565555 78877652 2 44
Q ss_pred HHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 302 CEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 302 ~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
+..+++++||.++||..|+. ++++|++++..+|++++++++|.+++++.+
T Consensus 361 ~~~ll~~~gV~v~pg~~f~~-~~~iRis~~~~~e~l~~al~~l~~~~~~~~ 410 (412)
T PTZ00433 361 YEKLLEEENVQVLPGEIFHM-PGFTRLTISRPVEVLREAVERIKAFCERHK 410 (412)
T ss_pred HHHHHHhcCEEEeCccccCC-CCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 45555578999999999975 789999998889999999999999997655
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=316.37 Aligned_cols=294 Identities=17% Similarity=0.194 Sum_probs=243.1
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCC---CCCCceEEEeCCCCCC
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPG---GPEPISVVSAAPYYSQ 99 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~g---d~~~~~vl~~~p~~~~ 99 (360)
+..|+++.|. ++||++++++++.. |++++++++|++|+|++++++.++..++++| |+ |+++.|+|+.
T Consensus 29 ~~~Y~~~~G~-----~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~----Vl~~~p~y~~ 99 (350)
T TIGR03537 29 VSQYPSALGT-----KALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRR----VIFGTPGYPV 99 (350)
T ss_pred cCCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCce----EEEcCCCCcc
Confidence 4569998988 99999999998754 8777775589999999999999999999887 46 9999999999
Q ss_pred cHHHHHHhCCeeeeecCCc-ccccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeeccc
Q 018172 100 YPAETDYLRSGLYKWDGDA-NTFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYY 165 (360)
Q Consensus 100 ~~~~~~~~g~~~~~~~~~~-~~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~ 165 (360)
+...++..|++++.++.+. +++.. .++++++++++||||||.+++. .+.++|+++++++|+||+|.
T Consensus 100 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~ 179 (350)
T TIGR03537 100 YERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYT 179 (350)
T ss_pred hHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEecccc
Confidence 9999999999999998863 45422 3578999999999999999983 45567888999999999997
Q ss_pred CCCC----CcCC-CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCc
Q 018172 166 WPQY----TPIT-GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 166 ~~~~----~~~~-~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
+..+ .+.. ...++++++.||||.+|++|+|+||+++ ++++.+.+.......+.+.+...|.++.+.+. ..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~- 254 (350)
T TIGR03537 180 EIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAG-DEKLISFLRKLRANFGVASPDFVQAAAKAAWS---DD- 254 (350)
T ss_pred ccccCCCCCchhhcCcCCEEEEeecccccCCccccceeeec-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHhC---Cc-
Confidence 4211 1111 2356899999999999999999999998 89999999988776667777778888877665 22
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGR 317 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~ 317 (360)
.++++.++.++++++.+.+.|+.+ ++.+..|.+++ |+|+++++. ..+.+.|.++||.++||.
T Consensus 255 -~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~~~~g~~-------------~~~~~~~~~~~~~~l~~~L~~~gv~v~~g~ 319 (350)
T TIGR03537 255 -NHVLERRKIFKRKRDLFIEFFNKV-GLEYLYPDATF-------------YLWVKVPSGIDAKDYALRLLENGIVVAPGE 319 (350)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeEE-------------EEEEECCCCCCHHHHHHHHHHCCEEEcCch
Confidence 788999999999999999999988 45555555554 788888752 667777778999999999
Q ss_pred CCCC-CCCeEEEEecCChHHHHHHHHHHHH
Q 018172 318 RFGA-DAKYARVSMLSREEIFNIFLERLSA 346 (360)
Q Consensus 318 ~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~ 346 (360)
.|+. .++++|++++.+++++++++++|++
T Consensus 320 ~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 320 NFGSGEEGYVRVALVPTLEECEEALRLWER 349 (350)
T ss_pred hhCCCCCCEEEEEecCCHHHHHHHHHHHhc
Confidence 9975 3689999997788999999998875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=320.63 Aligned_cols=298 Identities=19% Similarity=0.240 Sum_probs=245.0
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|+++.|. ++||++++++++. +|..++++++|++|+|+++++..++..++++||+ |+++.|+|+.+..+
T Consensus 57 ~~Y~~~~G~-----~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~----Vlv~~p~y~~~~~~ 127 (387)
T PRK08912 57 NQYPPMMGL-----PELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDE----VVLFQPLYDAYLPL 127 (387)
T ss_pred CCCCCCCCc-----HHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCE----EEEeCCCchhhHHH
Confidence 569999988 9999999998764 4777776558999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcccc--cc-------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC--
Q 018172 104 TDYLRSGLYKWDGDANTF--DK-------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ-- 168 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~--~~-------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~-- 168 (360)
++..|++++.++.+.+++ +. +++++++++++||||||.+++. .+.++|+++++++|+||+|.+..
T Consensus 128 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~ 207 (387)
T PRK08912 128 IRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFD 207 (387)
T ss_pred HHHcCCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccC
Confidence 999999999888764322 21 3578999999999999999982 45677888999999999997421
Q ss_pred ---CCcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 169 ---YTPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 169 ---~~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
..++. +..+++++++||||.||++|+|+||+++ ++++++.+........++.++..|.++.+++. .. ..
T Consensus 208 ~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~--~~--~~ 282 (387)
T PRK08912 208 GRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCA-APPLLRVLAKAHQFLTFTTPPNLQAAVAYGLG--KP--DD 282 (387)
T ss_pred CCCCcChhhCCCccCceEEEeechhhccCcCceeEEEec-CHHHHHHHHHHHhhccccCChHHHHHHHHHHh--CC--HH
Confidence 12222 2356899999999999999999999999 89999999888776667888888988888775 22 37
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc------hH-HHHHHHHhhCeeeeC
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE------DE-DCEKLLRAERIMARG 315 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~l~~~gI~~~p 315 (360)
++++.++.++++++.+.+.|+.+ ++.+..+.+++ |+|++++. .. .+..+++++||.+.|
T Consensus 283 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~g~~-------------~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~p 348 (387)
T PRK08912 283 YFEGMRADLARSRDRLAAGLRRI-GFPVLPSQGTY-------------FLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIP 348 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcce-------------EEEecccccCCCCCHHHHHHHHHhcCCEEEec
Confidence 88999999999999999999998 45655555554 77887753 23 444556778999999
Q ss_pred CCCCCC---CCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 316 GRRFGA---DAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 316 g~~f~~---~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
|..|+. ..+++|++++.+++.+++++++|.+++.+
T Consensus 349 g~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 349 VSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAARRR 386 (387)
T ss_pred chhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 998853 35799999988999999999999998875
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=323.41 Aligned_cols=296 Identities=20% Similarity=0.221 Sum_probs=233.3
Q ss_pred cccccCCCCccccccHHHHHHHHHHH-hhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLH-HVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~-~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|+++.|. ++||+++++++ ..+|..++++ +|++|+|+++++.++. .++++||+ |++++|+|+.+..
T Consensus 69 ~~~Y~~~~G~-----~~LR~aia~~~~~~~g~~~~~~-~I~it~Ga~~al~~l~-~~~~~gd~----V~v~~P~Y~~~~~ 137 (409)
T PRK07590 69 FRGYGPEQGY-----DFLREKIAENDYQARGCDISAD-EIFISDGAKCDTGNIL-DIFGPDNT----IAVTDPVYPVYVD 137 (409)
T ss_pred ccCCCCCCCC-----HHHHHHHHHHHHHhcCCcCChh-hEEECCCHHHHHHHHH-HhcCCCCE----EEEeCCCCcchHH
Confidence 3468888888 99999999985 4667777775 8999999999999865 56689998 9999999999999
Q ss_pred HHHHhCCe-----------eeeecCCcc-cccc---CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeec
Q 018172 103 ETDYLRSG-----------LYKWDGDAN-TFDK---NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 103 ~~~~~g~~-----------~~~~~~~~~-~~~~---~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~a 163 (360)
+++..|.+ ++.++++.+ ++.. .+++|+|++++||||||.+++. .+.++|++++++||+||+
T Consensus 138 ~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~ 217 (409)
T PRK07590 138 TNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAA 217 (409)
T ss_pred HHHHcCCcccccccccccceeEeecccccCCcccCcccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEcc
Confidence 99999987 888888743 4544 2578999999999999999993 455678889999999999
Q ss_pred ccCCC-----CCcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHH------------HHHHhhccccCCh
Q 018172 164 YYWPQ-----YTPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKM------------TRFIELGSIGVSK 223 (360)
Q Consensus 164 y~~~~-----~~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l------------~~~~~~~~~~~~~ 223 (360)
|.+.. ..++. ...+++++++||||+||+||+|+||+++ ++++++.+ .........+.+.
T Consensus 218 Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~-~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 296 (409)
T PRK07590 218 YEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVV-PKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSY 296 (409)
T ss_pred chhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEc-CHHHhhhccccchhhhHHHHHHHHhhcccCcCH
Confidence 98421 12222 2235789999999999999999999999 78888732 1212212236788
Q ss_pred HHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch----
Q 018172 224 ESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---- 299 (360)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 299 (360)
+.|.++.+++.. ..+.++++.++.++++++.+.+.|+.+ ++.+..+.+++ |+|+++++.
T Consensus 297 ~~q~a~~~~l~~---~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~g~~-------------f~wi~~~~~~~~~ 359 (409)
T PRK07590 297 IVQRAAEAVYSP---EGKAQIKELIDYYMENAKIIREGLESA-GFEVYGGVNAP-------------YIWVKTPDGMSSW 359 (409)
T ss_pred HHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCcce-------------EEEEECCCCCCHH
Confidence 999999887762 123789999999999999999999998 35544444444 889998752
Q ss_pred HHHHHHHHhhCeeeeCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 300 EDCEKLLRAERIMARGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 300 ~~~~~~l~~~gI~~~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
+.+..+++++||.++||..|+. ..+++||++..+++++++++++|.+++
T Consensus 360 ~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~ 409 (409)
T PRK07590 360 DFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSRENVLEAMERIKKAL 409 (409)
T ss_pred HHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccCCHHHHHHHHHHHHhhC
Confidence 3445556678999999999975 357999998678999999999998753
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=320.46 Aligned_cols=301 Identities=18% Similarity=0.251 Sum_probs=246.1
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|++..|. ++||++++++++. +|..+++ ++|++|+|+++++.+++..++++||+ |++++|+|+.+..
T Consensus 66 ~~~Y~~~~G~-----~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~----Vlv~~p~y~~~~~ 135 (409)
T PLN02656 66 FNGYAPTVGL-----PQARRAIAEYLSRDLPYKLSL-DDVFITSGCTQAIDVALSMLARPGAN----ILLPRPGFPIYEL 135 (409)
T ss_pred CCCCCCCCCC-----HHHHHHHHHHHHHhcCCCCCc-ccEEEeCChHHHHHHHHHHHhCCCCe----EEEeCCCCCcHHH
Confidence 3568888888 9999999999864 4666666 48999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCc-ccccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC
Q 018172 103 ETDYLRSGLYKWDGDA-NTFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~-~~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
.++..|++++.++++. +++.. +++++++++++||||||.+++ +.+.++|+++++++|+|++|.+..
T Consensus 136 ~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~ 215 (409)
T PLN02656 136 CAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLA 215 (409)
T ss_pred HHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcc
Confidence 9999999999988753 23222 357899999999999999998 345677888999999999998532
Q ss_pred C-----CcCC--CCCCccEEEeccccccCCCCceEEEEeec-------CHHHHHHHHHHHhhccccCChHHHHHHHHHhc
Q 018172 169 Y-----TPIT--GAADHDIMLFTLSKCTGHAGSRIGWALVK-------DTEVARKMTRFIELGSIGVSKESQLRAAKILG 234 (360)
Q Consensus 169 ~-----~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 234 (360)
+ .++. +...++++++||||.|++||+|+||++++ ++++++.+.+.... ..+.+.+.|.++..+++
T Consensus 216 ~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~ 294 (409)
T PLN02656 216 FGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDI-LGGPATFIQAAVPTILE 294 (409)
T ss_pred cCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhh-hcCCCHHHHHHHHHHHh
Confidence 2 2221 34568999999999999999999999984 25788888876653 34678999999999887
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccc-CCCCCcccccccccCCCCCCcccccCC--------ch-HHHHH
Q 018172 235 IVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGL-PEYPLEYCNFTGKFTNSHPGFAWLESK--------ED-EDCEK 304 (360)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~ 304 (360)
. ..+.++++.++.++++++.+.+.|+.+++... ..|.|++ |+|++++ +. +++.+
T Consensus 295 ~---~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~-------------~~w~~l~~~~~~~~~~~~~~~~~ 358 (409)
T PLN02656 295 Q---TDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSM-------------AVMVKLNLSLLEDISDDIDFCFK 358 (409)
T ss_pred c---CcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEE-------------EEEEecchhhcCCCCCHHHHHHH
Confidence 3 12478999999999999999999998854432 3566665 6777764 23 45678
Q ss_pred HHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 305 LLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 305 ~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
++.++||.++||+.|+. ++++|++++.++|++++++++|++++.+.+
T Consensus 359 ~l~~~gV~v~pg~~fg~-~~~iRi~~~~~~e~l~eal~rl~~~~~~~~ 405 (409)
T PLN02656 359 LAREESVIILPGTAVGL-KNWLRITFAADPSSLEEALGRIKSFYLRHS 405 (409)
T ss_pred HHHhCCEEEecchhcCC-CCeEEEEeCCCHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999985 789999998899999999999999987654
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=322.94 Aligned_cols=300 Identities=17% Similarity=0.182 Sum_probs=236.0
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|++..|. ++||++++++++.+ |..++++ +|++|+|+++++..++. ++++||. |++++|+|+.+..
T Consensus 66 ~~~Y~~~~G~-----~~LReaia~~~~~~~g~~~~~~-~I~it~G~~~al~~~~~-l~~~Gd~----Vlv~~P~Y~~~~~ 134 (433)
T PRK06855 66 SYGYCPTKGV-----LETREFLAELNNKRGGAQITPD-DIIFFNGLGDAIAKIYG-LLRREAR----VIGPSPAYSTHSS 134 (433)
T ss_pred CCCCCCCCCC-----HHHHHHHHHHHHhccCCCCCHh-HEEEcCcHHHHHHHHHH-hcCCCCe----EEEeCCCCchHHH
Confidence 3469999998 99999999998754 7777764 89999999999999985 7899998 9999999999775
Q ss_pred HH-HHhCCeeeeecCCc-ccccc-----------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeeccc
Q 018172 103 ET-DYLRSGLYKWDGDA-NTFDK-----------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYY 165 (360)
Q Consensus 103 ~~-~~~g~~~~~~~~~~-~~~~~-----------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~ 165 (360)
.. ...|++++.++++. +++.. .++++++++++||||||.+++. .+.++|++++++||+||+|.
T Consensus 135 ~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~ 214 (433)
T PRK06855 135 AEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYN 214 (433)
T ss_pred HHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 43 34588888887763 33321 1467899999999999999993 45577888999999999998
Q ss_pred CCC-----CCcCCC--CCCccEEEeccccccCCCCceEEEEeec----CH---HHHHHHHHHHhhccccCChHHHHHHHH
Q 018172 166 WPQ-----YTPITG--AADHDIMLFTLSKCTGHAGSRIGWALVK----DT---EVARKMTRFIELGSIGVSKESQLRAAK 231 (360)
Q Consensus 166 ~~~-----~~~~~~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~----~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (360)
+.. .+++.. ...++++++||||.|++||+|+||++++ ++ .+++.+..... ...+.+.+.|.++.+
T Consensus 215 ~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~ 293 (433)
T PRK06855 215 NIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPR 293 (433)
T ss_pred ccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHH
Confidence 532 222221 2236799999999999999999999973 22 23344433332 245678899999999
Q ss_pred HhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-------------
Q 018172 232 ILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE------------- 298 (360)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 298 (360)
+++ .+.++.++++.++.+++|++.+.+.|++++++.+..|.|++ |+|+++++
T Consensus 294 ~l~--~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~-------------~~w~~l~~~~~~~~~~~~~~~ 358 (433)
T PRK06855 294 IMS--HPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAF-------------YMTVVFEDGVLNNKQSLPIEN 358 (433)
T ss_pred hhc--CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccCCCeeE-------------EEeeccccccccccccCCcch
Confidence 887 34456899999999999999999999988666667777777 66666652
Q ss_pred -----------------h-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHHhc
Q 018172 299 -----------------D-EDCEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 299 -----------------~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~ 350 (360)
. +++..++.++||.+.||..|+....++|+|++. +.|++++++++|.+++.+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 359 PEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLERDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred hhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECCCcHHHHHHHHHHHHHHHHH
Confidence 2 456678889999999999997645579999987 999999999999999864
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=327.17 Aligned_cols=302 Identities=17% Similarity=0.297 Sum_probs=238.5
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhh-cC--CCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHV-VD--NAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ 99 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~--~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~ 99 (360)
....|++..|. ++||+++++|++. +| .+++++ +|++|+|+++++..++.+|+++||. |+++.|+|+.
T Consensus 86 ~~~~y~~~~G~-----~~LR~aiA~~l~~~~g~~v~v~pe-~Ivit~Ga~~al~~l~~~l~~pGD~----Vlv~~P~Y~~ 155 (496)
T PLN02376 86 DIANFQDYHGL-----KKFRQAIAHFMGKARGGKVTFDPE-RVVMSGGATGANETIMFCLADPGDV----FLIPSPYYAA 155 (496)
T ss_pred hhhccCCCCCc-----HHHHHHHHHHHHHHhCCCCcCChh-hEEEccchHHHHHHHHHHhCCCCCE----EEECCCCccc
Confidence 44568888998 9999999999874 35 456664 8999999999999999999999998 9999999999
Q ss_pred cHHHHH-HhCCeeeeecCCc-c--cccc-------------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEE
Q 018172 100 YPAETD-YLRSGLYKWDGDA-N--TFDK-------------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKL 158 (360)
Q Consensus 100 ~~~~~~-~~g~~~~~~~~~~-~--~~~~-------------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~l 158 (360)
+...+. ..|++++.++++. + ++.. ..++|+|+++|||||||.++++ .+.++|+++++++
T Consensus 156 ~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~l 235 (496)
T PLN02376 156 FDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHL 235 (496)
T ss_pred hHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 999887 5899999998753 2 2211 2478999999999999999993 4556788899999
Q ss_pred EEeecccCCC-----CCcCC---C-------CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCCh
Q 018172 159 IHDLAYYWPQ-----YTPIT---G-------AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSK 223 (360)
Q Consensus 159 i~D~ay~~~~-----~~~~~---~-------~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~ 223 (360)
|+||+|.+.. +.++. . ..+++++++||||.||+||+|+||+++.++.+.+.+...... ...+.
T Consensus 236 I~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~~--~~vs~ 313 (496)
T PLN02376 236 VVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSF--GLVSS 313 (496)
T ss_pred EEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHhhc--CCCCH
Confidence 9999998521 22221 1 113567799999999999999999999667777766655432 35788
Q ss_pred HHHHHHHHHhcccCCCc-hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---
Q 018172 224 ESQLRAAKILGIVSDDY-PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED--- 299 (360)
Q Consensus 224 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 299 (360)
+.|.++.++++ .+.+ +.++++.+++++++++.+.+.|++. ++.+..+.+++ |+|++++..
T Consensus 314 ~~Q~a~~~~L~--d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~~aG~-------------flwi~l~~~~~~ 377 (496)
T PLN02376 314 QTQLMLASMLS--DDQFVDNFLMESSRRLGIRHKVFTTGIKKA-DIACLTSNAGL-------------FAWMDLRHLLRD 377 (496)
T ss_pred HHHHHHHHHhC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCceE-------------EEEEEchhhhcc
Confidence 99999999887 2333 4778888999999999999999987 45555566655 788887521
Q ss_pred --------HHHHHHHHhhCeeeeCCCCCCC-CCCeEEEEecC-ChHHHHHHHHHHHHHHhchh
Q 018172 300 --------EDCEKLLRAERIMARGGRRFGA-DAKYARVSMLS-REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 300 --------~~~~~~l~~~gI~~~pg~~f~~-~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~~ 352 (360)
+.+..++++.||.+.||+.|+. .++|+||+|+. +++.+++++++|.+++.+.+
T Consensus 378 ~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~~~ 440 (496)
T PLN02376 378 RNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDFVSKNK 440 (496)
T ss_pred CCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHhh
Confidence 2334455567999999999975 57899999986 88999999999999997543
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=321.22 Aligned_cols=304 Identities=18% Similarity=0.318 Sum_probs=242.9
Q ss_pred cccccccCCCCccccccHHHHHHHHHHHhhc-C--CCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCC
Q 018172 22 DLMSYLSDMGNVCWFLVPELAEAINNLHHVV-D--NAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98 (360)
Q Consensus 22 ~~~~~y~~~~g~~~~~~~~lr~~la~~~~~~-~--~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~ 98 (360)
+....|.+..|. ++||+++|+|++.+ + .++++ ++|++|+|+++++.+++.+++++||. |+++.|+|+
T Consensus 86 ~~~~~y~~~~G~-----~~LR~aiA~~l~~~~~~~~~v~p-~~Ivit~G~t~al~~l~~~l~~pGD~----Vlv~~P~Y~ 155 (447)
T PLN02607 86 RENALFQDYHGL-----KSFRQAMASFMEQIRGGKARFDP-DRIVLTAGATAANELLTFILADPGDA----LLVPTPYYP 155 (447)
T ss_pred chhhccCCCcch-----HHHHHHHHHHHHHhcCCCCCcCH-HHeEEcCChHHHHHHHHHHhCCCCCE----EEEcCCCCc
Confidence 345668898998 99999999998753 3 24555 58999999999999999999999998 999999999
Q ss_pred CcHHHHH-HhCCeeeeecCCc-ccccc---------------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcE
Q 018172 99 QYPAETD-YLRSGLYKWDGDA-NTFDK---------------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGK 157 (360)
Q Consensus 99 ~~~~~~~-~~g~~~~~~~~~~-~~~~~---------------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~ 157 (360)
.+...+. ..|+++++++.+. +++.. ..++|+|+++|||||||.++++ .+.++|++++++
T Consensus 156 ~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~ 235 (447)
T PLN02607 156 GFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIH 235 (447)
T ss_pred chHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCE
Confidence 9998887 4799999988763 23321 1378999999999999999993 455778889999
Q ss_pred EEEeecccCC-----CCCcCC---------CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCCh
Q 018172 158 LIHDLAYYWP-----QYTPIT---------GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSK 223 (360)
Q Consensus 158 li~D~ay~~~-----~~~~~~---------~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~ 223 (360)
+|+||+|.+. .+.++. +..+++++++||||.||++|+|+||+++.++++++.+.....+ .+.+.
T Consensus 236 lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~--~~~s~ 313 (447)
T PLN02607 236 LVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLVSS 313 (447)
T ss_pred EEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhhc--CCCCH
Confidence 9999999842 122221 1256899999999999999999999998677887877765432 35688
Q ss_pred HHHHHHHHHhcccCCCc-hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----
Q 018172 224 ESQLRAAKILGIVSDDY-PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---- 298 (360)
Q Consensus 224 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 298 (360)
++|.++..+|+. +.+ +.++++.+++++++++.+.+.|+++ ++.+..+.+++ |+|++++.
T Consensus 314 ~~q~~~~~~L~d--~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~~~~~~ag~-------------fvw~~L~~~~~~ 377 (447)
T PLN02607 314 QTQHLLASMLSD--EEFTENYIRTNRERLRKRYEMIVQGLRRA-GIECLKGNAGL-------------FCWMNLSPLLET 377 (447)
T ss_pred HHHHHHHHHhCC--chhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccCCeeE-------------EEEEEchHhhcC
Confidence 899999998872 232 3778899999999999999999987 45555565555 78888753
Q ss_pred ----h-HHH-HHHHHhhCeeeeCCCCCCC-CCCeEEEEecC-ChHHHHHHHHHHHHHHhchhc
Q 018172 299 ----D-EDC-EKLLRAERIMARGGRRFGA-DAKYARVSMLS-REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 299 ----~-~~~-~~~l~~~gI~~~pg~~f~~-~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~~~ 353 (360)
. ..+ .++++++||.+.||..|+. .++|+|++|+. +++++++++++|.+++++.+.
T Consensus 378 ~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~~~~ 440 (447)
T PLN02607 378 PTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRFMDRRKT 440 (447)
T ss_pred CCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 1 233 3556668999999999975 58999999986 899999999999999977543
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=320.47 Aligned_cols=294 Identities=17% Similarity=0.222 Sum_probs=239.7
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCC-CCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNA-VSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~-~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
..|++ .|. ++||++++++++. .|.. ++++++|++|+|+++++..++..++++||+ |+++.|+|+.+..
T Consensus 76 ~~Y~~-~G~-----~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~~gd~----Vlv~~P~y~~~~~ 145 (410)
T PRK06290 76 RGYAD-NGI-----QEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDV----TLMTVPGYPVTGT 145 (410)
T ss_pred CCCCC-CCc-----HHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCCCCCE----EEEeCCCCccHHH
Confidence 45764 777 9999999999865 4766 766557999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC
Q 018172 103 ETDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
.++..|++++.++++.+ ++.. ..++++|++++||||||.++++ .+.++|++++++||+||+|.+..
T Consensus 146 ~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~ 225 (410)
T PRK06290 146 HTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALT 225 (410)
T ss_pred HHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhce
Confidence 99999999999998753 3322 2478999999999999999993 45567888999999999998532
Q ss_pred C----CcC---CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCch
Q 018172 169 Y----TPI---TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 169 ~----~~~---~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
+ .+. ....+++++++||||.||++|+|+||+++ ++++++.+...+.....+.+.+.|.++..+++ +.
T Consensus 226 ~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~-~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~---~~-- 299 (410)
T PRK06290 226 FDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVG-NELIVKAFATVKDNNDSGQFIAIQKAGIYALD---HP-- 299 (410)
T ss_pred eCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEe-CHHHHHHHHHHHhccccCCcHHHHHHHHHHhh---Cc--
Confidence 1 122 22346789999999999999999999998 89999999988877777788899999988887 33
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----------hHHH-HHHHHhhC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----------DEDC-EKLLRAER 310 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~l~~~g 310 (360)
.++++.++.++++++.+.+.|+++ ++.+..|.|++ |+|+++++ ...+ ..++++.+
T Consensus 300 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~f-------------~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~ 365 (410)
T PRK06290 300 EITEKIREKYSRRLDKLVKILNEV-GFKAEMPGGTF-------------YLYVKAPKGTKSGIKFENAEEFSQYLIKEKL 365 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCeee-------------EEEEECCCccccCCCCCCHHHHHHHHHHhCC
Confidence 788999999999999999999998 45555566665 66777652 3344 44555557
Q ss_pred eeeeCCCCCCCCCCeEEEEecC---ChHHHHHHHHHHHHHHhch
Q 018172 311 IMARGGRRFGADAKYARVSMLS---REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 311 I~~~pg~~f~~~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~ 351 (360)
+.++||..|+ +++||+++. ++|+.++++++|++.+.+.
T Consensus 366 v~~~p~~~~~---~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 366 ISTVPWDDAG---HFLRFSVTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred EEEECCcccc---CeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence 7888987664 599999974 7899999999999998763
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-43 Score=310.07 Aligned_cols=313 Identities=15% Similarity=0.231 Sum_probs=253.7
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~ 101 (360)
..+.|+...|+ ++|+++|++.+.- .|....+.++|+||.|+.+++..++.+++++||+ |++.+|.|.+|.
T Consensus 61 ~~~qYt~~~G~-----p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDe----Vii~eP~fd~Y~ 131 (420)
T KOG0257|consen 61 STNQYTRGYGL-----PQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDE----VIVFEPFFDCYI 131 (420)
T ss_pred hhccccccCCc-----hHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCE----EEEecCcchhhh
Confidence 35779988888 9999999997654 6777888889999999999999999999999999 999999999999
Q ss_pred HHHHHhCCeeeeecCC-------cccc-------cc--CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEe
Q 018172 102 AETDYLRSGLYKWDGD-------ANTF-------DK--NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHD 161 (360)
Q Consensus 102 ~~~~~~g~~~~~~~~~-------~~~~-------~~--~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D 161 (360)
....+.|..++.+++. .+.+ +. +++||+|++|+||||||.++++ .+.++|++||+++|+|
T Consensus 132 ~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisD 211 (420)
T KOG0257|consen 132 PQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISD 211 (420)
T ss_pred hHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEh
Confidence 9999999999887755 1111 11 4799999999999999999994 4567899999999999
Q ss_pred ecccC----C----CCCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHh
Q 018172 162 LAYYW----P----QYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKIL 233 (360)
Q Consensus 162 ~ay~~----~----~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 233 (360)
|+|.. + .+.++++.+++++.++|++|+||++|||+||+++ ++.+...+...+....+..+++.|.|.++++
T Consensus 212 evYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~ig-p~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~ 290 (420)
T KOG0257|consen 212 EVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIG-PKHLYSALFPVHQNFVFTCPTPIQEASAAAF 290 (420)
T ss_pred hHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeec-hHHhhhhHHHHhhccccccCcHHHHHHHHHH
Confidence 99983 2 2455678999999999999999999999999999 9999999999998888999999999999988
Q ss_pred cccCC--Cc--hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCc-ccc-cCCch-HHHHHHH
Q 018172 234 GIVSD--DY--PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGF-AWL-ESKED-EDCEKLL 306 (360)
Q Consensus 234 ~~~~~--~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~-~~~~~~l 306 (360)
..-.. +. ..++.++.+.|+++|+.+.+.|.++ ++.+..|+|++|.+.+........+ --+ +-+++ ..+.-++
T Consensus 291 ~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l-g~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~ 369 (420)
T KOG0257|consen 291 ALELACLQPGGSYFITELVKEYKEKRDILAKALEEL-GLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLI 369 (420)
T ss_pred hhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhh
Confidence 74321 11 1455559999999999999999999 7888889888844432220000000 000 00112 5567899
Q ss_pred HhhCeeeeCCCCCCCC------CCeEEEEecCChHHHHHHHHHHHH
Q 018172 307 RAERIMARGGRRFGAD------AKYARVSMLSREEIFNIFLERLSA 346 (360)
Q Consensus 307 ~~~gI~~~pg~~f~~~------~~~~R~s~~~~~e~~~~~~~~l~~ 346 (360)
++.|+.+.|++.|+.. .+++|+++..++|.++.+.+++++
T Consensus 370 ~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k~~~~L~~a~e~l~~ 415 (420)
T KOG0257|consen 370 KEGGVVVIPPSAFGSREHIKVAERLVRFCFCKADETLRKAIERLKK 415 (420)
T ss_pred ccCcEEEeCchhcCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 9999999999999752 457899998899999999998883
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=319.09 Aligned_cols=298 Identities=19% Similarity=0.210 Sum_probs=248.3
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
.+|+++.|. ++||+++++++..+ |..+.+ ++|++|+|++++++.++..++++||+ |++++|+|..|...
T Consensus 64 ~~Y~~~~G~-----~~lr~~ia~~l~~~~g~~~~~-~~i~~t~G~~~al~~~~~~~~~~gd~----vl~~~p~y~~y~~~ 133 (402)
T PRK06107 64 TKYTLVNGT-----PALRKAIIAKLERRNGLHYAD-NEITVGGGAKQAIFLALMATLEAGDE----VIIPAPYWVSYPDM 133 (402)
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHhcCCCCCh-hhEEEeCCHHHHHHHHHHHhcCCCCE----EEEecCCCcCHHHH
Confidence 469999998 99999999998644 776666 48999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCc-ccccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhc-CcEEEEeecccCCC
Q 018172 104 TDYLRSGLYKWDGDA-NTFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSA-EGKLIHDLAYYWPQ 168 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~-~~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~-~~~li~D~ay~~~~ 168 (360)
+...+.+++.++.+. +++.. .++++++++++||||||.+++. .+.++|+++ ++++|+||+|.+..
T Consensus 134 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~ 213 (402)
T PRK06107 134 VLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIR 213 (402)
T ss_pred HHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccc
Confidence 998898888877653 33322 3578999999999999999983 445677777 99999999997421
Q ss_pred -----CCcCC----CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCC
Q 018172 169 -----YTPIT----GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 169 -----~~~~~----~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
.+++. +..+++++++||||.|++||+|+||+++ ++++++.+.......+.+++.+.|.++..++.. +
T Consensus 214 ~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~- 289 (402)
T PRK06107 214 FDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAG-PADLIAAINKLQSQSSSCPSSISQAAAAAALNG--D- 289 (402)
T ss_pred cCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeec-CHHHHHHHHHHHHhcccCCChHHHHHHHHHhcC--C-
Confidence 12221 2346899999999999999999999998 899999999988877889999999999998862 3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--------------ch-HHHHH
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------------ED-EDCEK 304 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~ 304 (360)
..++++.++.++++++.+.+.|++++++.+..|.+++ |+|++++ +. +.+..
T Consensus 290 -~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (402)
T PRK06107 290 -QSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAF-------------YLYVNCAGLIGKTTPEGKVLETDQDVVLY 355 (402)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcce-------------EEeeecccccccccccccCCCCHHHHHHH
Confidence 3789999999999999999999988677776777776 5666541 22 45667
Q ss_pred HHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 305 LLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 305 ~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
+++++||.++||..|+. ++++||+++.++|++++++++|.+++++-
T Consensus 356 l~~~~gv~v~pg~~Fg~-~~~iRis~~~~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 356 LLDSAGVAVVQGTAYGL-SPYFRLSIATSLETLEEACARIERAVAAL 401 (402)
T ss_pred HHHhCCEEEeCccccCC-CCeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 88889999999999985 67999999889999999999999988653
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=329.88 Aligned_cols=301 Identities=18% Similarity=0.228 Sum_probs=238.3
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCC-CCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNA-VSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~-~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|+++.|. ++||+++++++..++.. +++ ++|++|+|+++++++++.+++++||+ |++++|+|+.|...
T Consensus 179 ~~Y~~~~G~-----~~lReaia~~~~~~~~~~~~~-~~I~it~G~~eal~~~~~~l~~~Gd~----Vli~~P~y~~y~~~ 248 (517)
T PRK13355 179 EGYSDSKGL-----FSARKAIMQYAQLKGLPNVDV-DDIYTGNGVSELINLSMSALLDDGDE----VLIPSPDYPLWTAC 248 (517)
T ss_pred CCCCCCcCh-----HHHHHHHHHHHHhcCCCCCCh-hHEEEeCcHHHHHHHHHHHhCCCCCE----EEEcCCCCcCHHHH
Confidence 469999998 99999999998776653 555 58999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCC
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
++..|++++.++.+.+ ++.. ++++++|+++|||||||.++++ .+.++|++++++||+||+|.+..+
T Consensus 249 ~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~ 328 (517)
T PRK13355 249 VNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVM 328 (517)
T ss_pred HHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcC
Confidence 9999999998887643 2322 3689999999999999999993 455678889999999999984322
Q ss_pred -----CcCCCC--CCccEEEeccccccCCCCceEEEEeec-CHH----HHHHHHHHHhhccccCChHHHHHHHHHhcccC
Q 018172 170 -----TPITGA--ADHDIMLFTLSKCTGHAGSRIGWALVK-DTE----VARKMTRFIELGSIGVSKESQLRAAKILGIVS 237 (360)
Q Consensus 170 -----~~~~~~--~~~~i~~~S~sK~~~~~G~r~G~~~~~-~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (360)
.++... ...+++++||||+|+++|+|+||++++ +.+ +++.+.... ....+.+.++|.++.++|...
T Consensus 329 ~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~a~~~aL~~~- 406 (517)
T PRK13355 329 DGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLA-NMRLCSNVPAQSIVQTALGGH- 406 (517)
T ss_pred CCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHHh-cCcCCcChHHHHHHHHHhcCC-
Confidence 222221 224677899999999999999999962 344 344443332 234678899999999988631
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-------ch-HHHHHHHHhh
Q 018172 238 DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-------ED-EDCEKLLRAE 309 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~l~~~ 309 (360)
..+..++.+.++ +.++|+++.+.|++++++.+..|.|++ |+|++++ +. +++.++|.++
T Consensus 407 ~~~~~~~~~~~~-~~~~r~~l~~~L~~~~g~~~~~p~g~f-------------y~~~~l~~~~~~~~~~~~~~~~ll~~~ 472 (517)
T PRK13355 407 QSVKDYLVPGGR-VYEQRELVYNALNAIPGISAVKPKAAF-------------YIFPKIDVKKFNIHDDEQFALDLLHDK 472 (517)
T ss_pred ccHHHHHHHHHH-HHHHHHHHHHHHhcCCCcccCCCCeee-------------EEEeecCcccCCCCCHHHHHHHHHHhC
Confidence 123466666544 456689999999998778888888877 5565553 23 6778899999
Q ss_pred CeeeeCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 310 RIMARGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 310 gI~~~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
||.++||..|+. .++|+|++++.+++++++++++|.+++.+.
T Consensus 473 gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~~a~~rl~~~~~~~ 515 (517)
T PRK13355 473 KVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMDRLADFFSYY 515 (517)
T ss_pred CEEEeCcchhCCCCcCEEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999974 578999999779999999999999999754
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=318.00 Aligned_cols=298 Identities=19% Similarity=0.240 Sum_probs=246.0
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|+++.|. ++||++++++++.. |..+++ ++|++|+|+++++..++..++++||+ |++++|+|+.+...
T Consensus 55 ~~Y~~~~G~-----~~lr~~la~~~~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~----vl~~~p~y~~~~~~ 124 (382)
T PRK06108 55 TFYTHNLGI-----PELREALARYVSRLHGVATPP-ERIAVTSSGVQALMLAAQALVGPGDE----VVAVTPLWPNLVAA 124 (382)
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHhCCCcCc-ceEEEeCChHHHHHHHHHHhcCCCCE----EEEeCCCccchHHH
Confidence 358888888 99999999997643 666665 48999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcc--cccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC
Q 018172 104 TDYLRSGLYKWDGDAN--TFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~--~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
++..|++++.++.+.+ ++.. +++++++++++||||||.+++ +.+.++|+++++++|+||+|.+..
T Consensus 125 ~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~ 204 (382)
T PRK06108 125 PKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLY 204 (382)
T ss_pred HHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhc
Confidence 9999999999987642 2211 357899999999999999998 345677888999999999998532
Q ss_pred CC------c---CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCC
Q 018172 169 YT------P---ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 169 ~~------~---~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
+. + +....++++++.||||.||++|+|+||+++ ++++++.+.+.......+.+.+.|.++..++.. .
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~--~- 280 (382)
T PRK06108 205 YAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVA-PPALGQVLEKLIEYNTSCVAQFVQRAAVAALDE--G- 280 (382)
T ss_pred cCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeC-CHHHHHHHHHHHHhcccCCChHHHHHHHHHHhC--C-
Confidence 21 1 112346899999999999999999999999 899999998877666677899999999998873 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---h-HHHHHHHHhhCeeeeC
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---D-EDCEKLLRAERIMARG 315 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~gI~~~p 315 (360)
..++++.+++++++++.+.+.|++++++.+..|.+++ |+|+++++ . +.+..+++++||.++|
T Consensus 281 -~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~-------------~~~~~l~~~~~~~~~~~~ll~~~gV~v~p 346 (382)
T PRK06108 281 -EDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAM-------------YAFFRIPGVTDSLALAKRLVDEAGLGLAP 346 (382)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeE-------------EEEEeCCCCCCHHHHHHHHHHhCCEEEeC
Confidence 3788999999999999999999988666666665554 77888764 2 4445556778999999
Q ss_pred CCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 316 GRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 316 g~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
|..|+. .++++|+|++.+++++++++++|++++++
T Consensus 347 g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~ 382 (382)
T PRK06108 347 GTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLAR 382 (382)
T ss_pred chhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhC
Confidence 998864 46899999988999999999999998754
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=318.07 Aligned_cols=297 Identities=19% Similarity=0.216 Sum_probs=242.4
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. ++||++++++++. +|..+++ ++|++|+|++++++.++..++++||+ |++++|+|+.+...
T Consensus 61 ~~Y~~~~g~-----~~lr~~ia~~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~----Vlv~~p~y~~~~~~ 130 (388)
T PRK07337 61 TQYTSALGL-----APLREAIAAWYARRFGLDVAP-ERIVVTAGASAALLLACLALVERGDE----VLMPDPSYPCNRHF 130 (388)
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCh-HhEEEecCcHHHHHHHHHHhcCCCCE----EEEeCCCchhhHHH
Confidence 458888887 9999999999864 4666666 48999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
++..|++++.++++.+ ++.. ++++++|++++||||||.+++ +.+.++|+++++++|+||+|.+..+
T Consensus 131 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 210 (388)
T PRK07337 131 VAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSY 210 (388)
T ss_pred HHHcCCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEecccccccc
Confidence 9999999999987642 2222 358899999999999999998 3455778889999999999985322
Q ss_pred ----CcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHH
Q 018172 170 ----TPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFE 245 (360)
Q Consensus 170 ----~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (360)
.+.....+++++++||||.|+++|+|+||+++ ++++++.+.........+.+.+.|.++..++.. .. ..++.
T Consensus 211 ~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~-~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~--~~-~~~~~ 286 (388)
T PRK07337 211 DAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVV-PEALVGTFEKLAQNLFICASALAQHAALACFEP--DT-LAIYE 286 (388)
T ss_pred CCCCcChhhccCCEEEEEechhhcCCchhheeeeec-CHHHHHHHHHHHHHhccCCChHHHHHHHHHhcc--Cc-hHHHH
Confidence 22223456788999999999999999999999 889999998887767778899999999888762 22 24568
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--------h-HHHHHHHHhhCeeeeCC
Q 018172 246 YGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--------D-EDCEKLLRAERIMARGG 316 (360)
Q Consensus 246 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~l~~~gI~~~pg 316 (360)
+.++.++++++.+.+.|++++......|.+++ |+|+++++ . +.+..+++++||.+.||
T Consensus 287 ~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~-------------f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg 353 (388)
T PRK07337 287 RRRAEFKRRRDFIVPALESLGFKVPVMPDGAF-------------YVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPG 353 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCeeE-------------EEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCc
Confidence 88999999999999999987432223455554 88888752 2 44556788899999999
Q ss_pred CCCCC--CCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 317 RRFGA--DAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 317 ~~f~~--~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
..|+. .++|+|++++.+++.+++++++|.+++
T Consensus 354 ~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 354 RDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF 387 (388)
T ss_pred hhhCCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence 99974 367999999888999999999998875
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=315.73 Aligned_cols=289 Identities=21% Similarity=0.265 Sum_probs=239.3
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc-CCC-CCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV-DNA-VSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~-~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~ 101 (360)
..|+++.|. ++||+++++++..+ |.+ +++ ++|++|+|+++++..++..+ +++||+ |++++|+|+.+.
T Consensus 56 ~~Y~~~~G~-----~~lr~~ia~~l~~~~~~~~~~~-~~I~it~G~~~~i~~~~~~l~~~~gd~----Vl~~~p~y~~~~ 125 (364)
T PRK07865 56 PGYPTTAGT-----PELREAIVGWLARRRGVTGLDP-AAVLPVIGSKELVAWLPTLLGLGPGDV----VVIPELAYPTYE 125 (364)
T ss_pred CCCCCccCC-----HHHHHHHHHHHHHHcCCCCCCc-ccEEEccChHHHHHHHHHHHcCCCCCE----EEECCCCcccHH
Confidence 369988888 99999999998654 665 666 48999999999999988888 789998 999999999999
Q ss_pred HHHHHhCCeeeeecCCccccccCCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCC----CcCC
Q 018172 102 AETDYLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQY----TPIT 173 (360)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~----~~~~ 173 (360)
..++..|++++.++. .+.+.. .++++|++++||||||.+++. .+.++|+++++++|+||+|.+..+ .+..
T Consensus 126 ~~~~~~g~~~~~~~~-~~~l~~-~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~ 203 (364)
T PRK07865 126 VGARLAGATVVRADS-LTELGP-QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSIL 203 (364)
T ss_pred HHHHhcCCEEEecCC-hhhCCc-ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccc
Confidence 999999999998863 233333 578999999999999999983 455677889999999999985221 1111
Q ss_pred ------CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 174 ------GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 174 ------~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
...+++++++||||+|+++|+|+||+++ ++++++.+...+.....+.+.+.|.++.+++. + ..++++.
T Consensus 204 ~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~--~~~~~~~ 277 (364)
T PRK07865 204 DPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAG-DPALVAELLEVRKHAGMMVPAPVQAAMVAALG---D--DAHVREQ 277 (364)
T ss_pred cccccCCccceEEEEeechhccCCCceeeEEEec-CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC---C--HHHHHHH
Confidence 1346799999999999999999999998 89999999888776777889999999988886 3 2788999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCC-CCCe
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGA-DAKY 325 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~-~~~~ 325 (360)
++.++++++.+.+.|+++ ++.+..+.+++ |+|+.++.. ..+.+.|.++||.++||..|+. .+++
T Consensus 278 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~ 343 (364)
T PRK07865 278 RERYARRRAVLRPALEAA-GFRVDHSEAGL-------------YLWATRGEDCWDTVAWLAERGILVAPGDFYGPAGAQH 343 (364)
T ss_pred HHHHHHHHHHHHHHHHHc-CCcccCCCccE-------------EEEEeCCCCHHHHHHHHHHCCEEEeCccccCcCCCCE
Confidence 999999999999999987 45555555554 678877543 5667888899999999998875 4689
Q ss_pred EEEEecCChHHHHHHHHHHH
Q 018172 326 ARVSMLSREEIFNIFLERLS 345 (360)
Q Consensus 326 ~R~s~~~~~e~~~~~~~~l~ 345 (360)
+||+++.++|++++++++|+
T Consensus 344 iRi~~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 344 VRVALTATDERIAAAVERLA 363 (364)
T ss_pred EEEEecCCHHHHHHHHHHhh
Confidence 99999888999999999885
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=317.63 Aligned_cols=299 Identities=20% Similarity=0.254 Sum_probs=244.4
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|+++.|. ++||++++++++. ++..++++++|++|+|+++++++++..++++||+ |++++|+|..+..+
T Consensus 61 ~~Y~~~~g~-----~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~----vl~~~p~y~~~~~~ 131 (391)
T PRK07309 61 SHYTGMAGL-----LELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDK----VLLPAPAYPGYEPI 131 (391)
T ss_pred CCCCCCCCc-----HHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCE----EEEeCCCCcchHHH
Confidence 458888887 9999999999864 5777776678999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcccccc------------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCC
Q 018172 104 TDYLRSGLYKWDGDANTFDK------------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWP 167 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~------------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~ 167 (360)
++..|.+++.++.+.+++.. .++++++++++||||||.+++ +.+.++|+++++++|+|++|.+.
T Consensus 132 ~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~ 211 (391)
T PRK07309 132 VNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSEL 211 (391)
T ss_pred HHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccce
Confidence 99999999998876443321 136899999999999999998 34567788899999999999853
Q ss_pred CC-----CcCC-CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCch
Q 018172 168 QY-----TPIT-GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 168 ~~-----~~~~-~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
.+ .++. ...++++++.||||+||++|+|+||+++ ++++++.+.........+++.+.|.++..+++. ..
T Consensus 212 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~-- 286 (391)
T PRK07309 212 TYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFA-PAEFTAQLIKSHQYLVTAATTMAQFAAVEALTN--GK-- 286 (391)
T ss_pred eeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEe-CHHHHHHHHHHHhhcccCCChHHHHHHHHHHhC--Ch--
Confidence 22 1222 2357899999999999999999999999 899999998776655668899999999998873 21
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----h-HHHHHHHHhhCeeeeC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----D-EDCEKLLRAERIMARG 315 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~l~~~gI~~~p 315 (360)
.+....++.++++++.+.+.|+++ ++.+..|.+++ |+|++++. . +.+.++++++||.+.|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~-------------~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~p 352 (391)
T PRK07309 287 DDALPMKKEYIKRRDYIIEKMTDL-GFKIIKPDGAF-------------YIFAKIPAGYNQDSFKFLQDFARKKAVAFIP 352 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeE-------------EEEEECCCCCCCCHHHHHHHHHHhCCEEEeC
Confidence 345677889999999999999988 45666666655 67777653 2 3344567788999999
Q ss_pred CCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 316 GRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 316 g~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
|..|+. .++++|++++.+.+++++++++|++++++.
T Consensus 353 g~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~~~~~~ 389 (391)
T PRK07309 353 GAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYMEEH 389 (391)
T ss_pred chhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 999965 468999999888899999999999998664
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=318.93 Aligned_cols=300 Identities=19% Similarity=0.236 Sum_probs=248.0
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|+++.|. ++||++++++++. +|..++++++|++|+|++++++.++..++++||+ |++++|+|+.+..
T Consensus 60 ~~~Y~~~~G~-----~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~----Vlv~~P~y~~~~~ 130 (395)
T PRK08175 60 THGYSTSRGI-----PRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDT----VLVPNPSYPIHIY 130 (395)
T ss_pred cCCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCE----EEEcCCCCcchHH
Confidence 3569999998 9999999999864 4777776657999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcccc-----cc-----CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC
Q 018172 103 ETDYLRSGLYKWDGDANTF-----DK-----NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~~~-----~~-----~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
.++..|++++.++.+.++. +. .++++++++++||||||.+++. .+.++|+++|+++|+||+|.+..
T Consensus 131 ~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~ 210 (395)
T PRK08175 131 GAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIV 210 (395)
T ss_pred HHHHcCCeEEEEecccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhc
Confidence 9999999999998875432 11 1478999999999999999993 56678888999999999997422
Q ss_pred -----CCcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCc
Q 018172 169 -----YTPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 169 -----~~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
.+++. ...+++++++||||.||+||+|+||+++ ++++++.+.+.+.....+.+.+.|.++..++.. .
T Consensus 211 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~-- 285 (395)
T PRK08175 211 YDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG-NPELVSALARIKSYHDYGTFTPLQVAAIAALEG--D-- 285 (395)
T ss_pred cCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeC-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC--c--
Confidence 12222 2246788999999999999999999998 899999999888777788888999988888863 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc------hHHH-HHHHHhhCeee
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE------DEDC-EKLLRAERIMA 313 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~l~~~gI~~ 313 (360)
+.++++.++.++++++++.+.|+.++ +.+..|.+++ |+|+++++ ..++ .++++++||.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~p~~g~-------------~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v 351 (395)
T PRK08175 286 QQCVRDIAEQYKRRRDVLVKGLHEAG-WMVEMPKASM-------------YVWAKIPEPYAAMGSLEFAKKLLNEAKVCV 351 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-CcccCCCEEE-------------EEEEECCcccCCCCHHHHHHHHHHhCCEEE
Confidence 37899999999999999999999984 5555555554 78888864 2344 45666889999
Q ss_pred eCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 314 RGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 314 ~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
.||..|+. .++++||+++.+++.+++++++|.+++.+.
T Consensus 352 ~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l~~~ 390 (395)
T PRK08175 352 SPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRAD 390 (395)
T ss_pred eCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 99999965 457999999778999999999999999754
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=319.54 Aligned_cols=298 Identities=15% Similarity=0.188 Sum_probs=239.5
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|.+..|. ++||++++++++..+..+++ ++|++|+|+++++.+++..++++||+ |+++.|+|..+..++
T Consensus 67 ~~Y~~~~g~-----~~lr~aia~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~----v~i~~P~y~~~~~~~ 136 (401)
T TIGR01264 67 NGYAPTVGA-----LSAREAIASYYHNPDGPIEA-DDVVLCSGCSHAIEMCIAALANAGQN----ILVPRPGFPLYETLA 136 (401)
T ss_pred CCCCCCCCC-----HHHHHHHHHHHhhcCCCCCH-HHEEECcChHHHHHHHHHHhCCCCCE----EEEeCCCChhHHHHH
Confidence 458888887 99999999999877776655 58999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCCcc---cccc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC--
Q 018172 105 DYLRSGLYKWDGDAN---TFDK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ-- 168 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~---~~~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~-- 168 (360)
+..|++++.++++.+ +++. +.+++++++++||||||.+++ +.+.++|+++++++|+||+|.+..
T Consensus 137 ~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~ 216 (401)
T TIGR01264 137 ESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFS 216 (401)
T ss_pred HHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccC
Confidence 999999998876532 2221 256899999999999999998 245577788999999999998532
Q ss_pred ---CCcCCC--CCCccEEEeccccccCCCCceEEEEeecCH-----HHHHHHHHHHhhccccCChHHHHHHHHHhcccCC
Q 018172 169 ---YTPITG--AADHDIMLFTLSKCTGHAGSRIGWALVKDT-----EVARKMTRFIELGSIGVSKESQLRAAKILGIVSD 238 (360)
Q Consensus 169 ---~~~~~~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (360)
..++.. ...++++++||||+|+++|+|+||++++++ ++++.+..... ...+.+.+.|.++.+++..
T Consensus 217 ~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~--- 292 (401)
T TIGR01264 217 GATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLR--- 292 (401)
T ss_pred CcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHh---
Confidence 222222 223589999999999999999999998432 35555555433 3467789999999998863
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--------ch-HHHHHHHHhh
Q 018172 239 DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------ED-EDCEKLLRAE 309 (360)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~l~~~ 309 (360)
..+.++++.++.++++++.+.+.|+.++++.+..|.+++ |+|++++ +. +.+..+++++
T Consensus 293 ~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~-------------f~~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (401)
T TIGR01264 293 TPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAM-------------YMMVGIEMEHFPEFKNDVEFTERLVAEQ 359 (401)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeee-------------EEEEEecccccCCCCCHHHHHHHHHHhC
Confidence 224899999999999999999999988655555565555 7888753 22 4455556789
Q ss_pred CeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 310 RIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 310 gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
||.++||..|+. ++++|++++.+++++++++++|.+++++
T Consensus 360 gI~v~pg~~f~~-~~~iRis~~~~~~~l~~~l~rl~~~~~~ 399 (401)
T TIGR01264 360 SVFCLPGSCFEY-PGFFRVVLTVPVVMMEEACSRIQEFCER 399 (401)
T ss_pred CEEEeCchhcCC-CCeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 999999999974 7899999988899999999999999865
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=295.35 Aligned_cols=310 Identities=18% Similarity=0.253 Sum_probs=257.6
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~ 101 (360)
..+.|++..|. ...|+++|+|+. ......+++ +|++|+|.+|++.+++.+|.+||.. |++|.|+|+.|.
T Consensus 95 k~N~Yaps~G~-----~~AR~AVAeYl~~~l~~kl~a~-DV~ltsGC~qAIe~~i~~LA~p~aN----ILlPrPGfp~Y~ 164 (447)
T KOG0259|consen 95 KGNGYAPSVGI-----LPARRAVAEYLNRDLPNKLTAD-DVVLTSGCSQAIELAISSLANPGAN----ILLPRPGFPLYD 164 (447)
T ss_pred CCCCcCCcccc-----HHHHHHHHHHhhcCCCCccCcC-ceEEeccchHHHHHHHHHhcCCCCc----eecCCCCCchHH
Confidence 34779999998 999999999954 445566654 7999999999999999999999999 999999999999
Q ss_pred HHHHHhCCeeeeecCC--------cccccc--CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCC
Q 018172 102 AETDYLRSGLYKWDGD--------ANTFDK--NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWP 167 (360)
Q Consensus 102 ~~~~~~g~~~~~~~~~--------~~~~~~--~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~ 167 (360)
.-+.-.|.+++.+++- .++++. |++|.+++++|||||+|.+++ ++++++|+++++.+|.||+|...
T Consensus 165 ~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~ 244 (447)
T KOG0259|consen 165 TRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHT 244 (447)
T ss_pred HhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhccee
Confidence 9999999999976643 333332 789999999999999999999 36778888899999999999842
Q ss_pred -----CCCcCC--CCCCccEEEeccccccCCCCceEEEEeecC-------HHHHHHHHHHHhhccccCChHHHHHHHHHh
Q 018172 168 -----QYTPIT--GAADHDIMLFTLSKCTGHAGSRIGWALVKD-------TEVARKMTRFIELGSIGVSKESQLRAAKIL 233 (360)
Q Consensus 168 -----~~~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 233 (360)
.+.++. ...--++.++|.||-|-.||||+||++..| ...++.+.++.. ...+++++.|.|+...|
T Consensus 245 vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~-~~~~p~TiiQ~AlP~IL 323 (447)
T KOG0259|consen 245 VFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLD-IIPGPATIIQGALPDIL 323 (447)
T ss_pred ecCCCCccchhhccccCceEeecccccccccCCceeeeEEEecccccccchHHHHHHHHHHh-ccCCccHhHHHHhHHHH
Confidence 233332 344457889999999999999999999864 355677777765 56789999999999988
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCe
Q 018172 234 GIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFG-LPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERI 311 (360)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI 311 (360)
+ +...+++++..+.++.+.+..++.|+.++++. ..+|+|++|.+... .. -.+.++.++ +++.++.+++.+
T Consensus 324 ~---kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l---~~--s~~~~~~dD~dFc~kL~~Eesv 395 (447)
T KOG0259|consen 324 E---KTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKL---NL--SLFPDIEDDVDFCQKLAREESV 395 (447)
T ss_pred H---hChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEecc---ch--hhhccccccHHHHHHHhhhcce
Confidence 7 33359999999999999999999999999888 67888888543211 00 022333445 899999999999
Q ss_pred eeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 312 MARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 312 ~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
.+.||..|+. ++|+|++++.+.+.++++.++|++++.|..
T Consensus 396 ~~LPG~af~~-~nw~Ri~i~~~~~~leea~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 396 ICLPGQAFGL-KNWLRIVITVEEEMLEEAFSRIKEFCDRHS 435 (447)
T ss_pred EEeccccccC-CCeEEEEEccChHHHHHHHHHHHHHHHhhh
Confidence 9999999997 889999998899999999999999999875
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=318.78 Aligned_cols=300 Identities=20% Similarity=0.271 Sum_probs=246.3
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|.+..|. ++||++++++++.. |..+++ ++|++|+|+++++.+++..++++||+ |++++|+|..+...
T Consensus 64 ~~Y~~~~g~-----~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~g~~----Vlv~~p~y~~~~~~ 133 (391)
T PRK08361 64 THYTPNAGI-----PELREAIAEYYKKFYGVDVDV-DNVIVTAGAYEATYLAFESLLEEGDE----VIIPDPAFVCYVED 133 (391)
T ss_pred CCCCCCCCc-----HHHHHHHHHHHHHHhCCCCCc-ccEEEeCChHHHHHHHHHHhcCCCCE----EEEcCCCCcccHHH
Confidence 458777887 99999999997643 666666 48999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCccc---ccc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC
Q 018172 104 TDYLRSGLYKWDGDANT---FDK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~---~~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
++..|++++.++.+.++ ++. +++++++++++||||||.+++ +.+.++|+++++++|+||+|.+..+
T Consensus 134 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 213 (391)
T PRK08361 134 AKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLY 213 (391)
T ss_pred HHHcCCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEccccccee
Confidence 99999999999887542 221 357899999999999999998 3456678889999999999985321
Q ss_pred -----CcCC-CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 170 -----TPIT-GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 170 -----~~~~-~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
.+.. ...+++++++||||.||++|+|+||+++ ++++++.+.+.......+.+.+.|.++..+++. ..+..+
T Consensus 214 ~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~ 290 (391)
T PRK08361 214 EGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIA-PEQVIKDMIKLHAYIIGNVASFVQIAGIEALRS--KESWKA 290 (391)
T ss_pred CCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhcc-CHHHHHHHHHHHhhhccCCChHHHHHHHHHhcC--CcccHH
Confidence 1222 2346899999999999999999999999 889999988877666678899999999998873 333368
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHH-HHHHhhCeeeeCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCE-KLLRAERIMARGGRR 318 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~l~~~gI~~~pg~~ 318 (360)
+++.++.++++++.+.+.|++++++.+..|.+++ |+|++++. ...+. .+++++||.+.||..
T Consensus 291 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~-------------~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~ 357 (391)
T PRK08361 291 VEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAF-------------YVFANIDETGMSSEDFAEWLLEKARVVVIPGTA 357 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEE-------------EEEEECCCCCCCHHHHHHHHHHhCCEEEcCchh
Confidence 9999999999999999999998666666666665 67877753 24444 445568999999999
Q ss_pred CCC-CCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 319 FGA-DAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 319 f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
|+. .++++|++++.+++++++++++|++++++
T Consensus 358 f~~~~~~~iRi~~~~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 358 FGKAGEGYIRISYATSKEKLIEAMERMEKALEE 390 (391)
T ss_pred hCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 975 46899999988889999999999998864
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=314.39 Aligned_cols=299 Identities=22% Similarity=0.294 Sum_probs=243.4
Q ss_pred ccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. +++|+++++++. ..|..++++++|++|+|+++++..++..++++||+ |++++|+|..+...
T Consensus 59 ~~Y~~~~G~-----~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~----Vlv~~P~y~~~~~~ 129 (389)
T PRK05957 59 HKYQAVQGI-----PPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDE----IILNTPYYFNHEMA 129 (389)
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCE----EEEeCCCCcCHHHH
Confidence 468888888 999999999875 44766665668999999999999999999999998 99999999999998
Q ss_pred HHHhCCeeeeecCCcc-cccc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCCC-
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQYT- 170 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~~- 170 (360)
++..|++++.++.+.+ +++. ++++++|++++||||||.+++ +.+.++|+++|+++|+||+|.+..+.
T Consensus 130 ~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~ 209 (389)
T PRK05957 130 ITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDG 209 (389)
T ss_pred HHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCC
Confidence 9999999999887633 2222 357999999999999999998 24567788899999999999842211
Q ss_pred ----c---CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 171 ----P---ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 171 ----~---~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
+ +.+...++++++||||.||++|+|+||+++ ++++++.+.........+.+.+.|.++..+++. .. .+
T Consensus 210 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~--~~ 284 (389)
T PRK05957 210 VKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVI-PIHLLEAIKKIQDTILICPPVVSQYAALGALQV--GK--SY 284 (389)
T ss_pred CCccChhhCCCccCcEEEEecchhhccCccceeEEEec-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC--Ch--HH
Confidence 1 124456899999999999999999999998 899999999888767778888999999888862 22 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCCCcccccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVF-GLPEYPLEYCNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~pg~~ 318 (360)
+++.++.++++++.+.+.|+++++. .+..+.+++ |+|++++.. +.+..+++++||.++||+.
T Consensus 285 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~-------------~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~ 351 (389)
T PRK05957 285 CQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAF-------------YCFLKVNTDLNDFELVKQLIREYRVAVIPGTT 351 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeE-------------EEEEeCCCCCChHHHHHHHHHHCCEEEccchh
Confidence 8888899999999999999988653 444555554 778877532 4445555678999999999
Q ss_pred CCCC-CCeEEEEecC-ChHHHHHHHHHHHHHHhc
Q 018172 319 FGAD-AKYARVSMLS-REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 319 f~~~-~~~~R~s~~~-~~e~~~~~~~~l~~~~~~ 350 (360)
|+.. ++++|+|++. +++++++++++|.+.++.
T Consensus 352 f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~ 385 (389)
T PRK05957 352 FGMKNGCYLRIAYGALQKATAKEGIERLVQGLKT 385 (389)
T ss_pred hCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 9753 5699999976 889999999999988764
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=317.49 Aligned_cols=294 Identities=20% Similarity=0.292 Sum_probs=243.2
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. ++||++++++++. .+...+++++|++|+|+++++..++..++++||+ |++++|+|..+...
T Consensus 61 ~~Y~~~~G~-----~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~----Vli~~p~y~~~~~~ 131 (386)
T PRK09082 61 NQYPPMTGV-----AALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDE----VIVFDPSYDSYAPA 131 (386)
T ss_pred CCCCCCCCc-----HHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCE----EEEeCCCchhhHHH
Confidence 468888888 9999999998764 4666666568999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcccccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC--
Q 018172 104 TDYLRSGLYKWDGDANTFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ-- 168 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~-- 168 (360)
++..|++++.++.+.+++.. .++++++++++||||||.+++ +.+.++|+++++++|+|++|.+..
T Consensus 132 ~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~ 211 (386)
T PRK09082 132 IELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFD 211 (386)
T ss_pred HHHcCCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccC
Confidence 99999999999886443322 357899999999999999987 345678888999999999997422
Q ss_pred ---CCcC---CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 169 ---YTPI---TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 169 ---~~~~---~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
..+. ....+++++++||||.||++|+|+||+++ ++++++.+.+......++.+.+.|.++..+++. . +.
T Consensus 212 ~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~--~~ 286 (386)
T PRK09082 212 GAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVA-PAALSAEFRKVHQYNTFTVNTPAQLALADYLRA--E--PE 286 (386)
T ss_pred CCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhC-CHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC--C--hH
Confidence 1222 22357899999999999999999999999 899999999988777788999999999888762 2 38
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----h-HHHHHHHHhhCeeeeCC
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----D-EDCEKLLRAERIMARGG 316 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~l~~~gI~~~pg 316 (360)
++++.++.++++++++.+.|++. ++.+..+.+++ |+|+++++ . +.+..+++++||.+.||
T Consensus 287 ~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg 352 (386)
T PRK09082 287 HYLELPAFYQAKRDRFRAALANS-RFKLLPCEGTY-------------FQLVDYSAISDLDDVEFCQWLTREHGVAAIPL 352 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCeeE-------------EEEEeccccCCCCHHHHHHHHHHhCCEEEeCc
Confidence 89999999999999999999986 45555555555 77877652 2 44455678889999999
Q ss_pred CCCCC---CCCeEEEEecCChHHHHHHHHHHHH
Q 018172 317 RRFGA---DAKYARVSMLSREEIFNIFLERLSA 346 (360)
Q Consensus 317 ~~f~~---~~~~~R~s~~~~~e~~~~~~~~l~~ 346 (360)
+.|+. ..+++|++++.+++++++++++|++
T Consensus 353 ~~f~~~~~~~~~~Ri~~~~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 353 SVFYADPFPHRLVRLCFAKQEETLDAAAERLCQ 385 (386)
T ss_pred HHhCCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 98853 3579999998899999999999875
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=321.27 Aligned_cols=305 Identities=17% Similarity=0.216 Sum_probs=243.2
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~ 101 (360)
...|+++.|. ++||+++++++..+ |.+++++ +|++|+|+++++.+++..++. +||. |+++.|+|+.|.
T Consensus 161 ~~~Y~~s~G~-----~~lReaIA~~~~~r~g~~~~pe-~I~iT~Ga~~ai~~~~~~l~~~~gd~----Vli~~P~Y~~y~ 230 (534)
T PLN02231 161 TGAYSHSQGI-----KGLRDAIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSEKDG----ILCPIPQYPLYS 230 (534)
T ss_pred ccCcCCCCCc-----HHHHHHHHHHHHhccCCCCCcc-cEEEeCCHHHHHHHHHHHhccCCCCE----EEEeCCCChhHH
Confidence 4569999998 99999999998654 7777775 899999999999999999984 7998 999999999999
Q ss_pred HHHHHhCCeeeeecCCcc---cccc-------C------CCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEe
Q 018172 102 AETDYLRSGLYKWDGDAN---TFDK-------N------NGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHD 161 (360)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~---~~~~-------~------~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D 161 (360)
..++..|++++.++++.+ +++. + .++|+++++|||||||.++++ .+.++|++++++||+|
T Consensus 231 ~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 231 ASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred HHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 999999999999988743 2221 1 168999999999999999993 4567888899999999
Q ss_pred ecccCCCC------CcCC------C---CCCccEEEecccccc-CCCCceEEEEeec--CHHHHHHHHHHHhhccccCCh
Q 018172 162 LAYYWPQY------TPIT------G---AADHDIMLFTLSKCT-GHAGSRIGWALVK--DTEVARKMTRFIELGSIGVSK 223 (360)
Q Consensus 162 ~ay~~~~~------~~~~------~---~~~~~i~~~S~sK~~-~~~G~r~G~~~~~--~~~~~~~l~~~~~~~~~~~~~ 223 (360)
|+|.+..+ .++. + ...++++++||||.+ +++|+|+||+++. ++++++.+.+... ...+.+.
T Consensus 311 EvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~-~~~~s~~ 389 (534)
T PLN02231 311 EVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVAS-VNLCSNI 389 (534)
T ss_pred ccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHh-hhcCCCh
Confidence 99985322 1211 1 112589999999975 8999999999863 6889999987765 4567788
Q ss_pred HHHHHHHHHhcccC---CCchhH---HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC-
Q 018172 224 ESQLRAAKILGIVS---DDYPNF---FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES- 296 (360)
Q Consensus 224 ~~~~~~~~~l~~~~---~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 296 (360)
+.|.++..+++... ..++.+ .+++++.++++++.+.+.|++++++.+..|.|++ |+|+++
T Consensus 390 ~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~Ggf-------------ylw~~l~ 456 (534)
T PLN02231 390 SGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAM-------------YLFPRIH 456 (534)
T ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeee-------------EEecccc
Confidence 99999888886321 233343 4456899999999999999999888888888888 455332
Q ss_pred -Cc-------------h-HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 297 -KE-------------D-EDCEKLLRAERIMARGGRRFGA--DAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 297 -~~-------------~-~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
+. . ..+..+|+++||.++||+.|+. +..++|+++..++|++++++++|.+++++.-
T Consensus 457 lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~~~e~l~eal~RL~~~~~~~~ 529 (534)
T PLN02231 457 LPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVSRLTEFHKSFM 529 (534)
T ss_pred CcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 21 1 2346678888999999999985 3457999997799999999999999887653
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=313.15 Aligned_cols=299 Identities=18% Similarity=0.233 Sum_probs=241.5
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|+++.|. ++||++++++++.. |..+++ ++|++|+|+++++.+++..++++||+ |++++|+|..+...
T Consensus 64 ~~Y~~~~g~-----~~lr~~ia~~~~~~~g~~~~~-~~i~it~G~~~al~~~~~~~~~~gd~----Vl~~~p~y~~~~~~ 133 (398)
T PRK08363 64 NYYGPSEGL-----PELREAIVKREKRKNGVDITP-DDVRVTAAVTEALQLIFGALLDPGDE----ILIPGPSYPPYTGL 133 (398)
T ss_pred CCCCCCCCc-----HHHHHHHHHHHHHhcCCCCCh-hhEEEeCCHHHHHHHHHHHhCCCCCE----EEEcCCCCcchHHH
Confidence 458888887 99999999998754 666766 48999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeee-cCCcccccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC
Q 018172 104 TDYLRSGLYKW-DGDANTFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 104 ~~~~g~~~~~~-~~~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
++..|.+++.+ +.+.+++.. +++++++++++||||||.+++ +.+.++|+++++++|+|++|.+..+
T Consensus 134 ~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~ 213 (398)
T PRK08363 134 VKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTY 213 (398)
T ss_pred HHHcCCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhcc
Confidence 99999998887 454444322 257899999999999999998 3456778889999999999985221
Q ss_pred ----CcCC--CCCCccEEEeccccccCCCCceEEEEee-cCHHHHHHHHHHHhh---ccccCChHHHHHHHHHhcccCCC
Q 018172 170 ----TPIT--GAADHDIMLFTLSKCTGHAGSRIGWALV-KDTEVARKMTRFIEL---GSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 170 ----~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~-~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
.+.. ....++++++||||.|+++|+|+||+++ .++++++.+...... ...+.+.+.|.++..++.. .
T Consensus 214 ~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~- 290 (398)
T PRK08363 214 EGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG--P- 290 (398)
T ss_pred CCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhC--C-
Confidence 1111 2345799999999999999999999997 356777766544321 2367899999999998863 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----h-HHHHHHHHhhCeee
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----D-EDCEKLLRAERIMA 313 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~l~~~gI~~ 313 (360)
++++++.++.++++++.+.+.|++++++.+..|.+++ |+|+.++. . +.+.++|.++||.+
T Consensus 291 -~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~-------------~~~~~l~~~~~~~~~~~~~~~l~~~gV~v 356 (398)
T PRK08363 291 -MDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAF-------------YIFPRIEEGPWKDDKEFVLDVLHEAHVLF 356 (398)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCCeEE-------------EEEEEeccCCCCCHHHHHHHHHHhCCEEE
Confidence 3899999999999999999999988666665666665 66766542 3 56678889999999
Q ss_pred eCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 314 RGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 314 ~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
+||..|+. .++|+|++++.+++++++++++|++++.+
T Consensus 357 ~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 357 VHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFMRE 394 (398)
T ss_pred eCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 99999975 36799999977889999999999998865
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=309.79 Aligned_cols=288 Identities=20% Similarity=0.256 Sum_probs=237.9
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc-CCC-CCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV-DNA-VSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~-~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~ 101 (360)
..|+++.|. ++||++++++++.+ |.+ +.+ ++|++|+|+++++..++..+ +++||. |++++|+|+.+.
T Consensus 50 ~~Y~~~~G~-----~~lr~~ia~~~~~~~~~~~~~~-~~I~it~G~~~~i~~~~~~l~~~~gd~----Vl~~~p~y~~~~ 119 (357)
T TIGR03539 50 PGYPQTWGT-----PELREAIVDWLERRRGVPGLDP-TAVLPVIGTKELVAWLPTLLGLGPGDT----VVIPELAYPTYE 119 (357)
T ss_pred CCCCcccCC-----HHHHHHHHHHHHHhcCCCCCCc-CeEEEccChHHHHHHHHHHHcCCCCCE----EEECCCCcHHHH
Confidence 468888888 99999999998655 665 666 58999999999999998888 799998 999999999999
Q ss_pred HHHHHhCCeeeeecCCccccccCCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCC----Cc-C
Q 018172 102 AETDYLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQY----TP-I 172 (360)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~----~~-~ 172 (360)
..++..|++++.++ +.+.+. .+++++|++++||||||.+++. .+.++|+++|+++|+||+|.+..+ .. +
T Consensus 120 ~~~~~~g~~~~~v~-~~~~l~-~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~ 197 (357)
T TIGR03539 120 VGALLAGATPVAAD-DPTELD-PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSIL 197 (357)
T ss_pred HHHHhcCCEEeccC-ChhhcC-ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccce
Confidence 99999999998885 333333 2578999999999999999983 456778889999999999974211 11 1
Q ss_pred -----CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 173 -----TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 173 -----~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
....+++++++||||.|+++|+|+||+++ ++++++.+.+.+.....+.+.+.|.++.++++ + ..++.+.
T Consensus 198 ~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~--~~~~~~~ 271 (357)
T TIGR03539 198 DPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAG-DPALVAELLTVRKHAGLMVPAPVQAAMVAALG---D--DGHVAEQ 271 (357)
T ss_pred ecccCCCccccEEEEeccccccCCCceeEEEEec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHcC---C--HHHHHHH
Confidence 12346789999999999999999999998 89999999888776678899999999988886 3 2778889
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCC-CCCe
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGA-DAKY 325 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~-~~~~ 325 (360)
++.++++++.+.+.|++. ++.+..|.+++ |+|++++.. ..+.+.|.++||.+.||..|+. .+++
T Consensus 272 ~~~~~~~~~~~~~~L~~~-g~~~~~p~~~~-------------~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~ 337 (357)
T TIGR03539 272 KARYAARRAQLKPALEKA-GFRIDHSEAGL-------------YLWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQH 337 (357)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCCcCCCccE-------------EEEEECCCCHHHHHHHHHhCCEEECCccccCCCCCCe
Confidence 999999999999999987 45555565555 788887644 6677788899999999998864 3679
Q ss_pred EEEEecCChHHHHHHHHHH
Q 018172 326 ARVSMLSREEIFNIFLERL 344 (360)
Q Consensus 326 ~R~s~~~~~e~~~~~~~~l 344 (360)
+|+|++.++|++++++++|
T Consensus 338 iRis~~~~~~~i~~~~~~l 356 (357)
T TIGR03539 338 VRVALTATDERIAAAVARL 356 (357)
T ss_pred EEEEecCCHHHHHHHHHhh
Confidence 9999988889999999876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=308.98 Aligned_cols=284 Identities=15% Similarity=0.166 Sum_probs=222.2
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
..++|+++. ..+||++++++++. ++++|++|+|+++++..++. ++++| . |++++|+|+.+..
T Consensus 33 ~~~~Yp~~~------~~~lr~~ia~~~~~------~~~~I~it~Gs~~~l~~~~~-~~~~~-~----vv~~~P~y~~y~~ 94 (332)
T PRK06425 33 DISIYPEIS------YTDIEDQIKIYTQG------LKIKVLIGPGLTHFIYRLLS-YINVG-N----IIIVEPNFNEYKG 94 (332)
T ss_pred hcccCcCcC------HHHHHHHHHHHhCC------CcceEEECCCHHHHHHHHHH-HhCCC-c----EEEeCCChHHHHH
Confidence 446687655 39999999999997 66789999999999999987 56665 4 8888999999999
Q ss_pred HHHHhCCeeeeecCCcccccc----CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCCC---c
Q 018172 103 ETDYLRSGLYKWDGDANTFDK----NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQYT---P 171 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~~~~~----~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~~---~ 171 (360)
+++..|++++.++.+..+.+. ..+++++++++||||||.+++. .+.++|+++++++|+||+|.+.... +
T Consensus 95 ~~~~~G~~v~~vp~~~~~~~~~~l~~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~ 174 (332)
T PRK06425 95 YAFTHGIRISALPFNLINNNPEILNNYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEE 174 (332)
T ss_pred HHHHcCCeEEEEeCCcccCcHHHHhhcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchh
Confidence 999999999999876433321 2478999999999999999993 3456677799999999999854321 1
Q ss_pred ---CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHH
Q 018172 172 ---ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGR 248 (360)
Q Consensus 172 ---~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (360)
.....+++++++||||+|++||+|+||+++ ++++++.+.+.... .+.+.+.+.+ +.. ...+.++++.+
T Consensus 175 ~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~-~~~li~~l~~~~~~--~~~~~~~~~~----l~~--~~~~~~~~~~~ 245 (332)
T PRK06425 175 DVLLNRSYGNVIIGRSLTKILGIPSLRIGYIAT-DDYNMKISRKITEP--WSVCDPAIDF----IRS--IDLDYVAKHSL 245 (332)
T ss_pred HHHHhccCCCEEEEeecHHhcCCchhhheeeec-CHHHHHHHHHcCCC--CccCHHHHHH----HHH--hhhHHHHHHHH
Confidence 123457899999999999999999999999 89999999876432 3344343322 221 12236778899
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCC-CCCeEE
Q 018172 249 RLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGA-DAKYAR 327 (360)
Q Consensus 249 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~-~~~~~R 327 (360)
+.++++|+++.+.|++++ +....+ +.++|+|+++++...+.+.|.++||.++||..|+. +++|+|
T Consensus 246 ~~~~~~r~~l~~~L~~~g-~~~~~~-------------~~g~f~~~~~~~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iR 311 (332)
T PRK06425 246 DIMENERSYLINNLEAMG-FRAAGD-------------PSANFITFMIPDAHDFYSYLLKNGILVRLLDDYECLGEQYIR 311 (332)
T ss_pred HHHHHHHHHHHHHHHHCC-CEECCC-------------CCceEEEEEcCCHHHHHHHHHHCCeEEEECCCCCCCCCCEEE
Confidence 999999999999999884 433222 33458899987656677777789999999999954 467999
Q ss_pred EEecCChHHHHHHHHHHHHHH
Q 018172 328 VSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 328 ~s~~~~~e~~~~~~~~l~~~~ 348 (360)
||+ .+++++++++++|++++
T Consensus 312 is~-~~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 312 IAI-RRRSFNIKLVNALRNFL 331 (332)
T ss_pred EEe-CCHHHHHHHHHHHHHHh
Confidence 999 56778899999999876
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=309.64 Aligned_cols=298 Identities=20% Similarity=0.267 Sum_probs=242.4
Q ss_pred ccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. ++||+++++++. .+|.+.+++++|++|+|+++++..++..++++||+ |+++.|+|..+..+
T Consensus 55 ~~Y~~~~g~-----~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~----vli~~p~y~~~~~~ 125 (387)
T PRK07777 55 NQYPPGPGI-----PELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDE----VLLIEPYYDSYAAV 125 (387)
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCE----EEEeCCCchhhHHH
Confidence 569988888 999999999865 45777766557999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCccc----ccc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC
Q 018172 104 TDYLRSGLYKWDGDANT----FDK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~----~~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
++..|.+++.++.+.++ ++. ++++++|++++||||||.+++ +.+.++|+++++++|+||+|.+..
T Consensus 126 ~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~ 205 (387)
T PRK07777 126 IAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLV 205 (387)
T ss_pred HHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcc
Confidence 99999999988876542 221 357899999999999999997 245677888999999999997422
Q ss_pred C-----CcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCc
Q 018172 169 Y-----TPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 169 ~-----~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
+ .++. +..++++++.||||.||++|+|+||+++ ++++++.+.........+.+.+.|.++..++.. .
T Consensus 206 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~-- 280 (387)
T PRK07777 206 FDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACG-PAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDH--E-- 280 (387)
T ss_pred cCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEec-CHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhC--C--
Confidence 1 1222 2356899999999999999999999998 899999998877666777888899888887763 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-----ch-HHHHHHHHhhCeeee
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-----ED-EDCEKLLRAERIMAR 314 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~~gI~~~ 314 (360)
+.++++.++.++++++.+.+.|+++ ++.+..+.+++ |+|++++ +. +.+..+++++||.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~ 346 (387)
T PRK07777 281 DAWVAALRDSLQAKRDRLAAGLAEA-GFEVHDSAGTY-------------FLCADPRPLGYDDGTEFCRALPERVGVAAI 346 (387)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhC-CCCccCCCcce-------------EEEecccccCCCCHHHHHHHHHHhCCEEEe
Confidence 2889999999999999999999987 45555555555 6776653 23 444555567899999
Q ss_pred CCCCCCC----CCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 315 GGRRFGA----DAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 315 pg~~f~~----~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
||..|+. .++++|++++.+++++++++++|.+++.+
T Consensus 347 pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~~~ 386 (387)
T PRK07777 347 PMSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRALRGR 386 (387)
T ss_pred CchHhCCCCcCCCCeEEEEecCCHHHHHHHHHHHHHHhcC
Confidence 9998863 24689999988999999999999988754
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=311.33 Aligned_cols=300 Identities=21% Similarity=0.272 Sum_probs=244.2
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|++..|. +++|++++++++.++..++++ +|++|+|++++++.++..++++||+ |++++|+|..+..++
T Consensus 60 ~~Y~~~~g~-----~~lr~~ia~~~~~~~~~~~~~-~i~~t~G~~~al~~~~~~l~~~gd~----Vl~~~p~y~~~~~~~ 129 (397)
T PRK07568 60 LAYSHSQGI-----PELREAFAKYYKKWGIDVEPD-EILITNGGSEAILFAMMAICDPGDE----ILVPEPFYANYNGFA 129 (397)
T ss_pred cCcCCCCCC-----HHHHHHHHHHHHHhCCCCCcc-eEEEcCChHHHHHHHHHHhcCCCCE----EEEecCCCccHHHHH
Confidence 458888888 999999999988777777664 8999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCCc-ccccc----------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC-
Q 018172 105 DYLRSGLYKWDGDA-NTFDK----------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ- 168 (360)
Q Consensus 105 ~~~g~~~~~~~~~~-~~~~~----------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~- 168 (360)
+..|++++.++.+. +++.. ++++++|++++||||||.+++ +.+.++|+++++++|+|++|.+..
T Consensus 130 ~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~ 209 (397)
T PRK07568 130 TSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVY 209 (397)
T ss_pred HHcCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhccc
Confidence 99999999998752 33321 367899999999999999997 345677888999999999998432
Q ss_pred ----CCcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCch
Q 018172 169 ----YTPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 169 ----~~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
..+.. ...++++++.||||.|+++|+|+||++++++++++.+.+... ...+.+.+.|.++..+++. . +
T Consensus 210 ~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~--~--~ 284 (397)
T PRK07568 210 DGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQ-ARLSPPTLEQIGAAALLDT--P--E 284 (397)
T ss_pred CCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhhC--C--H
Confidence 12222 235789999999999999999999999855788888766554 2468889999999998873 2 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHH-Hh-----hCeee
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLL-RA-----ERIMA 313 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l-~~-----~gI~~ 313 (360)
.++++.++.++++++.+.+.|++++++.+..|.|++ |+|++++. ...+.+.| ++ +||.+
T Consensus 285 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~-------------~~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v 351 (397)
T PRK07568 285 SYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAF-------------YIIAKLPVDDAEDFAKWLLTDFNYNGETVMV 351 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcce-------------EEEEecCCCCHHHHHHHHHhhcccccceEEE
Confidence 889999999999999999999988666666666554 67888864 24444444 32 69999
Q ss_pred eCCCCCCC----CCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 314 RGGRRFGA----DAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 314 ~pg~~f~~----~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
.||..|+. .++++|++++.+++++++++++|.+++++.+
T Consensus 352 ~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~~~l~~~l~~~~ 394 (397)
T PRK07568 352 APASGFYATPGLGKNEIRIAYVLNEEDLKRAMEILKEALEKYN 394 (397)
T ss_pred eCchHhcCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 99998842 3579999998788999999999999998755
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=303.48 Aligned_cols=289 Identities=21% Similarity=0.289 Sum_probs=241.4
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~ 101 (360)
..++|+++. . .+|+++++++++ . ++++|++++|+++.|..++..++.+||+ |+++.|+|..|.
T Consensus 50 ~~~rYPd~~-~-----~~l~~a~a~~~~~~------~~~~V~~gnGsde~i~~l~~~~~~~gd~----vl~~~Ptf~~Y~ 113 (356)
T COG0079 50 KLNRYPDPD-Y-----RELRAALAEYYGVV------DPENVLVGNGSDELIELLVRAFVEPGDT----VLIPEPTFSMYE 113 (356)
T ss_pred hhccCCCCc-H-----HHHHHHHHHHhCCC------CcceEEEcCChHHHHHHHHHHhhcCCCE----EEEcCCChHHHH
Confidence 356788774 3 999999999999 5 6679999999999999999999999998 999999999999
Q ss_pred HHHHHhCCeeeeecCCc-----ccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhh--cCcEEEEeecccCCCCCc
Q 018172 102 AETDYLRSGLYKWDGDA-----NTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRS--AEGKLIHDLAYYWPQYTP 171 (360)
Q Consensus 102 ~~~~~~g~~~~~~~~~~-----~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~--~~~~li~D~ay~~~~~~~ 171 (360)
..++..|++++.++.+. +.+.. ++++++|+++|||||||..++ +++.++.+. .+.++|+||||.+....+
T Consensus 114 ~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~ 193 (356)
T COG0079 114 IAAQLAGAEVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSPES 193 (356)
T ss_pred HHHHhcCCeEEEecccccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCch
Confidence 99999999999998765 22221 247999999999999999998 445544442 389999999999754322
Q ss_pred CC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHH
Q 018172 172 IT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGR 248 (360)
Q Consensus 172 ~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (360)
.. ...++++++.||||+||++|+|+||+++ ++++++.+.+.+. .++.|.+++.++.++++ ++ +++++.+
T Consensus 194 ~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia-~~~~i~~l~~vr~--p~~v~~~a~~aa~aal~---~~--~~~~~~~ 265 (356)
T COG0079 194 SLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIA-NPELIAALNKVRP--PFNVSSPALAAAIAALR---DA--DYLEESV 265 (356)
T ss_pred hhhhccCCCCEEEEEecHHhhhcchhceeeccC-CHHHHHHHHHhcC--CCCCCHHHHHHHHHHcc---cH--HHHHHHH
Confidence 22 3577799999999999999999999998 9999999999985 67889999999999887 44 8999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch--HHHHHHHHhhCeeeeCCCCCCCCCCeE
Q 018172 249 RLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED--EDCEKLLRAERIMARGGRRFGADAKYA 326 (360)
Q Consensus 249 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~gI~~~pg~~f~~~~~~~ 326 (360)
+.+++.|+++.+.|++++ +.-.. ++.+||+++++++. ..+.+.|.++||.+|.....+..++|+
T Consensus 266 ~~~~~~r~rl~~~l~~~~-~~~v~-------------pS~aNFvlv~~~~~~~~~l~~~L~~~giivR~~~~~~~~~~~l 331 (356)
T COG0079 266 ERIREERERLYAALKALG-LFGVF-------------PSQANFVLVRVPDAEAAALAEALLKKGILVRDCSSVGLLPGYL 331 (356)
T ss_pred HHHHHHHHHHHHHHHhCC-CCeec-------------CCCCcEEEEECCCccHHHHHHHHHHCCEEEEeCCCCCCCCCeE
Confidence 999999999999999996 33122 25578999999863 578999999999999975544457799
Q ss_pred EEEecCChHHHHHHHHHHHHHHhc
Q 018172 327 RVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 327 R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
|+++ .++|+.++++++|.+++..
T Consensus 332 Ritv-gt~een~~ll~AL~~~~~~ 354 (356)
T COG0079 332 RITV-GTPEENDRLLAALREVLKG 354 (356)
T ss_pred EEEe-CCHHHHHHHHHHHHHHHhc
Confidence 9998 6666669999999998865
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=310.82 Aligned_cols=293 Identities=22% Similarity=0.238 Sum_probs=224.9
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|.+..|. ++||+++++++...+ + ++++|++|+|+++++..++ .++.+||+ |++++|+|..+..++
T Consensus 69 ~~Y~p~~g~-----~~lr~aia~~~~~~~--~-~~d~I~it~Ga~~al~~l~-~l~~~gd~----Vlv~~P~y~~~~~~~ 135 (402)
T TIGR03542 69 RGYGPEQGY-----PFLREAIAENDYRGR--I-DPEEIFISDGAKCDVFRLQ-SLFGSDNT----VAVQDPVYPAYVDSN 135 (402)
T ss_pred cCCCCCCCC-----HHHHHHHHHHHHhcC--C-CHHHEEECCCcHHHHHHHH-HhcCCCCE----EEEeCCCCcchHHHH
Confidence 458778887 999999999853222 3 4469999999999999864 56688998 999999999999999
Q ss_pred HHhCC-----------eeeeecCCc-ccccc----CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecc
Q 018172 105 DYLRS-----------GLYKWDGDA-NTFDK----NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAY 164 (360)
Q Consensus 105 ~~~g~-----------~~~~~~~~~-~~~~~----~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay 164 (360)
+..|+ +++.++.+. +++.. ..++++|++++||||||.+++ +.+.++|+++++++|+||+|
T Consensus 136 ~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y 215 (402)
T TIGR03542 136 VMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAY 215 (402)
T ss_pred HHcCCccccccccccceEEEeecchhhCCCCCccccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchh
Confidence 99999 988888764 34433 257899999999999999999 34567788899999999999
Q ss_pred cCCCC-----CcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHH--------HHHHHHHhhccccCChHHHHH
Q 018172 165 YWPQY-----TPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVA--------RKMTRFIELGSIGVSKESQLR 228 (360)
Q Consensus 165 ~~~~~-----~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~ 228 (360)
.+... .++. ...+++++++||||.||+||+|+||+++ +++++ +.+.........+.+.+.|.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~ 294 (402)
T TIGR03542 216 SAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVV-PKELTYADGHSVIQDWERRQCTKFNGASYPVQRA 294 (402)
T ss_pred hhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEe-cHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHH
Confidence 85221 1221 2245789999999999999999999999 77776 222222222334688899998
Q ss_pred HHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch----HHHHH
Q 018172 229 AAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED----EDCEK 304 (360)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 304 (360)
+..++.. .. ..++.+.++.++++++.+.+.|+.++ +.+..+.+ ++|+|++++.. +....
T Consensus 295 ~~~~l~~--~~-~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~-------------~~f~~v~l~~~~~~~~l~~~ 357 (402)
T TIGR03542 295 AEAAYAG--EG-LQPILEAISYYMENARILRKALEAAG-FKVYGGEH-------------APYLWVKTPEGISSWDFFDF 357 (402)
T ss_pred HHHHHcC--cc-hhHHHHHHHHHHHHHHHHHHHHHhcC-ceecCCCc-------------eeEEEEECCCCCCHHHHHHH
Confidence 8887762 22 24567778899999999999999873 44433333 34899998752 34445
Q ss_pred HHHhhCeeeeCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 305 LLRAERIMARGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 305 ~l~~~gI~~~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
+++++||.++||+.|+. ..+|+||+++.+++++++++++|++.+
T Consensus 358 l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~ 402 (402)
T TIGR03542 358 LLYQYHVVGTPGSGFGPSGEGFVRFSAFGKRENIVEACERIKEAL 402 (402)
T ss_pred HHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHhhC
Confidence 55577999999999975 368999998779999999999998753
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=319.38 Aligned_cols=312 Identities=14% Similarity=0.152 Sum_probs=232.4
Q ss_pred cccCCCCccccccHHHHHHHHH-HHhhc-CCCCCC--CCcEEEcCChHHHHHHHHHh-----hcCCCCCCCceEEEeCCC
Q 018172 26 YLSDMGNVCWFLVPELAEAINN-LHHVV-DNAVSD--GRHIVIGTGSTQLYQAALYA-----LSSPGGPEPISVVSAAPY 96 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~-~~~~~-~~~~~~--~~~i~~t~G~t~~l~~~~~~-----l~~~gd~~~~~vl~~~p~ 96 (360)
.|+++.|. +++|+++++ ++... +....+ +++|++|+|+++++..++.+ ++++||+ |++++|+
T Consensus 129 ~Y~~~~g~-----~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~----Vlv~~P~ 199 (527)
T PRK09275 129 NYPVPDRM-----LKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDK----IALMTPI 199 (527)
T ss_pred CCCCCCCC-----HHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCE----EEEeCCC
Confidence 59999998 999999998 44432 222222 34899999999999999886 6899999 9999999
Q ss_pred CCCcHHHHHHhCC--eeeeecCCc-ccccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhh--hcCcEE
Q 018172 97 YSQYPAETDYLRS--GLYKWDGDA-NTFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNR--SAEGKL 158 (360)
Q Consensus 97 ~~~~~~~~~~~g~--~~~~~~~~~-~~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~--~~~~~l 158 (360)
|+.|..+++..|+ +++.++.+. +++.. ++++|+|++++||||||.++++ .+.++|+ +++++|
T Consensus 200 y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~I 279 (527)
T PRK09275 200 FTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMI 279 (527)
T ss_pred hHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEE
Confidence 9999999888754 445555432 23332 4689999999999999999993 3455674 359999
Q ss_pred EEeecccCCC--CCcCC-CCCCccEEEeccccccCCCCceEEEEeecCHH----HHHHH---------------------
Q 018172 159 IHDLAYYWPQ--YTPIT-GAADHDIMLFTLSKCTGHAGSRIGWALVKDTE----VARKM--------------------- 210 (360)
Q Consensus 159 i~D~ay~~~~--~~~~~-~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~----~~~~l--------------------- 210 (360)
|+||+|.+.. +.++. ...++++++.||||.|+++|||+||+++++++ +++.+
T Consensus 280 I~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~ 359 (527)
T PRK09275 280 ITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEK 359 (527)
T ss_pred EECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcch
Confidence 9999998532 22222 23578999999999999999999999994432 32222
Q ss_pred -----------HHHHhhccccCChHHHHHHH-----HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q 018172 211 -----------TRFIELGSIGVSKESQLRAA-----KILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYP 274 (360)
Q Consensus 211 -----------~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 274 (360)
+++....+.+.+.+.|.+++ ++++ . .+.+.+++++.+++|++.+.+.|. . .+....|.
T Consensus 360 ~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~---~-~~~~~~~~~~~~~~Rr~~l~~~Lg-~-~~~~~~p~ 433 (527)
T PRK09275 360 LKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLD---E-EDAYKKAMKDIIRRRYKALYEGLG-L-PEPEDPNN 433 (527)
T ss_pred hhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHh---C-chHHHHHHHHHHHHHHHHHHHHcC-C-CCcCCCCC
Confidence 45566677889999999733 3344 2 238899999999999999999883 2 22334678
Q ss_pred CcccccccccCCCC---C--CcccccC-Cch-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHH
Q 018172 275 LEYCNFTGKFTNSH---P--GFAWLES-KED-EDCEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSA 346 (360)
Q Consensus 275 ~~~~~~~~~~~~~~---~--~~~~~~~-~~~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~ 346 (360)
|++|.|.+...... + ..-|+.- .++ +++.+++.++||.+.||..||...+++|+|++. ++++++++.++|.+
T Consensus 434 g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a~~~~~~~~~~~~rl~~ 513 (527)
T PRK09275 434 AAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGGPEWSVRVSLANLNEEDYAKIGKAIRK 513 (527)
T ss_pred eeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhCCCCCeEEEEEecCCHHHHHHHHHHHHH
Confidence 88877765432110 1 1112211 123 778899999999999999998767899999985 88999999999999
Q ss_pred HHhchh
Q 018172 347 IQGGSI 352 (360)
Q Consensus 347 ~~~~~~ 352 (360)
++.+..
T Consensus 514 ~l~~y~ 519 (527)
T PRK09275 514 LLDEYY 519 (527)
T ss_pred HHHHHH
Confidence 997654
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=307.81 Aligned_cols=288 Identities=20% Similarity=0.191 Sum_probs=230.5
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCC-CCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPG-GPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~g-d~~~~~vl~~~p~~~~~~~~ 103 (360)
.+|+++. . ++||++++++++. ++++|++|+|+++++++++..++++| +. |++++|+|..+...
T Consensus 54 ~~Y~~~~-~-----~~lr~~ia~~~~~------~~~~I~~t~G~~~~l~~~~~~~~~~g~~~----vlv~~p~y~~~~~~ 117 (364)
T PRK04781 54 RRYPDPQ-P-----PGLRSALAALYGC------APEQLLIGRGSDEAIDLLVRALCVPGRDA----VLVTPPVFGMYAVC 117 (364)
T ss_pred ccCCCCC-H-----HHHHHHHHHHhCc------ChHHEEEeCCHHHHHHHHHHHhcCCCCCe----EEEcCCChHHHHHH
Confidence 4466544 3 8999999999975 55799999999999999999999888 67 99999999999998
Q ss_pred HHHhCCeeeeecCC--cccccc----------CCCeeEEEEcCCCCCCcccchH-HHH---HHhhhcCcEEEEeecccCC
Q 018172 104 TDYLRSGLYKWDGD--ANTFDK----------NNGAYIEVVNSPNNPDGTIREA-VLA---KVNRSAEGKLIHDLAYYWP 167 (360)
Q Consensus 104 ~~~~g~~~~~~~~~--~~~~~~----------~~~~~~i~~~~p~NPtG~~~~~-~~~---~~~~~~~~~li~D~ay~~~ 167 (360)
++..|++++.++++ .+++.. ++++++|++++||||||.+++. .+. +.++ +++++|+||+|.+.
T Consensus 118 ~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f 196 (364)
T PRK04781 118 ARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEF 196 (364)
T ss_pred HHHcCCEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhh
Confidence 89999999999874 233321 3578999999999999999993 333 3344 58899999999854
Q ss_pred CCC----cCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 168 QYT----PITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 168 ~~~----~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
... ...+..+++++++||||+||++|+|+||+++ ++++++.+.+.+. .++.+.++|.++..++. +....+
T Consensus 197 ~~~~~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~-~~~l~~~l~~~~~--~~~~~~~~~~~a~~~l~---~~~~~~ 270 (364)
T PRK04781 197 SDVPSAVGLLARYDNLAVLRTLSKAHALAAARIGSLIA-NAELIAVLRRCQA--PYPVPTPCAALAEQALS---APALAV 270 (364)
T ss_pred cCCcchHHHHhhCCCEEEEecChhhcccccceeeeeeC-CHHHHHHHHhccC--CCCCCHHHHHHHHHHHh---cccHHH
Confidence 321 2234567899999999999999999999998 8999999998764 46788899998888776 322245
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADA 323 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~ 323 (360)
..+..+.++++|+.+.+.|+.++++....| +.++|+|+++++.+.+.+.|.++||.++||..|+..+
T Consensus 271 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p-------------~~g~f~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~ 337 (364)
T PRK04781 271 TARRVAEVRAERERLHAALAQLPGVRRVYP-------------SQGNFLLVRFDDAEAAFQALLAAGVVVRDQRAAPRLS 337 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCeECC-------------CCCcEEEEEcCCHHHHHHHHHHCCeEEeeCCCCCCCC
Confidence 666667889999999999998865432223 4455899999876778888999999999998775457
Q ss_pred CeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 324 KYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 324 ~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
+|+||++ ..++++++++++|+++..
T Consensus 338 ~~~Ris~-~~~~~~~~l~~al~~~~~ 362 (364)
T PRK04781 338 DALRITL-GTPEQNDRVLAALQRTQA 362 (364)
T ss_pred CeEEEeC-CCHHHHHHHHHHHHHHHh
Confidence 8999998 567888999999988653
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=307.29 Aligned_cols=294 Identities=21% Similarity=0.255 Sum_probs=241.0
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. ++||++++++++.. |..+++ ++|++|+|+++++..++..++++||+ |++++|+|..+..+
T Consensus 61 ~~Y~~~~G~-----~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~----Vlv~~p~y~~~~~~ 130 (386)
T PRK07550 61 HLYGPVEGL-----PELREAYAAHYSRLYGAAISP-EQVHITSGCNQAFWAAMVTLAGAGDE----VILPLPWYFNHKMW 130 (386)
T ss_pred cCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCc-ceEEEecCcHHHHHHHHHHhcCCCCE----EEEcCCCCcchHHH
Confidence 458888887 99999999998744 666665 58999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCc-ccccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC
Q 018172 104 TDYLRSGLYKWDGDA-NTFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~-~~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
++..|++++.++.+. +++.. +.+++++++++||||||.+++ +.+.++|+++++++|+|++|.+...
T Consensus 131 ~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~ 210 (386)
T PRK07550 131 LDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDS 210 (386)
T ss_pred HHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhcc
Confidence 999999999999874 34432 357899999999999999998 3466788889999999999984211
Q ss_pred -----CcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCch
Q 018172 170 -----TPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 170 -----~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
.+.. +..++++++.||||.||++|+|+||+++ ++++++.+.........+.+.+.|.++..+++. ++
T Consensus 211 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~----~~ 285 (386)
T PRK07550 211 GGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVA-SPARIAEIEKFMDTVAICAPRIGQIAVAWGLPN----LA 285 (386)
T ss_pred CCCCCcchhhCCCccccEEEEecchhhccCcccceEeeec-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc----HH
Confidence 1121 2246789999999999999999999999 889999998888777788899999999998873 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHH-HHHHhhCeeeeCC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCE-KLLRAERIMARGG 316 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~l~~~gI~~~pg 316 (360)
.++++.++.++++++.+.+.|..++++.+ .+.++ +|+|++++. ...+. .+++++||.++||
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~g~-------------~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg 351 (386)
T PRK07550 286 DWRAGNRAEIARRRDAFRAVFARLPGWEL-LASGA-------------YFAYVRHPFPDRPSREVARRLAKEAGILCLPG 351 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcee-CCCce-------------EEEEecCCCCCCCHHHHHHHHHHhcCEEEeCc
Confidence 88999999999999999999998744332 23333 378888764 24444 4567789999999
Q ss_pred CCCCC-CCCeEEEEecC-ChHHHHHHHHHHHHH
Q 018172 317 RRFGA-DAKYARVSMLS-REEIFNIFLERLSAI 347 (360)
Q Consensus 317 ~~f~~-~~~~~R~s~~~-~~e~~~~~~~~l~~~ 347 (360)
..|+. .++++|++++. +++++++++++|.++
T Consensus 352 ~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 352 TMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred hhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 99974 36799999986 899999999999876
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=313.03 Aligned_cols=302 Identities=18% Similarity=0.192 Sum_probs=233.5
Q ss_pred cccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcC-----CCCCCCceEEE-eCCC
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSS-----PGGPEPISVVS-AAPY 96 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~-----~gd~~~~~vl~-~~p~ 96 (360)
...|+++.|. ++||+++++++. .+|..+++ ++|++|+|+++++.+++..+++ +||. |++ ++|+
T Consensus 67 ~~~Y~~~~G~-----~~LR~aia~~~~~~~g~~v~~-~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~----v~i~~~P~ 136 (416)
T PRK09440 67 LGNYDGPQGK-----DELIEALAALLNERYGWNISP-QNIALTNGSQSAFFYLFNLFAGRRADGSLKK----ILFPLAPE 136 (416)
T ss_pred cccCCCCCCC-----HHHHHHHHHHHHHHhCCCCCh-hhEEEccChHHHHHHHHHHHhccccCCCCCe----EEEecCCC
Confidence 3579999998 999999999985 45777766 4899999999999999999985 4776 999 6999
Q ss_pred CCCcHHHHHHhC------Ceeeeec-------CCccccccCCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEE
Q 018172 97 YSQYPAETDYLR------SGLYKWD-------GDANTFDKNNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLI 159 (360)
Q Consensus 97 ~~~~~~~~~~~g------~~~~~~~-------~~~~~~~~~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li 159 (360)
|+.|...+...| ..+..++ +|.+.++.+++++++++++||||||.+++. .+.++|+++++++|
T Consensus 137 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI 216 (416)
T PRK09440 137 YIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLHIDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLL 216 (416)
T ss_pred chhhHHHhhccCceeecccccccccccccccCCCHHHcccCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEE
Confidence 999988665433 2222221 233333334578999999999999999993 45567888999999
Q ss_pred EeecccCCC--C--CcC-CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhc
Q 018172 160 HDLAYYWPQ--Y--TPI-TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILG 234 (360)
Q Consensus 160 ~D~ay~~~~--~--~~~-~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 234 (360)
+||+|.... . ... ....+++++++||||+ ++||+|+||+++ ++++++.+.........+.+.+.|.++.++++
T Consensus 217 ~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRiG~~i~-~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~ 294 (416)
T PRK09440 217 IDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKL-GLPGVRCGIVIA-DEEIIEALSNMNGIISLAPGRLGPAIAAEMIE 294 (416)
T ss_pred EeCCccccCCCcchhhcCccccCCeEEEeccccc-CCCcceEEEEeC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHhc
Confidence 999997421 1 111 1125789999999995 889999999998 89999999988877778899999999999887
Q ss_pred ccCCCchhHHHH-HHHHHHHHHHHHHHHHHhc-CC--cccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHH
Q 018172 235 IVSDDYPNFFEY-GRRLMSERWNMLRQVIRQS-GV--FGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLL 306 (360)
Q Consensus 235 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l 306 (360)
. ..+..+..+ .++.++++++.+.+.|.++ +. +.+..|.|++ |+|++++. ...+.+.|
T Consensus 295 ~--~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~-------------fiw~~~~~~~~~~~~~~~~l 359 (416)
T PRK09440 295 S--GDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAI-------------FLWLWFKDLPITTEELYQRL 359 (416)
T ss_pred c--chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCce-------------EEEEECCCCCCCHHHHHHHH
Confidence 2 334455544 6888999999999999765 22 2333455544 88988864 25666778
Q ss_pred HhhCeeeeCCCCCCCC--------CCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 307 RAERIMARGGRRFGAD--------AKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 307 ~~~gI~~~pg~~f~~~--------~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
.++||.++||+.|+.. .+++|||++.+++++++++++|++++.+.+
T Consensus 360 ~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~~~~~~~~ 413 (416)
T PRK09440 360 KARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAEEVEKAY 413 (416)
T ss_pred HHCCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 8899999999988431 359999997789999999999999987643
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=306.37 Aligned_cols=298 Identities=18% Similarity=0.284 Sum_probs=238.0
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. +++|++++++++.. +..+.+ ++|++|+|+++++.+++.+++++||+ |++++|+|..+...
T Consensus 67 ~~Y~~~~g~-----~~lr~~ia~~l~~~~~~~~~~-~~ii~t~G~t~al~~~~~~l~~~gd~----Vlv~~p~y~~~~~~ 136 (403)
T TIGR01265 67 NGYAPSVGA-----LAAREAVAEYLSSDLPGKLTA-DDVVLTSGCSQAIEICIEALANPGAN----ILVPRPGFPLYDTR 136 (403)
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHhhcCCCCCH-HHEEEecChHHHHHHHHHHhCCCCCE----EEEeCCCchhHHHH
Confidence 468778887 99999999999853 555555 58999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-c--ccc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC
Q 018172 104 TDYLRSGLYKWDGDAN-T--FDK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~--~~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
++..|++++.++++.+ + ++. +++++++++++||||||.+++ +.+.++|+++|+++|+|++|.+..+
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 216 (403)
T TIGR01265 137 AAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVF 216 (403)
T ss_pred HHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccc
Confidence 9999999998876432 2 221 357899999999999999997 3566778889999999999985322
Q ss_pred -----CcCCC--CCCccEEEeccccccCCCCceEEEEeecCH-H-----HHHHHHHHHhhccccCChHHHHHHHHHhccc
Q 018172 170 -----TPITG--AADHDIMLFTLSKCTGHAGSRIGWALVKDT-E-----VARKMTRFIELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 170 -----~~~~~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~-~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
.++.. ...++++++||||+|++||+|+||++++++ + +++.+..... ...+++.+.|.++..+++.
T Consensus 217 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~- 294 (403)
T TIGR01265 217 GDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQ-RILGPATIVQGALPDILEN- 294 (403)
T ss_pred CCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHHh-
Confidence 22222 234689999999999999999999998433 2 4444544432 2457889999999998863
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--------ch-HHHHHHHH
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------ED-EDCEKLLR 307 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~l~ 307 (360)
..+.++++.++.++++++.+.+.|+.++++.+..|.+++ |+|++++ +. +.+..+++
T Consensus 295 --~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~-------------f~~~~~~~~~~~~~~~~~~~~~~l~~ 359 (403)
T TIGR01265 295 --TPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAM-------------YLMVKLELELFPEIKDDVDFCEKLVR 359 (403)
T ss_pred --ChHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcee-------------EEEEeccccccCCCCCHHHHHHHHHH
Confidence 224899999999999999999999988666555565555 7888775 23 44455577
Q ss_pred hhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 308 AERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 308 ~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
++||.+.||..|+. ++++|++++.+++.+++++++|.+++++
T Consensus 360 ~~gv~v~pg~~f~~-~~~iRis~~~~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 360 EESVICLPGSAFGL-PNWVRITITVPESMLEEACSRIKEFCER 401 (403)
T ss_pred hCCEEEeCccccCC-CCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 88999999999984 7899999988889999999999999865
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=307.13 Aligned_cols=301 Identities=18% Similarity=0.185 Sum_probs=234.4
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCC-CCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDN-AVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~-~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|+++.|. ++||++++++++.++. .+++ ++|++|+|+++++..++..++++||+ |++++|+|..+...
T Consensus 66 ~~Y~~~~G~-----~~lr~~ia~~~~~~~~~~~~~-~~i~~t~G~~~~l~~~~~~~~~~gd~----Vlv~~p~y~~~~~~ 135 (404)
T PRK09265 66 QGYSDSKGL-----FSARKAIMQYYQQKGIPDVDV-DDIYIGNGVSELIVMAMQALLNNGDE----VLVPAPDYPLWTAA 135 (404)
T ss_pred CCCCCCCCc-----HHHHHHHHHHHhccCCCCCCc-ccEEEeCChHHHHHHHHHHhCCCCCE----EEEeCCCCcChHHH
Confidence 569999998 9999999999876655 4555 58999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC-
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ- 168 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~- 168 (360)
++..|.+++.++.+.+ ++.. ++++++|++++||||||.+++ +.+.++|+++++++|+||+|.+..
T Consensus 136 ~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 215 (404)
T PRK09265 136 VSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILY 215 (404)
T ss_pred HHHcCCEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccC
Confidence 9999999988876532 3222 357899999999999999998 245567888999999999998532
Q ss_pred ----CCcCCC--CCCccEEEeccccccCCCCceEEEEeec-CHH----HHHHHHHHHhhccccCChHHHHHHHHHhcccC
Q 018172 169 ----YTPITG--AADHDIMLFTLSKCTGHAGSRIGWALVK-DTE----VARKMTRFIELGSIGVSKESQLRAAKILGIVS 237 (360)
Q Consensus 169 ----~~~~~~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~-~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (360)
..++.. ...++++++||||+|++||+|+||++++ ++. +++.+... .....+.|.++|.++.++|...
T Consensus 216 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~- 293 (404)
T PRK09265 216 DGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGY- 293 (404)
T ss_pred CCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCc-
Confidence 122221 2336889999999999999999999962 443 34444332 2245678899999999988621
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-------h-HHHHHHHHhh
Q 018172 238 DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-------D-EDCEKLLRAE 309 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~l~~~ 309 (360)
+.. ..+.+.++.++++++.+.+.|++++++.+..|.+++ |+|++++. . +.+.+++.++
T Consensus 294 ~~~-~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~-------------~l~~~~~~~~~~~~~~~~~~~~~l~~~ 359 (404)
T PRK09265 294 QSI-NELILPGGRLYEQRDRAWELLNAIPGVSCVKPKGAL-------------YAFPKLDPKVYPIHDDEQFVLDLLLQE 359 (404)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcce-------------EEEEEecccccCCCCHHHHHHHHHHhC
Confidence 111 122222356788899999999988666666666665 77877642 3 5688899999
Q ss_pred CeeeeCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 310 RIMARGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 310 gI~~~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
||.+.||..|+. .++++|++++.++|++++++++|.++++..
T Consensus 360 gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~l~rl~~~l~~~ 402 (404)
T PRK09265 360 KVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGRFLSGY 402 (404)
T ss_pred CEEEECchhhCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999964 468999999779999999999999988753
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=304.13 Aligned_cols=285 Identities=18% Similarity=0.263 Sum_probs=231.1
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..+|++. +. ++||++++++++. ++++|++|+|+++++..++..+ .+ ++ |++++|+|+.+...
T Consensus 48 ~~~Y~~~-~~-----~~lr~~ia~~~~~------~~~~i~it~Ga~~~l~~~~~~~-~~-~~----v~i~~P~y~~~~~~ 109 (354)
T PRK06358 48 LVEYPDP-DY-----LELRKRIASFEQL------DLENVILGNGATELIFNIVKVT-KP-KK----VLILAPTFAEYERA 109 (354)
T ss_pred hhcCCCc-cH-----HHHHHHHHHHhCC------ChhhEEECCCHHHHHHHHHHHh-CC-Cc----EEEecCChHHHHHH
Confidence 3457654 45 9999999999975 5579999999999999999886 43 55 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc--------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCCC
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK--------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQYT 170 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~--------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~~ 170 (360)
++..|++++.++.+.+ ++.. ..+++++++++||||||.+++. ++.++|+++++++|+||+|.+..+.
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~ 189 (354)
T PRK06358 110 LKAFDAEIEYAELTEETNFAANEIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEE 189 (354)
T ss_pred HHHcCCeeEEEeCccccCCCccHHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCC
Confidence 9999999999987643 3222 2468999999999999999983 4556787899999999999853221
Q ss_pred ----c---CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 171 ----P---ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 171 ----~---~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
+ ..+..+++++++||||+||++|+|+||++++++.+++.+.+.+. .++.+.+.|.++..+++ +. .+
T Consensus 190 ~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~---~~--~~ 262 (354)
T PRK06358 190 NETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMRE--PWSINTFADLAGQTLLD---DK--EY 262 (354)
T ss_pred ccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCC--CCcchHHHHHHHHHHhc---cH--HH
Confidence 1 12345789999999999999999999999856788888887764 46788999999999886 32 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCC-C
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGA-D 322 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~-~ 322 (360)
+++.++.++++++.+.+.|++++++.+..+ .++|+|+++++...+.+.|.++||.++||..|+. +
T Consensus 263 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~--------------~g~f~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~ 328 (354)
T PRK06358 263 IKKTIQWIKEEKDFLYNGLSEFKGIKVYKP--------------SVNFIFFKLEKPIDLRKELLKKGILIRSCSNYRGLD 328 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEcCC--------------cceEEEEEcCchHHHHHHHHHCCeEEEECCCCCCCC
Confidence 899999999999999999998865444333 3348899998776666777789999999999954 5
Q ss_pred CCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 323 AKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 323 ~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
++++||++ .++++.++++++|++++
T Consensus 329 ~~~iRls~-~~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 329 ENYYRVAV-KSREDNKKLLKALEVIL 353 (354)
T ss_pred CCEEEEEe-CCHHHHHHHHHHHHHHh
Confidence 68999998 77778899999999876
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=296.07 Aligned_cols=342 Identities=57% Similarity=1.011 Sum_probs=268.6
Q ss_pred CchHHHHHHhcCCceeeecCCcccccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc
Q 018172 1 MAFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS 80 (360)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~ 80 (360)
+||++||++..+.+...+++|+.|.++.+..+. |+..++|++.|.++++.-|..++....|++++|+||.++.++.+|.
T Consensus 9 ~~~E~yW~~~~~~~avvi~gw~rMSY~~~~~~~-~f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALS 87 (363)
T PF04864_consen 9 TFFEPYWRRHGDSSAVVIPGWHRMSYFSDSSNG-WFISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALS 87 (363)
T ss_dssp GGGHHHHCCTHHHH-EEE-TTTT-SSSS-TTSS-TTS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHC
T ss_pred hhhHHHHHhcCcceeEEEeccccceeEEecCCc-eeccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcC
Confidence 589999999999999999999999887755544 8899999999999999999999999999999999999999999996
Q ss_pred CC--CCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCcccccc--CCCeeEEEEcCCCCCCcccchHHHHHHhhhcCc
Q 018172 81 SP--GGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFDK--NNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEG 156 (360)
Q Consensus 81 ~~--gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~ 156 (360)
.. ....+.+|+...|.|+.|..+.+.+.-....|.-|...+.. ++.+-+-++++||||.|..-...+ +..+.
T Consensus 88 p~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~Gda~~~~~~~~~~~~IElVTSPNNPDG~lr~~V~----~g~~~ 163 (363)
T PF04864_consen 88 PNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWAGDASNFKNSDNPSPYIELVTSPNNPDGQLREAVL----NGSSG 163 (363)
T ss_dssp HHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEEEECCCGTT-S-CCGEEEEEESS-TTT------SS----TTTEE
T ss_pred CCCCCCCCCceeEecCCCccchHHHHHhccccCccccccHHhhccCCCCCCeEEEEeCCCCCcccccchhc----CCCCc
Confidence 54 44457789999999999999999888777888888777743 245667799999999998755544 43677
Q ss_pred EEEEeecccCCCCCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhccc
Q 018172 157 KLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 157 ~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
.+|.|-||.+|++.++....+.+|.++|+||.-|.+|-|+||.+.+|+++.+.+..+....+.+++.-+|..++.+|+.+
T Consensus 164 k~I~D~AYYWPhyTpI~~~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v 243 (363)
T PF04864_consen 164 KVIHDLAYYWPHYTPITAPADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVV 243 (363)
T ss_dssp EEEEE-TT-STTTS---S-B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHH
T ss_pred ceeeeeeeecccccccCCCCCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred CCCch------hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch--HHHHHHHHh
Q 018172 237 SDDYP------NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED--EDCEKLLRA 308 (360)
Q Consensus 237 ~~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 308 (360)
.+.+. ...+-.++.+++|.+.|.+.+.+-..+.+++....+|.|......+.+.|.|++|+.. ++|...|++
T Consensus 244 ~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~DC~~~l~~ 323 (363)
T PF04864_consen 244 LDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDEDCYAVLRE 323 (363)
T ss_dssp HHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCGGSSHHHHHHC
T ss_pred HhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcccccHHHHHHh
Confidence 54321 4788899999999999999999988899999999999999988888889999999854 799999999
Q ss_pred hCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHH
Q 018172 309 ERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAI 347 (360)
Q Consensus 309 ~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~ 347 (360)
.||..+.|..||.+..|+|+|+-.++++++.++++|..+
T Consensus 324 ~~I~tr~G~~fga~~ryVRlSml~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 324 AKIITRSGVLFGADSRYVRLSMLKRDDDFDQLLERLSKL 362 (363)
T ss_dssp TTEEEEEGGGGTS-TTEEEEESSS-HHHHHHHHHHHHCC
T ss_pred CCcccCCCCccCCCCCeEEEeccCCHHHHHHHHHHHHhh
Confidence 999999999999999999999988999999999999865
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=304.12 Aligned_cols=297 Identities=23% Similarity=0.288 Sum_probs=245.6
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. ++||++++++++.. |..+++ ++|++|+|+++++..++..++++||. |++++|+|..+..+
T Consensus 62 ~~Y~~~~g~-----~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~~~~~gd~----vl~~~p~y~~~~~~ 131 (393)
T PRK05764 62 TKYTPAAGI-----PELREAIAAKLKRDNGLDYDP-SQVIVTTGAKQALYNAFMALLDPGDE----VIIPAPYWVSYPEM 131 (393)
T ss_pred CCcCCCCCh-----HHHHHHHHHHHHHHhCCCCCH-HHEEEeCCcHHHHHHHHHHhcCCCCE----EEecCCCCcchHHH
Confidence 358888887 99999999998644 545555 58999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
++..|.+++.++.+.+ ++.. +++++++++++||||||.+++ +.+.++|+++++++|+|++|.+..+
T Consensus 132 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~ 211 (393)
T PRK05764 132 VKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVY 211 (393)
T ss_pred HHHcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceee
Confidence 9999999999987632 3321 357899999999999999987 3556778889999999999985321
Q ss_pred -----CcC----CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCc
Q 018172 170 -----TPI----TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 170 -----~~~----~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
.+. .+..+++++++||||.++++|+|+||+++ ++++++.+.........+.+.+.|.++..+++. .
T Consensus 212 ~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~-- 286 (393)
T PRK05764 212 DGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAG-PKELIKAMSKLQSHSTSNPTSIAQYAAVAALNG--P-- 286 (393)
T ss_pred CCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEec-CHHHHHHHHHHHhhcccCCChHHHHHHHHHHcC--C--
Confidence 122 23456899999999999999999999998 899999998887766778999999999988862 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--------h-HHHHHHHHhhCe
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--------D-EDCEKLLRAERI 311 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~l~~~gI 311 (360)
+.++++.++.++++++.+.+.|++++++.+..|.+++ |+|++++. . +....+++++||
T Consensus 287 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 353 (393)
T PRK05764 287 QDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAF-------------YVFPNVSKLLGKSITDSLEFAEALLEEAGV 353 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcce-------------EEEEecccccccccCCHHHHHHHHHHhCCE
Confidence 3889999999999999999999998666666665555 66776653 1 334455677899
Q ss_pred eeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 312 MARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 312 ~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
.++||..|+. ++++|+|++.+++++++++++|.+++.+
T Consensus 354 ~v~~g~~f~~-~~~vRis~~~~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 354 AVVPGIAFGA-PGYVRLSYATSLEDLEEGLERIERFLES 391 (393)
T ss_pred EEccccccCC-CCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 9999999976 7899999988999999999999999865
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=299.48 Aligned_cols=286 Identities=16% Similarity=0.167 Sum_probs=232.2
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
...|++..|. ++||++++++++. ++++|++|+|+++++.+++. +++++ ++++.|+|..+...
T Consensus 51 ~~~Y~~~~g~-----~~lr~aia~~~~~------~~~~I~it~Ga~~al~~~~~--l~~~~-----viv~~P~y~~~~~~ 112 (349)
T PRK07908 51 LAAYPSTEDE-----RRARAAVAARHGR------TPDEVLLLAGAAEGFALLAR--LRPRR-----AAVVHPSFTEPEAA 112 (349)
T ss_pred hhcCCCccch-----HHHHHHHHHHhCc------ChhhEEECCCHHHHHHHHHh--cCCCe-----EEEeCCCChHHHHH
Confidence 3458888887 9999999999875 56799999999999999888 45643 77889999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCC---CCCcCC-C
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWP---QYTPIT-G 174 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~---~~~~~~-~ 174 (360)
++..|++++.++++.+ +++. ++++++++++|||||||.+++ +++.++++ ++.++|+||+|.+. ...++. .
T Consensus 113 ~~~~G~~i~~v~~~~~~~~d~~~l~~~~~~i~l~np~NPTG~~~~~~~l~~l~~-~~~~iIvDe~y~~~~~~~~~~l~~~ 191 (349)
T PRK07908 113 LRAAGIPVHRVVLDPPFRLDPAAVPDDADLVVIGNPTNPTSVLHPAEQLLALRR-PGRILVVDEAFADAVPGEPESLAGD 191 (349)
T ss_pred HHHcCCEEEeeccCcccCcChhHhccCCCEEEEcCCCCCCCCCcCHHHHHHHHh-cCCEEEEECcchhhccCCccccccc
Confidence 9999999999988753 3332 357899999999999999999 56677887 68899999999742 222222 2
Q ss_pred CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHH
Q 018172 175 AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSER 254 (360)
Q Consensus 175 ~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 254 (360)
..+++++++||||.|+++|+|+||+++ ++++++.+.+.... ++.+.+.|.++.+++. +....++++.++.++++
T Consensus 192 ~~~~~i~i~S~SK~~~l~GlRiG~~~~-~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~ 265 (349)
T PRK07908 192 DLPGVLVLRSLTKTWSLAGLRVGYALG-APDVLARLTRGRAH--WPVGTLQLEAIAACCA---PRAVAEAAADAARLAAD 265 (349)
T ss_pred cCCCEEEEeecccccCCccceeeeeec-CHHHHHHHHhcCCC--CCccHHHHHHHHHHhc---ccchHHHHHHHHHHHHH
Confidence 346789999999999999999999998 89999998876543 5566777777666655 22247889999999999
Q ss_pred HHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCC-CCCeEEEEecCC
Q 018172 255 WNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGA-DAKYARVSMLSR 333 (360)
Q Consensus 255 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~-~~~~~R~s~~~~ 333 (360)
++++.+.|+++ ++.+..|.++ +|+|+++++.+.+.+.|+++||.++||..|+. .++++|+|+ .+
T Consensus 266 r~~l~~~L~~~-~~~~~~p~~g-------------~~~~~~~~~~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~-~~ 330 (349)
T PRK07908 266 RAEMVAGLRAV-GARVVDPAAA-------------PFVLVRVPDAELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV-RP 330 (349)
T ss_pred HHHHHHHHHhC-CcEeccCCCc-------------eEEEEECCcHHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe-CC
Confidence 99999999988 5565555444 48999998777888899999999999999854 478999999 57
Q ss_pred hHHHHHHHHHHHHHHh
Q 018172 334 EEIFNIFLERLSAIQG 349 (360)
Q Consensus 334 ~e~~~~~~~~l~~~~~ 349 (360)
++++++++++|++++.
T Consensus 331 ~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 331 RAEVPVLVQALAEILK 346 (349)
T ss_pred CccHHHHHHHHHHHHh
Confidence 7888999999998865
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=305.42 Aligned_cols=279 Identities=21% Similarity=0.264 Sum_probs=229.2
Q ss_pred cccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHH
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETD 105 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~ 105 (360)
+|+ ..|. ++||++++++++. ++++|++|+|+++++++++..++++||+ |++++|+|+.+...++
T Consensus 60 ~Yp-~~g~-----~~Lr~aia~~~~~------~~~~I~vt~Gs~e~i~~~~~~l~~~gd~----vlv~~P~y~~~~~~~~ 123 (366)
T PRK01533 60 LYP-DGGA-----TTLRQTIANKLHV------KMEQVLCGSGLDEVIQIISRAVLKAGDN----IVTAGATFPQYRHHAI 123 (366)
T ss_pred cCC-CCCH-----HHHHHHHHHHhCC------CcceEEECCCHHHHHHHHHHHhcCCCCE----EEEcCCcHHHHHHHHH
Confidence 454 4565 9999999999975 5679999999999999999999999998 9999999999999999
Q ss_pred HhCCeeeeecCCcccccc-------CCCeeEEEEcCCCCCCcccchH-H---HHHHhhhcCcEEEEeecccCCCC-----
Q 018172 106 YLRSGLYKWDGDANTFDK-------NNGAYIEVVNSPNNPDGTIREA-V---LAKVNRSAEGKLIHDLAYYWPQY----- 169 (360)
Q Consensus 106 ~~g~~~~~~~~~~~~~~~-------~~~~~~i~~~~p~NPtG~~~~~-~---~~~~~~~~~~~li~D~ay~~~~~----- 169 (360)
..|++++.++.+.++++. +++++++++++||||||.+++. . +.++|+++ .++|+||+|.+...
T Consensus 124 ~~g~~v~~v~~~~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~-~~~iiDe~y~~~~~~~~~~ 202 (366)
T PRK01533 124 IEGCEVKEVALNNGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISEN-TLIVIDEAYYEYVTAKDFP 202 (366)
T ss_pred HcCCEEEEeecCCCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCC-CEEEEEccHHHhhccccCc
Confidence 999999999876444432 3578999999999999999993 3 33455544 46788999974211
Q ss_pred C--cCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 170 T--PITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 170 ~--~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
. +.....+++++++||||+||++|+|+||+++ ++++++.+.+.+. .++.|.++|.++.++|+ +. .+.++.
T Consensus 203 ~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~-~~~~~~~l~~~~~--~~~~~~~~q~aa~~~l~---~~--~~~~~~ 274 (366)
T PRK01533 203 ETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVG-HEELIEKLNVVRL--PFNVSSLAQKAATIAFG---DD--EFIEEI 274 (366)
T ss_pred chhHHhccCCCEEEEeCchHHhcChHHHHhHHhC-CHHHHHHHHHhcC--CCCcCHHHHHHHHHHhC---CH--HHHHHH
Confidence 1 1223467899999999999999999999998 8999999988763 57899999999999886 33 888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEE
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYAR 327 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R 327 (360)
++.++++++++.+.++.++ +.+. .+.++|+|+++++...+.+.|.++||.+++ | ++++|
T Consensus 275 ~~~~~~~r~~~~~~l~~~g-~~~~--------------~~~~nf~~~~~~~~~~~~~~l~~~GI~Vr~---~---~~~iR 333 (366)
T PRK01533 275 VRVNTEGLRQYESFCKENE-IPFY--------------QSQTNFIFLPVENGGEIYEACAHAGFIIRP---F---PNGVR 333 (366)
T ss_pred HHHHHHHHHHHHHHHHhCC-CccC--------------CCcCcEEEEeCCCHHHHHHHHHHCCcEEcc---C---CCceE
Confidence 9999999999999998873 3322 245669999997667788888899999998 3 46899
Q ss_pred EEecCChHHHHHHHHHHHHHHhch
Q 018172 328 VSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 328 ~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
|++ .+++++++++++|+++++.+
T Consensus 334 is~-~~~~~~~~l~~al~~~~~~~ 356 (366)
T PRK01533 334 ITV-GTREQNEGVISVLQQHFENK 356 (366)
T ss_pred EeC-CCHHHHHHHHHHHHHHHHhc
Confidence 998 77888999999999998654
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=308.17 Aligned_cols=314 Identities=13% Similarity=0.134 Sum_probs=225.5
Q ss_pred cccCCCCccccccHHHHHHHH-HHHhhc-CCCCCCCC--cEEEcCChHHHHHHHHHh-----hcCCCCCCCceEEEeCCC
Q 018172 26 YLSDMGNVCWFLVPELAEAIN-NLHHVV-DNAVSDGR--HIVIGTGSTQLYQAALYA-----LSSPGGPEPISVVSAAPY 96 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la-~~~~~~-~~~~~~~~--~i~~t~G~t~~l~~~~~~-----l~~~gd~~~~~vl~~~p~ 96 (360)
.|+++.|. .++|++++ +|++.. +....+++ +|++|+|+++++..++.+ ++++||+ |+++.|+
T Consensus 123 ~Y~~p~g~-----~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~----Vlv~~P~ 193 (521)
T TIGR03801 123 NYPVPDRM-----LPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDK----IALMTPI 193 (521)
T ss_pred CCCCCCCC-----HHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCE----EEEeCCC
Confidence 58777776 77777777 576654 33333444 899999999999999887 7899998 9999999
Q ss_pred CCCcHHHHHHh--CCeeeeecCCcc-c-----ccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhc-
Q 018172 97 YSQYPAETDYL--RSGLYKWDGDAN-T-----FDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSA- 154 (360)
Q Consensus 97 ~~~~~~~~~~~--g~~~~~~~~~~~-~-----~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~- 154 (360)
|+.|..+++.. |.+++.++.+.+ + +.. ++++|+++++|||||||.++++ .+.++|+++
T Consensus 194 y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~ 273 (521)
T TIGR03801 194 FTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDR 273 (521)
T ss_pred cHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 99999998886 667776665421 1 322 4689999999999999999993 345667765
Q ss_pred -CcEEEEeecccCCC--CCcCC-CCCCccEEEeccccccCCCCceEEEEeecCHHHHH------------HH--------
Q 018172 155 -EGKLIHDLAYYWPQ--YTPIT-GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVAR------------KM-------- 210 (360)
Q Consensus 155 -~~~li~D~ay~~~~--~~~~~-~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~------------~l-------- 210 (360)
+++||+||+|.+.. +.++. ...++++++.||||.|+++|||+||+++++..+.+ .+
T Consensus 274 ~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~ 353 (521)
T TIGR03801 274 PDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLT 353 (521)
T ss_pred CCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhcccc
Confidence 99999999998532 22322 23568999999999999999999999994332221 11
Q ss_pred ----------------HHHHhhccccCChHHHHHHH--HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCC
Q 018172 211 ----------------TRFIELGSIGVSKESQLRAA--KILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPE 272 (360)
Q Consensus 211 ----------------~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 272 (360)
+++....+.+.+.+.|.+++ +++..+.. .+.+.+++++.+++|++.+.+.| ... +....
T Consensus 354 ~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~-~~~y~~~~~~~~~~R~~~l~~~L-g~~-~~~~~ 430 (521)
T TIGR03801 354 TEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDK-ENAYKAETKDICRRREKLLFRGL-GLP-LQEDP 430 (521)
T ss_pred CChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHhc-CCC-CcCCC
Confidence 34445556778888887322 22222212 24899999999999999999998 221 22345
Q ss_pred CCCcccccccccCCCC---C-Cc-cccc--CCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHH
Q 018172 273 YPLEYCNFTGKFTNSH---P-GF-AWLE--SKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERL 344 (360)
Q Consensus 273 ~~~~~~~~~~~~~~~~---~-~~-~~~~--~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l 344 (360)
+.|++|.|.+...... + -| -|+. ..+.+++.+++.++||.+.||..|+...+++|+|++. ++++++++.++|
T Consensus 431 ~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla~l~~~~~~~~~~rl 510 (521)
T TIGR03801 431 NDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLANLNEYDYAEIGRAI 510 (521)
T ss_pred CCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEecCCCHHHHHHHHHHH
Confidence 6777766554321110 0 00 0110 1122788889999999999999998767789999985 899999999999
Q ss_pred HHHHhch
Q 018172 345 SAIQGGS 351 (360)
Q Consensus 345 ~~~~~~~ 351 (360)
++++++.
T Consensus 511 ~~~~~~~ 517 (521)
T TIGR03801 511 RKILDEY 517 (521)
T ss_pred HHHHHHH
Confidence 9999764
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=301.30 Aligned_cols=280 Identities=19% Similarity=0.244 Sum_probs=227.2
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|++ .|. ++||++++++++. .+++|++|+|+++++++++..++++||. |++++|+|..+...+
T Consensus 60 ~~Y~~-~~~-----~~lr~~ia~~~~~------~~~~I~it~G~~~al~~~~~~~~~~gd~----V~v~~P~y~~~~~~~ 123 (357)
T PRK14809 60 HSYPK-ASH-----ADLTAALADRWDV------SPEQVWLANGGDGALDYLARAMLDPGDT----VLVPDPGFAYYGMSA 123 (357)
T ss_pred hcCCC-CCH-----HHHHHHHHHHhCC------CcceEEECCCHHHHHHHHHHHhcCCCCE----EEEeCCChHHHHHHH
Confidence 45764 455 9999999999874 5569999999999999999999999998 999999999998888
Q ss_pred HHhCCeeeeecCCc-cccccC--------CCeeEEEEcCCCCCCcccchH-HHHH---HhhhcCcEEEEeecccCCCCC-
Q 018172 105 DYLRSGLYKWDGDA-NTFDKN--------NGAYIEVVNSPNNPDGTIREA-VLAK---VNRSAEGKLIHDLAYYWPQYT- 170 (360)
Q Consensus 105 ~~~g~~~~~~~~~~-~~~~~~--------~~~~~i~~~~p~NPtG~~~~~-~~~~---~~~~~~~~li~D~ay~~~~~~- 170 (360)
...|.+++.++++. +++..+ +++++|++++||||||.++++ .+.+ +++ ++.++|+||+|.+....
T Consensus 124 ~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~-~~~~iI~De~y~~~~~~~ 202 (357)
T PRK14809 124 RYHHGEVREYPVSKADDFEQTADTVLDAYDGERIVYLTSPHNPTGSEIPLDEVEALAERTD-EETLVVVDEAYGEFAERP 202 (357)
T ss_pred HHcCCeEEEEecccCcCCCcCHHHHHHhhcCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCc-cCcEEEEechhhhccCCc
Confidence 88999999888753 344321 368999999999999999993 3333 444 47899999999853221
Q ss_pred ---cCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 171 ---PITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 171 ---~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
......+++++++||||.|+++|+|+||+++ ++++++.+.+.. ..++.+.++|.++.+++. + +.++++.
T Consensus 203 ~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~---~--~~~~~~~ 274 (357)
T PRK14809 203 SAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVV-PEEWADAYARVN--TPFAASELACRAGLAALD---D--DEHVERT 274 (357)
T ss_pred hhHHHHhhCCCEEEEecchhHhcCcchhheeeec-CHHHHHHHHHhC--CCCCCCHHHHHHHHHHhC---C--HHHHHHH
Confidence 1123457899999999999999999999999 889999998765 356788899999988776 3 3889999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEE
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYAR 327 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R 327 (360)
++.++++++.+.+.|.... . + +.++|+|+++++.+.+.+.|.++||.++||..|+. ++++|
T Consensus 275 ~~~~~~~r~~l~~~L~~~~---~--~-------------~~g~f~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~-~~~iR 335 (357)
T PRK14809 275 VETARWAREYIREELDAPT---W--E-------------SAGNFVLAEVGDASAVAEAAQERGVIVRDCTSFGL-PECIR 335 (357)
T ss_pred HHHHHHHHHHHHHHhcCcc---C--C-------------CCCCEEEEECCCHHHHHHHHHHCCEEEEECccCCC-CCeEE
Confidence 9999999999999986531 1 2 33458899887666666778899999999999985 67999
Q ss_pred EEecCChHHHHHHHHHHHHHHh
Q 018172 328 VSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 328 ~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
++++ +++++++++++|+++++
T Consensus 336 ls~~-~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 336 ITCG-TREETERAVEVLNEVLA 356 (357)
T ss_pred EecC-CHHHHHHHHHHHHHHhc
Confidence 9985 57899999999999875
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=300.33 Aligned_cols=285 Identities=20% Similarity=0.195 Sum_probs=224.2
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
...|+++. . ++||++++++++. ++++|++|+|+++++.+++..+. +||+ |++++|+|..+...
T Consensus 51 ~~~Y~~~~-~-----~~Lr~aia~~~~v------~~~~I~it~G~~~~i~~~~~~l~-~g~~----vlv~~P~y~~~~~~ 113 (360)
T PRK07392 51 LRHYPDPD-Y-----RELRLALAQHHQL------PPEWILPGNGAAELLTWAGRELA-QLRA----VYLITPAFGDYRRA 113 (360)
T ss_pred hhcCCCcC-H-----HHHHHHHHHHhCc------ChhhEEECCCHHHHHHHHHHHhC-CCCe----EEEECCCcHHHHHH
Confidence 34577654 4 8999999999964 55699999999999999998875 5777 99999999999999
Q ss_pred HHHhCCeeeeecCCccc-c-------cc----CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-
Q 018172 104 TDYLRSGLYKWDGDANT-F-------DK----NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY- 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~-~-------~~----~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~- 169 (360)
++..|++++.++++.++ + .. ..++++++++|||||||.+++ +++.++++++++ +|+||+|.+...
T Consensus 114 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~ 192 (360)
T PRK07392 114 LRAFGATVKELPLPLDQPSPGLTLRLQTLPPQLTPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPP 192 (360)
T ss_pred HHHcCCeEEEEecccccCCcccccCHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccC
Confidence 99999999999987432 2 11 246789999999999999999 567778887774 667999985321
Q ss_pred ---Cc---CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 170 ---TP---ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 170 ---~~---~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
.+ .....+++++++||||+|+++|+|+||+++ ++++++.+.+.+ ..++.+.++|.++.++++ +. .+
T Consensus 193 ~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~-~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~---~~--~~ 264 (360)
T PRK07392 193 DAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIA-HPDRLQRWQQWR--DPWPVNGLAAAAAIAALA---DR--DF 264 (360)
T ss_pred ccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeC-CHHHHHHHHhhC--CCCCCCHHHHHHHHHHhc---cH--HH
Confidence 12 123456899999999999999999999999 888988887655 346789999999999887 32 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-H-HHHHHHHhhCeeeeCCCCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-E-DCEKLLRAERIMARGGRRFGA 321 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~gI~~~pg~~f~~ 321 (360)
.+..++.++++++.+.+.|++++++.+. + +.++|+|++++.. . ....+++++||.++||..|+.
T Consensus 265 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~-------------~~~~fl~~~~~~~~~~l~~~ll~~~gv~v~pg~~f~~ 330 (360)
T PRK07392 265 QQQTWAWLPPAREALFQGLASLPGLTPL-P-------------SAANFLLVQSQGSALQLQEKLLQQHRILIRDCLSFPE 330 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEC-C-------------CCCCEEEEEcCCCHHHHHHHHHhhCCEEEEeCCCCCC
Confidence 7778888999999999999987655432 2 2345889888643 4 444556788999999999975
Q ss_pred -CCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 322 -DAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 322 -~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
.++|+||+++. +++.+++.+++.+++.
T Consensus 331 ~~~~~iRi~~~~-~~~~~~l~~al~~~~~ 358 (360)
T PRK07392 331 LGDRYFRVAVRT-EAENQRLLEALAAILA 358 (360)
T ss_pred CCCCEEEEEeCC-HHHHHHHHHHHHHHhh
Confidence 46799999955 4445677777776654
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=300.20 Aligned_cols=281 Identities=22% Similarity=0.264 Sum_probs=229.0
Q ss_pred ccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY 106 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~ 106 (360)
|.+..|. +++|++++++++. .+++|++|+|+++++..++..++++||+ |++++|+|+.+...+..
T Consensus 60 ~~p~~g~-----~~lr~~ia~~~~~------~~~~i~~t~G~~~~l~~~~~~~~~~gd~----v~~~~p~y~~~~~~~~~ 124 (359)
T PRK03158 60 LYPDGYA-----PELRTKVAKHLGV------DEEQLLFGAGLDEVIQMISRALLNPGTN----TVMAEPTFSQYRHNAII 124 (359)
T ss_pred cCCCCcH-----HHHHHHHHHHhCC------CHHHEEECCCHHHHHHHHHHHHhCCCCE----EEEcCCCHHHHHHHHHH
Confidence 4444566 9999999999975 4569999999999999999999999998 99999999999999999
Q ss_pred hCCeeeeecCCcccccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhh--cCcEEEEeecccCCCC----Cc-
Q 018172 107 LRSGLYKWDGDANTFDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRS--AEGKLIHDLAYYWPQY----TP- 171 (360)
Q Consensus 107 ~g~~~~~~~~~~~~~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~--~~~~li~D~ay~~~~~----~~- 171 (360)
.|++++.++.+..+++. +++++++++++||||||.+++ +++.++++. +++++|+||+|.+..+ ++
T Consensus 125 ~g~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 204 (359)
T PRK03158 125 EGAEVREVPLKDGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDT 204 (359)
T ss_pred cCCeEEEEecCCCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccH
Confidence 99999999876333321 367899999999999999999 445555443 6999999999974221 11
Q ss_pred --CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHH
Q 018172 172 --ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRR 249 (360)
Q Consensus 172 --~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (360)
..+..+++++++||||+||++|+|+||+++ ++++++.+.+... .++.|.++|.++.++++ +. .++++.++
T Consensus 205 ~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~-~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~---~~--~~~~~~~~ 276 (359)
T PRK03158 205 LPLLEKYENLIVLRTFSKAYGLAALRVGYGIA-SEELIEKLNIARP--PFNTTRIAQYAAIAALE---DQ--AFLKECVE 276 (359)
T ss_pred HHHHHhcCCEEEEEechHhhcCcchhhehhcC-CHHHHHHHHHhcC--CCCCCHHHHHHHHHHhc---CH--HHHHHHHH
Confidence 123457899999999999999999999998 8999999987764 46789999999999886 32 78888889
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-hHHHHHHHHhhCeeeeCCCCCCCCCCeEEE
Q 018172 250 LMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-DEDCEKLLRAERIMARGGRRFGADAKYARV 328 (360)
Q Consensus 250 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~ 328 (360)
.++++++.+.+.|+++ ++.+. + +.++|+|++++. ...+.+.|.++||.++||..|+. ++++||
T Consensus 277 ~~~~~~~~~~~~l~~~-~~~~~-~-------------~~g~~i~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~-~~~iRi 340 (359)
T PRK03158 277 KNAEGLEQYYAFCKEY-GLFYY-P-------------SQTNFIFVDTGRDANELFEALLKKGYIVRSGAALGF-PTGVRI 340 (359)
T ss_pred HHHHHHHHHHHHHHHC-CCeeC-C-------------CcCcEEEEECCCCHHHHHHHHHHCCeEEeeCCCCCC-CCeEEE
Confidence 9999999999999887 33332 2 234488888863 36666777789999999999974 789999
Q ss_pred EecCChHHHHHHHHHHHHH
Q 018172 329 SMLSREEIFNIFLERLSAI 347 (360)
Q Consensus 329 s~~~~~e~~~~~~~~l~~~ 347 (360)
++ .+++++++++++|+++
T Consensus 341 ~~-~~~~~~~~l~~al~~~ 358 (359)
T PRK03158 341 TI-GLKEQNDKIIELLKEL 358 (359)
T ss_pred ec-CCHHHHHHHHHHHHHh
Confidence 98 4788899999999886
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=303.47 Aligned_cols=292 Identities=15% Similarity=0.130 Sum_probs=223.6
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcC-CCCCCCCcEE--EcCChHHHHHHHHH---hhcCCCCCCCceEEEeCCCC
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVD-NAVSDGRHIV--IGTGSTQLYQAALY---ALSSPGGPEPISVVSAAPYY 97 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~-~~~~~~~~i~--~t~G~t~~l~~~~~---~l~~~gd~~~~~vl~~~p~~ 97 (360)
...|+++.|. ++||+++++++...+ ..+++ ++|+ .|.|+++++..++. .++++||+ |++++|+|
T Consensus 65 ~~~Y~~~~G~-----~~lR~aia~~~~~~~~~~~~~-~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~----Vlv~~P~y 134 (404)
T PTZ00376 65 DKEYLPIEGL-----QSFIEAAQKLLFGEASYALAE-KRIATVQALSGTGALRLGFEFLKRFLPAGTT----VYVSNPTW 134 (404)
T ss_pred CCCCCCCCCC-----HHHHHHHHHHhcCCCcccccc-CeEEEeeccCcchHHHHHHHHHHHhcCCCCE----EEEcCCCc
Confidence 4679999998 999999999875433 34455 4788 59999999988865 66899998 99999999
Q ss_pred CCcHHHHHHhCCeeeeecCCc---ccccc----------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEE
Q 018172 98 SQYPAETDYLRSGLYKWDGDA---NTFDK----------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIH 160 (360)
Q Consensus 98 ~~~~~~~~~~g~~~~~~~~~~---~~~~~----------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~ 160 (360)
+.+..+++..|++++.+++.. .+++. .++++++++++||||||.++++ .+.++|+++++++|+
T Consensus 135 ~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 214 (404)
T PTZ00376 135 PNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFF 214 (404)
T ss_pred hhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 999999999999999998732 22221 1346778889999999999993 455678889999999
Q ss_pred eecccCCCCCc-------C---CCCCCccEEEeccccccCCCCceEEEE---eecCHHHHHHH----HHHHhhccccCCh
Q 018172 161 DLAYYWPQYTP-------I---TGAADHDIMLFTLSKCTGHAGSRIGWA---LVKDTEVARKM----TRFIELGSIGVSK 223 (360)
Q Consensus 161 D~ay~~~~~~~-------~---~~~~~~~i~~~S~sK~~~~~G~r~G~~---~~~~~~~~~~l----~~~~~~~~~~~~~ 223 (360)
||+|.+..+.. . ....+++++++||||+|+++|+|+||+ ++ ++++++.+ .+.......+.+.
T Consensus 215 De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ 293 (404)
T PTZ00376 215 DMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCA-NKEEAANVLSQLKLIIRPMYSSPPI 293 (404)
T ss_pred ehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeC-CHHHHHHHHHHHHHHHhhhcCCCch
Confidence 99998533211 1 123458999999999999999999998 45 77755544 3333333345678
Q ss_pred HHHHHHHHHhcccC--CCchhHHHHHHHHHHHHHHHHHHHHHhcCC---cccCCCCCcccccccccCCCCCCcccccCCc
Q 018172 224 ESQLRAAKILGIVS--DDYPNFFEYGRRLMSERWNMLRQVIRQSGV---FGLPEYPLEYCNFTGKFTNSHPGFAWLESKE 298 (360)
Q Consensus 224 ~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (360)
++|.++..+++... +.+.+++.+.+++++++++.+.+.|++++. +.+..|.|++ |+|++++.
T Consensus 294 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~-------------f~~~~~~~ 360 (404)
T PTZ00376 294 HGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGM-------------FSFTGLTK 360 (404)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceE-------------EEecCCCH
Confidence 99999999887210 111244667788999999999999998841 2334455555 88988854
Q ss_pred hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec-CChHHHHHHHHHHHHHHh
Q 018172 299 DEDCEKLLRAERIMARGGRRFGADAKYARVSML-SREEIFNIFLERLSAIQG 349 (360)
Q Consensus 299 ~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~-~~~e~~~~~~~~l~~~~~ 349 (360)
+++..+++++||.+.|| + |++++ .+++++++++++|+++++
T Consensus 361 -~~~~~L~~~~~v~v~p~-------~--Ris~~~~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 361 -EQVERLIEKYHIYLLDN-------G--RISVAGLTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred -HHHHHHHHhCCEeecCC-------C--eEEEeccCHHhHHHHHHHHHHHHh
Confidence 67777777779999996 1 99997 499999999999999875
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=296.47 Aligned_cols=284 Identities=19% Similarity=0.249 Sum_probs=228.9
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
+.|++.. . ++||++++++++. ++++|++|+|+++++..++..++++||+ |+++.|+|..+...+
T Consensus 54 ~~y~~~~-~-----~~lr~~ia~~~~~------~~~~i~it~G~~~~l~~~~~~l~~~gd~----Vlv~~p~y~~~~~~~ 117 (351)
T PRK14807 54 NIYPDPT-A-----EKLREELARYCSV------VPTNIFVGNGSDEIIHLIMLAFINKGDV----VIYPHPSFAMYSVYS 117 (351)
T ss_pred cCCCCcc-H-----HHHHHHHHHHhCC------CcccEEEecCHHHHHHHHHHHhcCCCCE----EEEeCCChHHHHHHH
Confidence 4566443 4 8999999999875 5569999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCCcc-cccc--------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC---CCc
Q 018172 105 DYLRSGLYKWDGDAN-TFDK--------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ---YTP 171 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~-~~~~--------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~---~~~ 171 (360)
+..|++++.++.+.+ +++. ..++++|++++||||||.+++ +.+.+++++++.++|+||+|.+.. ..+
T Consensus 118 ~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~ 197 (351)
T PRK14807 118 KIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVD 197 (351)
T ss_pred HHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHH
Confidence 999999999987643 2322 237899999999999999999 567777777788899999997421 122
Q ss_pred CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 172 ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 172 ~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
.....+++++++||||.|++||+|+||+++ ++++++.+...+. ..+.+.+.|.++..+++ + .++++..+.+
T Consensus 198 ~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~-~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~---~---~~~~~~~~~~ 268 (351)
T PRK14807 198 VINEFENLIVLRTLSKAFGLAGLRVGYAVA-NENILKYLNLVKS--PYNINSLSQVIALKVLR---T---GVLKERVNYI 268 (351)
T ss_pred HhhhCCCEEEEecchHhcccchhceeeeec-CHHHHHHHHHccC--CCCcCHHHHHHHHHHHh---H---HHHHHHHHHH
Confidence 234567899999999999999999999998 8999999987654 35678899999988886 2 5677777888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSML 331 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~ 331 (360)
+++++.+.+.|++++++.+. + +.++|+|+++++.+.+.+.|.++||.++++..+...++++||+++
T Consensus 269 ~~~r~~l~~~l~~~~g~~~~-~-------------~~~~~~~i~~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~ 334 (351)
T PRK14807 269 LNERERLIKELSKIPGIKVY-P-------------SKTNFILVKFKDADYVYQGLLERGILVRDFSKVEGLEGALRITVS 334 (351)
T ss_pred HHHHHHHHHHHHhCCCcEEC-c-------------CCccEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC
Confidence 99999999999877555442 2 234488999987777888888999999986543224679999994
Q ss_pred CChHHHHHHHHHHHHHH
Q 018172 332 SREEIFNIFLERLSAIQ 348 (360)
Q Consensus 332 ~~~e~~~~~~~~l~~~~ 348 (360)
.+++.++++++|++++
T Consensus 335 -~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 335 -SCEANDYLINGLKELL 350 (351)
T ss_pred -CHHHHHHHHHHHHHhh
Confidence 5677899999998764
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=292.57 Aligned_cols=271 Identities=20% Similarity=0.230 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCc
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDA 118 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~ 118 (360)
.+||++++++++. .++++|++|+|+++++..+.. ++++|+ |+++.|+|+.|...++..|++++.++.+.
T Consensus 56 ~~L~~~ia~~~~~-----~~~~~I~i~~Gs~e~i~~l~~-~~~~g~-----v~v~~P~y~~y~~~~~~~g~~~~~v~~~~ 124 (339)
T PRK06959 56 DGLAACAARYYGA-----PDAAHVLPVAGSQAAIRALPA-LLPRGR-----VGIAPLAYSEYAPAFARHGHRVVPLDEAA 124 (339)
T ss_pred HHHHHHHHHHhCC-----CCcccEEECcCHHHHHHHHHH-hcCCCe-----EEEcCCCcHHHHHHHHHCCCEEEeecccc
Confidence 7999999999986 134699999999999987654 567664 88899999999999999999999998765
Q ss_pred cccccCCCeeEEEEcCCCCCCcccchH-HHHH---HhhhcCcEEEEeecccCCCC-CcCCC--CCCccEEEeccccccCC
Q 018172 119 NTFDKNNGAYIEVVNSPNNPDGTIREA-VLAK---VNRSAEGKLIHDLAYYWPQY-TPITG--AADHDIMLFTLSKCTGH 191 (360)
Q Consensus 119 ~~~~~~~~~~~i~~~~p~NPtG~~~~~-~~~~---~~~~~~~~li~D~ay~~~~~-~~~~~--~~~~~i~~~S~sK~~~~ 191 (360)
+.+ ...+++++++|||||||.++++ .+.+ .+++++.++|+||+|.+... +++.. ..+++++++||||+||+
T Consensus 125 ~~~--~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~gl 202 (339)
T PRK06959 125 DTL--PAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFFGL 202 (339)
T ss_pred hhc--cccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhcCC
Confidence 332 2346799999999999999993 3333 34457999999999996432 22221 34679999999999999
Q ss_pred CCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccC
Q 018172 192 AGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLP 271 (360)
Q Consensus 192 ~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 271 (360)
+|+|+||+++ ++++++.+.+.+. .++.+.++|.++.++++ +. .+.++.++.++++|+++.+.|++++ +.+.
T Consensus 203 ~GlRiGy~v~-~~~li~~l~~~~~--~~~vs~~~q~a~~~~L~---~~--~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~ 273 (339)
T PRK06959 203 AGVRAGFVLA-APALLAALRDALG--AWTVSGPARHAVRAAFA---DA--AWQAAMRERLAADGARLAALLRAHG-FAVH 273 (339)
T ss_pred cchheEEEec-CHHHHHHHHHhcC--CCCCcHHHHHHHHHHhC---cH--HHHHHHHHHHHHHHHHHHHHHHHCC-CCcc
Confidence 9999999999 8999999998764 45678899999999887 33 7888999999999999999999984 3321
Q ss_pred CCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 272 EYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
+.++|+|+++++...+.+.|.++||.+++ |+. .+++||++..+++++++++++|++++..
T Consensus 274 ---------------~~~~f~~~~~~~~~~l~~~l~~~GI~vr~---~~~-~~~lRisi~~~~~e~~~l~~al~~~~~~ 333 (339)
T PRK06959 274 ---------------ATPLFSWTDDPRAAALHAALARRGIWTRY---FAP-PPSVRFGLPADEAEWQRLEDALAECVPT 333 (339)
T ss_pred ---------------CcceEEEEeCCCHHHHHHHHHhCCeEEEE---CCC-CCeEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 12358899987657788888999999985 443 5699999966888999999999987754
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=300.86 Aligned_cols=292 Identities=18% Similarity=0.187 Sum_probs=226.7
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCC-CCCCCcE--EEcCChHHHHHHHHHhh--cCCCCCCCceEEEeCCCCC
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNA-VSDGRHI--VIGTGSTQLYQAALYAL--SSPGGPEPISVVSAAPYYS 98 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~-~~~~~~i--~~t~G~t~~l~~~~~~l--~~~gd~~~~~vl~~~p~~~ 98 (360)
...|++..|. ++||+++++++...+.. +++ ++| ++|+|+++++.+++..+ +++||+ |++++|+|+
T Consensus 62 ~~~Y~~~~G~-----~~lR~aia~~~~~~~~~~~~~-~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~----Vlv~~P~y~ 131 (396)
T PRK09257 62 TKNYLPIEGL-----AAYRQAVQELLFGADSPALAA-GRVATVQTPGGTGALRVGADFLKRAFPDAK----VWVSDPTWP 131 (396)
T ss_pred CCCcCCCCCC-----HHHHHHHHHHhcCCCCccccc-CeEEEEecCCccHHHHHHHHHHHHhCCCCe----EEECCCCcc
Confidence 3469999998 99999999997655544 354 466 99999999999998766 589998 999999999
Q ss_pred CcHHHHHHhCCeeeeecC-Cc--ccccc----------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEe
Q 018172 99 QYPAETDYLRSGLYKWDG-DA--NTFDK----------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHD 161 (360)
Q Consensus 99 ~~~~~~~~~g~~~~~~~~-~~--~~~~~----------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D 161 (360)
.+..+++..|++++.++. +. .+++. .++++++++++||||||.++++ .+.++|+++++++|+|
T Consensus 132 ~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D 211 (396)
T PRK09257 132 NHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLD 211 (396)
T ss_pred cHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 999999999999999986 22 23332 1335677779999999999993 4567788899999999
Q ss_pred ecccCCCCC------cC---CCCCCccEEEeccccccCCCCceEEEEee--cCHH----HHHHHHHHHhhccccCChHHH
Q 018172 162 LAYYWPQYT------PI---TGAADHDIMLFTLSKCTGHAGSRIGWALV--KDTE----VARKMTRFIELGSIGVSKESQ 226 (360)
Q Consensus 162 ~ay~~~~~~------~~---~~~~~~~i~~~S~sK~~~~~G~r~G~~~~--~~~~----~~~~l~~~~~~~~~~~~~~~~ 226 (360)
|+|.+..+. ++ ....+++++++||||+|+++|+|+||+++ ++++ +.+.+.........+++.+.|
T Consensus 212 e~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 291 (396)
T PRK09257 212 IAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGA 291 (396)
T ss_pred ccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHH
Confidence 999853321 11 12356899999999999999999999973 3444 344444444444556788999
Q ss_pred HHHHHHhcccC--CCchhHHHHHHHHHHHHHHHHHHHHHhcC---CcccCCCCCcccccccccCCCCCCcccccCCchHH
Q 018172 227 LRAAKILGIVS--DDYPNFFEYGRRLMSERWNMLRQVIRQSG---VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDED 301 (360)
Q Consensus 227 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (360)
.++.+++.... +.++++++++++.++++++.+.+.|+++. .+.+..|.|++ |+|+++++ ++
T Consensus 292 ~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~-------------~~w~~l~~-~~ 357 (396)
T PRK09257 292 AIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGM-------------FSYSGLTP-EQ 357 (396)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccceE-------------EEecCCCH-HH
Confidence 99988886310 11347888999999999999999999884 25555666666 88998864 67
Q ss_pred HHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHH
Q 018172 302 CEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQ 348 (360)
Q Consensus 302 ~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~ 348 (360)
+.+++.++||.+.|. + ||+++. +++++++++++|++++
T Consensus 358 ~~~l~~~~~V~~~p~-------~--ri~~~~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 358 VDRLREEFGVYAVGS-------G--RINVAGLNESNIDYVAEAIAAVL 396 (396)
T ss_pred HHHHHHcCCEEEcCC-------C--eEEEeeCCHHHHHHHHHHHHhhC
Confidence 788889999999872 2 999975 9999999999998753
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=300.32 Aligned_cols=277 Identities=18% Similarity=0.209 Sum_probs=221.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCC-CCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPG-GPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~g-d~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
..+|++++++++|. ++++|++|+|+++++.+++..++++| |+ |+++.|+|..|...++..|++++.++.
T Consensus 59 ~~~l~~~~a~~~g~------~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~----vli~~P~y~~y~~~~~~~G~~~~~v~~ 128 (351)
T PRK01688 59 PKAVIENYAAYAGV------KPEQVLVSRGADEGIELLIRAFCEPGKDA----ILYCPPTYGMYSVSAETIGVEIRTVPT 128 (351)
T ss_pred hHHHHHHHHHHhCC------CHHHEEEcCCHHHHHHHHHHHhcCCCCCE----EEEcCCCHHHHHHHHHHcCCEEEEeec
Confidence 48999999999986 56799999999999999999999887 77 999999999999999999999999887
Q ss_pred Ccc-cccc------CCCeeEEEEcCCCCCCcccch-HHHHH---HhhhcCcEEEEeecccCCCCC----cCCCCCCccEE
Q 018172 117 DAN-TFDK------NNGAYIEVVNSPNNPDGTIRE-AVLAK---VNRSAEGKLIHDLAYYWPQYT----PITGAADHDIM 181 (360)
Q Consensus 117 ~~~-~~~~------~~~~~~i~~~~p~NPtG~~~~-~~~~~---~~~~~~~~li~D~ay~~~~~~----~~~~~~~~~i~ 181 (360)
+.+ .++. -+++++|+++|||||||..++ +.+.+ .|+ .+.++|+||+|.+.... ......+++++
T Consensus 129 ~~~~~~d~~~l~~~~~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~-~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv 207 (351)
T PRK01688 129 LDNWQLDLPAIADNLDGVKVVYVCSPNNPTGNLINPQDLRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLVI 207 (351)
T ss_pred CCCCCCCHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhcCCCCChHHHHhhCCCEEE
Confidence 543 1211 147899999999999999998 34333 344 36899999999864321 12245678999
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHH
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQV 261 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (360)
+.||||+||++|+|+||+++ ++++++.+.+... .++.+.+.|.++.++|. +...+++++.++.++++|+++.+.
T Consensus 208 ~rSfSK~~glaGlRiGy~i~-~~~~i~~l~~~~~--~~~v~~~~~~~a~~~L~---~~~~~~~~~~~~~~~~~r~~l~~~ 281 (351)
T PRK01688 208 LRTLSKAFALAGLRCGFTLA-NEEVINLLLKVIA--PYPLSTPVADIAAQALS---PQGIAAMRERVAEINANRQWLIAA 281 (351)
T ss_pred EecchHhhcCHHHHHhHHhC-CHHHHHHHHhccC--CCCCCHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 8999999987754 45677888888888776 221267888889999999999999
Q ss_pred HHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHH
Q 018172 262 IRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFL 341 (360)
Q Consensus 262 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~ 341 (360)
|++++++....| +.++|+|+++++.+.+.+.|.++||.++++..+...++++|+|+ .++|++++++
T Consensus 282 L~~~~~~~~~~p-------------s~~nfi~~~~~~~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~-~~~~e~~~l~ 347 (351)
T PRK01688 282 LKEIPCVEQVFD-------------SETNYILARFTASSAVFKSLWDQGIILRDQNKQPGLSNCLRITI-GTREECQRVI 347 (351)
T ss_pred HHhCCCCCeECC-------------CCCcEEEEEcCCHHHHHHHHHHCCeEEEECCCcCCCCCeEEEeC-CCHHHHHHHH
Confidence 998865432223 44568999987667777888899999998765532367999998 4778999999
Q ss_pred HHHH
Q 018172 342 ERLS 345 (360)
Q Consensus 342 ~~l~ 345 (360)
++|+
T Consensus 348 ~al~ 351 (351)
T PRK01688 348 DALR 351 (351)
T ss_pred HhhC
Confidence 8873
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=298.21 Aligned_cols=284 Identities=19% Similarity=0.238 Sum_probs=226.4
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCC-CCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPG-GPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~g-d~~~~~vl~~~p~~~~~~~~ 103 (360)
++|++.. . ++||++++++++. ++++|++|+|+++++++++.+++++| |+ |+++.|+|+.|...
T Consensus 55 ~~Yp~~~-~-----~~Lr~aia~~~~~------~~~~I~it~Gs~~~i~~~~~~~~~~g~d~----vlv~~P~y~~y~~~ 118 (354)
T PRK04635 55 NRYPECQ-P-----PELINAYSAYAGV------APEQILTSRGADEAIELLIRAFCEPGQDS----IACFGPTYGMYAIS 118 (354)
T ss_pred ccCCCCC-H-----HHHHHHHHHHhCc------CHHHEEEeCCHHHHHHHHHHHhcCCCCCe----EEEcCCChHHHHHH
Confidence 4466543 3 9999999999986 66799999999999999999999988 77 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc-----CCCeeEEEEcCCCCCCcccch-HHHHHHhhh-cCcEEEEeecccCCCC----Cc
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK-----NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRS-AEGKLIHDLAYYWPQY----TP 171 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~-----~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~-~~~~li~D~ay~~~~~----~~ 171 (360)
++..|++++.++++.+ .++. .+++++|++++||||||.+++ +.+.++++. .++++|+||+|.+... ..
T Consensus 119 ~~~~g~~v~~v~~~~~~~~~~~~l~~~~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~ 198 (354)
T PRK04635 119 AETFNVGVKALPLTADYQLPLDYIEQLDGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVAD 198 (354)
T ss_pred HHHcCCEEEEEecCCCCCCCHHHHHhccCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHH
Confidence 9999999999987643 2211 257899999999999999999 455555543 3699999999985321 12
Q ss_pred CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 172 ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 172 ~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
+....++++++.||||+||++|+|+||+++ ++++++.+.+... .++.+.+.|.++.+++.. .. ..++++.++.+
T Consensus 199 ~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~-~~~~~~~l~~~~~--~~~~~~~~~~~a~~~l~~--~~-~~~~~~~~~~~ 272 (354)
T PRK04635 199 LLASYPNLVVLRTLSKAFALAGARCGFTLA-NEELIEILMRVIA--PYPVPLPVSEIATQALSE--AG-LARMKFQVLDL 272 (354)
T ss_pred HHhhCCCEEEEechHHHhhhhHHHHhhhhC-CHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhc--cc-HHHHHHHHHHH
Confidence 223457889999999999999999999998 8999999886543 467788888888887762 21 25677788889
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSML 331 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~ 331 (360)
+++++.+.+.|++++++.+.. +.++|+|+++++.+.+.+.|.++||.++++..++ .++++|+|+
T Consensus 273 ~~~r~~l~~~L~~~~~~~~~~--------------~~g~f~~~~~~~~~~~~~~l~~~gv~v~~~~~~~-~~~~lRis~- 336 (354)
T PRK04635 273 NAQGARLQAALSMYGGAKVLE--------------GNGNYVLAKFDDVDAVFKALWDAGIVARAYKDPR-LANCIRFSF- 336 (354)
T ss_pred HHHHHHHHHHHHhCCCceECC--------------CCCcEEEEECCCHHHHHHHHHHCCEEEEECCCCC-CCCeEEEEe-
Confidence 999999999999986444332 2344889988766777888899999999764433 367999998
Q ss_pred CChHHHHHHHHHHHH
Q 018172 332 SREEIFNIFLERLSA 346 (360)
Q Consensus 332 ~~~e~~~~~~~~l~~ 346 (360)
.++|++++++++|++
T Consensus 337 ~~~e~~~~l~~al~~ 351 (354)
T PRK04635 337 SNRAETDKLIGLIRN 351 (354)
T ss_pred CCHHHHHHHHHHHHH
Confidence 578899999999975
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=296.05 Aligned_cols=286 Identities=21% Similarity=0.240 Sum_probs=221.3
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc---CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCC-CCCceEEEeCCCCCCc
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV---DNAVSDGRHIVIGTGSTQLYQAALYALSSPGG-PEPISVVSAAPYYSQY 100 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~---~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd-~~~~~vl~~~p~~~~~ 100 (360)
++|++ .|. ++||++++++++.+ +..+++ ++|++|+|+++++..++.+++.+|+ . |++++|+|..+
T Consensus 61 ~~Y~~-~G~-----~~Lr~aia~~~~~~~~~~~~v~~-~~I~it~Ga~~al~~~~~~~~~~g~~~----Vlv~~P~y~~~ 129 (374)
T PRK02610 61 NRYPD-GGH-----EALKQAIAEYVNESAAGSSQITP-ANISVGNGSDELIRSLLIATCLGGEGS----ILVAEPTFSMY 129 (374)
T ss_pred cCCCC-Cch-----HHHHHHHHHHhCccccccCCCCH-HHEEEcCChHHHHHHHHHHHcCCCCCe----EEEcCCChHHH
Confidence 35654 566 99999999998754 455666 4899999999999988888877776 6 99999999999
Q ss_pred HHHHHHhCCeeeeecCCcc--cccc--------C---CCeeEEEEcCCCCCCcccchH-HHHHHhh-hcCcEEEEeeccc
Q 018172 101 PAETDYLRSGLYKWDGDAN--TFDK--------N---NGAYIEVVNSPNNPDGTIREA-VLAKVNR-SAEGKLIHDLAYY 165 (360)
Q Consensus 101 ~~~~~~~g~~~~~~~~~~~--~~~~--------~---~~~~~i~~~~p~NPtG~~~~~-~~~~~~~-~~~~~li~D~ay~ 165 (360)
..+++..|++++.++.+.+ +++. . .++++|++++||||||.++++ .+.++.+ .+++++|+||+|.
T Consensus 130 ~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~ 209 (374)
T PRK02610 130 GILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYF 209 (374)
T ss_pred HHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEecccc
Confidence 9999999999999987643 3321 1 478999999999999999994 3333332 1589999999998
Q ss_pred CCCCCc---CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 166 WPQYTP---ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 166 ~~~~~~---~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
+....+ ......++++++||||+||+||+|+||+++ ++++++.+.+.+. .++.+.+.|.++..+++.. +.
T Consensus 210 ~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~-~~~l~~~l~~~~~--~~~~~~~~q~a~~~~l~~~----~~ 282 (374)
T PRK02610 210 EFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIG-HPELIAVLEKVRL--PYNLPSFSQLAAQLALEHR----QE 282 (374)
T ss_pred ccCccchHHHHhcCCCEEEEEecchhccCcccceeeeec-CHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCH----HH
Confidence 542211 112345788999999999999999999998 8999999988763 4677889999998888621 36
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCC
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRF 319 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f 319 (360)
+.+.+++.+++ ++.+.+.|+.++++.+ .|.+ ++|+|++++.. .++.+.|.++||.++++
T Consensus 283 ~~~~~~~~~~~-r~~l~~~L~~~~~~~~-~p~~-------------g~f~~~~l~~~~~~~~~~~~l~~~gi~v~~~--- 344 (374)
T PRK02610 283 LLAAIPEILQE-RDRLYQALQELPQLRV-WPSA-------------ANFLYLRLSQDAALAALHQALKAQGTLVRHT--- 344 (374)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhCCCcEe-CCCc-------------ceEEEEeCCCCCCHHHHHHHHHHCCEEEEeC---
Confidence 66666666554 7778899988755443 2433 34889998742 66777788999999863
Q ss_pred CCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 320 GADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 320 ~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
.+++|||++. ++++++++++|++++..
T Consensus 345 ---~~~lRls~~~-~~~~~~~l~~l~~~l~~ 371 (374)
T PRK02610 345 ---GGGLRITIGT-PEENQRTLERLQAALTQ 371 (374)
T ss_pred ---CCeEEEeCCC-HHHHHHHHHHHHHHHhh
Confidence 4689999964 56789999999998753
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=297.98 Aligned_cols=274 Identities=20% Similarity=0.262 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCc
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDA 118 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~ 118 (360)
++||++++++++. ++++|++|+|+++++..++..++++||+ |++++|+|+.|...++..|++++.++.+.
T Consensus 89 ~~lr~~ia~~~~~------~~~~I~~t~Ga~~~i~~~~~~~~~~gd~----Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~ 158 (380)
T PLN03026 89 RRLRAALAEDSGL------ESENILVGCGADELIDLLMRCVLDPGDK----IIDCPPTFGMYVFDAAVNGAEVIKVPRTP 158 (380)
T ss_pred HHHHHHHHHHhCc------ChhhEEEcCCHHHHHHHHHHHhcCCCCE----EEEcCCChHHHHHHHHHcCCEEEEeecCC
Confidence 8999999999985 5569999999999999999999999998 99999999999999999999999988753
Q ss_pred c-c-----ccc---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC----CcCCCCCCccEEEec
Q 018172 119 N-T-----FDK---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY----TPITGAADHDIMLFT 184 (360)
Q Consensus 119 ~-~-----~~~---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~----~~~~~~~~~~i~~~S 184 (360)
+ . +.. ++++++|++++||||||.+++ +.+.++++ ..+++|+||+|.+... .......+++++++|
T Consensus 159 ~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~-~~~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~S 237 (380)
T PLN03026 159 DFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILE-LPILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRT 237 (380)
T ss_pred CCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECcchhhcCCcchHHHHHhCCCEEEEec
Confidence 2 2 211 467899999999999999999 56677776 3489999999985321 112235678999999
Q ss_pred cccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 018172 185 LSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQ 264 (360)
Q Consensus 185 ~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (360)
|||+||++|+|+||+++ ++++++.+.+.+. .++.+.++|.++.++|+ +. .++++.++.++++|+.+.+.|++
T Consensus 238 fSK~~glaGlRiGy~~~-~~~~i~~l~~~~~--~~~~~~~~q~aa~~aL~---~~--~~~~~~~~~~~~~r~~l~~~L~~ 309 (380)
T PLN03026 238 FSKRAGLAGLRVGYGAF-PLSIIEYLWRAKQ--PYNVSVAAEVAACAALS---NP--KYLEDVKNALVEERERLFGLLKE 309 (380)
T ss_pred chHhhcCccccceeeec-CHHHHHHHHHhcC--CCCCCHHHHHHHHHHhh---CH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 8999999987764 46788899999998886 32 78999999999999999999999
Q ss_pred cCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHH
Q 018172 265 SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFL 341 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~ 341 (360)
+++..+ .| +.++|+|+++++ ...+.+.|.++||.++++..++ .++++|||++ +++++++++
T Consensus 310 ~~~~~~-~p-------------~~~~f~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~-~~~~lRis~~-~~~~~~~l~ 373 (380)
T PLN03026 310 VPFLEP-YP-------------SDANFILCRVTSGRDAKKLKEDLAKMGVMVRHYNSKE-LKGYIRVSVG-KPEHTDALM 373 (380)
T ss_pred CCCCeE-CC-------------CCCeEEEEECCCCCCHHHHHHHHHHCCeEEEECCCCC-CCCEEEEecC-CHHHHHHHH
Confidence 865432 23 334588998873 3667777779999999987654 3679999995 667888999
Q ss_pred HHHHHH
Q 018172 342 ERLSAI 347 (360)
Q Consensus 342 ~~l~~~ 347 (360)
++|+++
T Consensus 374 ~al~~~ 379 (380)
T PLN03026 374 EALKQL 379 (380)
T ss_pred HHHHHh
Confidence 888764
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=296.67 Aligned_cols=287 Identities=20% Similarity=0.263 Sum_probs=228.8
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..+|++. |. ++||++++++++. ++++|++|+|+++++++++..++++||+ |++++|+|+.+...
T Consensus 54 ~~~y~~~-~~-----~~lr~aia~~~~~------~~~~I~it~G~~~al~~~~~~l~~~gd~----vlv~~P~y~~~~~~ 117 (353)
T PRK05387 54 LRLYPDP-NA-----DALRQAIAAYYGL------DPEQVFVGNGSDEVLAHAFLAFFNHDRP----LLFPDITYSFYPVY 117 (353)
T ss_pred hhcCCCC-cH-----HHHHHHHHHHhCC------CHHHEEEcCCHHHHHHHHHHHhcCCCCE----EEEeCCCHHHHHHH
Confidence 3457654 44 8999999999974 5579999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc---CCCeeEEEEcCCCCCCcccch-HHHHHHhhh-cCcEEEEeecccCCCC---CcCCC
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRS-AEGKLIHDLAYYWPQY---TPITG 174 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~-~~~~li~D~ay~~~~~---~~~~~ 174 (360)
++..|++++.++.+.+ +++. ..+++++++++||||||.+++ +.+.++++. +++++|+||+|.+... .+...
T Consensus 118 ~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~ 197 (353)
T PRK05387 118 AGLYGIPYEEIPLDDDFSIDVEDYLRPNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLID 197 (353)
T ss_pred HHHcCCEEEEeecCCCCCCCHHHHHhcCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHh
Confidence 9999999999987643 2332 135688999999999999999 455566554 3999999999974321 22234
Q ss_pred CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh-ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHH
Q 018172 175 AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL-GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 175 ~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
..+++++++||||.|+++|+|+||+++ ++++++.+.+.+.. ..++.+.+.|.++.+++. +. .++++.++++.+
T Consensus 198 ~~~~~i~~~S~SK~~~~~GlR~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~---~~--~~~~~~~~~~~~ 271 (353)
T PRK05387 198 RYPNLLVVQTFSKSRSLAGLRVGFAIG-HPELIEALNRVKNSFNSYPLDRLAQAGAIAAIE---DE--AYFEETRAKVIA 271 (353)
T ss_pred hCCCEEEEEehhHhhcchhhhceeeec-CHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhc---CH--HHHHHHHHHHHH
Confidence 567899999999999999999999998 89999999887654 346788999999988886 22 778889999999
Q ss_pred HHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec
Q 018172 254 RWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRRFGADAKYARVSML 331 (360)
Q Consensus 254 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~ 331 (360)
+++.+.+.|++++ +.+. |.+ ++|+|+++++ .+.+.+.|.++||.+++....+ ..+++||+++
T Consensus 272 ~~~~l~~~L~~~g-~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~-~~~~iRis~~ 335 (353)
T PRK05387 272 TRERLVEELEALG-FEVL-PSK-------------ANFVFARHPSHDAAELAAKLRERGIIVRHFNKPR-IDQFLRITIG 335 (353)
T ss_pred HHHHHHHHHHHCC-CeEC-CCc-------------CcEEEEECCCCCHHHHHHHHHHCCEEEEECCCCC-CCCeEEEEeC
Confidence 9999999999884 4332 323 3478888764 3667777889999998632222 3679999995
Q ss_pred CChHHHHHHHHHHHHHHh
Q 018172 332 SREEIFNIFLERLSAIQG 349 (360)
Q Consensus 332 ~~~e~~~~~~~~l~~~~~ 349 (360)
+++++++++++|+++++
T Consensus 336 -~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 336 -TDEEMEALVDALKEILA 352 (353)
T ss_pred -CHHHHHHHHHHHHHHhh
Confidence 67899999999999865
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=294.50 Aligned_cols=285 Identities=19% Similarity=0.262 Sum_probs=226.7
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
++|++. +. ++||++++++++. ++++|++|+|+++++..++..+ .+|+ ++++.|+|..+..++
T Consensus 50 ~~y~~~-~~-----~~lr~~ia~~~~~------~~~~i~it~Ga~~~l~~~~~~l-~~g~-----viv~~P~y~~~~~~~ 111 (356)
T PRK08056 50 ERYPDV-EY-----RHLHQALARHHQV------PASWILAGNGETESIFAVVSGL-KPRR-----AMIVTPGFAEYRRAL 111 (356)
T ss_pred ccCcCc-cH-----HHHHHHHHHHhCc------ChhhEEECCCHHHHHHHHHHHh-CCCC-----EEEeCCCcHHHHHHH
Confidence 457654 45 9999999999875 5569999999999999998886 5664 777889999999999
Q ss_pred HHhCCeeeeecCCc-ccccc--------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCC--
Q 018172 105 DYLRSGLYKWDGDA-NTFDK--------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQY-- 169 (360)
Q Consensus 105 ~~~g~~~~~~~~~~-~~~~~--------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~-- 169 (360)
+..|++++.++.+. +++.. .++++++++++||||||.++++ .+.++|+++++++|+||+|.+..+
T Consensus 112 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~ 191 (356)
T PRK08056 112 QQVGCEIRRYSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDE 191 (356)
T ss_pred HHcCCeEEEEecccccCCCccHHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcc
Confidence 99999999998763 33333 3678999999999999999983 345677779999999999975321
Q ss_pred ---CcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHH
Q 018172 170 ---TPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEY 246 (360)
Q Consensus 170 ---~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 246 (360)
.+.....+++++++||||.|+++|+|+||++++++++++.+.+.. ..++.+.+.|.++..++. +. .+..+
T Consensus 192 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~---~~--~~~~~ 264 (356)
T PRK08056 192 TGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQ--MPWSINAFAALAGEVILQ---DR--AYQQA 264 (356)
T ss_pred hHHHHHhccCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhC--CCCchhHHHHHHHHHHhC---CH--HHHHH
Confidence 122234568999999999999999999999985678888887654 346677788888888775 32 77888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCC-CCCC
Q 018172 247 GRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFG-ADAK 324 (360)
Q Consensus 247 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~-~~~~ 324 (360)
.++.++++++.+.+.|+.++++.+. + +.++|+|++++.. ..+.+.|.++||.++||..|. ...+
T Consensus 265 ~~~~~~~~r~~l~~~L~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~ 330 (356)
T PRK08056 265 TWQWLAEEGARFYQALCALPLLTVW-P-------------GRANYLFLRCERPDIDLQRALLTQRILIRSCANYPGLDSR 330 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEc-C-------------CCCcEEEEEcCCChHHHHHHHHHCCeEEEECCCCCCCCCC
Confidence 8999999999999999988654432 2 2344889988643 566777778999999999884 3567
Q ss_pred eEEEEecCChHHHHHHHHHHHHHHh
Q 018172 325 YARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 325 ~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
++||++ .++++.+.++++|+++++
T Consensus 331 ~iRis~-~~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 331 YYRVAI-RSAAENERLLAALRNVLT 354 (356)
T ss_pred EEEEEE-cCHHHHHHHHHHHHHHHc
Confidence 999998 567888999999998764
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=290.72 Aligned_cols=269 Identities=19% Similarity=0.221 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCc
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDA 118 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~ 118 (360)
.+||++++++++. ++|++|+|+++++.+++ .+.+||+ |++++|+|+.+...++..|++++.++.+.
T Consensus 52 ~~Lr~~ia~~~~~--------~~I~it~Gs~~al~~~~--~~~~gd~----v~v~~P~y~~~~~~~~~~g~~~~~v~~~~ 117 (330)
T PRK05664 52 DGLEAAARAYYGA--------PQLLPVAGSQAAIQALP--RLRAPGR----VGVLSPCYAEHAHAWRRAGHQVRELDEAE 117 (330)
T ss_pred HHHHHHHHHHhCC--------CCEEECcCHHHHHHHHH--HccCCCE----EEEcCCChHHHHHHHHHcCCeEEEechhh
Confidence 8999999999983 48999999999999885 3578998 99999999999999999999999998753
Q ss_pred ccccc-CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCC-CcCC--CCCCccEEEeccccccC
Q 018172 119 NTFDK-NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQY-TPIT--GAADHDIMLFTLSKCTG 190 (360)
Q Consensus 119 ~~~~~-~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~-~~~~--~~~~~~i~~~S~sK~~~ 190 (360)
+.. -.++++++++|||||||.+++. .+.++|+++++++|+||+|.+... .++. ...+++++++||||+||
T Consensus 118 --~~~~~~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~g 195 (330)
T PRK05664 118 --VEAALDSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFG 195 (330)
T ss_pred --HhhhhcCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeecccccc
Confidence 211 1357889999999999999993 334556668999999999975421 2222 23468999999999999
Q ss_pred CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 018172 191 HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGL 270 (360)
Q Consensus 191 ~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 270 (360)
+||+|+||+++ ++++++.+.+... .++.+.+.|.++.++|+ +. .+.++.++.++++++.+.+.|++++ +.
T Consensus 196 l~GlRiG~~v~-~~~l~~~~~~~~~--~~~~~~~~~~~~~~~L~---~~--~~~~~~~~~~~~~r~~l~~~L~~~~-~~- 265 (330)
T PRK05664 196 LAGARLGFVLA-EPALLRALAELLG--PWTVSGPTRWLAQAALA---DT--PWQRRQRERLLAASQRLAALLRRHG-LT- 265 (330)
T ss_pred CCCcceEEEEe-CHHHHHHHHHhcC--CCCCCHHHHHHHHHHHh---Ch--HHHHHHHHHHHHHHHHHHHHHHHCC-Cc-
Confidence 99999999999 8999999987754 45678899999988887 32 6678889999999999999999984 22
Q ss_pred CCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 271 PEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
+.++ ..+|+|++.++...+.+.|.++||.+++ |+ .++++||+++.++++++++.++|+++.++
T Consensus 266 --~~~~-----------~~~f~~~~~~~~~~~~~~l~~~gi~v~~---f~-~~~~iRis~~~~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 266 --PAGG-----------CALFQWVRTEDAAALHEFLARRGILTRL---FE-QPASLRFGLPADEADWARLDQALLAYRKE 328 (330)
T ss_pred --ccCC-----------cceEEEEecCCHHHHHHHHHHCCeEEEE---CC-CCCeEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 3232 2247899887667778888899999985 54 36799999976788899999999887654
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=295.33 Aligned_cols=286 Identities=21% Similarity=0.249 Sum_probs=230.5
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|+++. . ++||++++++++. ++++|++|+|+++++..++..++++||. |++++|+|+.+...+
T Consensus 62 ~~Y~~~~-~-----~~Lr~~ia~~~~~------~~~~I~it~G~~~~l~~~~~~~~~~gd~----vlv~~p~y~~~~~~~ 125 (369)
T PRK08153 62 WKYGDPE-N-----HDLRHALAAHHGV------APENIMVGEGIDGLLGLIVRLYVEPGDP----VVTSLGAYPTFNYHV 125 (369)
T ss_pred hcCCCCc-c-----HHHHHHHHHHhCC------CHHHEEEcCCHHHHHHHHHHHhcCCCCE----EEECCCcchHHHHHH
Confidence 4577654 4 8999999999975 5579999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCCcccccc--------CCCeeEEEEcCCCCCCcccchH-HH---HHHhhhcCcEEEEeecccCCC----
Q 018172 105 DYLRSGLYKWDGDANTFDK--------NNGAYIEVVNSPNNPDGTIREA-VL---AKVNRSAEGKLIHDLAYYWPQ---- 168 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~~--------~~~~~~i~~~~p~NPtG~~~~~-~~---~~~~~~~~~~li~D~ay~~~~---- 168 (360)
...|++++.++.+.+..+. +++++++++++||||||.+++. ++ .++++ +++++|+||+|.+..
T Consensus 126 ~~~g~~~~~vp~~~~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~ 204 (369)
T PRK08153 126 AGFGGRLVTVPYRDDREDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGA 204 (369)
T ss_pred HHcCCeEEEeeCCCCCCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCccc
Confidence 9999999999876543322 3578999999999999999993 33 34455 589999999998532
Q ss_pred CCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHH
Q 018172 169 YTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGR 248 (360)
Q Consensus 169 ~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (360)
..++....+++++++||||+||++|+|+||+++ ++++++.+.+.+. .++.+.++|.++.++++ +. .++++.+
T Consensus 205 ~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~-~~~~~~~l~~~~~--~~~~s~~~q~~~~~~l~---~~--~~~~~~~ 276 (369)
T PRK08153 205 APPIDTDDPNVIRMRTFSKAYGLAGARVGYAIG-APGTIKAFDKVRN--HFGMNRIAQAAALAALK---DQ--AYLAEVV 276 (369)
T ss_pred chhhhhcCCCEEEEecchHhccCcchheeeeec-CHHHHHHHHHhhc--CCCCCHHHHHHHHHHhc---CH--HHHHHHH
Confidence 223333456899999999999999999999999 8999999987764 46789999999999886 33 7888999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeee-CCCCCCCCC
Q 018172 249 RLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMAR-GGRRFGADA 323 (360)
Q Consensus 249 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~-pg~~f~~~~ 323 (360)
+.++++++.+.+.|++.+ +... | +.++|+|++++. ...+.+.|.++||.++ ||... .+
T Consensus 277 ~~~~~~r~~~~~~L~~~g-~~~~-p-------------~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~~p~~~~--~~ 339 (369)
T PRK08153 277 GKIAAARDRIAAIARANG-LTPL-P-------------SATNFVAIDCGRDGAFARAVLDGLIARDIFVRMPGVAP--LD 339 (369)
T ss_pred HHHHHHHHHHHHHHHHCC-CccC-C-------------CcCcEEEEECCCCcccHHHHHHHHHHCCeEEeeCCCCC--CC
Confidence 999999999999999874 3322 3 334478888742 2567777778999995 66422 25
Q ss_pred CeEEEEecCChHHHHHHHHHHHHHHhchhc
Q 018172 324 KYARVSMLSREEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 324 ~~~R~s~~~~~e~~~~~~~~l~~~~~~~~~ 353 (360)
+++|++++ ++++++.++++|.+++...++
T Consensus 340 ~~iRis~~-~~~~~~~~~~al~~~~~~~~~ 368 (369)
T PRK08153 340 RCIRVSCG-PDEELDLFAEALPEALEAARK 368 (369)
T ss_pred CeEEEecC-CHHHHHHHHHHHHHHHHHhhc
Confidence 69999995 788999999999999876554
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=293.59 Aligned_cols=294 Identities=21% Similarity=0.258 Sum_probs=236.7
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
+.|+++.|. ++||++++++++. ++++|++|+|++++++.++..++.+||+ |++++|+|..+...+
T Consensus 60 ~~y~~~~g~-----~~lr~~ia~~l~~------~~~~v~~~~g~t~al~~~~~~~~~~gd~----vl~~~p~y~~~~~~~ 124 (380)
T PRK06225 60 CKYPPPEGF-----PELRELILKDLGL------DDDEALITAGATESLYLVMRAFLSPGDN----AVTPDPGYLIIDNFA 124 (380)
T ss_pred CCCCCCcch-----HHHHHHHHHhcCC------CCCcEEEeCCHHHHHHHHHHHhcCCCCE----EEEcCCCCcchHHHH
Confidence 468888887 9999999999875 4568999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCCc--ccccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCC--
Q 018172 105 DYLRSGLYKWDGDA--NTFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWP-- 167 (360)
Q Consensus 105 ~~~g~~~~~~~~~~--~~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~-- 167 (360)
+..|++++.++++. +++.. +++++++++++||||||.+++ +.+.++|+++|+++|+|++|.+.
T Consensus 125 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 204 (380)
T PRK06225 125 SRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAR 204 (380)
T ss_pred HHhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhc
Confidence 99999999888642 12211 357899999999999999987 34567788899999999999632
Q ss_pred CCCc-CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHH
Q 018172 168 QYTP-ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEY 246 (360)
Q Consensus 168 ~~~~-~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 246 (360)
...+ .....++++++.||||.||++|+|+||+++ ++++++.+..... ...+.+.+.|.++...+.. . ..++++
T Consensus 205 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~-~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~l~~--~--~~~~~~ 278 (380)
T PRK06225 205 EHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVA-TPDLIEVVKSIVI-NDLGTNVIAQEAAIAGLKV--K--DEWIDR 278 (380)
T ss_pred cCCchhhcCCCCEEEEeechhhcCCccceeEEEec-CHHHHHHHHHHHh-cccCCCHHHHHHHHHHHhc--c--hHHHHH
Confidence 1111 112347889999999999999999999999 8899999887653 4677889999998887763 2 277888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccC-CCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeeeCCCCCCC
Q 018172 247 GRRLMSERWNMLRQVIRQSGVFGLP-EYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMARGGRRFGA 321 (360)
Q Consensus 247 ~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~pg~~f~~ 321 (360)
.++.++++++.+.+.|+++++..+. .+ +.++|+|++++. ...+.+.|.++||.++||..|+.
T Consensus 279 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~-------------~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~ 345 (380)
T PRK06225 279 IRRTTFKNQKLIKEAVDEIEGVFLPVYP-------------SHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTSK 345 (380)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCccccCC-------------CCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccCc
Confidence 8888999999999999987554321 22 234477887753 26677777799999999987753
Q ss_pred --CCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 322 --DAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 322 --~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
+.+++|+|++.++|++++++++|+++++..|
T Consensus 346 ~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 346 RFGDRYIRVSFSIPREQVEVFCEEFPDVVETLR 378 (380)
T ss_pred CCCCceEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence 3569999998899999999999999998765
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=290.06 Aligned_cols=276 Identities=20% Similarity=0.286 Sum_probs=221.7
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
.++|+++ |. ++||++++++++..+ + ++++|++|+|++++++.++..+ |. |++++|+|+.+..+
T Consensus 50 ~~~Y~~~-~~-----~~Lr~aia~~~~~~~--~-~~~~i~it~Ga~~~i~~~~~~~----d~----v~v~~P~y~~~~~~ 112 (335)
T PRK14808 50 LRIYYDS-PD-----EELIEKILSYLDTDF--L-SKNNVSVGNGADEIIYVMMLMF----DR----SVFFPPTYSCYRIF 112 (335)
T ss_pred hhcCCCC-Ch-----HHHHHHHHHHhCCCC--C-CcceEEEcCCHHHHHHHHHHHh----Cc----EEECCCCHHHHHHH
Confidence 3446654 55 999999999998654 3 4569999999999999999887 56 99999999999999
Q ss_pred HHHhCCeeeeecCCcccccc---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC---CCcCCCCC
Q 018172 104 TDYLRSGLYKWDGDANTFDK---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ---YTPITGAA 176 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~---~~~~~~~~ 176 (360)
++..|++++.++.+.+.... -.++++++++|||||||.+++ +.+.++++ +++++|+||+|.+.. ..+.....
T Consensus 113 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~i~i~nP~NPTG~~~s~~~l~~l~~-~~~~ii~DE~Y~~f~~~~~~~~~~~~ 191 (335)
T PRK14808 113 AKAVGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFEREEIERILK-TGAFVALDEAYYEFHGESYVDLLKKY 191 (335)
T ss_pred HHHcCCeEEEecCCCcCCCChhHccCCCEEEEeCCCCCCCCCcCHHHHHHHHh-cCCEEEEECchhhhcCCchHHHHHhC
Confidence 99999999999987543221 135789999999999999999 45667776 899999999998532 12222355
Q ss_pred CccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHH
Q 018172 177 DHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWN 256 (360)
Q Consensus 177 ~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (360)
+++++++||||+|+++|+|+||+++ ++++++.+.+.+. .++.+.+.|.++.++++ +. .++.+.++.++++++
T Consensus 192 ~~vi~~~S~SK~~~l~GlRvG~~v~-~~~~~~~l~~~~~--~~~~~~~~q~a~~~~l~---~~--~~~~~~~~~~~~~r~ 263 (335)
T PRK14808 192 ENLAVIRTFSKAFSLAAQRIGYVVS-SEKFIDAYNRVRL--PFNVSYVSQMFAKVALD---HR--EIFEERTKFIVEERE 263 (335)
T ss_pred CCEEEEEechhhccCcccceEEEEe-CHHHHHHHHHhcC--CCCCCHHHHHHHHHHHh---CH--HHHHHHHHHHHHHHH
Confidence 7899999999999999999999999 8899999987663 46788899999888776 22 567778888888999
Q ss_pred HHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch--HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCCh
Q 018172 257 MLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED--EDCEKLLRAERIMARGGRRFGADAKYARVSMLSRE 334 (360)
Q Consensus 257 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~ 334 (360)
.+.+.|++++ +.+..+ .++|+|+.++.. ..+.+.|.++||.++. | .+++|+++ .++
T Consensus 264 ~l~~~L~~~g-~~~~~~--------------~g~f~~~~l~~~~~~~~~~~l~~~Gi~V~~---~---~~~~Risi-~~~ 321 (335)
T PRK14808 264 RMKSALREMG-YRITDS--------------RGNFVFIFMEKEEKERLLEHLRAKNIAVRS---F---REGVRITI-GKR 321 (335)
T ss_pred HHHHHHHHCC-CEECCC--------------CCeEEEEeCCCccHHHHHHHHHHCCeEEEE---C---CCCeEEec-CCH
Confidence 9999999884 443333 344788888643 6788899999999995 3 35899998 667
Q ss_pred HHHHHHHHHHHHH
Q 018172 335 EIFNIFLERLSAI 347 (360)
Q Consensus 335 e~~~~~~~~l~~~ 347 (360)
+++++++++|+++
T Consensus 322 ~~~~~~~~~l~~~ 334 (335)
T PRK14808 322 EENDMILKELEVF 334 (335)
T ss_pred HHHHHHHHHHHhh
Confidence 8889999999864
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=292.65 Aligned_cols=293 Identities=22% Similarity=0.277 Sum_probs=232.7
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|++..|+ +++|++++++++. .+..+++ ++|++|+|++++++.++..++++||. |++++|+|..+..
T Consensus 66 ~~~y~~~~g~-----~~lr~~ia~~l~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~----Vli~~p~~~~~~~ 135 (394)
T PRK06836 66 LHGYMPNAGY-----PEVREAIAESLNRRFGTPLTA-DHIVMTCGAAGALNVALKAILNPGDE----VIVFAPYFVEYRF 135 (394)
T ss_pred cccCCCCCCC-----HHHHHHHHHHHHHHhCCCCCc-CcEEEeCChHHHHHHHHHHhcCCCCE----EEEcCCCCccHHH
Confidence 3568888887 9999999999874 4555555 58999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcc--cccc-------CCCeeEEEEcCCCCCCcccchH----HHHHHhhh------cCcEEEEeec
Q 018172 103 ETDYLRSGLYKWDGDAN--TFDK-------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRS------AEGKLIHDLA 163 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~--~~~~-------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~------~~~~li~D~a 163 (360)
+++..|++++.++.+.+ +++. +++++++++++||||||.+++. .+.++|++ +++++|+|++
T Consensus 136 ~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~ 215 (394)
T PRK06836 136 YVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEP 215 (394)
T ss_pred HHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc
Confidence 99999999999988765 3322 3678999999999999999982 45567777 7999999999
Q ss_pred ccCCC-----CCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHH------HHHHHhh-ccccCChHHHHHHHH
Q 018172 164 YYWPQ-----YTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARK------MTRFIEL-GSIGVSKESQLRAAK 231 (360)
Q Consensus 164 y~~~~-----~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~------l~~~~~~-~~~~~~~~~~~~~~~ 231 (360)
|.+.. .+.+....+++++++||||.|++||+|+||+++ ++++.+. +...... ...+.+.+.|.++..
T Consensus 216 y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 294 (394)
T PRK06836 216 YREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAV-NPEMEDADDLVAALVFANRILGFVNAPALMQRVVAK 294 (394)
T ss_pred ccccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEec-CHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHH
Confidence 98432 222334567899999999999999999999998 6655332 2212221 124678889999988
Q ss_pred HhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhh
Q 018172 232 ILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAE 309 (360)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 309 (360)
++.. . ..+..++++++.+.+.|+++ ++.+..|.+++ |+|++++. ...+.+.|+++
T Consensus 295 ~l~~---~------~~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~-------------~~~~~~~~~~~~~~~~~l~~~ 351 (394)
T PRK06836 295 CLDA---T------VDVSIYKRNRDLLYDGLTEL-GFECVKPQGAF-------------YLFPKSPEEDDVAFCEKAKKH 351 (394)
T ss_pred HhCC---h------HHHHHHHHHHHHHHHHHHhC-CCEeecCCceE-------------EEEEeCCCCCHHHHHHHHHhC
Confidence 8862 1 12567888999999999988 45555555554 77877754 35566888899
Q ss_pred CeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 310 RIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 310 gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
||.++||..|+. ++++||+++.+++++++++++|++++++.
T Consensus 352 gv~v~~g~~f~~-~~~iRi~~~~~~~~~~~~i~~l~~~l~~~ 392 (394)
T PRK06836 352 NLLLVPGSGFGC-PGYFRLSYCVDTETIERSLPAFEKLAKEY 392 (394)
T ss_pred CEEEECchhcCC-CCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 999999999974 68999999889999999999999999764
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=292.48 Aligned_cols=281 Identities=20% Similarity=0.224 Sum_probs=221.7
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
++|+++. . ++||++++++++. ++++|++|+|++++++.++..++++||. |++++|+|+.+...+
T Consensus 73 ~~Y~~~~-~-----~~Lr~aia~~~~v------~~e~I~it~Gs~~ai~~~~~~l~~~gd~----Vli~~P~y~~~~~~~ 136 (370)
T PRK09105 73 GRYDLEL-E-----DDLRTLFAAQEGL------PADHVMAYAGSSEPLNYAVLAFTSPTAG----LVTADPTYEAGWRAA 136 (370)
T ss_pred cCCCCch-H-----HHHHHHHHHHhCc------ChhhEEEcCChHHHHHHHHHHHcCCCCE----EEEeCCChHHHHHHH
Confidence 3576554 5 9999999999875 5669999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCCccc-cc-----c-CCCeeEEEEcCCCCCCcccch-HHHHHHhh--hcCcEEEEeecccCCCC-Cc--
Q 018172 105 DYLRSGLYKWDGDANT-FD-----K-NNGAYIEVVNSPNNPDGTIRE-AVLAKVNR--SAEGKLIHDLAYYWPQY-TP-- 171 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~~-~~-----~-~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~--~~~~~li~D~ay~~~~~-~~-- 171 (360)
+..|++++.++.+.+. ++ . .+++++++++|||||||.+++ +.+.++.+ ++++++|+||+|.+... ++
T Consensus 137 ~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~ 216 (370)
T PRK09105 137 DAQGAPVAKVPLRADGAHDVKAMLAADPNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVV 216 (370)
T ss_pred HHcCCeEEEecCCCCCCCCHHHHHhcCCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchH
Confidence 9999999998876431 11 1 357899999999999999998 33443332 25899999999974221 11
Q ss_pred -CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHH
Q 018172 172 -ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRL 250 (360)
Q Consensus 172 -~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (360)
+....+++++++||||.||++|+|+||+++ ++++++.+... ...+.+.+.|.++.+++. + +.++++.++.
T Consensus 217 ~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~-~~~~i~~l~~~---~~~~~~~~~~~aa~~~L~---~--~~~~~~~~~~ 287 (370)
T PRK09105 217 DLVAQRKDLIVLRTFSKLYGMAGMRLGLAAA-RPDLLAKLARF---GHNPLPVPAAAAGLASLR---D--PKLVPQRRAE 287 (370)
T ss_pred HHHhhCCCEEEEecccHhhcCCccceeeeec-CHHHHHHHHhc---CCCCcCHHHHHHHHHHHh---C--HHHHHHHHHH
Confidence 223467899999999999999999999998 89999988776 234577888888888776 2 2889999999
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-chHHHHHHHHhhCeeeeCCCCCCCCCCeEEEE
Q 018172 251 MSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-EDEDCEKLLRAERIMARGGRRFGADAKYARVS 329 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s 329 (360)
++++++.+.+.|+++ ++.+..+.+ +|++++++ +...+.+.|.++||.+ |..|+..++++|++
T Consensus 288 ~~~~r~~l~~~L~~~-g~~~~~~~~--------------~f~~~~~~~~~~~l~~~L~~~gI~v--~~~~~~~~~~~Ris 350 (370)
T PRK09105 288 NAAVREDTIAWLKKK-GYKCTPSQA--------------NCFMVDVKRPAKAVADAMAKQGVFI--GRSWPIWPNWVRVT 350 (370)
T ss_pred HHHHHHHHHHHHHHC-CCCcCCCCC--------------cEEEEeCCCCHHHHHHHHHHCCcEE--ecCCCCCCCeEEEE
Confidence 999999999999987 444443433 35567665 3366777777889998 34454347899999
Q ss_pred ecCChHHHHHHHHHHHHHH
Q 018172 330 MLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 330 ~~~~~e~~~~~~~~l~~~~ 348 (360)
++ +++++++++++|++++
T Consensus 351 ~~-~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 351 VG-SEEEMAAFRSAFAKVM 368 (370)
T ss_pred cC-CHHHHHHHHHHHHHHh
Confidence 85 6788899999998876
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=293.45 Aligned_cols=285 Identities=22% Similarity=0.302 Sum_probs=226.3
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..+|++..| .+||++++++++. ++++|++|+|+++++..++..++++||+ |+++.|+|+.+...
T Consensus 65 ~~~Y~~~~g------~~lr~~ia~~~~~------~~~~i~~t~G~~~~l~~~~~~~~~~gd~----vli~~P~y~~~~~~ 128 (371)
T PRK05166 65 LRLYPDPQG------RALREAIAARTGV------PADRIILGNGSEDLIAVICRAVLRPGDR----VVTLYPSFPLHEDY 128 (371)
T ss_pred hhcCCCCcH------HHHHHHHHHHhCc------CHHHEEEcCCHHHHHHHHHHHhcCCCCE----EEEcCCChHHHHHH
Confidence 345887775 5899999999875 5569999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc-------CCCeeEEEEcCCCCCCcccchH-HH---HHHhhhcCcEEEEeecccCCCC--
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK-------NNGAYIEVVNSPNNPDGTIREA-VL---AKVNRSAEGKLIHDLAYYWPQY-- 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~-------~~~~~~i~~~~p~NPtG~~~~~-~~---~~~~~~~~~~li~D~ay~~~~~-- 169 (360)
++..|++++.++.+.+ +++. +++++++++++||||||.+++. .+ .++|+ +++++|+||+|.+...
T Consensus 129 ~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~-~~~~ii~De~y~~~~~~~ 207 (371)
T PRK05166 129 PTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDATP-PETLIVVDEAYAEYAAGD 207 (371)
T ss_pred HHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECcHHHhcCCc
Confidence 9999999999987643 3322 3578999999999999999983 33 34455 5889999999984221
Q ss_pred --CcC----CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 170 --TPI----TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 170 --~~~----~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
++. ....+++++++||||.|+++|+|+||++++++++++.+.+.+. ..+.+.++|.++.+++. +. .+
T Consensus 208 ~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~--~~~~~~~~q~~~~~~l~---~~--~~ 280 (371)
T PRK05166 208 DYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRT--PFNVNGAAQAAALAALD---DE--EH 280 (371)
T ss_pred CcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhcc--CCCCCHHHHHHHHHHhc---CH--HH
Confidence 121 1234579999999999999999999987657889998877653 46788899988888776 32 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGAD 322 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~~ 322 (360)
+++.++.++++++.+.+.|++++ +.+. | +.++|+|++++.. ..+.+.|.++||.++||..++.
T Consensus 281 ~~~~~~~~~~~r~~l~~~L~~~g-~~~~-p-------------~~g~fl~~~~~~~~~~l~~~l~~~gi~v~p~~~~~~- 344 (371)
T PRK05166 281 LAKGVALALAERERLKKELAEMG-YRIA-P-------------SRANFLFFDARRPASAVAEALLRQGVIVKPWKQPGF- 344 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCc-CeeC-C-------------CcCCEEEEeCCCCHHHHHHHHHHCCeEEecCCCCCC-
Confidence 99999999999999999999884 4332 3 2344889988643 6677777788999999987664
Q ss_pred CCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 323 AKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 323 ~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
++++||+++ .+++.+++.++|+++++
T Consensus 345 ~~~iRi~~~-~~~~~~~l~~~l~~i~~ 370 (371)
T PRK05166 345 ETFIRVSIG-SPEENDHFVAALDKVLE 370 (371)
T ss_pred CCeEEEEcC-CHHHHHHHHHHHHHHhh
Confidence 789999995 56667888888877653
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=297.68 Aligned_cols=295 Identities=25% Similarity=0.344 Sum_probs=236.4
Q ss_pred cccccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCC
Q 018172 22 DLMSYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQ 99 (360)
Q Consensus 22 ~~~~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~ 99 (360)
.....|+++.|. ++||++++++++ ..+.+.+++.+|++|+|+.+++..++..+ .++|++ |++++|+|+.
T Consensus 35 ~~~~~Y~~~~g~-----~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~~~~~~----vlv~~P~y~~ 105 (363)
T PF00155_consen 35 SSFLGYPPPQGY-----PELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKINPGDT----VLVPDPCYPS 105 (363)
T ss_dssp TGCTSSTCTTHH-----HHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHSSTTSE----EEEEESSSTH
T ss_pred cccccCCCchhh-----HHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhccccccccc----ceecCCcccc
Confidence 355679999998 999999999988 55666666558999999999999999999 888998 9999999999
Q ss_pred cHHHHHHhCCeeeeecCC--------cccccc--CC------CeeEEEEcCCCCCCcccch-H---HHHHHhhhcCcEEE
Q 018172 100 YPAETDYLRSGLYKWDGD--------ANTFDK--NN------GAYIEVVNSPNNPDGTIRE-A---VLAKVNRSAEGKLI 159 (360)
Q Consensus 100 ~~~~~~~~g~~~~~~~~~--------~~~~~~--~~------~~~~i~~~~p~NPtG~~~~-~---~~~~~~~~~~~~li 159 (360)
+...++..|++++.++++ .+.+.. ++ +++++++++||||||.+++ + .+.++|+++++++|
T Consensus 106 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii 185 (363)
T PF00155_consen 106 YIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIII 185 (363)
T ss_dssp HHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEE
T ss_pred ccccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhccccccee
Confidence 999999999999999854 122221 12 5789999999999999998 3 34455888999999
Q ss_pred EeecccCCCCC--------cCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHH
Q 018172 160 HDLAYYWPQYT--------PITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAK 231 (360)
Q Consensus 160 ~D~ay~~~~~~--------~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (360)
+||+|.+..+. .......+++++.|+||+||++|+|+||+++ ++++++.+.+....... +.+.|.++.+
T Consensus 186 ~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~~ 262 (363)
T PF00155_consen 186 VDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVA-PPELIERLRRFQRSGLS--SSPMQAAAAA 262 (363)
T ss_dssp EEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEE-EHHHHHHHHHHHHHTTS--SHHHHHHHHH
T ss_pred eeeceeccccCCCccCcccccccccccceeeeeccccccccccccccccc-hhhhhhhhhhccccccc--cchhhHHHHH
Confidence 99999963222 1223455589999999999999999999999 89999999988865444 8888988888
Q ss_pred HhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch--HHHHHHHHhh
Q 018172 232 ILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED--EDCEKLLRAE 309 (360)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~ 309 (360)
++.... ....++++.++.++++++.+.+.|+++ ++.+..+.+++ |+|+.++.. ..+.+.|.++
T Consensus 263 ~l~~~~-~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~L~~~ 327 (363)
T PF00155_consen 263 ALSDPE-LVEKWLEELRERLRENRDLLREALEEI-GITVLPPEAGF-------------FLWVRLDPNDAEELAQELLEE 327 (363)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHSBSS-------------EEEEEESHHHHHHHHHHHHHH
T ss_pred hhhccc-ccccccccchhhHHHHHHHHHHHHHHh-hhheeeccCcc-------------EEEEEcccchHHHHHHHHHHh
Confidence 777321 112389999999999999999999998 56655555554 778877653 4444445555
Q ss_pred -CeeeeCCCCCCCCCCeEEEEe-cCChHHHHHHHHHH
Q 018172 310 -RIMARGGRRFGADAKYARVSM-LSREEIFNIFLERL 344 (360)
Q Consensus 310 -gI~~~pg~~f~~~~~~~R~s~-~~~~e~~~~~~~~l 344 (360)
||.++||..|+. ++++|+++ +.++|++++++++|
T Consensus 328 ~gi~v~pg~~~~~-~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 328 YGILVRPGSYFGV-PGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp HTEEEEEGGGGTS-TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred CCEEEEecCCCCC-CCEEEEEeccCCHHHHHHHHhhC
Confidence 999999999997 88999999 44999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=292.61 Aligned_cols=286 Identities=19% Similarity=0.216 Sum_probs=229.9
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
...|++ .|. ++||++++++++. .+.++|++|+|+++++..++..++++||+ |+++.|+|..+..+
T Consensus 57 ~~~Y~~-~~~-----~~lr~~ia~~~~~-----~~~~~I~~t~G~~~~i~~~~~~~~~~gd~----vlv~~P~y~~~~~~ 121 (356)
T PRK04870 57 LNRYPD-PRA-----AALKAALRAAMGV-----PAGADVLLGNGSDELIQLLALACAKPGAT----VLAPEPGFVMYRMS 121 (356)
T ss_pred cccCCC-CCH-----HHHHHHHHHHhCc-----CCCCcEEEcCCHHHHHHHHHHHhcCCCCE----EEECCCCHHHHHHH
Confidence 345776 455 9999999999975 12348999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc--------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC---C
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK--------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY---T 170 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~--------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~---~ 170 (360)
++..|++++.++++.+ +++. +.+++++++++||||||.+++ +.+.++++..+.++|+||+|.+... .
T Consensus 122 ~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~ 201 (356)
T PRK04870 122 AKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWL 201 (356)
T ss_pred HHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchH
Confidence 9999999999987643 2221 247899999999999999999 4555555544889999999974322 1
Q ss_pred cCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHH
Q 018172 171 PITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRL 250 (360)
Q Consensus 171 ~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (360)
+.....++++++.|||| ++++|+|+||+++ ++++++.+...+. .++.+.++|.++..+++ +. .++++.++.
T Consensus 202 ~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~-~~~~i~~~~~~~~--~~~~~~~~q~~a~~~l~---~~--~~~~~~~~~ 272 (356)
T PRK04870 202 PRLARFPNLLVMRTVSK-LGLAGLRLGYLAG-HPAWIAELDKVRP--PYNVNVLTQATALFALE---HV--DVLDAQAAQ 272 (356)
T ss_pred HHHhhCCCEEEEecchh-hhhHHHhhhhhhC-CHHHHHHHHHccC--CCcCCHHHHHHHHHHHh---CH--HHHHHHHHH
Confidence 12234568999999999 8999999999998 8999999887653 45788899988888776 21 568889999
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCC-CCCeEEEE
Q 018172 251 MSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGA-DAKYARVS 329 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~-~~~~~R~s 329 (360)
++++++.+.+.|++++++.+. + ..++|+|+++++...+.+.|.++||.++||..|+. .++++|+|
T Consensus 273 ~~~~~~~l~~~L~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis 338 (356)
T PRK04870 273 LRAERTRLAAALAALPGVTVF-P-------------SAANFILVRVPDAAAVFDGLKTRGVLVKNLSGMHPLLANCLRVT 338 (356)
T ss_pred HHHHHHHHHHHHHhCCCcEEC-C-------------CCCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCCCeEEEe
Confidence 999999999999988655432 2 23348899988666777888999999999998853 47899999
Q ss_pred ecCChHHHHHHHHHHHHHH
Q 018172 330 MLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 330 ~~~~~e~~~~~~~~l~~~~ 348 (360)
++ +++++++++++|.+++
T Consensus 339 ~~-~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 339 VG-TPEENAQFLAALKAAL 356 (356)
T ss_pred CC-CHHHHHHHHHHHHHhC
Confidence 95 6788899999998764
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=290.14 Aligned_cols=300 Identities=16% Similarity=0.174 Sum_probs=225.7
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhhcCCCCCC--CCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSD--GRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY 100 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~--~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~ 100 (360)
....|+++.|. ++||+++++++...+....+ .++|++|+|+++++.+++..++++||. |++++|+|+.+
T Consensus 36 ~~~~Y~~~~G~-----~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~----Vlv~~P~y~~~ 106 (388)
T PRK08637 36 EIFPYAPPQGI-----PELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDT----VLLPDHNWGNY 106 (388)
T ss_pred cccCCCCCCCC-----HHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCCE----EEEcCCCCccH
Confidence 44579999998 99999999986544433332 257999999999999999999999998 99999999999
Q ss_pred HHHHH-HhCCeeeeecC--CccccccC-----------CCeeEEEEcCCCCCCcccchH----HHHHHhhh-----cCcE
Q 018172 101 PAETD-YLRSGLYKWDG--DANTFDKN-----------NGAYIEVVNSPNNPDGTIREA----VLAKVNRS-----AEGK 157 (360)
Q Consensus 101 ~~~~~-~~g~~~~~~~~--~~~~~~~~-----------~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~-----~~~~ 157 (360)
...+. ..|++++.+++ +.++++.+ +.++++++++||||||.++++ .+.++|++ ++++
T Consensus 107 ~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~ 186 (388)
T PRK08637 107 KLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVV 186 (388)
T ss_pred HHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Confidence 98764 57999999987 44455331 345567889999999999993 34444442 8999
Q ss_pred EEEeecccCCCC-----CcC----CCCCCcc--EEEeccccccCCCCceEEEEeec-----CHHHHHHHHHH----Hhhc
Q 018172 158 LIHDLAYYWPQY-----TPI----TGAADHD--IMLFTLSKCTGHAGSRIGWALVK-----DTEVARKMTRF----IELG 217 (360)
Q Consensus 158 li~D~ay~~~~~-----~~~----~~~~~~~--i~~~S~sK~~~~~G~r~G~~~~~-----~~~~~~~l~~~----~~~~ 217 (360)
+|+||+|.+..+ .++ .+..+++ ++++|+||.+++||+|+||++++ ++++++.+.+. ....
T Consensus 187 iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 266 (388)
T PRK08637 187 AVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSN 266 (388)
T ss_pred EEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcc
Confidence 999999985322 111 1334565 44569999999999999999863 36888777642 1223
Q ss_pred cccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC---CcccCCCCCcccccccccCCCCCCcccc
Q 018172 218 SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG---VFGLPEYPLEYCNFTGKFTNSHPGFAWL 294 (360)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (360)
..+.|.+.|.++.++++ .+.+..++.+.++.++++++.+.+.|+.++ ++.+..|.+++ |+|+
T Consensus 267 ~~~~s~~~q~a~~~~l~--~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~-------------~~~~ 331 (388)
T PRK08637 267 ISNGPHPSQSAVLRALN--SPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGY-------------FMCL 331 (388)
T ss_pred cCCCCcHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceE-------------EEEe
Confidence 45789999999999887 334456677778889999999999998763 34444444444 8899
Q ss_pred cCCc--hHHH-HHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHHhch
Q 018172 295 ESKE--DEDC-EKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 295 ~~~~--~~~~-~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~ 351 (360)
++++ ...+ ..+++++||.+.+. .++++||+++. +++++++++++|.++++..
T Consensus 332 ~l~~~~~~~l~~~l~~~~gv~~~~~-----~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 332 KLKGVDAEELRVHLLEKYGIGTIAL-----NETDLRIAFSCVEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred cCChHHHHHHHHHHhhhcceEEEec-----cCCceEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 8874 2444 44456789988742 25789999987 8999999999999998643
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=290.99 Aligned_cols=293 Identities=15% Similarity=0.163 Sum_probs=217.9
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcE-----EEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCC
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHI-----VIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i-----~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~ 98 (360)
..+|+++.|. ++||+++++++...+....++++| +.++|+.+ +...+..++++||+ |++++|+|+
T Consensus 84 ~~~Y~~~~G~-----~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~-l~~~~~~~~~pGd~----Vlv~~P~y~ 153 (423)
T PLN02397 84 NKEYLPIEGL-----AEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLR-LGAEFLARFYPGST----IYIPNPTWG 153 (423)
T ss_pred CCCCCCcCCC-----HHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHH-HHHHHHHHhCCCCE----EEEeCCCch
Confidence 3469999998 999999999875444333333343 33343333 34444455579998 999999999
Q ss_pred CcHHHHHHhCCeeeeecC-Ccc--cccc----------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEe
Q 018172 99 QYPAETDYLRSGLYKWDG-DAN--TFDK----------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHD 161 (360)
Q Consensus 99 ~~~~~~~~~g~~~~~~~~-~~~--~~~~----------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D 161 (360)
.|..+++..|++++.+++ +.+ +++. .++++++++++||||||.++++ .+.++|+++++++|+|
T Consensus 154 ~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~D 233 (423)
T PLN02397 154 NHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFD 233 (423)
T ss_pred hHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 999999999999999876 222 2221 2467889999999999999993 4456788899999999
Q ss_pred ecccCCCCC-------cC---CCCCCccEEEeccccccCCCCceEEEEe--ecCHHHHH----HHHHHHhhccccCChHH
Q 018172 162 LAYYWPQYT-------PI---TGAADHDIMLFTLSKCTGHAGSRIGWAL--VKDTEVAR----KMTRFIELGSIGVSKES 225 (360)
Q Consensus 162 ~ay~~~~~~-------~~---~~~~~~~i~~~S~sK~~~~~G~r~G~~~--~~~~~~~~----~l~~~~~~~~~~~~~~~ 225 (360)
|+|.+..+. +. ....+++++++||||+|+++|||+||++ ++++++++ .+.+.......+.+.+.
T Consensus 234 e~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (423)
T PLN02397 234 SAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHG 313 (423)
T ss_pred cccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHH
Confidence 999854321 11 1233579999999999999999999985 43565544 34444444455778899
Q ss_pred HHHHHHHhccc--CCCchhHHHHHHHHHHHHHHHHHHHHHhcCC---cccCCCCCcccccccccCCCCCCcccccCCchH
Q 018172 226 QLRAAKILGIV--SDDYPNFFEYGRRLMSERWNMLRQVIRQSGV---FGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDE 300 (360)
Q Consensus 226 ~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (360)
|.++.++|+.. .+.+.++++++++.++++|+.+.+.|++++. +.+..|+|++ |+|+++++ +
T Consensus 314 q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~-------------fl~~~l~~-~ 379 (423)
T PLN02397 314 ASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGM-------------FSFTGLNK-E 379 (423)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceE-------------EEecCCCH-H
Confidence 99988888621 0111244788999999999999999999841 4555677776 88888864 6
Q ss_pred HHHHHHHhhCeeeeCCCCCCCCCCeEEEEec-CChHHHHHHHHHHHHHHh
Q 018172 301 DCEKLLRAERIMARGGRRFGADAKYARVSML-SREEIFNIFLERLSAIQG 349 (360)
Q Consensus 301 ~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~-~~~e~~~~~~~~l~~~~~ 349 (360)
++.+++.++||.+.+ .+ |++++ .+++.+++++++|+++++
T Consensus 380 ~~~~Ll~~~~V~v~~-------~~--Ri~~~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 380 QVDRMTKEYHIYMTR-------DG--RISMAGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred HHHHHHHhCCEEECC-------CC--eEEEeeCCHHHHHHHHHHHHHHHh
Confidence 888888999999973 22 99998 499999999999999985
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=285.86 Aligned_cols=285 Identities=20% Similarity=0.257 Sum_probs=229.1
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|++..+ .+||++++++++. ++++|++|+|+++++..++..++++||+ |++++|+|..+...+
T Consensus 62 ~~y~~~~~------~~lr~~ia~~~~~------~~~~i~~t~G~~~~l~~~~~~l~~~gd~----vl~~~p~y~~~~~~~ 125 (367)
T PRK02731 62 HRYPDGSG------FELKAALAEKFGV------DPERIILGNGSDEILELLARAYLGPGDE----VIYSEHGFAVYPIAA 125 (367)
T ss_pred cCCCCCcH------HHHHHHHHHHhCc------CHHHEEEcCCHHHHHHHHHHHhcCCCCE----EEEecCCHHHHHHHH
Confidence 45665442 7999999999975 5578999999999999999999999998 999999999999888
Q ss_pred HHhCCeeeeecCCcccccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhh--cCcEEEEeecccCCCC-----
Q 018172 105 DYLRSGLYKWDGDANTFDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRS--AEGKLIHDLAYYWPQY----- 169 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~--~~~~li~D~ay~~~~~----- 169 (360)
+..|++++.++.+..+++. ++++++|++++||||||.+++ +.+.++++. +++++|+|++|.+..+
T Consensus 126 ~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~ 205 (367)
T PRK02731 126 QAVGAKPVEVPAKDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYE 205 (367)
T ss_pred HHcCCeEEEecccCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcc
Confidence 9999999998875433322 367899999999999999998 455555543 4899999999974221
Q ss_pred CcC--CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 170 TPI--TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 170 ~~~--~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
.++ ....+++++++||||.||++|+|+||+++ ++++++.+.+... .++.+.++|.++.++++ + ..++++.
T Consensus 206 ~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~-~~~~~~~l~~~~~--~~~~~~~~~~~a~~~l~---~--~~~~~~~ 277 (367)
T PRK02731 206 DGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIA-PPEIIDALNRVRQ--PFNVNSLALAAAVAALD---D--DAFVEKS 277 (367)
T ss_pred cHHHHHhhcCCEEEEeeehHhhcCcccceeeeeC-CHHHHHHHHHccC--CCCCCHHHHHHHHHHhC---C--HHHHHHH
Confidence 111 13456899999999999999999999998 8999999987654 35678899999988886 3 2788999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCCCCCCCCC
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGGRRFGADAK 324 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~~f~~~~~ 324 (360)
++.++++++.+.+.|+++ ++.+. + +.++|+|+++++ ...+.+.|.++||.++|+..|+ .++
T Consensus 278 ~~~~~~~~~~l~~~L~~~-g~~~~-~-------------~~g~~~~i~~~~~~~~~~~~~~L~~~gI~v~~~~~~~-~~~ 341 (367)
T PRK02731 278 RALNAEGMAWLTEFLAEL-GLEYI-P-------------SVGNFILVDFDDGKDAAEAYQALLKRGVIVRPVAGYG-LPN 341 (367)
T ss_pred HHHHHHHHHHHHHHHHHC-CCccC-C-------------CCceEEEEECCCCCCHHHHHHHHHHCCEEEEeCCCCC-CCC
Confidence 999999999999999988 34433 2 223478888843 2667778888999999998887 367
Q ss_pred eEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 325 YARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 325 ~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
++|++++ +.+++++++++|+++++.
T Consensus 342 ~iRis~~-~~~e~~~l~~aL~~~~~~ 366 (367)
T PRK02731 342 ALRITIG-TEEENRRFLAALKEFLAA 366 (367)
T ss_pred eEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 9999995 678899999999998753
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=285.25 Aligned_cols=289 Identities=17% Similarity=0.184 Sum_probs=228.4
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|++ .|. ++||+++++++... |..++++ +|++|+|+++++..++..++++||. |+++.|+|+.+..
T Consensus 59 ~~~Y~~-~g~-----~~lr~aia~~~~~~~~~~~~~~-~I~it~G~~~~l~~~~~~~~~~gd~----v~v~~P~y~~~~~ 127 (368)
T PRK03317 59 LNRYPD-RDA-----VALRADLAAYLTAQTGVGLTVE-NVWAANGSNEILQQLLQAFGGPGRT----ALGFVPSYSMHPI 127 (368)
T ss_pred hccCCC-Cch-----HHHHHHHHHHhhhhccCCCChh-hEEECCCHHHHHHHHHHHhcCCCCE----EEEeCCChHHHHH
Confidence 356765 355 99999999998644 6666664 8999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCc-ccccc--------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC--
Q 018172 103 ETDYLRSGLYKWDGDA-NTFDK--------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT-- 170 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~-~~~~~--------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~-- 170 (360)
.++..|.+++.++.+. .+++. ..+++++++++||||||.+++ +.+.++++..++++|+||+|.+....
T Consensus 128 ~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~ 207 (368)
T PRK03317 128 IARGTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGT 207 (368)
T ss_pred HHHhcCCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCC
Confidence 9999999998887542 23322 246889999999999999999 56777777778999999999853211
Q ss_pred -c---CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHH
Q 018172 171 -P---ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEY 246 (360)
Q Consensus 171 -~---~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 246 (360)
+ ......++++++||||+||++|+|+||+++ ++++++.+...+ ..++.+++.|.++.++++.. ..+.+
T Consensus 208 ~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~-~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~-----~~~~~ 279 (368)
T PRK03317 208 PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAA-APAVVDALRLVR--LPYHLSAVTQAAARAALRHA-----DELLA 279 (368)
T ss_pred cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhC-CHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCH-----HHHHH
Confidence 1 112345789999999999999999999998 899999998765 35688899999998888731 34445
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeE
Q 018172 247 GRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYA 326 (360)
Q Consensus 247 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~ 326 (360)
.++.++++++.+.+.|+++ ++.+..+.+.+ ++|.++++...+.+.|.++||.++++ +. ++++
T Consensus 280 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~Gv~v~~~---~~-~~~i 341 (368)
T PRK03317 280 SVAALRAERDRVVAWLREL-GLRVAPSDANF-------------VLFGRFADRHAVWQGLLDRGVLIRDV---GI-PGWL 341 (368)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCEeCCCCCcE-------------EEEeccCCHHHHHHHHHHCCEEEEeC---CC-CCeE
Confidence 5677899999999999987 44544444443 45556555567777888899999873 32 6799
Q ss_pred EEEecCChHHHHHHHHHHHHHHhc
Q 018172 327 RVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 327 R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
|++++ +++++++++++|++++..
T Consensus 342 Ri~~~-~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 342 RVTIG-TPEENDAFLAALAEVLAT 364 (368)
T ss_pred EEecC-CHHHHHHHHHHHHHHHHH
Confidence 99984 678899999999998754
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=305.46 Aligned_cols=302 Identities=15% Similarity=0.182 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
+++|+++++++.. +|.+.+++++|++|+|+++++..++.+++++||. |+++.|+|+.|...++..|++++.++++
T Consensus 733 pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~----VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~ 808 (1082)
T PLN02672 733 TDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGT----LCFPAGSNGTYVSAAKFLKANFRRIPTK 808 (1082)
T ss_pred hHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCE----EEEeCCChHHHHHHHHHcCCEEEEEecc
Confidence 7889999998765 5888877678999999999999999999999998 9999999999999999999999999986
Q ss_pred c-cccccC---------C-CeeEEEEcCCC-CCCcccchH----HHHHHhhhcCcEEEEeecccCCCCC-------cCC-
Q 018172 118 A-NTFDKN---------N-GAYIEVVNSPN-NPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQYT-------PIT- 173 (360)
Q Consensus 118 ~-~~~~~~---------~-~~~~i~~~~p~-NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~~-------~~~- 173 (360)
. +++..+ + ++++|++++|| ||||.++++ .+.++|++++++||+||+|.+-.+. ++.
T Consensus 809 ~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s 888 (1082)
T PLN02672 809 SSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKS 888 (1082)
T ss_pred cccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhh
Confidence 3 455542 2 34689999997 999999993 4556788899999999999832211 111
Q ss_pred -----C---CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhccc---CCCchh
Q 018172 174 -----G---AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIV---SDDYPN 242 (360)
Q Consensus 174 -----~---~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~ 242 (360)
+ ...++++++||||.|+++|+|+||++++++++++.+.+.... .+.+...|.++.+++... ...+..
T Consensus 889 ~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~--s~~~~~~q~Aaaaalall~~~~~~~~~ 966 (1082)
T PLN02672 889 ILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGL--SRPHSTLKYTIKKLLGLKNQKSSDLLD 966 (1082)
T ss_pred HHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhh--cCCCcHHHHHHHHHHHHHhccCcHHHH
Confidence 1 123789999999999999999999999556699999876432 233345666665555322 123457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--------ch-HHHHHHHHhhCeee
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------ED-EDCEKLLRAERIMA 313 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~l~~~gI~~ 313 (360)
++.+.++.++++++++.+.|+++ ++.+..|.|+++.|.+.... ...+.-.+.+ +. +....++++.||.+
T Consensus 967 ~l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~~PeGGFfLwl~l~~~-l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV 1044 (1082)
T PLN02672 967 GVAEQKKILKSRAERLKETLEAC-GWDVLEPQGGISMVAKPSAY-LGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCI 1044 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCeEecCCcEEEEEEEcccc-ccccccccccccccccCCCHHHHHHHHHHcCCEEE
Confidence 78889999999999999999998 46677777887444311000 0000000111 22 44555666679999
Q ss_pred eCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 314 RGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 314 ~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
.||..|+. ++|+||+++.+++++++++++|+++++
T Consensus 1045 ~PGs~FG~-~g~~RIsfa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1045 NSSSWTGI-PGYCRFSFALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred ecCcccCC-CCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 99998885 789999998899999999999998764
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=264.18 Aligned_cols=292 Identities=20% Similarity=0.255 Sum_probs=245.6
Q ss_pred cHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 38 VPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 38 ~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
..++-+++++|.. +++..+.++ .|++++|.-.++..++..+.++||. |++..|.|++.....+..|.++...|+
T Consensus 62 ~~~~~~ai~~w~~~r~~~~i~~e-~i~~~p~VVpgi~~~I~~~T~~gd~----Vvi~tPvY~PF~~~i~~n~R~~i~~pL 136 (388)
T COG1168 62 SDELYAAIAHWFKQRHQWEIKPE-WIVFVPGVVPGISLAIRALTKPGDG----VVIQTPVYPPFYNAIKLNGRKVIENPL 136 (388)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcc-eEEEcCcchHhHHHHHHHhCcCCCe----eEecCCCchHHHHHHhhcCcEEEeccc
Confidence 3889999999865 667777776 6999999999999999999999999 999999999999999999999998775
Q ss_pred C--cccc-------cc---CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCC------CCCcC--
Q 018172 117 D--ANTF-------DK---NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWP------QYTPI-- 172 (360)
Q Consensus 117 ~--~~~~-------~~---~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~------~~~~~-- 172 (360)
- ...+ +. +++.|+.++||||||||.++++ .+.++|++||+++|+||+|++- +++..
T Consensus 137 ~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~l 216 (388)
T COG1168 137 VEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASL 216 (388)
T ss_pred cccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhc
Confidence 3 2233 22 4567999999999999999994 3457899999999999999952 22222
Q ss_pred -CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHH-HHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHH
Q 018172 173 -TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARK-MTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRL 250 (360)
Q Consensus 173 -~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (360)
....++.+.+.|.||+|.++|+++++++.+++++.++ +++.......++|.++..+..++.+ .+. .|++++.+.
T Consensus 217 s~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~--~G~--~WLd~L~~y 292 (388)
T COG1168 217 SERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYN--QGE--PWLDELLEY 292 (388)
T ss_pred ChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH--hch--HHHHHHHHH
Confidence 1245788999999999999999999999988888555 4555556677889999999998888 344 999999999
Q ss_pred HHHHHHHHHHHHHhc-CCcccCCCCCcccccccccCCCCCCcccccCCch-----HHHHHHHHhhCeeeeCCCCCCC-CC
Q 018172 251 MSERWNMLRQVIRQS-GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-----EDCEKLLRAERIMARGGRRFGA-DA 323 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~gI~~~pg~~f~~-~~ 323 (360)
++.+++++.+.++++ |++.+..|+|.+ .+|+++..- +....++.+.+|.+.+|+.||. +.
T Consensus 293 l~~N~~~~~~~l~~~~P~v~v~~p~gTY-------------L~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~ 359 (388)
T COG1168 293 LKDNRDYVADFLNKHLPGVKVTEPQGTY-------------LAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGS 359 (388)
T ss_pred HHHHHHHHHHHHHhhCCCcEEecCCCce-------------eeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCC
Confidence 999999999999776 899999999887 678888542 5556677777999999999987 67
Q ss_pred CeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 324 KYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 324 ~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
+++|++++.+.+.+++++++|+..+...
T Consensus 360 gf~RlN~acpr~~L~eal~ri~~al~~~ 387 (388)
T COG1168 360 GFVRLNFACPRAILEEALERLKRALKKR 387 (388)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999887653
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=265.19 Aligned_cols=325 Identities=18% Similarity=0.296 Sum_probs=252.9
Q ss_pred HHHHHHhcCCceeeecC---CcccccccCCCCccccccHHHHHHHHHHHhh-cCC--CCCCCCcEEEcCChHHHHHHHHH
Q 018172 4 EAFWRKLGDKCTMVISG---SDLMSYLSDMGNVCWFLVPELAEAINNLHHV-VDN--AVSDGRHIVIGTGSTQLYQAALY 77 (360)
Q Consensus 4 ~~~~~~~~~~~~~~~~~---~~~~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~--~~~~~~~i~~t~G~t~~l~~~~~ 77 (360)
+.|.++..+.......+ .+.+..|++-.|. +++|+++|+|.+. +|. ..+|+ ++++|+|+|.++..+..
T Consensus 91 ~~wl~k~~~~~~~~~eg~~~f~~la~fqdy~Gl-----~~frqa~A~Fm~~~r~~~v~fdP~-~~Vv~~G~T~ane~l~f 164 (471)
T KOG0256|consen 91 ESWLSKNPEASNCTREGQSSFDELAMFQDYHGL-----PSFRQAVAEFMERARGNRVKFDPE-RVVVTNGATSANETLMF 164 (471)
T ss_pred HHHHHhChhhhhcccccccchhhHhhcccccCc-----hHHHHHHHHHHHHHhCCCCccCcc-ceEEecccchhhHHHHH
Confidence 45666644433322222 2344669999998 9999999999653 333 35554 89999999999999999
Q ss_pred hhcCCCCCCCceEEEeCCCCCCcHHHHHH-hCCeeeeecCCc-ccccc---------------CCCeeEEEEcCCCCCCc
Q 018172 78 ALSSPGGPEPISVVSAAPYYSQYPAETDY-LRSGLYKWDGDA-NTFDK---------------NNGAYIEVVNSPNNPDG 140 (360)
Q Consensus 78 ~l~~~gd~~~~~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~-~~~~~---------------~~~~~~i~~~~p~NPtG 140 (360)
.|.+|||. .++|.|.|+...+-++. .|++++++..+. +++.. +-+.|.|+++||+||.|
T Consensus 165 cLadpgda----fLvPtPyY~gfdrdl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG 240 (471)
T KOG0256|consen 165 CLADPGDA----FLVPTPYYPGFDRDLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLG 240 (471)
T ss_pred HhcCCCce----eeecCCCCCcccccceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCC
Confidence 99999999 99999999999877766 489999888653 35443 35889999999999999
Q ss_pred ccchH----HHHHHhhhcCcEEEEeecccC-----CCCCcCC------C-CCCccEEEeccccccCCCCceEEEEeecCH
Q 018172 141 TIREA----VLAKVNRSAEGKLIHDLAYYW-----PQYTPIT------G-AADHDIMLFTLSKCTGHAGSRIGWALVKDT 204 (360)
Q Consensus 141 ~~~~~----~~~~~~~~~~~~li~D~ay~~-----~~~~~~~------~-~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~ 204 (360)
.++++ .+..++.++++.+|+||+|+. ..+.++. . ..+++-++.|+||-||+||+|+|.|.+.++
T Consensus 241 ~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne 320 (471)
T KOG0256|consen 241 TTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNE 320 (471)
T ss_pred CccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecCh
Confidence 99994 234567779999999999984 2233322 1 567888999999999999999999999889
Q ss_pred HHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCccccccccc
Q 018172 205 EVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKF 284 (360)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 284 (360)
+++....++..+ ...++..|..++.+|.. ..-.+.++++.+++++.+..++.+.|++++ +.+.+..++
T Consensus 321 ~VvsaA~kmssf--~~vSs~tQ~~la~LLSD-~~f~~~yl~en~~Rl~~rh~~~~~gLk~lg-I~cl~s~AG-------- 388 (471)
T KOG0256|consen 321 DVVSAATKMSSF--GLVSSQTQYLLASLLSD-EEFTREYLRENNKRLRIRHRYIVEGLKALG-IPCLKSNAG-------- 388 (471)
T ss_pred HHHHHHHHHhhc--cCCcHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHhhHHhcC-CceeecCCe--------
Confidence 999999998765 46788999999998873 111358999999999999999999999995 444444333
Q ss_pred CCCCCCcccccCCc--------h--HHHHHHHHhhCeeeeCCCCCCC-CCCeEEEEecC-ChHHHHHHHHHHHHHHhchh
Q 018172 285 TNSHPGFAWLESKE--------D--EDCEKLLRAERIMARGGRRFGA-DAKYARVSMLS-REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 285 ~~~~~~~~~~~~~~--------~--~~~~~~l~~~gI~~~pg~~f~~-~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~~ 352 (360)
.|+|+++.. + +...+.+.+-++.+.||+.|.+ .+||+|++|+. .++.++-++++|++++....
T Consensus 389 -----lF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~~~~ 463 (471)
T KOG0256|consen 389 -----LFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLDSQV 463 (471)
T ss_pred -----eEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHHhhh
Confidence 378888742 1 3445556555999999999965 79999999988 67777779999999998665
Q ss_pred ccC
Q 018172 353 SNG 355 (360)
Q Consensus 353 ~~~ 355 (360)
...
T Consensus 464 ~~l 466 (471)
T KOG0256|consen 464 QPL 466 (471)
T ss_pred ccc
Confidence 443
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=284.64 Aligned_cols=274 Identities=23% Similarity=0.298 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEE-cCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVI-GTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~-t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
+++|++++++++. ++++|++ |+|+++++..++..++++||+ |++++|+|+.+...++..|++++.++.+
T Consensus 72 ~~lr~~ia~~~~~------~~~~i~~~~~Ga~~~i~~~~~~~~~~gd~----vlv~~p~y~~~~~~~~~~g~~~~~~~~~ 141 (361)
T PRK00950 72 PELREALSKYTGV------PVENIIVGGDGMDEVIDTLMRTFIDPGDE----VIIPTPTFSYYEISAKAHGAKPVYAKRE 141 (361)
T ss_pred HHHHHHHHHHhCC------CHHHEEEeCCCHHHHHHHHHHHhcCCCCE----EEEcCCChHHHHHHHHHcCCEEEEeecC
Confidence 8999999999975 5568999 799999999999999999998 9999999999999999999999988755
Q ss_pred cc-cccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC---CCcCCCCCCccEEEecc
Q 018172 118 AN-TFDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ---YTPITGAADHDIMLFTL 185 (360)
Q Consensus 118 ~~-~~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~---~~~~~~~~~~~i~~~S~ 185 (360)
.+ +++. +++++++++++||||||.+++ +.+.++++++++++|+|++|.+.. ..++....+++++++||
T Consensus 142 ~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~ 221 (361)
T PRK00950 142 EDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTF 221 (361)
T ss_pred CCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEee
Confidence 44 2221 357899999999999999999 567778888999999999998532 12222345688999999
Q ss_pred ccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS 265 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (360)
||+||++|+|+||+++ ++++++.+.+... ..+.+.+.|.++.+++. +. +++++.++.++++++.+.+.|+ +
T Consensus 222 SK~~g~~GlRiG~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~a~~~l~---~~--~~~~~~~~~~~~~r~~l~~~l~-~ 292 (361)
T PRK00950 222 SKVFGLAGLRIGYGFV-PEWLIDYYMRAKT--PFSLTRLSQAAAIAALS---DK--EYIEKSIEHGIKSREYLYNELP-F 292 (361)
T ss_pred hHhhcCchhhcchhcC-CHHHHHHHHHhcC--CCCCCHHHHHHHHHHhc---CH--HHHHHHHHHHHHHHHHHHhhcC-e
Confidence 9999999999999998 8999999887764 34577899988888776 32 7788889999999998888776 2
Q ss_pred CCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCCCCC-CCCeEEEEecCChHHHHHHHH
Q 018172 266 GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRRFGA-DAKYARVSMLSREEIFNIFLE 342 (360)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~ 342 (360)
.+ .+ +.++|+|++++. ...+.+.|.++||.++||..|+. .++++|+|++ ++++++++++
T Consensus 293 ---~~-~~-------------~~~~~i~~~~~~~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~-~~~~~~~l~~ 354 (361)
T PRK00950 293 ---KV-YP-------------SEANFVLVDVTPMTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG-TFEENERFLE 354 (361)
T ss_pred ---eE-CC-------------CcceEEEEECCCCCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC-CHHHHHHHHH
Confidence 11 12 233478888753 36677777788999999988854 4679999995 6778999999
Q ss_pred HHHHHHh
Q 018172 343 RLSAIQG 349 (360)
Q Consensus 343 ~l~~~~~ 349 (360)
+|+++++
T Consensus 355 ~L~~il~ 361 (361)
T PRK00950 355 ILKEIVE 361 (361)
T ss_pred HHHHHhC
Confidence 9998763
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=284.62 Aligned_cols=243 Identities=14% Similarity=0.127 Sum_probs=198.2
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhc-CCCCCCCceEEEeCCCCCCcH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALS-SPGGPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~-~~gd~~~~~vl~~~p~~~~~~ 101 (360)
..+|+++.|. ++||++++++++.+ |..++++ +|++|+|+++++..++..++ ++||. |++++|+|+.|.
T Consensus 100 ~~~Y~~~~G~-----~~LR~aia~~~~~~~g~~~~~~-~I~it~Ga~~al~~~~~~l~~~pGd~----Vli~~P~Y~~y~ 169 (407)
T PLN02368 100 LGAYSDSRGL-----PGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQILNAVIRGEKDG----VLVPVPQYPLYS 169 (407)
T ss_pred CCCCCCCCCC-----HHHHHHHHHHHHHhcCCCCChh-hEEEcccHHHHHHHHHHHHcCCCCCE----EEEeCCCCccHH
Confidence 5679999998 99999999998654 7777664 89999999999999999987 79998 999999999999
Q ss_pred HHHHHhCCeeeeecCCcc-cccc---------CC------CeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEe
Q 018172 102 AETDYLRSGLYKWDGDAN-TFDK---------NN------GAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHD 161 (360)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~-~~~~---------~~------~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D 161 (360)
.+++..|++++.++++.+ ++.. ++ ++++++++|||||||.++++ .+.++|++++++||+|
T Consensus 170 ~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~D 249 (407)
T PLN02368 170 ATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGD 249 (407)
T ss_pred HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 999999999999887642 2221 11 68999999999999999993 4556788899999999
Q ss_pred ecccCCCC------CcCC----C------CCCccEEEecccccc-CCCCceEEEEee--cCHHHHHHHHHHHhhccccCC
Q 018172 162 LAYYWPQY------TPIT----G------AADHDIMLFTLSKCT-GHAGSRIGWALV--KDTEVARKMTRFIELGSIGVS 222 (360)
Q Consensus 162 ~ay~~~~~------~~~~----~------~~~~~i~~~S~sK~~-~~~G~r~G~~~~--~~~~~~~~l~~~~~~~~~~~~ 222 (360)
|+|.+..+ .++. + ..+++++++||||+| +++|||+||+++ .++++++.+.+... ..++.|
T Consensus 250 E~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~-~~~~~~ 328 (407)
T PLN02368 250 EVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVAS-IALSPN 328 (407)
T ss_pred ccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhc-ccCCCC
Confidence 99985322 1211 1 134899999999998 899999999994 37899999988753 467889
Q ss_pred hHHHHHHHHHhcccC---CCc---hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcc
Q 018172 223 KESQLRAAKILGIVS---DDY---PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEY 277 (360)
Q Consensus 223 ~~~~~~~~~~l~~~~---~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 277 (360)
.++|.++.++++... ..+ .++++++++.+++||+.+.+.|++++++.+..|+|++
T Consensus 329 ~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gaf 389 (407)
T PLN02368 329 VSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAM 389 (407)
T ss_pred cHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeee
Confidence 999999999987421 111 2334567899999999999999999888888898888
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=279.30 Aligned_cols=281 Identities=19% Similarity=0.231 Sum_probs=225.5
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...+|+++.+ +++|+.++++++. ++++|++|+|+++++..+... +.+| . |++++|+|..+..
T Consensus 40 ~~~~y~~~~~------~~lr~~la~~~~~------~~~~i~~t~G~~~~i~~~~~~-l~~g-~----vl~~~p~y~~~~~ 101 (330)
T TIGR01140 40 AWARYPDPEY------DELRAAAAAYYGL------PAASVLPVNGAQEAIYLLPRL-LAPG-R----VLVLAPTYSEYAR 101 (330)
T ss_pred HHhhCCCccH------HHHHHHHHHHhCC------ChhhEEECCCHHHHHHHHHHH-hCCC-e----EEEeCCCcHHHHH
Confidence 4456876663 8999999999874 456999999999999997666 5666 5 9999999999999
Q ss_pred HHHHhCCeeeeecCCccccccC-CCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCCC-cCC---
Q 018172 103 ETDYLRSGLYKWDGDANTFDKN-NGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQYT-PIT--- 173 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~~~~~~-~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~~-~~~--- 173 (360)
+++..|.+++.++ |.+.+... .+++++++++||||||.+++. .+.++|+++|+++|+|++|.+.... +..
T Consensus 102 ~~~~~g~~~~~~~-d~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~ 180 (330)
T TIGR01140 102 AWRAAGHEVVELP-DLDRLPAALEELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQA 180 (330)
T ss_pred HHHHcCCEEEEeC-CHHHHHhhcccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHh
Confidence 9999999999998 65555432 357899999999999999982 3456777899999999999853222 221
Q ss_pred CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHH
Q 018172 174 GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 174 ~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
+..+++++++||||.||++|+|+||+++ ++++++.+..... ..+.+.++|.++..+++ +. .+.++.++++++
T Consensus 181 ~~~~~~i~~~S~SK~~g~~G~R~G~i~~-~~~~~~~l~~~~~--~~~~s~~~q~~~~~~l~---~~--~~~~~~~~~~~~ 252 (330)
T TIGR01140 181 ARFPGLVVLRSLTKFFGLAGLRLGFVVA-HPALLARLREALG--PWTVNGPARAAGRAALA---DT--AWQAATRARLAA 252 (330)
T ss_pred ccCCCEEEEEecchhhcCchhhhhheeC-CHHHHHHHHhcCC--CCCchHHHHHHHHHHHh---ch--HHHHHHHHHHHH
Confidence 2357899999999999999999999999 7889999887754 45678899999988887 32 677888999999
Q ss_pred HHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCC-CCCeEEEEecC
Q 018172 254 RWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGA-DAKYARVSMLS 332 (360)
Q Consensus 254 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~-~~~~~R~s~~~ 332 (360)
+++.+.+.|++++.+... + +.++|+|+++++..++.+.|.++||.++||..|+. ..+++|++++.
T Consensus 253 ~~~~l~~~L~~~~~~~~~-~-------------~~~~f~~~~~~~~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~ 318 (330)
T TIGR01140 253 ERARLAALLARLGGLEVV-G-------------GTALFLLVRTPDAAALHEALARRGILIRDFDNFPGLDPRYLRFALPT 318 (330)
T ss_pred HHHHHHHHHHhCCCceEC-C-------------CCCeEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEecC
Confidence 999999999998654332 2 23348999988776677777889999999999953 56799999977
Q ss_pred ChHHHHHHHHHHH
Q 018172 333 REEIFNIFLERLS 345 (360)
Q Consensus 333 ~~e~~~~~~~~l~ 345 (360)
+.++ ++++++|+
T Consensus 319 ~~~~-~~~~~~l~ 330 (330)
T TIGR01140 319 DEEN-DRLEEALA 330 (330)
T ss_pred HHHH-HHHHHhhC
Confidence 6666 88888763
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=278.39 Aligned_cols=275 Identities=21% Similarity=0.237 Sum_probs=216.8
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..+|++ .|. ++||++++++++. ++++|++|+|+++++..++..+ +||+ |+++.|+|+.+..+
T Consensus 49 ~~~Y~~-~g~-----~~lr~~ia~~~~~------~~~~I~~t~G~~~~l~~~~~~~--~gd~----V~v~~P~y~~~~~~ 110 (337)
T PRK03967 49 FNRYPH-ITS-----DPLREAIAEFYGL------DAENIAVGNGSDELISYLVKLF--EGKH----IVITPPTFGMYSFY 110 (337)
T ss_pred cccCCC-CCH-----HHHHHHHHHHhCc------CcceEEEcCCHHHHHHHHHHHh--CCCe----EEEeCCChHHHHHH
Confidence 345764 566 9999999999984 5569999999999999888776 6888 99999999999998
Q ss_pred HHHhCCeeeeecCCcc-cccc------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC---CCcC
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ---YTPI 172 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~---~~~~ 172 (360)
++..|.+++.++.+.+ +++. .++++++++++||||||.+++ +++.++++ +++++|+||+|.+.. ..+.
T Consensus 111 ~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~ 189 (337)
T PRK03967 111 AKLNGIPVIDVPLKEDFTIDGERIAEKAKNASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGL 189 (337)
T ss_pred HHHcCCeEEEeecCCCCCcCHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHH
Confidence 9999999999987643 2321 257889999999999999999 56667776 799999999998532 1222
Q ss_pred CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHH
Q 018172 173 TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMS 252 (360)
Q Consensus 173 ~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 252 (360)
....+++++++||||+|+++|+|+||+++ ++++++.+.+... .++.+.++|.++..+++ +. +++.+.++.+.
T Consensus 190 ~~~~~~vi~l~S~SK~~~l~GlRiG~iv~-~~~~i~~~~~~~~--~~~~~~~~q~~~~~~l~---~~--~~~~~~~~~~~ 261 (337)
T PRK03967 190 IDEYPNLILLRTFSKAFGLAGIRAGYAIA-NEEIIDALYRIKP--PFSLNILTMKIVRLALD---HY--DLIEERIDYII 261 (337)
T ss_pred HhhCCCEEEEecchHhhcchhhhheeeec-CHHHHHHHHhhcC--CCCCCHHHHHHHHHHHh---CH--HHHHHHHHHHH
Confidence 24457899999999999999999999999 8999999988764 35778999999988886 22 56666666777
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC
Q 018172 253 ERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS 332 (360)
Q Consensus 253 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~ 332 (360)
++++.+.+.|+++. .| +.++|+|++++ +.+.|.++||.++++... ..+++||+++
T Consensus 262 ~~r~~l~~~L~~~~-----~~-------------~~~~~~~~~~~----~~~~l~~~gi~v~~~~~~--~~~~~Ri~~~- 316 (337)
T PRK03967 262 KERERVRRELGEYA-----YP-------------SDANFLLLKLD----AYDYLLENGIVVRKLSGR--LEGHIRVTVG- 316 (337)
T ss_pred HHHHHHHHHhccCc-----CC-------------CCCcEEEEhHH----HHHHHHHCCEEEEeCCCC--CCCeEEEecC-
Confidence 78888888887651 12 33458888763 567777889999986532 3679999984
Q ss_pred ChHHHHHHHHHHHHHHhc
Q 018172 333 REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 333 ~~e~~~~~~~~l~~~~~~ 350 (360)
++++.++++++|.++.+.
T Consensus 317 ~~~~~~~l~~~l~~~~~~ 334 (337)
T PRK03967 317 KREENDEFIKALKEIKEG 334 (337)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 566778899998887654
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=271.92 Aligned_cols=263 Identities=19% Similarity=0.220 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCc
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDA 118 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~ 118 (360)
..||++++++++ ++|++|+|+++++..++..+ .+||+ |++++|+|+.+..+++..|++++.+++|.
T Consensus 43 ~~l~~~ia~~~~---------~~I~vt~G~~~al~~~~~~~-~~gd~----vlv~~P~y~~~~~~~~~~g~~~~~~~~d~ 108 (311)
T PRK08354 43 EWLEEEFSKLFG---------EPIVITAGITEALYLIGILA-LRDRK----VIIPRHTYGEYERVARFFAARIIKGPNDP 108 (311)
T ss_pred HHHHHHHHHHHC---------CCEEECCCHHHHHHHHHHhh-CCCCe----EEEeCCCcHHHHHHHHHcCCEEeecCCCH
Confidence 789999999987 36999999999999887544 48998 99999999999999999999999998887
Q ss_pred cccccC-CCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccccCCCC
Q 018172 119 NTFDKN-NGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTGHAG 193 (360)
Q Consensus 119 ~~~~~~-~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~~~~G 193 (360)
+.+... .+++++++++||||||.+++. .+.++|+++++++|+||+|.+..+.......+++++++||||+|++||
T Consensus 109 ~~l~~~~~~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~G 188 (311)
T PRK08354 109 EKLEELVERNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPG 188 (311)
T ss_pred HHHHHhhcCCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCcc
Confidence 666442 256889999999999999993 445677779999999999985432211123678999999999999999
Q ss_pred ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q 018172 194 SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEY 273 (360)
Q Consensus 194 ~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 273 (360)
+|+||+++ +.+.++..+. ....+.+.|.++.++++ +. .+++.+.++.++++++.+.+.+. ..
T Consensus 189 lRiG~~v~----~~~~l~~~~~--~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~l~~~l~-------~~- 250 (311)
T PRK08354 189 IRVGYVKG----FEEAFRSVRM--PWSIGSTGYAFLEFLIE---DD-FEHLRKTMPLIWREKERFEKALY-------VK- 250 (311)
T ss_pred ceeeeeee----hHHHHHHcCC--CccCCHHHHHHHHHHHH---hH-HHHHHHHHHHHHHHHHHHHHhcC-------CC-
Confidence 99999998 4455655543 34555566666666655 22 24555555666665555444331 11
Q ss_pred CCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 274 PLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
+.++|+++++++...+.+.|.++||.++||..|+. ++++||+++ .+++.++++++|+++.
T Consensus 251 -------------~~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~-~~~iRi~~~-~~~~~~~l~~al~~~~ 310 (311)
T PRK08354 251 -------------SDANFFIKDVGDAEKFVEFLKRNGILVRDCTSFGL-PGYIRFSVR-DREENEKLIRALREWR 310 (311)
T ss_pred -------------CCCcEEEEECCCHHHHHHHHHHCCeEEEecccCCC-CCeEEEEeC-CHHHHHHHHHHHHHhh
Confidence 33446667776666677778899999999999974 689999994 5556688888887753
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=277.19 Aligned_cols=282 Identities=23% Similarity=0.308 Sum_probs=226.4
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
.+|+++.+ +++|++++++++. ++++|++|+|+++++..++..++++||+ |++++|+|+.+..++
T Consensus 49 ~~y~~~~~------~~lr~~ia~~~~~------~~~~i~~~~G~~~~l~~~~~~l~~~gd~----v~~~~p~y~~~~~~~ 112 (346)
T TIGR01141 49 HRYPDPDP------AELKQALADYYGV------DPEQILLGNGSDEIIELLIRAFLEPGDA----VLVPPPTYSMYEISA 112 (346)
T ss_pred hcCCCCCH------HHHHHHHHHHhCc------ChHHEEEcCCHHHHHHHHHHHhcCCCCE----EEEcCCCHHHHHHHH
Confidence 45766553 8999999999984 5568999999999999999999999998 999999999988889
Q ss_pred HHhCCeeeeecCCccc-cc-----c--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhc--CcEEEEeecccCCCCC---
Q 018172 105 DYLRSGLYKWDGDANT-FD-----K--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSA--EGKLIHDLAYYWPQYT--- 170 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~~-~~-----~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~--~~~li~D~ay~~~~~~--- 170 (360)
+..|.+++.++.+.++ .+ . ++++++|++++||||||.+++ +.+.++++.. ++++|+|++|.+....
T Consensus 113 ~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~ 192 (346)
T TIGR01141 113 KIHGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPST 192 (346)
T ss_pred HHcCCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccH
Confidence 9999999999876543 11 1 467899999999999999999 4555555544 9999999999842211
Q ss_pred -cCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHH
Q 018172 171 -PITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRR 249 (360)
Q Consensus 171 -~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (360)
+.....+++++++|+||.||++|+|+||+++ ++++++.+..... .++.+.++|.++.++++ .. .++++.++
T Consensus 193 ~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~---~~--~~~~~~~~ 264 (346)
T TIGR01141 193 LPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIA-NAEIIDALNKVRA--PFNLSRLAQAAAIAALR---DD--DFIEKTVE 264 (346)
T ss_pred HHHHhhCCCEEEEehhhHhhhchhhhceeeec-CHHHHHHHHhccC--CCCCCHHHHHHHHHHhC---CH--HHHHHHHH
Confidence 1223345789999999999989999999998 8999999887653 46778899999888776 22 47889999
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-hHHHHHHHHhhCeeeeCCCCCCCCCCeEEE
Q 018172 250 LMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-DEDCEKLLRAERIMARGGRRFGADAKYARV 328 (360)
Q Consensus 250 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~ 328 (360)
.++++++.+.+.|.+++++.+. +. .+.|+|+++++ .+.+.+.|.++||.+.||..|+..++++|+
T Consensus 265 ~~~~~~~~l~~~L~~~~g~~~~-~~-------------~g~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRl 330 (346)
T TIGR01141 265 EINAERERLYDGLKKLPGLEVY-PS-------------DANFVLIRFPRDADALFEALLEKGIIVRDLNSYPGLPNCLRI 330 (346)
T ss_pred HHHHHHHHHHHHHHhcCCCEEC-CC-------------cCCEEEEecCCCHHHHHHHHHHCCeEEEeCCCcCCCCCeEEE
Confidence 9999999999999988655432 22 23478888873 477777888899999999988533789999
Q ss_pred EecCChHHHHHHHHHHH
Q 018172 329 SMLSREEIFNIFLERLS 345 (360)
Q Consensus 329 s~~~~~e~~~~~~~~l~ 345 (360)
|++ +++++++++++|+
T Consensus 331 s~~-~~~~i~~~~~~l~ 346 (346)
T TIGR01141 331 TVG-TREENDRFLAALR 346 (346)
T ss_pred ecC-CHHHHHHHHHHhC
Confidence 985 7889999998763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=264.63 Aligned_cols=303 Identities=18% Similarity=0.202 Sum_probs=249.9
Q ss_pred ccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. ++|...+.+..+ .+-.+...+.+|++|+|.|++++.++..+++.||+ |++++++|++....
T Consensus 94 lQYg~s~G~-----peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~----vlie~~ty~~AL~s 164 (472)
T KOG0634|consen 94 LQYGQSSGI-----PELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDH----VLIEEYTYPSALQS 164 (472)
T ss_pred hccccccCc-----HHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCc----eEEecccchHHHHh
Confidence 569999998 999999999544 33444555678999999999999999999999999 99999999999999
Q ss_pred HHHhCCeeeeecCCcccccc----------------CCCeeEE-EEcCCCCCCcccch----HHHHHHhhhcCcEEEEee
Q 018172 104 TDYLRSGLYKWDGDANTFDK----------------NNGAYIE-VVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDL 162 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~----------------~~~~~~i-~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ 162 (360)
.+.+|++++++++|.+|+.. +++++++ .|++-+||||.+++ +.+.++|++|++++|+||
T Consensus 165 ~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDd 244 (472)
T KOG0634|consen 165 MEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDD 244 (472)
T ss_pred ccccCceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecC
Confidence 99999999999999888765 1345554 55677999999998 467789999999999999
Q ss_pred cccCCCCC------------------------cC--CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh
Q 018172 163 AYYWPQYT------------------------PI--TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL 216 (360)
Q Consensus 163 ay~~~~~~------------------------~~--~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~ 216 (360)
.|..-.+. +. .+..+|||-..||||.++ ||+|+||+.+ +..+++++.+....
T Consensus 245 pYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~it~-~~~~l~ril~~ae~ 322 (472)
T KOG0634|consen 245 PYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWITG-NSLFLKRILDLAEV 322 (472)
T ss_pred ccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEeec-CHHHHHHHhhhcce
Confidence 99831111 00 145689999999999999 9999999999 88888888888877
Q ss_pred ccccCChHHHHHHHHHhcccC-CCchhHHHHHHHHHHHHHHHHHHHHHhc-CC--cccCCCCCcccccccccCCCCCCcc
Q 018172 217 GSIGVSKESQLRAAKILGIVS-DDYPNFFEYGRRLMSERWNMLRQVIRQS-GV--FGLPEYPLEYCNFTGKFTNSHPGFA 292 (360)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (360)
.+.+++..+|....++|+..- +++.+|+.+++..|.+|+..+..+|.++ +. ..+..|.++ +|+
T Consensus 323 ~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aG-------------mFi 389 (472)
T KOG0634|consen 323 ATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAG-------------MFI 389 (472)
T ss_pred eecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcc-------------eEE
Confidence 888899999999999888532 3456899999999999999999999887 32 233444444 489
Q ss_pred cccCC-------ch-----HHHHHHHHhhCeeeeCCCCCCCC-----C-CeEEEEecC-ChHHHHHHHHHHHHHHhch
Q 018172 293 WLESK-------ED-----EDCEKLLRAERIMARGGRRFGAD-----A-KYARVSMLS-REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 293 ~~~~~-------~~-----~~~~~~l~~~gI~~~pg~~f~~~-----~-~~~R~s~~~-~~e~~~~~~~~l~~~~~~~ 351 (360)
|++++ +. +.+...+.++||.+++|+.|..+ . -++|++++. +.|+++++++++..++.+.
T Consensus 390 wv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~ 467 (472)
T KOG0634|consen 390 WVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEH 467 (472)
T ss_pred EEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHH
Confidence 99886 32 66788899999999999999432 2 399999988 8999999999999999764
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=272.01 Aligned_cols=280 Identities=24% Similarity=0.304 Sum_probs=218.8
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|+ ..|. +++|++++++++. .+++|++|+|+++++..++..++++||+ |+++.|+|..+...+
T Consensus 52 ~~y~-~~g~-----~~lr~~ia~~~~~------~~~~I~~~~G~~~~l~~~~~~~~~~gd~----Vli~~p~y~~~~~~~ 115 (352)
T PRK03321 52 NRYP-DMGA-----VELRAALAEHLGV------PPEHVAVGCGSVALCQQLVQATAGPGDE----VIFAWRSFEAYPILV 115 (352)
T ss_pred CcCC-CCcH-----HHHHHHHHHHhCc------CHHHEEECCCHHHHHHHHHHHhcCCCCE----EEeCCCCHHHHHHHH
Confidence 4465 3465 9999999999984 4568999999999999999999999998 999999999998999
Q ss_pred HHhCCeeeeecCCc-ccccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhh--cCcEEEEeecccCCCCC---
Q 018172 105 DYLRSGLYKWDGDA-NTFDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRS--AEGKLIHDLAYYWPQYT--- 170 (360)
Q Consensus 105 ~~~g~~~~~~~~~~-~~~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~--~~~~li~D~ay~~~~~~--- 170 (360)
+..|.+++.++.+. .+++. +++++++++++||||||.+++ +.+.++++. +++++|+|++|.+..+.
T Consensus 116 ~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~ 195 (352)
T PRK03321 116 QVAGATPVQVPLTPDHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDV 195 (352)
T ss_pred HHcCCEEEEccCCCCCCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCC
Confidence 99999999998763 23322 357899999999999999999 455555553 69999999999842221
Q ss_pred --c--CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHH
Q 018172 171 --P--ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEY 246 (360)
Q Consensus 171 --~--~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 246 (360)
+ .....+++++++||||.||++|+|+||+++ ++++++.+.+.. ...+.+.+.|.++.+++.. . ....+
T Consensus 196 ~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~-~~~~~~~~~~~~--~~~~~s~~~q~~a~~~l~~--~---~~~~~ 267 (352)
T PRK03321 196 PDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVG-HPEVIAALRKVA--VPFSVNSLAQAAAIASLAA--E---DELLE 267 (352)
T ss_pred CcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcC-CHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcC--H---HHHHH
Confidence 1 113456899999999999999999999998 899999998763 4678899999988887762 1 33344
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCCCCCe
Q 018172 247 GRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGADAKY 325 (360)
Q Consensus 247 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~~~~~ 325 (360)
..+.+.++++.+.+.|++.+ +.... +.++|+|++++.. ..+.+.|+++||.+++ |+ +.+
T Consensus 268 ~~~~~~~~r~~~~~~L~~~~-~~~~~--------------~~g~~i~i~l~~~~~~~~~~l~~~gI~v~~---~~--~~~ 327 (352)
T PRK03321 268 RVDAVVAERDRVRAALRAAG-WTVPP--------------SQANFVWLPLGERTADFAAAAAEAGVVVRP---FA--GEG 327 (352)
T ss_pred HHHHHHHHHHHHHHHHHHCC-CccCC--------------CCCCEEEEeCCCCHHHHHHHHHHCCEEEEc---cC--CCc
Confidence 44555666788999998874 33221 2234889888643 6677778899999987 44 356
Q ss_pred EEEEecCChHHHHHHHHHHHHHHh
Q 018172 326 ARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 326 ~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
+||++ .+++++++++++|.+++.
T Consensus 328 iRi~~-~~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 328 VRVTI-GAPEENDAFLRAARAWRA 350 (352)
T ss_pred EEEee-CCHHHHHHHHHHHHHHhc
Confidence 99998 688889999999998754
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=245.97 Aligned_cols=324 Identities=19% Similarity=0.219 Sum_probs=253.5
Q ss_pred hHHHHHHhcCCceeeecCCcccccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcC
Q 018172 3 FEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSS 81 (360)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~ 81 (360)
|..||++...+...+..-...+.+|..++|. ..|-+++++++. .+|..++.. +|.+|+|++.+.+.++..+..
T Consensus 46 m~~~f~~~~aemla~~~~~e~~cnY~~pQG~-----~~li~ala~~l~~~ygwnit~~-NIalTnGSQs~fFYlfNlF~G 119 (417)
T COG3977 46 MDDYFQDLLAEMLASGKATEALCNYDGPQGK-----AVLIDALAKMLRREYGWNITAQ-NIALTNGSQSAFFYLFNLFAG 119 (417)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhcCCCCcch-----hHHHHHHHHHHHHHhCCCCccc-eeeecCCccchHHHHHHHhcC
Confidence 5788888887777766666778899999998 999999999876 568888876 899999999999999888843
Q ss_pred ---CCCCCCceEEEe-CCCCCCcHHHHHH-------------hCCeeeeecCCccccccCCCeeEEEEcCCCCCCcccch
Q 018172 82 ---PGGPEPISVVSA-APYYSQYPAETDY-------------LRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTIRE 144 (360)
Q Consensus 82 ---~gd~~~~~vl~~-~p~~~~~~~~~~~-------------~g~~~~~~~~~~~~~~~~~~~~~i~~~~p~NPtG~~~~ 144 (360)
.|+. ++|++| .|.|..|..+.-. +....-+..+|.+.+...+++.+|+++-|.||||.+++
T Consensus 120 ~~sdG~~--k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~i~e~~g~ic~SRPtNPTGNVlT 197 (417)
T COG3977 120 RRSDGTE--KKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLHIGESTGAICVSRPTNPTGNVLT 197 (417)
T ss_pred ccCCCcc--eeEeeccChhhccccccccCccceeeccCCcccccccceeeccCHHHcccccccceEEecCCCCCCCCccc
Confidence 3443 456666 6999888766322 11112234456666777889999999999999999998
Q ss_pred H----HHHHHhhhcCcEEEEeecccCCCCC----cC-CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHh
Q 018172 145 A----VLAKVNRSAEGKLIHDLAYYWPQYT----PI-TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIE 215 (360)
Q Consensus 145 ~----~~~~~~~~~~~~li~D~ay~~~~~~----~~-~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~ 215 (360)
+ .+..++++||+.+|+|.+|+-+... .. +-..++.+.+.|+|| .|+||.|+|-+++ ++++++.+.++..
T Consensus 198 deE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~~NiilC~SLSK-~GLPG~R~GIiIa-ne~viqaitnmn~ 275 (417)
T COG3977 198 DEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWNENIILCMSLSK-LGLPGSRCGIIIA-NEKVIQAITNMNG 275 (417)
T ss_pred HHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCCCCEEEEeehhh-cCCCCcceeEEEc-cHHHHHHHHhccc
Confidence 3 3457888999999999999843211 11 136788999999999 8999999999998 9999999999999
Q ss_pred hccccCChHHHHHHHHHhcccCCCchhHHHH-HHHHHHHHHHHHHHHHHhc-C--CcccCCCCCcccccccccCCCCCCc
Q 018172 216 LGSIGVSKESQLRAAKILGIVSDDYPNFFEY-GRRLMSERWNMLRQVIRQS-G--VFGLPEYPLEYCNFTGKFTNSHPGF 291 (360)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (360)
..+..+..+++..++.+++ ++.....-++ ++..|+++.+...+.|++. + ...+.+|+|+. |
T Consensus 276 iisLap~~~G~Aia~~mie--~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAI-------------F 340 (417)
T COG3977 276 IISLAPGRMGPAIAAEMIE--SGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAI-------------F 340 (417)
T ss_pred eeeecCCCccHHHHHHHhh--cchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeecCCcce-------------e
Confidence 8889999999999999988 3333233333 4566888888888888765 2 34456777776 6
Q ss_pred ccccCCch----HHHHHHHHhhCeeeeCCCCCC--CC------CCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 292 AWLESKED----EDCEKLLRAERIMARGGRRFG--AD------AKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 292 ~~~~~~~~----~~~~~~l~~~gI~~~pg~~f~--~~------~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
+|+.+++- +.+++.|+++|+.++||+.|- .+ ..|+|+++..++++++..+++|.+.+++.
T Consensus 341 lWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gva~lae~ve~~ 412 (417)
T COG3977 341 LWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAILAEEVERA 412 (417)
T ss_pred ehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 66666552 889999999999999999883 22 34799999889999999999999998764
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-31 Score=243.17 Aligned_cols=273 Identities=15% Similarity=0.110 Sum_probs=211.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEe---CCCCCCcHHHHHHhCCeeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSA---APYYSQYPAETDYLRSGLYKW 114 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~---~p~~~~~~~~~~~~g~~~~~~ 114 (360)
+.+|++.+++|++. +++++++++|+++++..++.++.++||+ |+++ .|+|..+...++..|++++.+
T Consensus 56 ~~~Le~~lA~~~g~------~~e~ilv~~gg~~a~~~~~~al~~~gd~----Vli~~~d~p~~~s~~~~~~l~ga~~~~~ 125 (346)
T TIGR03576 56 EEKVQELGREHLGG------PEEKILVFNRTSSAILATILALEPPGRK----VVHYLPEKPAHPSIPRSCKLAGAEYFES 125 (346)
T ss_pred HHHHHHHHHHHcCC------CcceEEEECCHHHHHHHHHHHhCCCCCE----EEECCCCCCCchhHHHHHHHcCCEEecc
Confidence 48888889999886 5678999999999999999999999998 8864 579999999999999987544
Q ss_pred cCCccccccCCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCCCc----CCCCCCccEEEeccc
Q 018172 115 DGDANTFDKNNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQYTP----ITGAADHDIMLFTLS 186 (360)
Q Consensus 115 ~~~~~~~~~~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~~~----~~~~~~~~i~~~S~s 186 (360)
. +.+.+...+++++|+++ ++||+|.+++ +.+.++|+++++++++||+|..+.... .....+.++++.|||
T Consensus 126 ~-~l~~l~~~~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~S 203 (346)
T TIGR03576 126 D-ELSELKKIDGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTD 203 (346)
T ss_pred C-CHHHHhhCcCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccc
Confidence 2 22334334567888875 4689999976 345567777999999999998642111 011223468889999
Q ss_pred cccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 187 KCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 187 K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
| +++|+|+||+++ ++++++.+.+......++.+++.|.++.++|+.. ..+..++.++++++.+.+.++.+
T Consensus 204 K--alaG~r~G~v~~-~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~------~~~~~~~~l~~r~~~~~~~l~~~- 273 (346)
T TIGR03576 204 K--LMDGPRGGLLAG-RKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEF------ELSRIRDAFKRKEEVYLRLFDKL- 273 (346)
T ss_pred h--hccccceEEEEe-CHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhc------cHHHHHHHHHHHHHHHHHHHHhC-
Confidence 9 568999999998 8999999998887666678889999888888631 13567888999988888888753
Q ss_pred CcccCCCCCcccccccccCCCCCCcccccCCc--h-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChH---HHHHH
Q 018172 267 VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--D-EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREE---IFNIF 340 (360)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e---~~~~~ 340 (360)
.+. + +.++|+|++++. . +++.++|+++||.++||..|...++|+|||++.+++ +++.+
T Consensus 274 --~~~-~-------------~~~~f~~~~~~~~~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~ 337 (346)
T TIGR03576 274 --NVE-R-------------TPTGFVIKGVEEEKLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERIGDDYL 337 (346)
T ss_pred --CCC-c-------------CCCeEEEEeCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEecChHHhcCHHHH
Confidence 221 1 233488888863 3 788999999999999998885447899999977665 78999
Q ss_pred HHHHHHHH
Q 018172 341 LERLSAIQ 348 (360)
Q Consensus 341 ~~~l~~~~ 348 (360)
+++|++.+
T Consensus 338 ~~al~~~~ 345 (346)
T TIGR03576 338 VEAVKDSL 345 (346)
T ss_pred HHHHHhcc
Confidence 99998754
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-30 Score=239.43 Aligned_cols=295 Identities=26% Similarity=0.321 Sum_probs=238.7
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|.+..|. .+++++++++++.........+++++++|+++++..++..+.++|++ |+++.|+|.++..++
T Consensus 30 ~~~~~~~~~-----~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~----vl~~~~~~~~~~~~~ 100 (350)
T cd00609 30 LGYYPDPGL-----PELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDE----VLVPDPTYPGYEAAA 100 (350)
T ss_pred CCCCCCCCc-----HHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCE----EEEcCCCchhHHHHH
Confidence 347777887 99999999998863222223558999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCCccccc----------cCCCeeEEEEcCCCCCCcccch-HH---HHHHhhhcCcEEEEeecccCCCC-
Q 018172 105 DYLRSGLYKWDGDANTFD----------KNNGAYIEVVNSPNNPDGTIRE-AV---LAKVNRSAEGKLIHDLAYYWPQY- 169 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~----------~~~~~~~i~~~~p~NPtG~~~~-~~---~~~~~~~~~~~li~D~ay~~~~~- 169 (360)
+..|.+++.++.+.++.. .++++++|++++|+||||..++ +. +.++|+++|+++|+|++|+....
T Consensus 101 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~ 180 (350)
T cd00609 101 RLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYD 180 (350)
T ss_pred HHCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeC
Confidence 999999998887643221 1468899999999999999998 22 34788889999999999985321
Q ss_pred ---C---cCCCCCCccEEEeccccccCCCCceEEEEeecCH-HHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 170 ---T---PITGAADHDIMLFTLSKCTGHAGSRIGWALVKDT-EVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 170 ---~---~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
. ...+..+++++++|++|.++.+|.|+||+++ ++ ++.+.+.........+.+...+.++..+++... .
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 255 (350)
T cd00609 181 GEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIA-PPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGE----E 255 (350)
T ss_pred CcccccccCcCccCcEEEEeecccccCCcccceEEEec-CHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcH----H
Confidence 1 1234667789999999999989999999999 55 899999888777678889999999888887322 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCC
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRF 319 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f 319 (360)
++++.++.+.++++++.+.|.+.+......+ ..++++|+.+++. ..+.++|.++||.+.++..|
T Consensus 256 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-------------~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~ 322 (350)
T cd00609 256 HLEELRERYRRRRDALLEALKELGPLVVVKP-------------SGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAF 322 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCC-------------CccEEEEEecCCCChHHHHHHHHHhCCEEEeccccc
Confidence 8899999999999999999999865442222 3344788887653 67888999999999998877
Q ss_pred CC-CCCeEEEEecCChHHHHHHHHHHHH
Q 018172 320 GA-DAKYARVSMLSREEIFNIFLERLSA 346 (360)
Q Consensus 320 ~~-~~~~~R~s~~~~~e~~~~~~~~l~~ 346 (360)
.. ...++|++++..+|++++++++|++
T Consensus 323 ~~~~~~~iRi~~~~~~~~i~~~~~al~~ 350 (350)
T cd00609 323 GEGGEGFVRLSFATPEEELEEALERLAE 350 (350)
T ss_pred ccCCCCeEEEEeeCCHHHHHHHHHHhhC
Confidence 52 4679999997789999999999863
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=240.23 Aligned_cols=284 Identities=15% Similarity=0.106 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh----cCCCCCCCceEEEeCCCCCC----cHHHHHHhCCe
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL----SSPGGPEPISVVSAAPYYSQ----YPAETDYLRSG 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l----~~~gd~~~~~vl~~~p~~~~----~~~~~~~~g~~ 110 (360)
+++|+.++++++.. ++++|++|+|+|+++++++.++ +++||+ |++++|+|++ +...++..|++
T Consensus 63 ~~~r~~la~~~g~~-----~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~----Vl~~~~~~~s~~~~~~~~~~~~g~~ 133 (398)
T TIGR03392 63 ELARQQVARFLNAP-----DAENIVWTRGTTESINLVAQSYARPRLQPGDE----IIVSEAEHHANLIPWLMVAQQTGAK 133 (398)
T ss_pred HHHHHHHHHHhCCC-----CCCeEEEeCChHHHHHHHHHHhhhccCCCCCE----EEECCcchhHHHHHHHHHHHHcCcE
Confidence 78999999999861 2468999999999999999988 478887 9999999976 34556778999
Q ss_pred eeeecCCccc-ccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEE
Q 018172 111 LYKWDGDANT-FDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181 (360)
Q Consensus 111 ~~~~~~~~~~-~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~ 181 (360)
++.++.+.++ ++. +++++++++++||||||.+++ +.+.++|+++|+++++|++|+.+..+......+.+++
T Consensus 134 v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~ 213 (398)
T TIGR03392 134 VVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFY 213 (398)
T ss_pred EEEEecCCCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEE
Confidence 9999876442 211 468999999999999999998 6778888889999999999986555433344567899
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHH---------------------hhccccCChHHHHHHHHHhcccCCCc
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI---------------------ELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
+.|++|.+|++| +||++. ++++++.+.... .+...+.+.....++.++++.+.+
T Consensus 214 ~~s~~K~~gp~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~-- 288 (398)
T TIGR03392 214 AFSGHKLYGPTG--IGVLYG-KTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTD-- 288 (398)
T ss_pred EEecccccCCCc--eEEEEE-cHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHH--
Confidence 999999999766 899998 788777764221 111224555677777777775532
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~ 318 (360)
..+++++++..+.++++.+.|++++++.+..+.. ..++++.+++ .+++.+.|.++||.+++|..
T Consensus 289 -~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~-------------~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~ 354 (398)
T TIGR03392 289 -IDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPG-------------SSLLAFDFAGVHHSDLAALLAESGIALRAGQH 354 (398)
T ss_pred -hCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC-------------CcEEEEEeCCcCHHHHHHHHHhCCEEEecCcc
Confidence 3456788888899999999999887665443221 1244545543 36788888999999999875
Q ss_pred CCC-------CCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 319 FGA-------DAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 319 f~~-------~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
+.. .++++|+|+.. +++|+++++++|++++..
T Consensus 355 ~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 355 CAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred chHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 421 25799999865 899999999999998764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=238.60 Aligned_cols=284 Identities=14% Similarity=0.100 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh----cCCCCCCCceEEEeCCCCCC----cHHHHHHhCCe
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL----SSPGGPEPISVVSAAPYYSQ----YPAETDYLRSG 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l----~~~gd~~~~~vl~~~p~~~~----~~~~~~~~g~~ 110 (360)
+++|+.++++++. .++++|++|+|+|++++.++.++ +++||+ |++++|+|++ +...++..|++
T Consensus 66 ~~~r~~la~~~g~-----~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~----vl~~~~~~~s~~~~~~~~~~~~g~~ 136 (401)
T PRK10874 66 EAAREQVAQLLNA-----PDAKNIVWTRGTTESINLVAQSYARPRLQPGDE----IIVSEAEHHANLVPWLMVAQQTGAK 136 (401)
T ss_pred HHHHHHHHHHcCC-----CCCCEEEEECCHHHHHHHHHHHhhhccCCCcCE----EEECCcchHHHHHHHHHHHHHhCCE
Confidence 7899999999985 13568999999999999999998 478888 9999999976 34556778999
Q ss_pred eeeecCCccc-c-----cc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEE
Q 018172 111 LYKWDGDANT-F-----DK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181 (360)
Q Consensus 111 ~~~~~~~~~~-~-----~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~ 181 (360)
++.++.+.++ + .. +++++++++++|+||||..++ +++.++|+++|+++|+|++|+.+..+......+.+++
T Consensus 137 v~~v~~~~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~ 216 (401)
T PRK10874 137 VVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFY 216 (401)
T ss_pred EEEEecCCCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEE
Confidence 9998876432 1 11 478999999999999999998 6778888889999999999986554433345568899
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHH---------------------hhccccCChHHHHHHHHHhcccCCCc
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI---------------------ELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
+.|++|.+|++| +||++. ++++++.+.... .+...+.|...+.++.++++.+.+
T Consensus 217 ~~s~~K~~gp~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~-- 291 (401)
T PRK10874 217 AFSGHKLYGPTG--IGVLYG-KSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLAD-- 291 (401)
T ss_pred EEecccccCCCc--cEEEEE-chHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHH--
Confidence 999999999777 699888 788877664221 112234566677777777775432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~ 318 (360)
...++.+++.++.++++.+.|++++++....+... .++++.+++ .+++.+.|.++||.+++|..
T Consensus 292 -~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~-------------~i~~~~~~~~~~~~~~~~L~~~gI~v~~g~~ 357 (401)
T PRK10874 292 -IDINQAESWSRSLATLAEDALAKLPGFRSFRCQDS-------------SLLAFDFAGVHHSDLVTLLAEYGIALRAGQH 357 (401)
T ss_pred -hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC-------------cEEEEEECCcCHHHHHHHHHHCCcEEecccc
Confidence 34556788888889999999998866654432221 234445543 36777888999999999875
Q ss_pred CCC-------CCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 319 FGA-------DAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 319 f~~-------~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
+.. ..+++|+|+.. +++|+++++++|++++..
T Consensus 358 ~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 358 CAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred chHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 531 25799999966 999999999999998764
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-29 Score=207.14 Aligned_cols=296 Identities=19% Similarity=0.242 Sum_probs=225.1
Q ss_pred cccccCCCC------ccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCC
Q 018172 24 MSYLSDMGN------VCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYY 97 (360)
Q Consensus 24 ~~~y~~~~g------~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~ 97 (360)
.++|+++.. +|++..++++.+++.- .+.+ +++|+++.|+.|.+..+++..+.||.. +++.-.|+|
T Consensus 51 ~~ryPdP~q~efk~~~~d~rnk~ls~a~~~d-----kpLt-~dnic~GvGsDE~ID~iiR~~c~PGke---KIl~cPPty 121 (375)
T KOG0633|consen 51 NPRYPDPEQMEFKYVYPDPRNKRLSDALAQD-----KPLT-SDNICVGVGSDELIDLIIRCVCDPGKE---KILDCPPTY 121 (375)
T ss_pred CCCCcCHHHcccccccCCcccchhhhhcccC-----CCCC-ccceEEecCcHHHHHHHHhheecCCcc---ceeecCCcc
Confidence 356776654 3333344444444432 2333 469999999999999999999999944 399999999
Q ss_pred CCcHHHHHHhCCeeeeecCCcc-c---------cccCCCeeEEEEcCCCCCCcccchH-HHHHHhh-hcCcEEEEeeccc
Q 018172 98 SQYPAETDYLRSGLYKWDGDAN-T---------FDKNNGAYIEVVNSPNNPDGTIREA-VLAKVNR-SAEGKLIHDLAYY 165 (360)
Q Consensus 98 ~~~~~~~~~~g~~~~~~~~~~~-~---------~~~~~~~~~i~~~~p~NPtG~~~~~-~~~~~~~-~~~~~li~D~ay~ 165 (360)
+.|..-+...++++++++..++ . ++.+.++|++++++|+||||....+ .+.++-+ -.+.++++||||.
T Consensus 122 sMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYi 201 (375)
T KOG0633|consen 122 SMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYI 201 (375)
T ss_pred eeEEEEeecCCceEEEecCCCCccccHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeE
Confidence 9999888889999999986642 1 2225689999999999999999883 3444333 3579999999999
Q ss_pred CCC----CCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCch
Q 018172 166 WPQ----YTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 166 ~~~----~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
++. ..++...+.+.+++.++||+||++|+|+||-.+ +..+++.+.+.+. .++.+..+..+|.+++.. +--
T Consensus 202 dFsg~~S~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~-~~~ia~iln~~Ka--PYNiS~~~s~~AL~Als~---~n~ 275 (375)
T KOG0633|consen 202 DFSGVESRMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAF-PLSIAEILNRAKA--PYNISVAGSVAALAALSD---SNG 275 (375)
T ss_pred eeccccccchHhHhCCceeehhhhhhhcCcceeEeecccc-cHHHHHHHHhccC--CccccchhHHHHHHhcCc---ccc
Confidence 643 344557899999999999999999999999998 8999999998875 577777888888777763 223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch------HHHHHHHHhhCeeeeC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED------EDCEKLLRAERIMARG 315 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~gI~~~p 315 (360)
..|+..++.+.+.|+++...|..+++..- +.| ...+||+.+.+.+. ....+.+...|+.++.
T Consensus 276 kkme~~rdaiv~er~RL~keLt~v~~~~~--~~g----------g~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRf 343 (375)
T KOG0633|consen 276 KKMEDVRDAIVRERERLFKELTEVPFLND--YPG----------GSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRF 343 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCccccC--CCC----------cccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEE
Confidence 89999999999999999999999975442 222 25667888888743 3345666777999985
Q ss_pred -CCCCCCCCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 316 -GRRFGADAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 316 -g~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
|+--+ ..|++|+++ .++|+-+-+++-+++++
T Consensus 344 rgse~~-c~G~lRitv-Gt~EentvL~k~~K~~l 375 (375)
T KOG0633|consen 344 RGSEEG-CKGYLRITV-GTPEENTVLMKCLKQFL 375 (375)
T ss_pred cCCccc-cceeEEEEc-CCcccchHHHHHHHhhC
Confidence 22222 478999998 56666689999988763
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=230.29 Aligned_cols=284 Identities=13% Similarity=0.074 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHh----hcCCCCCCCceEEEeCCCCCCc----HHHHHHhCCe
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYA----LSSPGGPEPISVVSAAPYYSQY----PAETDYLRSG 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~----l~~~gd~~~~~vl~~~p~~~~~----~~~~~~~g~~ 110 (360)
+++|++++++++.. ++++|++|+|+|++++.++.+ ++++||+ |++++++|++. ...++..|++
T Consensus 70 ~~~r~~la~~~~~~-----~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~----vl~~~~~~~s~~~~~~~~~~~~g~~ 140 (406)
T PRK09295 70 ENVRKQAALFINAR-----SAEELVFVRGTTEGINLVANSWGNSNVRAGDN----IIISEMEHHANIVPWQMLCARVGAE 140 (406)
T ss_pred HHHHHHHHHHcCcC-----CCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCE----EEECcchhhHHHHHHHHHHHHcCcE
Confidence 68999999999851 346899999999999999886 4578888 99999988754 4556678999
Q ss_pred eeeecCCccc------ccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEE
Q 018172 111 LYKWDGDANT------FDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181 (360)
Q Consensus 111 ~~~~~~~~~~------~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~ 181 (360)
++.++.+.++ +.. ++++++|++++|+||||.+++ +.+.++|+++|+++++|++|..+..+......+.+++
T Consensus 141 v~~v~~~~~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~ 220 (406)
T PRK09295 141 LRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFY 220 (406)
T ss_pred EEEEecCCCCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEE
Confidence 9988865432 211 468999999999999999999 6777888889999999999987655433355677899
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHH----------------------HhhccccCChHHHHHHHHHhcccCCC
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRF----------------------IELGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~----------------------~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
+.|++|.+|++| +||++. ++++.+.+... ..+...+.+.....++.++++.+..
T Consensus 221 ~~s~~K~~gp~G--~G~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~- 296 (406)
T PRK09295 221 VFSGHKLYGPTG--IGILYV-KEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSA- 296 (406)
T ss_pred EeehhhccCCCC--cEEEEE-chHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHH-
Confidence 999999999777 899998 67776654311 1112335667777777778876542
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCC
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGR 317 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~ 317 (360)
..+++.+++.++.++++.+.|++++++.+..+.. ....+.+.++. .+++.+.|.++||.++.|.
T Consensus 297 --~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~------------~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~ 362 (406)
T PRK09295 297 --LGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQN------------RLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGH 362 (406)
T ss_pred --hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC------------CceEEEEEECCcCHHHHHHHHHhCCeEEeccc
Confidence 3467788889999999999999887666654421 11233444443 3677888999999999987
Q ss_pred CCCC-------CCCeEEEEecC--ChHHHHHHHHHHHHHHh
Q 018172 318 RFGA-------DAKYARVSMLS--REEIFNIFLERLSAIQG 349 (360)
Q Consensus 318 ~f~~-------~~~~~R~s~~~--~~e~~~~~~~~l~~~~~ 349 (360)
.+.. .++++|+|+.. ++||+++++++|+++..
T Consensus 363 ~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 363 HCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred cchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 4421 24689999976 89999999999998753
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-28 Score=228.21 Aligned_cols=287 Identities=17% Similarity=0.174 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh----cCCCCCCCceEEEeCCCCCCcH----HHHHHhCCe
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL----SSPGGPEPISVVSAAPYYSQYP----AETDYLRSG 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l----~~~gd~~~~~vl~~~p~~~~~~----~~~~~~g~~ 110 (360)
+++|+.++++++. .++++|++|+|+++++++++.++ .++||+ |+++++.|++.. ..++..|++
T Consensus 65 ~~~r~~ia~~~~~-----~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~----vl~~~~~~~s~~~~~~~~~~~~g~~ 135 (403)
T TIGR01979 65 EAVREKVAKFINA-----ASDEEIVFTRGTTESINLVAYSWGDSNLKAGDE----IVISEMEHHANIVPWQLLAERTGAT 135 (403)
T ss_pred HHHHHHHHHHhCc-----CCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCE----EEECcchhhHHHHHHHHHHHhcCcE
Confidence 7999999999986 12468999999999999998875 577887 999999888643 455667999
Q ss_pred eeeecCCccc-cc-----c--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEE
Q 018172 111 LYKWDGDANT-FD-----K--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181 (360)
Q Consensus 111 ~~~~~~~~~~-~~-----~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~ 181 (360)
++.++.+.++ +. . +++++++++++|+||||..++ +++.++|+++|+++++|++|+.+..+......+.+++
T Consensus 136 ~~~v~~~~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~ 215 (403)
T TIGR01979 136 LKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFY 215 (403)
T ss_pred EEEEecCCCCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEE
Confidence 9988876432 11 1 468999999999999999998 6777888889999999999986554433345578899
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHH---------------------hhccccCChHHHHHHHHHhcccCCCc
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI---------------------ELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
+.|++|.+|++| +|++++ ++++++.+.... .+...+.+...+.++.++++.+..
T Consensus 216 ~~s~~K~~gp~G--~g~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~-- 290 (403)
T TIGR01979 216 VFSGHKMYGPTG--IGVLYG-KEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEA-- 290 (403)
T ss_pred EEecccccCCCC--ceEEEE-chHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHH--
Confidence 999999998777 899988 677776653211 011124455566666666764432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~ 318 (360)
..+++.+++..+.++.+.+.|+.++++.+..|... ...+.++.+.+++ ..++.+.|+++||.+++|..
T Consensus 291 -~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g~~ 360 (403)
T TIGR01979 291 -IGLENIEAHEHELTAYALERLGEIPGLRIYGPRDA---------EDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHH 360 (403)
T ss_pred -hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc---------cccCceEEEEeCCcCHHHHHHHHhhCCEEEcchhh
Confidence 23677888999999999999998876766544310 0112344455543 36677899999999998763
Q ss_pred --------CCCCCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 319 --------FGADAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 319 --------f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
++. ++++|+|+.. +++|+++++++|+++++.
T Consensus 361 ~~~~~~~~~~~-~~~iRiS~~~~~t~~di~~l~~~l~~~~~~ 401 (403)
T TIGR01979 361 CAQPLMRRFGV-PATCRASFYIYNTEEDIDALVEALKKVRKF 401 (403)
T ss_pred hhHHHHHHhCC-CCEEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 332 5799999965 899999999999987764
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=227.08 Aligned_cols=291 Identities=13% Similarity=0.122 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh----cCCCCCCCceEEEeCCCCCCc----HHHHHHhCCe
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL----SSPGGPEPISVVSAAPYYSQY----PAETDYLRSG 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l----~~~gd~~~~~vl~~~p~~~~~----~~~~~~~g~~ 110 (360)
+++|+.++++++.. ++++|++|+|+|++++.++..+ +++||+ |+++.+.|++. ...++..|++
T Consensus 79 ~~~r~~la~~~~~~-----~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~----vl~~~~~~~s~~~~~~~~a~~~g~~ 149 (424)
T PLN02855 79 ELARKKVAAFINAS-----TSREIVFTRNATEAINLVAYTWGLANLKPGDE----VILSVAEHHSNIVPWQLVAQKTGAV 149 (424)
T ss_pred HHHHHHHHHHcCCC-----CCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCE----EEECCCccHHHHHHHHHHHHHcCCE
Confidence 68999999999861 3468999999999999998763 578888 99999988754 4455667999
Q ss_pred eeeecCCccc-cc-----c--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEE
Q 018172 111 LYKWDGDANT-FD-----K--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181 (360)
Q Consensus 111 ~~~~~~~~~~-~~-----~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~ 181 (360)
++.++.+.++ ++ . ++++++|++++|+||||..++ +++.++|+++|+++++|++|..+..+......+.+++
T Consensus 150 v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~ 229 (424)
T PLN02855 150 LKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFL 229 (424)
T ss_pred EEEEecCCCCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEE
Confidence 9988875432 22 1 468999999999999999999 6777888889999999999986544333345567899
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHH---------------------hhccccCChHHHHHHHHHhcccCCCc
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI---------------------ELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
+.|++|.+|++| +||++. ++++++.+.... .+...+.+.....++.++++.+.+
T Consensus 230 ~~s~~K~~gp~G--~G~l~~-~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~-- 304 (424)
T PLN02855 230 VASSHKMCGPTG--IGFLWG-KSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSE-- 304 (424)
T ss_pred EeecccccCCCc--cEEEEE-chhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHH--
Confidence 999999888666 899998 677776653221 111223444555566667765432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhh-CeeeeCCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAE-RIMARGGR 317 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~-gI~~~pg~ 317 (360)
..+++++++..+.++++.+.|.+++++.+..+.... ....++++.+.+++ .+.+.+.|.++ ||.++.|.
T Consensus 305 -~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~-------~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~ 376 (424)
T PLN02855 305 -IGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSE-------GVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGH 376 (424)
T ss_pred -hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccc-------ccCcccEEEEEECCcCHHHHHHHhcccCCEEEechh
Confidence 467888899999999999999888766665442100 00123355566653 37788888777 99999876
Q ss_pred CC--------CCCCCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 318 RF--------GADAKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 318 ~f--------~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
.+ +. ++++|+|+.. ++||+++++++|++++...+
T Consensus 377 ~c~~~~~~~~g~-~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 377 HCAQPLHRYLGV-NASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred hhhHHHHHHhCC-CCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 43 22 4689999966 89999999999999987643
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=222.46 Aligned_cols=277 Identities=13% Similarity=0.090 Sum_probs=202.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
..++++.+++|++. + ++++++|+++++..++..++++||. |+++.+.|.+....++..|++++.++.+
T Consensus 53 ~~~~~e~lA~~~g~-------~-~~~i~~g~~~a~~~~~~~l~~~gd~----Vl~~~~~h~s~~~~~~~~g~~~~~~~~~ 120 (370)
T TIGR02539 53 IHDFLEDLAEFLGM-------D-EARVTHGAREGKFAVMHALCKEGDW----VVLDGLAHYTSYVAAERAGLNVKEVPHT 120 (370)
T ss_pred HHHHHHHHHHHhCC-------C-ceEEECChHHHHHHHHHHhhCCCCE----EEECCcccHHHHHHHHHcCCEEEEEecC
Confidence 37889999999995 2 5777999999999999999999998 9999899777777888899999988764
Q ss_pred c--------ccccc--C-------CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCcc
Q 018172 118 A--------NTFDK--N-------NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHD 179 (360)
Q Consensus 118 ~--------~~~~~--~-------~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~ 179 (360)
. +.+.. + +++++|++++|+||||...+ +++.++|+++|+++|+|++|..+..+......+.+
T Consensus 121 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~d 200 (370)
T TIGR02539 121 GHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGAD 200 (370)
T ss_pred CcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCC
Confidence 2 22211 1 26789999999999999988 67888899899999999999975433222234577
Q ss_pred EEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhcccc--------CChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 180 IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIG--------VSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 180 i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
++++|+||+++ +|.|+||+++ ++++++.+.+.......+ .....+.++.+++... .+++++.++.+
T Consensus 201 i~v~s~sK~~~-~~g~~G~l~~-~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~----~~~l~~~~~~~ 274 (370)
T TIGR02539 201 FIVGSGHKSMA-ASGPCGVLGM-SEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHV----VERVKRWDEEV 274 (370)
T ss_pred EEEeeCccccc-CCCCEEEEEE-CHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 88999999999 6778999998 899999987765432221 1112444444445421 25555555555
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-----------HHHHHHHHhhCee-eeCCCCC
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-----------EDCEKLLRAERIM-ARGGRRF 319 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gI~-~~pg~~f 319 (360)
+.. +++.+.|++++ +.+..+. ++.++|++++++.. ..+.+.|+++||. +++
T Consensus 275 ~~~-~~l~~~L~~~g-~~~~~~~-----------~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~---- 337 (370)
T TIGR02539 275 KKT-RWFVAELEDIG-FIQLGQK-----------PKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRS---- 337 (370)
T ss_pred HHH-HHHHHHHHhCC-cEEEccC-----------CCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccC----
Confidence 554 58999999885 4331110 13345666665421 4588899999997 664
Q ss_pred CCCCCeEEEEecC-ChHHHHHHHHHHHHHHhc
Q 018172 320 GADAKYARVSMLS-REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 320 ~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~ 350 (360)
+. ++++|+++.. ++|++++++++|++++.+
T Consensus 338 ~~-~~~iRis~~~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 338 GQ-TKYFKLSVYGLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred Cc-ceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 22 5699999633 999999999999998754
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=224.78 Aligned_cols=300 Identities=11% Similarity=0.062 Sum_probs=212.8
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|++..|+ ++||++++++++. .++++|+|++++++.++.+++++|| |++++|.|..+...+
T Consensus 72 ~~Y~~~~g~-----~~Lreaia~~~~~--------~~vv~t~ggt~A~~~~~~all~pGD-----Vii~~p~~~~~~~~i 133 (460)
T PRK13238 72 EAYAGSRSY-----YRLEDAVKDIFGY--------PYTIPTHQGRAAEQILFPVLIKKGD-----VVPSNYHFDTTRAHI 133 (460)
T ss_pred cccCCCCCH-----HHHHHHHHHHhCC--------CcEEECCCHHHHHHHHHHHhCCCCC-----EEccCCcccchHHHH
Confidence 469999998 9999999999984 3799999999999999999999998 889999999999999
Q ss_pred HHhCCeeeeecCCc-------cccc----c-------C----CCeeEEEEcCCCCCCc-ccch----HHHHHHhhhcCcE
Q 018172 105 DYLRSGLYKWDGDA-------NTFD----K-------N----NGAYIEVVNSPNNPDG-TIRE----AVLAKVNRSAEGK 157 (360)
Q Consensus 105 ~~~g~~~~~~~~~~-------~~~~----~-------~----~~~~~i~~~~p~NPtG-~~~~----~~~~~~~~~~~~~ 157 (360)
...|++++.++++. +.+. . + +++++|++++|||||| .+++ +.+.++|+++|++
T Consensus 134 ~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~ 213 (460)
T PRK13238 134 ELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIP 213 (460)
T ss_pred HHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 99999999887753 1221 1 1 3699999999999998 7877 3567889999999
Q ss_pred EEEeecccCCCC--C-----cCC--CCCCccEEEeccccccCCCCceE------EEEeecCHHHHHHHHHHH----hhcc
Q 018172 158 LIHDLAYYWPQY--T-----PIT--GAADHDIMLFTLSKCTGHAGSRI------GWALVKDTEVARKMTRFI----ELGS 218 (360)
Q Consensus 158 li~D~ay~~~~~--~-----~~~--~~~~~~i~~~S~sK~~~~~G~r~------G~~~~~~~~~~~~l~~~~----~~~~ 218 (360)
+|+|+++...+. . ... ...+-...++|++|++.++|+|+ |+++++++++.+.++... .+.+
T Consensus 214 li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t 293 (460)
T PRK13238 214 VVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPT 293 (460)
T ss_pred EEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccccCCccc
Confidence 999997753111 0 000 00001122345555555555553 577764478888887663 2334
Q ss_pred ccC-ChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC
Q 018172 219 IGV-SKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297 (360)
Q Consensus 219 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
++. +...|.+++..+....+. .+.+.. .++++++.+.|++. ++.+..|.|+++.|.+.... .+..-.-..+
T Consensus 294 ~~g~~~~~~~Ala~~l~e~~~~--~~~~~~----~~~~~~l~~~L~~~-G~~~~~p~Gg~~v~~d~~~~-~~~~~~~~~~ 365 (460)
T PRK13238 294 YGGLAGRDMEALAVGLYEGMDE--DYLAYR----IGQVEYLGEGLEEA-GVPIQTPAGGHAVFVDAGKF-LPHIPAEQFP 365 (460)
T ss_pred ccCcHHHHHHHHHhhHHHhhCh--HHHHHH----HHHHHHHHHHHHHC-CCCeEccCCceEEEEEchhc-CCCCCCCCCc
Confidence 444 445577777766632222 334333 33579999999887 67888899998766543110 0000000112
Q ss_pred chHHHHHHHHhhCeeeeCCCCCCC------------CCCeEEEEecC---ChHHHHHHHHHHHHHHhc
Q 018172 298 EDEDCEKLLRAERIMARGGRRFGA------------DAKYARVSMLS---REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 298 ~~~~~~~~l~~~gI~~~pg~~f~~------------~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~ 350 (360)
+.+++..++++.||.+.|+..|.. ...++||++.. +.+.++.+.++|+++.++
T Consensus 366 ~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 366 AQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred hHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 337889999999999999887732 13689999988 999999999999998854
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=216.60 Aligned_cols=286 Identities=17% Similarity=0.142 Sum_probs=228.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCC-CCcEEEcCChHHHHHHHHHhh---cCCCCCCCceEEEeCCCCCCcHHH----HHHhCC
Q 018172 38 VPELAEAINNLHHVVDNAVSD-GRHIVIGTGSTQLYQAALYAL---SSPGGPEPISVVSAAPYYSQYPAE----TDYLRS 109 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~-~~~i~~t~G~t~~l~~~~~~l---~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~ 109 (360)
+++.|+.+++|++. + .++|++|.|+|++++++..++ ..+||+ |++++-.|++.... .+..|+
T Consensus 68 ~e~aRe~va~~~~a------~~~~eIvft~~tT~aln~va~~l~~~~~~gde----Iv~s~~EH~sn~~pw~~~~~~~Ga 137 (405)
T COG0520 68 YEAAREAVARFLNA------DSSDEIVFTRGTTEALNLVARGLGRSLKPGDE----IVVSDLEHHSNIVPWQELAKRTGA 137 (405)
T ss_pred HHHHHHHHHHHhCC------CCCCeEEEeCChhHHHHHHHHHhhhhhcCCCE----EEEccCcchhhHHHHHHHHHhcCc
Confidence 38899999999997 4 478999999999999999999 688998 99999888866544 444589
Q ss_pred eeeeecCCccccc--------cCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccE
Q 018172 110 GLYKWDGDANTFD--------KNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDI 180 (360)
Q Consensus 110 ~~~~~~~~~~~~~--------~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i 180 (360)
+++.++++.++.. .+++||+|.+++.+|.||.+.+ +++.++|+++|+++++|.+++.++.+......+.++
T Consensus 138 ~v~~i~~~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df 217 (405)
T COG0520 138 KVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDF 217 (405)
T ss_pred EEEEEecCCCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCE
Confidence 9999998744332 2588999999999999999999 788888999999999999999999888889999999
Q ss_pred EEecccc-ccCCCCceEEEEeecCHHHHHHHHHHH----------------------hhccccCChHHHHHHHHHhcccC
Q 018172 181 MLFTLSK-CTGHAGSRIGWALVKDTEVARKMTRFI----------------------ELGSIGVSKESQLRAAKILGIVS 237 (360)
Q Consensus 181 ~~~S~sK-~~~~~G~r~G~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~~~~~~~~~l~~~~ 237 (360)
+++|.+| .+|++| +|.+.+ .+++.+.+.... .+...+++.....++.++++.+.
T Consensus 218 ~afsgHKwl~gP~G--iGvLy~-r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~ 294 (405)
T COG0520 218 LAFSGHKWLLGPTG--IGVLYV-RKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLL 294 (405)
T ss_pred EEEcccccccCCCc--eEEEEE-chHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHH
Confidence 9999999 888667 888888 788888873221 11222345555556666777654
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeC
Q 018172 238 DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARG 315 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~p 315 (360)
. ..++++.++.++..+++.+.|++++++.+..+... .....+.+.++. ..++...|.++||.++.
T Consensus 295 ~---ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~----------~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~ 361 (405)
T COG0520 295 E---IGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDA----------DRGGIVSFNVKGIHPHDVATLLDEKGIAVRA 361 (405)
T ss_pred H---HhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcc----------cCceEEEEEeCCCCHHHHHHHHHhCCeEEEe
Confidence 3 55889999999999999999999998888776530 122244555554 39999999999999999
Q ss_pred CCCCCC-------CCCeEEEEecC--ChHHHHHHHHHHHHHHh
Q 018172 316 GRRFGA-------DAKYARVSMLS--REEIFNIFLERLSAIQG 349 (360)
Q Consensus 316 g~~f~~-------~~~~~R~s~~~--~~e~~~~~~~~l~~~~~ 349 (360)
|..+.. .+..+|+|+.. ++||+++++++|+++..
T Consensus 362 g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 362 GHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred ccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 865531 13459999977 99999999999999865
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=219.17 Aligned_cols=294 Identities=12% Similarity=0.140 Sum_probs=206.6
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
+++|+++. ...|+++++++.+. + ++++++|+++++..++.+++++||+ |++++|+|+.+...
T Consensus 77 y~R~~~Pt------~~~Le~~lA~leg~-------~-~~iv~~sG~~Ai~~~l~al~~~Gd~----Vv~~~p~Y~~~~~~ 138 (427)
T PRK07049 77 YSRFNHPN------SEIVEDRLAVYEGA-------E-SAALFSSGMSAIATTLLAFVRPGDV----ILHSQPLYGGTETL 138 (427)
T ss_pred ccCCCCcC------HHHHHHHHHHHhCC-------C-cEEEEccHHHHHHHHHHHHhCCCCE----EEEcCCCcccHHHH
Confidence 35566555 38999999999983 4 5888888889999999999999998 99999999999776
Q ss_pred H----HHhCCeeeeecC--Ccccccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhh------cCcEEEEeec
Q 018172 104 T----DYLRSGLYKWDG--DANTFDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRS------AEGKLIHDLA 163 (360)
Q Consensus 104 ~----~~~g~~~~~~~~--~~~~~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~------~~~~li~D~a 163 (360)
+ ...|++++.++. |.+.++. .+++++|++++||||||.+++ +.+.+++++ +++++|+|++
T Consensus 139 ~~~~l~~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDet 218 (427)
T PRK07049 139 LAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNT 218 (427)
T ss_pred HHHHHHhcCcEEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECC
Confidence 4 456998777752 2222221 257899999999999999999 556666654 6899999999
Q ss_pred ccCCC-CCcCCCCCCccEEEeccccccC-CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCch
Q 018172 164 YYWPQ-YTPITGAADHDIMLFTLSKCTG-HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 164 y~~~~-~~~~~~~~~~~i~~~S~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
|..+. ..++ ..+.++++.|+||.++ .+|+|+||+++ ++++++.+...+...+.+.+++.|.++...++
T Consensus 219 y~~~~~~~pl--~~g~divv~S~SK~~gG~~glr~G~vv~-~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~------- 288 (427)
T PRK07049 219 LLGPVFQKPL--EHGADLSVYSLTKYVGGHSDLVAGAVLG-RKALIRQVRALRSAIGTQLDPHSCWMLGRSLE------- 288 (427)
T ss_pred ccccccCCcc--ccCCCEEEEcCceeecCCCCcEEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCC-------
Confidence 87532 2222 3467899999999999 69999999998 78999999988877777888898888876554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCc---c---cccccccCCCCCCcccccCCch-HHHHHHHHhhCeeee
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLE---Y---CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMAR 314 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~ 314 (360)
.. ....++..++++.+.+.|++++.+..+.+++. . +.+......+.+..+.+.++++ +.+.+.+.+-.+..
T Consensus 289 tl-~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~- 366 (427)
T PRK07049 289 TL-VLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQIFK- 366 (427)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCHHHHHHHHHcCcccE-
Confidence 33 33345558899999999999987766544432 1 1111111224455677887644 44444443334332
Q ss_pred CCCCC--------------------------CCCCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 315 GGRRF--------------------------GADAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 315 pg~~f--------------------------~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
.+..+ |..++.+|||++.+ +.+.+++.|.+.++
T Consensus 367 ~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE--~~~dl~~dl~~al~ 425 (427)
T PRK07049 367 LAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGIE--HPDDLIADLAQALD 425 (427)
T ss_pred EcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCcC--CHHHHHHHHHHHHh
Confidence 11112 12256799999662 24455666666554
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=214.52 Aligned_cols=285 Identities=13% Similarity=0.085 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC--cHHHHHHhCCeeeeecC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ--YPAETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~--~~~~~~~~g~~~~~~~~ 116 (360)
+++|+.++++++. .+++.+++++|+++++..++.+++++|++ |+++.++|.+ +...++..|++++.++.
T Consensus 35 ~~~~~~la~~~g~-----~~~~~~~~~~~~t~al~~~~~~~~~~g~~----vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 105 (356)
T cd06451 35 DEILEGLRYVFQT-----ENGLTFLLSGSGTGAMEAALSNLLEPGDK----VLVGVNGVFGDRWADMAERYGADVDVVEK 105 (356)
T ss_pred HHHHHHHHHHhcC-----CCCCEEEEecCcHHHHHHHHHHhCCCCCE----EEEecCCchhHHHHHHHHHhCCCeEEeec
Confidence 7899999999985 13345788888999999999999999998 9999888775 45678888999998876
Q ss_pred Ccc------cccc--CC-CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccc
Q 018172 117 DAN------TFDK--NN-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLS 186 (360)
Q Consensus 117 ~~~------~~~~--~~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~s 186 (360)
+.+ .+.. ++ ++++|++++|+||||.+++ +.+.++|+++|+++++|++|..+..+......+.++++.|.+
T Consensus 106 ~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~ 185 (356)
T cd06451 106 PWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQ 185 (356)
T ss_pred CCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCc
Confidence 643 2211 34 7899999999999999988 677788888999999999987544332223345678889999
Q ss_pred cccCCCCceEEEEeecCHHHHHHHHH---HH----------h------hccccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 187 KCTGHAGSRIGWALVKDTEVARKMTR---FI----------E------LGSIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 187 K~~~~~G~r~G~~~~~~~~~~~~l~~---~~----------~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
|.++.| .++||++. ++++++.+.. .. . ....+.+...+.++.++++.+.. ..+++.
T Consensus 186 K~l~~p-~g~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~---~~~~~~ 260 (356)
T cd06451 186 KALGAP-PGLGPIAF-SERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILE---EGLENR 260 (356)
T ss_pred hhccCC-CCcceeEE-CHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHH---hhHHHH
Confidence 999843 46899998 7888877753 00 0 12223445555666666664432 556778
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhh-CeeeeCCCCCCCCC
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAE-RIMARGGRRFGADA 323 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~-gI~~~pg~~f~~~~ 323 (360)
.++.+++++++.+.|.+. ++.+..+... ..+.++|+..+. ...+.+.|.++ ||.+++|..+. .+
T Consensus 261 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~g~~~~-~~ 328 (356)
T cd06451 261 WARHRRLAKALREGLEAL-GLKLLAKPEL----------RSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPT-AG 328 (356)
T ss_pred HHHHHHHHHHHHHHHHHc-CCeeccCccc----------CCCceEEEECCCCCCHHHHHHHHHHhCCEEEecccccc-cC
Confidence 888899999999999887 3444322111 111234555543 26777888887 99999987543 25
Q ss_pred CeEEEEecC--ChHHHHHHHHHHHHHHh
Q 018172 324 KYARVSMLS--REEIFNIFLERLSAIQG 349 (360)
Q Consensus 324 ~~~R~s~~~--~~e~~~~~~~~l~~~~~ 349 (360)
+++|+|++. ++|++++++++|.++++
T Consensus 329 ~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 329 KVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 699999965 89999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=216.09 Aligned_cols=271 Identities=16% Similarity=0.110 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC-C
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG-D 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~-~ 117 (360)
.+++++++++++. +++|++++|+++.+ .++..++++||+ |++++|+|..+...++..|.+++.++. |
T Consensus 64 ~~l~~~la~~~~~-------~~~i~~~~G~~~~~-~~l~~~~~~gd~----v~~~~~~~~~~~~~~~~~g~~~~~~~~~d 131 (360)
T TIGR00858 64 EELEEELAEWKGT-------EAALLFSSGYLANV-GVISALVGKGDL----ILSDALNHASLIDGCRLSGARVRRYRHND 131 (360)
T ss_pred HHHHHHHHHHhCC-------CCEEEECchHHHHH-HHHHHhCCCCCE----EEEEccccHHHHHHHHhcCCceEEecCCC
Confidence 6799999999873 35788888865554 567788899998 999999999999999999999887763 3
Q ss_pred cccccc----C--CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCc-------CC--CCCCccEE
Q 018172 118 ANTFDK----N--NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTP-------IT--GAADHDIM 181 (360)
Q Consensus 118 ~~~~~~----~--~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~-------~~--~~~~~~i~ 181 (360)
.+.+.. . +++++|++.+++||||...+ +.+.++|+++++++|+||+|..+.+.. .. ...+++++
T Consensus 132 ~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 211 (360)
T TIGR00858 132 VEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQ 211 (360)
T ss_pred HHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEE
Confidence 333322 1 35788999999999998877 678888998999999999997532211 11 12467999
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc--cccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHH
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG--SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLR 259 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (360)
+.||||.|+++| ||+++ ++++++.+....... +.+.+...+.++.++++.. ...++.+++++++++++.
T Consensus 212 i~s~sK~~~~~g---G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-----~~~~~~~~~~~~~~~~l~ 282 (360)
T TIGR00858 212 VGTLSKALGSYG---AYVAG-SQALIDYLINRARTLIFSTALPPAVAAAALAALELI-----QEEPWRREKLLALIARLR 282 (360)
T ss_pred EEechhhhhccC---cEEEc-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH-----hhCHHHHHHHHHHHHHHH
Confidence 999999999777 99998 888888886543322 2234445444555566532 223567899999999999
Q ss_pred HHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEecC--
Q 018172 260 QVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGA--DAKYARVSMLS-- 332 (360)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~~-- 332 (360)
+.|++++ +.+. + +.++|+|+.++.. ..+.+.|.++||.+.++..++. ..+++|+++..
T Consensus 283 ~~L~~~~-~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~ 347 (360)
T TIGR00858 283 AGLEALG-FTLM-P-------------SCTPIVPVIIGDNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAH 347 (360)
T ss_pred HHHHHcC-CccC-C-------------CCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCC
Confidence 9999874 3332 2 2234778887642 5677888889999998766542 34689999975
Q ss_pred ChHHHHHHHHHHH
Q 018172 333 REEIFNIFLERLS 345 (360)
Q Consensus 333 ~~e~~~~~~~~l~ 345 (360)
+++++++++++|+
T Consensus 348 ~~~~i~~~l~~l~ 360 (360)
T TIGR00858 348 TPGDIDRLAEALK 360 (360)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999999873
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-27 Score=220.84 Aligned_cols=287 Identities=11% Similarity=0.048 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc----CCCCCCCceEEEeCCCCCCcHHH---HHHhCCee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS----SPGGPEPISVVSAAPYYSQYPAE---TDYLRSGL 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~----~~gd~~~~~vl~~~p~~~~~~~~---~~~~g~~~ 111 (360)
+++|+.++++++. ++++|++|+|+++++..++..+. ++|+. |+++...|+.+... ++..|+++
T Consensus 46 ~~~r~~la~~~g~------~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~----vv~~~~~h~s~~~~~~~~~~~g~~v 115 (381)
T PRK02948 46 QVCRKTFAEMIGG------EEQGIYFTSGGTESNYLAIQSLLNALPQNKKH----IITTPMEHASIHSYFQSLESQGYTV 115 (381)
T ss_pred HHHHHHHHHHhCC------CCCeEEEeCcHHHHHHHHHHHHHHhccCCCCE----EEECCcccHHHHHHHHHHHhCCCEE
Confidence 7899999999986 56789999999999999888875 45776 99998777766544 55679999
Q ss_pred eeecCCccc------ccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEE
Q 018172 112 YKWDGDANT------FDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182 (360)
Q Consensus 112 ~~~~~~~~~------~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~ 182 (360)
+.++.+.++ +.. ++++++|++++|+||||.+++ +.+.++|+++|+++++|+++..+..+......+.++++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~ 195 (381)
T PRK02948 116 TEIPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLS 195 (381)
T ss_pred EEEeeCCCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEE
Confidence 988876432 211 357899999999999999999 67778888899999999887765544444566789999
Q ss_pred eccccccCCCCceEEEEeecCHHH-HHHHHH----HHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH
Q 018172 183 FTLSKCTGHAGSRIGWALVKDTEV-ARKMTR----FIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNM 257 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~~~~~~-~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (360)
.|+||.+|++| +|++++ ++++ ...+.. ...+...+.|.+.+.++.++++... +++++.++++++.+++
T Consensus 196 ~s~~K~~gp~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~----~~~~~~~~~~~~~~~~ 268 (381)
T PRK02948 196 VSAHKIYGPKG--VGAVYI-NPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENIL----KNMQEESLRFKELRSY 268 (381)
T ss_pred ecHHhcCCCCc--EEEEEE-cCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 99999999888 788887 4432 111110 0112456788889988888887432 5688889999999999
Q ss_pred HHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--chHHHHHHHHhhCeeeeCCCCC--------------CC
Q 018172 258 LRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--EDEDCEKLLRAERIMARGGRRF--------------GA 321 (360)
Q Consensus 258 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gI~~~pg~~f--------------~~ 321 (360)
+.+.|++++ +.+....... + ..+..+.+.++ +.+.+...|.++||.+++|..+ +.
T Consensus 269 l~~~L~~~~-~~v~~~~~~~--~------~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~ 339 (381)
T PRK02948 269 FLEQIQTLP-LPIEVEGHST--S------CLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGK 339 (381)
T ss_pred HHHHHhcCC-CCEEEeCCCc--c------CcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCC
Confidence 999999884 2222110010 0 01112222223 2355666778899999988742 11
Q ss_pred ----CCCeEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 322 ----DAKYARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 322 ----~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
..+++|+|+.. ++||+++++++|+++++..
T Consensus 340 ~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 375 (381)
T PRK02948 340 TYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQF 375 (381)
T ss_pred ChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 14689999965 9999999999999988764
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=204.25 Aligned_cols=316 Identities=18% Similarity=0.180 Sum_probs=226.9
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhhcCC-CCCCCCcEEEcCChHHHHHHHHHhhcCC-CCCCCceEEEeCCCCCCc
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHVVDN-AVSDGRHIVIGTGSTQLYQAALYALSSP-GGPEPISVVSAAPYYSQY 100 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~-~~~~~~~i~~t~G~t~~l~~~~~~l~~~-gd~~~~~vl~~~p~~~~~ 100 (360)
....|+++.|+ +-+|+.+|+|+.+++. +.++ ++|++|+|++.++..++..++.. .+. |++|.|.|+-|
T Consensus 105 s~GaYS~SqGv-----~~vR~~VA~~I~rRDG~p~~p-~dI~LT~GAS~ai~~il~l~~~~~~~G----vliPiPQYPLY 174 (475)
T KOG0258|consen 105 SLGAYSDSQGV-----PGVRKHVAEFIERRDGIPADP-EDIFLTTGASPAIRSILSLLIAGKKTG----VLIPIPQYPLY 174 (475)
T ss_pred cccccccccCC-----hhHHHHHHHHHHhccCCCCCH-HHeeecCCCcHHHHHHHHHHhcCCCCc----eEeecCCCchh
Confidence 45669999998 9999999999987754 4555 58999999999999999988643 343 99999999999
Q ss_pred HHHHHHhCCeeeeecCCcc--------cccc-------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEe
Q 018172 101 PAETDYLRSGLYKWDGDAN--------TFDK-------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHD 161 (360)
Q Consensus 101 ~~~~~~~g~~~~~~~~~~~--------~~~~-------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D 161 (360)
-..+.++|...+..-+|.+ .+.. .-+++++++.||-||||.++++ .+..+|.+++++++.|
T Consensus 175 sAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaD 254 (475)
T KOG0258|consen 175 SATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLAD 254 (475)
T ss_pred HHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEech
Confidence 9999999998886655532 2222 2378999999999999999994 4556778899999999
Q ss_pred ecccCCCCCcC------C------C-CC-Cc--cEEEecccccc-CCCCceEEEEee--cCHHHHHHHHHHHhhccccCC
Q 018172 162 LAYYWPQYTPI------T------G-AA-DH--DIMLFTLSKCT-GHAGSRIGWALV--KDTEVARKMTRFIELGSIGVS 222 (360)
Q Consensus 162 ~ay~~~~~~~~------~------~-~~-~~--~i~~~S~sK~~-~~~G~r~G~~~~--~~~~~~~~l~~~~~~~~~~~~ 222 (360)
|+|.+.-+.+. . + .. ++ .+.++|.||.+ |=.|-|.||.-. .+++..+.+.+... ...+.+
T Consensus 255 EVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~s-i~lc~~ 333 (475)
T KOG0258|consen 255 EVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLAS-IKLCPQ 333 (475)
T ss_pred HHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHh-hhhcCC
Confidence 99985322221 1 1 11 23 24577889966 458999999643 35777777776654 467788
Q ss_pred hHHHHHHHHHhcccCCC------chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCccc--c
Q 018172 223 KESQLRAAKILGIVSDD------YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAW--L 294 (360)
Q Consensus 223 ~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 294 (360)
...|...-..++..... +......+...++.|...+.+.+++++++.+..++|++|+|.-+..+..+.=.- .
T Consensus 334 V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~ 413 (475)
T KOG0258|consen 334 VSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKAL 413 (475)
T ss_pred ccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHh
Confidence 88888877766644321 225555677788999999999999999999999999998876332222110000 0
Q ss_pred -cCCchHHHHHHHHhhCeeeeCCCCCCCCCC--eEEEEecCCh-HHHHHHHHHHHHHHh
Q 018172 295 -ESKEDEDCEKLLRAERIMARGGRRFGADAK--YARVSMLSRE-EIFNIFLERLSAIQG 349 (360)
Q Consensus 295 -~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~--~~R~s~~~~~-e~~~~~~~~l~~~~~ 349 (360)
..||.--+.++|++.||.++||+.||..+| ++|.++-... +.++++-+.-.+++.
T Consensus 414 ~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~~~~i~~~~~fH~~f~~ 472 (475)
T KOG0258|consen 414 GIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPGLEIIEKFKKFHAEFMD 472 (475)
T ss_pred CCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCchhHHHHHHHHHHHHHHH
Confidence 001213468899999999999999997444 6899885532 444444444444443
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=216.56 Aligned_cols=276 Identities=14% Similarity=0.121 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeec-CC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWD-GD 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~-~~ 117 (360)
.+||++++++++. + ++++++|+++++..++.+++++||+ |++++|+|+++...++..+.+.+.+. .|
T Consensus 86 ~~le~~ia~~~g~-------~-~~ii~~~~~~a~~~~~~~l~~~gd~----vi~~~~~~~s~~~~~~~~~~~~~~~~~~d 153 (393)
T TIGR01822 86 KELEAKIAAFLGT-------E-DTILYASCFDANGGLFETLLGAEDA----IISDALNHASIIDGVRLCKAKRYRYANND 153 (393)
T ss_pred HHHHHHHHHHhCC-------C-cEEEECchHHHHHHHHHHhCCCCCE----EEEeccccHHHHHHHHhcCCceEEeCCCC
Confidence 8899999999995 3 5777788899999999999999998 99999999999998888887765543 34
Q ss_pred cccccc--------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC----c---CCC-CCCccE
Q 018172 118 ANTFDK--------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT----P---ITG-AADHDI 180 (360)
Q Consensus 118 ~~~~~~--------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~----~---~~~-~~~~~i 180 (360)
.+.++. ..++++|++++++||||.+.+ +.+.++|+++|+++|+|++|..+... . ..+ ..+.++
T Consensus 154 ~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di 233 (393)
T TIGR01822 154 MADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDI 233 (393)
T ss_pred HHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeE
Confidence 443322 127889999999999999988 67888899999999999999643211 1 112 235679
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc--cccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG--SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
+++|+||.++ |+|+||+++ ++++++.+....... +.+.++..+.++.++++.+ ...++.+++++++++++
T Consensus 234 ~~~s~sK~l~--g~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~-----~~~~~~~~~~~~~~~~l 305 (393)
T TIGR01822 234 ITGTLGKALG--GASGGFTTA-RKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEML-----EASNELRDRLWANTRYF 305 (393)
T ss_pred EEEEChHHhh--CCCcEEEEe-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHH
Confidence 9999999865 689999998 899999887643222 2223444444555555532 23467788999999999
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCCCCCC---CCCeEEEEecC
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGGRRFGA---DAKYARVSMLS 332 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~~f~~---~~~~~R~s~~~ 332 (360)
.+.|++. ++.+..+.+ .++.+.+++ ...+.+.|.++||.+. +..|.. ....+|+|++.
T Consensus 306 ~~~L~~~-g~~~~~~~~--------------~~~~i~~~~~~~~~~l~~~L~~~gI~v~-~~~~~~~~~~~~~iRis~~~ 369 (393)
T TIGR01822 306 RERMEAA-GFDIKPADH--------------PIIPVMLYDAVLAQRFARRLLEEGIYVT-GFFYPVVPKGQARIRVQISA 369 (393)
T ss_pred HHHHHHc-CCCCCCCCC--------------CEEEEEeCCHHHHHHHHHHHHHCCeeEe-eeCCCCCCCCCceEEEEECC
Confidence 9999886 344332221 133344433 2556667778899997 444531 23469988865
Q ss_pred --ChHHHHHHHHHHHHHHhc
Q 018172 333 --REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 333 --~~e~~~~~~~~l~~~~~~ 350 (360)
+++++++++++|.++.++
T Consensus 370 ~~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 370 AHTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 899999999999998754
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=217.69 Aligned_cols=280 Identities=15% Similarity=0.100 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC---CCCCCCceEEEeCCCCCCcH----HHHHHhCCee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS---PGGPEPISVVSAAPYYSQYP----AETDYLRSGL 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~---~gd~~~~~vl~~~p~~~~~~----~~~~~~g~~~ 111 (360)
.++|+.++++++.. +++++++|+|++++++.++.++.. +|++ |++++++|+... ..++..|+++
T Consensus 46 ~~~~~~la~~~~~~-----~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~----vl~~~~~~~~~~~~~~~~~~~~g~~~ 116 (373)
T cd06453 46 EAAREKVARFINAP-----SPDEIIFTRNTTEAINLVAYGLGRANKPGDE----IVTSVMEHHSNIVPWQQLAERTGAKL 116 (373)
T ss_pred HHHHHHHHHHhCCC-----CCCeEEEeCCHHHHHHHHHHHhhhcCCCCCE----EEECcchhHHHHHHHHHHHhhcCcEE
Confidence 78999999999851 256899999999999999999977 7887 999999998853 3445679999
Q ss_pred eeecCCccc------ccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEE
Q 018172 112 YKWDGDANT------FDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182 (360)
Q Consensus 112 ~~~~~~~~~------~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~ 182 (360)
+.++.+.++ +.. ++++++|++++|+||||...+ +.+.++|+++|+++++|++|..+..+......+.++++
T Consensus 117 ~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~ 196 (373)
T cd06453 117 KVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLA 196 (373)
T ss_pred EEeecCCCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEE
Confidence 988876432 221 458899999999999999988 67888888899999999999865443223345678899
Q ss_pred eccccccCCCCceEEEEeecCHHHHHHHHHHHh---------------------hccccCChHHHHHHHHHhcccCCCch
Q 018172 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFIE---------------------LGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~---------------------~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
+|++|.++. .++|++++ ++++++.+..... +...+.+.....++.++++.+.+
T Consensus 197 ~s~~K~~~~--~g~g~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~--- 270 (373)
T cd06453 197 FSGHKMLGP--TGIGVLYG-KEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEK--- 270 (373)
T ss_pred eccccccCC--CCcEEEEE-chHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHH---
Confidence 999999985 55899998 7888877764321 11123444555555556665433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch--HHHHHHHHhhCeeeeCCCCC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED--EDCEKLLRAERIMARGGRRF 319 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~gI~~~pg~~f 319 (360)
..+++++++.+++++++.+.|++++++.+..+.. ..++++++.+++. +.+.+.|.++||.+.+|..+
T Consensus 271 ~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~~ 339 (373)
T cd06453 271 IGMEAIAAHEHELTAYALERLSEIPGVRVYGDAE-----------DRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHC 339 (373)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCcc-----------ccCCeEEEEECCcCHHHHHHHHHHCCEEeccCccc
Confidence 3457788888899999999999987666542211 1233556666542 77888888999999887643
Q ss_pred CC-------CCCeEEEEecC--ChHHHHHHHHHH
Q 018172 320 GA-------DAKYARVSMLS--REEIFNIFLERL 344 (360)
Q Consensus 320 ~~-------~~~~~R~s~~~--~~e~~~~~~~~l 344 (360)
.. .++++|+|+.. +++++++++++|
T Consensus 340 ~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 340 AQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred hhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 21 25799999975 999999999864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=219.90 Aligned_cols=278 Identities=11% Similarity=0.081 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC-
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD- 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~- 117 (360)
.+|+++++++++. ++.|++++|.+ ++..++.++.++||. |++....|.++...+...|.+++.++.+
T Consensus 157 ~~Lee~La~~~~~-------~~~i~~s~G~~-a~~sai~a~~~~gd~----Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd 224 (481)
T PLN02822 157 LDCETKIAKFLGT-------PDSILYSYGLS-TIFSVIPAFCKKGDI----IVADEGVHWGIQNGLYLSRSTIVYFKHND 224 (481)
T ss_pred HHHHHHHHHHhCC-------CCEEEECCHHH-HHHHHHHHhCCCCCE----EEEeCCccHHHHHHHHHcCCeEEEECCCC
Confidence 9999999999983 46899998877 568899999999997 8888888888878888889999888754
Q ss_pred cccccc-------C----CCe-eEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC-------cCCC--C
Q 018172 118 ANTFDK-------N----NGA-YIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT-------PITG--A 175 (360)
Q Consensus 118 ~~~~~~-------~----~~~-~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~-------~~~~--~ 175 (360)
.+++.. + +++ ++|++..++|+||.+.+ +.+.++|++|++++|+||+|+.+.+. ...+ .
T Consensus 225 ~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~ 304 (481)
T PLN02822 225 MESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPI 304 (481)
T ss_pred HHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCC
Confidence 323322 1 234 78899999999999999 78888999999999999999843221 1111 1
Q ss_pred CCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCC--hHHHHHHHHHhcccCCCchhHHHHHHHHHHH
Q 018172 176 ADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVS--KESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 176 ~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
.+.++++.||||++|++| ||+++ +.++++.++.......++.+ +..+.++.++++.+. ...+.++++++
T Consensus 305 ~~~dii~~s~sKalg~~G---G~i~g-~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~-----~~~~~~~~l~~ 375 (481)
T PLN02822 305 EKIDIITAAMGHALATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-----DNPSVLAKLKE 375 (481)
T ss_pred CCCeEEEecchhhhhhCC---eEEEc-CHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHH-----hCHHHHHHHHH
Confidence 356799999999999899 99998 89999998865544455544 667777777776432 22578889999
Q ss_pred HHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-------h-----HHHHHHHHhhCeeeeCC--CCC
Q 018172 254 RWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-------D-----EDCEKLLRAERIMARGG--RRF 319 (360)
Q Consensus 254 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~l~~~gI~~~pg--~~f 319 (360)
+++++.+.|++..++.+..+.++. ++++.+++ . +.+.++|.++||.+.|+ ..|
T Consensus 376 ~~~~l~~~L~~~~g~~~~~~~~sp-------------i~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~ 442 (481)
T PLN02822 376 NIALLHKGLSDIPGLSIGSNTLSP-------------IVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTL 442 (481)
T ss_pred HHHHHHHHHHhcCCcccCCCCCCC-------------EEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCc
Confidence 999999999987666655444444 44444431 1 33445556889999986 334
Q ss_pred CC--CCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 320 GA--DAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 320 ~~--~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
+. .+.++|++++. ++|++++++++|++++..
T Consensus 443 ~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~ 477 (481)
T PLN02822 443 DKCRLPVGIRLFVSAGHTESDILKASESLKRVAAS 477 (481)
T ss_pred CCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 32 24579998864 999999999999998765
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=212.52 Aligned_cols=277 Identities=11% Similarity=0.051 Sum_probs=197.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
..++++++++++|. +++++|+|+++++..++..++++||+ |+++.++|.+....++..|++++.++.+
T Consensus 46 ~~~l~~~la~~~g~--------~~i~~~~g~t~al~~~l~~~~~~gd~----Vl~~~~~~~~~~~~~~~~g~~~~~v~~~ 113 (361)
T cd06452 46 IKDFHHDLAEFLGM--------DEARVTPGAREGKFAVMHSLCEKGDW----VVVDGLAHYTSYVAAERAGLNVREVPNT 113 (361)
T ss_pred HHHHHHHHHHHcCC--------ceEEEeCCHHHHHHHHHHHhcCCCCE----EEEcCCcchHHHHHHHhcCCEEEEEecC
Confidence 48999999999984 57999999999999999999999998 9999999888888888899999998876
Q ss_pred ccc---ccc-------C-------CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCcc
Q 018172 118 ANT---FDK-------N-------NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHD 179 (360)
Q Consensus 118 ~~~---~~~-------~-------~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~ 179 (360)
.++ ++. + +++++|++++|+||||...+ +.+.++|+++|+++|+|++|..+..+......+.+
T Consensus 114 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d 193 (361)
T cd06452 114 GHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGAD 193 (361)
T ss_pred CCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCC
Confidence 542 211 1 36899999999999999877 67778888899999999999865433222345678
Q ss_pred EEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhcc--------ccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 180 IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGS--------IGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 180 i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
++++|+||.++ ++.|+||+++ ++++++.+.+.+.... .+.+...+.++.++++.. .+++++..+.
T Consensus 194 ~~~~s~~K~l~-~~~~~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~----~~~~~~~~~~- 266 (361)
T cd06452 194 FIVGSGHKSMA-ASAPIGVLAT-TEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHV----KERVKRWDEE- 266 (361)
T ss_pred EEEecCCcccc-CCCCeEEEEE-CHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHH----HHHHHHHHHH-
Confidence 99999999998 5569999998 7888888866543211 111112233333434321 1334433333
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC---------c--hHHHHHHHHhhCeeeeCCCCCC
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK---------E--DEDCEKLLRAERIMARGGRRFG 320 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~~~~~l~~~gI~~~pg~~f~ 320 (360)
.++.+++.+.|++++++.+..+.. +.++|+.++.+ . ...+.+.|+++||.+.+ .+
T Consensus 267 ~~~~~~l~~~L~~l~g~~v~~~~~-----------~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~---~~ 332 (361)
T cd06452 267 VEKARWFVAELEKIEGIKQLGEKP-----------KNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIK---PG 332 (361)
T ss_pred HHHHHHHHHHHhcCCCeEEECCCC-----------CCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEc---CC
Confidence 344578889999986665542111 12223333332 1 13578888889998532 23
Q ss_pred CCCCeEEEEecC-ChHHHHHHHHHHHHHH
Q 018172 321 ADAKYARVSMLS-REEIFNIFLERLSAIQ 348 (360)
Q Consensus 321 ~~~~~~R~s~~~-~~e~~~~~~~~l~~~~ 348 (360)
..+++|++... ++|+++.++++|+++.
T Consensus 333 -~~~~~ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 333 -LTRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred -CceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 25589999844 9999999999999765
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=216.07 Aligned_cols=283 Identities=15% Similarity=0.094 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh---cCCCCCCCceEEEeCCCCCCcH----HHHHHhCCee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL---SSPGGPEPISVVSAAPYYSQYP----AETDYLRSGL 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l---~~~gd~~~~~vl~~~p~~~~~~----~~~~~~g~~~ 111 (360)
+++|+.++++++. ++++|++++|++++++.++.++ +++||+ |++++|+|.+.. ..++..|+++
T Consensus 63 ~~l~~~ia~~~~~------~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~----vl~~~~~~~s~~~~~~~~~~~~g~~~ 132 (397)
T TIGR01976 63 DDAREAVADLLNA------DPPEVVFGANATSLTFLLSRAISRRWGPGDE----VIVTRLDHEANISPWLQAAERAGAKV 132 (397)
T ss_pred HHHHHHHHHHcCC------CCCeEEEeCCHHHHHHHHHHHHHhcCCCCCE----EEEcCCchHhHHHHHHHHHHhcCCEE
Confidence 6899999999986 4457999999999998877765 678998 999999997754 4456689999
Q ss_pred eeecCCccc--cc-----c--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEE
Q 018172 112 YKWDGDANT--FD-----K--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181 (360)
Q Consensus 112 ~~~~~~~~~--~~-----~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~ 181 (360)
+.++.+.+. ++ . ++++++|++++|+||||..++ +.+.++|+++|+++++|+++..+..+......+.+++
T Consensus 133 ~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~ 212 (397)
T TIGR01976 133 KWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFL 212 (397)
T ss_pred EEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEE
Confidence 988776421 11 1 457899999999999999988 6788888889999999999875433322334567888
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc----------cccCChHHHHHHHHHhcccCCC-----------c
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG----------SIGVSKESQLRAAKILGIVSDD-----------Y 240 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~-----------~ 240 (360)
+.|++|.+| .|+|++++ ++++++.+....... ..+.+.....++.++++.+.+. .
T Consensus 213 ~~s~~K~~g---~~~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~ 288 (397)
T TIGR01976 213 TCSAYKFFG---PHMGILWG-RPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERL 288 (397)
T ss_pred EEechhhcC---CceEEEEE-cHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhh
Confidence 999999875 35899998 788887765432211 1223333333444444433211 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~ 318 (360)
..++++.+++..+.++++.+.|++++++.+..+... ...++++.+..++ ...+.+.|.++||.++.|..
T Consensus 289 ~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~ 359 (397)
T TIGR01976 289 VASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARL---------AARVPTVSFTVHGLPPQRVVRRLADQGIDAWAGHF 359 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc---------cCCCceEEEEeCCcCHHHHHHHHHHCCeEEEeCcc
Confidence 113677888888899999999988865655433100 0223355555543 36788888999999998755
Q ss_pred CC--------C--CCCeEEEEecC--ChHHHHHHHHHH
Q 018172 319 FG--------A--DAKYARVSMLS--REEIFNIFLERL 344 (360)
Q Consensus 319 f~--------~--~~~~~R~s~~~--~~e~~~~~~~~l 344 (360)
+. . ..+++|+|+.. +++|+++++++|
T Consensus 360 ~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 360 YAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred chHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 42 1 24689999955 899999998864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=198.82 Aligned_cols=301 Identities=15% Similarity=0.216 Sum_probs=204.5
Q ss_pred cccc-cCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH-HHHHHHHHh-h-c-CCC------CCCCceEEE
Q 018172 24 MSYL-SDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGST-QLYQAALYA-L-S-SPG------GPEPISVVS 92 (360)
Q Consensus 24 ~~~y-~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t-~~l~~~~~~-l-~-~~g------d~~~~~vl~ 92 (360)
...| +...|+ +++|+..++++++ +.++|++..+++ +.++.++.. + . ..| +.+.+++|+
T Consensus 61 ~RNY~G~l~Gi-----pe~r~l~a~llgv------~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLC 129 (425)
T PF12897_consen 61 CRNYPGGLDGI-----PEARELFAELLGV------PPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLC 129 (425)
T ss_dssp TTSS-S-SS-------HHHHHHHHHHHTS-------GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEE
T ss_pred ccCCCCccCCh-----HHHHHHHHHHhCC------CHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEe
Confidence 3568 788888 9999999999998 778999885544 444443332 2 1 112 234578999
Q ss_pred eCCCCCCcHHHHHHhCCeeeeecCCcccccc---------CCCeeEE-EEcCCCCCCcccchHH-HHHHh----hhcCcE
Q 018172 93 AAPYYSQYPAETDYLRSGLYKWDGDANTFDK---------NNGAYIE-VVNSPNNPDGTIREAV-LAKVN----RSAEGK 157 (360)
Q Consensus 93 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~i-~~~~p~NPtG~~~~~~-~~~~~----~~~~~~ 157 (360)
|.|+|.....+++.+|.+.+++|++.+|-+. |+..|.+ +++..+||||+++|++ .++++ ...+..
T Consensus 130 PvPGYDRHFai~E~~Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFR 209 (425)
T PF12897_consen 130 PVPGYDRHFAITEHFGIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFR 209 (425)
T ss_dssp EES--HHHHHHHHHCT-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-E
T ss_pred cCCCchHHHHHHHhhCcEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeE
Confidence 9999999999999999999999988766543 6788887 6678899999999953 33333 238999
Q ss_pred EEEeecccCCCC------Cc---C------CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCC
Q 018172 158 LIHDLAYYWPQY------TP---I------TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVS 222 (360)
Q Consensus 158 li~D~ay~~~~~------~~---~------~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (360)
|+.|+||..-++ .. + .+..++++.+.|+||+.- +|.+++++.+ +++.++.+.+.....+.+..
T Consensus 210 I~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf-~GaGva~~aa-S~~Nl~~~~~~~~~~tIgpd 287 (425)
T PF12897_consen 210 IFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITF-PGAGVAFFAA-SEANLAWIKKHLSVQTIGPD 287 (425)
T ss_dssp EEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEEEE--HHHHHHHHHHHHHH-S---
T ss_pred EEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEeccccccc-CCcceeeeec-CHHHHHHHHHHhcCceeCcc
Confidence 999999984222 11 1 257899999999999664 9999999998 89999999888888899999
Q ss_pred hHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc-----CCcccCCCCCcccccccccCCCCCCcccccCC
Q 018172 223 KESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS-----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297 (360)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
.+.|..-..+|....++.+.||++.++.++-+.+.+.+.|.+. +...+..|.|++ |++++..
T Consensus 288 KvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGY-------------FIsld~~ 354 (425)
T PF12897_consen 288 KVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGY-------------FISLDVL 354 (425)
T ss_dssp HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS--------------EEEEES
T ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCce-------------EEEEecC
Confidence 9999999999986654677999999999999999888877543 345677888777 9999998
Q ss_pred ch--HHHHHHHHhhCeeeeC-CCCCC--C--CCCeEEEEecC-ChHHHHHHHHHHHHHHhc
Q 018172 298 ED--EDCEKLLRAERIMARG-GRRFG--A--DAKYARVSMLS-REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 298 ~~--~~~~~~l~~~gI~~~p-g~~f~--~--~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~ 350 (360)
++ ..+.++.++.||.+.| |..|. . .+..+|++.+- +.|+++.+++.+.-.+.-
T Consensus 355 ~G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~l 415 (425)
T PF12897_consen 355 DGTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVKL 415 (425)
T ss_dssp TT-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 87 8899999999999999 77773 2 35689999877 789999999998877653
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=215.53 Aligned_cols=289 Identities=16% Similarity=0.110 Sum_probs=202.9
Q ss_pred ccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY 106 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~ 106 (360)
|+...+. .+||+++|+|++. ++.|++++|. .++..++.+++++||. |++++|+|.++...++.
T Consensus 142 ~g~~~~~-----~ele~~lA~~~g~-------~~ai~~~~G~-~an~~~i~al~~~Gd~----Vi~d~~~h~s~~~~~~~ 204 (489)
T PLN02483 142 GGTTKLH-----RELEELVARFVGK-------PAAIVFGMGY-ATNSTIIPALIGKGGL----IISDSLNHNSIVNGARG 204 (489)
T ss_pred cCCcHHH-----HHHHHHHHHHhCC-------CcEEEECCHH-HHHHHHHHHhCCCCCE----EEEcchhhHHHHHHHHH
Confidence 5555555 9999999999994 5578888874 4455778889999998 99999999999999999
Q ss_pred hCCeeeeecCC-cccccc---------CCC-----eeEEEEc-CCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC
Q 018172 107 LRSGLYKWDGD-ANTFDK---------NNG-----AYIEVVN-SPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 107 ~g~~~~~~~~~-~~~~~~---------~~~-----~~~i~~~-~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
.|++++.++.+ .+.++. .++ .++++++ ...|++|...+ +.+.++|+++++++|+||+|+.+..
T Consensus 205 ~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~ 284 (489)
T PLN02483 205 SGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAV 284 (489)
T ss_pred cCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCcc
Confidence 99999988754 222211 122 2555444 45689999988 7788889999999999999974211
Q ss_pred -------CcCC--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc--cccCChHHHHHHHHHhcccCC
Q 018172 170 -------TPIT--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG--SIGVSKESQLRAAKILGIVSD 238 (360)
Q Consensus 170 -------~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~ 238 (360)
.... ...+.+++++||||+||++| ||+++ ++++++.+....... +.+.+++...++.++++.+..
T Consensus 285 G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G---G~i~~-~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~ 360 (489)
T PLN02483 285 GKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG---GYIAG-SKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILG 360 (489)
T ss_pred CCCCCchHHhcCCCcccCcEEEEecchhcccCc---eEEEc-CHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHh
Confidence 1111 23467899999999999887 99998 899999998764321 222333333345555653321
Q ss_pred -CchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeee
Q 018172 239 -DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMAR 314 (360)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~ 314 (360)
+......+.+++++++++++.+.|++++ +.+..+.++. .+|+.+.. ...+.+.|.++||.++
T Consensus 361 ~~g~~~~~~~~~~l~~~~~~l~~~L~~~G-~~v~~~~~sp-------------~~~l~l~~~~~~~~~~~~Ll~~GI~v~ 426 (489)
T PLN02483 361 EDGTNRGAQKLAQIRENSNFFRSELQKMG-FEVLGDNDSP-------------VMPIMLYNPAKIPAFSRECLKQNVAVV 426 (489)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHCC-CcccCCCCCC-------------EEEEEECCHHHHHHHHHHHHHCCcEEe
Confidence 1114555668899999999999999984 4443332221 22332222 2445566667899999
Q ss_pred CCCCCCC---CCCeEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 315 GGRRFGA---DAKYARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 315 pg~~f~~---~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
| ..|.. ..+.+||+++. ++|++++++++|.++++..
T Consensus 427 ~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 427 V-VGFPATPLLLARARICISASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred e-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 7 44522 24689999965 9999999999999998643
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-26 Score=212.94 Aligned_cols=288 Identities=16% Similarity=0.095 Sum_probs=210.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc---CCCCCCCceEEEeCCCCCCcHHHH---HHhCCee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS---SPGGPEPISVVSAAPYYSQYPAET---DYLRSGL 111 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~---~~gd~~~~~vl~~~p~~~~~~~~~---~~~g~~~ 111 (360)
.+++|+.++++++. ++++|++|+|+|++++.++..+. .+++. |+++..+|+.+...+ +..|+++
T Consensus 44 ~~~~r~~la~~~g~------~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~----vv~~~~~~~s~~~~~~~~~~~G~~v 113 (379)
T TIGR03402 44 VEEAREQVAKLLGA------EPDEIIFTSGGTESDNTAIKSALAAQPEKRH----IITTAVEHPAVLSLCQHLEKQGYKV 113 (379)
T ss_pred HHHHHHHHHHHhCC------CCCeEEEeCcHHHHHHHHHHHHHHhcCCCCe----EEEcccccHHHHHHHHHHHHcCCEE
Confidence 37889999999986 55689999999999999888764 34566 999998888776443 3459999
Q ss_pred eeecCCccc-ccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEE
Q 018172 112 YKWDGDANT-FDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182 (360)
Q Consensus 112 ~~~~~~~~~-~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~ 182 (360)
+.++.+.++ ++. +++++++++++++||||..++ +.+.++|+++|+++++|++++.+..+......+.++++
T Consensus 114 ~~v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~ 193 (379)
T TIGR03402 114 TYLPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLS 193 (379)
T ss_pred EEEccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEE
Confidence 988876443 211 468899999999999999999 67788899899999999999876655444566788999
Q ss_pred eccccccCCCCceEEEEeecCHHHHHHHHHHH-------hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 018172 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFI-------ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERW 255 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (360)
.|.+|.+|++| +|+++.++ +.. +.... .....+.+.+...++.++++.+. +++++..++.++++
T Consensus 194 ~s~~K~~gp~G--~g~l~v~~-~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~----~~~~~~~~~~~~l~ 264 (379)
T TIGR03402 194 LSGHKLHGPKG--VGALYIRK-GTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELAT----EHLEEENTRVRALR 264 (379)
T ss_pred EcHHHcCCCCc--eEEEEECC-CCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHH----HhHHHHHHHHHHHH
Confidence 99999888777 77777633 221 11110 11234566666666777776543 56788888999999
Q ss_pred HHHHHHHHh-cCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCC------------
Q 018172 256 NMLRQVIRQ-SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGAD------------ 322 (360)
Q Consensus 256 ~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~------------ 322 (360)
+++.+.|++ ++++.+..+.... .+....+|+...+.+++...|.++||.+++|..|...
T Consensus 265 ~~l~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg 336 (379)
T TIGR03402 265 DRLEAGLLARIPDARLNGDPTKR--------LPNTVNISFEYIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMG 336 (379)
T ss_pred HHHHHHHHhhCCCEEEeCCCccC--------CCCEEEEEecCCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcC
Confidence 999999985 7666554332110 0111134555445577778889999999998766321
Q ss_pred ------CCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 323 ------AKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 323 ------~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
.+.+|+|+.. ++||+++++++|+++++..+
T Consensus 337 ~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~ 374 (379)
T TIGR03402 337 VPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLR 374 (379)
T ss_pred CChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3689999976 89999999999999987644
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=211.64 Aligned_cols=292 Identities=14% Similarity=0.108 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc-----CCC-CCCCceEEEeCCCCCCcHHH---HHHhCC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS-----SPG-GPEPISVVSAAPYYSQYPAE---TDYLRS 109 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~-----~~g-d~~~~~vl~~~p~~~~~~~~---~~~~g~ 109 (360)
+.++++++++....+. .++++|++|+|+|++++.++.++. +++ ++ |+++.+.|+.+... ++..|+
T Consensus 42 ~~l~~a~~~~~~~~~~--~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~----vi~~~~e~ps~~~~~~~~~~~G~ 115 (382)
T TIGR03403 42 PAIAEALDKLYKGINA--RDLDDIIITSCATESNNWVLKGVYFDEILKGGKNH----IITTEVEHPAVRATCAFLESLGV 115 (382)
T ss_pred HHHHHHHHHHHHHcCc--CCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCE----EEEcCCccHHHHHHHHHHHHCCC
Confidence 7888888877643222 234689999999999999988763 454 55 99998887766554 455799
Q ss_pred eeeeecCCcccc-c-----c--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccE
Q 018172 110 GLYKWDGDANTF-D-----K--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDI 180 (360)
Q Consensus 110 ~~~~~~~~~~~~-~-----~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i 180 (360)
+++.++.+.++. + . +++++++++++||||||.+++ +.+.++|+++|+++++|+++..+..+......+.++
T Consensus 116 ~v~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~ 195 (382)
T TIGR03403 116 EVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDF 195 (382)
T ss_pred EEEEEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCE
Confidence 999998764322 1 1 457899999999999999998 677788888999999999988655443334556789
Q ss_pred EEeccccccCCCCceEEEEeecCHH-HHHHH---HHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTE-VARKM---TRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWN 256 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~-~~~~l---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (360)
++.|++|.+|++| +|+++.++.. +...+ .........+.|.+.+.++.++++... ++++..++++++.++
T Consensus 196 ~~~s~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~----~~~~~~~~~~~~l~~ 269 (382)
T TIGR03403 196 LSFSAHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLAN----EYLDFEKSHVRRLRD 269 (382)
T ss_pred EEEcchhhCCCCc--eEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHH----HhHHHHHHHHHHHHH
Confidence 9999999988888 5777653221 10111 001112345677888888888776432 557888899999999
Q ss_pred HHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCCCC--------------
Q 018172 257 MLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRRFG-------------- 320 (360)
Q Consensus 257 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~f~-------------- 320 (360)
++.+.|++++++.+..+... ..++++.+.+++ .+.+...|.++||.++.|..+.
T Consensus 270 ~l~~~L~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g 339 (382)
T TIGR03403 270 RLEDALLELPDVFVVGDREH----------RVPNTILISIKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIG 339 (382)
T ss_pred HHHHHHhcCCCEEEECCCCC----------CcCCEEEEEeCCCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcC
Confidence 99999998877766543210 122344455543 3666667889999999875442
Q ss_pred C----CCCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 321 A----DAKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 321 ~----~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
. ..+.+|+|+.. ++||+++++++|++++.+.+
T Consensus 340 ~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~ 377 (382)
T TIGR03403 340 ADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLR 377 (382)
T ss_pred CChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 13579999976 89999999999999987654
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=204.64 Aligned_cols=283 Identities=14% Similarity=0.124 Sum_probs=208.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCC--cEEEcCChHHHHHHHHHhhcCCCCCCCceEEEe-CCCCCC-cHHHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGR--HIVIGTGSTQLYQAALYALSSPGGPEPISVVSA-APYYSQ-YPAETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~--~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~-~p~~~~-~~~~~~~~g~~~~~ 113 (360)
.+++|+.++++++. +++ .|++++|+++++..++..++.++|. +++. .+.|+. +...++..|.+++.
T Consensus 33 ~~~~~~~la~~~~~------~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~----vi~~~~~~~~~~~~~~a~~~g~~~~~ 102 (355)
T TIGR03301 33 TDQVRDRLLALAGG------DDNHTCVLLQGSGTFAVEATIGSLVPRDGK----LLVLINGAYGERLAKICEYLGIPHTD 102 (355)
T ss_pred HHHHHHHHHHHhcC------CCCCcEEEEeCCcHHHHHHHHHhccCCCCe----EEEECCCchhhHHHHHHHHcCCceEE
Confidence 38999999999986 332 5788999999999999999888876 5554 455554 45677888999998
Q ss_pred ecCCcc-cc-----cc----CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEE
Q 018172 114 WDGDAN-TF-----DK----NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182 (360)
Q Consensus 114 ~~~~~~-~~-----~~----~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~ 182 (360)
++.+.+ .+ +. +++++++++++++||||...+ +++.++|+++++++|+|++++.+..+......+.++++
T Consensus 103 i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~ 182 (355)
T TIGR03301 103 LNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALI 182 (355)
T ss_pred EecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEE
Confidence 876532 22 21 246678888999999999988 67888888899999999988765443333456788999
Q ss_pred ecccccc-CCCCceEEEEeecCHHHHHHHHHHH-----------------hhccccCChHHHHHHHHHhcccCCCchhHH
Q 018172 183 FTLSKCT-GHAGSRIGWALVKDTEVARKMTRFI-----------------ELGSIGVSKESQLRAAKILGIVSDDYPNFF 244 (360)
Q Consensus 183 ~S~sK~~-~~~G~r~G~~~~~~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (360)
.|++|.+ +++| +||+++ ++++++.+.... ....++.+...+.++.++++.+.+. ..+
T Consensus 183 ~s~~K~l~~~~G--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~--g~~ 257 (355)
T TIGR03301 183 ASANKCLEGVPG--FGFVIA-RRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAE--GGV 257 (355)
T ss_pred ecCCcccccCCc--eeEEEE-CHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHc--ccH
Confidence 9999976 5566 799998 788887765210 1123456777788877777755332 347
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----h-HHHHHHHHhhCeeeeCCCCC
Q 018172 245 EYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----D-EDCEKLLRAERIMARGGRRF 319 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~gI~~~pg~~f 319 (360)
++.+++++++++++.+.|++++ +.+..+... ..+.++|+.++. . +++.+.|.++||.+.+|..+
T Consensus 258 ~~~~~~~~~~~~~~~~~L~~~g-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~ 326 (355)
T TIGR03301 258 PARIARYRRNRELLVDGLRALG-FQPLLPERW----------QSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLT 326 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CeeecCCCC----------CCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccc
Confidence 8888899999999999998874 443222110 112245666653 1 57888999999999998755
Q ss_pred CCCCCeEEEEecC--ChHHHHHHHHHHHHHH
Q 018172 320 GADAKYARVSMLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 320 ~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~ 348 (360)
. .+++||++.. ++|++++++++|++++
T Consensus 327 ~--~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 327 L--ADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred c--ccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 4 2799999744 8999999999998763
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=202.19 Aligned_cols=294 Identities=17% Similarity=0.087 Sum_probs=229.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc--CCCCCCCceEEEeCCCCCCcHHHHHHh---CCeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS--SPGGPEPISVVSAAPYYSQYPAETDYL---RSGLY 112 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~--~~gd~~~~~vl~~~p~~~~~~~~~~~~---g~~~~ 112 (360)
.++.|+++++.+|. ++++|++|+|+||+.++++.+.+ .+....+.+++++.-.|+++...++.+ |.++.
T Consensus 46 ve~AR~~iA~llga------~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vt 119 (386)
T COG1104 46 VEEAREQIAKLLGA------DPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVT 119 (386)
T ss_pred HHHHHHHHHHHhCC------CCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEE
Confidence 38899999999997 56799999999999999999842 211112235999999999999998887 99999
Q ss_pred eecCCcccccc--------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEe
Q 018172 113 KWDGDANTFDK--------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLF 183 (360)
Q Consensus 113 ~~~~~~~~~~~--------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~ 183 (360)
.++++.+|... .++|.+|.+...||.||.+.| +++.++|+++++++++|.+++.+..+-.....+.++...
T Consensus 120 yl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~ 199 (386)
T COG1104 120 YLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSF 199 (386)
T ss_pred EeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceeccccccCcceEEe
Confidence 99999776644 478999999999999999999 889999999999999999999887777777777899999
Q ss_pred ccccccCCCCceEEEEeecCHHHHHHH----HHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHH
Q 018172 184 TLSKCTGHAGSRIGWALVKDTEVARKM----TRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLR 259 (360)
Q Consensus 184 S~sK~~~~~G~r~G~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (360)
|-+|+.|+.| +|+++.++.--.+.+ .+.+...+.+.|.+...+...+++... +.++....+++..|+++.
T Consensus 200 SaHK~~GpkG--iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~----~~~~~~~~~~~~lr~~l~ 273 (386)
T COG1104 200 SAHKFGGPKG--IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAV----EELEEENARLRKLRDRLE 273 (386)
T ss_pred ehhhccCCCc--eEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 9999999888 787776332222222 223334556677777777777776433 778888889999999999
Q ss_pred HHHHhc-CCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCCCCCC--------------
Q 018172 260 QVIRQS-GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRRFGAD-------------- 322 (360)
Q Consensus 260 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~f~~~-------------- 322 (360)
+.|.+. +.+.+.... ....++.+.+.+++ ++.+...|..+||.+..|+.+...
T Consensus 274 ~~l~~~~p~~~~~g~~----------~~rlP~~~~~~f~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~ 343 (386)
T COG1104 274 DGLLEIIPDVYLNGDD----------EPRLPNILNFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGIS 343 (386)
T ss_pred HHHHhcCCcEEEcCCc----------ccCCCCeEEEEeCCCcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCC
Confidence 999976 554443221 11333445555554 388999999999999999877421
Q ss_pred ----CCeEEEEecC--ChHHHHHHHHHHHHHHhchhc
Q 018172 323 ----AKYARVSMLS--REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 323 ----~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~~ 353 (360)
.+.+||||+. ++||++.+++++.+++++.|.
T Consensus 344 ~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~ 380 (386)
T COG1104 344 EELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRE 380 (386)
T ss_pred hHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3579999987 899999999999999998764
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-25 Score=204.82 Aligned_cols=289 Identities=10% Similarity=0.033 Sum_probs=209.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCC--CcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc--HHHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDG--RHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY--PAETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~--~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~--~~~~~~~g~~~~~ 113 (360)
..++|+.++++++. ++ +.|++++|+++++..++..+..+||. ++++.+++... ...++..|++++.
T Consensus 39 ~~~~~~~l~~l~~~------~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~----vlv~~~~~~~~~~~~~~~~~g~~~~~ 108 (368)
T PRK13479 39 TASVRAKLVAIATG------EEGYTCVPLQGSGTFSVEAAIGSLVPRDGK----VLVPDNGAYGARIAQIAEYLGIAHVV 108 (368)
T ss_pred HHHHHHHHHHHhCC------CCCceEEEEcCCcHHHHHHHHHhccCCCCe----EEEEeCCchHHHHHHHHHHcCCcEEE
Confidence 38999999999885 32 45889999999999999999998987 88888877665 4777888999998
Q ss_pred ecCCcc-cccc---------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEE
Q 018172 114 WDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182 (360)
Q Consensus 114 ~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~ 182 (360)
++.+.+ .++. .++++++++++|+||||...+ +.+.++|+++++++|+|+++..+..+......+.++++
T Consensus 109 i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v 188 (368)
T PRK13479 109 LDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALI 188 (368)
T ss_pred EECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEE
Confidence 887632 2211 245678999999999999988 67788888899999999877654433222344567889
Q ss_pred ecccccc-CCCCceEEEEeecCHHHHHHHHHHHh-----------------hccccCChHHHHHHHHHhcccCCCchhHH
Q 018172 183 FTLSKCT-GHAGSRIGWALVKDTEVARKMTRFIE-----------------LGSIGVSKESQLRAAKILGIVSDDYPNFF 244 (360)
Q Consensus 183 ~S~sK~~-~~~G~r~G~~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (360)
.|++|.+ |++| +||+++ ++++++.+..... ...++.+.+.+.++.++++.+.+. .++
T Consensus 189 ~s~~K~l~g~~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~--~~~ 263 (368)
T PRK13479 189 SSANKCIEGVPG--FGFVIA-RRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEE--GGV 263 (368)
T ss_pred ecCccccccCCC--ceEEEE-CHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHh--hCH
Confidence 9999965 7778 699998 7888777654321 111356666666777777654332 457
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC---chHHHHHHHHhhCeeeeCCCCCCC
Q 018172 245 EYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK---EDEDCEKLLRAERIMARGGRRFGA 321 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gI~~~pg~~f~~ 321 (360)
++.++++.++++++.+.|++++ +.+..+.. . ..+... .+++... +.+.+.+.|.++||.+++|..+.
T Consensus 264 ~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~-~------~~~~~~-~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~- 333 (368)
T PRK13479 264 PARGARYANNQRTLVAGMRALG-FEPLLDAE-I------QSPIIV-TFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQ- 333 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CcccCCch-h------cCceEE-EEECCCCCCcCHHHHHHHHHHCCEEEecCCCCC-
Confidence 7888999999999999999984 33322211 0 000011 1232221 23678888999999999986442
Q ss_pred CCCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 322 DAKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 322 ~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
.+++|++... ++|++++++++|++++.+..
T Consensus 334 -~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~ 365 (368)
T PRK13479 334 -VDTFRIGCIGDVDAADIRRLVAAIAEALYWMG 365 (368)
T ss_pred -CCEEEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4689998634 99999999999999987653
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=210.20 Aligned_cols=276 Identities=15% Similarity=0.133 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC--CCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS--PGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~--~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
.+|+++++++++. ++.|++++| ++++..++..+.. +|+. |+++.+.|..+...++..|.++..++.
T Consensus 94 ~~Le~~la~~~g~-------~~~i~~~sG-~~a~~~~i~~l~~~~~g~~----vi~~~~~h~s~~~~~~~~g~~~~~~~~ 161 (410)
T PRK13392 94 VLLERELADLHGK-------ESALLFTSG-YVSNDAALSTLGKLLPGCV----ILSDALNHASMIEGIRRSGAEKQVFRH 161 (410)
T ss_pred HHHHHHHHHHhCC-------CCEEEECcH-HHHHHHHHHHHhcCCCCCE----EEEehhhhHHHHHHHHHcCCeEEEEeC
Confidence 6788888888773 457888887 5666677776643 6776 888777888888888888998877753
Q ss_pred C-cccccc------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC----CcCC---CCC-CccE
Q 018172 117 D-ANTFDK------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY----TPIT---GAA-DHDI 180 (360)
Q Consensus 117 ~-~~~~~~------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~----~~~~---~~~-~~~i 180 (360)
+ .+.+.. ++++++|++++|+||||.+++ +.+.++|+++++++|+||+|..+.+ .... +.. ..++
T Consensus 162 ~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~di 241 (410)
T PRK13392 162 NDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDM 241 (410)
T ss_pred CCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcE
Confidence 2 111111 357899999999999999988 6788889889999999999983221 1111 112 2358
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh--ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL--GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
+++||||.||++| ||+++ ++++++.+++.... .+.+.+++.+.++.++|+.+. .....+++++++++++
T Consensus 242 v~~tlsK~~g~~G---G~~~~-~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~-----~~~~~~~~~~~~~~~l 312 (410)
T PRK13392 242 IQGTLAKAFGCLG---GYIAA-SADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLK-----TSQTERDAHQDRVAAL 312 (410)
T ss_pred EEEEChHhhhccc---chhhc-CHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHH
Confidence 8999999999888 99988 89999988876542 233456677888878887432 2234567789999999
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHH-HhhCeeeeCCCCCCC--CCCeEEEEec-
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLL-RAERIMARGGRRFGA--DAKYARVSML- 331 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l-~~~gI~~~pg~~f~~--~~~~~R~s~~- 331 (360)
.+.|++.+ +.+..+. ++|+.+.+++. ..+.+.| .++||.++++..... +..++|+++.
T Consensus 313 ~~~L~~~g-~~~~~~~--------------~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~ 377 (410)
T PRK13392 313 KAKLNANG-IPVMPSP--------------SHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTP 377 (410)
T ss_pred HHHHHHcC-CCCCCCC--------------CCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECC
Confidence 99999873 4433222 22333333332 4455555 578999998654332 3468999985
Q ss_pred -CChHHHHHHHHHHHHHHhc
Q 018172 332 -SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 332 -~~~e~~~~~~~~l~~~~~~ 350 (360)
.++|++++++++|.++.++
T Consensus 378 ~~t~edid~l~~aL~~~~~~ 397 (410)
T PRK13392 378 LHDDEDIDALVAALVAIWDR 397 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 3999999999999998764
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=203.84 Aligned_cols=284 Identities=12% Similarity=0.045 Sum_probs=207.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCC--CcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc--HHHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDG--RHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY--PAETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~--~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~--~~~~~~~g~~~~~ 113 (360)
.+++|+.++++++. ++ ++|++|+|+|++++.++..+..+||. +++..+.+.+. ...++..|.+++.
T Consensus 37 ~~~~r~~la~l~~~------~~~~~~i~~t~~~t~al~~~~~~l~~~~~~----vlv~~~~~~~~~~~~~a~~~g~~~~~ 106 (363)
T TIGR02326 37 VEQIRQQLLALATA------EEGYTSVLLQGSGTFAVEAVIGSAVPKDGK----LLVVINGAYGARIVQIAEYLGIPHHV 106 (363)
T ss_pred HHHHHHHHHHHhCC------CCCceEEEEcCCCHHHHHHHHHhcCCCCCe----EEEEeCChhhHHHHHHHHHcCCceEE
Confidence 37889999999986 43 36999999999999999999888886 66655544433 4667888999998
Q ss_pred ecCCcc-cccc---------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEE
Q 018172 114 WDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182 (360)
Q Consensus 114 ~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~ 182 (360)
++.+.+ .++. +++++++++++++||||..++ +.+.++|+++|+++++|++++.+..+......+.++++
T Consensus 107 v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~ 186 (363)
T TIGR02326 107 VDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLI 186 (363)
T ss_pred EeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEE
Confidence 887642 2221 245678899999999999998 77888888899999999988865544334555678999
Q ss_pred ecccccc-CCCCceEEEEeecCHHHHHHHHHHH------------------hhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 183 FTLSKCT-GHAGSRIGWALVKDTEVARKMTRFI------------------ELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 183 ~S~sK~~-~~~G~r~G~~~~~~~~~~~~l~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
+|++|.+ +++| +||+++ +++.++.+.... ....++.+.+.+.++.++++.+.+. ..
T Consensus 187 ~s~~K~l~~p~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~--g~ 261 (363)
T TIGR02326 187 SSANKCIQGVPG--FGFVIA-RQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKE--GG 261 (363)
T ss_pred ecCccccccCCc--ceEEEE-CHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHh--hC
Confidence 9999977 5566 799998 677766543210 0112356778888877777654332 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----hHHHHHHHHhhCeeeeCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----DEDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gI~~~pg~~ 318 (360)
+++.+++++++++++.+.|++++ +....+... ..+...++.+++ ...+.+.|+++||.+.||..
T Consensus 262 ~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~ 330 (363)
T TIGR02326 262 VAARHQRYQQNQKTLVAGMRALG-FEPLLDDEI----------QSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKV 330 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CeeccCccc----------CCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcC
Confidence 77888999999999999998884 333222110 111123445443 26678888999999999876
Q ss_pred CCCCCCeEEEEe-cC-ChHHHHHHHHHHHHHHh
Q 018172 319 FGADAKYARVSM-LS-REEIFNIFLERLSAIQG 349 (360)
Q Consensus 319 f~~~~~~~R~s~-~~-~~e~~~~~~~~l~~~~~ 349 (360)
+. .+++|+++ +. +.|++++++++|++++.
T Consensus 331 ~~--~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 331 SQ--VDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred CC--CCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 63 46899995 43 99999999999998764
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=204.71 Aligned_cols=275 Identities=19% Similarity=0.190 Sum_probs=199.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC-
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG- 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~- 116 (360)
..++++.++++++. ++.++ ++++++++..++..++++||. |++++|+|.++...++..|++++.++.
T Consensus 48 ~~~l~~~la~~~~~-------~~~iv-~~sg~~a~~~~~~~~~~~gd~----Vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 115 (349)
T cd06454 48 HEELEEELAEFHGK-------EAALV-FSSGYAANDGVLSTLAGKGDL----IISDSLNHASIIDGIRLSGAKKRIFKHN 115 (349)
T ss_pred HHHHHHHHHHHhCC-------CCEEE-eccHHHHHHHHHHHhcCCCCE----EEEehhhhHHHHHHHHHcCCceEEecCC
Confidence 38999999999984 33444 555577888888888899998 999999999999889999999987753
Q ss_pred Ccccccc---C----CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCc-------C-CCCCCccE
Q 018172 117 DANTFDK---N----NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTP-------I-TGAADHDI 180 (360)
Q Consensus 117 ~~~~~~~---~----~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~-------~-~~~~~~~i 180 (360)
+.+.++. . ++++++++++++||||...+ +.+.++|+++|+++|+|++|..+.... . ....+.++
T Consensus 116 ~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i 195 (349)
T cd06454 116 DMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDI 195 (349)
T ss_pred CHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcE
Confidence 3232222 1 45788899999999999988 677888999999999999997432211 1 13456789
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh--ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL--GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
+++|+||.++++| ||+++ ++++.+.+...... .+.+.++..+.++.+.++... . .+..+++++++++.+
T Consensus 196 ~~~s~sK~~~~~g---G~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~~l 266 (349)
T cd06454 196 IMGTLGKAFGAVG---GYIAG-SKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQ----G-GPERRERLQENVRYL 266 (349)
T ss_pred EEeechhhhcccC---CEEEC-CHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHh----c-CHHHHHHHHHHHHHH
Confidence 9999999998766 99988 78888887654332 223566677777777776442 2 466788999999999
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC---chHHHHHHHHhhCeeeeCCCCCC--CCCCeEEEEecC-
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK---EDEDCEKLLRAERIMARGGRRFG--ADAKYARVSMLS- 332 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gI~~~pg~~f~--~~~~~~R~s~~~- 332 (360)
.+.|.+++ +....+.+.. +.++..+ +.+++.+.|.++||.+.++.... ...+++|++++.
T Consensus 267 ~~~l~~~g-~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~ 332 (349)
T cd06454 267 RRGLKELG-FPVGGSPSHI-------------IPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAA 332 (349)
T ss_pred HHHHHhcC-CcccCCCCCc-------------EEEEeCCChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCC
Confidence 99998874 3333222111 2233333 12677778888899999864221 124799999975
Q ss_pred -ChHHHHHHHHHHHHH
Q 018172 333 -REEIFNIFLERLSAI 347 (360)
Q Consensus 333 -~~e~~~~~~~~l~~~ 347 (360)
+++++++++++|+++
T Consensus 333 ~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 333 HTKEDIDRLLEALKEV 348 (349)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 999999999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-25 Score=208.01 Aligned_cols=280 Identities=14% Similarity=0.108 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC-
Q 018172 39 PELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG- 116 (360)
Q Consensus 39 ~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~- 116 (360)
+++|+++++++... + .+++|++|+| ++++..++..++++||+ |++++|+|+.+...++..|.+++.++.
T Consensus 86 ~~l~~~l~~~la~~~g----~~~~i~~tsG-~~a~~~~~~~l~~~gd~----vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (397)
T PRK06939 86 QDLHKELEEKLAKFLG----TEDAILYSSC-FDANGGLFETLLGKEDA----IISDALNHASIIDGVRLCKAKRYRYANN 156 (397)
T ss_pred cHHHHHHHHHHHHHhC----CCcEEEEcCh-HHHHHHHHHHhCCCCCE----EEEEhhhhHHHHHHHHhcCCceEEeCCC
Confidence 56555555543322 2 2357888888 77888899999999998 999999999999999999999888763
Q ss_pred Ccccccc--------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC-------cCCC-CCCcc
Q 018172 117 DANTFDK--------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT-------PITG-AADHD 179 (360)
Q Consensus 117 ~~~~~~~--------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~-------~~~~-~~~~~ 179 (360)
|.+.+.. ..++++|++.+.+||||...+ +.+.++|+++++++|+||+|..+... ...+ ..+.+
T Consensus 157 d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~ 236 (397)
T PRK06939 157 DMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVD 236 (397)
T ss_pred CHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCc
Confidence 3332221 126788888888999998766 67888899899999999999632111 1112 22467
Q ss_pred EEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc--cccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH
Q 018172 180 IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG--SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNM 257 (360)
Q Consensus 180 i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (360)
++++|+||.++ |+|+||+++ ++++++.+....... +.+.++..+.++.++++.+. ..++.++++++++++
T Consensus 237 i~~~S~sK~~~--g~r~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~ 308 (397)
T PRK06939 237 IITGTLGKALG--GASGGYTAG-RKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLE-----ESDELRDRLWENARY 308 (397)
T ss_pred EEEEECHHHhC--ccCceEEEe-CHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHH
Confidence 99999999985 458999998 788999887653221 12223344555555555332 125778899999999
Q ss_pred HHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCCCCCC---CCCeEEEEec
Q 018172 258 LRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGGRRFGA---DAKYARVSML 331 (360)
Q Consensus 258 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~~f~~---~~~~~R~s~~ 331 (360)
+.+.|++++ +....+.+. |+++.++. ...+.+.|.++||.+.++. |+. ..+++|++++
T Consensus 309 l~~~L~~~~-~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~L~~~gI~v~~~~-~~~~~~~~~~iRi~~~ 372 (397)
T PRK06939 309 FREGMTAAG-FTLGPGEHP--------------IIPVMLGDAKLAQEFADRLLEEGVYVIGFS-FPVVPKGQARIRTQMS 372 (397)
T ss_pred HHHHHHHcC-CCcCCCCCC--------------EEEEEECCHHHHHHHHHHHHHCCceEeeeC-CCCCCCCCceEEEEEC
Confidence 999998874 333323222 33333332 2556677777799998654 432 2468999885
Q ss_pred C--ChHHHHHHHHHHHHHHhch
Q 018172 332 S--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 332 ~--~~e~~~~~~~~l~~~~~~~ 351 (360)
. +++++++++++|++++++.
T Consensus 373 ~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 373 AAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 4 8999999999999988653
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-25 Score=203.95 Aligned_cols=250 Identities=14% Similarity=0.141 Sum_probs=178.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCC----CcHHHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS----QYPAETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~----~~~~~~~~~g~~~~~ 113 (360)
..+||++++++++. . ..+++++| ++++..++..++++||+ |+++.|.|. .+...++..|++++.
T Consensus 47 ~~~L~~~lA~l~g~------~-~~v~~~sG-~~ai~~~l~al~~~Gd~----Vl~~~~~~~~ty~~~~~~~~~~G~~v~~ 114 (376)
T PRK06460 47 VLELTKKIVELENA------E-MGVAFSSG-MGAISTTALALLKPGNS----VLVHRDMFGRSYRFFTDYLKNWGVNVDA 114 (376)
T ss_pred HHHHHHHHHHHhCC------C-cEEEeCCH-HHHHHHHHHHHhCCCCE----EEEecCCcCcHHHHHHHHHHhhCcEEEE
Confidence 49999999999985 3 35666555 68999999999999998 999987664 344667788999998
Q ss_pred ecCCcccccc---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGDANTFDK---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~~~~~~~---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+.+.... ++++++|++++||||||.+++ +++.++|+++|+++|+|++|..+. .......+.++++.|+||.+
T Consensus 115 ~~~~~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~-~~~~l~~~~divv~S~sK~l 193 (376)
T PRK06460 115 SNPGSDNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPI-NQKPLELGADIVVHSASKFL 193 (376)
T ss_pred ECCCCHHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccc-cCChhhcCCCEEEeecceec
Confidence 8766433221 467899999999999999998 677888888999999999998542 11112345789999999988
Q ss_pred C-CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 G-HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~-~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+ ..+.++||+++ ++++++.+.+.+...+.+.++... ..++. . .++++...+++.++++.+.+.|++++.+
T Consensus 194 ~G~~~~~~G~~~~-~~~l~~~l~~~~~~~g~~~~~~~a---~~~l~---~--~~~l~~r~~~~~~n~~~l~~~L~~~p~v 264 (376)
T PRK06460 194 AGHNDVIAGLAAG-YGKLLNVIDQMRRTLGTSLDPHAA---YLTLR---G--IKTLKIRMDVINRNAEQIAEFLEGHPKV 264 (376)
T ss_pred cCCCCceEEEEec-CHHHHHHHHHHHHhcCCCCCHHHH---HHHHh---c--hhhHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 6 22468999998 899999998877665555555332 22333 2 1677788889999999999999998766
Q ss_pred ccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhh
Q 018172 269 GLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAE 309 (360)
Q Consensus 269 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 309 (360)
..+.+++-. +........+.+..+.+.++++ +.+.+.++.-
T Consensus 265 ~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l 310 (376)
T PRK06460 265 VKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSL 310 (376)
T ss_pred cEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhC
Confidence 544333211 1111111234556778888654 4444444443
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-25 Score=203.77 Aligned_cols=271 Identities=13% Similarity=0.062 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHH---HHHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPA---ETDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~---~~~~~g~~~~~~ 114 (360)
.+||++++++++. + .+++++++++++..++..+.+ +||+ |++++|+|..... .+...|.+++.+
T Consensus 43 ~~l~~~la~~~~~-------~-~~~~~~~Gs~a~~~~l~~~~~~~gd~----Vl~~~~~~~~~~~~~~~~~~~g~~~~~v 110 (353)
T PLN02721 43 LRLEEEMAKIFGK-------E-AALFVPSGTMGNLISVLVHCDVRGSE----VILGDNSHIHLYENGGISTLGGVHPRTV 110 (353)
T ss_pred HHHHHHHHHHhCC-------c-eeEEecCccHHHHHHHHHHccCCCCe----EEEcCccceehhcccchhhhcCceeEec
Confidence 8999999999985 2 245555556666677777776 8998 9999999865554 567789999988
Q ss_pred cCCccc-cc-----c--C-------CCeeEEEEcC-CCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC-----C
Q 018172 115 DGDANT-FD-----K--N-------NGAYIEVVNS-PNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ-----Y 169 (360)
Q Consensus 115 ~~~~~~-~~-----~--~-------~~~~~i~~~~-p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~-----~ 169 (360)
+.+.++ ++ . + +++++|++++ +|||||..++ +.+.++|+++|+++|+|++|.... .
T Consensus 111 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~ 190 (353)
T PLN02721 111 KNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGV 190 (353)
T ss_pred CCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCC
Confidence 765332 21 1 2 5789999866 5789999987 366778988999999999986432 1
Q ss_pred CcCCCCCCccEEEeccccccCCCCceEEE-EeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHH
Q 018172 170 TPITGAADHDIMLFTLSKCTGHAGSRIGW-ALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGR 248 (360)
Q Consensus 170 ~~~~~~~~~~i~~~S~sK~~~~~G~r~G~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (360)
.......+.+.++.|+||.++.+ +|| ++. ++++++.+...+.....+.+...+.++.... .+ +.+.++.+
T Consensus 191 ~~~~~~~~~d~~~~s~sK~l~~~---~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l----~~~~~~~~ 261 (353)
T PLN02721 191 PVHRLVKAADSVSVCLSKGLGAP---VGSVIVG-SKSFIRKAKRLRKTLGGGMRQVGVLAAAALV-AL----QENVPKLE 261 (353)
T ss_pred CHHHHhhhCCEEEEecccccCCc---eeeEEec-CHHHHHhHHHHHHhcCCCeehhHHHHHHHHH-HH----HHHHHHHH
Confidence 11101224556777899998743 566 555 8899988877665433333333333322211 11 14444444
Q ss_pred HHHHHHHHHHHHHHHhcCCccc-CCCCCcccccccccCCCCCCcccccCCc-----hHHHHHHHHhhCeeeeCCCCCCCC
Q 018172 249 RLMSERWNMLRQVIRQSGVFGL-PEYPLEYCNFTGKFTNSHPGFAWLESKE-----DEDCEKLLRAERIMARGGRRFGAD 322 (360)
Q Consensus 249 ~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gI~~~pg~~f~~~ 322 (360)
+. .++++.+.+.|++++++.. ..+ +.++|+|++++. ...+.+.|.++||.++|+.
T Consensus 262 ~~-~~~~~~l~~~L~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~----- 322 (353)
T PLN02721 262 DD-HKKAKLLAEGLNQIKGLRVNVAA-------------VETNIVYFDITDGSRITAEKLCKSLEEHGVLLMPGN----- 322 (353)
T ss_pred HH-HHHHHHHHHHHHhCCCcEEecCC-------------ccceEEEEEccCCccccHHHHHHHHHhCCcEEecCC-----
Confidence 43 5667899999998865532 222 223467777753 2677888889999999973
Q ss_pred CCeEEEEecC--ChHHHHHHHHHHHHHHh
Q 018172 323 AKYARVSMLS--REEIFNIFLERLSAIQG 349 (360)
Q Consensus 323 ~~~~R~s~~~--~~e~~~~~~~~l~~~~~ 349 (360)
.+++|++++. +++++++++++|++++.
T Consensus 323 ~~~lR~~~~~~~~~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 323 SSRIRVVTHHQISDSDVQYTLSCFQQAAL 351 (353)
T ss_pred CceEEEEecCcCCHHHHHHHHHHHHHHhh
Confidence 5689999853 99999999999998765
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=203.44 Aligned_cols=287 Identities=14% Similarity=0.083 Sum_probs=202.2
Q ss_pred cccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHH
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETD 105 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~ 105 (360)
.|....|. .++++++++++...-. .++++++++| ++++..++..++++||. |+++.|+|..+...+.
T Consensus 69 ~~~~~~g~-----~~l~~~l~~~l~~~~g---~~~~i~~~sG-~~a~~~a~~~~~~~gd~----vi~~~~~~~~~~~~~~ 135 (385)
T TIGR01825 69 AVRTIAGT-----LRLHEELEEKLAKFKK---TEAALVFQSG-FNTNQGVLSALLRKGDI----VLSDELNHASIIDGLR 135 (385)
T ss_pred ccCcccCC-----cHHHHHHHHHHHHHhC---CCcEEEECcH-HHHHHHHHHHhCCCCCE----EEEEccccHHHHHHHH
Confidence 45566676 7778777776543211 2346888888 55666788888999998 9999999999988888
Q ss_pred HhCCeeeeec-CCcccccc------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC-------
Q 018172 106 YLRSGLYKWD-GDANTFDK------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT------- 170 (360)
Q Consensus 106 ~~g~~~~~~~-~~~~~~~~------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~------- 170 (360)
..|.+++.++ +|.+.++. ++++++|++++++||||.+.+ +.+.++|+++|+++|+|++|..+.+.
T Consensus 136 ~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~ 215 (385)
T TIGR01825 136 LTKATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTV 215 (385)
T ss_pred hcCCceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccH
Confidence 8888887664 44433322 246889999999999999888 77888899999999999999753221
Q ss_pred -cCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHh-hc-cccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 171 -PITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIE-LG-SIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 171 -~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
...-..++++++.||||.++++| ||+++ ++++++.+..... .. +...+++.+.++.++++.+.+. .+.
T Consensus 216 ~~~~~~~~~~i~~~s~sK~~~~~g---G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-----~~~ 286 (385)
T TIGR01825 216 HHFGLEDKVDIQVGTLSKAIGVVG---GYAAG-HKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRS-----PEL 286 (385)
T ss_pred hhcCCCcCCcEEEEeccHHhhcCC---CEEec-CHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcC-----HHH
Confidence 01113577999999999998776 99988 8889888876542 21 2234567777777777643221 245
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCCCCCC---
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGGRRFGA--- 321 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~~f~~--- 321 (360)
.+++.++++++.+.|+++ ++.+..+.+ .++++.++. ...+.+.|.++||.+++ ..|+.
T Consensus 287 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~~gi~v~~-~~~~~~~~ 350 (385)
T TIGR01825 287 MERLWDNTRFFKAGLGKL-GYDTGGSET--------------PITPVVIGDEKAAQEFSRRLFDEGIFAQS-IVFPTVPR 350 (385)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCCCCCCC--------------CEEEEEECCHHHHHHHHHHHHHCCcEEcc-cCCCCCCC
Confidence 666778899999999887 344433322 133333332 25566666677999854 33432
Q ss_pred CCCeEEEEec--CChHHHHHHHHHHHHHHhc
Q 018172 322 DAKYARVSML--SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 322 ~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~ 350 (360)
..+++|+++. .++|++++++++|+++++.
T Consensus 351 ~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 351 GTARIRNIPTAEHTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred CCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 3468999874 4999999999999998853
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=203.52 Aligned_cols=274 Identities=18% Similarity=0.158 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC-
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD- 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~- 117 (360)
.++++.++++++ .++.+++++| ++++..++..++++||. |++++|+|+.+...++..|.+++.++..
T Consensus 87 ~~l~~~la~~~~-------~~~~i~~~~g-~~~~~~~l~~~~~~gd~----V~~~~~~~~~~~~~~~~~g~~~~~~~~~d 154 (385)
T PRK05958 87 EALEEELAEWFG-------AERALLFSSG-YAANLAVLTALAGKGDL----IVSDKLNHASLIDGARLSRARVRRYPHND 154 (385)
T ss_pred HHHHHHHHHHhC-------CCcEEEECcH-HHHHHHHHHHhCCCCCE----EEEeCccCHHHHHHHHhcCCceEEeCCCC
Confidence 677777888776 2445555554 56666677888999998 9999999999999999999998888643
Q ss_pred cccccc---C--CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC-------c--CCCCCCccEEE
Q 018172 118 ANTFDK---N--NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT-------P--ITGAADHDIML 182 (360)
Q Consensus 118 ~~~~~~---~--~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~-------~--~~~~~~~~i~~ 182 (360)
.+.++. + +++.++++.+++||||...+ +.+.++|+++|+++|+|++|..+.+. . ......+++++
T Consensus 155 ~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~ 234 (385)
T PRK05958 155 VDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILV 234 (385)
T ss_pred HHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEE
Confidence 333322 1 23566777788999998877 77888899999999999999743221 0 01234577999
Q ss_pred eccccccCCCCceEEEEeecCHHHHHHHHHHHh-hc-cccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHH
Q 018172 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFIE-LG-SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQ 260 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (360)
.|+||.++++| ||+++ ++++.+.+.+... .. +.+.++..+.++.++++.+.. . ++.++.+.++++++.+
T Consensus 235 ~s~sK~~~~~G---g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~----~-~~~~~~~~~~~~~l~~ 305 (385)
T PRK05958 235 GTLGKALGSSG---AAVLG-SETLIDYLINRARPFIFTTALPPAQAAAARAALRILRR----E-PERRERLAALIARLRA 305 (385)
T ss_pred EechhhcccCC---cEEEc-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhc----C-HHHHHHHHHHHHHHHH
Confidence 99999999777 89988 7888888754432 11 223445554455566664322 1 5678889999999999
Q ss_pred HHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEecC--C
Q 018172 261 VIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGA--DAKYARVSMLS--R 333 (360)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~~--~ 333 (360)
.|+..+ +.+..+ .++|+++.+++. ..+.+.|.++||.+.++..+.. +.+++|+++.. +
T Consensus 306 ~L~~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~ 370 (385)
T PRK05958 306 GLRALG-FQLMDS--------------QSAIQPLIVGDNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHT 370 (385)
T ss_pred HHHHcC-CCcCCC--------------CCCEEEEEeCCHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCC
Confidence 999874 333322 233667777642 5677778889999998654432 34699999963 8
Q ss_pred hHHHHHHHHHHHHHH
Q 018172 334 EEIFNIFLERLSAIQ 348 (360)
Q Consensus 334 ~e~~~~~~~~l~~~~ 348 (360)
++++++++++|.+++
T Consensus 371 ~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 371 EADIDRLLEALAEAL 385 (385)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998764
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=200.24 Aligned_cols=283 Identities=19% Similarity=0.211 Sum_probs=197.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH----HHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET----DYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~~~~ 113 (360)
..+|+++++++++ + +.+++ +++++++..++.+++++||+ |+++.|+|..+...+ ...|++++.
T Consensus 53 ~~~Le~~lA~l~~-------~-~~v~~-~sG~~Ai~~~l~all~~Gd~----Vl~~~~~y~~~~~~~~~~l~~~G~~v~~ 119 (366)
T PRK07582 53 WRALEAALGELEG-------A-EALVF-PSGMAAITAVLRALLRPGDT----VVVPADGYYQVRALAREYLAPLGVTVRE 119 (366)
T ss_pred HHHHHHHHHHHcC-------C-CEEEE-CCHHHHHHHHHHHhcCCCCE----EEEeCCCcHhHHHHHHHHHhcCeEEEEE
Confidence 4999999999883 3 34555 55568999999999999998 999999999887755 346999999
Q ss_pred ecCCccccccCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCC-CCCcCCCCCCccEEEecccccc-C
Q 018172 114 WDGDANTFDKNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWP-QYTPITGAADHDIMLFTLSKCT-G 190 (360)
Q Consensus 114 ~~~~~~~~~~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~-~~~~~~~~~~~~i~~~S~sK~~-~ 190 (360)
++.+.+.-...+++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+ ...++ ..+.+++++|+||.+ |
T Consensus 120 v~~~~~~~~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~--~~g~Divv~S~sK~l~G 197 (366)
T PRK07582 120 APTAGMAEAALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPL--ELGADLVVASDTKALTG 197 (366)
T ss_pred ECCCChHHHhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCch--hcCCcEEEecccccccC
Confidence 9876432123467899999999999998877 77788888899999999998632 12222 245679999999988 4
Q ss_pred CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 018172 191 HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGL 270 (360)
Q Consensus 191 ~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 270 (360)
.+|+|+||++++++++.+.+...+...+.+.+++....+...++ .++...++.+++...+.+.|.+++.+..
T Consensus 198 ~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~--------tl~~R~~~~~~na~~la~~L~~~p~v~~ 269 (366)
T PRK07582 198 HSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLG--------TLGLRFARQCANALAVAELLAGHPAVRG 269 (366)
T ss_pred CCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccc--------cHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 57899999998668898988887776666777777666655444 1333335556788888999999887665
Q ss_pred CCCCCcc----cccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCC---------------CCCCeEEEEec
Q 018172 271 PEYPLEY----CNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFG---------------ADAKYARVSML 331 (360)
Q Consensus 271 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~---------------~~~~~~R~s~~ 331 (360)
+.+++.. +........+.+..+.+.+++.+.+.+.+.+.++... +..+| ..++.+|+|+.
T Consensus 270 v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~~~~~~~~~~~l~~~~~-~~s~G~~~sl~~~~~~~~~~~~~~liR~svG 348 (366)
T PRK07582 270 VRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAERFVAASRLVVA-ATSFGGVHTSADRRARWGDAVPEGFVRLSCG 348 (366)
T ss_pred EECCCCCCCccHHHHHhhCCCCcceEEEEeCCHHHHHHHHHhCCccee-cccCCCccchhhhHHHcCCCCCCCeEEEEec
Confidence 4443311 0011111123455677788765777777777776543 22222 23468999996
Q ss_pred C--ChHHHHHHHHHH
Q 018172 332 S--REEIFNIFLERL 344 (360)
Q Consensus 332 ~--~~e~~~~~~~~l 344 (360)
. .++.++.+.++|
T Consensus 349 lE~~~dli~dl~~al 363 (366)
T PRK07582 349 IEDTDDLVADLERAL 363 (366)
T ss_pred cCCHHHHHHHHHHHH
Confidence 6 233344444443
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=203.75 Aligned_cols=277 Identities=14% Similarity=0.097 Sum_probs=200.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC-
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG- 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~- 116 (360)
..+|+++++++++. + .+++++|+++++..++.++..+|++ |+++.+.|.++...++..|.+++.++.
T Consensus 101 ~~~le~~la~~~g~-------~-~~~~~~sG~~An~~~l~~l~~~g~~----v~~~~~~h~s~~~~~~~~g~~~~~~~~~ 168 (407)
T PRK07179 101 KPQFEKKLAAFTGF-------E-SCLLCQSGWAANVGLLQTIADPNTP----VYIDFFAHMSLWEGVRAAGAQAHPFRHN 168 (407)
T ss_pred HHHHHHHHHHHhCC-------C-cEEEECCHHHHHHHHHHHhCCCCCE----EEEECCcCHHHHHHHHHCCCeEEEecCC
Confidence 38999999999984 3 5678999999999999999999988 999999999998888888998887753
Q ss_pred Ccccccc---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC----cCC---CC-CCccEEEec
Q 018172 117 DANTFDK---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT----PIT---GA-ADHDIMLFT 184 (360)
Q Consensus 117 ~~~~~~~---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~----~~~---~~-~~~~i~~~S 184 (360)
|.+.+.. +.++++|++++|+||||.+++ +++.++|+++|+++|+||+|..+... ... +. ...++++.|
T Consensus 169 d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S 248 (407)
T PRK07179 169 DVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITAS 248 (407)
T ss_pred CHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEee
Confidence 4444433 224788999999999999998 67888899999999999999853211 111 11 223689999
Q ss_pred cccccCCCCceEEEEeecCHHHHHHHHHHHhh--ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 018172 185 LSKCTGHAGSRIGWALVKDTEVARKMTRFIEL--GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVI 262 (360)
Q Consensus 185 ~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (360)
+||++|. |+||+++ ++++++.+...... .+.+.++....++.++++.+ ....+.+++++++++++.+.|
T Consensus 249 ~sK~~g~---~~G~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~-----~~~~~~~~~l~~~~~~l~~~L 319 (407)
T PRK07179 249 LAKAFAG---RAGIITC-PRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVI-----ESADDRRARLHANARFLREGL 319 (407)
T ss_pred chHhhhc---cCeEEEe-CHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHH
Confidence 9999872 6899998 78888877654432 12223333333344455533 223457788999999999999
Q ss_pred HhcCCcccCCCCCcccccccccCCCCCCcccccCCc--h-HHHHHHHHhhCeeeeCCCCCC--CCCCeEEEEecC--ChH
Q 018172 263 RQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--D-EDCEKLLRAERIMARGGRRFG--ADAKYARVSMLS--REE 335 (360)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~l~~~gI~~~pg~~f~--~~~~~~R~s~~~--~~e 335 (360)
+++ ++.+. +.++++++.+++ . ..+.+.|.++||.+......+ ...+++||++.. ++|
T Consensus 320 ~~~-g~~v~---------------~~~~i~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~e 383 (407)
T PRK07179 320 SEL-GYNIR---------------SESQIIALETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTAS 383 (407)
T ss_pred HHc-CCCCC---------------CCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHH
Confidence 987 33332 122366666654 2 667788889999743211011 125799999975 999
Q ss_pred HHHHHHHHHHHHHhch
Q 018172 336 IFNIFLERLSAIQGGS 351 (360)
Q Consensus 336 ~~~~~~~~l~~~~~~~ 351 (360)
++++++++|++++.+.
T Consensus 384 di~~~~~~l~~~~~~~ 399 (407)
T PRK07179 384 DLDRVLEVCREARDEV 399 (407)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=204.50 Aligned_cols=285 Identities=15% Similarity=0.094 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH----HHHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA----ETDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~----~~~~~g~~~~~~ 114 (360)
.++|+.++++++. .+.++|++|+|++++++.++.+++++||+ |+++.++|..+.. +++..|.+++.+
T Consensus 47 ~~~~~~la~~~~~-----~~~~~v~~~~g~t~al~~~~~~~~~~gd~----vl~~~~~~~~~~~~~~~~~~~~g~~~~~v 117 (376)
T TIGR01977 47 EETRQLLAKLFNA-----PSSAHVVFTNNATTALNIALKGLLKEGDH----VITTPMEHNSVARPLECLKEQIGVEITIV 117 (376)
T ss_pred HHHHHHHHHHhCc-----CCCCeEEEeCCHHHHHHHHHHhccCCCCE----EEECcchhhHHHHHHHHHHHHcCcEEEEE
Confidence 8999999999985 13348999999999999999999999998 9999999988654 445569999988
Q ss_pred cCCccc-ccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecc
Q 018172 115 DGDANT-FDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTL 185 (360)
Q Consensus 115 ~~~~~~-~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~ 185 (360)
+.+.++ ++. +++++++++++|+||||..++ +++.++|+++|+++|+|++++.+..+......+.++++.|+
T Consensus 118 ~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~ 197 (376)
T TIGR01977 118 KCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTG 197 (376)
T ss_pred ecCCCCCcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecc
Confidence 765432 111 467899999999999999999 67788898899999999999876554444556789999999
Q ss_pred ccccCC-CCceEEEEeecCHHHHHHHHHH----------------HhhccccCChHHHHHHHHHhcccCCCchhHHHHHH
Q 018172 186 SKCTGH-AGSRIGWALVKDTEVARKMTRF----------------IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGR 248 (360)
Q Consensus 186 sK~~~~-~G~r~G~~~~~~~~~~~~l~~~----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (360)
+|.++. +| .|.++..+...++.+... ..+...+.+.....++.++++.+.. ..+++++
T Consensus 198 ~K~l~~p~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~---~g~~~~~ 272 (376)
T TIGR01977 198 HKGLLGPQG--TGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEK---IGIANIA 272 (376)
T ss_pred cccccCCCC--ceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHH---hCHHHHH
Confidence 997753 34 566655343321211110 0011224455556666666665432 4467788
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhh-CeeeeCCCCCC-----
Q 018172 249 RLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAE-RIMARGGRRFG----- 320 (360)
Q Consensus 249 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~-gI~~~pg~~f~----- 320 (360)
++.+++.+++.+.|.+.+++.+..+... ......+++.+++ .+.+.+.|.++ ||.+.+|..+.
T Consensus 273 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~ 343 (376)
T TIGR01977 273 KKECMLTEKLLNGLREINKVKIYGPADP---------ANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHK 343 (376)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEeCCCCc---------cccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHH
Confidence 8889999999999998876665443210 0112245555553 26788888777 99999987553
Q ss_pred ---C-CCCeEEEEecC--ChHHHHHHHHHHHH
Q 018172 321 ---A-DAKYARVSMLS--REEIFNIFLERLSA 346 (360)
Q Consensus 321 ---~-~~~~~R~s~~~--~~e~~~~~~~~l~~ 346 (360)
. ..+.+|+++.. +++++++++++|++
T Consensus 344 ~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 344 TIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred HhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 1 35789999866 99999999999976
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=203.64 Aligned_cols=214 Identities=14% Similarity=0.109 Sum_probs=166.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH-----HHhCCeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET-----DYLRSGLY 112 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~-----~~~g~~~~ 112 (360)
..+|++.+++++|. + .+++++|+++++..++..++++||+ |+++.|.|+.+...+ +..|.+++
T Consensus 78 ~~~LE~~lA~l~g~-------~-~~l~~~sG~~Ai~~al~al~~~GD~----Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~ 145 (418)
T PLN02242 78 VLNLGRQMAALEGT-------E-AAYCTASGMSAISSVLLQLCSSGGH----VVASNTLYGGTHALLAHFLPRKCNITTT 145 (418)
T ss_pred HHHHHHHHHHHhCC-------C-eEEEEccHHHHHHHHHHHHhCCCCE----EEEcCCcHHHHHHHHHHhhhhccCceEE
Confidence 48999999999985 3 5778999999999999999999998 999999999887765 34688887
Q ss_pred eecCC-cccccc--CC-CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccc
Q 018172 113 KWDGD-ANTFDK--NN-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSK 187 (360)
Q Consensus 113 ~~~~~-~~~~~~--~~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK 187 (360)
.++.+ .+.+.. ++ ++++|++++|+||||.+++ +.+.++|+++++++|+|++|....+.+ ...+.+++++|+||
T Consensus 146 ~~d~~d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~~~--~~~g~divv~S~SK 223 (418)
T PLN02242 146 FVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVLSP--ARLGADVVVHSISK 223 (418)
T ss_pred EcCCCCHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCCCH--HHcCCcEEEEeCcc
Confidence 77653 444433 44 5899999999999999988 677888888999999999997433322 23357899999999
Q ss_pred ccCCCCce-EEEEeecCHHHHHHHHHHHhh--ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 018172 188 CTGHAGSR-IGWALVKDTEVARKMTRFIEL--GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQ 264 (360)
Q Consensus 188 ~~~~~G~r-~G~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (360)
.++.+|++ .||+++ ++++++.+.+.+.. ...+.+...|.++..+.. + ..+....++++++++++.+.|++
T Consensus 224 ~l~g~g~~~gG~iv~-~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~-l-----~tl~~r~~~~~~~a~~la~~L~~ 296 (418)
T PLN02242 224 FISGGADIIAGAVCG-PAELVNSMMDLHHGALMLLGPTMNPKVAFELSER-L-----PHLSLRMKEHCRRAMEYAKRMKE 296 (418)
T ss_pred ccCCCCCceEEEEEc-CHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcC-C-----CcHHHHHHHHHHHHHHHHHHHHh
Confidence 99888988 588887 88899988876542 234555566666655443 1 34555667889999999999999
Q ss_pred cCCcccCCC
Q 018172 265 SGVFGLPEY 273 (360)
Q Consensus 265 ~~~~~~~~~ 273 (360)
++ ..+..|
T Consensus 297 ~~-~~V~yP 304 (418)
T PLN02242 297 LG-LKVIYP 304 (418)
T ss_pred CC-CEEECC
Confidence 95 444433
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=199.54 Aligned_cols=274 Identities=13% Similarity=0.111 Sum_probs=185.0
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC-cHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ-YPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~-~~~ 102 (360)
...|++..+. .+|++++++++|. + .+++++|+++++.+.+..++++||+ |+++.|+|.. +..
T Consensus 27 ~~~Y~~~~~~-----~~L~~~la~~~g~------~--~~~v~~~g~~a~~~~l~~~~~~gd~----vi~~~~~~~~~~~~ 89 (333)
T PRK10534 27 DDVYGDDPTV-----NALQDYAAELSGK------E--AALFLPTGTQANLVALLSHCERGEE----YIVGQAAHNYLYEA 89 (333)
T ss_pred CcccCCCHHH-----HHHHHHHHHHhCC------C--eEEEeCchHHHHHHHHHHhcCCCCe----eEEechhhhhHhcC
Confidence 3457544444 9999999999995 3 4567777888888888888999998 9999888864 332
Q ss_pred H-HHHhC-CeeeeecCCc------ccccc--CC------CeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEee
Q 018172 103 E-TDYLR-SGLYKWDGDA------NTFDK--NN------GAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDL 162 (360)
Q Consensus 103 ~-~~~~g-~~~~~~~~~~------~~~~~--~~------~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ 162 (360)
. +...| .+++.++.+. +.+.. .+ ++++|+++||+ ||.+++. .+.++|+++++++++||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDE 167 (333)
T PRK10534 90 GGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDG 167 (333)
T ss_pred CchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeH
Confidence 1 34444 6777665442 22211 22 58899999765 5999883 23457787899999999
Q ss_pred cccCCCC----CcCCC-CCCccEEEeccccccCCCCceEE-EEeecCHHHHHHHHHHHhhcccc--CChHHHHHHHHHhc
Q 018172 163 AYYWPQY----TPITG-AADHDIMLFTLSKCTGHAGSRIG-WALVKDTEVARKMTRFIELGSIG--VSKESQLRAAKILG 234 (360)
Q Consensus 163 ay~~~~~----~~~~~-~~~~~i~~~S~sK~~~~~G~r~G-~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~l~ 234 (360)
+|.+... ..... ......++.||||.|+++ +| |+++ ++++++.+.+.+..+..+ .+.+.|.++.+.++
T Consensus 168 A~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~---~G~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~ 243 (333)
T PRK10534 168 ARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTP---VGSLLVG-NRDYIKRARRWRKMTGGGMRQAGILAAAGLYALK 243 (333)
T ss_pred HHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCc---ccceEEc-CHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 9874211 11111 011123345899998865 67 6777 899999998877654333 23355555555553
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCee
Q 018172 235 IVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIM 312 (360)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~ 312 (360)
...+.++ ..+++|+++.+.|++++ +.+.. +.++|+|+++++ ...+.+.|+++||.
T Consensus 244 -------~~~~~~~-~~~~~r~~l~~~L~~~g-~~~~~--------------~~~nfv~~~~~~~~~~~~~~~l~~~gi~ 300 (333)
T PRK10534 244 -------HNVARLQ-EDHDNAAWLAEQLREAG-ADVMR--------------QDTNMLFVRVGEEQAAALGEYMRERNVL 300 (333)
T ss_pred -------hhHHHHH-HHHHHHHHHHHHHHhCC-CccCC--------------CCceEEEEECCchhHHHHHHHHHHcCee
Confidence 2222223 34456789999999884 44332 345588998864 36778999999999
Q ss_pred eeCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhc
Q 018172 313 ARGGRRFGADAKYARVSML--SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 313 ~~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~ 350 (360)
++||. ++|++.. .++|++++++++|++++.+
T Consensus 301 v~~~~-------~~rl~~~~r~t~e~~~~~~~~l~~~~~~ 333 (333)
T PRK10534 301 INASP-------IVRLVTHLDVSREQLAEVVAHWRAFLAR 333 (333)
T ss_pred ecCCc-------eEEEEEEeCCCHHHHHHHHHHHHHHhcC
Confidence 99863 5788764 3899999999999988764
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=199.30 Aligned_cols=241 Identities=14% Similarity=0.111 Sum_probs=180.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~ 113 (360)
..+|+++++++++. + ++++++|+++++..++..++++||+ |+++.|+|+.....+.. .|.++..
T Consensus 54 ~~~L~~~lA~l~g~-------~-~~i~~~sg~~Ai~~~l~~l~~~GD~----Vl~~~~~y~~~~~~~~~~~~~~gi~v~~ 121 (386)
T PRK08045 54 RDVVQRALAELEGG-------A-GAVLTNTGMSAIHLVTTVFLKPGDL----LVAPHDCYGGSYRLFDSLAKRGCYRVLF 121 (386)
T ss_pred HHHHHHHHHHHhCC-------C-eEEEECCHHHHHHHHHHHHcCCCCE----EEEcCCCcHHHHHHHHHHHhhCCeEEEE
Confidence 48999999999883 3 6999999999999999999999998 99999999975554433 3446665
Q ss_pred ecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++. |.+.+.. ++++++|++++||||||.+++ +.+.++|+++|+++|+|++|..+... .+-..+.+++++|++|.+
T Consensus 122 vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~-~pl~~gaDivv~S~tK~l 200 (386)
T PRK08045 122 VDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQ-NPLALGADLVLHSCTKYL 200 (386)
T ss_pred eCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccC-CchhhCCCEEEeecceec
Confidence 542 3333332 467899999999999999998 67778888899999999999865321 122345579999999988
Q ss_pred C-CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 G-HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~-~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+ ..+.+.|++++.++++.+.+...+...+.+.+++.+..+...++ .++...++..++...+.+.|++++.+
T Consensus 201 ~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~--------tl~~R~~~~~~na~~la~~L~~~p~v 272 (386)
T PRK08045 201 NGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR--------TLVPRMELAQRNAQAIVKYLQTQPLV 272 (386)
T ss_pred cCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhc--------cHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 5 56788999988678888888877777788899999988877665 26667777788889999999999876
Q ss_pred ccCCCCCcc----cccccccCCCCCCcccccCCch
Q 018172 269 GLPEYPLEY----CNFTGKFTNSHPGFAWLESKED 299 (360)
Q Consensus 269 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 299 (360)
..+.+++.. +........+.+..+.+.++++
T Consensus 273 ~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~ 307 (386)
T PRK08045 273 KKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD 307 (386)
T ss_pred eEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCc
Confidence 654443321 1111111234455677888654
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=203.40 Aligned_cols=301 Identities=12% Similarity=0.099 Sum_probs=207.1
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|++..|+ ++||++++++++. +++++|+|+++++++++.+++++||. | +++|.|..+...+
T Consensus 47 ~~Y~~~~g~-----~~Leeaia~~~g~--------~~vv~t~~Gt~Al~la~~al~~pGD~----V-~~~~~f~~~~~~i 108 (431)
T cd00617 47 EAYAGSKSF-----YDLEDAVQDLFGF--------KHIIPTHQGRGAENILFSILLKPGRT----V-PSNMHFDTTRGHI 108 (431)
T ss_pred CccCCCCCH-----HHHHHHHHHHHCC--------CeEEEcCCHHHHHHHHHHHhCCCCCE----E-ccCCcccchHHHH
Confidence 359999988 9999999999995 37999999999999999999999996 6 6999999999999
Q ss_pred HHhCCeeeeecCCcc---------c--ccc-------CC----CeeEEEEcCCCCCC-cccch----HHHHHHhhhcCcE
Q 018172 105 DYLRSGLYKWDGDAN---------T--FDK-------NN----GAYIEVVNSPNNPD-GTIRE----AVLAKVNRSAEGK 157 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~---------~--~~~-------~~----~~~~i~~~~p~NPt-G~~~~----~~~~~~~~~~~~~ 157 (360)
...|++++.++++.. . ++. ++ ++++|++++||||+ |.+++ +.+.++|+++|++
T Consensus 109 ~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~ 188 (431)
T cd00617 109 EANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIP 188 (431)
T ss_pred HhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 999999998877532 1 111 22 37899999999998 89887 3557889999999
Q ss_pred EEEeecccCCCCC-------cCC--CCCCccEEEeccccccCCCCce------EEEEeecCHHHHHHHHHHH----hhcc
Q 018172 158 LIHDLAYYWPQYT-------PIT--GAADHDIMLFTLSKCTGHAGSR------IGWALVKDTEVARKMTRFI----ELGS 218 (360)
Q Consensus 158 li~D~ay~~~~~~-------~~~--~~~~~~i~~~S~sK~~~~~G~r------~G~~~~~~~~~~~~l~~~~----~~~~ 218 (360)
+|+|+++...... ... ...+.++.++|++|.+.++|+| .||++++++++++.++... ....
T Consensus 189 li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~ 268 (431)
T cd00617 189 VVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVT 268 (431)
T ss_pred EEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccc
Confidence 9999996532110 010 1112244567888888888887 6799996567999887532 1111
Q ss_pred cc-CChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC
Q 018172 219 IG-VSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297 (360)
Q Consensus 219 ~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
++ .+.....+++..|....+ .+...+++. +++++.+.|.+. ++.+..|.|+++.|.+..... +..-.-.++
T Consensus 269 ~gG~~~r~~~A~A~gL~e~~~-----~~~l~~~~~-~r~~l~~~L~~~-G~~v~~P~Ggh~v~~d~~~~~-~~~~~~~~~ 340 (431)
T cd00617 269 YGGMAGRDMEALAQGLREAVE-----EDYLRHRVE-QVRYLGDRLDEA-GVPIVEPAGGHAVFIDAREFL-PHIPQEQFP 340 (431)
T ss_pred cccccHHHHHHHHHHHHhccc-----HHHHHHHHH-HHHHHHHHHHHC-CCCccCCCcceEEEEEhHHhc-CCCCcccCc
Confidence 22 233333333335542111 233444444 559999999999 567788888885554322110 000000112
Q ss_pred chHHHHHHHHhhCeeeeC-CCC-CC--C--------CCCeEEEEecC---ChHHHHHHHHHHHHHHhch
Q 018172 298 EDEDCEKLLRAERIMARG-GRR-FG--A--------DAKYARVSMLS---REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 298 ~~~~~~~~l~~~gI~~~p-g~~-f~--~--------~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~ 351 (360)
+.+++..++.+.||.+.- |.. ++ . ....+|+.+-. +.+.++...++|.++.++.
T Consensus 341 ~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~ 409 (431)
T cd00617 341 AQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERR 409 (431)
T ss_pred HHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhH
Confidence 337778999999999643 441 11 1 13679999855 8899999999999999764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=199.56 Aligned_cols=296 Identities=14% Similarity=0.129 Sum_probs=201.2
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
+++|+++. ..+|+++++++.+. +++++|+|+++++..++..++++||+ |+++.|+|......
T Consensus 45 Y~R~~~p~------~~~le~~lA~l~g~--------~~v~~~~gg~~Ai~~~l~all~~GD~----Vl~~~p~y~~~~~~ 106 (382)
T TIGR02080 45 YSRSGNPT------RDLLQQALAELEGG--------AGAVVTNTGMSAIHLVTTALLGPDDL----LVAPHDCYGGTYRL 106 (382)
T ss_pred ccCCCCch------HHHHHHHHHHHhCC--------CcEEEEcCHHHHHHHHHHHHcCCCCE----EEEcCCCcHHHHHH
Confidence 45565444 38999999999983 37999999999999999999999998 99999999976654
Q ss_pred HHH----hCCeeeeecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-CcCCC
Q 018172 104 TDY----LRSGLYKWDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-TPITG 174 (360)
Q Consensus 104 ~~~----~g~~~~~~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-~~~~~ 174 (360)
+.. .|.++..++.+ .+.+.. ++++++|++++||||||.+++ +.+.++|+++|+++|+|++|..+.. .++
T Consensus 107 ~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl-- 184 (382)
T TIGR02080 107 LNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPL-- 184 (382)
T ss_pred HHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCch--
Confidence 433 25666655432 333332 467899999999999999998 6777888889999999999985432 222
Q ss_pred CCCccEEEeccccccC-CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHH
Q 018172 175 AADHDIMLFTLSKCTG-HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 175 ~~~~~i~~~S~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
..+.+++++|+||.++ .++++.|++++.++++.+.+...+...+.+.+++.+..+...++ . +....++..+
T Consensus 185 ~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~-------t-l~~R~~~~~~ 256 (382)
T TIGR02080 185 ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLR-------T-LVARMRLQQR 256 (382)
T ss_pred hhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccc-------h-HHHHHHHHHH
Confidence 2345799999999885 57889999888678899999887777677788887766644332 3 3333556668
Q ss_pred HHHHHHHHHHhcCCcccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhhCe---eeeCCC--------
Q 018172 254 RWNMLRQVIRQSGVFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERI---MARGGR-------- 317 (360)
Q Consensus 254 ~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI---~~~pg~-------- 317 (360)
+...+.+.|+.++.+..+.+++.. +........+.+..+.+.++++ +.+.+.+..-.+ .+.-|.
T Consensus 257 na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p 336 (382)
T TIGR02080 257 NAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLSLFTLAESLGGVESLIAHP 336 (382)
T ss_pred HHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHcCCcceEeccCCCCcceeECC
Confidence 888889999998876654444321 1111111234556778888654 333333333232 211111
Q ss_pred --------------CCCCCCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 318 --------------RFGADAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 318 --------------~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
..|..++.+|||++.+ +.+.+++.|.+.+.
T Consensus 337 ~~~~~~~~~~~~~~~~gi~~~liRlsvGlE--~~~dl~~dl~~al~ 380 (382)
T TIGR02080 337 ATMTHAAMGPEARAEAGISDTLLRLSVGLE--DADDLIADLEQGLR 380 (382)
T ss_pred CccCcccCCHHHHHhcCCCcCeEEEEeccC--CHHHHHHHHHHHHh
Confidence 1122356899999662 23445555555554
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-24 Score=200.62 Aligned_cols=273 Identities=12% Similarity=0.114 Sum_probs=187.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~ 113 (360)
..+|+++++++++. + ++++++|+++++..++..++++||+ |+++.|.|..+... ++..|++++.
T Consensus 66 ~~~Le~~iA~~~g~-------~-~~l~~~sG~~Ai~~al~~ll~~Gd~----Vl~~~~~y~~~~~~~~~~~~~~G~~v~~ 133 (400)
T PRK06234 66 STEVENKLALLEGG-------E-AAVVAASGMGAISSSLWSALKAGDH----VVASDTLYGCTFALLNHGLTRYGVEVTF 133 (400)
T ss_pred HHHHHHHHHHHhCC-------C-cEEEEcCHHHHHHHHHHHHhCCCCE----EEEecCccchHHHHHHHHHhhCCeEEEE
Confidence 39999999999984 3 5788888889999999999999998 99999999876654 4668999998
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhc--CcEEEEeecccCCCCCcCCCCCCccEEEecccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSA--EGKLIHDLAYYWPQYTPITGAADHDIMLFTLSK 187 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~--~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK 187 (360)
++.+ .+.+.. ++++++|++++|+||||.+.+ +.+.++|+++ ++++|+|++|..+.... +-..+.+++++|+||
T Consensus 134 vd~~d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~-~l~~g~Divv~S~sK 212 (400)
T PRK06234 134 VDTSNLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQR-PLQLGADVVVHSATK 212 (400)
T ss_pred ECCCCHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCC-chhhCCcEEEeeccc
Confidence 8753 344433 567999999999999999988 6778888875 99999999998543221 123467899999999
Q ss_pred ccCCCCceE-EEEeecCHHHHHHHHHH--HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 018172 188 CTGHAGSRI-GWALVKDTEVARKMTRF--IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQ 264 (360)
Q Consensus 188 ~~~~~G~r~-G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (360)
.++.+|+++ ||+++ ++++++.++.. ....+.+.++.....+...++ .+....++.+++...+.+.|.+
T Consensus 213 ~l~g~g~~~gG~v~~-~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~--------tl~~r~~~~~~na~~~a~~L~~ 283 (400)
T PRK06234 213 YLNGHGDVIAGFVVG-KEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMK--------TLQIRMEKHCKNAMKVAKFLES 283 (400)
T ss_pred cccCCCCceeEEEEe-cHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccC--------cHHHHHHHHHHHHHHHHHHHHc
Confidence 998889875 89888 78888888653 223345555555544444333 2334444455777888888988
Q ss_pred cCCcccCCCCCcc----cccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeCCCCC-----------------
Q 018172 265 SGVFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARGGRRF----------------- 319 (360)
Q Consensus 265 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~pg~~f----------------- 319 (360)
++.+..+.+++.. +.+......+.+.++.+.+++. ..+.+.|+--++...-|...
T Consensus 284 ~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~ 363 (400)
T PRK06234 284 HPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDAETLIQHPASMTHSPYTAE 363 (400)
T ss_pred CCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCCcceEeccCCCCCceecCCccCCCCCCCHH
Confidence 8766544444311 1111111223455677887643 33444554444443333211
Q ss_pred -----CCCCCeEEEEecC
Q 018172 320 -----GADAKYARVSMLS 332 (360)
Q Consensus 320 -----~~~~~~~R~s~~~ 332 (360)
|..++.+|||++.
T Consensus 364 ~~~~~gi~~~l~R~svGl 381 (400)
T PRK06234 364 ERKEAGISDGLVRLSVGL 381 (400)
T ss_pred HHHhcCCCCCeEEEEeCC
Confidence 2235689999977
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=195.55 Aligned_cols=274 Identities=14% Similarity=0.124 Sum_probs=191.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH----HHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA----ETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~----~~~~~g~~~~~ 113 (360)
..+|++++++++|. + . .++++|+++++..++ .++++||+ |+++.|.|+.... .+...|++++.
T Consensus 54 ~~~le~~la~l~g~------~-~-~~~~~sG~~ai~~~~-~ll~~Gd~----Vl~~~~~y~~t~~~~~~~~~~~G~~v~~ 120 (366)
T PRK08247 54 RGVLEQAIADLEGG------D-Q-GFACSSGMAAIQLVM-SLFRSGDE----LIVSSDLYGGTYRLFEEHWKKWNVRFVY 120 (366)
T ss_pred HHHHHHHHHHHhCC------C-c-EEEEcCHHHHHHHHH-HHhCCCCE----EEEecCCcCcHHHHHHHHhhccCceEEE
Confidence 48999999999995 3 2 466777789998766 57789998 9999999998644 44558999998
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. ++++++|++++|+||+|...+ +.+.++|+++|+++|+|++|..+.. ..+...+.+++++|+||.+
T Consensus 121 vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~-~~p~~~g~di~i~S~sK~~ 199 (366)
T PRK08247 121 VNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVL-QRPLEEGADIVIHSATKYL 199 (366)
T ss_pred ECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc-cCchhcCCcEEEeecceec
Confidence 8753 344433 468999999999999998776 6777888889999999999964321 1122356789999999998
Q ss_pred CC-CCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 GH-AGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~~-~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+. .+.+.|+++++++++.+.+...+...+.+.+++.|.++...++ . +....++.+++++.+.+.|++++++
T Consensus 200 ~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~-------t-l~~r~~~~~~~a~~l~~~L~~~p~v 271 (366)
T PRK08247 200 GGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMK-------T-LALRMRQHEENAKAIAAFLNEQPGV 271 (366)
T ss_pred cCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccC-------c-HHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 73 3568999998447888888877776667777887777766444 2 2334445699999999999999776
Q ss_pred cc-CCC-CCcccccccccCCCCCCcccccCCchHHHH---H----------HHHhhCeeeeCCCCC------------CC
Q 018172 269 GL-PEY-PLEYCNFTGKFTNSHPGFAWLESKEDEDCE---K----------LLRAERIMARGGRRF------------GA 321 (360)
Q Consensus 269 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------~l~~~gI~~~pg~~f------------~~ 321 (360)
.. ..| .|++++| .+++.++.. + +...+.+.+.|+..+ |.
T Consensus 272 ~~v~~P~~gg~~sf--------------~~~~~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi 337 (366)
T PRK08247 272 TDVLYPGRGGMLSF--------------RLQDEEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGV 337 (366)
T ss_pred eEEecCCcCcEEEE--------------EECCHHHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCHHHHHhcCC
Confidence 64 233 4555443 333222221 1 112345556676544 22
Q ss_pred CCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 322 DAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 322 ~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
.++.+|||++.+ +.+.+++.|.+.++
T Consensus 338 ~~~~~R~svGlE--~~~dl~~dl~~al~ 363 (366)
T PRK08247 338 CNRLLRFSVGIE--NVEDLIADLKQAFK 363 (366)
T ss_pred CCCeEEEEeccC--CHHHHHHHHHHHHh
Confidence 356899998662 24455555555554
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-24 Score=198.52 Aligned_cols=286 Identities=15% Similarity=0.125 Sum_probs=195.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH----HHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA----ETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~----~~~~~g~~~~~ 113 (360)
..+|++.++++++. + ++++++|+++++..++..++++||+ |+++.+.|.+... .+...|++++.
T Consensus 63 ~~~le~~la~l~g~-------~-~~v~~ssG~~Ai~~al~al~~~Gd~----Vi~~~~~y~~t~~~~~~~~~~~G~~v~~ 130 (390)
T PRK08133 63 VTMFQERLAALEGA-------E-ACVATASGMAAILAVVMALLQAGDH----VVSSRSLFGSTVSLFEKIFARFGIETTF 130 (390)
T ss_pred HHHHHHHHHHHhCC-------C-cEEEECCHHHHHHHHHHHHhCCCCE----EEEccCcchhHHHHHHHHHHHcCcEEEE
Confidence 48999999999984 3 5888999999999999999999998 9999999987665 34567999999
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+.... +...+.+++++|+||.+
T Consensus 131 vd~~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~-pl~~g~Divv~S~sK~~ 209 (390)
T PRK08133 131 VDLTDLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQ-PLKLGADVVIHSATKYL 209 (390)
T ss_pred ECCCCHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCC-chhhCCcEEEeecceee
Confidence 8864 344433 468999999999999999988 677888988999999999987542211 12335689999999999
Q ss_pred CCCCceEE-EEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 GHAGSRIG-WALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~~~G~r~G-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+.+|.++| ++++ ++++++.+.......+...++..+.. ++..+ +.+....++..++...+.+.|++++.+
T Consensus 210 ~g~g~~~GG~vv~-~~~~~~~~~~~~~~~g~~~~~~~a~~---~l~gl-----~tl~~R~~~~~~~a~~la~~L~~~p~v 280 (390)
T PRK08133 210 DGQGRVLGGAVVG-SKELMEEVFGFLRTAGPTLSPFNAWV---FLKGL-----ETLSLRMEAHSANALALAEWLEAHPGV 280 (390)
T ss_pred cCCcceEeEEEEc-CHHHHHHHHHHHHHhCCCCCHHHHHH---HHccc-----chHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 98999985 5555 77777777665554444444444333 34322 344455555667888999999999776
Q ss_pred ccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCC------------------------
Q 018172 269 GLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRF------------------------ 319 (360)
Q Consensus 269 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f------------------------ 319 (360)
..+.+++.. +........+.+..+.+.++++ +.+.+.+.+-.+. ..+..+
T Consensus 281 ~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~-~~~~slG~~~sl~~~p~~~~~~~~~~~~~~ 359 (390)
T PRK08133 281 ERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVIDATRLI-SITANLGDTKTTITHPATTTHGRLSPEARA 359 (390)
T ss_pred eEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHHhCCcc-eEeccCCCcceeeecCCCCCcccCCHHHHH
Confidence 655444421 1111111234456778888644 4444444443443 222111
Q ss_pred --CCCCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 320 --GADAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 320 --~~~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
|..++.+|||++.+ +.+.+++.|++.+
T Consensus 360 ~~gi~~~liR~svGlE--~~~dl~~dl~~al 388 (390)
T PRK08133 360 AAGITEGLIRVAVGLE--DVADIKADLARGL 388 (390)
T ss_pred hcCCCCCeEEEEeCcC--CHHHHHHHHHHHh
Confidence 22356899999663 2345555555554
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=198.01 Aligned_cols=289 Identities=15% Similarity=0.142 Sum_probs=197.5
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~ 113 (360)
..+|++.+++++|. + +.++++++++++..++..++++||+ |+++.|+|...... +...|++++.
T Consensus 66 ~~~le~~lA~l~g~-------~-~~i~~ssG~~Ai~~~l~all~~GD~----Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~ 133 (398)
T PRK08249 66 VQAFEEKVRILEGA-------E-AATAFSTGMAAISNTLYTFLKPGDR----VVSIKDTYGGTNKIFTEFLPRMGVDVTL 133 (398)
T ss_pred HHHHHHHHHHHhCC-------C-eEEEeCChHHHHHHHHHHhcCCCCE----EEEcCCchHHHHHHHHHHHhhCCeEEEE
Confidence 48999999999994 3 4566666689999999999999998 99999999976543 4567888887
Q ss_pred ecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++. |.+.+.. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+.... +...+.+++++|+||.+
T Consensus 134 vd~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~-~l~~~~Divv~S~sK~l 212 (398)
T PRK08249 134 CETGDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQN-PLALGADLVIHSATKFL 212 (398)
T ss_pred cCCCCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCC-chhhCCCEEeccCceec
Confidence 764 3444433 467999999999999999998 677888888999999999998542211 12346678999999999
Q ss_pred CCCCceE-EEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 GHAGSRI-GWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~~~G~r~-G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+.+|.++ |++++ ++++++.+...+...+.+.++..+..+...++ .+....++..++.+.+.+.|++++.+
T Consensus 213 ~g~~~~~gG~vv~-~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~--------tL~~R~~~~~~na~~la~~L~~~p~v 283 (398)
T PRK08249 213 SGHADALGGVVCG-SKELMEQVYHYREINGATMDPMSAYLILRGMK--------TLKLRVRQQQESAMALAKYLQTHPKV 283 (398)
T ss_pred CCCCCceEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcc--------hHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 8677776 55665 88999999887776666677776666655433 33445566678888899999998876
Q ss_pred ccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCC------------------------
Q 018172 269 GLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRF------------------------ 319 (360)
Q Consensus 269 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f------------------------ 319 (360)
..+.++|-. +........+.+..+.+.++++ +.+.+.+.+-.+. ..+..+
T Consensus 284 ~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l~l~-~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~ 362 (398)
T PRK08249 284 EAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLRYA-HRAANLGAVETIYGPARTTSHVENTLEERA 362 (398)
T ss_pred eEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhCCcc-eEccCCCCCCceeeCCcccccccCCHHHHH
Confidence 655444321 1111111224455677777644 4444444443433 112111
Q ss_pred --CCCCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 320 --GADAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 320 --~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
|..++.+|||++.+ +.+.+++.|.+.++..
T Consensus 363 ~~gi~~~liR~svGlE--~~~dl~~dl~~al~~~ 394 (398)
T PRK08249 363 ALGIPEGLVRISVGIE--DTEDLIADLEQAFAHL 394 (398)
T ss_pred hcCCCCCeEEEEeccC--CHHHHHHHHHHHHHHh
Confidence 22356799999662 2344555555555443
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=196.89 Aligned_cols=252 Identities=15% Similarity=0.179 Sum_probs=181.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc----HHHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY----PAETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~----~~~~~~~g~~~~~ 113 (360)
..+|++.++++.+. ++++++++| ++++.+++..++++||+ |+++.|+|... ...+...|.+++.
T Consensus 62 ~~~Le~~lA~l~g~-------~~~v~~~sG-~~Ai~~~l~all~pGD~----Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~ 129 (405)
T PRK08776 62 RDLLGEALAELEGG-------AGGVITATG-MGAINLVLNALLQPGDT----LVVPHDAYGGSWRLFNALAKKGHFALIT 129 (405)
T ss_pred HHHHHHHHHHHhCC-------CceEEEcCH-HHHHHHHHHHHhCCCCE----EEEccCCchHHHHHHHHHHHhcCcEEEE
Confidence 37899999999884 345655555 79999999999999998 99999999974 3445556888888
Q ss_pred ecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-CcCCCCCCccEEEeccccc
Q 018172 114 WDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-TPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-~~~~~~~~~~i~~~S~sK~ 188 (360)
++. |.+.+.. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+.. .++ ..+.+++++|.+|.
T Consensus 130 v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl--~~gaDivv~S~tK~ 207 (405)
T PRK08776 130 ADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPL--EFGADLVLHSTTKY 207 (405)
T ss_pred ECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCcc--cccCCEEEecCcee
Confidence 875 3344433 468999999999999999988 6777888889999999999986532 222 34667999999999
Q ss_pred cCCC-CceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 189 TGHA-GSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 189 ~~~~-G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
++.+ +...|++++.++++.+.+...+...+.+.+++.+.++...+ ++++...++.+++...+.+.|++++.
T Consensus 208 l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl--------~tl~~r~~~~~~na~~la~~L~~~p~ 279 (405)
T PRK08776 208 INGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGL--------RTLDARLRVHQENADAIAALLDGHAA 279 (405)
T ss_pred ecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh--------CcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9744 57789988867888888877666556667777766665433 45677788888899999999999986
Q ss_pred cccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhhCe
Q 018172 268 FGLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERI 311 (360)
Q Consensus 268 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI 311 (360)
+..+.+++.. +........+.+..+.+.++++ +.+.+.+.+-.+
T Consensus 280 v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l 328 (405)
T PRK08776 280 VNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLRY 328 (405)
T ss_pred eeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHHHHHhCCc
Confidence 6554443321 1111112234556778888654 444444444343
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=197.95 Aligned_cols=289 Identities=13% Similarity=0.022 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc--HHHHHHhCCeeeeecC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY--PAETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~--~~~~~~~g~~~~~~~~ 116 (360)
+++|+.++++++. ...+.+++++|+|+++..++..++++||+ |+++++.|.+. ...++..|++++.++.
T Consensus 45 ~~~~~~l~~~~g~-----~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~----Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~ 115 (401)
T PLN02409 45 KELLEDVKYIFKT-----KSGTPFIFPTTGTGAWESALTNTLSPGDK----VVSFRIGQFSLLWIDQMQRLNFDVDVVES 115 (401)
T ss_pred HHHHHHHHHHhCC-----CCCCEEEEeCCcHHHHHHHHHhcCCCCCE----EEEeCCCchhHHHHHHHHHcCCceEEEEC
Confidence 4555555566654 12346889999999999999999999998 99999988766 4667888999998886
Q ss_pred Ccc-cccc-------C----CCeeEEEEcCCCCCCcccch-HHHHHH--hhhcCcEEEEeecccCCCCCcCCCCCCccEE
Q 018172 117 DAN-TFDK-------N----NGAYIEVVNSPNNPDGTIRE-AVLAKV--NRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181 (360)
Q Consensus 117 ~~~-~~~~-------~----~~~~~i~~~~p~NPtG~~~~-~~~~~~--~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~ 181 (360)
+.+ +++. + +++++|++++++||||..++ +.+.++ |+++|+++|+|++++.+..+......+.+++
T Consensus 116 ~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~ 195 (401)
T PLN02409 116 PWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVA 195 (401)
T ss_pred CCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEE
Confidence 642 2211 1 37899999999999999999 667777 8889999999999986555444456678899
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHHh------------------hccccCChHHHHHHHHHhcccCCCchhH
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIE------------------LGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
+.|.+|.++.|. ++||++. +++.++.+..... ....+++...+.++.++++.+.. ..
T Consensus 196 ~~s~~K~l~~P~-G~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~---~G 270 (401)
T PLN02409 196 LTGSQKALSLPT-GLGIVCA-SPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFE---EG 270 (401)
T ss_pred EEcCccccCcCC-CcceeEE-CHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHH---hh
Confidence 999999886433 6999998 7888877653210 11335666778888888886542 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHH-HHHHHhhCeeeeCCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDC-EKLLRAERIMARGGRRF 319 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~l~~~gI~~~pg~~f 319 (360)
+++++++++++++++.+.|+.. ++.+..+.... ..+...++.+++. +.+ ..++.++||.+.+|..-
T Consensus 271 ~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~---------~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~ 340 (401)
T PLN02409 271 LENVIARHARLGEATRLAVEAW-GLKLCTKKPEW---------RSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNK 340 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhh---------cccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCc
Confidence 8899999999999999999887 45544332111 1111345555432 444 45567789999998632
Q ss_pred CCCCCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 320 GADAKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 320 ~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
.....+|++.-. +++++.+++++|.+++....
T Consensus 341 -~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 341 -VAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred -ccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 136789999755 89999999999999997644
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=194.89 Aligned_cols=266 Identities=17% Similarity=0.104 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH---HHHHhCCeeeeec
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA---ETDYLRSGLYKWD 115 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~---~~~~~g~~~~~~~ 115 (360)
.++++.++++++ ++ ++++++|+++++..++..++++||. |+++.|+|..+.. .....|++++.++
T Consensus 35 ~~l~~~~a~~~g-------~~-~~~~~~~gt~a~~~~~~~l~~~gd~----v~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 102 (338)
T cd06502 35 AKLEARAAELFG-------KE-AALFVPSGTAANQLALAAHTQPGGS----VICHETAHIYTDEAGAPEFLSGVKLLPVP 102 (338)
T ss_pred HHHHHHHHHHhC-------CC-eEEEecCchHHHHHHHHHhcCCCCe----EEEecCcceeeecCCcHHHHcCceEEeec
Confidence 899999999998 33 5777878889999999999999998 9999999987543 3455799999887
Q ss_pred CCcc-----cccc--C-------CCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC----CCcCC
Q 018172 116 GDAN-----TFDK--N-------NGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ----YTPIT 173 (360)
Q Consensus 116 ~~~~-----~~~~--~-------~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~----~~~~~ 173 (360)
.+.. .+.. + +++++|++++|||| |..++ +.+.++|+++|+++++|++|..+. ..+..
T Consensus 103 ~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~ 181 (338)
T cd06502 103 GENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALK 181 (338)
T ss_pred CCCCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHH
Confidence 6432 2211 1 26899999999998 54444 346677888999999999985211 01111
Q ss_pred -CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc--cccCChHHHHHHHHHhcccCCCchhHHHHHHHH
Q 018172 174 -GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG--SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRL 250 (360)
Q Consensus 174 -~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (360)
...+.++++.|+||.++++| |+++..++++++.+....... +.+.+.+.+.++.+.|+ .. .+ .+..++
T Consensus 182 ~~~~~~d~~~~s~sK~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~---~~--~~-~~~~~~ 252 (338)
T cd06502 182 TYKSGVDSVSFCLSKGGGAPV---GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALE---ND--LW-LRRLRH 252 (338)
T ss_pred HHHhcCCEEEEeccccCCCcc---ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhc---Cc--hH-HHHHHH
Confidence 12345577889999999887 554433889999988765432 33456667777766665 21 23 345567
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HH---HHHHH---HhhCeeeeCCCCCCCCC
Q 018172 251 MSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-ED---CEKLL---RAERIMARGGRRFGADA 323 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~l---~~~gI~~~pg~~f~~~~ 323 (360)
+.++++++.+.|++++. .... +.++|+.+..+.. .. +.+.+ .++|+.+.+.. .
T Consensus 253 ~~~~~~~l~~~L~~~~~-~~~~--------------~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~~~-----~ 312 (338)
T cd06502 253 DHEMARRLAEALEELGG-LESE--------------VQTNIVLLDPVEANAVFVELSKEAIERRGEGVLFYAWG-----E 312 (338)
T ss_pred HHHHHHHHHHHHHhcCC-Cccc--------------ccCCeEEEecCCccHHHHHHHHHHHHhhhCCEEEEecC-----C
Confidence 77778999999998854 2211 2334556655432 22 22222 25799987742 2
Q ss_pred CeEEEEecC--ChHHHHHHHHHHHH
Q 018172 324 KYARVSMLS--REEIFNIFLERLSA 346 (360)
Q Consensus 324 ~~~R~s~~~--~~e~~~~~~~~l~~ 346 (360)
+++|+++.. ++++++++++++++
T Consensus 313 ~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 313 GGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred CeEEEEeecCCCHHHHHHHHHHHhc
Confidence 789999854 89999999999865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=197.19 Aligned_cols=276 Identities=16% Similarity=0.093 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc------CCCCCCCceEEEeCCCCCCcHHHHHHhCCeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS------SPGGPEPISVVSAAPYYSQYPAETDYLRSGLY 112 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~------~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~ 112 (360)
.++|+.+++++|. +++++++++|+++++..++..+. ++||+ |++++++|.++...++..|++++
T Consensus 62 ~~~~~~la~~~g~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~----vl~~~~~h~~~~~~~~~~G~~~~ 131 (373)
T TIGR03812 62 EEVVGSLGNLLHL------PDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPN----IIVPESAHFSFEKAAEMLGLELR 131 (373)
T ss_pred HHHHHHHHHHhCC------CCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcE----EEECCcchHHHHHHHHHcCCeEE
Confidence 7888999999986 45578899999999888776653 35677 99999999999999999999999
Q ss_pred eecCCcc------cccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC---------cC-C
Q 018172 113 KWDGDAN------TFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT---------PI-T 173 (360)
Q Consensus 113 ~~~~~~~------~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~---------~~-~ 173 (360)
.++.+.+ .+.. +++++.+++.+|+||||...+ +.+.++|+++++++++|++|.....+ .+ .
T Consensus 132 ~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~ 211 (373)
T TIGR03812 132 YAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDF 211 (373)
T ss_pred EEeeCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccc
Confidence 8886532 1211 345655555568999999987 67888888899999999999743211 11 1
Q ss_pred CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhcc--------ccCChHHHHHHHHHhcccCCCchhHHH
Q 018172 174 GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGS--------IGVSKESQLRAAKILGIVSDDYPNFFE 245 (360)
Q Consensus 174 ~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (360)
...+.+.+..|.+| |++++.++|+++..++++++.+.....+.. .+.+.....++.++++.+.. ..++
T Consensus 212 ~~~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~---~g~~ 287 (373)
T TIGR03812 212 SLPGVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGR---EGYR 287 (373)
T ss_pred cCCCCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCH---HHHH
Confidence 12244566778899 766778888766557888877642211111 12334555566666664432 6778
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCe
Q 018172 246 YGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKY 325 (360)
Q Consensus 246 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~ 325 (360)
+..+++.++++++.+.|++++...+.. +..+++.+..++...+.+.|.++||.++++. .+++
T Consensus 288 ~~~~~~~~~~~~l~~~L~~~g~~~~~~--------------~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~----~~~~ 349 (373)
T TIGR03812 288 KIVAECMENTRYLVEELKKIGFEPVIE--------------PVLNIVAFEVDDPEEVRKKLRDRGWYVSVTR----CPKA 349 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEcC--------------CCceEEEEEeCCHHHHHHHHHHCCceeccCC----CCCE
Confidence 889999999999999999985433322 1233666776665678888889999998742 2568
Q ss_pred EEEEecC--ChHHHHHHHHHHHH
Q 018172 326 ARVSMLS--REEIFNIFLERLSA 346 (360)
Q Consensus 326 ~R~s~~~--~~e~~~~~~~~l~~ 346 (360)
+|+|+.. +++++++++++|++
T Consensus 350 iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 350 LRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred EEEEEECCCCHHHHHHHHHHHhh
Confidence 9999864 89999999999976
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-24 Score=200.17 Aligned_cols=286 Identities=14% Similarity=0.099 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc----CCCCCCCceEEEeCCCCCCcHHHH---HHhCCee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS----SPGGPEPISVVSAAPYYSQYPAET---DYLRSGL 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~----~~gd~~~~~vl~~~p~~~~~~~~~---~~~g~~~ 111 (360)
+++|+.++++++. ++++|++|+|+|++++.++..+. ++|++ |+++.++|+.+...+ +..|+++
T Consensus 50 ~~~r~~la~~~g~------~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~----Vi~~~~~h~s~~~~~~~~~~~g~~v 119 (402)
T TIGR02006 50 ENARNQVAELIGA------DSREIVFTSGATESNNLAIKGIAHFYKSKGNH----IITSKTEHKAVLDTCRYLEREGFEV 119 (402)
T ss_pred HHHHHHHHHHhCC------CCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCE----EEECCCccHHHHHHHHHHHhcCCEE
Confidence 7889999999986 55689999999999999887763 57887 999999999876654 3459999
Q ss_pred eeecCCccc------ccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEE
Q 018172 112 YKWDGDANT------FDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182 (360)
Q Consensus 112 ~~~~~~~~~------~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~ 182 (360)
+.++.+.++ +.. +++++++++++++||||...+ +.+.++|+++|+++++|++++.+..+......+.++++
T Consensus 120 ~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~ 199 (402)
T TIGR02006 120 TYLPPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMS 199 (402)
T ss_pred EEEccCCCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEE
Confidence 988876432 111 457899999999999999998 67788888899999999999876554334456788999
Q ss_pred eccccccCCCCceEEEEeecCHHHHHHHHHHH-------hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 018172 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFI-------ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERW 255 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (360)
.|++|.+|++| +|+++.. ++....+.... .....+.+.....++.++++.+. ..++...+++++.+
T Consensus 200 ~s~~K~~gp~G--~G~l~~~-~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~----~~~~~~~~~~~~l~ 272 (402)
T TIGR02006 200 ISGHKIYGPKG--IGALYVR-RKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAK----EEMAQDTAHVLALR 272 (402)
T ss_pred EehhhhcCCCc--eEEEEEc-cCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHH----HhHHHHHHHHHHHH
Confidence 99999888667 8888773 32222222111 12233556666666667777553 45788889999999
Q ss_pred HHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCC--------------
Q 018172 256 NMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGA-------------- 321 (360)
Q Consensus 256 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~-------------- 321 (360)
+++.+.|+.++++.+..+.... . +....+.+...+.+.+...| ++|.++.|..+..
T Consensus 273 ~~l~~~l~~~~~v~~~~~~~~~-------~-p~~~~v~f~~~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~ 342 (402)
T TIGR02006 273 DRLLNGIKSIEEVYLNGDLEHR-------V-PGNLNVSFNYVEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGI 342 (402)
T ss_pred HHHHHHHhcCCCEEEeCCcccc-------C-CCeEEEEEeCcCHHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCC
Confidence 9999999988765443221100 0 00001222222234444444 4888887764421
Q ss_pred ----CCCeEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 322 ----DAKYARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 322 ----~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
..+++|+|+.. ++||+++++++|+++++..
T Consensus 343 ~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~ 378 (402)
T TIGR02006 343 NDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKL 378 (402)
T ss_pred ChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 13789999976 8999999999999998654
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=195.64 Aligned_cols=281 Identities=14% Similarity=0.102 Sum_probs=192.4
Q ss_pred HHHHHH----HHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH-----HHHhCC
Q 018172 39 PELAEA----INNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE-----TDYLRS 109 (360)
Q Consensus 39 ~~lr~~----la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~-----~~~~g~ 109 (360)
+++++. ++++++. +..+|++++ +++++..++.+++++||+ |+++.|+|..+... ++..|.
T Consensus 64 ~~l~~~~~~~~~~~~g~------~~~~v~~~s-gt~a~~~~l~~l~~~Gd~----Vl~~~~~~~~~~~~~~~~~~~~~g~ 132 (402)
T cd00378 64 DEIEDLAIERAKKLFGA------EYANVQPHS-GSQANLAVYFALLEPGDT----IMGLDLSHGGHLTHGSFTKVSASGK 132 (402)
T ss_pred HHHHHHHHHHHHHHhCC------CceeeecCC-cHHHHHHHHHHhcCCCCE----EEEecCccCccccccccccccccce
Confidence 666664 4456664 333455555 579999999999999998 99999999877544 666787
Q ss_pred eeeeecCCcc----cccc--------CCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccCCC-----CCcC
Q 018172 110 GLYKWDGDAN----TFDK--------NNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQ-----YTPI 172 (360)
Q Consensus 110 ~~~~~~~~~~----~~~~--------~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~~~-----~~~~ 172 (360)
+++.++.+.+ .++. .++++++++++|+||+...+ +.+.++|+++|+++|+|++|..+. ....
T Consensus 133 ~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~~~~~~-~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~ 211 (402)
T cd00378 133 LFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYPRPIDF-KRFREIADEVGAYLLVDMAHVAGLVAGGVFPNP 211 (402)
T ss_pred eEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccCCCcCH-HHHHHHHHhcCCEEEEEccchhhhhhcccCCCc
Confidence 7666654322 2211 35789999999988754332 456777888999999999974211 1111
Q ss_pred CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHH-HHHHHhcccCCCchhHHHHHHHHH
Q 018172 173 TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQL-RAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 173 ~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
.. ..++++.|+||.+ +|.|+||+++.++++++.+.+.......+.+...+. ++..++..... .+.++.++++
T Consensus 212 ~~--~~dv~~~s~sK~l--~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~ 284 (402)
T cd00378 212 LP--GADVVTTTTHKTL--RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALE---PEFKAYAKQV 284 (402)
T ss_pred cc--CCcEEEeccccCC--CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhh---HHHHHHHHHH
Confidence 12 3468899999976 688999999954589999877654333343333332 32333432221 3667788889
Q ss_pred HHHHHHHHHHHHhcCCcccC-CCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeeeCCC----CCC-C
Q 018172 252 SERWNMLRQVIRQSGVFGLP-EYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMARGGR----RFG-A 321 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~pg~----~f~-~ 321 (360)
+++++++.+.|++++ +.+. .+.++ +++|+++++ ..++.++|+++||.+.++. .++ .
T Consensus 285 ~~~~~~l~~~L~~~g-~~~~~~~~~~-------------~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~ 350 (402)
T cd00378 285 VENAKALAEALKERG-FKVVSGGTDN-------------HLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPF 350 (402)
T ss_pred HHHHHHHHHHHHhCC-CeEeecCCCC-------------eEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCC
Confidence 999999999999884 4433 23333 378888863 2667788999999998643 221 1
Q ss_pred CCCeEEEEecC------ChHHHHHHHHHHHHHHhchh
Q 018172 322 DAKYARVSMLS------REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 322 ~~~~~R~s~~~------~~e~~~~~~~~l~~~~~~~~ 352 (360)
.+.++|+++.. ++++++++++.|++++.+..
T Consensus 351 ~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~~~ 387 (402)
T cd00378 351 VPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAE 387 (402)
T ss_pred CCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 35689998854 48999999999999887654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-24 Score=200.84 Aligned_cols=268 Identities=13% Similarity=0.072 Sum_probs=181.3
Q ss_pred CcEEEcCChHHHHHHHHHhhcCCCCC---CCceEEEeCCCCCCcHHHHHHhCCeee-------------eec-CCccccc
Q 018172 60 RHIVIGTGSTQLYQAALYALSSPGGP---EPISVVSAAPYYSQYPAETDYLRSGLY-------------KWD-GDANTFD 122 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~~gd~---~~~~vl~~~p~~~~~~~~~~~~g~~~~-------------~~~-~~~~~~~ 122 (360)
+++++|+|+++++..+++.+...++. +..+++..+++|..+.......+.... .++ .|.+.+.
T Consensus 97 ~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 176 (396)
T PRK02627 97 DKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALK 176 (396)
T ss_pred CEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHH
Confidence 58999999999999999977644321 112499999999888665554432211 111 0222222
Q ss_pred c--CCCeeEEEEcCCCCCCc-ccch----HHHHHHhhhcCcEEEEeecccCCCCCc--C-CCCCCccEEEeccccccCCC
Q 018172 123 K--NNGAYIEVVNSPNNPDG-TIRE----AVLAKVNRSAEGKLIHDLAYYWPQYTP--I-TGAADHDIMLFTLSKCTGHA 192 (360)
Q Consensus 123 ~--~~~~~~i~~~~p~NPtG-~~~~----~~~~~~~~~~~~~li~D~ay~~~~~~~--~-~~~~~~~i~~~S~sK~~~~~ 192 (360)
. .+++++|++..++||+| .+++ +.+.++|+++|+++|+||+|.+..... . ....+...-+.||||.++ +
T Consensus 177 ~~i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~sK~~~-~ 255 (396)
T PRK02627 177 AAITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLAKGLG-G 255 (396)
T ss_pred HhcCCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEEcchhh-C
Confidence 2 35789999999999999 4555 466788999999999999998432111 0 011111111457999999 9
Q ss_pred CceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCC
Q 018172 193 GSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPE 272 (360)
Q Consensus 193 G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 272 (360)
|+|+||+++ ++++++.+.......+++.+++.|.++.++++.+... .+.++.++.....++.+.+.+.+++.+..
T Consensus 256 G~rig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 330 (396)
T PRK02627 256 GVPIGAVLA-KEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEE--GLLENAAEVGEYLRAKLRELLEKYPGIKE-- 330 (396)
T ss_pred CcccEEEEE-cHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHhCCCeee--
Confidence 999999999 7888888876545567789999999999988865432 44555555544444444444444432111
Q ss_pred CCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHh
Q 018172 273 YPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGADAKYARVSML--SREEIFNIFLERLSAIQG 349 (360)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~ 349 (360)
..+.+.|+|+.++.. ..+.+.|.++||.+.|+. .+++|++++ .+++++++++++|.++++
T Consensus 331 ------------~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~lRi~~~~~~~~~~i~~~~~~l~~~l~ 393 (396)
T PRK02627 331 ------------VRGLGLMIGIELDRPAAEIVKKALEKGLLINVTG-----DNVLRLLPPLIISKEEIDEAVDRLEEVLK 393 (396)
T ss_pred ------------eccCcEEEEEEecCcHHHHHHHHHHCCeEEeecC-----CCEEEEECCcccCHHHHHHHHHHHHHHHH
Confidence 123445778877433 556666667799999853 468999864 499999999999999886
Q ss_pred c
Q 018172 350 G 350 (360)
Q Consensus 350 ~ 350 (360)
+
T Consensus 394 ~ 394 (396)
T PRK02627 394 E 394 (396)
T ss_pred h
Confidence 4
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=193.96 Aligned_cols=279 Identities=15% Similarity=0.084 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~ 114 (360)
.++++.+++++|. ++.++++++|+++++..++..+.+ ++++ |+++++.|..+...++..|++++.+
T Consensus 62 ~~~~~~la~~~g~------~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~----vl~~~~~h~s~~~~~~~~g~~~~~v 131 (371)
T PRK13520 62 EEAVEMLGELLHL------PDAYGYITSGGTEANIQAVRAARNLAKAEKPN----IVVPESAHFSFDKAADMLGVELRRA 131 (371)
T ss_pred HHHHHHHHHHhCC------CCCCeEEecCcHHHHHHHHHHHHhhccCCCce----EEecCcchHHHHHHHHHcCceEEEe
Confidence 5788888888885 445789999999999888877754 3566 9999999999999999999999988
Q ss_pred cCCcc------cccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCc------CC-CCCCc
Q 018172 115 DGDAN------TFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTP------IT-GAADH 178 (360)
Q Consensus 115 ~~~~~------~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~------~~-~~~~~ 178 (360)
+.+.+ .+.. ++++++|++++++||||...+ +++.++|+++|+++++|++|.....+. .. ...+.
T Consensus 132 ~~~~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~v 211 (371)
T PRK13520 132 PLDDDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGV 211 (371)
T ss_pred cCCCCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCC
Confidence 86533 2222 356778888889999999998 778888888999999999998432110 11 12345
Q ss_pred cEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc--------cccCChHHHHHHHHHhcccCCCchhHHHHHHHH
Q 018172 179 DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG--------SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRL 250 (360)
Q Consensus 179 ~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (360)
+.+..|.+| |+.+|.++|+++..++++++.+.....+. ..+.+.....++.++++.+.. ..+++.+++
T Consensus 212 d~~~~s~~K-~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~---~g~~~~~~~ 287 (371)
T PRK13520 212 DSITIDPHK-MGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGR---EGYRKVVER 287 (371)
T ss_pred ceEEECCcc-ccCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcH---hHHHHHHHH
Confidence 667778899 55578899988875777777764221111 112234556666666765432 556788899
Q ss_pred HHHHHHHHHHHHHhcCCcc-cCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEE
Q 018172 251 MSERWNMLRQVIRQSGVFG-LPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVS 329 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s 329 (360)
..++++++.+.|+++ ++. +..+. .+++.+++++.+.+.+.|.++||.+.++. .++++|+|
T Consensus 288 ~~~~~~~l~~~L~~~-g~~~~~~~~--------------~~~v~~~~~~~~~v~~~L~~~gi~v~~~~----~~~~iRis 348 (371)
T PRK13520 288 CMENTRWLAEELKER-GFEPVIEPV--------------LNIVAFDDPNPDEVREKLRERGWRVSVTR----CPEALRIV 348 (371)
T ss_pred HHHHHHHHHHHHHhC-CCEEecCCC--------------ceEEEEecCCHHHHHHHHHHCCceeccCC----CCCEEEEE
Confidence 999999999999987 444 32221 23556666655788888888999988743 24689999
Q ss_pred ecC--ChHHHHHHHHHHHHHHhc
Q 018172 330 MLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 330 ~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
+.. ++|++++++++|++++++
T Consensus 349 ~~~~~t~edi~~~~~~l~~~~~~ 371 (371)
T PRK13520 349 CMPHVTREHIENFLEDLKEVKKR 371 (371)
T ss_pred EECCCCHHHHHHHHHHHHHHhhC
Confidence 864 899999999999988764
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-23 Score=194.58 Aligned_cols=289 Identities=17% Similarity=0.175 Sum_probs=188.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH----HHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET----DYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~~~~ 113 (360)
..+|++.+++++|. +. .+++++++.++..++..++++||+ |+++.|.|..+...+ ...|++++.
T Consensus 67 ~~~Le~~lA~l~G~------~~--~~~~~sG~~Ai~~~l~~~l~~Gd~----Vl~~~~~y~~~~~~~~~~~~~~G~~v~~ 134 (398)
T PRK07504 67 VDMFEKRMCALEGA------ED--ARATASGMAAVTAAILCQVKAGDH----VVAARALFGSCRYVVETLLPRYGIESTL 134 (398)
T ss_pred HHHHHHHHHHHhCC------Ce--eeEecCHHHHHHHHHHHHhCCCCE----EEEcCCchhHHHHHHHHHHhhcCeEEEE
Confidence 48999999999985 32 344667788888888888999998 999999999876554 456888888
Q ss_pred ec-CCcccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WD-GDANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~-~~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++ .|.+.+.. +++|++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+... .+...+.+++++|+||.+
T Consensus 135 vd~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~-~~~~~gaDivv~S~sK~l 213 (398)
T PRK07504 135 VDGLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQ-KPLELGAHIVVYSATKHI 213 (398)
T ss_pred ECCCCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccC-CchhhCCCEEEeeccccc
Confidence 86 33344433 578999999999999999998 67788888899999999999854322 122446789999999999
Q ss_pred CCCCceEE-EEeecCHHHHH-HHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 190 GHAGSRIG-WALVKDTEVAR-KMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 190 ~~~G~r~G-~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
+.+|+++| ++++ +++.+. .++......+...+++....+ +..+ +.+....++..++...+.+.|++++.
T Consensus 214 ~g~g~~~GG~vv~-~~~~i~~~~~~~~~~~g~~~s~~~A~~~---l~~L-----~tl~~R~~~~~~na~~la~~L~~~p~ 284 (398)
T PRK07504 214 DGQGRCLGGVVLS-DKAWIEEHLQDYFRHTGPSLSPFNAWTL---LKGL-----ETLPVRVRQQTESAAAIADFLAGHPK 284 (398)
T ss_pred cCCccceEEEEEe-CcHHHHHHHHHHHHHhCCCCCHHHHHHH---Hhcc-----chHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88999996 5555 555554 455443333444444444444 4432 33444555556888888999999877
Q ss_pred cccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhhCeeee---CCC----------------------
Q 018172 268 FGLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMAR---GGR---------------------- 317 (360)
Q Consensus 268 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~---pg~---------------------- 317 (360)
+..+.++|.. +........+.++.+.++++++ +.+.+.+..-.+.-. -|.
T Consensus 285 v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~ 364 (398)
T PRK07504 285 VARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIVRISNNLGDAKSLITHPATTTHKNLSPEARA 364 (398)
T ss_pred ccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCeeeeCCCCCCcccCCHHHHH
Confidence 6644444321 0111111234466788888644 444444444343321 111
Q ss_pred CCCCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 318 RFGADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 318 ~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
..|..++.+|||++.+ +.+.+++.|.+.+++
T Consensus 365 ~~gi~~~liR~svGlE--~~~dl~~dl~~al~~ 395 (398)
T PRK07504 365 ELGISEGFLRLSAGLE--DTDDLIEDLAAALKK 395 (398)
T ss_pred hcCCCCCeEEEEeccC--CHHHHHHHHHHHHHh
Confidence 1122356899999762 234455555555543
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=197.88 Aligned_cols=271 Identities=16% Similarity=0.120 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc---C----CCCCCCceEEEeCCCCCCcHHHHHHhCCee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS---S----PGGPEPISVVSAAPYYSQYPAETDYLRSGL 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~---~----~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~ 111 (360)
.+|++.++++++. +++++++|+++++..++..+. . ++++ |++++|+|..+...+...+...
T Consensus 72 ~~l~~~la~~~g~--------~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~----vi~~~~~yh~~~~~~~~~~~~~ 139 (379)
T TIGR00707 72 EELAEKLVEHSGA--------DRVFFCNSGAEANEAALKLARKYTGDKGKEKKK----IIAFENSFHGRTMGALSATGQP 139 (379)
T ss_pred HHHHHHHHhhCCC--------CEEEEeCCcHHHHHHHHHHHHHHhhccCCCCCe----EEEECCCcCCccHHHHHhcCCh
Confidence 7777888887763 389999999999999888662 2 2566 9999999998877766555432
Q ss_pred ee-------------ecC-Ccccccc--CCCeeEEEEcCCCCCCccc-ch----HHHHHHhhhcCcEEEEeecccCCCCC
Q 018172 112 YK-------------WDG-DANTFDK--NNGAYIEVVNSPNNPDGTI-RE----AVLAKVNRSAEGKLIHDLAYYWPQYT 170 (360)
Q Consensus 112 ~~-------------~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~-~~----~~~~~~~~~~~~~li~D~ay~~~~~~ 170 (360)
.. ++. |.+.+.. ++++++|+++.++||+|.. ++ +.+.++|+++++++|+||+|.+....
T Consensus 140 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~ 219 (379)
T TIGR00707 140 KYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRT 219 (379)
T ss_pred hhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc
Confidence 11 110 2222222 3468899987666778864 44 45677888899999999999842211
Q ss_pred ----c--CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHH
Q 018172 171 ----P--ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFF 244 (360)
Q Consensus 171 ----~--~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (360)
+ ..+... + +.+|||.++ +|+|+||+++ ++++++.+........++.+++.|.++.++|+.+..
T Consensus 220 g~~~~~~~~~~~~-d--~~t~sK~~~-~G~riG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~------ 288 (379)
T TIGR00707 220 GKFFAYEHYGIEP-D--IITLAKGLG-GGVPIGATLA-KEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEK------ 288 (379)
T ss_pred chhhhHHhcCCCC-C--EEEEccccc-CCcccEEEEE-cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHh------
Confidence 1 111122 2 237899999 9999999998 789999887654445677899999999988875422
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCCCC
Q 018172 245 EYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGADA 323 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~~~ 323 (360)
.+.++.++++++.+.+.|+++. ...... ...+.++|+|+.+++. ..+.+.|.++||.+.|+. .
T Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~ 352 (379)
T TIGR00707 289 ERLLENVKEKGDYFKERLEELG-KNYPNK----------EVRGKGLMLGIELEAPCKDIVKKALEKGLLVNCAG-----P 352 (379)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-hhCCCC----------ccccCceEEEEEecCcHHHHHHHHHHCCcEEeeCC-----C
Confidence 2355666777777777776552 111000 1123455788887644 677788899999999842 4
Q ss_pred CeEEEEec--CChHHHHHHHHHHHHHH
Q 018172 324 KYARVSML--SREEIFNIFLERLSAIQ 348 (360)
Q Consensus 324 ~~~R~s~~--~~~e~~~~~~~~l~~~~ 348 (360)
+++|++++ .++|++++++++|++++
T Consensus 353 ~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 353 KVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 68999974 49999999999998764
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=193.80 Aligned_cols=252 Identities=15% Similarity=0.160 Sum_probs=172.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH----HHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA----ETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~----~~~~~g~~~~~ 113 (360)
..+|++++++++|. ++ .++++++++++.+++..++++||+ |+++.|.|..... .+...|++++.
T Consensus 67 ~~~le~~lA~l~g~-------~~-~i~~~sG~~Al~~~l~~ll~~Gd~----Viv~~~~y~~t~~~~~~~~~~~G~~v~~ 134 (403)
T PRK07503 67 LALLEQRMASLEGG-------EA-AVALASGMGAITATLWTLLRPGDE----VIVDQTLYGCTFAFLHHGLGEFGVTVRH 134 (403)
T ss_pred HHHHHHHHHHHhCC-------Cc-EEEEcCHHHHHHHHHHHHcCCCCE----EEEccCccchHHHHHHHHHhhCCEEEEE
Confidence 48999999999985 33 455666788999999999999998 9999999976543 34567999998
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+... .+-..+.+++++|+||.+
T Consensus 135 vd~~d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~-~~l~~g~Di~v~S~tK~l 213 (403)
T PRK07503 135 VDLTDPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQ-RPLELGADLVVHSATKYL 213 (403)
T ss_pred eCCCCHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC-CchhhCCCEEEccccccc
Confidence 8764 344433 468999999999999999988 67788888899999999999854221 112346689999999999
Q ss_pred CCCC-ceEEEEeecCHHHHHHHHHH--HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 190 GHAG-SRIGWALVKDTEVARKMTRF--IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 190 ~~~G-~r~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
+.+| .+.|+++. ++++++.++.. +...+.+.+++.+..+...+ +.+....++..++...+.+.|.+++
T Consensus 214 ~g~gd~~gG~v~~-~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L--------~tl~~r~~~~~~na~~~a~~L~~~p 284 (403)
T PRK07503 214 GGHGDITAGLVVG-GKALADRIRLEGLKDMTGAVMSPFDAFLLMRGL--------KTLALRMDRHCASAQAVAEWLARHP 284 (403)
T ss_pred cCCCceeEEEEEc-CHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCc--------chHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9665 77888886 88888888743 43344556666665544333 2333344444577788888999988
Q ss_pred CcccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhhCe
Q 018172 267 VFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERI 311 (360)
Q Consensus 267 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI 311 (360)
.+..+.+++.. +..........+..+.+.++++ +...+.+.+-.+
T Consensus 285 ~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~l~l 334 (403)
T PRK07503 285 AVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIAAGRRFMNALQL 334 (403)
T ss_pred CccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCCHHHHHHHHHhCCc
Confidence 66654443321 1111111123455667777544 334444433333
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-23 Score=195.04 Aligned_cols=276 Identities=16% Similarity=0.158 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC--CCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS--PGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~--~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
.+|++.++++++. ++.+++++ +++++..++..+.. +++. |+.....|......+...|.++..++.
T Consensus 93 ~~Le~~la~~~g~-------~~~l~~~s-G~~an~~ai~~l~~~~~~~~----v~~~~~~h~s~~~~~~~~g~~~~~~~~ 160 (402)
T TIGR01821 93 VELEAELADLHGK-------ESALVFTS-GYVANDATLATLAKIIPGCV----IFSDELNHASMIEGIRHSGAEKFIFRH 160 (402)
T ss_pred HHHHHHHHHHhCC-------CeEEEECc-hHHHHHHHHHHhhCCCCCCE----EEEcchHhHHHHHHHHHcCCeEEEECC
Confidence 6778888887763 33455555 58888888888764 5554 555556777777777778888776653
Q ss_pred -Ccccccc-----C-CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC----CcCC---CC-CCccE
Q 018172 117 -DANTFDK-----N-NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY----TPIT---GA-ADHDI 180 (360)
Q Consensus 117 -~~~~~~~-----~-~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~----~~~~---~~-~~~~i 180 (360)
|.+.++. + .++++|++++|+||||.+.+ +.+.++|+++++++|+||+|..+.+ .... +. .+.++
T Consensus 161 ~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~di 240 (402)
T TIGR01821 161 NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDI 240 (402)
T ss_pred CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeE
Confidence 2222211 2 35789999999999999988 7788889999999999999983221 1111 11 23478
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh--ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL--GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
+++||||+||++| ||+++ ++++++.+...... .+.+.++..+.++.++++.+.. . +..++++.++++++
T Consensus 241 v~~t~sKa~g~~G---G~i~~-~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~----~-~~~~~~~~~~~~~l 311 (402)
T TIGR01821 241 IEGTLAKAFGVVG---GYIAA-SRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKE----S-QDLRRAHQENVKRL 311 (402)
T ss_pred EEEechhhhccCC---ceeec-CHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhc----C-HHHHHHHHHHHHHH
Confidence 8999999999888 99988 88899988765432 2345777788888888875432 1 45566677888999
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHH-HhhCeeeeCCCCCCC--CCCeEEEEecC
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLL-RAERIMARGGRRFGA--DAKYARVSMLS 332 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l-~~~gI~~~pg~~f~~--~~~~~R~s~~~ 332 (360)
.+.|++++ +.+..+. ++++.+.+++. ..+.+.| +++||.+++...... ..+++|+++..
T Consensus 312 ~~~L~~~g-~~~~~~~--------------~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~ 376 (402)
T TIGR01821 312 KNLLEALG-IPVIPNP--------------SHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTP 376 (402)
T ss_pred HHHHHHcC-CCcCCCC--------------CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCC
Confidence 99998874 3333222 23445555432 4455555 566999988543322 24689999854
Q ss_pred --ChHHHHHHHHHHHHHHhc
Q 018172 333 --REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 333 --~~e~~~~~~~~l~~~~~~ 350 (360)
++|++++++++|++++++
T Consensus 377 ~~t~edi~~~~~~l~~~~~~ 396 (402)
T TIGR01821 377 AHTDKMIDDLVEALLLVWDR 396 (402)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999865
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=197.86 Aligned_cols=286 Identities=15% Similarity=0.085 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc----CCCCCCCceEEEeCCCCCCcHHHHHH---hCCee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS----SPGGPEPISVVSAAPYYSQYPAETDY---LRSGL 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~----~~gd~~~~~vl~~~p~~~~~~~~~~~---~g~~~ 111 (360)
+++|+.++++++. ++++|++|+|+|+++++++.++. ++||+ |+++.++|+.....+.. .|+++
T Consensus 52 ~~~r~~ia~~~g~------~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~----Vi~~~~~~~s~~~~~~~~~~~g~~~ 121 (404)
T PRK14012 52 DIARNQIADLIGA------DPREIVFTSGATESDNLAIKGAAHFYQKKGKH----IITSKTEHKAVLDTCRQLEREGFEV 121 (404)
T ss_pred HHHHHHHHHHcCc------CcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCE----EEEecCccHHHHHHHHHHHhCCCEE
Confidence 7889999999986 55689999999999999887763 67888 99999999888665544 49999
Q ss_pred eeecCCcccc-cc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEE
Q 018172 112 YKWDGDANTF-DK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182 (360)
Q Consensus 112 ~~~~~~~~~~-~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~ 182 (360)
+.++.+.++. +. +++++++++++++||||.+++ +.+.++|+++|+++++|++++.+..+......+.++++
T Consensus 122 ~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~ 201 (404)
T PRK14012 122 TYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMS 201 (404)
T ss_pred EEEccCCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEE
Confidence 9888764432 21 468899999999999999998 77788888899999999999876554333455678999
Q ss_pred eccccccCCCCceEEEEeecCHHHHHHHHHH-H------hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 018172 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRF-I------ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERW 255 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~-~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (360)
+|++|.+| |+ ++|+++..+. ....+... . .....+.+.....+..+++..+. ..+++..++.++.+
T Consensus 202 ~s~~K~~g-p~-g~G~l~~~~~-~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~----~~~~~~~~~~~~l~ 274 (404)
T PRK14012 202 FSAHKIYG-PK-GIGALYVRRK-PRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAK----EEMATENERIRALR 274 (404)
T ss_pred EehhhccC-CC-ceEEEEEecC-CCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHH----hhHHHHHHHHHHHH
Confidence 99999888 43 5888887433 22222211 0 01122233444444445555332 34566778888889
Q ss_pred HHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCC--------------
Q 018172 256 NMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGA-------------- 321 (360)
Q Consensus 256 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~-------------- 321 (360)
+++.+.|++++++.+..+... ......++++...+.+.+...|+ ++.+..|..|..
T Consensus 275 ~~l~~~L~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~--~~~i~~g~~~~~~~~~~~~~~~~~~~ 344 (404)
T PRK14012 275 DRLWNGIKDIEEVYLNGDLEQ--------RVPGNLNVSFNYVEGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGL 344 (404)
T ss_pred HHHHHHHhcCCCEEEeCCccc--------cCCCEEEEEEeCcCHHHHHHhCC--CeEEEchhhhCCCCCCCCHHHHHcCC
Confidence 999999988765554321100 00111235555544445555553 677776654421
Q ss_pred ----CCCeEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 322 ----DAKYARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 322 ----~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
..+.+|+|+.. +++|+++++++|+++++..
T Consensus 345 ~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~ 380 (404)
T PRK14012 345 NDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKL 380 (404)
T ss_pred ChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 13689999976 8999999999999988654
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-23 Score=193.27 Aligned_cols=280 Identities=11% Similarity=0.015 Sum_probs=197.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC-
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG- 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~- 116 (360)
..++|+.+++++|. + ++++++|+++++..++..++++||+ |+++.++|.+....++..|++++.++.
T Consensus 65 ~~~l~~~lA~~~g~-------~-~~~~~~g~t~a~~~al~~l~~~gd~----Vlv~~~~h~s~~~~~~~~G~~~~~v~~~ 132 (387)
T PRK09331 65 IADFHEDLAEFLGM-------D-EARVTHGAREGKFAVMHSLCKKGDY----VVLDGLAHYTSYVAAERAGLNVREVPKT 132 (387)
T ss_pred HHHHHHHHHHHhCC-------C-cEEEeCCHHHHHHHHHHHhcCCCCE----EEECCCchHHHHHHHHHcCCEEEEEeCc
Confidence 49999999999995 3 5888999999999999999999998 999999999888888889999999887
Q ss_pred -Cccc-ccc---------C-----CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCcc
Q 018172 117 -DANT-FDK---------N-----NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHD 179 (360)
Q Consensus 117 -~~~~-~~~---------~-----~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~ 179 (360)
+.++ ++. . +++++|++++|+||||...+ +.+.++|+++|+++++|++|+.+..+......+.+
T Consensus 133 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D 212 (387)
T PRK09331 133 GYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGAD 212 (387)
T ss_pred cCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCC
Confidence 3221 111 1 36899999999999999988 67888888899999999999865544333455778
Q ss_pred EEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh--------ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 180 IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL--------GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 180 i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
+++.|++|+++ .+.++||+++ ++++++.+.+.... .+.+.+.....++.+.++.+. +..+ ..++.
T Consensus 213 ~~~~s~~K~l~-~~~~~G~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~----~~~~-~~~~~ 285 (387)
T PRK09331 213 FIVGSGHKSMA-ASAPSGVLAT-TEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVV----ERVK-RWDEE 285 (387)
T ss_pred EEEeeCccccc-CCCCEEEEEE-CHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHH----HHHH-HHHHH
Confidence 99999999998 5568999998 78888887554211 111122222233333343211 2232 33445
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-----------chHHHHHHHHhhCeeeeCCCCCC
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-----------EDEDCEKLLRAERIMARGGRRFG 320 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gI~~~pg~~f~ 320 (360)
.++.+++.+.|++++++.+..... +.++++.++.+ ....+.+.|+++||...+. +
T Consensus 286 ~~~~~~l~~~L~~l~g~~~~~~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~---~ 351 (387)
T PRK09331 286 VKKARWFVDELEKIEGFKQLGEKP-----------RNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKP---G 351 (387)
T ss_pred HHHHHHHHHHHhcCCCEEEeccCc-----------CcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEcc---C
Confidence 667778899999996666542111 11122222222 1145778888899984331 1
Q ss_pred CCCCeEEEEecC-ChHHHHHHHHHHHHHHhch
Q 018172 321 ADAKYARVSMLS-REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 321 ~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~ 351 (360)
....+|+.... +++++++++++|++++.+.
T Consensus 352 -~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~ 382 (387)
T PRK09331 352 -ATKEFKLSTYGLTWEQVEYVADAFKEIAEKY 382 (387)
T ss_pred -CceEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 24467776534 9999999999999997754
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=196.53 Aligned_cols=269 Identities=14% Similarity=0.106 Sum_probs=178.5
Q ss_pred CCcEEEcCChHHHHHHHHHhh----cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeee-------------ec-CCccc
Q 018172 59 GRHIVIGTGSTQLYQAALYAL----SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYK-------------WD-GDANT 120 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~l----~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~-------------~~-~~~~~ 120 (360)
.+++++++|+++++..+++.+ .++|++.+.+|+..++.|+.+...+...+..... ++ .|.+.
T Consensus 88 ~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 167 (389)
T PRK01278 88 ADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEA 167 (389)
T ss_pred CCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHH
Confidence 458999999999999998877 4567643345999999999987776655433211 11 12222
Q ss_pred ccc--CCCeeEEEEcCCCCCCc-ccch----HHHHHHhhhcCcEEEEeecccCCCCCc--CC-CCCCccEEEeccccccC
Q 018172 121 FDK--NNGAYIEVVNSPNNPDG-TIRE----AVLAKVNRSAEGKLIHDLAYYWPQYTP--IT-GAADHDIMLFTLSKCTG 190 (360)
Q Consensus 121 ~~~--~~~~~~i~~~~p~NPtG-~~~~----~~~~~~~~~~~~~li~D~ay~~~~~~~--~~-~~~~~~i~~~S~sK~~~ 190 (360)
++. ++++++|+++.++||+| ..++ +.+.++|+++|+++|+||+|.+..... .. ...+...-+.|+||.++
T Consensus 168 l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~ 247 (389)
T PRK01278 168 LKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIG 247 (389)
T ss_pred HHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEEehhcc
Confidence 222 34789999998888999 4555 466788999999999999998432111 11 11111112468999999
Q ss_pred CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCC-chhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 018172 191 HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDD-YPNFFEYGRRLMSERWNMLRQVIRQSGVFG 269 (360)
Q Consensus 191 ~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 269 (360)
+|+|+||+++ ++++++.+.......+++.|++.|.++.++++.+.+. +.+++.+..+.++++++.+ ...++.+
T Consensus 248 -~G~~ig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l---~~~~~~~- 321 (389)
T PRK01278 248 -GGFPLGACLA-TEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGL---VDRFPDV- 321 (389)
T ss_pred -CCcceEEEEE-cHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HhhCCCc-
Confidence 9999999998 7888888876666677789999999998888765332 1122333333333333322 2222211
Q ss_pred cCCCCCcccccccccCCCCCCcccccCCc-hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHH
Q 018172 270 LPEYPLEYCNFTGKFTNSHPGFAWLESKE-DEDCEKLLRAERIMARGGRRFGADAKYARVSML--SREEIFNIFLERLSA 346 (360)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~ 346 (360)
+. .+.+.+.++|+.+.. ...+.+.|.++||.+.|+. .+++||++. .+++++++++++|.+
T Consensus 322 ~~------------~v~g~G~~~~i~~~~~~~~~~~~l~~~GV~~~p~~-----~~~lR~~p~~~~~~~~i~~~l~~l~~ 384 (389)
T PRK01278 322 IE------------EVRGKGLLLGLKCVVPNRDLVQALRDEGLLTVGAG-----DNVVRLLPPLIITEEEIDEALERLER 384 (389)
T ss_pred ee------------eEecccEEEEEEEecCHHHHHHHHHHCCeEEeecC-----CCEEEEeCCcccCHHHHHHHHHHHHH
Confidence 00 112333466766643 3556666667799999863 579999864 489999999999999
Q ss_pred HHhc
Q 018172 347 IQGG 350 (360)
Q Consensus 347 ~~~~ 350 (360)
++.+
T Consensus 385 ~l~~ 388 (389)
T PRK01278 385 AAES 388 (389)
T ss_pred HHHh
Confidence 8753
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=189.95 Aligned_cols=252 Identities=13% Similarity=0.095 Sum_probs=179.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH----HHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET----DYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~~~~ 113 (360)
...|+++++++.+. +++++|+|+++++..++.+++++||+ |+++.|+|......+ ...|.+++.
T Consensus 55 ~~~Le~~lA~leg~--------e~ivvt~gg~~Ai~~~l~all~~Gd~----Il~~~~~y~~~~~~~~~~~~~~gi~v~~ 122 (388)
T PRK08861 55 RGLLEQTLSELESG--------KGAVVTNCGTSALNLWVSALLGPDDL----IVAPHDCYGGTYRLFNTRANKGDFKVQF 122 (388)
T ss_pred HHHHHHHHHHHhCC--------CeEEEECCHHHHHHHHHHHHcCCCCE----EEEcCCchHHHHHHHHHHHhcCCeEEEE
Confidence 48999999999983 48999999999999999999999998 999999999755433 234678777
Q ss_pred ecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++. |.+.+.. ++++++|++++||||||.+++ +.+.++|+++|+++|+|++|..+... .+-..+.+++++|++|.+
T Consensus 123 vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~-~pl~~GaDivv~S~tK~l 201 (388)
T PRK08861 123 VDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQ-KPLELGADFVIHSTTKYI 201 (388)
T ss_pred ECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccC-CCcccCCCEEEeecceec
Confidence 753 3344433 468999999999999999999 67778888899999999999864321 122456789999999988
Q ss_pred CC-CCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 GH-AGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~~-~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+- .+...|++++.++++.+.++..+...+...++.....+...++ . +.-..++..++...+.+.|+.+|.+
T Consensus 202 ~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~-------T-l~lR~~~~~~~a~~~a~~L~~~p~v 273 (388)
T PRK08861 202 NGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIR-------T-LGARMRVHEESAQQILAYLQTQSLV 273 (388)
T ss_pred cCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCC-------C-HHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 63 4567899888567788888877776677777877766655444 2 3333344466667888899999876
Q ss_pred ccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhhC
Q 018172 269 GLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAER 310 (360)
Q Consensus 269 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g 310 (360)
..+.+++.. +..+.....+.+..+.+.++++ +.+.+.+..-.
T Consensus 274 ~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~ 320 (388)
T PRK08861 274 GTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALA 320 (388)
T ss_pred eEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCC
Confidence 655444421 1111112234455677888643 44444443333
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-23 Score=191.77 Aligned_cols=288 Identities=16% Similarity=0.108 Sum_probs=198.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~ 113 (360)
..+|++.++++++. + +.++++++++++..++..++++||+ |+++.+.|...... +...|+++..
T Consensus 42 ~~~le~~la~l~g~-------~-~a~~~~sG~~Ai~~~l~~l~~~gd~----Vl~~~~~y~~~~~~~~~~~~~~g~~~~~ 109 (369)
T cd00614 42 VDALEKKLAALEGG-------E-AALAFSSGMAAISTVLLALLKAGDH----VVASDDLYGGTYRLFERLLPKLGIEVTF 109 (369)
T ss_pred HHHHHHHHHHHHCC-------C-CEEEEcCHHHHHHHHHHHHcCCCCE----EEECCCCcchHHHHHHHHHhhcCeEEEE
Confidence 48999999999984 3 4666777789999999999999998 99999999987654 4457888888
Q ss_pred ecCCc-ccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGDA-NTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~~-~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+. +.+.. ++++++|++.+|+||+|.+.+ +.+.++|+++|+++|+|++|..+... .+-..+.++++.|+||.+
T Consensus 110 v~~~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~-~~~~~g~Divv~S~tK~l 188 (369)
T cd00614 110 VDPDDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQ-RPLELGADIVVHSATKYI 188 (369)
T ss_pred eCCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcC-ChhhhCCcEEEeccceec
Confidence 87652 33332 457899999999999999998 77888889899999999999864331 112346789999999999
Q ss_pred CCCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 GHAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+.+| .+.||++++++++++.++..+...+.+.++..+.++...++ .+....++..++.+.+.+.|++++.+
T Consensus 189 ~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~--------tl~~r~~~~~~na~~la~~L~~~~~v 260 (369)
T cd00614 189 GGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLK--------TLPLRMERHSENALKVAEFLEKHPKV 260 (369)
T ss_pred cCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCC--------CHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 8655 78999998444888988877665566666666555433332 23445666788888999999998765
Q ss_pred ccCCCCCcc----cccccccCCCCCCcccccCC-chHHHHHHHHhhCeee---e----------CCC------------C
Q 018172 269 GLPEYPLEY----CNFTGKFTNSHPGFAWLESK-EDEDCEKLLRAERIMA---R----------GGR------------R 318 (360)
Q Consensus 269 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~---~----------pg~------------~ 318 (360)
..+.+++.. +........+.+..+.+.++ +.+.+.+.+.+-.+.. . |.. .
T Consensus 261 ~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~ 340 (369)
T cd00614 261 ERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAA 340 (369)
T ss_pred cEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCCCCceeeeCCcccccccCCHHHHHh
Confidence 543333210 00001111244567777776 3355555555555541 1 110 1
Q ss_pred CCCCCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 319 FGADAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 319 f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
.|..++.+|+|++. |+.+.+++.|.+.+
T Consensus 341 ~g~~~~liR~svGl--E~~~dl~~dl~~al 368 (369)
T cd00614 341 AGITPGLVRLSVGI--EDVEDLIADLEQAL 368 (369)
T ss_pred cCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence 12235689999977 34555666666654
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-23 Score=193.30 Aligned_cols=286 Identities=13% Similarity=0.088 Sum_probs=190.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~ 113 (360)
..+|++.+++++|. ++.+++++| ++++..++..++++||+ |+++.|.|......+.. .|+++..
T Consensus 63 ~~~Le~~lA~l~G~-------~~al~~~sG-~~Ai~~~l~al~~~Gd~----Vv~~~~~y~~~~~~~~~~~~~~gi~~~~ 130 (386)
T PRK06767 63 VKLFEERMAVLEGG-------EEALAFGSG-MAAISATLIGFLKAGDH----IICSNGLYGCTYGFLEVLEEKFMITHSF 130 (386)
T ss_pred hHHHHHHHHHHhCC-------CcEEEECCH-HHHHHHHHHHHhCCCCE----EEEcCCcHHHHHHHHHHHHhhcCeEEEE
Confidence 38999999999994 445555555 67899999999999998 99999999877666543 4666555
Q ss_pred ecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++. +.+.+.. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+... .+-..+.++++.|+||.+
T Consensus 131 ~~~~d~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~-~pl~~g~Div~~S~sK~l 209 (386)
T PRK06767 131 CDMETEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQ-RPLELGCDAVVHSATKYI 209 (386)
T ss_pred eCCCCHHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccC-CchhcCCcEEEecCccee
Confidence 543 2344433 467999999999999999988 67788888899999999999743211 112345689999999999
Q ss_pred CCCCceE-EEEeecCHHHHHHHH-HHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 190 GHAGSRI-GWALVKDTEVARKMT-RFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 190 ~~~G~r~-G~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
+.+|.++ ||+++ +.++++.+. ..+...+...+++.+.++...+ +.+....++.+++.+.+.+.|+++++
T Consensus 210 ~g~g~~~gG~v~~-~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L--------~tl~~r~~~~~~~a~~la~~L~~~p~ 280 (386)
T PRK06767 210 GGHGDVVAGVTIC-KTRALAEKIRPMRKDIGGIMAPFDAWLLLRGL--------KTLAVRMDRHCDNAEKIVSFLKNHDA 280 (386)
T ss_pred cCCCCceeEEEEe-ChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCC--------CcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8888885 88888 677666653 3333333445555444433322 23345556778889999999999987
Q ss_pred cccCCCCCcccccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeCCCCC----------------------CC
Q 018172 268 FGLPEYPLEYCNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARGGRRF----------------------GA 321 (360)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~pg~~f----------------------~~ 321 (360)
+....++. +..........+..+.+.+++. ..+.+.|+..++.+.-|... |.
T Consensus 281 v~~v~~p~--~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi 358 (386)
T PRK06767 281 VEGVWYPE--GELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGI 358 (386)
T ss_pred ccEEECCC--cHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcCC
Confidence 77544331 1111111123345666776532 55667777667666555211 12
Q ss_pred CCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 322 DAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 322 ~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
.++.+|||++.+ +.+.+++-|.+.+.
T Consensus 359 ~~~l~R~svGlE--~~~dl~~dl~~al~ 384 (386)
T PRK06767 359 YDNLIRLSVGLE--SWEDIVSDLEQALK 384 (386)
T ss_pred CCCeEEEEeccC--CHHHHHHHHHHHHh
Confidence 356899999662 24445555555543
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-24 Score=188.02 Aligned_cols=300 Identities=17% Similarity=0.172 Sum_probs=211.8
Q ss_pred eecCCcccccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcE--EEcCChHHHHHHHHHhhc--CCCCCCCceEEE
Q 018172 17 VISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHI--VIGTGSTQLYQAALYALS--SPGGPEPISVVS 92 (360)
Q Consensus 17 ~~~~~~~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i--~~t~G~t~~l~~~~~~l~--~~gd~~~~~vl~ 92 (360)
.+...+....|-+..|. +++++++++++--.+.+.-.+++| +-|.|+|.||......+- .+..+ |++
T Consensus 55 ~l~~~~~~k~Yl~i~G~-----~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~----vwi 125 (396)
T COG1448 55 RLLEQEKTKNYLPIEGL-----PEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDAT----VWI 125 (396)
T ss_pred HhhccccccccCCcCCc-----HHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCce----EEe
Confidence 33444445568899998 999999999743222222233333 467999999999988773 34444 999
Q ss_pred eCCCCCCcHHHHHHhCCeeeeecC--------Ccccccc----C-CCeeEEEEcCCCCCCcccchH----HHHHHhhhcC
Q 018172 93 AAPYYSQYPAETDYLRSGLYKWDG--------DANTFDK----N-NGAYIEVVNSPNNPDGTIREA----VLAKVNRSAE 155 (360)
Q Consensus 93 ~~p~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~----~-~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~ 155 (360)
++|+|+++..+++..|.++...+- |.+++.. - ++..+++..+.|||||.-+++ .+.++-++++
T Consensus 126 s~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~ 205 (396)
T COG1448 126 SDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERG 205 (396)
T ss_pred CCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999987762 2222221 1 334445556779999999882 4455555699
Q ss_pred cEEEEeecccCCC--CCc-------CCCCCCccEEEeccccccCCCCceEEEEe--ecCHHHHHH----HHHHHhhcccc
Q 018172 156 GKLIHDLAYYWPQ--YTP-------ITGAADHDIMLFTLSKCTGHAGSRIGWAL--VKDTEVARK----MTRFIELGSIG 220 (360)
Q Consensus 156 ~~li~D~ay~~~~--~~~-------~~~~~~~~i~~~S~sK~~~~~G~r~G~~~--~~~~~~~~~----l~~~~~~~~~~ 220 (360)
.+.+.|-||.+.. +.. +.....-.++..||||.||+.|.|+|.+. +.+.+.++. +....+..-++
T Consensus 206 lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySn 285 (396)
T COG1448 206 LIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSN 285 (396)
T ss_pred CeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999532 111 11222337889999999999999999743 345544444 44555555667
Q ss_pred CChHHHHHHHHHhcc--cCCCchhHHHHHHHHHHHHHHHHHHHHHhcC---CcccCCCCCcccccccccCCCCCCccccc
Q 018172 221 VSKESQLRAAKILGI--VSDDYPNFFEYGRRLMSERWNMLRQVIRQSG---VFGLPEYPLEYCNFTGKFTNSHPGFAWLE 295 (360)
Q Consensus 221 ~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (360)
++..+....+.+|+. +...|...++.+++++.++|..+.+.|+... .+..... -.|+|....
T Consensus 286 PP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~-------------Q~GMFsy~G 352 (396)
T COG1448 286 PPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIIS-------------QRGMFSYTG 352 (396)
T ss_pred CchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhh-------------cCceeecCC
Confidence 777888888888873 2234678899999999999999999999852 1222222 333454554
Q ss_pred CCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHH
Q 018172 296 SKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQ 348 (360)
Q Consensus 296 ~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~ 348 (360)
+. .+.+.++..++||++.- .+ |+|++. ++..++.+.++|.+++
T Consensus 353 ls-~~QV~rLree~~IY~v~-------sG--Ri~vaGl~~~ni~~va~ai~~v~ 396 (396)
T COG1448 353 LS-PEQVDRLREEFGIYLVA-------SG--RINVAGLNTSNIDYVAKAIAAVL 396 (396)
T ss_pred CC-HHHHHHHHHhccEEEec-------CC--eeeeccCChhhHHHHHHHHHhhC
Confidence 43 38888888899999874 22 999988 9999999999998763
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=190.64 Aligned_cols=295 Identities=12% Similarity=0.073 Sum_probs=204.3
Q ss_pred ccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY 106 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~ 106 (360)
|+...+. .+|+++++++++. ++.+++++|.++.. .++..++++||+ |+++++.|.++...+..
T Consensus 39 yg~~~~~-----~~LE~~lA~~~g~-------e~al~~~sG~~a~~-~~i~~l~~~GD~----Vl~~~~~h~s~~~~~~l 101 (392)
T PLN03227 39 YGTIDAH-----LELEQCMAEFLGT-------ESAILYSDGASTTS-STVAAFAKRGDL----LVVDRGVNEALLVGVSL 101 (392)
T ss_pred cCChHHH-----HHHHHHHHHHhCC-------CcEEEecCcHHHHH-HHHHHhCCCCCE----EEEeccccHHHHHHHHH
Confidence 6655555 9999999999995 46788888877776 777778999998 99999999999888888
Q ss_pred hCCeeeeecCC-cccccc----------------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC
Q 018172 107 LRSGLYKWDGD-ANTFDK----------------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 107 ~g~~~~~~~~~-~~~~~~----------------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
.+.+++.++.. .+.++. .+++++|++.+++||+|.+.+ +.+.++|+++|+++|+||+|..+.
T Consensus 102 ~~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~ 181 (392)
T PLN03227 102 SRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGT 181 (392)
T ss_pred cCCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccc
Confidence 88887766532 222111 236889999999999999998 678899999999999999998322
Q ss_pred CC----c------CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCC--hHHHHHHHHHhccc
Q 018172 169 YT----P------ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVS--KESQLRAAKILGIV 236 (360)
Q Consensus 169 ~~----~------~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~ 236 (360)
.. . +....+.++++.|+||.++..| |++++ +.++++.+........++.+ +..+.++.+++...
T Consensus 182 ~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~g---g~v~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~ 257 (392)
T PLN03227 182 LGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVG---GMTVG-SEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGE 257 (392)
T ss_pred cCCCCCcHHHHcCCCCCCCceEEEeechhhhhccC---cEEec-CHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHH
Confidence 11 1 1112456899999999877454 88887 78888877654433344443 55666666555422
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch------------HHHHH
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED------------EDCEK 304 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 304 (360)
.. .++.+++++++.+++.+.|++.+...+....+... ....+.++++.+.+.+. ..+.+
T Consensus 258 ~~-----~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~----~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 328 (392)
T PLN03227 258 LA-----GPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLV----ITSDPISPIIYLRLSDQEATRRTDETLILDQIAH 328 (392)
T ss_pred hc-----CHHHHHHHHHHHHHHHHHHHhcCCccccccccccc----cCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHH
Confidence 11 24567778888888888887532111111122110 01123344555555432 26777
Q ss_pred HHHhhCeeeeCCC-C----C-CCCCCeEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 305 LLRAERIMARGGR-R----F-GADAKYARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 305 ~l~~~gI~~~pg~-~----f-~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
.+.++|+.+.+.. . + -.++..+|+++.. ++|++++++++|++++.+.
T Consensus 329 ~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~ 383 (392)
T PLN03227 329 HSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAI 383 (392)
T ss_pred HHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 8889999987521 1 1 1135689999976 9999999999999998654
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=198.86 Aligned_cols=261 Identities=15% Similarity=0.111 Sum_probs=185.5
Q ss_pred CcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHh-C------------CeeeeecC-Ccccccc--
Q 018172 60 RHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYL-R------------SGLYKWDG-DANTFDK-- 123 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~-g------------~~~~~~~~-~~~~~~~-- 123 (360)
+++++++|+++++..+++.+..+|+. +++..+++|..+...+... | .++..++. |.+.++.
T Consensus 104 ~~v~~~~sgsea~~~al~~~~~~g~~---~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 180 (398)
T PRK03244 104 GRVFFCNSGAEANEAAFKLARLTGRT---KIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAV 180 (398)
T ss_pred CEEEEeCchHHHHHHHHHHHHHHCCC---eEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhh
Confidence 58999999999999999987666643 3888888998775443322 2 12233331 3333332
Q ss_pred CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCc--C--C-CCCCccEEEeccccccCCCC
Q 018172 124 NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTP--I--T-GAADHDIMLFTLSKCTGHAG 193 (360)
Q Consensus 124 ~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~--~--~-~~~~~~i~~~S~sK~~~~~G 193 (360)
.+++++|++..++||||.+++ +.+.++|+++|+++|+||+|.+..... . . .....+ +.+|||.++ +|
T Consensus 181 ~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pD--i~t~sK~l~-~G 257 (398)
T PRK03244 181 DDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPD--VVTLAKGLG-GG 257 (398)
T ss_pred cCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCC--EEEEchhhh-CC
Confidence 357889999999999999987 366789999999999999997421111 1 0 111122 348899999 99
Q ss_pred ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q 018172 194 SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEY 273 (360)
Q Consensus 194 ~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 273 (360)
+|+||+++ ++++++.+.......+++.|++.+.++.+.++.+.+. +..++++++.+++.+.|++++. ....
T Consensus 258 ~~ig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~------~~~~~~~~~~~~l~~~L~~~~~-~~~~- 328 (398)
T PRK03244 258 LPIGACLA-FGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASE------GLLENAERLGEQLRAGIEALGH-PLVD- 328 (398)
T ss_pred cccEEEEE-cHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHhcCC-Ccee-
Confidence 99999999 7888888865444567789999999999988754322 3456666777888888887531 1100
Q ss_pred CCcccccccccCCCCCCcccccCCch--HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC--ChHHHHHHHHHHHHHHh
Q 018172 274 PLEYCNFTGKFTNSHPGFAWLESKED--EDCEKLLRAERIMARGGRRFGADAKYARVSMLS--REEIFNIFLERLSAIQG 349 (360)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~ 349 (360)
.+.+.++++|+.++.. ..+.+.|.++||.+.+. ..+.+||++.. +++++++++++|.+++.
T Consensus 329 ----------~v~g~g~~~~i~~~~~~~~~~~~~l~~~Gv~~~~~-----~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~ 393 (398)
T PRK03244 329 ----------HVRGRGLLLGIVLTAPVAKAVEAAAREAGFLVNAV-----APDVIRLAPPLIITDAQVDAFVAALPAILD 393 (398)
T ss_pred ----------eEeeccEEEEEEEeccHHHHHHHHHHHCCeEEeec-----CCCEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence 1123455788887542 66778888999999873 14689999654 89999999999999997
Q ss_pred c
Q 018172 350 G 350 (360)
Q Consensus 350 ~ 350 (360)
+
T Consensus 394 ~ 394 (398)
T PRK03244 394 A 394 (398)
T ss_pred h
Confidence 5
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=190.07 Aligned_cols=287 Identities=15% Similarity=0.097 Sum_probs=192.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~ 113 (360)
..+||++++++++. + ..++++ ++++++..++..++++||+ |+++.|+|......+.. .|++++.
T Consensus 63 ~~~Le~~lA~~~g~------~-~~i~~~-sG~~Ai~~~l~all~~Gd~----Vl~~~~~y~~t~~~~~~~~~~~gi~~~~ 130 (388)
T PRK07811 63 RTALEEQLAALEGG------A-YGRAFS-SGMAATDCLLRAVLRPGDH----IVIPNDAYGGTFRLIDKVFTRWGVEYTP 130 (388)
T ss_pred HHHHHHHHHHHhCC------C-ceEEeC-CHHHHHHHHHHHHhCCCCE----EEEcCCCchHHHHHHHHhCcCCCeEEEE
Confidence 48999999999985 3 345555 5589999999999999998 99999999976554433 5888777
Q ss_pred ecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++. |.+.+.. ++++++|++++|+||||...+ +.+.++|+++|+++|+|++|..+... .+...+.+++++|++|.+
T Consensus 131 ~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~-~p~~~gaDivv~S~sK~l 209 (388)
T PRK07811 131 VDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQ-QPLALGADVVVHSTTKYI 209 (388)
T ss_pred eCCCCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccC-CchhhCCcEEEecCceee
Confidence 764 3344443 468999999999999999887 67788888899999999999854321 112345679999999999
Q ss_pred CCCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 GHAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+.+| .+.||++++++++.+.+...+...+...++.....+...++ .+....++.+++.+.+.+.|++++.+
T Consensus 210 ~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~--------tl~~R~~~~~~na~~la~~L~~~p~v 281 (388)
T PRK07811 210 GGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLK--------TLAVRMDRHSENAEAVAEFLAGHPEV 281 (388)
T ss_pred cCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccC--------cHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 8644 56799988678888888766655455555554433333332 24455555677888999999999876
Q ss_pred ccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCC-----------------------C
Q 018172 269 GLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRF-----------------------G 320 (360)
Q Consensus 269 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f-----------------------~ 320 (360)
..+.+++.. +........+.+..+.+.+++. +.+.+.+.+-.+. ..|..+ |
T Consensus 282 ~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~-~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g 360 (388)
T PRK07811 282 STVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTKVF-TLAESLGGVESLIEHPSAMTHASTAGSQLE 360 (388)
T ss_pred eEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhCCcc-eeeccCCCCcceEeCCcccCcccCCHhhcC
Confidence 654444321 1111111234556778888643 4444444443432 112112 2
Q ss_pred CCCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 321 ADAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 321 ~~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
..++.+|||++.+ +.+.+++.|.+.+
T Consensus 361 i~~~liR~svGlE--~~~dl~~dl~~al 386 (388)
T PRK07811 361 VPDDLVRLSVGIE--DVADLLADLEQAL 386 (388)
T ss_pred CCCCEEEEEeCCC--CHHHHHHHHHHHh
Confidence 2356899999762 2344455555544
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-23 Score=197.03 Aligned_cols=276 Identities=17% Similarity=0.158 Sum_probs=193.2
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc-CCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeeeecCC
Q 018172 43 EAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS-SPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYKWDGD 117 (360)
Q Consensus 43 ~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~-~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~~~~~ 117 (360)
+.+++++|. +.+++++|+|+++++..++.++. ++|++ |+++++.|+++...++. .|++++.++.+
T Consensus 119 ~~la~l~g~------~~~~v~~~~g~t~~~~~~~~a~~~~~g~~----Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~ 188 (447)
T PRK00451 119 TMICELTGM------DVANASMYDGATALAEAALMAVRITKRKK----VLVSGAVHPEYREVLKTYLKGQGIEVVEVPYE 188 (447)
T ss_pred HHHHHHhCC------CcceEEecCcHHHHHHHHHHHHHhcCCCE----EEEeCccCHHHHHHHHHHHHhCCcEEEEecCC
Confidence 444556654 44589999999999999888874 78887 99999999999887765 58999999876
Q ss_pred cccccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEE--eecccCCCCCcCCCCCCccEEEe---c
Q 018172 118 ANTFDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIH--DLAYYWPQYTPITGAADHDIMLF---T 184 (360)
Q Consensus 118 ~~~~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~--D~ay~~~~~~~~~~~~~~~i~~~---S 184 (360)
.+.++. ++++++|++++| ||||.+.+ +.+.++|+++|+++++ |.+. .+ ........+.+++++ +
T Consensus 189 ~~~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~~-~g-~~~~~~~~~~D~~~~s~~k 265 (447)
T PRK00451 189 DGVTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVS-LG-LLKPPGEYGADIVVGEGQP 265 (447)
T ss_pred CCCCCHHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChHH-hc-cCCCcccCCCCEEEECCCc
Confidence 432211 468999999999 89999988 7788889989999988 4432 11 122235677788877 6
Q ss_pred cccccCCCCceEEEEeecCHHHHHHH----------------------------HHHHhhccccCChHHH-HHHHHHhcc
Q 018172 185 LSKCTGHAGSRIGWALVKDTEVARKM----------------------------TRFIELGSIGVSKESQ-LRAAKILGI 235 (360)
Q Consensus 185 ~sK~~~~~G~r~G~~~~~~~~~~~~l----------------------------~~~~~~~~~~~~~~~~-~~~~~~l~~ 235 (360)
|||.+.+.|+++||+++ ++++++.+ +..+.....+.+...| .+++..++.
T Consensus 266 ~~~~~~~~Gpg~G~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~ 344 (447)
T PRK00451 266 LGIPLSFGGPYLGFFAT-RKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSL 344 (447)
T ss_pred CCCCCCCCCCCchHHHh-hHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 67777788999999988 67877764 1111111222222333 333333443
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-chHHHHHHHHhhCeee-
Q 018172 236 VSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-EDEDCEKLLRAERIMA- 313 (360)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~- 313 (360)
+. +..+++.++++.++++++.+.|++++++.+. .+.++. ++.++++ +..++.+.|.++||..
T Consensus 345 ~~---~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~-----------~~~v~~~~~~~~~~~~L~~~gi~~~ 408 (447)
T PRK00451 345 LG---PEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFN-----------EFVVRLPKPAEEVNEALLEKGILGG 408 (447)
T ss_pred HC---HHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEE-----------EEEEecCCCHHHHHHHHHhcCCCCC
Confidence 32 2778999999999999999999998766653 222211 1224433 3367777888888873
Q ss_pred eCCCCCCC-CCCeEEEEec--CChHHHHHHHHHHHHHH
Q 018172 314 RGGRRFGA-DAKYARVSML--SREEIFNIFLERLSAIQ 348 (360)
Q Consensus 314 ~pg~~f~~-~~~~~R~s~~--~~~e~~~~~~~~l~~~~ 348 (360)
.++..|+. ..+++|+|+. .++|++++++++|++++
T Consensus 409 ~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 409 YDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred cccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 45555542 2468999985 49999999999999875
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=189.64 Aligned_cols=252 Identities=13% Similarity=0.103 Sum_probs=176.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHH---HhCCeeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETD---YLRSGLYKW 114 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~---~~g~~~~~~ 114 (360)
..+|++.++++++. + ++++++|+++++..++..++++||+ |+++.|+|..+...++ ..|+++..+
T Consensus 55 ~~~lE~~lA~l~g~-------~-~~l~~~sG~~Ai~~~l~~ll~~GD~----Vlv~~~~y~~~~~~~~~~~~~g~~v~~~ 122 (385)
T PRK08574 55 LRPLEEALAKLEGG-------V-DALAFNSGMAAISTLFFSLLKAGDR----VVLPMEAYGTTLRLLKSLEKFGVKVVLA 122 (385)
T ss_pred HHHHHHHHHHHhCC-------C-cEEEeCCHHHHHHHHHHHHhCCCCE----EEEcCCCchhHHHHHHHhhccCcEEEEE
Confidence 49999999999984 3 5778888899999999999999998 9999999999877764 458888877
Q ss_pred cCCcccccc--CC-CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-CCcCCCCCCccEEEecccccc
Q 018172 115 DGDANTFDK--NN-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ-YTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 115 ~~~~~~~~~--~~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~-~~~~~~~~~~~i~~~S~sK~~ 189 (360)
..+.+.+.. ++ ++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+. ..++ ..+.+++++|+||.+
T Consensus 123 ~~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l--~~GaDivv~S~sK~l 200 (385)
T PRK08574 123 YPSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPL--RHGADFVVHSLTKYI 200 (385)
T ss_pred CCCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChh--hhCCcEEEeeCceee
Confidence 766555543 34 7999999999999999998 677788888999999999997542 2222 356789999999999
Q ss_pred CCCCce-EEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 GHAGSR-IGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~~~G~r-~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+.+|-. .|++++.++++.+.++..+...+...+++....+...++ .+....++..++...+.+.|++++.+
T Consensus 201 ~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~--------tL~~R~~~~~~na~~la~~L~~~p~v 272 (385)
T PRK08574 201 AGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLK--------TLEVRFERQCRNAMAIAEFLSEHPKV 272 (385)
T ss_pred cCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccC--------cHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 756654 465666678888888877665555555554433333232 23334444455778888899988766
Q ss_pred ccCCCCCcc----cccccccC--CCCCCcccccCCch-HHHHHHHHhhCe
Q 018172 269 GLPEYPLEY----CNFTGKFT--NSHPGFAWLESKED-EDCEKLLRAERI 311 (360)
Q Consensus 269 ~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~gI 311 (360)
..+.+++.. +....... .+.+..+.++++++ +.+.+.+.+-.+
T Consensus 273 ~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~l~l 322 (385)
T PRK08574 273 AEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGRDAVLKFLRSLKL 322 (385)
T ss_pred CEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCHHHHHHHHHcCCc
Confidence 654444321 11111111 13455678888643 444444444343
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=190.20 Aligned_cols=287 Identities=16% Similarity=0.125 Sum_probs=190.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH----HHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA----ETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~----~~~~~g~~~~~ 113 (360)
..+|++++++++|. + ..++++++++++..++..++++||+ |+++.|.|..... .+...|++++.
T Consensus 61 ~~~le~~lA~l~g~-------~-~av~~~sG~~Ai~~~l~al~~~Gd~----Vi~~~~~y~~t~~~~~~~~~~~G~~~~~ 128 (391)
T TIGR01328 61 VSNLEGRIAFLEGT-------E-AAVATSSGMGAIAATLLTILKAGDH----LISDECLYGCTFALLEHALTKFGIQVDF 128 (391)
T ss_pred HHHHHHHHHHHhCC-------C-cEEEECCHHHHHHHHHHHHhCCCCE----EEEecCcchHHHHHHHHHHhcCCeEEEE
Confidence 48899999999995 3 3566777788999999999999998 9999998876543 34557999888
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++++ .+.+.. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+.. ..+-..+.+++++|+||.+
T Consensus 129 vd~~d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~-~~~~~~g~Divv~S~sK~l 207 (391)
T TIGR01328 129 INMAIPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPML-TNPVALGVDVVVHSATKYI 207 (391)
T ss_pred ECCCCHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhcc-CCchhcCCCEEEccccccc
Confidence 8765 333433 467999999999999999988 6778888889999999999985422 1122346779999999999
Q ss_pred CCCCceE-EEEeecCHHHHHHHHHHHh--hccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 190 GHAGSRI-GWALVKDTEVARKMTRFIE--LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 190 ~~~G~r~-G~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
+.+|.++ |++++ ++++++.++.... ..+...++.....+...+ +.+....++..++.+.+.+.|++++
T Consensus 208 gg~g~~~gG~v~~-~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L--------~tl~~r~~~~~~na~~la~~L~~~p 278 (391)
T TIGR01328 208 GGHGDVVAGLICG-KAELLQQIRMVGIKDMTGSVISPFDAWLILRGL--------KTLNIRMKRHSENAMKVAEYLKSHP 278 (391)
T ss_pred cCCCCceEEEEEc-CHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCc--------CcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9888775 56665 8898888875432 223334444444333322 2234446667778888999999988
Q ss_pred CcccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCC----------------------
Q 018172 267 VFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRF---------------------- 319 (360)
Q Consensus 267 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f---------------------- 319 (360)
.+..+.+++.. +........+.+..+.+.++++ +.+.+.+.+-.+. ..+..+
T Consensus 279 ~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~l~~~-~~~~s~G~~~sl~~~~~~~~~~~~~~~~ 357 (391)
T TIGR01328 279 AVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNLKLI-RLAVSLGDAETLIQHPASMTHAVVPKEE 357 (391)
T ss_pred CccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHhCCcc-eEecCCCCCcccCcCCCccccccCCHHH
Confidence 76655444321 1111111233455677887643 4444444333332 112112
Q ss_pred ----CCCCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 320 ----GADAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 320 ----~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
|..++.+|||++.+ +.+.+++.|.+.++
T Consensus 358 ~~~~gi~~~liR~svGlE--~~~dl~~dl~~al~ 389 (391)
T TIGR01328 358 REAAGITDGMIRLSVGLE--DADDLIADLKQALD 389 (391)
T ss_pred HHhcCCCCCeEEEEeCcC--CHHHHHHHHHHHHh
Confidence 11246799999662 24455555555554
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=189.42 Aligned_cols=215 Identities=12% Similarity=0.054 Sum_probs=162.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH----HHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA----ETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~----~~~~~g~~~~~ 113 (360)
..+|++.++++++. +++++++|+++++..++.+++++||+ |+++.|+|..+.. .+...|++++.
T Consensus 67 ~~~Le~~lA~l~g~--------~~~l~~~sgt~Ai~~~l~al~~~GD~----Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~ 134 (394)
T PRK07050 67 SLALAQRLAEIEGG--------RHALLQPSGLAAISLVYFGLVKAGDD----VLIPDNAYGPNRDHGEWLARDFGITVRF 134 (394)
T ss_pred HHHHHHHHHHHhCC--------CeEEEeccHHHHHHHHHHHHhCCCCE----EEEecCCcccHHHHHHHHHHhcCeEEEE
Confidence 48999999999984 37999999999999999999999999 9999999998774 45667999988
Q ss_pred ecCCc-ccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGDA-NTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~~-~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++... +.+.. .+++|+|++++|+||+|...+ +.+.++|+++|+++|+|++|..+.. .-+...+.++++.|++|.+
T Consensus 135 vd~~~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~-~~~l~~GaDi~v~S~tK~~ 213 (394)
T PRK07050 135 YDPLIGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLA-FKPFEHGVDISVQALTKYQ 213 (394)
T ss_pred ECCCCHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccc-cCHHHcCCeEEEEECCcee
Confidence 86532 23332 578999999999999998877 6778888889999999999986432 1112345689999999988
Q ss_pred C-CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 G-HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~-~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+ ..+.+.|++++.++++.+.++..+...+.+.++.....+...++ .... ..++..++...+.+.|.+++.+
T Consensus 214 ~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~-------tl~~-Rl~~~~~~a~~la~~L~~~p~v 285 (394)
T PRK07050 214 SGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLP-------SLQV-RLAAHDRSALEVAEWLKARPEI 285 (394)
T ss_pred cCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCC-------cHHH-HHHHHHHHHHHHHHHHHhCCCc
Confidence 6 34456898888788899999887776667777766655544333 3333 3344445555788888888766
Q ss_pred ccCCC
Q 018172 269 GLPEY 273 (360)
Q Consensus 269 ~~~~~ 273 (360)
....+
T Consensus 286 ~~v~~ 290 (394)
T PRK07050 286 ATVLH 290 (394)
T ss_pred cEEEC
Confidence 55443
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=188.05 Aligned_cols=287 Identities=16% Similarity=0.125 Sum_probs=196.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH----HHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP----AETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~----~~~~~~g~~~~~ 113 (360)
..+|++++++++|. + +.+++++| +.++..++. ++++||+ |+++.|.|+... ..++..|++++.
T Consensus 56 ~~~le~~lA~l~g~------~-~~v~~~sG-~~ai~~~l~-~l~~Gd~----Vlv~~~~y~~~~~~~~~~~~~~G~~v~~ 122 (390)
T PRK08064 56 REALEDIIAELEGG------T-KGFAFASG-MAAISTAFL-LLSKGDH----VLISEDVYGGTYRMITEVLSRFGIEHTF 122 (390)
T ss_pred HHHHHHHHHHHhCC------C-CeEEECCH-HHHHHHHHH-HhCCCCE----EEEccCccchHHHHHHHHHHHcCCEEEE
Confidence 48999999999985 3 46776666 667877775 7788998 999999998654 345567999998
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+... .+...+.++++.|+||.+
T Consensus 123 v~~~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~-~~~~~g~Divv~S~tK~~ 201 (390)
T PRK08064 123 VDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQ-KPLDLGADVVLHSATKFL 201 (390)
T ss_pred ECCCCHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCccccc-CchhhCCcEEEeecceec
Confidence 8764 344433 468999999999999999988 67788888899999999999864321 112456789999999997
Q ss_pred C-CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 G-HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~-~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+ .+|...|++++.++++++.++..+..++...++.....+ +..+ +.+....++..++...+.+.|++++.+
T Consensus 202 ~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~---~~gl-----~tl~~R~~~~~~~a~~la~~L~~~~~v 273 (390)
T PRK08064 202 AGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLV---LRGL-----KTLHVRLEHSSETANKIALYLQEHPKV 273 (390)
T ss_pred cCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHH---Hccc-----CcHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5 445567877776788999998887655555554444432 2221 345566666688888889999988755
Q ss_pred ccCCCCCcc----cccccccCCCCCCcccccCCchHHHHHHHHhhCe---eeeCCCC----------------------C
Q 018172 269 GLPEYPLEY----CNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERI---MARGGRR----------------------F 319 (360)
Q Consensus 269 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI---~~~pg~~----------------------f 319 (360)
....+++-. +.+......+.+..+.+.+++.+.+.+.+.+.++ .+.-|.. .
T Consensus 274 ~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~ 353 (390)
T PRK08064 274 QNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDER 353 (390)
T ss_pred ceEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCCcceEcccCCCCcceeECCcccccccCCHHHHHhc
Confidence 433333211 1111112234455677777655667777777777 3333310 1
Q ss_pred CCCCCeEEEEecC--ChHHHHHHHHHHHH
Q 018172 320 GADAKYARVSMLS--REEIFNIFLERLSA 346 (360)
Q Consensus 320 ~~~~~~~R~s~~~--~~e~~~~~~~~l~~ 346 (360)
|..++.+|+|++. .++.++.+.++|++
T Consensus 354 gi~~~liR~SvGle~~~dli~dl~~Al~~ 382 (390)
T PRK08064 354 GITDGLLRLSVGLENVDDLIADFEQALSY 382 (390)
T ss_pred CCCCCeEEEEeccCCHHHHHHHHHHHHHh
Confidence 1235789999977 45556666666655
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=190.44 Aligned_cols=278 Identities=15% Similarity=0.128 Sum_probs=192.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC--CCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeec
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS--PGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWD 115 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~--~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~ 115 (360)
..+|++.++++++. ++.+++++| ++++..++..+.. +++. |+.....|.+....+...|.++..++
T Consensus 93 ~~~l~~~la~~~g~-------~~~~~~~sG-~~an~~ai~~l~~~~~~~~----i~~~~~~h~s~~~~~~~~~~~~~~~~ 160 (407)
T PRK09064 93 HVELERELADLHGK-------EAALVFTSG-YVSNDATLSTLAKLIPDCV----IFSDELNHASMIEGIRRSRCEKHIFR 160 (407)
T ss_pred HHHHHHHHHHHhCC-------CcEEEECcH-HHHHHHHHHHHhCCCCCCE----EEEeCcchHHHHHHHHHcCCcEEEEC
Confidence 37788888888773 445666665 5676667776654 5553 55555667766677777788877776
Q ss_pred C-Ccccc---cc---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC----cC---CCC-CCcc
Q 018172 116 G-DANTF---DK---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT----PI---TGA-ADHD 179 (360)
Q Consensus 116 ~-~~~~~---~~---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~----~~---~~~-~~~~ 179 (360)
. |.+.+ .. .+++++|++++|+||+|.+.+ +.+.++|+++|+++|+||+|..+.+. .. .+. .+.+
T Consensus 161 ~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~d 240 (407)
T PRK09064 161 HNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRID 240 (407)
T ss_pred CCCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCe
Confidence 4 22222 11 146899999999999999988 77888899999999999999732111 11 111 2347
Q ss_pred EEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc--cccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH
Q 018172 180 IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG--SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNM 257 (360)
Q Consensus 180 i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (360)
++++||||+||++| ||+++ ++++++.+....... +.+.++..+.++.+.++.+.. ....++++++++++
T Consensus 241 iv~~t~sKa~g~~G---G~~~~-~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~-----~~~~~~~~~~~~~~ 311 (407)
T PRK09064 241 IIEGTLAKAFGVMG---GYIAG-SAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKE-----SNEERERHQERAAK 311 (407)
T ss_pred EEEEecchhhhccC---ceEec-CHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHH
Confidence 88999999999888 99988 889999887654322 335666777777777765432 13446788899999
Q ss_pred HHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHH-HhhCeeeeCCCCCCC--CCCeEEEEec
Q 018172 258 LRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLL-RAERIMARGGRRFGA--DAKYARVSML 331 (360)
Q Consensus 258 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l-~~~gI~~~pg~~f~~--~~~~~R~s~~ 331 (360)
+.+.|++.+ +.+..+ .++++++.+++. ..+.+.| .++||.+++...... +.+++|+++.
T Consensus 312 l~~~L~~~g-~~~~~~--------------~~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~ 376 (407)
T PRK09064 312 LKAALDAAG-IPVMPN--------------ESHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPT 376 (407)
T ss_pred HHHHHHHcC-CCCCCC--------------CCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeC
Confidence 999999874 333222 233555655542 4555555 456999998654332 2368999985
Q ss_pred C--ChHHHHHHHHHHHHHHhch
Q 018172 332 S--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 332 ~--~~e~~~~~~~~l~~~~~~~ 351 (360)
. +++++++++++|++++.+.
T Consensus 377 ~~~t~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 377 PFHTDEMIDHLVEALVEVWARL 398 (407)
T ss_pred CCCCHHHHHHHHHHHHHHHHHc
Confidence 4 9999999999999998653
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=188.29 Aligned_cols=283 Identities=16% Similarity=0.081 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCC-----------CCceEEEeCCCCCCc----HHH
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGP-----------EPISVVSAAPYYSQY----PAE 103 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~-----------~~~~vl~~~p~~~~~----~~~ 103 (360)
.++++.+++++|. +++++|+|+|+++++++.+++++||+ ++..|+++.|.|..+ ..+
T Consensus 48 ~~~~~~~a~~~g~--------~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~ 119 (363)
T TIGR01437 48 NKTGEYIANLLGV--------EDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETM 119 (363)
T ss_pred HHHHHHHHHhhCC--------CeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHH
Confidence 5666666666663 36899999999999999999999981 011299999888766 567
Q ss_pred HHHhCCeeeeecCC----cccccc--CCCeeEEE-EcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCC
Q 018172 104 TDYLRSGLYKWDGD----ANTFDK--NNGAYIEV-VNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGA 175 (360)
Q Consensus 104 ~~~~g~~~~~~~~~----~~~~~~--~~~~~~i~-~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~ 175 (360)
+...|++++.++.+ .+.++. +++|++++ +++|+||+|...+ +++.++|+++|+++|+|++|... .. ....
T Consensus 120 ~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~-~~-~~~~ 197 (363)
T TIGR01437 120 VRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEED-LQ-KYYR 197 (363)
T ss_pred HHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCc-hH-HHHH
Confidence 78889999988643 233332 46788765 6788999999888 67888999999999999999721 11 1112
Q ss_pred CCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhcc--ccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHH
Q 018172 176 ADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGS--IGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 176 ~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
.+.+++++|+||.+ +|++.|+++. ++++++.+........ .........++.++++.+.+ +..+..+.+.+
T Consensus 198 ~g~D~~~~S~~K~l--~gp~~G~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~----~~~~~~~~~~~ 270 (363)
T TIGR01437 198 LGADLVIYSGAKAI--EGPTSGLVLG-KKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLS----TGKESGAEMVA 270 (363)
T ss_pred cCCCEEEEeCCccc--CCCceEEEEE-cHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHc----cCcccHHHHHH
Confidence 35689999999976 5778999998 7888887754321110 11111222333334443221 11223334445
Q ss_pred HHHHHHHHHHhcCCcccCCCCCcc-cccccccCCCCCCcccccCC----chHHHHHHHHhhC--eeeeCCCCCCCCCCeE
Q 018172 254 RWNMLRQVIRQSGVFGLPEYPLEY-CNFTGKFTNSHPGFAWLESK----EDEDCEKLLRAER--IMARGGRRFGADAKYA 326 (360)
Q Consensus 254 ~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~g--I~~~pg~~f~~~~~~~ 326 (360)
+++.+.+.|++++++.+..+.+.. ..+ ...-+.++.. +..++.+.|++++ |.+++ .|. ..+.+
T Consensus 271 ~~~~l~~~L~~i~g~~~~~~~~~~~~~~-------~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~--~~~-~~~~~ 340 (363)
T TIGR01437 271 KLTPFIEALNTLKGVSASIVQDEAGRDI-------ARAEIRFDESELGMTAADVVQALRQGEPAIYTRG--YKA-NEGII 340 (363)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCCCCcC-------ceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEee--eee-cCCeE
Confidence 677899999999877665322110 000 0001223331 2378888998877 66665 233 47789
Q ss_pred EEEecC-ChHHHHHHHHHHHHHH
Q 018172 327 RVSMLS-REEIFNIFLERLSAIQ 348 (360)
Q Consensus 327 R~s~~~-~~e~~~~~~~~l~~~~ 348 (360)
|+++.. +++|++.++++|.+++
T Consensus 341 ~l~~~~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 341 EIDPRSVTGGQLDIIVERIREIV 363 (363)
T ss_pred EEEeecCCHHHHHHHHHHHHHhC
Confidence 998866 8999999999998864
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-22 Score=186.03 Aligned_cols=248 Identities=16% Similarity=0.182 Sum_probs=175.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH----HHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP----AETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~----~~~~~~g~~~~~ 113 (360)
..+|++.++++++. + .+++++|+++++..++..++++||+ |+++.+.|.... ..+...|.+++.
T Consensus 56 ~~~le~~la~l~g~-------~-~~~~~~sG~~Ai~~al~al~~~Gd~----Vl~~~~~~~~t~~~~~~~~~~~g~~v~~ 123 (380)
T TIGR01325 56 VAAFEERIAALEGA-------E-RAVATATGMSAIQAALMTLLQAGDH----VVASRSLFGSTVGFISEILPRFGIEVSF 123 (380)
T ss_pred HHHHHHHHHHHhCC-------C-cEEEECCHHHHHHHHHHHHhCCCCE----EEEecCCcchHHHHHHHHHHHhCCEEEE
Confidence 48999999999984 3 5788899999999999999999998 999999987644 356667999988
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-CcCCCCCCccEEEeccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-TPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-~~~~~~~~~~i~~~S~sK~ 188 (360)
++.+ .+.+.. ++++++|++++|+||+|...+ +.+.++|+++|+++|+|++|..+.. .++ ..+.++++.|+||.
T Consensus 124 v~~~d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~pl--~~g~Divv~S~sK~ 201 (380)
T TIGR01325 124 VDPTDLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQPL--KLGADVVVYSATKH 201 (380)
T ss_pred ECCCCHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch--hhCCCEEEeeccce
Confidence 8764 334432 467899999999999999988 6788888889999999999975321 222 34678999999999
Q ss_pred cCCCCceE-EEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 189 TGHAGSRI-GWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 189 ~~~~G~r~-G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
++.+|.++ |++++ ++++++.+.......+.+.++..... ++..+ +.+....++..++.+.+.+.|++++.
T Consensus 202 l~g~g~~~gG~vv~-~~~~~~~l~~~~~~~g~~~~p~~a~~---~l~~l-----~tl~~r~~~~~~~a~~la~~L~~~p~ 272 (380)
T TIGR01325 202 IDGQGRVMGGVIAG-SEELMAEVAVYLRHTGPAMSPFNAWV---LLKGL-----ETLSLRMQKQFDSALAIAEWLQAQPQ 272 (380)
T ss_pred ecCCCCeEEEEEEe-CHHHHHHHHHHHHhhCCCCCHHHHHH---HHhcc-----CcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 98788876 66766 78888888876654444444444333 33322 44555666677788889999999886
Q ss_pred cccCCCCCcc----cccccccCCCCCCcccccCCchHHHHHHHHh
Q 018172 268 FGLPEYPLEY----CNFTGKFTNSHPGFAWLESKEDEDCEKLLRA 308 (360)
Q Consensus 268 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (360)
+..+.+++.. +........+.+..+.+.+++.+.+.+.+..
T Consensus 273 v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~f~~~ 317 (380)
T TIGR01325 273 VQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVADRAAAWKVLDA 317 (380)
T ss_pred ccEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHc
Confidence 6544333311 1111111223455677777643434343333
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=188.07 Aligned_cols=239 Identities=14% Similarity=0.138 Sum_probs=167.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc----HHHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY----PAETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~----~~~~~~~g~~~~~ 113 (360)
..+|+++++++.+. + +.+++++++.++..++..++++||+ |+++...|.+. ...++..|++++.
T Consensus 72 ~~~le~~lA~l~g~-------~-~al~~~sG~~Ai~~~l~all~~Gd~----Vl~~~~~~~~t~~~~~~~~~~~G~~v~~ 139 (403)
T PRK07810 72 VSMFEERLRLIEGA-------E-ACFATASGMSAVFTALGALLGAGDR----LVAARSLFGSCFVVCNEILPRWGVETVF 139 (403)
T ss_pred HHHHHHHHHHHhCC-------C-cEEEECChHHHHHHHHHHHhCCCCE----EEEccCCcchHHHHHHHHHHHcCcEEEE
Confidence 38999999999984 3 5677777789988999889999998 99988666544 4456667999998
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. ++++++|++.+|+||||.+.+ +.+.++|+++|+++|+|++|..+... .+...+.+++++|++|.+
T Consensus 140 vd~~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~-~~~~~gaDivv~S~tK~l 218 (403)
T PRK07810 140 VDGEDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQ-RGLPLGADVVVYSGTKHI 218 (403)
T ss_pred ECCCCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccC-ChhhcCCcEEEccCCcee
Confidence 8754 334433 467999999999999999988 67888888899999999999854321 112346789999999999
Q ss_pred CCCCceE-EEEeecCHHHH-HHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 190 GHAGSRI-GWALVKDTEVA-RKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 190 ~~~G~r~-G~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
+..|.++ |++++ +++.+ +.++......+...++..+..+...|+ .+....++..++...+.+.|++++.
T Consensus 219 ~g~g~~~gG~v~~-~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~--------tl~~R~~~~~~~a~~~a~~L~~~p~ 289 (403)
T PRK07810 219 DGQGRVLGGAILG-DREYIDGPVQKLMRHTGPALSAFNAWVLLKGLE--------TLALRVRHSNASALRIAEFLEGHPA 289 (403)
T ss_pred cCCcCceeEEEEe-ChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccC--------cHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8788887 77777 55544 356655444555677777766655444 3444444556666677788888877
Q ss_pred cccCCCCCcc----cccccccCCCCCCcccccCCc
Q 018172 268 FGLPEYPLEY----CNFTGKFTNSHPGFAWLESKE 298 (360)
Q Consensus 268 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 298 (360)
+..+.+++.. +........+.+..+.+.+++
T Consensus 290 v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 324 (403)
T PRK07810 290 VRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDA 324 (403)
T ss_pred ccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 6655444311 111111122345566777754
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-22 Score=186.53 Aligned_cols=277 Identities=16% Similarity=0.106 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC--CCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS--PGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~--~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
.+|++.++++++. ++.+++++| ++++..++..+.. +|+. |++....|..+...+...|.+++.++.
T Consensus 93 ~~le~~la~~~g~-------~~~~~~~SG-~~An~~ai~~l~~~~~g~~----I~~~~~~H~s~~~~~~~~g~~~~~~~~ 160 (406)
T PRK13393 93 VLLEAELADLHGK-------EAALLFTSG-YVSNWAALSTLGSRLPGCV----ILSDELNHASMIEGIRHSRAEKRIFRH 160 (406)
T ss_pred HHHHHHHHHHhCC-------CcEEEeCCc-HHHHHHHHHHhhcCCCCCE----EEEccchhHHHHHHHHHcCCeEEEeCC
Confidence 6788888888773 345666665 5688888887754 5665 777778888888888888888777752
Q ss_pred -Ccccccc------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC----CcC---CCC-CCccE
Q 018172 117 -DANTFDK------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY----TPI---TGA-ADHDI 180 (360)
Q Consensus 117 -~~~~~~~------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~----~~~---~~~-~~~~i 180 (360)
|.+.++. ++++++|++++++||+|.+.+ +.+.++|+++++++|+|++|..+.+ ... .+. .+.++
T Consensus 161 ~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i 240 (406)
T PRK13393 161 NDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTI 240 (406)
T ss_pred CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeE
Confidence 3332221 236789999999999999998 7788899999999999999973221 111 111 22467
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh--ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL--GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
+++||||.+|++| ||+++ ++++++.+...... .+.+.++..+.++.++++.+.. . ...+.+++++++++
T Consensus 241 ~~~tlsKa~g~~G---G~~~~-~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~----~-~~~~~~~~~~~~~l 311 (406)
T PRK13393 241 IEGTLAKAFGVMG---GYITG-SAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKA----S-SAERERHQDRVARL 311 (406)
T ss_pred EEEeCchhhcccC---ceeeC-CHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhh----C-HHHHHHHHHHHHHH
Confidence 8899999999888 99987 88999988776542 2345667778888888875432 1 12346678888999
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHh-hCeeeeCCCCCCC--CCCeEEEEecC
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRA-ERIMARGGRRFGA--DAKYARVSMLS 332 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~-~gI~~~pg~~f~~--~~~~~R~s~~~ 332 (360)
.+.|++.+ +.+..+ .++++.+.+.+. ..+.+.|.+ +||.++++..... +.+++|+++..
T Consensus 312 ~~~L~~~g-~~~~~~--------------~~~i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~ 376 (406)
T PRK13393 312 RARLDKAG-IPHLPN--------------PSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSP 376 (406)
T ss_pred HHHHHHcC-CCcCCC--------------CCCeEEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECC
Confidence 99998763 333222 223444444332 455666655 6999998654332 24689999864
Q ss_pred --ChHHHHHHHHHHHHHHhch
Q 018172 333 --REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 333 --~~e~~~~~~~~l~~~~~~~ 351 (360)
++|++++++++|++++.+.
T Consensus 377 ~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 377 LHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998653
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=189.42 Aligned_cols=273 Identities=14% Similarity=0.079 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh----cCCCCCCCceEEEeCCCCCCcHHHH---HHhCCee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL----SSPGGPEPISVVSAAPYYSQYPAET---DYLRSGL 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l----~~~gd~~~~~vl~~~p~~~~~~~~~---~~~g~~~ 111 (360)
+++|+.++++++. ++++|++|+|+|++++.++..+ .++|++ |+++...|+++...+ +..|+++
T Consensus 46 ~~~r~~la~~~g~------~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~----vl~~~~~h~s~~~~~~~~~~~g~~v 115 (364)
T PLN02651 46 EKARAQVAALIGA------DPKEIIFTSGATESNNLAIKGVMHFYKDKKKH----VITTQTEHKCVLDSCRHLQQEGFEV 115 (364)
T ss_pred HHHHHHHHHHhCC------CCCeEEEeCCHHHHHHHHHHHHHHhccCCCCE----EEEcccccHHHHHHHHHHHhcCCEE
Confidence 7889999999986 5568999999999988877665 466887 999998887765443 3468898
Q ss_pred eeecCCccc-cc-----c--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEE
Q 018172 112 YKWDGDANT-FD-----K--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182 (360)
Q Consensus 112 ~~~~~~~~~-~~-----~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~ 182 (360)
+.++.+.++ ++ . +++++++++++++||||...+ +++.++|+++|+++++|.+++.+..+......+.++++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~ 195 (364)
T PLN02651 116 TYLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMS 195 (364)
T ss_pred EEEccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEE
Confidence 888775432 11 1 467999999999999999998 67788888899999999999977666556677889999
Q ss_pred eccccccCCCCceEEEEeecCHHHHHHHHHHH-------hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 018172 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFI-------ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERW 255 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (360)
.|.+|.+|++| +|+++. .++..+.+.... .....+.|.....++.++++.+. ...++.+++.++.+
T Consensus 196 ~s~hK~~gp~G--~g~l~v-~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~----~~~~~i~~~~~~l~ 268 (364)
T PLN02651 196 ISGHKIYGPKG--VGALYV-RRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAM----KEMDYDEKHMKALR 268 (364)
T ss_pred echhhhCCCCc--eEEEEE-cCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHH----HhHHHHHHHHHHHH
Confidence 99999655445 888887 444333332211 12344577777777777887654 34588889999999
Q ss_pred HHHHHHHHh-cCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCCCCC-----------
Q 018172 256 NMLRQVIRQ-SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRRFGA----------- 321 (360)
Q Consensus 256 ~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~f~~----------- 321 (360)
+++.+.|.+ ++++.+..|.... ...+..+.+.+++ .+.+...|.+ |.++.|+.+..
T Consensus 269 ~~l~~~l~~~~~~~~i~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~ 338 (364)
T PLN02651 269 ERLLNGLRAKLGGVRVNGPRDPE--------KRYPGTLNLSFAYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRA 338 (364)
T ss_pred HHHHHHHHhhCCCEEEECCCCcc--------cCcCCEEEEEeCCCCHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHH
Confidence 999999975 5666665442100 0112234444443 3777777765 99988874421
Q ss_pred -------CCCeEEEEecC--ChHHHH
Q 018172 322 -------DAKYARVSMLS--REEIFN 338 (360)
Q Consensus 322 -------~~~~~R~s~~~--~~e~~~ 338 (360)
..+.+|+|++. ++||++
T Consensus 339 ~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 339 LGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred cCCChHHhCceEEEEcCCCCCHHHcC
Confidence 13689999977 777764
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-23 Score=190.04 Aligned_cols=272 Identities=14% Similarity=0.089 Sum_probs=194.6
Q ss_pred cccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcC------------CCCCCCceEEE
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSS------------PGGPEPISVVS 92 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~------------~gd~~~~~vl~ 92 (360)
.|....+. .++++++++++. ..|.+. ++.++++|+|+|+++..++.++.. +++ +..|++
T Consensus 29 ~y~~~~~~-----~~le~~~~~~~~~~~g~~~-~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~--~~~v~~ 100 (345)
T cd06450 29 TWDESPAA-----TEMEAEVVNWLAKLFGLPS-EDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGID--KLVIVC 100 (345)
T ss_pred ccccCchh-----HHHHHHHHHHHHHHhCCCC-CCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccC--CeEEEE
Confidence 37766666 899999888764 224432 234799999999999999888743 222 124899
Q ss_pred eCCCCCCcHHHHHHhCCeeeeecCCccc-ccc-------CC------CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcE
Q 018172 93 AAPYYSQYPAETDYLRSGLYKWDGDANT-FDK-------NN------GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGK 157 (360)
Q Consensus 93 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~-~~~-------~~------~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~ 157 (360)
++++|.++...++.+|.+++.++.+.++ ++. ++ +++++++++|+||||...+ +++.++|+++|++
T Consensus 101 ~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~ 180 (345)
T cd06450 101 SDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLW 180 (345)
T ss_pred cCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCe
Confidence 9999999999999899999999876542 221 23 6788999999999999977 6788889989999
Q ss_pred EEEeecccCCCCCcC------CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHH
Q 018172 158 LIHDLAYYWPQYTPI------TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAK 231 (360)
Q Consensus 158 li~D~ay~~~~~~~~------~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (360)
+++|++|..+..+.. ....+.+.+..|+||.++ ++.++|+++. + ...+.++..
T Consensus 181 l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~-~p~g~g~~~~-~-------------------~~~~~~~l~ 239 (345)
T cd06450 181 LHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGL-VPLGCSAVLV-R-------------------ALKLWATLR 239 (345)
T ss_pred EEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhC-CCcchHHHHH-H-------------------HHHHHHHHH
Confidence 999999986433211 112345678889999766 6678888776 2 233333333
Q ss_pred HhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-------hHHHHH
Q 018172 232 ILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-------DEDCEK 304 (360)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 304 (360)
.+. . ..+++.++++.++++++.+.|++++++.+..+. ..+++.+.++. ..++.+
T Consensus 240 ~l~---~---~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-------------~~~iv~f~~~~~~~~~~~~~~i~~ 300 (345)
T cd06450 240 RFG---R---DGYGEHIDRIVDLAKYLAELIRADPGFELLGEP-------------NLSLVCFRLKPSVKLDELNYDLSD 300 (345)
T ss_pred HHh---H---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-------------ceeEEEEEECCcchhhHHHHHHHH
Confidence 332 1 667888889999999999999998766543321 11233444433 167788
Q ss_pred HHHhhCeeeeCCCCCCCCCCeEEEEecC---ChHHHHHHHHHHHH
Q 018172 305 LLRAERIMARGGRRFGADAKYARVSMLS---REEIFNIFLERLSA 346 (360)
Q Consensus 305 ~l~~~gI~~~pg~~f~~~~~~~R~s~~~---~~e~~~~~~~~l~~ 346 (360)
.|.++|+.+.++..+. .++++|+++.. ++|++++++++|++
T Consensus 301 ~L~~~g~~~~~~~~~~-~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 301 RLNERGGWHVPATTLG-GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred HHHhcCCEEEEeeEEC-CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 8888877766655554 36799999964 78999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-23 Score=190.64 Aligned_cols=276 Identities=15% Similarity=0.084 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCC-ceEEEeCCCCCCcHHH---HHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEP-ISVVSAAPYYSQYPAE---TDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~-~~vl~~~p~~~~~~~~---~~~~g~~~~~~ 114 (360)
+++|+.++++++. ++++|++|+|+|++++.++..+..+++..+ ..|+++...|+.+... ++..|++++.+
T Consensus 45 ~~~r~~la~~~g~------~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v 118 (353)
T TIGR03235 45 ERARKQVAEALGA------DTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYL 118 (353)
T ss_pred HHHHHHHHHHhCC------CCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEE
Confidence 7899999999986 556899999999999999888864221111 2388888878766544 44469999988
Q ss_pred cCCccc-cc-----c--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecc
Q 018172 115 DGDANT-FD-----K--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTL 185 (360)
Q Consensus 115 ~~~~~~-~~-----~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~ 185 (360)
+.+.++ ++ . ++++++|++++++||||.+++ +.+.++|+++|+++++|++++.+..+......+.++++.|+
T Consensus 119 ~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~ 198 (353)
T TIGR03235 119 PVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSG 198 (353)
T ss_pred ccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeeh
Confidence 876432 22 1 357899999999999999998 67788888899999999998876555444556789999999
Q ss_pred ccccCCCCceEEEEeecCHHHHHH--HHHH-------HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHH
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARK--MTRF-------IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWN 256 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~--l~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (360)
+|.+|++| +|+++. .++.... +... ......+.+.....++.++++.+. ..+++.+++++++++
T Consensus 199 ~K~~gp~g--~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~----~~~~~~~~~~~~l~~ 271 (353)
T TIGR03235 199 HKIYGPKG--IGALVI-RKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIAR----RNAQAWEVKLRAMRN 271 (353)
T ss_pred hhcCCCCc--eEEEEE-ccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHH----hhHHHHHHHHHHHHH
Confidence 99888667 888888 4443211 1110 011233455666666666776432 457788899999999
Q ss_pred HHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCCCCCC---CCeEEEEec
Q 018172 257 MLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRRFGAD---AKYARVSML 331 (360)
Q Consensus 257 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~f~~~---~~~~R~s~~ 331 (360)
++++.|++ .++.+..+.... .+.++.+.+++ .+++...|++ +|.+.+|..|+.. +.++|.+++
T Consensus 272 ~l~~~l~~-~g~~~~~~~~~~----------~~~i~~~~~~~~~~~~v~~~L~~-~i~v~~g~~~~~~~~~~~~~l~~~g 339 (353)
T TIGR03235 272 QLRDALQT-LGVKLNGDPAET----------IPHILNFSIDGVNSEALIVNLRA-DAAVSTGSACSSSKYEPSHVLQAMG 339 (353)
T ss_pred HHHHHhcc-CCeEEeCCcccc----------cCCEEEEEeCCcCHHHHHHHHhC-CeEEEchhhcCCCCCCCCHHHHHcC
Confidence 99999987 455554322111 11123333333 3788888865 9999999988542 346788887
Q ss_pred CChHHHHH
Q 018172 332 SREEIFNI 339 (360)
Q Consensus 332 ~~~e~~~~ 339 (360)
.+++++..
T Consensus 340 ~~~~~~~~ 347 (353)
T TIGR03235 340 LDTDRARG 347 (353)
T ss_pred CCHHHhCc
Confidence 66655543
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-21 Score=179.88 Aligned_cols=237 Identities=12% Similarity=0.056 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH----HHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET----DYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~~~~~ 114 (360)
.+||++++++.+. +++++++|+++++..++.+++++||+ |++++|.|.++...+ ...|.++..+
T Consensus 64 ~~Le~~iA~le~~--------~~~~~~~sG~~Ai~~~l~all~~GD~----Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v 131 (394)
T PRK09028 64 FAFQAAIVELEGG--------AGTALYPSGAAAISNALLSFLKAGDH----LLMVDSCYEPTRDLCDKILKGFGIETTYY 131 (394)
T ss_pred HHHHHHHHHHhCC--------CcEEEECCHHHHHHHHHHHHhCCCCE----EEEECCCcHHHHHHHHHhhhhcceEEEEE
Confidence 7999999999763 36899999999999999999999998 999999998887644 4568888887
Q ss_pred cCCc-ccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc-
Q 018172 115 DGDA-NTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT- 189 (360)
Q Consensus 115 ~~~~-~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~- 189 (360)
+.+. +.+.. +++||+|++++|+||||.+.+ +.+.++|+++|+++++|++|..+. ...+...+.++++.|.+|.+
T Consensus 132 ~~~~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~-~~~Pl~~GaDivv~S~tK~l~ 210 (394)
T PRK09028 132 DPMIGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPI-NSRPFEMGVDISIQAATKYIV 210 (394)
T ss_pred CCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccc-cCCccccCceEEEEeCCeEec
Confidence 6432 33433 578999999999999999988 777888888999999999998642 23334678899999999988
Q ss_pred CCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 018172 190 GHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFG 269 (360)
Q Consensus 190 ~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 269 (360)
|..+.-.|+++. ++++.+.+...+...+.+.++.....+...++ -+.-..++..++...+.+.|++++.+.
T Consensus 211 Gh~d~~~G~~~~-~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~--------TL~lR~~~~~~na~~la~~L~~~p~v~ 281 (394)
T PRK09028 211 GHSDVMLGTATA-NEKHWDQLREHSYLMGQCTSPDDVYLAMRGLR--------TLGVRLAQHEKNALKVANWLATRPEVD 281 (394)
T ss_pred CCCCEEEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHcccC--------cHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 555677787765 77787878766665666777777766655444 244555556777788999999998765
Q ss_pred cCCCCCcc----cccccccCCCCCCcccccCC
Q 018172 270 LPEYPLEY----CNFTGKFTNSHPGFAWLESK 297 (360)
Q Consensus 270 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 297 (360)
.+.++|.. +........+.+..+.+.++
T Consensus 282 ~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 313 (394)
T PRK09028 282 HVRHPAFETCPGHEFFKRDFSGSNGLFSFVLK 313 (394)
T ss_pred EEECCCCCCCccHHHHHHhccCCCceEEEEEC
Confidence 54444321 11111112234556777776
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=184.82 Aligned_cols=282 Identities=15% Similarity=0.062 Sum_probs=189.7
Q ss_pred CCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcC-ChHHHHHHHHHhhcCC--CCCCCceEEEeCCCCCCcHHHHH
Q 018172 30 MGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGT-GSTQLYQAALYALSSP--GGPEPISVVSAAPYYSQYPAETD 105 (360)
Q Consensus 30 ~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~-G~t~~l~~~~~~l~~~--gd~~~~~vl~~~p~~~~~~~~~~ 105 (360)
..|. +++++++++++.. .|. +.+++++++ |++++...+...+..+ ||. |++++|.|+.+...+.
T Consensus 59 ~~g~-----~~~~~~~~~~la~~~g~---~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~----Vl~~~~~h~~~~~~~~ 126 (398)
T cd00613 59 SQGR-----LQALFELQTMLCELTGM---DVANASLQDEATAAAEAAGLAAIRAYHKRNK----VLVPDSAHPTNPAVAR 126 (398)
T ss_pred hhhH-----HHHHHHHHHHHHHHHCC---CccceeccCchHHHHHHHHHHHHhcccCCCE----EEEcCccCcchHHHHH
Confidence 5676 7888888876542 232 223566666 5445555555666665 887 9999999999999988
Q ss_pred HhC----CeeeeecCCcc------cccc--CCCeeEEEEcCCCCCCcccch--HHHHHHhhhcCcEEEEeecccCCCCCc
Q 018172 106 YLR----SGLYKWDGDAN------TFDK--NNGAYIEVVNSPNNPDGTIRE--AVLAKVNRSAEGKLIHDLAYYWPQYTP 171 (360)
Q Consensus 106 ~~g----~~~~~~~~~~~------~~~~--~~~~~~i~~~~p~NPtG~~~~--~~~~~~~~~~~~~li~D~ay~~~~~~~ 171 (360)
.+| ++++.++.+.+ .+.. ++++++|++++|+ |||.+.+ +.+.++|+++|+++|+|+++.......
T Consensus 127 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~ 205 (398)
T cd00613 127 TRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLK 205 (398)
T ss_pred HhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCC
Confidence 887 88888876532 2222 4679999999986 8999976 677889999999999999876433333
Q ss_pred CCCCCCccEEEeccccccCCC----CceEEEEeecCHHHHHHHHHH-----------------------------Hhhcc
Q 018172 172 ITGAADHDIMLFTLSKCTGHA----GSRIGWALVKDTEVARKMTRF-----------------------------IELGS 218 (360)
Q Consensus 172 ~~~~~~~~i~~~S~sK~~~~~----G~r~G~~~~~~~~~~~~l~~~-----------------------------~~~~~ 218 (360)
..+..+.++++.|+||.+ .| |+++||++. ++++++.+... .....
T Consensus 206 ~~~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~ 283 (398)
T cd00613 206 PPGEYGADIVVGNLQKTG-VPHGGGGPGAGFFAV-KKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNI 283 (398)
T ss_pred ChHHcCCCEEEeeccccC-CCCCCCCCceeEEEE-hhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccc
Confidence 334567899999999988 45 789999998 67777664110 00001
Q ss_pred ccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc
Q 018172 219 IGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE 298 (360)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (360)
.+.+.....++...+..+. +..+++++++++++++++.+.|+++++.. .+.+..+ ..++++++.
T Consensus 284 ~~~~~~~~~~a~~~l~~~~---~~g~~~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~~-----------~~v~~~~~~ 347 (398)
T cd00613 284 CTGQALLALMAAMYIVYLG---PEGLKEIAERAHLNANYLAKRLKEVGGVL--PFNGPFF-----------HEFVLRLPP 347 (398)
T ss_pred eecHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHHhcCCcc--cCCCCee-----------EEEEEEcCC
Confidence 1222233333333333222 26788899999999999999999986543 1222211 013455542
Q ss_pred -----hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC--ChHHHHHHHHHH
Q 018172 299 -----DEDCEKLLRAERIMARGGRRFGADAKYARVSMLS--REEIFNIFLERL 344 (360)
Q Consensus 299 -----~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l 344 (360)
...+.+.|.++||.+.... . ...+.+|+|+.. ++||+++++++|
T Consensus 348 ~~~~~~~~~~~~L~~~gi~~~~~~-~-~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 348 LYGIRAEDLAKALIDGGFHAPTMY-L-PVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred cchHHHHHHHHhhhhcCccccccc-c-CCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 2667777888999865421 1 125689999855 899999998864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=185.52 Aligned_cols=262 Identities=11% Similarity=0.064 Sum_probs=178.4
Q ss_pred CcEEEcCChHHHHHHHHHhhcC---------CCCCCCceEEEeCCCCCCcH-HHHHHhCCe------------eeeecC-
Q 018172 60 RHIVIGTGSTQLYQAALYALSS---------PGGPEPISVVSAAPYYSQYP-AETDYLRSG------------LYKWDG- 116 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~---------~gd~~~~~vl~~~p~~~~~~-~~~~~~g~~------------~~~~~~- 116 (360)
+.+++++++++++..+++.+.. +|.. +|+..+-+|.... ..+...+.. +..++.
T Consensus 98 ~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~---~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (396)
T PRK04073 98 DMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKA---EIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYG 174 (396)
T ss_pred CeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCC---EEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCC
Confidence 4799999999999998887632 2322 3777766666544 433333211 122221
Q ss_pred Ccccccc--CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCc--CC-CCCCccEEEeccc
Q 018172 117 DANTFDK--NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTP--IT-GAADHDIMLFTLS 186 (360)
Q Consensus 117 ~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~--~~-~~~~~~i~~~S~s 186 (360)
|.+.+.. ++++++|+++.++||||.+++ +.+.++|+++|+++|+||+|.+..... .. ...+...-+.++|
T Consensus 175 d~~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~s 254 (396)
T PRK04073 175 DLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILG 254 (396)
T ss_pred CHHHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEec
Confidence 2222322 357889999999999999987 356788999999999999998432111 11 1122222244689
Q ss_pred cccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 187 KCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 187 K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
|.+|.+|+|+||+++ ++++++.+.......+++.|++.|.++.++|+.+.+. ...++.+++++++.+.|+++.
T Consensus 255 K~lg~gg~~ig~~~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~------~l~~~~~~~~~~l~~~L~~l~ 327 (396)
T PRK04073 255 KALGGGVFPISCVAA-NRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEE------KLPERSLELGEYFKEQLKEID 327 (396)
T ss_pred ccccCCCCcceEEEE-cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHhhc
Confidence 999988899999998 8999988866545567788999999999988754322 234555667888888888763
Q ss_pred CcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHH
Q 018172 267 VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGADAKYARVSM--LSREEIFNIFLER 343 (360)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~ 343 (360)
...+. ..++.++|++++++.. ..+.+.|.++||.+.+. .++++||+. ..++|++++++++
T Consensus 328 ~~~i~------------~~~~~g~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----~~~~iRi~p~l~~t~e~i~~~~~~ 390 (396)
T PRK04073 328 NPMIK------------EVRGRGLFIGVELNEPARPYCEALKEEGLLCKET-----HETVIRFAPPLVITKEELDWAFEK 390 (396)
T ss_pred CCccc------------ceecceEEEEEEecchHHHHHHHHHHCCeEEecC-----CCCEEEEECCcccCHHHHHHHHHH
Confidence 11111 1123455777777544 66677788899999863 246999995 4599999999999
Q ss_pred HHHHH
Q 018172 344 LSAIQ 348 (360)
Q Consensus 344 l~~~~ 348 (360)
|++++
T Consensus 391 l~~~l 395 (396)
T PRK04073 391 IKAVL 395 (396)
T ss_pred HHHHh
Confidence 99876
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=183.11 Aligned_cols=277 Identities=17% Similarity=0.132 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCC-CcEEEcCChHHHHHHHHHhh---cCCCCCCCceEEEeCCCCCCcHHH----HHHhCCe
Q 018172 39 PELAEAINNLHHVVDNAVSDG-RHIVIGTGSTQLYQAALYAL---SSPGGPEPISVVSAAPYYSQYPAE----TDYLRSG 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~-~~i~~t~G~t~~l~~~~~~l---~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~ 110 (360)
+++|+.++++++. ++ ++|++++|+|++++.++.++ +++|++ |++..-.|++.... .+..|.+
T Consensus 46 ~~~r~~la~~lg~------~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~----vl~~~~~~~s~~~~~~~~~~~~g~~ 115 (371)
T PF00266_consen 46 EEAREALAKLLGA------PPDEEVVFTSNGTEALNAVASSLLNPLKPGDE----VLVTSNEHPSNRYPWEEIAKRKGAE 115 (371)
T ss_dssp HHHHHHHHHHHTS------STTEEEEEESSHHHHHHHHHHHHHHHGTTTCE----EEEEESSHHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHhcCC------ccccccccccccchhhhhhhhccccccccccc----cccccccccccccccccccccchhh
Confidence 7999999999997 55 78999999999999999999 788998 99999888877733 3456899
Q ss_pred eeeecCCcccc-c-----c--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEE
Q 018172 111 LYKWDGDANTF-D-----K--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181 (360)
Q Consensus 111 ~~~~~~~~~~~-~-----~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~ 181 (360)
+..++.+.++. + . ++++++++++..+|-||...+ +.+.++|+++++++++|.+++.+..+......+.+++
T Consensus 116 v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~ 195 (371)
T PF00266_consen 116 VRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFL 195 (371)
T ss_dssp EEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEE
T ss_pred hccccccccchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhhccCCceeEechhcccccccccccccccee
Confidence 98887654322 1 1 479999999999999999998 7778888889999999999998777666677889999
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHHhh---------------------ccccCChHHHHHHHHHhcccCCCc
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL---------------------GSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~---------------------~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
++|.+|.+|++| +|+++. +++.++.++..... ...+.+.+...++..+++.+.
T Consensus 196 ~~s~~Kl~gp~G--~g~l~v-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~--- 269 (371)
T PF00266_consen 196 VFSSHKLGGPPG--LGFLYV-RPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLE--- 269 (371)
T ss_dssp EEESTSTTSSST--EEEEEE-EHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHH---
T ss_pred eecccccCCCCc--hhhhee-hhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhh---
Confidence 999999667676 798888 67888887432211 112455666666666777652
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~ 318 (360)
+.-+++++++..++.+++.+.|.+++++.+..+.... ..+..+.+.+++ .+.+.+.|.++||.+..|..
T Consensus 270 ~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~L~~~~I~~~~G~~ 340 (371)
T PF00266_consen 270 EIGIERIRERIRELAEYLREALEELPGIEVLGPDDEP---------RRPSIVSFNLPGSDADDVVKYLEERGIAVSTGSA 340 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGG---------BGTTEEEEEETTSSHHHHHHHHHHHTEEEEESTT
T ss_pred ccccccchhhhhhHHHHHHhhhhcCCceeEeeecccc---------cccceEEEeecCCCHHHHHHHHhhcCEEEeccCc
Confidence 2678888999999999999999999887775542111 111233444433 38899999999999999765
Q ss_pred CCC-------CCCeEEEEecC--ChHHHHHH
Q 018172 319 FGA-------DAKYARVSMLS--REEIFNIF 340 (360)
Q Consensus 319 f~~-------~~~~~R~s~~~--~~e~~~~~ 340 (360)
... ..+.+|+|+.. ++||++++
T Consensus 341 ~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 341 CAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp TCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred ccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 530 14799999976 89999875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-21 Score=178.91 Aligned_cols=288 Identities=12% Similarity=0.073 Sum_probs=195.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~ 113 (360)
..+|++.++++++. + +++++++++.++..++. ++++||+ |+++.+.|..+... +...|++++.
T Consensus 49 ~~~le~~la~l~g~-------~-~~l~~~sG~~al~~~l~-ll~~Gd~----Vl~~~~~y~~~~~~~~~~~~~~G~~v~~ 115 (378)
T TIGR01329 49 RTALESLLAKLDKA-------D-RAFAFSSGMAALDVITR-LLNNGDE----IIAGDDLYGGTDRLLTQVVPRSGVVVVH 115 (378)
T ss_pred HHHHHHHHHHHhCC-------C-cEEEECCHHHHHHHHHH-HhCCCCE----EEEcCCCchHHHHHHHHHHHHcCcEEEE
Confidence 47899999999884 3 45556666778888776 7899998 99999999987654 4457999999
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-CcCCCCCCccEEEeccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-TPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-~~~~~~~~~~i~~~S~sK~ 188 (360)
++.+ .+.++. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+.. .++ ..+.+++++|++|.
T Consensus 116 vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l--~~g~Di~v~S~tK~ 193 (378)
T TIGR01329 116 VDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPL--ELGADIVYHSATKF 193 (378)
T ss_pred eCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh--hcCCcEEEEeccee
Confidence 8864 344433 578999999999999999998 6778888889999999999865432 222 34668999999997
Q ss_pred cCC-CCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 189 TGH-AGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 189 ~~~-~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
++- .+.+.|+++++++++.+.+...+...+.+.++.....+ +..+ +.+....++-.++...+.+.|++++.
T Consensus 194 l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~---~~~l-----~tl~~R~e~~~~na~~la~~L~~~~~ 265 (378)
T TIGR01329 194 LAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLL---LRGI-----KTLAIRIEKQQENARAIAMFLSTHPR 265 (378)
T ss_pred ccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHH---HccC-----CCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 753 45788999886677778887766644555555544332 2221 34555566667777788888888876
Q ss_pred cccCCCCCcc----cccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCC---------------------
Q 018172 268 FGLPEYPLEY----CNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRF--------------------- 319 (360)
Q Consensus 268 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f--------------------- 319 (360)
+..+.+++-. +..........+..+.+.+.+. ..+.+.|+..+|.++-|...
T Consensus 266 v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~ 345 (378)
T TIGR01329 266 VKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSFGSVNSLISMPCFMSHASIPAEVREE 345 (378)
T ss_pred ccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcccccCCCCCCceeeCCCccccccCCHHHHHh
Confidence 5433332211 1111111123444667777442 46677777778777766432
Q ss_pred -CCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 320 -GADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 320 -~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
|..++.+|||++.+ +.+.+++.|++.+++
T Consensus 346 ~gi~~~liR~svGlE--~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 346 RGLPEDLVRLSVGIE--DVDDLISDLDIAFVT 375 (378)
T ss_pred cCCCCCeEEEEeccC--CHHHHHHHHHHHHHh
Confidence 12356899999662 344556666666553
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-21 Score=181.99 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=123.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH----HHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP----AETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~----~~~~~~g~~~~~ 113 (360)
..+|++++++++|. + ..++++++++++..++..++++||+ |+++.+.|+... ..++..|++++.
T Consensus 59 ~~~le~~lA~l~g~-------~-~~v~~~sG~~Ai~~al~~l~~~Gd~----Vl~~~~~y~~t~~~~~~~~~~~G~~v~~ 126 (418)
T TIGR01326 59 TDVLEQRIAALEGG-------V-AALAVASGQAAITYAILNLAQAGDN----IVSSSYLYGGTYNLFKHTLKRLGIEVRF 126 (418)
T ss_pred HHHHHHHHHHHhCC-------C-eEEEEccHHHHHHHHHHHHhCCCCE----EEEECCCcHHHHHHHHHHHHHcCcEEEE
Confidence 48999999999984 3 5788888899999999999999998 999999987654 345668999998
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+. ...+...+.++++.|+||.+
T Consensus 127 v~~~d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~-~~~~l~~g~Divv~S~sK~l 205 (418)
T TIGR01326 127 VDPDDPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPY-LCRPIDHGADIVVHSATKYI 205 (418)
T ss_pred ECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhh-cCCchhcCCeEEEECccccc
Confidence 8753 233332 467899999999999999988 678888999999999999997542 11222356899999999999
Q ss_pred CCCCceEEEEeec
Q 018172 190 GHAGSRIGWALVK 202 (360)
Q Consensus 190 ~~~G~r~G~~~~~ 202 (360)
+.+|+|+||++++
T Consensus 206 ~g~G~~lGg~v~~ 218 (418)
T TIGR01326 206 GGHGTAIGGVIVD 218 (418)
T ss_pred cCCccceEEEEEe
Confidence 9899999999984
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=175.23 Aligned_cols=211 Identities=15% Similarity=0.137 Sum_probs=157.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHh----CCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYL----RSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~----g~~~~~ 113 (360)
..+|+++++++.+. +++++++|+++++.+++ .++++||+ |+++.+.|......+... +.+ ..
T Consensus 56 ~~~le~~lA~leg~--------~~~v~~~sG~aAi~~~l-~~l~~GD~----VI~~~~~yg~~~~~~~~~~~~~~~~-~~ 121 (364)
T PRK07269 56 RAKLEETLAAIESA--------DYALATSSGMSAIVLAF-SVFPVGSK----VVAVRDLYGGSFRWFNQQEKEGRFH-FT 121 (364)
T ss_pred HHHHHHHHHHHhCC--------CeEEEeCCHHHHHHHHH-HHhCCCCE----EEEecCCcCchHHHHHHHHhcCcEE-EE
Confidence 48999999999983 47999999999999988 46789998 999999999887655443 222 23
Q ss_pred ecCCcccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccccC
Q 018172 114 WDGDANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTG 190 (360)
Q Consensus 114 ~~~~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~~ 190 (360)
+..|.+.+.. +++||+|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+.. ..+-..+.+++++|++|.++
T Consensus 122 ~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~-~~pl~~gaDivv~S~tK~l~ 200 (364)
T PRK07269 122 YANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIY-QRPIELGADIVLHSATKYLS 200 (364)
T ss_pred ecCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc-CCchhhCCcEEEecCceecc
Confidence 4455555543 568999999999999999988 7778888889999999999875322 12224567899999999987
Q ss_pred CCCc-eEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 018172 191 HAGS-RIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFG 269 (360)
Q Consensus 191 ~~G~-r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 269 (360)
-.|- =.|++++.++++.+.++..+...+...+++....+...|+ .++...++.+++...+.+.|++++.+.
T Consensus 201 g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~--------tL~~r~~~~~~na~~~a~~L~~~p~v~ 272 (364)
T PRK07269 201 GHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLK--------TLSLRMERSTANAQEVVAFLKKSPAVK 272 (364)
T ss_pred CCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC--------cHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3332 3578887678888888766655555666666665555443 355666666888888889999887654
Q ss_pred cC
Q 018172 270 LP 271 (360)
Q Consensus 270 ~~ 271 (360)
..
T Consensus 273 ~v 274 (364)
T PRK07269 273 EV 274 (364)
T ss_pred EE
Confidence 43
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=175.92 Aligned_cols=286 Identities=12% Similarity=0.022 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH----HHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET----DYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~~~~~ 114 (360)
..|+++++++.+. +++++++|+++++..++..++++||+ |++++|.|.+....+ +..|+++..+
T Consensus 53 ~~lE~~lA~l~g~--------~~~~~~~sG~~Ai~~al~all~~GD~----Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~ 120 (377)
T TIGR01324 53 FALQDAMCELEGG--------AGCYLYPSGLAAVTNSILAFVKAGDH----VLMVDSAYEPTRYFCDIVLKRMGVDITYY 120 (377)
T ss_pred HHHHHHHHHHhCC--------CcEEEECcHHHHHHHHHHHhcCCCCE----EEEcCCCcHHHHHHHHHHHHhcCcEEEEE
Confidence 6999999999984 36899999999999999999999998 999999998876543 4568888877
Q ss_pred cCCc-ccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccccC
Q 018172 115 DGDA-NTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTG 190 (360)
Q Consensus 115 ~~~~-~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~~ 190 (360)
+.+. +.+.. ++++|+|++++|+||+|...+ +.+.++|+++|+++|+|++|..+... .+...+.+++++|++|.++
T Consensus 121 d~~~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~-~pl~~gaDivv~S~tK~l~ 199 (377)
T TIGR01324 121 DPLIGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLF-KPLEHGVDISIQAGTKYLV 199 (377)
T ss_pred CCCCHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc-CccccCceEEEecCceecc
Confidence 5432 33432 578999999999999999988 77888898899999999999865321 2335678899999999986
Q ss_pred -CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 018172 191 -HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFG 269 (360)
Q Consensus 191 -~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 269 (360)
..+...|++++ +++..+.+.......+.+.++.....+...+ +.+....++..++...+.+.|.+++.+.
T Consensus 200 G~~d~~gG~v~~-~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl--------~tl~~R~~~~~~~a~~la~~L~~~p~v~ 270 (377)
T TIGR01324 200 GHSDIMIGTVVA-NARTWDQLREHSYLMGQMVDADDAYTTLRGL--------RTLGVRLKQHQESSLAIAKWLSEQPEVA 270 (377)
T ss_pred CCCCceEEEEEe-CHHHHHHHHHHHHHhCCCCCHHHHHHHHhhh--------hhHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 34567888887 7777777775544445555664444443333 2334445555666677888999887665
Q ss_pred cCCCCCcc----cccccccCCCCCCcccccCCc-h----HHHHHHHHhhCeeeeCCCCC------------------CCC
Q 018172 270 LPEYPLEY----CNFTGKFTNSHPGFAWLESKE-D----EDCEKLLRAERIMARGGRRF------------------GAD 322 (360)
Q Consensus 270 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~l~~~gI~~~pg~~f------------------~~~ 322 (360)
.+.+++.. +........+.+..+.+.+++ . ..+.+.|+-.++.+.-|... +..
T Consensus 271 ~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~~~~~~~~~~~~~~~~~ 350 (377)
T TIGR01324 271 RVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESLALCNQPELGHRPNIKRNLE 350 (377)
T ss_pred EEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEeccCCCccceeecCCCCCCHHHHHhccCC
Confidence 44444311 111111112334556777754 2 33444444434443222211 112
Q ss_pred CCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 323 AKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 323 ~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
++.+|||++.+ +.+.+++.|.+.+
T Consensus 351 ~~liR~svGlE--~~~dl~~dl~~al 374 (377)
T TIGR01324 351 GPLIRVHIGLE--NVDDLKADLKAGF 374 (377)
T ss_pred CCEEEEEeCCC--CHHHHHHHHHHHH
Confidence 35799999762 2334444444444
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=179.35 Aligned_cols=276 Identities=14% Similarity=0.124 Sum_probs=185.2
Q ss_pred HHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH-----HHHhCCeeeeecC
Q 018172 42 AEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE-----TDYLRSGLYKWDG 116 (360)
Q Consensus 42 r~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~-----~~~~g~~~~~~~~ 116 (360)
|+.++++++. +..+|++++| ++++..++.+++++||+ |+++.|+|..+... +...|++++.++.
T Consensus 77 ~~~la~~~g~------~~~~i~~~sg-t~al~~~l~~l~~~gd~----Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 145 (416)
T PRK00011 77 IDRAKELFGA------EYANVQPHSG-SQANAAVYFALLKPGDT----ILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGV 145 (416)
T ss_pred HHHHHHHhCC------CceeeecCCc-hHHHHHHHHHhcCCCCE----EEEeccccCCccccccccccccceeeEeecCc
Confidence 3467788885 3435666665 77999999999999998 99999999865321 2334677777766
Q ss_pred Ccc--cccc--------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-----CcCCCCCCccE
Q 018172 117 DAN--TFDK--------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-----TPITGAADHDI 180 (360)
Q Consensus 117 ~~~--~~~~--------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-----~~~~~~~~~~i 180 (360)
+.+ .++. +.++++|++++++|| ...+ +.+.++|+++|+++|+|++|..+.. +.... ..++
T Consensus 146 ~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~~~--~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~~di 221 (416)
T PRK00011 146 DEETGLIDYDEVEKLALEHKPKLIIAGASAYS--RPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--HADV 221 (416)
T ss_pred CcccCCcCHHHHHHHHHhcCCCEEEECCCcCC--CccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--CCcE
Confidence 532 2211 236889988766655 3444 5677888889999999999864221 11112 4578
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChH-HHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKE-SQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLR 259 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (360)
+++|+||.+ +|.|.||++++++++.+.+.........+.+.. .+.++..++.... ...+++.+++++++++++.
T Consensus 222 ~~~S~~K~l--~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~---~~~~~~~~~~~~~~~~~l~ 296 (416)
T PRK00011 222 VTTTTHKTL--RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEAL---EPEFKEYAQQVVKNAKALA 296 (416)
T ss_pred EEecCCcCC--CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHH
Confidence 999999976 678889999955789998877664433333322 2222222232111 1457888899999999999
Q ss_pred HHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeeeCCC-CCC----CCCCeEEEEe
Q 018172 260 QVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMARGGR-RFG----ADAKYARVSM 330 (360)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~pg~-~f~----~~~~~~R~s~ 330 (360)
+.|++.+ +.+.. .+ ..++++|+.+++ ...+.+.|+++||.+..+. .+. ..+..+|++.
T Consensus 297 ~~L~~~g-~~~~~-~~-----------~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~ 363 (416)
T PRK00011 297 EALAERG-FRVVS-GG-----------TDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGT 363 (416)
T ss_pred HHHHhCC-Ceeee-cC-----------CCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecC
Confidence 9999874 43321 11 123477887752 2678888999999997432 121 1245799964
Q ss_pred ------cCChHHHHHHHHHHHHHHhc
Q 018172 331 ------LSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 331 ------~~~~e~~~~~~~~l~~~~~~ 350 (360)
..+++++++++++|++++..
T Consensus 364 ~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 364 PAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred HHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 22689999999999998876
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=176.69 Aligned_cols=287 Identities=15% Similarity=0.107 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH---HHHHhCCeeeeec
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA---ETDYLRSGLYKWD 115 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~---~~~~~g~~~~~~~ 115 (360)
.+|+++++++.+. ++.+++++| ++++..++..++++||+ |+++++.|+.... .++..|++++.++
T Consensus 50 ~~lE~~la~leg~-------~~~v~~ssG-~~Ai~~~l~all~~Gd~----Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~ 117 (397)
T PRK05939 50 AALEAKITKMEGG-------VGTVCFATG-MAAIAAVFLTLLRAGDH----LVSSQFLFGNTNSLFGTLRGLGVEVTMVD 117 (397)
T ss_pred HHHHHHHHHHhCC-------CeEEEeCCH-HHHHHHHHHHHcCCCCE----EEECCCccccHHHHHHHHHhcCCEEEEEC
Confidence 5999999999984 345555555 89999999999999998 9999999987654 4566799999887
Q ss_pred CC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccccCC
Q 018172 116 GD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTGH 191 (360)
Q Consensus 116 ~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~~~ 191 (360)
.+ .+.+.. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+.. ..+...+.++++.|+||.++.
T Consensus 118 ~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~-~~~~~~gaDivv~S~sK~~~g 196 (397)
T PRK05939 118 ATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL-FRPKDVGASLVINSLSKYIAG 196 (397)
T ss_pred CCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccc-cCccccCCEEEEecCeecccC
Confidence 53 444443 578999999999999999988 7788888889999999999874421 122345789999999999998
Q ss_pred CCceEEEEeecCHH--------H-------------HHHHHH-HHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHH
Q 018172 192 AGSRIGWALVKDTE--------V-------------ARKMTR-FIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRR 249 (360)
Q Consensus 192 ~G~r~G~~~~~~~~--------~-------------~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (360)
.|.++|+++..+.. + +..+.. .....+...++.....+...++ ....++++
T Consensus 197 ~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~-------tl~~R~~~ 269 (397)
T PRK05939 197 HGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRIAIGAE-------TLALRVDR 269 (397)
T ss_pred CCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcC-------cHHHHHHH
Confidence 89999998873211 1 111211 1112334455554444433332 44444444
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCcc----cccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCC------
Q 018172 250 LMSERWNMLRQVIRQSGVFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRF------ 319 (360)
Q Consensus 250 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f------ 319 (360)
. .++...+.+.|++++.+..+.+++-. +........+.+..+.+.+++...+.+.+..-.+. ..+..+
T Consensus 270 ~-~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~~~~~~~f~~~l~l~-~~~~s~G~~~sl 347 (397)
T PRK05939 270 S-CSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELADGIDCFDFLNRLKLV-IKATHLGDTRTL 347 (397)
T ss_pred H-HHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCCHHHHHHHHHhCCcc-eEccCCCCCCee
Confidence 4 44777888999999866554444311 11111112345667777886554444444444442 111111
Q ss_pred --------------------CCCCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 320 --------------------GADAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 320 --------------------~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
|..++.+|+|++.+ +.+.+++.|.+.+.
T Consensus 348 ~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svGlE--d~~dLi~dl~~Al~ 395 (397)
T PRK05939 348 VIPVAPTIYYEMGAERRASMGIADSLIRVSVGIE--DEADLIADFEQALD 395 (397)
T ss_pred eecCcccccccCCHHHHHhcCCCCCeEEEEeCCC--CHHHHHHHHHHHHh
Confidence 22356899999663 34555666666554
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-21 Score=181.66 Aligned_cols=276 Identities=17% Similarity=0.080 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc--CCCCCCCceEEEeCCCCCCcHHHHHHhC--------
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS--SPGGPEPISVVSAAPYYSQYPAETDYLR-------- 108 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~--~~gd~~~~~vl~~~p~~~~~~~~~~~~g-------- 108 (360)
.++++.++++++. ..+++++++|+++++..++..+. .+++. |++.+++|..........+
T Consensus 82 ~~l~~~l~~~~~~------~~~~v~~~~sgsea~~~al~~~~~~~~~~~----ii~~~~~yhg~~~~~~~~~~~~~~~~~ 151 (413)
T cd00610 82 VELAELLLALTPE------GLDKVFFVNSGTEAVEAALKLARAYTGRKK----IISFEGAYHGRTLGALSLTGSKKYRGG 151 (413)
T ss_pred HHHHHHHHHhCCC------CCCEEEEcCcHHHHHHHHHHHHHHHcCCCe----EEEECCCcCCccHHHHHhcCCcccccc
Confidence 5566666666553 34689999999999999999874 55676 9999999998765544432
Q ss_pred -----CeeeeecCC------------cccccc---C--CCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEe
Q 018172 109 -----SGLYKWDGD------------ANTFDK---N--NGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHD 161 (360)
Q Consensus 109 -----~~~~~~~~~------------~~~~~~---~--~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D 161 (360)
.+++.++.+ .+.+.. . .++++++++..+|++|.+++ +.+.++|+++|+++|+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D 231 (413)
T cd00610 152 FGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIAD 231 (413)
T ss_pred CCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 123444433 122211 1 24556666555667798764 45678899999999999
Q ss_pred ecccCCCCCc---CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHH--HHHHhhccccCChHHHHHHHHHhccc
Q 018172 162 LAYYWPQYTP---ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKM--TRFIELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 162 ~ay~~~~~~~---~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
|+|.+..... .....+...-+.|+||.++ .|+|+||+++ ++++++.+ .......+.+.+++.+.++.++++.+
T Consensus 232 ev~~g~g~~g~~~~~~~~~~~~d~~t~sK~l~-~g~~~g~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l 309 (413)
T cd00610 232 EVQTGFGRTGKMFAFEHFGVEPDIVTLGKGLG-GGLPLGAVLG-REEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVL 309 (413)
T ss_pred ccccCCCcCcchhhHhhcCCCCCeEEEccccc-CccccEEEEE-cHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 9998531111 1111222223568899999 5899999998 88888886 33333456788889998888888754
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCCCcccccccccCCCCCCcccccCCc-----------hHHHHH
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF-GLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----------DEDCEK 304 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 304 (360)
.+ ++..++++++.+++.+.|+.+... .... ...+.+.++++.+++ ...+.+
T Consensus 310 ~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-----------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (413)
T cd00610 310 EE------EGLLENAAELGEYLRERLRELAEKHPLVG-----------DVRGRGLMIGIELVKDRATKPPDKELAAKIIK 372 (413)
T ss_pred Hh------ccHHHHHHHHHHHHHHHHHHHHhhCCcEE-----------EeecCceEEEEEEecCCCcCCcchHHHHHHHH
Confidence 32 245566777777777777665211 1100 011233455665532 155677
Q ss_pred HHHhhCeeeeCCCCCCCCCCeEEEEecC--ChHHHHHHHHHHHHHH
Q 018172 305 LLRAERIMARGGRRFGADAKYARVSMLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 305 ~l~~~gI~~~pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~ 348 (360)
.|.++||.+.|+. .+++|++++. +++++++++++|.+++
T Consensus 373 ~l~~~gv~v~~~~-----~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 373 AALERGLLLRPSG-----GNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred HHHHCCeEEeecC-----CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 8889999999964 4689998755 8999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-20 Score=173.62 Aligned_cols=252 Identities=15% Similarity=0.133 Sum_probs=171.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH----HHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA----ETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~----~~~~~g~~~~~ 113 (360)
..+|++.++++++. ++.+++++| +.++..++ .++++||+ |+++.|+|+.... .+...|++++.
T Consensus 52 ~~~Le~~lA~l~g~-------~~~~~~~sG-~aai~~~~-~~l~~Gd~----Viv~~~~y~~~~~~~~~~~~~~G~~v~~ 118 (377)
T PRK07671 52 RAALEELIAVLEGG-------HAGFAFGSG-MAAITAVM-MLFSSGDH----VILTDDVYGGTYRVMTKVLNRFGIEHTF 118 (377)
T ss_pred HHHHHHHHHHHhCC-------CceEEeCCH-HHHHHHHH-HHhCCCCE----EEECCCccchHHHHHHHHHhcCCeEEEE
Confidence 48999999999984 345666666 56776655 57889998 9999999995544 33446999998
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+... .+-..+.+++++|+||.+
T Consensus 119 v~~~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~-~p~~~g~Divv~S~sK~l 197 (377)
T PRK07671 119 VDTSNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQ-SPISLGADIVLHSATKYL 197 (377)
T ss_pred ECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccC-ChhhhCCeEEEecCcccc
Confidence 8753 344433 468999999999999999988 67788888899999999999753221 122345689999999999
Q ss_pred CCCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 GHAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+-++ .-.|++++.++++.+.+...+...+...++.....+...+ +.+....++..++...+.+.|.+++.+
T Consensus 198 ~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l--------~tl~~R~~~~~~na~~la~~L~~~~~v 269 (377)
T PRK07671 198 GGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGL--------KTLGIRMEEHETNSRAIAEFLNNHPAV 269 (377)
T ss_pred cCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCc--------ChHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 7333 3457777767888898888777655555555444443322 335556667778889999999998776
Q ss_pred ccCCCCCcc----cccccccCCCCCCcccccCCchHHHHHHHHhhCe
Q 018172 269 GLPEYPLEY----CNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERI 311 (360)
Q Consensus 269 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI 311 (360)
..+.+++.. +........+.+..+.+++.+.+.+.+.+.+-.+
T Consensus 270 ~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~l 316 (377)
T PRK07671 270 NKVYYPGLPSHPNHELAKEQANGFGGMISFDVGSEETANKVLERLQY 316 (377)
T ss_pred eEEECCCCCCCccHHHHHhhCCCCCceEEEEeCCHHHHHHHHHhCCc
Confidence 555444311 1111111224455677777443444444444443
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-20 Score=173.78 Aligned_cols=280 Identities=16% Similarity=0.167 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
.++++.++++++. +++++|+|+|+++.+++.++ +++||+ |+++.++|..+...+...|++++.++++
T Consensus 34 ~~~e~~la~~~g~--------~~~v~~~sgt~aL~~~l~al~~~pGd~----Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 34 RRCETWLENRTGT--------KKALLTPSCTAALEMAALLLDIQPGDE----VIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred HHHHHHHHHHhCC--------CeEEEeCCHHHHHHHHHHHcCCCCcCE----EEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 6777777777663 47999999999999998888 889998 9999999999999999999999999988
Q ss_pred cccccc---------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-CCcCCCCCCccEEEecc-
Q 018172 118 ANTFDK---------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ-YTPITGAADHDIMLFTL- 185 (360)
Q Consensus 118 ~~~~~~---------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~-~~~~~~~~~~~i~~~S~- 185 (360)
.+++.. ++++++|+ |+||+|...+ +.+.++|+++|+++|+|++|+.+. +....-..-.++.++||
T Consensus 102 ~~~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~ 178 (376)
T TIGR02379 102 PDTMNIDETLIESAITHRTKAIV---PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFH 178 (376)
T ss_pred CCcCCCCHHHHHHhcCcCceEEE---EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCC
Confidence 665433 35788886 7788999888 678888888999999999998643 21111111113444554
Q ss_pred -ccccCCCCceEEEEeecCHHHHHHHHHHHhhcc-----------------ccCCh-HHHHHHHHHhcccCCCchhHHHH
Q 018172 186 -SKCTGHAGSRIGWALVKDTEVARKMTRFIELGS-----------------IGVSK-ESQLRAAKILGIVSDDYPNFFEY 246 (360)
Q Consensus 186 -sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~-----------------~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 246 (360)
+|.+. +|.+.|+++++++++.+.++..+..+. .+.|. +.-..|+..+..+ ..+++
T Consensus 179 ~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL-----~~l~~ 252 (376)
T TIGR02379 179 ETKNYT-SGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQL-----EQADR 252 (376)
T ss_pred CCCcCc-ccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHH-----HHhHH
Confidence 37776 777889999977999999988775321 11111 1111122222222 34444
Q ss_pred HHHHHHHHHHHHHHHHHhcC---CcccCC-CCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCC--
Q 018172 247 GRRLMSERWNMLRQVIRQSG---VFGLPE-YPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGGR-- 317 (360)
Q Consensus 247 ~~~~~~~~~~~l~~~l~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~-- 317 (360)
..+.-++..++..+.|..+. ....+. +.+...++ .++++.++. .+.+.+.|+++||.++++.
T Consensus 253 ~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~r~~l~~~L~~~gI~~~~~~~p 323 (376)
T TIGR02379 253 INQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNA---------HMFYIKLKDEDDRNELIKYLKEQEIMAVFHYVP 323 (376)
T ss_pred HHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeee---------EEEEEEECCcCCHHHHHHHHHHCCCCccccCcC
Confidence 44444444455666666553 122221 11211111 123455543 3888999999999987432
Q ss_pred --C------CCC-C----------CCeEEEEecC--ChHHHHHHHHHHHHHH
Q 018172 318 --R------FGA-D----------AKYARVSMLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 318 --~------f~~-~----------~~~~R~s~~~--~~e~~~~~~~~l~~~~ 348 (360)
. ++. . ...+.+.+.. ++++++..+++|++++
T Consensus 324 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 324 LHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred CCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 1 110 0 2246666544 8999999999998865
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-20 Score=176.05 Aligned_cols=290 Identities=15% Similarity=0.161 Sum_probs=187.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH----HHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA----ETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~----~~~~~g~~~~~ 113 (360)
...|++.++++.+. + ..++++|+++++..++..++++||+ |+++.+.|+.... .++..|++++.
T Consensus 66 ~~~Le~~lA~leg~-------~-~al~~~sG~~Ai~~al~~ll~~GD~----Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~ 133 (431)
T PRK08248 66 TDVFEKRIAALEGG-------I-GALAVSSGQAAITYSILNIASAGDE----IVSSSSLYGGTYNLFAHTLPKLGITVKF 133 (431)
T ss_pred HHHHHHHHHHHhCC-------C-cEEEECCHHHHHHHHHHHHhCCCCE----EEEccCchhhHHHHHHHHHHhCCEEEEE
Confidence 48999999999984 3 5778888899999999999999998 9999999976543 45668999998
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+. ...+...+.++++.|++|.+
T Consensus 134 vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~-~~~pl~~gaDivv~S~tK~l 212 (431)
T PRK08248 134 VDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPY-LLRPIEHGADIVVHSATKFI 212 (431)
T ss_pred ECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccc-cCChhHcCCCEEEEcCcccc
Confidence 8754 344433 467999999999999999998 677788888999999999987432 12222568899999999999
Q ss_pred CCCCceEEEEeecCHHH---------------------------------HHHHHHHHhhccccCChHHHHHHHHHhccc
Q 018172 190 GHAGSRIGWALVKDTEV---------------------------------ARKMTRFIELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 190 ~~~G~r~G~~~~~~~~~---------------------------------~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
+.+|.++|++++.+.+. ...........+...++.....+...+
T Consensus 213 gg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl--- 289 (431)
T PRK08248 213 GGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGL--- 289 (431)
T ss_pred CCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCc---
Confidence 99999999887732211 011111222233444444444333322
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcc----cccccccC-CCCCCcccccCCch-HHHHHHHHhhC
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEY----CNFTGKFT-NSHPGFAWLESKED-EDCEKLLRAER 310 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~~g 310 (360)
+-+....++-.++...+.+.|++++.+..+.+++.. +....... .+.+..+.+.++++ +.+.+.+.+-.
T Consensus 290 -----~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~ 364 (431)
T PRK08248 290 -----ETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGGVEAGKKLIDSVK 364 (431)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCC
Confidence 223344455567777899999999877654444321 11111111 23355677887654 44444443333
Q ss_pred eeee---CCC----------------------CCCCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 311 IMAR---GGR----------------------RFGADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 311 I~~~---pg~----------------------~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
+... -|. ..|..++.+|||++.+ +.+.+++.|.+.+++
T Consensus 365 l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE--d~~dL~~Dl~~Al~~ 427 (431)
T PRK08248 365 LFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSVGTE--AIDDILDDLRQAIRQ 427 (431)
T ss_pred cceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHHHh
Confidence 3221 121 0122356899999662 234455555555543
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-20 Score=172.49 Aligned_cols=287 Identities=14% Similarity=0.087 Sum_probs=189.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH----HHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP----AETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~----~~~~~~g~~~~~ 113 (360)
..+|++.+++++|. ++.++++ +++.++..++..++++||+ |+++.+.|.... ..+...|++++.
T Consensus 65 ~~~le~~lA~l~g~-------~~av~~~-sG~~Ai~~al~al~~~Gd~----Vl~~~~~y~~t~~~~~~~~~~~G~~v~~ 132 (389)
T PRK05968 65 VRAFEEMLAKLEGA-------EDARGFA-SGMAAISSTVLSFVEPGDR----IVAVRHVYPDAFRLFETILKRMGVEVDY 132 (389)
T ss_pred HHHHHHHHHHHhCC-------CcEEEEC-CHHHHHHHHHHHHhCCCCE----EEEeCCCchHHHHHHHHHHHHcCceEEE
Confidence 38999999999985 3455554 5568999999889999998 999999998754 455667999988
Q ss_pred ecCC-cccccc-CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-CCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK-NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ-YTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~-~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~-~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. -+++++|++.+|+||++...+ +.+.++|+++|+++|+|++|..+. ..++ ..+.++++.|+||.+
T Consensus 133 vd~~d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~--~~g~Divv~S~tK~l 210 (389)
T PRK05968 133 VDGRDEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPI--TLGVDLVIHSASKYL 210 (389)
T ss_pred eCCCCHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCch--hcCCcEEEeeccccc
Confidence 8754 333322 246899999999999998877 677888888999999999997543 2222 345689999999999
Q ss_pred CCCC-ceEEEEeecCHHHHHHHHHHHh-hccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 190 GHAG-SRIGWALVKDTEVARKMTRFIE-LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 190 ~~~G-~r~G~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
+.+| .+.|+++. ++++++.++.... ..+...++..+..+...++ . +....++-.++.+.+.+.|++++.
T Consensus 211 ~g~~~~~gG~i~~-~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~-------t-l~~r~~~~~~~a~~la~~L~~~p~ 281 (389)
T PRK05968 211 GGHSDTVAGVVAG-SKEHIARINAEAYPYLGAKLSPFEAWLLLRGLR-------T-LPLRMKAHEASALEIARRLKAHPV 281 (389)
T ss_pred cCCCCeEEEEEEE-CHHHHHHHHHHHHHhCCCCCChHHHHHHHcccC-------c-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8654 57898887 7888888876543 2334555555544433333 3 344444445567788889999887
Q ss_pred cccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCC----------------------CCC
Q 018172 268 FGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRF----------------------GAD 322 (360)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f----------------------~~~ 322 (360)
+..+.+++..-. ......+.+..+.+.+++. ..+.+.|+..++.+.-|... |..
T Consensus 282 v~~v~~p~l~~~-~~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~ 360 (389)
T PRK05968 282 VERVCHPALANH-PPAGLSGTSGLFSFIFREGIDVRAFADALKLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAARFGVS 360 (389)
T ss_pred ccEEECCCCCCC-hHHhCCCCceEEEEEECCHHHHHHHHHhCCccEEecCCCCCCceeeeCcccccccCCHHHHHhcCCC
Confidence 765543321100 0000112334566666533 56667777666665544322 223
Q ss_pred CCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 323 AKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 323 ~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
++.+|+|++.. +.+.+++.|++.+.+
T Consensus 361 ~~liR~SvGlE--~~~dl~~dl~~al~~ 386 (389)
T PRK05968 361 PRSVRLHVGLE--GTEALWADLEQALAA 386 (389)
T ss_pred CCeEEEEeccC--CHHHHHHHHHHHHHH
Confidence 57899999662 233445555555443
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=176.27 Aligned_cols=291 Identities=14% Similarity=0.127 Sum_probs=194.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~ 113 (360)
..+|++.++++.+. . ..++++++++|+.+++.+++++||+ |+++.++|.+.... +...|+++..
T Consensus 63 v~~lE~~la~leg~-------~-~av~~~SG~aAi~~al~all~~GD~----VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~ 130 (432)
T PRK06702 63 LAAFEQKLAELEGG-------V-GAVATASGQAAIMLAVLNICSSGDH----LLCSSTVYGGTFNLFGVSLRKLGIDVTF 130 (432)
T ss_pred HHHHHHHHHHHhCC-------C-cEEEECCHHHHHHHHHHHhcCCCCE----EEECCCchHHHHHHHHHHHHHCCCEEEE
Confidence 48999999999984 3 5788999999999999999999999 99999999977776 6778999998
Q ss_pred ecC--Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccc-
Q 018172 114 WDG--DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSK- 187 (360)
Q Consensus 114 ~~~--~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK- 187 (360)
++. |.+.++. +++||+|++.+|+||++.+.+ +.+.++|+++|+++|+|++|..+ +..-+-..+.+|++.|+||
T Consensus 131 vd~~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP-~~~~pl~~GADIvv~S~TKy 209 (432)
T PRK06702 131 FNPNLTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATP-YLCQAFEHGANIIVHSTTKY 209 (432)
T ss_pred ECCCCCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCch-hhCChhhcCCCEEEEccccc
Confidence 875 3345543 578999999999999999999 78888899999999999998632 1112236677899999999
Q ss_pred ----ccCCCCceE-----EEEeecCHHHHH---------------------HHH-HHHhhccccCChHHHHHHHHHhccc
Q 018172 188 ----CTGHAGSRI-----GWALVKDTEVAR---------------------KMT-RFIELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 188 ----~~~~~G~r~-----G~~~~~~~~~~~---------------------~l~-~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
..++.|.++ +|...++.++.+ ... ......+.+.+++....+...|+.
T Consensus 210 ~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~T- 288 (432)
T PRK06702 210 IDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLET- 288 (432)
T ss_pred cCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCc-
Confidence 666777776 555442222221 111 122223457777777777665552
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcc----cccccccC-CCCCCcccccCCch-HHHHHHHHhhC
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEY----CNFTGKFT-NSHPGFAWLESKED-EDCEKLLRAER 310 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~~g 310 (360)
++...++-+++...+.+.|++++.+..+.+++.. +....... .+.+..+.+.++++ +.+.+.+.+-.
T Consensus 289 -------l~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~ 361 (432)
T PRK06702 289 -------LHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVK 361 (432)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCc
Confidence 3333344468888999999999877655444321 11111112 23455677887643 44444443333
Q ss_pred eee---e----------CCC------------CCCCCCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 311 IMA---R----------GGR------------RFGADAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 311 I~~---~----------pg~------------~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
+.. . |.. ..|..++.+|||++.+ +.+.+++.|.+.+..-
T Consensus 362 l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlE--d~eDLi~Dl~~Al~~~ 425 (432)
T PRK06702 362 LATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVGIE--DVSDIIADLEAALVGG 425 (432)
T ss_pred cceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHHhcC
Confidence 321 1 111 0122356899998663 3455666666666543
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-20 Score=172.39 Aligned_cols=282 Identities=15% Similarity=0.108 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
.+|+++++++++. + ++++++|+|+++++++.++ +++||+ |+++.|+|..+...+...|++++.++++
T Consensus 36 ~~le~~la~~~g~-------~-~~v~~~sgt~al~lal~al~~~~Gd~----Viv~~~~~~~~~~~~~~~G~~~v~vd~~ 103 (379)
T PRK11658 36 QALEQAFCQLTGN-------Q-HAIAVSSATAGMHITLMALGIGPGDE----VITPSLTWVSTLNMIVLLGATPVMVDVD 103 (379)
T ss_pred HHHHHHHHHHhCC-------C-eEEEECCHHHHHHHHHHHcCCCCCCE----EEECCCcHHHHHHHHHHcCCEEEEEecC
Confidence 9999999999995 3 5788899999999999999 799998 9999999999999999999999999887
Q ss_pred cccccc---------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCc--CCCCCCccEEEecc
Q 018172 118 ANTFDK---------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTP--ITGAADHDIMLFTL 185 (360)
Q Consensus 118 ~~~~~~---------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~--~~~~~~~~i~~~S~ 185 (360)
.+++.. ++++++|+ |+||+|...+ +.+.++|+++|+++|+|++|+.+.... ..+..+. .++||
T Consensus 104 ~~~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~--~~~Sf 178 (379)
T PRK11658 104 RDTLMVTPEAIEAAITPRTKAII---PVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGT--AIFSF 178 (379)
T ss_pred CCcCCcCHHHHHHhcccCCeEEE---EeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCC--EEEeC
Confidence 654322 36788887 7778999987 678888998999999999998543211 1222332 45666
Q ss_pred ccccCCCCceEEEEeecCHHHHHHHHHHHhhccc--------------------cCC-hHHHHHHHHHhcccCCCchhHH
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI--------------------GVS-KESQLRAAKILGIVSDDYPNFF 244 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~--------------------~~~-~~~~~~~~~~l~~~~~~~~~~~ 244 (360)
++...+++.+.|++++.++++.+.++..+..+.. +.| .+....++..+.. .+.+
T Consensus 179 ~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~q-----l~~l 253 (379)
T PRK11658 179 HAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQ-----LAKL 253 (379)
T ss_pred CCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHH-----HHHH
Confidence 6544556668899988678998888765532210 111 1111122222221 1556
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCc-ccccccccCCCCCCcccccCC----chHHHHHHHHhhCeeeeCCC--
Q 018172 245 EYGRRLMSERWNMLRQVIRQSGVFGLPEYPLE-YCNFTGKFTNSHPGFAWLESK----EDEDCEKLLRAERIMARGGR-- 317 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gI~~~pg~-- 317 (360)
++..++-++..+.+.+.|++++...+..+... ..++. .+.+.++.. +.+.+.+.|+++||.+++..
T Consensus 254 ~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~~ 326 (379)
T PRK11658 254 EALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWH-------LFIIRVDEERCGISRDALMEALKERGIGTGLHFRA 326 (379)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEE-------EEEEEECCccccCCHHHHHHHHHHCCCCCcccCcC
Confidence 77777777777788888887764333222210 00000 001222211 12778888999999876321
Q ss_pred --C---CC----C---------CCCeEEEEecC--ChHHHHHHHHHHHHHHh
Q 018172 318 --R---FG----A---------DAKYARVSMLS--REEIFNIFLERLSAIQG 349 (360)
Q Consensus 318 --~---f~----~---------~~~~~R~s~~~--~~e~~~~~~~~l~~~~~ 349 (360)
. |. . ....+.+.+.. ++|+++..+++|++++.
T Consensus 327 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~~ 378 (379)
T PRK11658 327 AHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIAG 378 (379)
T ss_pred cccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 0 00 0 02235555543 89999999999998764
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=175.68 Aligned_cols=274 Identities=15% Similarity=0.133 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc-CCCCCCCceEEEeCCCCCCcHH-HHHHhCCe------
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS-SPGGPEPISVVSAAPYYSQYPA-ETDYLRSG------ 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~-~~gd~~~~~vl~~~p~~~~~~~-~~~~~g~~------ 110 (360)
.++++.+++++... .+.+.+++++++++++..++.... .+|+. +|+..+++|..... .....+..
T Consensus 70 ~~~~~~la~~l~~~----~~~~~~~~~~sG~~a~~~A~~~a~~~~g~~---~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~ 142 (377)
T PRK02936 70 NSLQEEVASLLAEN----SAGDLVFFCNSGAEANEAALKLARKHTGKS---KIVTFEQSFHGRTFGTMSATGQEKIKEGF 142 (377)
T ss_pred CHHHHHHHHHHHhc----CCCCEEEEeCCcHHHHHHHHHHHHHhcCCC---eEEEECCCcCCCcHHhhhccCCccccccC
Confidence 44555555554421 112479999999999999988653 23432 38888888875532 22222221
Q ss_pred ------eeeecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCC--cCC-
Q 018172 111 ------LYKWDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYT--PIT- 173 (360)
Q Consensus 111 ------~~~~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~--~~~- 173 (360)
+..++. |.+.+.. .+++++|++..+++++|.... +.+.++|+++|+++|+||+|.+.... ...
T Consensus 143 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~ 222 (377)
T PRK02936 143 GPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAY 222 (377)
T ss_pred CCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHH
Confidence 112221 2222222 356889999989999998743 46678899999999999999742211 111
Q ss_pred C--CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 174 G--AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 174 ~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
. ....+ +.++||.++ +|+|+||+++ ++++.+.+.......+++.|++.|.++.++++.+... .++ +.+
T Consensus 223 ~~~~~~~d--i~t~sK~l~-~G~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~--~~~----~~~ 292 (377)
T PRK02936 223 EQFGLDPD--IVTVAKGLG-NGIPVGAMIG-KKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQP--SFL----EEV 292 (377)
T ss_pred HhhCCCCc--EEEEccccc-CCCccEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhc--cHH----HHH
Confidence 1 11112 347999999 9999999998 8999988865544456788999999999999854321 344 445
Q ss_pred HHHHHHHHHHHHh----cCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCCCCCeE
Q 018172 252 SERWNMLRQVIRQ----SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGADAKYA 326 (360)
Q Consensus 252 ~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~~~~~~ 326 (360)
+++.+++.+.|++ ++.+... .+.+.++|+.+++. ..+.+.|.++||.+.|+. .+++
T Consensus 293 ~~~~~~l~~~L~~~~~~~~~~~~v--------------~~~g~~~~i~~~~~~~~~~~~l~~~gv~v~~~g-----~~~l 353 (377)
T PRK02936 293 QEKGEYFLQKLQEELEHLECVKNI--------------RGKGLMIGIECTEEVAPVIEQLREEGLLVLSAG-----PNVI 353 (377)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEeE--------------eecceEEEEEecchHHHHHHHHHHCCeEEecCC-----CCEE
Confidence 5555555555554 3221111 12334788888655 677788899999998842 4699
Q ss_pred EEEe--cCChHHHHHHHHHHHHHH
Q 018172 327 RVSM--LSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 327 R~s~--~~~~e~~~~~~~~l~~~~ 348 (360)
||++ ..+++++++++++|.+++
T Consensus 354 Ri~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 354 RLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred EEECCcccCHHHHHHHHHHHHHhC
Confidence 9995 449999999999998764
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-20 Score=171.99 Aligned_cols=252 Identities=14% Similarity=0.092 Sum_probs=167.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH----HHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA----ETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~----~~~~~g~~~~~ 113 (360)
...|+++++++.|. ++.+++++| +.++..++ .++++||+ |++++|.|..... .+...|++++.
T Consensus 52 ~~~Le~~la~l~g~-------~~al~~~SG-~~Al~~~l-~~l~pGd~----Vi~~~~~y~~t~~~~~~~~~~~gi~v~~ 118 (380)
T PRK06176 52 RFALEELIADLEGG-------VKGFAFASG-LAGIHAVF-SLFQSGDH----VLLGDDVYGGTFRLFDKVLVKNGLSCTI 118 (380)
T ss_pred HHHHHHHHHHHhCC-------CCEEEECCH-HHHHHHHH-HHcCCCCE----EEEcCCChhHHHHHHHHHHHhcCeEEEE
Confidence 48999999999984 345666665 66887666 57789998 9999999986654 34556888887
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. ++++++|++.+|+||||.+.+ +.+.++|+++|+++|+|++|..+.. ..+...+.+++++|++|.+
T Consensus 119 vd~~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~-~~p~~~gaDivv~S~tK~l 197 (380)
T PRK06176 119 IDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYY-QNPLLLGADIVVHSGTKYL 197 (380)
T ss_pred cCCCCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccccc-CCccccCCCEEEecCceec
Confidence 7653 344433 467999999999999999998 6788888889999999999985422 1223457789999999999
Q ss_pred CCCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 GHAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+.+| .-.|++++.++++.+.+...+...+...++.....+...++ -+....++..++...+.+.|.+++.+
T Consensus 198 ~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~--------tl~~R~~~~~~~a~~la~~L~~~p~v 269 (380)
T PRK06176 198 GGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIK--------TLGLRMEAHQKNALCVAEFLEKHPKV 269 (380)
T ss_pred cCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccC--------cHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 7555 34677777567788888777765455555555444433222 22333333345667778888888766
Q ss_pred ccCCCCCcc----cccccccCCCCCCcccccCCchHHHHHHHHhhCe
Q 018172 269 GLPEYPLEY----CNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERI 311 (360)
Q Consensus 269 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI 311 (360)
..+.+++.. +........+.+..+.+.+++.+.+.+.+.+-.+
T Consensus 270 ~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~~ 316 (380)
T PRK06176 270 EKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKL 316 (380)
T ss_pred eEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCCc
Confidence 554443311 1111111234455677888654444444444343
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-20 Score=174.46 Aligned_cols=269 Identities=10% Similarity=-0.005 Sum_probs=184.9
Q ss_pred CCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCee----eeecCCc------ccccc
Q 018172 58 DGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGL----YKWDGDA------NTFDK 123 (360)
Q Consensus 58 ~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~----~~~~~~~------~~~~~ 123 (360)
++++|++|+|+|++++.++.+++++++. +..|+++..+|++.... ++..|+++ +.++.+. +.+..
T Consensus 85 ~~~~v~~~~~~t~~l~~~~~~~~~~~~~-~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~ 163 (406)
T TIGR01814 85 KEDEVVVMNTLTINLHLLLASFYKPTPK-RYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILD 163 (406)
T ss_pred CCCcEEEeCCchHHHHHHHHHhcCCcCC-ccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHH
Confidence 4568999999999999999998766531 11388888999985443 44568876 4554432 12211
Q ss_pred -----CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc-CCCCceE
Q 018172 124 -----NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT-GHAGSRI 196 (360)
Q Consensus 124 -----~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~r~ 196 (360)
+++|++|++++++|.||..++ +.+.++|+++|+++++|++++.+..+......+.++++.|.+|.+ +.|| .
T Consensus 164 ~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG--~ 241 (406)
T TIGR01814 164 TIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG--A 241 (406)
T ss_pred HHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC--e
Confidence 368999999999999999998 778888888999999999999877665556678899999999976 4466 4
Q ss_pred EEEeecCHHHHHHHHHHH-----------------------hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHH
Q 018172 197 GWALVKDTEVARKMTRFI-----------------------ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 197 G~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
|.++. +... +.+.... .+...++|.+...++.++++.+.. ..+++.+++..+
T Consensus 242 ~l~v~-~~~~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~---~g~~~i~~~~~~ 316 (406)
T TIGR01814 242 GAFVH-EKHA-HTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQ---AGMEALRKKSLL 316 (406)
T ss_pred EEEEe-hhhh-hhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHh---cCHHHHHHHHHH
Confidence 43333 3332 2221100 001233556666677767776533 447888889999
Q ss_pred HHHHHHHHHHhcC----CcccCCCCCcccccccccCCCCCCcccccCC-chHHHHHHHHhhCeeeeCCCCCCCCCCeEEE
Q 018172 254 RWNMLRQVIRQSG----VFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-EDEDCEKLLRAERIMARGGRRFGADAKYARV 328 (360)
Q Consensus 254 ~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~ 328 (360)
..+++.+.|.++. ++.+..+.... ..+..+.+.++ +.+++.+.|.++||.+... .++.+|+
T Consensus 317 l~~~l~~~l~~~~~~~~~~~i~~~~~~~---------~r~~~v~~~~~~~~~~~~~~L~~~gi~v~~~-----~~~~iRi 382 (406)
T TIGR01814 317 LTDYLEELIKARCGGPPVLTIITPRDHA---------QRGCQLSLTHPVPGKAVFQALIKRGVIGDKR-----EPSVIRV 382 (406)
T ss_pred HHHHHHHHHHhhcCCCCceEEeCCCChh---------hcCCeEEEEecCCHHHHHHHHHHCCEEEecc-----CCCeEEE
Confidence 9999999987752 34443332100 11223445555 4577888888999987531 2468999
Q ss_pred Eec-C--ChHHHHHHHHHHHHHH
Q 018172 329 SML-S--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 329 s~~-~--~~e~~~~~~~~l~~~~ 348 (360)
|++ . +++|+++++++|++++
T Consensus 383 S~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 383 APVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred echhccCCHHHHHHHHHHHHHHh
Confidence 984 3 8999999999999875
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=172.10 Aligned_cols=290 Identities=14% Similarity=0.116 Sum_probs=183.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~ 113 (360)
..+|+++++++.+. + ..++++++++++..++..++++||+ |+++.+.|......+.. .|.++..
T Consensus 60 ~~~Le~~lA~l~g~-------~-~~l~~ssG~~Ai~~al~al~~~Gd~----Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~ 127 (425)
T PRK06084 60 NDVLEQRVAALEGG-------V-GALAVASGMAAITYAIQTIAEAGDN----IVSVAKLYGGTYNLLAHTLPRIGIETRF 127 (425)
T ss_pred HHHHHHHHHHHhCC-------C-ceeEehhHHHHHHHHHHHHhCCCCE----EEEeCCCcchHHHHHHHhcccceeEEEE
Confidence 48999999999984 3 3556677789999999999999998 99999999976655543 4677666
Q ss_pred ecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++. |.+.+.. ++++++|++++|+||||.+++ +.+.++|+++++++|+|++|..+... .+...+.+++++|++|.+
T Consensus 128 ~d~~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~-~p~~~gaDivv~S~tK~l 206 (425)
T PRK06084 128 AAHDDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLC-RPFEHGADIVVHSLTKYI 206 (425)
T ss_pred ECCCCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccC-ChhhcCCCEEEECchhcc
Confidence 653 3344433 467899999999999999998 67788888899999999999854321 122456789999999999
Q ss_pred CCCCceEEEEeecCHHH--HH----------------------------HH----HHHHhhccccCChHHHHHHHHHhcc
Q 018172 190 GHAGSRIGWALVKDTEV--AR----------------------------KM----TRFIELGSIGVSKESQLRAAKILGI 235 (360)
Q Consensus 190 ~~~G~r~G~~~~~~~~~--~~----------------------------~l----~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (360)
+.+|.++|.+++.+..+ .+ .+ .......+...++.....+ +..
T Consensus 207 ~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~---lrg 283 (425)
T PRK06084 207 GGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLI---LQG 283 (425)
T ss_pred cccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHH---HcC
Confidence 88899999877732211 00 00 0011112333444433333 333
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcc----cccccccCCC-CCCcccccCCch-HHHHHHHHhh
Q 018172 236 VSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEY----CNFTGKFTNS-HPGFAWLESKED-EDCEKLLRAE 309 (360)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~l~~~ 309 (360)
+ +-+....++-+++...+.+.|++++.+..+.+++.. +........+ .+..+.+.++++ +.+.+.+.+-
T Consensus 284 l-----~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~~~~~~~~f~~~l 358 (425)
T PRK06084 284 L-----ETLALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKGGQAAGARFIDAL 358 (425)
T ss_pred c-----CcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecCCHHHHHHHHHhC
Confidence 2 334445555567777888999999876654444321 1111111123 355677777544 3333333333
Q ss_pred Ceee---eCCC----------------------CCCCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 310 RIMA---RGGR----------------------RFGADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 310 gI~~---~pg~----------------------~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
.+.. .-|. ..|..++.+|||++.+ +.+.+++.|.+.+.+
T Consensus 359 ~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~svGlE--d~~dLi~dl~~Al~~ 422 (425)
T PRK06084 359 KLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLSIGIE--HIDDIIADLAQALDA 422 (425)
T ss_pred CcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHHHh
Confidence 3322 1111 1122356899999662 344556666666554
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-20 Score=171.32 Aligned_cols=274 Identities=16% Similarity=0.118 Sum_probs=181.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeec-C
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWD-G 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~-~ 116 (360)
+.++|++++++++. ++.+++++|. .++..++..+.++||. |++..-.|.+....+.......+.++ .
T Consensus 58 ~~~~e~~la~~~~~-------~~~l~~~sG~-~a~~~~~~~~~~~~d~----ii~d~~~H~sv~~~~~~~~~~~~~~~~~ 125 (370)
T PRK05937 58 LDDLEHKIAHFHGA-------PEAFIVPSGY-MANLGLCAHLSSVTDY----VLWDEQVHISVVYSLSVISGWHQSFRHN 125 (370)
T ss_pred HHHHHHHHHHHhCC-------CeEEEECChH-HHHHHHHHHhCCCCCE----EEEEhhhhHHHHHHHHHcCCceEEecCC
Confidence 48999999999995 3457777776 4444556666667776 77778888888888777654444444 3
Q ss_pred Ccccccc--------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCC-------CCCCccE
Q 018172 117 DANTFDK--------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPIT-------GAADHDI 180 (360)
Q Consensus 117 ~~~~~~~--------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~-------~~~~~~i 180 (360)
|.+.++. .+++++|++++++|+||.+.+ +++.++|+++++++++|++|+.+.+.... +..+.++
T Consensus 126 d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~ 205 (370)
T PRK05937 126 DLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYA 205 (370)
T ss_pred CHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcE
Confidence 3333222 134567788999999999998 78888898899999999999864332211 1122346
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHh--hccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIE--LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
.+.||||.+|+.| +.++. .++..+.+..... ..+.+.+++...++.++++.+.+. .+..++++++.++++
T Consensus 206 ~~~tlsK~~g~~G---~~vl~-~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~----~~~~~~~l~~l~~~l 277 (370)
T PRK05937 206 VLVTYSKALGSMG---AALLS-SSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQE----GELARKQLFRLKEYF 277 (370)
T ss_pred EEEechhhhhcCc---eEEEc-CHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhC----cHHHHHHHHHHHHHH
Confidence 7899999999777 33555 5665555543211 123346666666666667655322 245567778888888
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC--ChHH
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS--REEI 336 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~--~~e~ 336 (360)
.+.|.... + +.. ..+.+.....+.+.+.|.++||.+... .+ ...+++|+|+.. ++||
T Consensus 278 ~~~l~~~~------~-~~~------------~~i~~~~~~~~~~~~~L~~~gi~v~~~-~~-~~~~~iRis~~~~~t~ed 336 (370)
T PRK05937 278 AQKFSSAA------P-GCV------------QPIFLPGISEQELYSKLVETGIRVGVV-CF-PTGPFLRVNLHAFNTEDE 336 (370)
T ss_pred HHhcCCCC------C-CCE------------EEEEeCChhHHHHHHHHHHCCeeEEee-CC-CCCCEEEEEcCCCCCHHH
Confidence 77765431 0 000 012232222377888899999988642 12 235689999975 9999
Q ss_pred HHHHHHHHHHHHhchh
Q 018172 337 FNIFLERLSAIQGGSI 352 (360)
Q Consensus 337 ~~~~~~~l~~~~~~~~ 352 (360)
+++++++|.+++++..
T Consensus 337 id~l~~~L~~~~~~~~ 352 (370)
T PRK05937 337 VDILVSVLATYLEKYQ 352 (370)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999987643
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-20 Score=174.45 Aligned_cols=264 Identities=14% Similarity=0.064 Sum_probs=175.0
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-------CCCCCCceEEEeCCCCCCcHHHHHHhC-------------CeeeeecC-Cc
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-------PGGPEPISVVSAAPYYSQYPAETDYLR-------------SGLYKWDG-DA 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-------~gd~~~~~vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~-~~ 118 (360)
+.+++++++++++..+++.... .+. .+++..+-+|......+...+ .+++.++. |.
T Consensus 98 ~~~~~~~sGseA~e~a~klar~~~~~~~~~~~---~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 174 (403)
T PRK05093 98 ERVFFANSGAEANEAAFKLARRYACDRHGPEK---TEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDL 174 (403)
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHhhcCCCCC---CeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCH
Confidence 4799999999999999886621 122 137777777766543322211 12223322 22
Q ss_pred ccccc--CCCeeEEEEcCCCCCCcccc--h----HHHHHHhhhcCcEEEEeecccCCCCCc--CC-CCCCccEEEecccc
Q 018172 119 NTFDK--NNGAYIEVVNSPNNPDGTIR--E----AVLAKVNRSAEGKLIHDLAYYWPQYTP--IT-GAADHDIMLFTLSK 187 (360)
Q Consensus 119 ~~~~~--~~~~~~i~~~~p~NPtG~~~--~----~~~~~~~~~~~~~li~D~ay~~~~~~~--~~-~~~~~~i~~~S~sK 187 (360)
+.++. ++++++|+++ |.||+|-.+ + +.+.++|+++|+++|+||+|.+..... .. ...+...-+.||||
T Consensus 175 ~~l~~~l~~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK 253 (403)
T PRK05093 175 AAVKAVIDDHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAK 253 (403)
T ss_pred HHHHHHhcCCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEecc
Confidence 33322 3467777777 888887664 3 467788999999999999998422111 11 11111122679999
Q ss_pred ccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 188 CTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 188 ~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
+++ +|+|+||+++ ++++++.+.......+++.+++.|.++.++|+.+.. ++.++.++++++++.+.|+++..
T Consensus 254 ~l~-~G~rig~vv~-~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~------~~~~~~~~~~~~~l~~~L~~~~~ 325 (403)
T PRK05093 254 ALG-GGFPIGAMLT-TAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINT------PEVLEGVKARRQRFVDGLQKINQ 325 (403)
T ss_pred ccc-CCcceEEEEE-cHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh------ccHHHHHHHHHHHHHHHHHHHHh
Confidence 999 9999999999 899999887644445678899999999998875432 24457888888999998887631
Q ss_pred cccCCCCCcccccccccCCCCCCcccccCCc-----hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHH
Q 018172 268 FGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----DEDCEKLLRAERIMARGGRRFGADAKYARVSM--LSREEIFNIF 340 (360)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~ 340 (360)
..... ...+..+.++|+.++. ...+...|.++||.+.|+ ..+++|+++ ..++++++++
T Consensus 326 -~~~~~---------~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~-----g~~~lRl~~~~~~~~~~i~~~ 390 (403)
T PRK05093 326 -KYGVF---------SEIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVA-----GPDVLRFAPSLVIEEADIDEG 390 (403)
T ss_pred -hCCCe---------EeEeeCceEEEEEecCcchhHHHHHHHHHHHCCeEEecC-----CCCEEEEeCCCCCCHHHHHHH
Confidence 10000 0112334467777642 245566777789999874 246999965 3389999999
Q ss_pred HHHHHHHHhc
Q 018172 341 LERLSAIQGG 350 (360)
Q Consensus 341 ~~~l~~~~~~ 350 (360)
+++|.+++.+
T Consensus 391 ~~~l~~~l~~ 400 (403)
T PRK05093 391 LARFEKAVAK 400 (403)
T ss_pred HHHHHHHHHH
Confidence 9999998864
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-20 Score=172.97 Aligned_cols=276 Identities=12% Similarity=0.052 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc----CCCCCCCceEEEeCCCCCCcHH---HHHHhCCee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS----SPGGPEPISVVSAAPYYSQYPA---ETDYLRSGL 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~----~~gd~~~~~vl~~~p~~~~~~~---~~~~~g~~~ 111 (360)
.++++.++++++ . +.+++++| +++...++..+. .+|+. .+++.+..|..... .....+.++
T Consensus 94 ~~l~~~la~~~~-------~-~~~~~~sG-~~a~~~ai~~~~~~~~~~~~~---~vi~~~~~~H~s~~~~~~~~~~~~~v 161 (402)
T PRK07505 94 KDLEEALSELFG-------A-SVLTFTSC-SAAHLGILPLLASGHLTGGVP---PHMVFDKNAHASLNILKGICADETEV 161 (402)
T ss_pred HHHHHHHHHHhC-------C-CEEEECCh-HHHHHHHHHHHHhcccCCCCC---CEEEEchhhhHhHHhhhhhhhcCCeE
Confidence 677777777766 2 34556655 567666665432 22332 26666655543221 112235566
Q ss_pred eeecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCC---CC-C----cCCC--CCC
Q 018172 112 YKWDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWP---QY-T----PITG--AAD 177 (360)
Q Consensus 112 ~~~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~---~~-~----~~~~--~~~ 177 (360)
+.++. |.+.+.. +++++++++++|+||||.+.+ +.+.++|+++++++|+||+|... .. . ...+ ..+
T Consensus 162 ~~~~~~d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d 241 (402)
T PRK07505 162 ETIDHNDLDALEDICKTNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNE 241 (402)
T ss_pred EEeCCCCHHHHHHHHhcCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCC
Confidence 76663 3333332 345789999999999999988 67888999999999999998521 11 1 1112 467
Q ss_pred ccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhcccc--CChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 018172 178 HDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIG--VSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERW 255 (360)
Q Consensus 178 ~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (360)
+++++.|+||.++.+| ||+++.++++++.+.......+++ .++.++.++.++++...+ +.+.+.++.++++.
T Consensus 242 ~~i~~~s~sK~~~~~G---g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~---~~~~~~~~~l~~~~ 315 (402)
T PRK07505 242 RTIIAASLGKAFGASG---GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLS---EELDQLQQKLQNNI 315 (402)
T ss_pred CeEEEEechhhhhccC---eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhc---cCcHHHHHHHHHHH
Confidence 7899999999999776 888755788888887765443333 445666666666653322 34444555565555
Q ss_pred HHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEe
Q 018172 256 NMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGGRRFGA--DAKYARVSM 330 (360)
Q Consensus 256 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~ 330 (360)
..+.+.+... ..+.+. .+.++.+++ ...+.+.|.++||.++++..+.. .++++||++
T Consensus 316 ~~~~~~~~~~-------~~g~~~-----------~i~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~ 377 (402)
T PRK07505 316 ALFDSLIPTE-------QSGSFL-----------PIRLIYIGDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMF 377 (402)
T ss_pred HHHHHHHHhc-------CCCCCC-----------CEEEEEeCCHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEec
Confidence 5443332111 111110 012333332 25677778899999999744332 236899999
Q ss_pred cC--ChHHHHHHHHHHHHHHhc
Q 018172 331 LS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 331 ~~--~~e~~~~~~~~l~~~~~~ 350 (360)
.. ++|++++++++|.+++.+
T Consensus 378 ~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 378 RASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred CccCCHHHHHHHHHHHHHHHHh
Confidence 64 999999999999998754
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-19 Score=168.83 Aligned_cols=286 Identities=12% Similarity=0.058 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~~ 114 (360)
.+|++.++++.+ .+ +.++++|+++++..++ .++++||+ |+++.|.|..+... +...|++++.+
T Consensus 136 ~aLE~~lA~leg-------~e-~ai~~~SG~aAi~~il-~ll~~GD~----VI~~~~~y~~t~~ll~~~l~~~G~~v~~v 202 (464)
T PLN02509 136 DALESLLAKLDK-------AD-RAFCFTSGMAALSAVT-HLIKNGEE----IVAGDDVYGGSDRLLSQVVPRSGVVVKRV 202 (464)
T ss_pred HHHHHHHHHHhC-------CC-EEEEeCcHHHHHHHHH-HHhCCCCE----EEEcCCchhhHHHHHHHHHHHCCeEEEEe
Confidence 666666666665 33 5666677788887655 57899998 99999999988744 44679998887
Q ss_pred cCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccccC
Q 018172 115 DGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTG 190 (360)
Q Consensus 115 ~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~~ 190 (360)
+.. .+.+.. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+.. ..+...+.+++++|++|.++
T Consensus 203 d~~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~-~~pl~~gaDivv~S~tK~l~ 281 (464)
T PLN02509 203 NTTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL-SRPLELGADIVMHSATKFIA 281 (464)
T ss_pred CCCCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc-CChhhcCCcEEEecCccccc
Confidence 643 233333 568999999999999999877 6778888889999999999875432 12224567899999999886
Q ss_pred CCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 018172 191 HAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFG 269 (360)
Q Consensus 191 ~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 269 (360)
-+| .-.|.+++.++.+.+.+...+...+...++.. ++..+..+ +.+....++.+++.+.+.+.|++++.+.
T Consensus 282 G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~---A~l~lr~L-----~tL~~R~~r~~~nA~~la~~L~~~p~V~ 353 (464)
T PLN02509 282 GHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFD---CWLCLRGI-----KTMALRIEKQQENARKIAMYLSSHPRVK 353 (464)
T ss_pred CCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHH---HHHHHhhh-----hhHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 433 33577776566666666655543333344444 33333322 4566677778888899999999998766
Q ss_pred cCCCCCcc----cccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCC--------------------------
Q 018172 270 LPEYPLEY----CNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRF-------------------------- 319 (360)
Q Consensus 270 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f-------------------------- 319 (360)
.+.++|-. +........+.+..+.+.+.+.+.+.+.+..-.+. ..+..+
T Consensus 354 ~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~-~~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~ 432 (464)
T PLN02509 354 KVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYF-SIAVSFGSVKSLISMPCFMSHASIPAEVREAR 432 (464)
T ss_pred EEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHHHcCCcc-eEcccCCCCCceeeCCcccccccCCHHHHHhc
Confidence 54444311 11111112234445666664334444444333322 111111
Q ss_pred CCCCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 320 GADAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 320 ~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
|..++.+|+|++.+ +.+.+++.|.+.++
T Consensus 433 Gi~~~liRlSvGlE--~~~DLi~Dl~~Al~ 460 (464)
T PLN02509 433 GLTEDLVRISAGIE--DVDDLISDLDIAFR 460 (464)
T ss_pred CCCCCeEEEEeccC--CHHHHHHHHHHHHc
Confidence 22356899999663 34555666666654
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=169.90 Aligned_cols=259 Identities=14% Similarity=0.080 Sum_probs=181.4
Q ss_pred cEEEcCChHHHHHHHHHhhc--CCCCCCCceEEEeCCCCCCc-HHHHHHhCCee---------eee---c-CCcccccc-
Q 018172 61 HIVIGTGSTQLYQAALYALS--SPGGPEPISVVSAAPYYSQY-PAETDYLRSGL---------YKW---D-GDANTFDK- 123 (360)
Q Consensus 61 ~i~~t~G~t~~l~~~~~~l~--~~gd~~~~~vl~~~p~~~~~-~~~~~~~g~~~---------~~~---~-~~~~~~~~- 123 (360)
.+++++++++++..++.... ..++. |++.+..|... ...+...|.+. ..+ + .|.+.+..
T Consensus 86 ~~~~~~SGseA~~~Al~~ar~~~~~~~----vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~ 161 (375)
T PRK04260 86 LAFFCNSGAEANEAAIKIARKATGKQE----IITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKAL 161 (375)
T ss_pred EEEEcCccHHHHHHHHHHHHHhcCCCe----EEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHh
Confidence 36889999999998888763 22333 88888887754 33333322211 111 1 12233322
Q ss_pred -CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCC--cCC---CCCCccEEEeccccccCCC
Q 018172 124 -NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYT--PIT---GAADHDIMLFTLSKCTGHA 192 (360)
Q Consensus 124 -~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~--~~~---~~~~~~i~~~S~sK~~~~~ 192 (360)
++++.+|++..++|++|.+.+ +.+.++|+++|+++|+||+|.+.... ... .....+ +.||||.++ +
T Consensus 162 l~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pd--i~t~sK~l~-~ 238 (375)
T PRK04260 162 VNKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPD--IFTLAKGLA-N 238 (375)
T ss_pred cCCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCC--EEEeccccc-C
Confidence 356778999999999998855 46778899999999999999742111 111 111122 458999999 8
Q ss_pred CceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCC
Q 018172 193 GSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPE 272 (360)
Q Consensus 193 G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 272 (360)
|+|+||+++ ++++.+.+.......+++.+++.+.++.++++.+... .++++.++..+.+++.+.+.+.+++.+..
T Consensus 239 G~~ig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 313 (375)
T PRK04260 239 GVPVGAMLA-KSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTA--GFLEQALENGNYLQEQLQKALQDKETVTT-- 313 (375)
T ss_pred CcceEEEEE-cHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHhhCCCeeE--
Confidence 999999999 7888888865445567788999999999999865443 77888888888888888888776642221
Q ss_pred CCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC--ChHHHHHHHHHHHHHH
Q 018172 273 YPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGADAKYARVSMLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~ 348 (360)
.++.+.++|++++.. ..+.+.+.++||.+.|+ ..+.+|+++.. +++++++++++|++++
T Consensus 314 ------------~~~~g~~~~~~~~~~~~~~~~~l~~~Gi~v~~~-----~~~~lR~~~~~~~t~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 314 ------------VRGLGYMIGIETTADLSQLVEAARDKGLIVLTA-----GTNVIRLLPPLTLTKEEIEQGIAILSEVF 375 (375)
T ss_pred ------------EeccceEEEEEecCcHHHHHHHHHhCCCEEecC-----CCCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence 113445788887543 66778888999999874 24689999833 8999999999998763
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-19 Score=165.45 Aligned_cols=279 Identities=14% Similarity=0.108 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
.++++.++++++. +++++|+|+++++.+++..+ +++||+ |+++.|+|..+...+...|++++.++++
T Consensus 34 ~~~e~~la~~~g~--------~~~v~~~sgt~al~~~l~~~~~~~Gd~----Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 34 RRCQQWLEQRFGS--------AKVLLTPSCTAALEMAALLLDIQPGDE----VIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred HHHHHHHHHHhCC--------CeEEEECCHHHHHHHHHHHhCCCCCCE----EEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 5666667777663 47999999999999887766 689998 9999999999999999999999999877
Q ss_pred cccccc---------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-CCcCCCCCCccEEEeccc
Q 018172 118 ANTFDK---------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ-YTPITGAADHDIMLFTLS 186 (360)
Q Consensus 118 ~~~~~~---------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~-~~~~~~~~~~~i~~~S~s 186 (360)
.+++.. ++++++|+++ ||+|...+ +.+.++|+++|+++|+|++|+.+. +.........++.++||+
T Consensus 102 ~~~~~~d~~~le~~i~~~tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~ 178 (375)
T PRK11706 102 PDTMNIDETLIEAAITPKTRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFH 178 (375)
T ss_pred CCcCCcCHHHHHHhcCCCCeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCC
Confidence 665332 3578998865 57998877 677788888999999999998543 111111111245566665
Q ss_pred --cccCCCCceEEEEeecCHHHHHHHHHHHhhc-----------------cccCChHHH-HHHHHHhcccCCCchhHHHH
Q 018172 187 --KCTGHAGSRIGWALVKDTEVARKMTRFIELG-----------------SIGVSKESQ-LRAAKILGIVSDDYPNFFEY 246 (360)
Q Consensus 187 --K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~ 246 (360)
|.++ +|.+.++++. ++++.+.++..+..+ ..+.|...+ ..++..+..+ +.+++
T Consensus 179 ~~K~l~-~g~gG~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql-----~~l~~ 251 (375)
T PRK11706 179 ETKNYT-AGEGGALLIN-DPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQL-----EAADR 251 (375)
T ss_pred CCcccc-ccCCeEEEEC-CHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHH-----HHHHH
Confidence 9998 6888777765 899998887766431 122333222 2222223322 44566
Q ss_pred HHHHHHHHHHHHHHHHHhcC---CcccCC-CCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCCC-
Q 018172 247 GRRLMSERWNMLRQVIRQSG---VFGLPE-YPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGGRR- 318 (360)
Q Consensus 247 ~~~~~~~~~~~l~~~l~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~~- 318 (360)
..++.+++.+++.+.|.+++ .+..+. +.+...+ ..++++.+++ .+.+.+.|.++||.++....
T Consensus 252 ~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~r~~l~~~L~~~gI~~~~~~~p 322 (375)
T PRK11706 252 INQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHN---------AHMFYIKLRDLEDRSALINFLKEAGIMAVFHYIP 322 (375)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCcee---------eEEEEEEECCcCCHHHHHHHHHHCCCCccccCCc
Confidence 66666677777777787764 233221 2111111 1134555543 28889999999999764310
Q ss_pred ---------CCC-----------CCCeEEEEecC--ChHHHHHHHHHHHHHH
Q 018172 319 ---------FGA-----------DAKYARVSMLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 319 ---------f~~-----------~~~~~R~s~~~--~~e~~~~~~~~l~~~~ 348 (360)
++. ....+.+.+.. ++++++..+++|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 323 LHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred cCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 000 02235555543 7899999999998865
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-20 Score=166.24 Aligned_cols=295 Identities=14% Similarity=0.075 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHHHh---CCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETDYL---RSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~~~---g~~~~~~ 114 (360)
++.|+.+|+++++ ++.+|++|+|+|+++++++..+ ...++...+.|++..-.|++....++.+ |.+++.+
T Consensus 88 E~aR~~VAklInA------d~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~l 161 (428)
T KOG1549|consen 88 EAAREQVAKLINA------DPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYL 161 (428)
T ss_pred HHHHHHHHHHhCC------CCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEe
Confidence 8999999999997 4556999999999999999988 3345511124999999999998776664 8999988
Q ss_pred cCCcccccc--------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecc
Q 018172 115 DGDANTFDK--------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTL 185 (360)
Q Consensus 115 ~~~~~~~~~--------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~ 185 (360)
|.+.+++.. +++|+++.+...||.+|+.+| +++..+|+++++.++.|.|++-+..+......+.+++..|.
T Consensus 162 pv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~ 241 (428)
T KOG1549|consen 162 PVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISA 241 (428)
T ss_pred ccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeec
Confidence 877555433 579999999999999999999 88888999999999999999988888888889999999999
Q ss_pred ccccCCCCceEEEEeecC--HHHH--HHH---HHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 186 SKCTGHAGSRIGWALVKD--TEVA--RKM---TRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~--~~~~--~~l---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
+|.+|++| +|++.+++ +.+. ..+ ......+..+.+.+.+....++.+... .++......+.+..+.+
T Consensus 242 HK~ygp~~--iGaLYvr~~~~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~~----~~~~~~~~~~~~~~~~l 315 (428)
T KOG1549|consen 242 HKIYGPPG--IGALYVRRKRPRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEFVN----KEMAYDEAIIKRLSEKL 315 (428)
T ss_pred ccccCCCc--ceEEEEccCCCcccccCcccCCccccccccCCcCchhhhhhHHHHHHHH----hhcchhHHHHHHHHHHH
Confidence 99999999 89888843 1111 001 122233445566666666666555443 23333333333344555
Q ss_pred HHHHHh-cCCcccCCCCCcccccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeC------------CCCCCC
Q 018172 259 RQVIRQ-SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARG------------GRRFGA 321 (360)
Q Consensus 259 ~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~p------------g~~f~~ 321 (360)
...+.. .+......+.... ++...++-.. ...+ .++.+.....|..+.. |..++.
T Consensus 316 l~~i~~~~~~~~~~G~~~~~-------~~~~~~~~~~-~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~ 387 (428)
T KOG1549|consen 316 LMGIGQSLPEVTLNGSGKSR-------YPGLVSLSFP-YVEGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDL 387 (428)
T ss_pred HHHHhhhCchhhccCCcccc-------cccceeeecc-cccCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhh
Confidence 554433 3333332222111 0111111111 0011 1111111111221111 111222
Q ss_pred CCCeEEEEecC--ChHHHHHHHHHHHHHHhchhc
Q 018172 322 DAKYARVSMLS--REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 322 ~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~~ 353 (360)
...++|||++. +++|++.+++.+.+.+...+.
T Consensus 388 ~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~ 421 (428)
T KOG1549|consen 388 AHSSIRISIGRYTTEEDIDYLVDAIKKLVSLLRE 421 (428)
T ss_pred hcceeEEeeeeeCcHHHHHHHHHHHHHHHHhccc
Confidence 35689999977 899999999999999987653
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-20 Score=174.90 Aligned_cols=276 Identities=13% Similarity=0.080 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc--CCCCCCCceEEEeCCCCCCcHHHHHHh---CCe---
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS--SPGGPEPISVVSAAPYYSQYPAETDYL---RSG--- 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~--~~gd~~~~~vl~~~p~~~~~~~~~~~~---g~~--- 110 (360)
.+|++++++++.. .++|++++|+++++..+++... ...++ |+..+++|......+... +..
T Consensus 91 ~~lae~l~~~~~~-------~~~v~~~~sGseA~e~Alk~ar~~~gr~~----ii~~~~~yhG~~~~~~~~~~~~~~~~~ 159 (423)
T TIGR00713 91 ILLAKEIISRVPS-------VEMVRFVNSGTEATMSAVRLARGYTGRDK----IIKFEGCYHGHHDALLVKAGSGAATLG 159 (423)
T ss_pred HHHHHHHHHhCCc-------ccEEEEeCCHHHHHHHHHHHHHHhhCCCE----EEEEcCCCCCChhhhhccccCcccccC
Confidence 7777777776642 2589999999999999888653 22344 999999999976433321 110
Q ss_pred --------------eeeecC-Ccccccc-----CCCeeEEEE-cCCCCCCcccch-----HHHHHHhhhcCcEEEEeecc
Q 018172 111 --------------LYKWDG-DANTFDK-----NNGAYIEVV-NSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAY 164 (360)
Q Consensus 111 --------------~~~~~~-~~~~~~~-----~~~~~~i~~-~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay 164 (360)
...++. |.+.++. ..++++|++ +.|+| +|.+.+ +.+.++|+++|+++|+||+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~ 238 (423)
T TIGR00713 160 LPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVM 238 (423)
T ss_pred CCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccc
Confidence 111111 2222221 146778877 58888 898876 35678999999999999999
Q ss_pred cCCCCCcC-----CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHH---HHhhccccCChHHHHHHHHHhccc
Q 018172 165 YWPQYTPI-----TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTR---FIELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 165 ~~~~~~~~-----~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
.+...... .+. ..+ +.+|||.++ +|+|+||+++ ++++++.+.. .....+++.++++|.++.++++.+
T Consensus 239 ~g~r~g~~~~~~~~~~-~pD--i~t~sK~l~-~G~pig~v~~-~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~ 313 (423)
T TIGR00713 239 TGFRVALGGAQEYFGV-EPD--LTTLGKIIG-GGLPVGAFGG-RREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLL 313 (423)
T ss_pred cccccCcchhHHHhCC-Ccc--hhhhhhhhc-CCCceeeeeE-HHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHH
Confidence 74322111 111 112 348999999 9999999999 7899988863 223456789999999999999876
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC-----------Cch---HHH
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES-----------KED---EDC 302 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---~~~ 302 (360)
.+. ...++.++...++++.+.+.+++++........|.+.. +++.. ++. ..+
T Consensus 314 ~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~------------v~~~~~~~~~~~~~~~~~~~~~~~~ 379 (423)
T TIGR00713 314 DEE--GVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFS------------LFFTEEEVTNYADAKKSDTELFAKF 379 (423)
T ss_pred hcc--cHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEE------------EEEecCCCCChhhhhcccHHHHHHH
Confidence 554 57888888888888888888888753322222333321 22221 111 345
Q ss_pred HHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 303 EKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 303 ~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
.+.|.++||.+.++ .| +.+|++...+++++++++++|.+++.+
T Consensus 380 ~~~l~~~Gv~v~~~-~~----~~~~l~~~~t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 380 FHEMLDKGVFLPPS-QF----EACFLSAAHTEEDIENTIEAAEEVFAE 422 (423)
T ss_pred HHHHHHCCeEEecC-Cc----cceeeECCCCHHHHHHHHHHHHHHHhh
Confidence 66677899998753 22 357898877999999999999998854
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-19 Score=165.43 Aligned_cols=281 Identities=16% Similarity=0.083 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
.++|++++++++. . +.++++|+|+++..++.++ +++||+ |+++.|+|.++...+...|++++.++++
T Consensus 32 ~~le~~la~~~g~-------~-~~v~~~sgt~al~~~l~al~~~~Gd~----Viv~~~~~~~~~~~~~~~G~~~~~~~~~ 99 (380)
T TIGR03588 32 PAFEEALAEYVGA-------K-YAVAFNSATSALHIACLALGVGPGDR----VWTTPITFVATANCALYCGAKVDFVDID 99 (380)
T ss_pred HHHHHHHHHHHCC-------C-eEEEEcCHHHHHHHHHHHcCCCCCCE----EEeCCcchHHHHHHHHHcCCEEEEEecC
Confidence 9999999999995 3 3556667899999999998 789998 9999999999999999999999998876
Q ss_pred cccccc---------C----CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-CcCC-CC-CCccE
Q 018172 118 ANTFDK---------N----NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-TPIT-GA-ADHDI 180 (360)
Q Consensus 118 ~~~~~~---------~----~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-~~~~-~~-~~~~i 180 (360)
.+.... + +++++|++ +|++|...+ +.+.++|+++|+++|+|++|+.+.. .... +. ...++
T Consensus 100 ~~~~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~ 176 (380)
T TIGR03588 100 PDTGNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADA 176 (380)
T ss_pred CCcCCcCHHHHHHHhhcccCCCceEEEE---eCCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccce
Confidence 432211 3 57888884 457898877 6778888889999999999986432 1111 11 13478
Q ss_pred EEeccc--cccCCCCceEEEEeecCHHHHHHHHHHHhhcccc---------------------CC-hHHHHHHHHHhccc
Q 018172 181 MLFTLS--KCTGHAGSRIGWALVKDTEVARKMTRFIELGSIG---------------------VS-KESQLRAAKILGIV 236 (360)
Q Consensus 181 ~~~S~s--K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~---------------------~~-~~~~~~~~~~l~~~ 236 (360)
.++|++ |.++. | ..|++++.++++.+.++..+..+... .+ .+....++-.+..+
T Consensus 177 ~~~S~~~~K~~~~-~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL 254 (380)
T TIGR03588 177 TVFSFHPVKIITT-A-EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQL 254 (380)
T ss_pred EEEecCCCCcccc-c-CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHH
Confidence 888887 87763 3 46888887888888887654322110 00 11111111122211
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC-CcccccccccCCCCCCcccccCC---chHHHHHHHHhhCee
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYP-LEYCNFTGKFTNSHPGFAWLESK---EDEDCEKLLRAERIM 312 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gI~ 312 (360)
+.+++..++-+++.+++.+.|.+++++....+. +....+. .+.+.+... +.+.+.+.|.++||.
T Consensus 255 -----~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~r~~l~~~L~~~gI~ 322 (380)
T TIGR03588 255 -----KKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWH-------LYPILLDQEFGCTRKEVFEALRAAGIG 322 (380)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEE-------EEEEEECCcCCCCHHHHHHHHHHCCCC
Confidence 335667777777888888899888765543221 1110000 001222221 238888889999999
Q ss_pred eeCCCCC-----------CC--C-------CCeEEEEecC--ChHHHHHHHHHHHHHH
Q 018172 313 ARGGRRF-----------GA--D-------AKYARVSMLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 313 ~~pg~~f-----------~~--~-------~~~~R~s~~~--~~e~~~~~~~~l~~~~ 348 (360)
+++.... .. . ...+++.+.. ++++++..+++|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 323 VQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred cccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 8753211 00 0 1457887754 8999999999998874
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.9e-19 Score=161.47 Aligned_cols=274 Identities=18% Similarity=0.158 Sum_probs=198.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC-
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG- 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~- 116 (360)
+.+|++.+|+|+|. ++.+++++| -.++..++.+|.+++|. |+..+-.|-+....+++.+++++.++-
T Consensus 86 h~~LE~~lA~f~g~-------e~al~f~SG-y~AN~~~i~~l~~~~dl----i~~D~lnHASiidG~rls~a~~~~f~Hn 153 (388)
T COG0156 86 HVELEEELADFLGA-------EAALLFSSG-FVANLGLLSALLKKGDL----IFSDELNHASIIDGIRLSRAEVRRFKHN 153 (388)
T ss_pred HHHHHHHHHHHhCC-------CcEEEEccc-chhHHHHHHHhcCCCcE----EEEechhhhhHHHHHHhCCCcEEEecCC
Confidence 38999999999994 545666665 77888999999999997 889999999999999999999998863
Q ss_pred Ccccccc---C---C--CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC----cCC---C--CCCc
Q 018172 117 DANTFDK---N---N--GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT----PIT---G--AADH 178 (360)
Q Consensus 117 ~~~~~~~---~---~--~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~----~~~---~--~~~~ 178 (360)
|.+.++. . . +.++|+....-...|.+.+ +.+.+++++|+.++++||+|+.+.+. .+. + ..+.
T Consensus 154 D~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~v 233 (388)
T COG0156 154 DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEV 233 (388)
T ss_pred CHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccc
Confidence 3343332 1 1 4678888888888999988 78889999999999999999953222 121 2 2445
Q ss_pred cEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhcccc--CChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHH
Q 018172 179 DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIG--VSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWN 256 (360)
Q Consensus 179 ~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (360)
+|.++||+|+||..| ||+.+ +..+++.+.+......++ .++....++.++++.+ ......+++++++..
T Consensus 234 di~~gTlsKAlGs~G---g~v~g-~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l-----~~~~~~r~~L~~~~~ 304 (388)
T COG0156 234 DIIVGTLGKALGSSG---GYIAG-SAALIDYLRNRARPFIFSTALPPAVAAAALAALRIL-----EEGPERRERLQELAA 304 (388)
T ss_pred eEEEEEchhhhcccC---ceeeC-cHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHH
Confidence 899999999999888 99988 899999998764433333 4444444455566644 344567777888888
Q ss_pred HHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEec
Q 018172 257 MLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGA--DAKYARVSML 331 (360)
Q Consensus 257 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~ 331 (360)
++.+.++..+. .+ .+ +.+..+.+-+.+. ......|.++||++.+..+.-. +...+|++++
T Consensus 305 ~~~~~~~~~~~-~~-~~-------------s~s~I~pv~~gd~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lt 369 (388)
T COG0156 305 FFRSLLKALGL-VL-LP-------------SESPIIPVILGDEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLT 369 (388)
T ss_pred HHHHHHHhcCC-cc-CC-------------CCCCeeeeEeCCHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEec
Confidence 88866666542 21 11 1122445555553 4455556666999987554432 3467999997
Q ss_pred C--ChHHHHHHHHHHHHH
Q 018172 332 S--REEIFNIFLERLSAI 347 (360)
Q Consensus 332 ~--~~e~~~~~~~~l~~~ 347 (360)
. ++++++++++++.++
T Consensus 370 a~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 370 AAHTEEDIDRLAEALSEV 387 (388)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 7 999999999999875
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-19 Score=164.43 Aligned_cols=278 Identities=16% Similarity=0.077 Sum_probs=188.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
..+++++++++++. + ++++++|+|+++..++..+ .++||+ |+++.++|..+...+...|++++.++.
T Consensus 20 ~~~~~~~la~~~~~-------~-~~~~~~sgt~al~~~l~~l~~~~gd~----vl~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (352)
T cd00616 20 VREFEKAFAEYLGV-------K-YAVAVSSGTAALHLALRALGIGPGDE----VIVPSFTFVATANAILLLGATPVFVDI 87 (352)
T ss_pred HHHHHHHHHHHhCC-------C-eEEEECCHHHHHHHHHHHcCCCCCCE----EEeCCcchHHHHHHHHHcCCeEEEEec
Confidence 39999999999984 3 5788889999999999998 588998 999999999999999999999998877
Q ss_pred Ccccccc---------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCC-CCCCccEEEecc
Q 018172 117 DANTFDK---------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPIT-GAADHDIMLFTL 185 (360)
Q Consensus 117 ~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~-~~~~~~i~~~S~ 185 (360)
+.+.+.. ++++++|+++ ||+|...+ +.+.++|+++|+++|+|++|+.+...... -....++.+.|+
T Consensus 88 ~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~ 164 (352)
T cd00616 88 DPDTYNIDPELIEAAITPRTKAIIPV---HLYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSF 164 (352)
T ss_pred CCCcCCcCHHHHHHhcCcCCeEEEEE---CCCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcC
Confidence 6422221 3578888875 47998877 67888898899999999999854332111 011135778887
Q ss_pred c--cccCCCCceEEEEeecCHHHHHHHHHHHhhcccc------------CChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 186 S--KCTGHAGSRIGWALVKDTEVARKMTRFIELGSIG------------VSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 186 s--K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
+ |.++ +-+.|++++.++++.+.+.......... ...+....++..+.. ...+++..++.
T Consensus 165 ~~~K~~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~-----l~~~~~~~~~~ 237 (352)
T cd00616 165 HPTKNLT--TGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQ-----LEKLDEIIARR 237 (352)
T ss_pred CCCCCCc--ccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHH-----HHhhHHHHHHH
Confidence 6 8774 3346888886678888876654322111 011112222222211 14567777888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-----chHHHHHHHHhhCeeeeCCCCCC------
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-----EDEDCEKLLRAERIMARGGRRFG------ 320 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gI~~~pg~~f~------ 320 (360)
+++.+++.+.|++++++.+..+.... ......+.+.++ +...+.+.|+++||.+......-
T Consensus 238 ~~~~~~~~~~L~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~ 309 (352)
T cd00616 238 REIAERYKELLADLPGIRLPDVPPGV--------KHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPY 309 (352)
T ss_pred HHHHHHHHHHhcCCCCccCCCCCCCC--------ceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhh
Confidence 88999999999998777765443210 001112333343 23788888999999765321110
Q ss_pred ---------CC-------CCeEEEEecC--ChHHHHHHHHHHH
Q 018172 321 ---------AD-------AKYARVSMLS--REEIFNIFLERLS 345 (360)
Q Consensus 321 ---------~~-------~~~~R~s~~~--~~e~~~~~~~~l~ 345 (360)
.. .+.+|+++.. ++||+++++++|+
T Consensus 310 ~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 310 KKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred hhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 00 2579999865 9999999998874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-19 Score=166.73 Aligned_cols=272 Identities=14% Similarity=0.088 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc--------------CCCCCCCceEEEeCCCCCCcHHHH
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS--------------SPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~--------------~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
.+|++++++|++. + ..++.+++..+...++.+|. +.++. |+...-+|.++...+
T Consensus 150 ~~LE~~LA~f~g~-------e-~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~----i~~D~~~HaSI~dG~ 217 (476)
T PLN02955 150 RLLESSLADLKKK-------E-DCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVA----IFSDALNHASIIDGV 217 (476)
T ss_pred HHHHHHHHHHHCC-------C-cEEEECChHHHHHHHHHHHhhccccccccccccCCCCcE----EEEeccchHHHHHHH
Confidence 8899999999994 4 45555556777777777762 33444 788888899999999
Q ss_pred HHh----CCeeeeecC-Ccccccc-----CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCc--
Q 018172 105 DYL----RSGLYKWDG-DANTFDK-----NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTP-- 171 (360)
Q Consensus 105 ~~~----g~~~~~~~~-~~~~~~~-----~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~-- 171 (360)
++. +++++.++- |.+.++. ..+.++|++....++.|.+.+ +++.++|+++|.++|+||+|+.+.+..
T Consensus 218 ~ls~~~~~a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G 297 (476)
T PLN02955 218 RLAERQGNVEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENG 297 (476)
T ss_pred HhccccCCceEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCC
Confidence 886 577777653 4444432 234466777777889999988 788888988999999999998532211
Q ss_pred --CC----CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhcccc--CChHHHHHHHHHhcccCCCchhH
Q 018172 172 --IT----GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIG--VSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 172 --~~----~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
.. -..+.+++++||||++|..| ||+++ +.++++.++.......++ .++....++.++++.+...
T Consensus 298 ~G~~e~~g~~~di~ii~~TLsKA~G~~G---Gfi~g-s~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~---- 369 (476)
T PLN02955 298 GGVAEEFNCEADVDLCVGTLSKAAGCHG---GFIAC-SKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKE---- 369 (476)
T ss_pred CcHHHHhCCCCCCcEEEEeCccchhccC---ceeec-HHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcC----
Confidence 11 13577899999999998777 99988 788999888655433333 2223333343455543221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFG 320 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~ 320 (360)
...+++++++.+++.+.+ ++.+.. ..+.+.+.+. ..+.+.|.++||.+.+..+..
T Consensus 370 -~~~r~~L~~n~~~fr~~~----G~~~~s-----------------PI~pI~ig~~~~a~~~~~~L~~~Gi~v~~i~yPt 427 (476)
T PLN02955 370 -KWRRKAIWERVKEFKALS----GVDISS-----------------PIISLVVGNQEKALKASRYLLKSGFHVMAIRPPT 427 (476)
T ss_pred -HHHHHHHHHHHHHHHHhc----CCCCCC-----------------CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 235667777777776632 222211 1333444443 556888889999998755443
Q ss_pred C--CCCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 321 A--DAKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 321 ~--~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
. ....+|++++. ++||+++++++|.++.....
T Consensus 428 VP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~~ 463 (476)
T PLN02955 428 VPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDFDN 463 (476)
T ss_pred CCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 3 23469999966 99999999999999876543
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=169.78 Aligned_cols=261 Identities=14% Similarity=0.101 Sum_probs=172.3
Q ss_pred CcEEEcCChHHHHHHHHHhhcC---------CCCCCCceEEEeCCCCCCcHHHHHHhCC-------------eeeeec-C
Q 018172 60 RHIVIGTGSTQLYQAALYALSS---------PGGPEPISVVSAAPYYSQYPAETDYLRS-------------GLYKWD-G 116 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~---------~gd~~~~~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~-~ 116 (360)
+.+++++++++++..++..+.. +|. .+|++..-+|......+...+. .+..++ .
T Consensus 99 ~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~---~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (401)
T PRK00854 99 HKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQ---AEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFG 175 (401)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCC---ceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCCC
Confidence 4799999999999999998852 121 1377777666655433322221 122222 2
Q ss_pred Ccccccc--CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCc--CC---CCCCccEEEec
Q 018172 117 DANTFDK--NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTP--IT---GAADHDIMLFT 184 (360)
Q Consensus 117 ~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~--~~---~~~~~~i~~~S 184 (360)
|.+.++. ++++++|++++|+||+|.+++ +.+.++|+++|+++|+||+|.+..... .. .....++.+
T Consensus 176 d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~-- 253 (401)
T PRK00854 176 DAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTL-- 253 (401)
T ss_pred CHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEE--
Confidence 3333332 457999999999999999986 356678999999999999998322211 10 111224444
Q ss_pred cccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 018172 185 LSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQ 264 (360)
Q Consensus 185 ~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (360)
++|.++-..+|+||+++ ++++++.+.......+++.+++.+.++.+.|+.+.+ +...+.++++.+++.+.|++
T Consensus 254 ~~K~l~gg~~~ig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~------~~~~~~~~~~~~~l~~~L~~ 326 (401)
T PRK00854 254 IGKALSGGFYPVSAVLS-NSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTE------EGMIENAAEMGAYFLEGLRS 326 (401)
T ss_pred ecccccCCccCeEEEEE-cHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHH------cCHHHHHHHHHHHHHHHHHh
Confidence 36999833379999999 888888886544445667899999999998875421 23567788888999999988
Q ss_pred cCCcccCCCCCcccccccccCCCCCCcccccC-Cc---hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec--CChHHHH
Q 018172 265 SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES-KE---DEDCEKLLRAERIMARGGRRFGADAKYARVSML--SREEIFN 338 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~--~~~e~~~ 338 (360)
++...+.... +.+.++.+.+ ++ ...+.+.|.++||.+.+. ..+++|+++. .++++++
T Consensus 327 ~~~~~~~~~~------------g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~~-----~~~~lR~~p~~~~t~e~i~ 389 (401)
T PRK00854 327 IRSNIVREVR------------GRGLMLAVELEPEAGGARQYCEALKERGLLAKDT-----HDHTIRLAPPLVITREQVD 389 (401)
T ss_pred hccCceEEEe------------ccceEEEEEEecCchhHHHHHHHHHHCCeEEecC-----CCCEEEEeCCcccCHHHHH
Confidence 7422111111 1122222222 21 256677777889998752 2469999963 4999999
Q ss_pred HHHHHHHHHHh
Q 018172 339 IFLERLSAIQG 349 (360)
Q Consensus 339 ~~~~~l~~~~~ 349 (360)
+++++|++++.
T Consensus 390 ~~i~~l~~~l~ 400 (401)
T PRK00854 390 WALEQIAKVLA 400 (401)
T ss_pred HHHHHHHHHhh
Confidence 99999998863
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-19 Score=169.94 Aligned_cols=265 Identities=11% Similarity=0.014 Sum_probs=180.5
Q ss_pred cEEEcCChHHHHHHHHHhhcC--CCCCCCceEEEeCCCCCCcHHHHHHhCCeeee----------------ecCCccc--
Q 018172 61 HIVIGTGSTQLYQAALYALSS--PGGPEPISVVSAAPYYSQYPAETDYLRSGLYK----------------WDGDANT-- 120 (360)
Q Consensus 61 ~i~~t~G~t~~l~~~~~~l~~--~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~----------------~~~~~~~-- 120 (360)
.+++++++++++..+++.... .... |+.-.++|......+...+..... ++.+.++
T Consensus 104 ~~~f~~sGsea~e~Alklar~~~~r~~----iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 179 (425)
T PRK08088 104 KTLLVTTGSEAVENAVKIARAATKRSG----VIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVS 179 (425)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhCCCe----EEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCcc
Confidence 677777777877777665531 1222 777799999888776665433111 2211111
Q ss_pred -------ccc-------CCCeeEEEEc-CCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCCCc-CC--CCCCc
Q 018172 121 -------FDK-------NNGAYIEVVN-SPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQYTP-IT--GAADH 178 (360)
Q Consensus 121 -------~~~-------~~~~~~i~~~-~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~~~-~~--~~~~~ 178 (360)
++. ..+..++++. ..+|+.....+ +.+.++|+++|+++|+||+|.+..... .. ...+.
T Consensus 180 ~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~ 259 (425)
T PRK08088 180 EDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGV 259 (425)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCC
Confidence 111 1234455543 33566555555 467788999999999999998532221 11 13344
Q ss_pred cEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 179 DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 179 ~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
+..+.||||.++ +|+|+||+++ +.++++.+.......+++.+++.|.++.++++..... .++++.++..+++++.+
T Consensus 260 ~pdi~s~sK~l~-~G~rig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~l 335 (425)
T PRK08088 260 AADLTTFAKSIA-GGFPLAGVTG-RAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQE--NLLQKANALGEKLKDGL 335 (425)
T ss_pred CCCEEEEecccc-CCCcceeeEe-cHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHH
Confidence 556899999999 9999999999 8999999877666678889999999999999865443 77788887777766666
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC--------Cch---HHHHHHHHhhCeeeeCCCCCCCCCCeEE
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES--------KED---EDCEKLLRAERIMARGGRRFGADAKYAR 327 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R 327 (360)
.+.+..++.+..+. +.+.++|+.+ ++. ..+...+.++||.+.|+..+ .+.+|
T Consensus 336 ~~l~~~~~~~~~v~--------------g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~---~~~iR 398 (425)
T PRK08088 336 LAIAEKHPEIGDVR--------------GLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPY---YNVLR 398 (425)
T ss_pred HHHHHhCCCeEEEe--------------ccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCC---CCEEE
Confidence 66656665322221 2244677776 222 55677778899998876544 36899
Q ss_pred EEecC--ChHHHHHHHHHHHHHHhc
Q 018172 328 VSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 328 ~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
|+++. +++++++++++|.+++..
T Consensus 399 l~~~~~~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 399 ILVPLTIEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred EECCCCcCHHHHHHHHHHHHHHHHh
Confidence 99974 899999999999999875
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-19 Score=180.29 Aligned_cols=291 Identities=12% Similarity=0.026 Sum_probs=206.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCC-cEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHH---HhCCeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGR-HIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETD---YLRSGLY 112 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~-~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~---~~g~~~~ 112 (360)
+.+.|+.+++|++. .+++ +|++|+|+|+++++++.++ +++||+ |+++.-.|.+.....+ ..|++++
T Consensus 80 ~e~aR~~ia~~lga-----~~~~~~VvFtsnaT~alnlva~~l~~~~gd~----Iv~t~~eH~svl~~~~~a~~~G~~v~ 150 (805)
T PLN02724 80 IESARQQVLEYFNA-----PPSDYACVFTSGATAALKLVGETFPWSSESH----FCYTLENHNSVLGIREYALEKGAAAI 150 (805)
T ss_pred HHHHHHHHHHHhCC-----CccceEEEEeCChHHHHHHHHHHCCCCCCCe----EEEeeccccchHHHHHHHHHcCCeEE
Confidence 48899999999996 1333 5899999999999999988 778888 9999888887765543 3488888
Q ss_pred eecCC--------cc--------cccc------------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhc--------C
Q 018172 113 KWDGD--------AN--------TFDK------------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSA--------E 155 (360)
Q Consensus 113 ~~~~~--------~~--------~~~~------------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~--------~ 155 (360)
.++++ .+ .+.. ++++++|.+++.+|-||.++| +++..+++.. +
T Consensus 151 ~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~ 230 (805)
T PLN02724 151 AVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGR 230 (805)
T ss_pred eccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcc
Confidence 87765 11 1111 145689999999999999999 5555555522 3
Q ss_pred cEEEEeecccCCCCCcCCCCCCccEEEeccccccC-CCCceEEEEeecCHHHHHHHHHHH--------------------
Q 018172 156 GKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTG-HAGSRIGWALVKDTEVARKMTRFI-------------------- 214 (360)
Q Consensus 156 ~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~-------------------- 214 (360)
+++++|.+++.++.+......+.++++.|++|.+| +.| +|+++. .+++.+.+....
T Consensus 231 ~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G--~G~L~v-r~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~ 307 (805)
T PLN02724 231 WMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTG--LGALLV-RRDAAKLLKKKYFGGGTVAASIADIDFVKRRE 307 (805)
T ss_pred eEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCC--ceEEEE-ehhhhhhhcCCccCCCceEEEecccceeeccc
Confidence 57999999998887766677889999999999998 556 888888 566666554321
Q ss_pred ----hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC------CcccCCCCCccccccccc
Q 018172 215 ----ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG------VFGLPEYPLEYCNFTGKF 284 (360)
Q Consensus 215 ----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~~~~~~~~~ 284 (360)
.+...+.|.+...++.++++.+.. -.++++.++..+..+++.+.|++++ ++.+..+.... .+
T Consensus 308 ~~~~rfE~GT~n~~~i~~l~aal~~l~~---ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~---~~-- 379 (805)
T PLN02724 308 RVEQRFEDGTISFLSIAALRHGFKLLNR---LTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFK---LE-- 379 (805)
T ss_pred cHHHHhcCCCcchhHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCC---CC--
Confidence 112234566666677777776543 3578889999999999999999885 34444332100 00
Q ss_pred CCCCCCcccccCCc-------hHHHHHHHHhhCeeeeCCCCCCC----------------------------------CC
Q 018172 285 TNSHPGFAWLESKE-------DEDCEKLLRAERIMARGGRRFGA----------------------------------DA 323 (360)
Q Consensus 285 ~~~~~~~~~~~~~~-------~~~~~~~l~~~gI~~~pg~~f~~----------------------------------~~ 323 (360)
....+..+.+.+.+ ..++..++.++||.++.|..+.. ..
T Consensus 380 ~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~ 459 (805)
T PLN02724 380 FHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPT 459 (805)
T ss_pred cccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCccc
Confidence 00111223333322 15577778888999998865421 13
Q ss_pred CeEEEEecC--ChHHHHHHHHHHHHHH
Q 018172 324 KYARVSMLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 324 ~~~R~s~~~--~~e~~~~~~~~l~~~~ 348 (360)
+.+|+|++. +.||+++++++|++..
T Consensus 460 G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 460 GAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred ceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 789999977 9999999999999965
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=161.96 Aligned_cols=236 Identities=10% Similarity=0.059 Sum_probs=163.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH----HHHHhCCeeeeec
Q 018172 40 ELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA----ETDYLRSGLYKWD 115 (360)
Q Consensus 40 ~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~----~~~~~g~~~~~~~ 115 (360)
.|++.++.+.+ .++.+++++ +++++..++..++++||+ |++++|.|+++.. .++..|+++..++
T Consensus 68 ~Le~~la~le~-------~~~~v~~sS-G~aAi~~~l~all~~GD~----Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd 135 (395)
T PRK05967 68 ALCKAIDALEG-------SAGTILVPS-GLAAVTVPFLGFLSPGDH----ALIVDSVYYPTRHFCDTMLKRLGVEVEYYD 135 (395)
T ss_pred HHHHHHHHHhC-------CCCEEEECc-HHHHHHHHHHHhcCCCCE----EEEccCCcHHHHHHHHHHHHhcCeEEEEeC
Confidence 56666666554 334555555 689999999999999999 9999999999875 4567899998886
Q ss_pred CCc-ccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccccC-
Q 018172 116 GDA-NTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTG- 190 (360)
Q Consensus 116 ~~~-~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~~- 190 (360)
.+. +.+.. +++||+|++++|+||++...+ +.+.++|+++|+++|+|++|..+- ..-+...+.++++.|.+|.++
T Consensus 136 ~~~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~-~~~pl~~GaDivv~S~tKy~~G 214 (395)
T PRK05967 136 PEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPL-YFRPLDFGVDISIHAATKYPSG 214 (395)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCce-ecChhHcCCCEEEEecccccCC
Confidence 543 33433 567999999999999998888 778888888999999999998532 122345688999999999864
Q ss_pred CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 018172 191 HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGL 270 (360)
Q Consensus 191 ~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 270 (360)
..+.-.|+++. ++++.+.+.......+.+.++.....+...++ . +.-..++..++...+.+.|.+++.+..
T Consensus 215 h~d~~~G~v~~-~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~-------T-l~lR~~~~~~na~~lA~~L~~hp~v~~ 285 (395)
T PRK05967 215 HSDILLGTVSA-NEKCWPQLLEAHGTLGLCAGPDDTYQILRGLR-------T-MGIRLEHHRKSALEIARWLEGRPDVAR 285 (395)
T ss_pred CCCeeEEEEEc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcc-------c-HHHHHHHHHHHHHHHHHHHHhCCCCcE
Confidence 34566787766 67777777655555556666666554433332 2 333344446666778899999987765
Q ss_pred CCCCCcc----cccccccCCCCCCcccccCC
Q 018172 271 PEYPLEY----CNFTGKFTNSHPGFAWLESK 297 (360)
Q Consensus 271 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 297 (360)
+.+++-. +........+.+..+.+.++
T Consensus 286 V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 316 (395)
T PRK05967 286 VLHPALPSFPGHEIWKRDFSGASGIFSFVLA 316 (395)
T ss_pred EECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence 4444311 11111111234456777775
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=164.41 Aligned_cols=294 Identities=12% Similarity=0.076 Sum_probs=190.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH----HHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET----DYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~~~~ 113 (360)
..+|++.++++.+. + ..++|+++++++++++.+++++||+ |+++...|......+ ...|++++.
T Consensus 66 ~~~le~~lA~l~g~-------~-~av~~sSGt~Al~~al~~ll~~Gd~----Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~ 133 (433)
T PRK08134 66 VAVLEERVAALEGG-------V-GAIATASGQAALHLAIATLMGAGSH----IVASSALYGGSHNLLHYTLRRFGIETTF 133 (433)
T ss_pred HHHHHHHHHHHhCC-------C-cEEEeCCHHHHHHHHHHHHhCCCCE----EEEeCCccHHHHHHHHHHHhhCCeEEEE
Confidence 48999999999985 3 4688999999999999999999998 999999998775554 447999999
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. +++|++|++.+|+||+|.+.+ +.+.++|+++|+++|+|.++..+... .+-..+.++++.|.+|.+
T Consensus 134 vd~~d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~-~pl~~GaD~vv~S~tK~l 212 (433)
T PRK08134 134 VKPGDIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLL-RPFEHGADLVYHSATKFL 212 (433)
T ss_pred ECCCCHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccC-CchhcCCCEEEecccccc
Confidence 8764 344443 578999999999999999999 78888899899999999999865432 233678899999999999
Q ss_pred CCCCceEEEEeecCHH--------------------------------HHHHHH-HHHhhccccCChHHHHHHHHHhccc
Q 018172 190 GHAGSRIGWALVKDTE--------------------------------VARKMT-RFIELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 190 ~~~G~r~G~~~~~~~~--------------------------------~~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
+.+|-.+|.++..... +....+ ......+...++... ..++..+
T Consensus 213 ~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A---~l~~~gL 289 (433)
T PRK08134 213 GGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNA---WQLLQGI 289 (433)
T ss_pred CCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHH---HHHhcCC
Confidence 8788777776552110 000011 011112223333333 3333332
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcc----cccccccC-CCCCCcccccCCch-HHHHHHHHhhC
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEY----CNFTGKFT-NSHPGFAWLESKED-EDCEKLLRAER 310 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~~g 310 (360)
+-+....++-.++...+.+.|.+++.+..+.+++.. +....... .+.+..+.+.++++ +.+.+.+++-.
T Consensus 290 -----~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~~~~~~~~f~~~l~ 364 (433)
T PRK08134 290 -----ETLPLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRKFIESLK 364 (433)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecCCHHHHHHHHHhCC
Confidence 334455555577777888889998876655444321 11111111 23456778888644 44444444434
Q ss_pred eee---eCCC----------------------CCCCCCCeEEEEecCChHHHHHHHHHHHHHHhchhcc
Q 018172 311 IMA---RGGR----------------------RFGADAKYARVSMLSREEIFNIFLERLSAIQGGSISN 354 (360)
Q Consensus 311 I~~---~pg~----------------------~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~~~ 354 (360)
+.. .-|. ..|..++.+|||++.+ +.+.+++.|.+.+++.+++
T Consensus 365 l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvGlE--~~~dli~dl~~Al~~~~~~ 431 (433)
T PRK08134 365 LFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGLE--DADDLIDDLKRALKAAEKA 431 (433)
T ss_pred cceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHHHhhhhc
Confidence 422 1111 1122356799999662 2445566666666654443
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-19 Score=166.39 Aligned_cols=268 Identities=15% Similarity=0.081 Sum_probs=181.6
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-------CCCCCCceEEEeCCCCCCcHHHHHHhCCee-------------eeec-CCc
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-------PGGPEPISVVSAAPYYSQYPAETDYLRSGL-------------YKWD-GDA 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-------~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~-------------~~~~-~~~ 118 (360)
+.+++++++++++..+++.... ++. .+|+..+.+|......+..++... ..++ .|.
T Consensus 97 ~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r---~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (406)
T PRK12381 97 DRVFFCNSGAEANEAALKLARKYAHDRYGSHK---SGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDL 173 (406)
T ss_pred CeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCC---CeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCH
Confidence 5899999999999999888631 122 248888888888765444333211 1121 122
Q ss_pred ccccc--CCCeeEEEEcCCCCCCcccc--h----HHHHHHhhhcCcEEEEeecccCCCCCc--CC-CCCCccEEEecccc
Q 018172 119 NTFDK--NNGAYIEVVNSPNNPDGTIR--E----AVLAKVNRSAEGKLIHDLAYYWPQYTP--IT-GAADHDIMLFTLSK 187 (360)
Q Consensus 119 ~~~~~--~~~~~~i~~~~p~NPtG~~~--~----~~~~~~~~~~~~~li~D~ay~~~~~~~--~~-~~~~~~i~~~S~sK 187 (360)
+.++. ++++.+|++ .|.|++|-++ + +.+.++|++||+++|+||+|.+..... .. ...+...-+.|++|
T Consensus 174 ~~l~~~l~~~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~sK 252 (406)
T PRK12381 174 NSASALIDDQTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAK 252 (406)
T ss_pred HHHHHhccCCeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEehh
Confidence 22221 245667776 6999998654 2 467789999999999999996422111 11 11111111469999
Q ss_pred ccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 188 CTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 188 ~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
.++ +|+|+||+++ ++++++.+.......+++.+++.+.++.+.++.+.+ ++.++.++++.+++.+.|+++..
T Consensus 253 ~l~-gG~~ig~~~~-~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~------~~~~~~~~~~~~~l~~~L~~l~~ 324 (406)
T PRK12381 253 ALG-GGFPIGAMLT-TEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINT------PEMLNGVKQRHDWFVERLNTINA 324 (406)
T ss_pred hhh-CCCceEEEEE-cHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh------ccHHHHHHHHHHHHHHHHHHHHh
Confidence 999 8999999999 899998887654456678899999999998875432 24677788888888888877621
Q ss_pred -cccCCCCCcccccccccCCCCCCcccccCCc----h-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec--CChHHHHH
Q 018172 268 -FGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----D-EDCEKLLRAERIMARGGRRFGADAKYARVSML--SREEIFNI 339 (360)
Q Consensus 268 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~--~~~e~~~~ 339 (360)
..+.. .+++.+.++++.+++ . ..+.+.|.++||.+.+. + ++.+||+++ .+++++++
T Consensus 325 ~~~~~~-----------~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~---g--~~~lRl~p~~~~t~~~i~~ 388 (406)
T PRK12381 325 RYGLFS-----------EIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIA---G--PNVVRFAPALNISEEEITT 388 (406)
T ss_pred hCCCEE-----------EEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeC---C--CCEEEEeCCccCCHHHHHH
Confidence 11100 112334466776643 2 56778888999999763 2 468999875 49999999
Q ss_pred HHHHHHHHHhchhccC
Q 018172 340 FLERLSAIQGGSISNG 355 (360)
Q Consensus 340 ~~~~l~~~~~~~~~~~ 355 (360)
++++|.+++.+..+++
T Consensus 389 ~~~~l~~~l~~~~~~~ 404 (406)
T PRK12381 389 GLDRFARACERFVSRG 404 (406)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998765443
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-20 Score=165.26 Aligned_cols=235 Identities=13% Similarity=0.041 Sum_probs=153.9
Q ss_pred HHHHHH-hcCCceeeecCCcccccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCC
Q 018172 4 EAFWRK-LGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSP 82 (360)
Q Consensus 4 ~~~~~~-~~~~~~~~~~~~~~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~ 82 (360)
.+||.+ ...-..++.++.+.+ ..+.|. ..++++.++++++. ++.+++|+|+|+++..++.+++++
T Consensus 33 ~~~~~~~~~~~d~~~~~~~d~l---~~~~g~----i~~~~~~~A~~~ga-------~~~~~~~~Gst~a~~~~l~al~~~ 98 (294)
T cd00615 33 YEFYGENLFKADVTELTGLDDL---LDPTGP----IKEAQELAARAFGA-------KHTFFLVNGTSSSNKAVILAVCGP 98 (294)
T ss_pred HHHhccchhhcccCCCCCCCCC---CCCChH----HHHHHHHHHHHhCC-------CCEEEEcCcHHHHHHHHHHHcCCC
Confidence 345533 233344455554443 233443 59999999999995 345666999999999999999999
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCcc-------cccc---------CCCeeEEEEcCCCCCCcccch-H
Q 018172 83 GGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDAN-------TFDK---------NNGAYIEVVNSPNNPDGTIRE-A 145 (360)
Q Consensus 83 gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~---------~~~~~~i~~~~p~NPtG~~~~-~ 145 (360)
||+ |+++.|+|.+....+...|++++.++.+.+ +++. .++++++++++| ||+|.+++ +
T Consensus 99 gd~----Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~ 173 (294)
T cd00615 99 GDK----ILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLR 173 (294)
T ss_pred CCE----EEEeCCchHHHHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHH
Confidence 998 999999999999999999999988765422 1111 257899999999 69999998 6
Q ss_pred HHHHHhhhcCcEEEEeecccC-----CCCCcCCCCCCccEEEeccccccCCCCceEEEEeecCHH--HHHHHHHHHh-hc
Q 018172 146 VLAKVNRSAEGKLIHDLAYYW-----PQYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTE--VARKMTRFIE-LG 217 (360)
Q Consensus 146 ~~~~~~~~~~~~li~D~ay~~-----~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~--~~~~l~~~~~-~~ 217 (360)
.+.++|+++|+++|+|++|+. +..+......+.++++.|++|++ +|++.|+++..+.+ ..+.+..... ..
T Consensus 174 ~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~hK~l--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 251 (294)
T cd00615 174 KIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTL--PALTQGSMIHVKGDLVNPDRVNEALNLHQ 251 (294)
T ss_pred HHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEchhccc--chHhHHHHHHhCCCcCCHHHHHHHHHHHC
Confidence 788888889999999999974 11222223457899999999975 57776554331222 1223322222 22
Q ss_pred cccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 018172 218 SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIR 263 (360)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 263 (360)
+.+++.+...++..++..+. .+.++..+++.++.+.+++.|+
T Consensus 252 ttsps~~~~asl~~a~~~~~----~~g~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 252 STSPSYLILASLDVARAMMA----LEGKELVEELIELALYARQEIN 293 (294)
T ss_pred CCCcHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444331 2233344445555555555543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.3e-19 Score=166.30 Aligned_cols=264 Identities=12% Similarity=0.031 Sum_probs=168.1
Q ss_pred CcEEEcCChHHHHHHHHHhhcCC-----C-CCCCceEEEeCCCCCCcHHH-HHHhCCe------------eeeecC-Ccc
Q 018172 60 RHIVIGTGSTQLYQAALYALSSP-----G-GPEPISVVSAAPYYSQYPAE-TDYLRSG------------LYKWDG-DAN 119 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~~-----g-d~~~~~vl~~~p~~~~~~~~-~~~~g~~------------~~~~~~-~~~ 119 (360)
+.+++++++++++..++..+... | .+.+.+|+..+-+|...... +...+.. +..++. |.+
T Consensus 89 ~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 168 (400)
T PTZ00125 89 DKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVE 168 (400)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHH
Confidence 47889999999999999877411 0 00012388777777665433 3322211 111211 223
Q ss_pred cccc---CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCC--cC-C--CCCCccEEEeccc
Q 018172 120 TFDK---NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYT--PI-T--GAADHDIMLFTLS 186 (360)
Q Consensus 120 ~~~~---~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~--~~-~--~~~~~~i~~~S~s 186 (360)
.++. .+++++|++..++||||.+++ +.+.++|+++|+++|+||+|.+.... .. . .....++ .++|
T Consensus 169 ~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~--~~~s 246 (400)
T PTZ00125 169 ALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDI--VLLG 246 (400)
T ss_pred HHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCE--EEEc
Confidence 3322 357899999989999999886 35678899999999999999742111 11 1 1111233 3578
Q ss_pred cccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc-
Q 018172 187 KCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS- 265 (360)
Q Consensus 187 K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 265 (360)
|.++..++|+||+++ ++++++.+.......+++.+++.|.++.++++.+.+. . ..++.+++.+++.+.|.+.
T Consensus 247 K~l~~g~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~--~----~~~~~~~~~~~l~~~l~~l~ 319 (400)
T PTZ00125 247 KALSGGLYPISAVLA-NDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEE--K----LAENAQRLGEVFRDGLKELL 319 (400)
T ss_pred ccccCCCcCcEEEEE-cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhc--C----HHHHHHHHHHHHHHHHHHHH
Confidence 999844459999999 8899888865544456778899999888878754322 2 2334444455555555443
Q ss_pred ---CCcccCCCCCcccccccccCCCCCCcccccCCc----h-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec--CChH
Q 018172 266 ---GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----D-EDCEKLLRAERIMARGGRRFGADAKYARVSML--SREE 335 (360)
Q Consensus 266 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~--~~~e 335 (360)
+.+.... +.+.+.++.++. . ..+.+.|.++||.+.|+. .+++||+.. .+++
T Consensus 320 ~~~~~~~~~~--------------~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~lRi~~~~~~~~~ 380 (400)
T PTZ00125 320 KKSPWVKEIR--------------GKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKPTH-----DNIIRFAPPLVITKE 380 (400)
T ss_pred hcCCCeEEEe--------------cccEEEEEEEccCcchHHHHHHHHHHHCCeEEeecC-----CCEEEEECCccCCHH
Confidence 2211111 223355555542 1 456667778899998852 568999953 5999
Q ss_pred HHHHHHHHHHHHHhch
Q 018172 336 IFNIFLERLSAIQGGS 351 (360)
Q Consensus 336 ~~~~~~~~l~~~~~~~ 351 (360)
++++++++|.+++.+.
T Consensus 381 ~i~~~l~~l~~~l~~~ 396 (400)
T PTZ00125 381 QLDQALEIIKKVLKSF 396 (400)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=159.53 Aligned_cols=279 Identities=11% Similarity=0.057 Sum_probs=198.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCC-hHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc--HHHHHHhCCeeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTG-STQLYQAALYALSSPGGPEPISVVSAAPYYSQY--PAETDYLRSGLYKW 114 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G-~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~--~~~~~~~g~~~~~~ 114 (360)
+.++|+.++++++. ...++|++++| +|.+++.++..++.+|++ +++...+.... ..+++..|. +..+
T Consensus 39 ~~~~~~~l~~l~~~-----~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~----~l~i~~G~fg~r~~~~a~~~g~-~~~~ 108 (349)
T TIGR01364 39 ANEAESDLRELLNI-----PDNYEVLFLQGGATGQFAAVPLNLLAEGKV----ADYIVTGAWSKKAAKEAKKYGV-VNVV 108 (349)
T ss_pred HHHHHHHHHHHhCC-----CCCceEEEEcCCchHHHHHHHHhcCCCCCe----EEEEECCHHHHHHHHHHHHhCC-cEEE
Confidence 37778888888873 12346888866 999999999999988887 66554443322 567888888 5554
Q ss_pred cCC----------ccccccCCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEec
Q 018172 115 DGD----------ANTFDKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFT 184 (360)
Q Consensus 115 ~~~----------~~~~~~~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S 184 (360)
..+ .+....++++++|.+++-.+.||+..+ ++++.+++++++|.+.+.++.+...+..+ ++++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~th~ETstGv~~~----~l~~~~~~l~iVDavss~g~~~id~~~~d--~~~~s 182 (349)
T TIGR01364 109 ASGKEGNYTKIPDPSTWEISEDAAYVHYCANETIHGVEFR----ELPDVKNAPLVADMSSNILSRPIDVSKFG--LIYAG 182 (349)
T ss_pred eccccCCCCCCCCHHhcCCCCCCCEEEEcCCCCcccEecc----eecccCCCeEEEEccccccCccCCHHHcc--EEEEe
Confidence 422 222334568899999999999999876 44555899999999998776665555444 99999
Q ss_pred cccccCCCCceEEEEeecCHHHHHHHHHH----------H--hhccccCChHHHHHHHHHhcccCCCchh-HHHHHHHHH
Q 018172 185 LSKCTGHAGSRIGWALVKDTEVARKMTRF----------I--ELGSIGVSKESQLRAAKILGIVSDDYPN-FFEYGRRLM 251 (360)
Q Consensus 185 ~sK~~~~~G~r~G~~~~~~~~~~~~l~~~----------~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~ 251 (360)
.+|.+|++| +|+++. ++++.+.+... . .....++|.....++.++|+.+.+ . .++++.++.
T Consensus 183 sqK~lgP~G--lg~l~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~---~gG~e~i~~r~ 256 (349)
T TIGR01364 183 AQKNIGPAG--LTVVIV-RKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKE---QGGVKAIEKRN 256 (349)
T ss_pred cccccCCCc--eEEEEE-CHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHH---cCCHHHHHHHH
Confidence 999999888 888888 77777655221 1 112346677778888888887653 4 599999999
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEE
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARV 328 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~ 328 (360)
++..+++++.|++++++......... ++ +..+.+.+++. ......+.++|+++.+|.. ..+.+|+
T Consensus 257 ~~l~~~l~~~l~~~~gl~~~~~~~~~--------rs-~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~---~~g~vRv 324 (349)
T TIGR01364 257 QAKAQLLYDTIDNSNGFYRNPVDPRN--------RS-RMNVVFTLGNEELEKRFLKEAEERGLVSLKGHR---SVGGMRA 324 (349)
T ss_pred HHHHHHHHHHHHhCCCeeccCCCHHH--------cC-CeEEEEecCChhHhHHHHHHHHHCCCcccCCcc---ccCeeEE
Confidence 99999999999999754332111000 01 01233444432 5555688889998777754 2468999
Q ss_pred EecC--ChHHHHHHHHHHHHHHhc
Q 018172 329 SMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 329 s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
|+.. ++||+++++++|++++.+
T Consensus 325 S~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 325 SIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred ECcCCCCHHHHHHHHHHHHHHHHh
Confidence 9866 899999999999998764
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=161.96 Aligned_cols=279 Identities=15% Similarity=0.090 Sum_probs=193.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCC-hHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTG-STQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G-~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
+.+.|+.++++++.. .+++|++|+| +|++++.++..+..+++. +..|+. .|.......+++..|.+++.++.
T Consensus 46 ~~~~r~~l~~l~~~~-----~~~~vvf~~gs~T~a~~~~~~~l~~~~~~-~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~ 118 (355)
T cd00611 46 VNEAESDLRELLNIP-----DNYKVLFLQGGATGQFAAVPLNLLGDKGT-ADYVVT-GAWSAKAAKEAKRYGGVVVIVAA 118 (355)
T ss_pred HHHHHHHHHHHhCCC-----CCceEEEEcCCchHHHHHHHHhcCCCCCe-EEEEEC-CHHHHHHHHHHHhcCCCcEEEec
Confidence 378999999999841 3457999988 999999999999874332 111333 22222223477888988887775
Q ss_pred Ccc----c------cccCCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccc
Q 018172 117 DAN----T------FDKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLS 186 (360)
Q Consensus 117 ~~~----~------~~~~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~s 186 (360)
+.+ . ...++++++|.+++-+|.||..+++ +++.+|+++++|.+.+.++.+......+ +.+.|.+
T Consensus 119 ~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~~----i~~~~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~ 192 (355)
T cd00611 119 KEEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFDE----VPDTGGVPLVADMSSNILSRPIDVSKFG--VIYAGAQ 192 (355)
T ss_pred ccccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcce----ecccCCCeEEEEccccccCCCCCHHHhC--EEEeecc
Confidence 421 1 1225789999999999999998553 3445999999999999877666555544 4567789
Q ss_pred cccCCCCceEEEEeecCHHHHHHHHHH-------H----h-hccccCChHHHHHHHHHhcccCCCchh-HHHHHHHHHHH
Q 018172 187 KCTGHAGSRIGWALVKDTEVARKMTRF-------I----E-LGSIGVSKESQLRAAKILGIVSDDYPN-FFEYGRRLMSE 253 (360)
Q Consensus 187 K~~~~~G~r~G~~~~~~~~~~~~l~~~-------~----~-~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~ 253 (360)
|.+|++| +|+++. .+++.+.+... . . ....++|.....++.++++.+.+ . -++++.++.++
T Consensus 193 K~lGP~G--~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~---~gg~e~i~~~~~~ 266 (355)
T cd00611 193 KNLGPAG--VTVVIV-RKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKE---QGGVEAMEKRNRQ 266 (355)
T ss_pred cccCCCc--eEEEEE-CHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHH
Confidence 9999887 888888 67777654321 0 0 11235666777888888887653 3 58999999999
Q ss_pred HHHHHHHHHHhcCCcc-cCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEE
Q 018172 254 RWNMLRQVIRQSGVFG-LPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVS 329 (360)
Q Consensus 254 ~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s 329 (360)
+.+++++.|.+++++. ....... ++ +..+.+.+++. ......+.++|+.+.+|.. ..+.+|+|
T Consensus 267 l~~~l~~~l~~~~gl~~~~~~~~~---------rs-~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~---~~g~vR~S 333 (355)
T cd00611 267 KAQLLYDTIDNSNGFYRGPVDKRA---------RS-RMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHR---SVGGIRAS 333 (355)
T ss_pred HHHHHHHHHHhCccccccCCCHHH---------cC-ceEEEEEcCChhhhHHHHHHHHHCCCcccCCCc---ccCeEEEE
Confidence 9999999999996542 1111000 01 11234444441 4444677788998666653 24689999
Q ss_pred ecC--ChHHHHHHHHHHHHHH
Q 018172 330 MLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 330 ~~~--~~e~~~~~~~~l~~~~ 348 (360)
+.. ++||+++++++|+++.
T Consensus 334 ~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 334 IYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred ccCCCCHHHHHHHHHHHHHHh
Confidence 977 9999999999999864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-17 Score=156.16 Aligned_cols=249 Identities=16% Similarity=0.146 Sum_probs=172.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH----HHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP----AETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~----~~~~~~g~~~~~ 113 (360)
..+|++.++++.+. + ..+++++++.++++++.+++++||+ |+++.+.|.... ..+...|++++.
T Consensus 66 ~~~lE~~la~leg~-------~-~av~~sSG~aAi~~al~all~~GD~----Vl~~~~~yg~t~~~~~~~~~~~Gi~v~f 133 (384)
T PRK06434 66 VQAFEEKYAVLENA-------E-HALSFSSGMGAITSAILSLIKKGKR----ILSISDLYGQTFYFFNKVLKTLGIHVDY 133 (384)
T ss_pred HHHHHHHHHHHhCC-------C-cEEEeCCHHHHHHHHHHHHhCCCCE----EEEecCccchHHHHHHHHHHhcCcEEEE
Confidence 48999999999984 3 4677777789999999999999998 999988777665 445667999999
Q ss_pred ecCCc-cccccCC-CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccccC
Q 018172 114 WDGDA-NTFDKNN-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTG 190 (360)
Q Consensus 114 ~~~~~-~~~~~~~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~~ 190 (360)
++++. +.+..++ ++++|++.+|+|||+.+.+ +.+.++|++++ +++|.++..+ +...+-..+.+++++|.+|.++
T Consensus 134 vd~~~~~~~~l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~-~~~~pl~~gaDivv~S~tK~i~ 210 (384)
T PRK06434 134 IDTDRLNSLDFDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASP-YNQNPLDLGADVVIHSATKYIS 210 (384)
T ss_pred ECCCChhheeecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCc-ccCCchhcCCCEEEeecccccC
Confidence 98875 4666655 7999999999999999888 77888888887 4569998643 2222224678999999999987
Q ss_pred CCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 018172 191 HAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFG 269 (360)
Q Consensus 191 ~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 269 (360)
-+| .-.|.+++.++++.+.++..+...+...++.....+ +..+ +.++...++-+++.+.+.+.|..++.+.
T Consensus 211 G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~---~~gL-----~tL~~R~~r~~~~a~~~a~~L~~~p~v~ 282 (384)
T PRK06434 211 GHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLA---LRGL-----KTLGLRMEKHNKNGMELARFLRDSKKIS 282 (384)
T ss_pred CCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHH---HhCC-----CcHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 434 445777776677777777655434444444433332 3322 4455666666788888899999998776
Q ss_pred cCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCe
Q 018172 270 LPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERI 311 (360)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI 311 (360)
.+.++|.. .......+.+..+.+.+++.+.+.+.+.+-.+
T Consensus 283 ~V~yPgl~--~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~l 322 (384)
T PRK06434 283 NVYYPDTE--IGKKVLRGFGGMLSFELRSMEDVHKFIRNLEI 322 (384)
T ss_pred EEECCChH--HHHHhcCCCCceEEEEECCHHHHHHHHHhCCc
Confidence 55555432 11111224455677777654444444444343
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=159.04 Aligned_cols=289 Identities=17% Similarity=0.140 Sum_probs=183.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~ 113 (360)
..+|++.++++.+. + ..++++++++++..++.+++++||+ |+++.+.|...... +...|++++.
T Consensus 65 ~~~le~~lA~l~g~-------~-~al~~~SG~~Ai~~al~all~pGd~----VIv~~~~y~~t~~~~~~~~~~~G~~v~~ 132 (427)
T PRK05994 65 NAVLEERVAALEGG-------T-AALAVASGHAAQFLVFHTLLQPGDE----FIAARKLYGGSINQFGHAFKSFGWQVRW 132 (427)
T ss_pred HHHHHHHHHHHhCC-------C-cEEEEcCHHHHHHHHHHHHhCCCCE----EEEecCcchhHHHHHHHHHHhcCcEEEE
Confidence 38899999999984 3 4677777899999999999999998 99999999975443 5667999998
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+.. ..+-..+.++++.|++|.+
T Consensus 133 vd~~d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~-~~pl~~gaDivv~S~tK~l 211 (427)
T PRK05994 133 ADADDPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYL-IRPIEHGADIVVHSLTKFL 211 (427)
T ss_pred ECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcccccc-CCccccCCcEEEEcCcccc
Confidence 8754 334433 468999999999999999998 6788888889999999999985432 1223467889999999999
Q ss_pred CCCCceEEEEeecCH------------------H-----HHHHHH----------HHHhhccccCChHHHHHHHHHhccc
Q 018172 190 GHAGSRIGWALVKDT------------------E-----VARKMT----------RFIELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 190 ~~~G~r~G~~~~~~~------------------~-----~~~~l~----------~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
+-+|-.+|.+++... + +.+.+. ......+...++.....+ +..+
T Consensus 212 gg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~---~~~l 288 (427)
T PRK05994 212 GGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLI---LTGI 288 (427)
T ss_pred CCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHH---HcCc
Confidence 866766676555211 1 111110 011112233433333333 3322
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcc----ccccccc-CCCCCCcccccCCch-HHHHHHHHhhC
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEY----CNFTGKF-TNSHPGFAWLESKED-EDCEKLLRAER 310 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~~~g 310 (360)
+.+....++-+++...+.+.|++++.+..+.+++.. +...... ..+.+..+.+.++++ +.+.+.+..-.
T Consensus 289 -----~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~~~~~~l~ 363 (427)
T PRK05994 289 -----ETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKGGYEAGVKLVSSLK 363 (427)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEecCCHHHHHHHHHhCC
Confidence 345555566677777888999999877655554421 1111111 123455677777643 44444443333
Q ss_pred eee---eCCCC----------------------CCCCCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 311 IMA---RGGRR----------------------FGADAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 311 I~~---~pg~~----------------------f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
+.. .-|.. .|..++.+|||++.+ +.+.+++.|.+.+.
T Consensus 364 l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE--~~~dli~dl~~Al~ 425 (427)
T PRK05994 364 LFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSIGIE--DVDDIIADLEQALA 425 (427)
T ss_pred cceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCcEEEEeccC--CHHHHHHHHHHHHh
Confidence 322 11211 122246799999762 23445555555554
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.4e-18 Score=162.13 Aligned_cols=306 Identities=14% Similarity=0.105 Sum_probs=191.1
Q ss_pred cccccc---cCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHH--H-hhcCCCCCCCceEEEeC
Q 018172 22 DLMSYL---SDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAAL--Y-ALSSPGGPEPISVVSAA 94 (360)
Q Consensus 22 ~~~~~y---~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~--~-~l~~~gd~~~~~vl~~~ 94 (360)
...+.| +...|. .++++.+++++. ..|. +...+..++|+++.+..+. . .+.++||..+.+|++++
T Consensus 97 ~~~tpYq~e~~sqG~-----lel~~~~~~~la~l~G~---~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~ 168 (481)
T PRK04366 97 AELHPLQPEETVQGA-----LELMYELQEWLKEITGM---DAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPD 168 (481)
T ss_pred hcCCCCCChhhhhHH-----HHHHHHHHHHHHHHhCC---CceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcC
Confidence 344556 345566 777777776543 2233 2335556666666655332 2 34567762233499999
Q ss_pred CCCCCcHHHHHHhCCeeeeecCCccc------cc--cCCCeeEEEEcCCCCCCccc-ch-HHHHHHhhhcCcEEEEeecc
Q 018172 95 PYYSQYPAETDYLRSGLYKWDGDANT------FD--KNNGAYIEVVNSPNNPDGTI-RE-AVLAKVNRSAEGKLIHDLAY 164 (360)
Q Consensus 95 p~~~~~~~~~~~~g~~~~~~~~~~~~------~~--~~~~~~~i~~~~p~NPtG~~-~~-~~~~~~~~~~~~~li~D~ay 164 (360)
|+|+.+...++..|++++.++.+.++ +. .++++++|++++|| |||.. .+ +.+.++|+++|+++++|.++
T Consensus 169 ~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~ 247 (481)
T PRK04366 169 SAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGAN 247 (481)
T ss_pred CccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecC
Confidence 99999999999999999998875432 22 14688999999998 99976 23 56677888899999999998
Q ss_pred cCCCCC-cCCCCCCccEEEeccccccCCC----CceEEEEeecCHHHHHHHHHH------H-------------hhcccc
Q 018172 165 YWPQYT-PITGAADHDIMLFTLSKCTGHA----GSRIGWALVKDTEVARKMTRF------I-------------ELGSIG 220 (360)
Q Consensus 165 ~~~~~~-~~~~~~~~~i~~~S~sK~~~~~----G~r~G~~~~~~~~~~~~l~~~------~-------------~~~~~~ 220 (360)
...... ..++..+.+++++|.+|.|+.| |-.+|++.+ .+++.+.+... . .....+
T Consensus 248 ~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~-~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t 326 (481)
T PRK04366 248 LNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGV-KEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFY 326 (481)
T ss_pred hhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeee-hhhhHhhCCCCeeeccCCceeecccccccCCCccccc
Confidence 632111 1245678899999999988644 234778877 56666655200 0 000111
Q ss_pred CChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCccc--ccCC-
Q 018172 221 VSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAW--LESK- 297 (360)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~- 297 (360)
.+.....++...+..+ + .+-+.+..++..++.+++.+.|+++ +.+......+..+. |-+ +..+
T Consensus 327 ~~~l~~~~a~~~l~~~-G--~~Gl~~~a~~~~~~a~~l~~~L~~~--~~~~~~~~~~~~~~---------~~~~~~~~~g 392 (481)
T PRK04366 327 GNFGVLVRAYAYIRSL-G--AEGLREVSEDAVLNANYLKARLKDI--YDLPYDRPCMHEFV---------LSGKKLKETG 392 (481)
T ss_pred CchHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHhHhh--CcccCCCCeeEEEE---------EECccccccC
Confidence 2223333444444322 1 1556666777788888999999886 22221111100000 101 1222
Q ss_pred -chHHHHHHHHhhCeeeeCCCCCC-CCCCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 298 -EDEDCEKLLRAERIMARGGRRFG-ADAKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 298 -~~~~~~~~l~~~gI~~~pg~~f~-~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
+..++.+.|.++||.+.. ..+. ...+.+|+|++- +++++++++++|.++.++..
T Consensus 393 ~~~~~v~~~L~~~Gi~~~~-~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~ 450 (481)
T PRK04366 393 VRTLDIAKRLLDYGFHPPT-IYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAK 450 (481)
T ss_pred CCHHHHHHHHHHCCccCCc-cccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 237889999999998652 2221 235689999854 89999999999999987643
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=148.28 Aligned_cols=320 Identities=14% Similarity=0.113 Sum_probs=222.7
Q ss_pred HHHHHHhcCCceeeecCCccccc-ccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEE--EcCChHHHHHHHHHhh-
Q 018172 4 EAFWRKLGDKCTMVISGSDLMSY-LSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIV--IGTGSTQLYQAALYAL- 79 (360)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~--~t~G~t~~l~~~~~~l- 79 (360)
.+|.....++.+..++....+++ |-+..|. +.++++.++.+=..+.+..++++++ -+-|+|.+++.....|
T Consensus 46 ~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl-----~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~ 120 (410)
T KOG1412|consen 46 KPWVLPVVKKAEKKIANDQSLNHEYLPILGL-----PTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLA 120 (410)
T ss_pred CeeEehhhhhhhhhccCchhccchhccccCc-----hhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHH
Confidence 35677777777888888777766 8899998 9999999997433344444455543 3456688888776655
Q ss_pred --cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeee----eec-----CCcccccc----C-CCeeEEEEcCCCCCCcccc
Q 018172 80 --SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLY----KWD-----GDANTFDK----N-NGAYIEVVNSPNNPDGTIR 143 (360)
Q Consensus 80 --~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~----~~~-----~~~~~~~~----~-~~~~~i~~~~p~NPtG~~~ 143 (360)
++ ..+ |.+++|+|.+...+++..|...+ .|. +|.+++.. . +....++..+.|||||.-.
T Consensus 121 ~~~~-~~~----VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDP 195 (410)
T KOG1412|consen 121 TFYN-KNT----VYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDP 195 (410)
T ss_pred Hhcc-cce----eEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCC
Confidence 33 334 99999999999999999995333 333 33444433 2 3334445567899999988
Q ss_pred hH----HHHHHhhhcCcEEEEeecccCCC-CCcCC---------CCCCccEEEeccccccCCCCceEEEEe--ecCHH--
Q 018172 144 EA----VLAKVNRSAEGKLIHDLAYYWPQ-YTPIT---------GAADHDIMLFTLSKCTGHAGSRIGWAL--VKDTE-- 205 (360)
Q Consensus 144 ~~----~~~~~~~~~~~~li~D~ay~~~~-~~~~~---------~~~~~~i~~~S~sK~~~~~G~r~G~~~--~~~~~-- 205 (360)
++ .+.+.-++++.+.+.|.+|.+.. -.+.. ....-.++..||+|.||+.+.|+|-+. ..++.
T Consensus 196 T~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i 275 (410)
T KOG1412|consen 196 TREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVI 275 (410)
T ss_pred CHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEEEecChhHH
Confidence 73 34444445899999999998532 11211 233447889999999999999999643 33444
Q ss_pred --HHHHHHHHHhhccccCChHHHHHHHHHhcccC--CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccc
Q 018172 206 --VARKMTRFIELGSIGVSKESQLRAAKILGIVS--DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFT 281 (360)
Q Consensus 206 --~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 281 (360)
+..+|.......-++++..+...+...|+... +++..-+..+..++++.|..|++.|..++ -+|.+
T Consensus 276 ~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~------TPGtW---- 345 (410)
T KOG1412|consen 276 AGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALK------TPGTW---- 345 (410)
T ss_pred HHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCcH----
Confidence 44455556666666788888888888888432 22345566677888888888888888884 22333
Q ss_pred cccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHHhchhc
Q 018172 282 GKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~~~ 353 (360)
|.+.+..|+|-+..+.. ..+..+.++++|++.+ +| |++++. ....+|...++|.+.++..+.
T Consensus 346 DHI~~QiGMFSyTGLtp-~qV~~li~~h~vyLl~-------~G--RInisGLN~~NveyVAkAIde~Vr~~~~ 408 (410)
T KOG1412|consen 346 DHITQQIGMFSYTGLTP-AQVDHLIENHKVYLLS-------DG--RINISGLNMKNVEYVAKAIDETVRAIKS 408 (410)
T ss_pred HHHHhhccceeecCCCH-HHHHHHHHhceEEEec-------CC--cEeeeccccccHHHHHHHHHHHHHhhcc
Confidence 55556666665555543 7788888889999876 33 888877 888999999999999876543
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=155.24 Aligned_cols=252 Identities=14% Similarity=0.059 Sum_probs=177.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH----HHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET----DYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~~~~ 113 (360)
...|++.++++.+. + ..++++++++++..++..++++||+ |+++...|.+....+ +..|.++..
T Consensus 64 ~~~le~~la~LEg~-------~-~a~~~~SGmaAi~~~~~~ll~~GD~----Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~ 131 (395)
T PRK08114 64 HFSLQEAMCELEGG-------A-GCALYPCGAAAVANAILAFVEQGDH----VLMTGTAYEPTQDFCSKILSKLGVTTTW 131 (395)
T ss_pred HHHHHHHHHHHhCC-------C-eEEEEhHHHHHHHHHHHHHcCCCCE----EEEeCCCcHHHHHHHHHHHHhcCcEEEE
Confidence 37889999998773 3 5777777899999999999999998 999999998887665 557999988
Q ss_pred ecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhc--CcEEEEeecccCCCCCcCCCCCCccEEEecccc
Q 018172 114 WDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSA--EGKLIHDLAYYWPQYTPITGAADHDIMLFTLSK 187 (360)
Q Consensus 114 ~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~--~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK 187 (360)
++. |.+.+.. +++|++|++.+|+||||.+.+ +.+.++|+++ |+++++|.++..+.. .-+...+.+++++|.+|
T Consensus 132 vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~pl~~GaDivv~S~tK 210 (395)
T PRK08114 132 FDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKALDFGIDISIQAGTK 210 (395)
T ss_pred ECCCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cCHHHcCCcEEEEcCcc
Confidence 864 3344443 568999999999999999999 7788888876 599999999986543 44456789999999999
Q ss_pred ccCCC-CceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 188 CTGHA-GSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 188 ~~~~~-G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
.++-+ ..-.|.++. +++..+.+.......+...++.....+...++ -+.-..++..++...+.+.|++++
T Consensus 211 yl~Ghsdv~~G~v~~-~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~--------TL~lR~~~~~~na~~va~~L~~hp 281 (395)
T PRK08114 211 YLVGHSDAMIGTAVA-NARCWEQLRENSYLMGQMVDADTAYMTSRGLR--------TLGVRLRQHEESSLKVAEWLAEHP 281 (395)
T ss_pred cccCCCcceeEEEEc-CHHHHHHHHHHHHhccCCCCHHHHHHHHcCCC--------cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 66534 366776665 67777777665555566666666665544443 244445556777788999999998
Q ss_pred CcccCCCCCcc----cccccccCCCCCCcccccCCc---hHHHHHHHHhhCe
Q 018172 267 VFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERI 311 (360)
Q Consensus 267 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI 311 (360)
.+..+.+++-. +........+.+..+.+.+++ .+.+.+.+.+-.+
T Consensus 282 ~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~l 333 (395)
T PRK08114 282 EVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSL 333 (395)
T ss_pred CEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCCc
Confidence 76655444311 111111122445567777764 2444444443333
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-17 Score=156.90 Aligned_cols=290 Identities=13% Similarity=0.071 Sum_probs=184.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~ 113 (360)
...|++.++++.+. + ..+++++++.++..++..++++||+ |+++...|...... +...|++++.
T Consensus 71 ~~~Le~~lA~l~g~-------~-~av~~sSG~aAi~~al~all~~Gd~----Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~ 138 (436)
T PRK07812 71 QDVVEQRIAALEGG-------V-AALLLASGQAAETFAILNLAGAGDH----IVSSPRLYGGTYNLFHYTLPKLGIEVSF 138 (436)
T ss_pred HHHHHHHHHHHhCC-------C-eEEEEccHHHHHHHHHHHHhCCCCE----EEEeCCcchHHHHHHHHHhhcCeEEEEE
Confidence 47999999999984 3 3566667788999999999999998 99999888877654 3446888888
Q ss_pred ec--CCcccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccc
Q 018172 114 WD--GDANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~--~~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~ 188 (360)
++ .|.+.+.. ++++++|++.+|+||+|.+.+ +.+.++|+++|+++|+|+++..+... .+-..+.++++.|++|.
T Consensus 139 vdd~~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~-~pl~~GaDivv~S~tK~ 217 (436)
T PRK07812 139 VEDPDDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLI-RPLEHGADIVVHSATKY 217 (436)
T ss_pred ECCCCCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccC-CchhcCCCEEEEecccc
Confidence 75 22233332 578999999999999999999 78888999899999999998754322 22346788999999999
Q ss_pred cCCCCceEEEEeecCHH------------------------------HHHHHH-HHHhhccccCChHHHHHHHHHhcccC
Q 018172 189 TGHAGSRIGWALVKDTE------------------------------VARKMT-RFIELGSIGVSKESQLRAAKILGIVS 237 (360)
Q Consensus 189 ~~~~G~r~G~~~~~~~~------------------------------~~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (360)
++..|--+|+++..... ++..++ ......+...++.....+ +..+
T Consensus 218 lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~---~rgl- 293 (436)
T PRK07812 218 LGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLI---AQGL- 293 (436)
T ss_pred cCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHH---hcCc-
Confidence 98777767777763211 010111 112223444555444433 3322
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcc----cccccccC-CCCCCcccccCCch-HHHHHHHHhhCe
Q 018172 238 DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEY----CNFTGKFT-NSHPGFAWLESKED-EDCEKLLRAERI 311 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~~gI 311 (360)
+-+....++-.++...+.+.|++++.+..+.++|.. +....... .+.+..+.+.++++ +.+.+.+.+-.+
T Consensus 294 ----~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l 369 (436)
T PRK07812 294 ----ETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNALTL 369 (436)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCc
Confidence 334444555577778899999999876654444321 11111111 23456778887544 334444433333
Q ss_pred eee---CCCC----------------------CCCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 312 MAR---GGRR----------------------FGADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 312 ~~~---pg~~----------------------f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
... -|.. .|..++.+|||++.+ +.+.+++.|.+.++.
T Consensus 370 ~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlSvGlE--d~~dli~dl~~Al~~ 431 (436)
T PRK07812 370 HSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGIE--GIDDILADLEAGFAA 431 (436)
T ss_pred ceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHHHh
Confidence 221 1211 122356799999662 234455555555543
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-17 Score=155.46 Aligned_cols=288 Identities=13% Similarity=-0.018 Sum_probs=190.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcC-ChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH--HHHHhCC-eeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGT-GSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA--ETDYLRS-GLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~-G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~--~~~~~g~-~~~~ 113 (360)
..+.|+.++++++. .++++|++++ |+|.+++.++..|+++++. .++..-.|+.-.. +.+.+|. +++.
T Consensus 50 ~~~~r~~l~~l~~~-----~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~----~vi~~g~f~~~~~~~~~~~~g~~~v~~ 120 (378)
T PRK03080 50 LKRVIEGTRELLSL-----PEGYEVGIVPGSDTGAWEMALWSLLGARRV----DHLAWESFGSKWATDVVKQLKLEDPRV 120 (378)
T ss_pred HHHHHHHHHHHhCC-----CCCceEEEECCchHHHHHHHHHhcCCCCcc----eEEEeCHHHHHHHHHHHhhcCCCCceE
Confidence 48888889999885 1234788875 8999999999999874332 3333445554322 2356788 8887
Q ss_pred ecCCcccc-cc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGDANTF-DK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~~~~~-~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+.... +. -..++.|.+++.+|.||...+ +++.+ +++|+++++|.+++.++.+..... .++++.|.+|.+
T Consensus 121 ~~~~~g~~~d~~~i~~~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~--iD~~~~s~~K~l 196 (378)
T PRK03080 121 LEADYGSLPDLSAVDFDRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWSK--LDVYTFSWQKVL 196 (378)
T ss_pred eccCCCCCCCHhhcCCCCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHHH--CcEEEEehhhhC
Confidence 76553211 11 112567999999999999998 45544 458999999999987665554443 589999999988
Q ss_pred C-CCCceEEEEeecCHHHHHHHHHHH----------------------hhcc-ccCChHHHHHHHHHhcccCCCchhHHH
Q 018172 190 G-HAGSRIGWALVKDTEVARKMTRFI----------------------ELGS-IGVSKESQLRAAKILGIVSDDYPNFFE 245 (360)
Q Consensus 190 ~-~~G~r~G~~~~~~~~~~~~l~~~~----------------------~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (360)
+ ++| +|+++. +++..+.+.... ...+ .+++.....++.++++.+.+. .-++
T Consensus 197 ~~P~G--~g~l~v-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~--gG~e 271 (378)
T PRK03080 197 GGEGG--HGMAIL-SPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSI--GGLD 271 (378)
T ss_pred CCCCc--eEEEEE-CHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHc--CCHH
Confidence 5 366 888888 677777665321 0011 122333444445667655431 1578
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---h--HHHHHHHHhhCeeeeCCCCCC
Q 018172 246 YGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---D--EDCEKLLRAERIMARGGRRFG 320 (360)
Q Consensus 246 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~l~~~gI~~~pg~~f~ 320 (360)
+++++.+++.+++++.|++++++.+..+.... .+ +..+.+.+++ . ......|.++||.++.|.. +
T Consensus 272 ~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~--------~s-~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~-~ 341 (378)
T PRK03080 272 ALIARTAANASVLYDWAEKTPWATPLVADPAT--------RS-NTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPY-R 341 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccCCccc--------cC-ccEEEEEcCCchHHHHHHHHHHHHHcCCeeccccc-c
Confidence 88999999999999999998765543221110 01 1134445555 2 3344455566888887642 2
Q ss_pred CCCCeEEEEecC--ChHHHHHHHHHHHHHHhchhc
Q 018172 321 ADAKYARVSMLS--REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 321 ~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~~ 353 (360)
...+.+|+|+.. +++++++++++|++++++.+.
T Consensus 342 ~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 342 DAPNGLRIWCGPTVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred CCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 235789999865 899999999999998876543
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-17 Score=147.59 Aligned_cols=282 Identities=17% Similarity=0.151 Sum_probs=195.5
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
..++++++++|+|. . ..+.++++|.++++++.+| .++||. ||+|.-+|....+.+...|++++.+++
T Consensus 36 v~~FE~~~ae~~G~-------k-~ava~~sgT~AL~laL~al~ig~GDe----VI~ps~TfvATan~i~~~Ga~PVFvDi 103 (374)
T COG0399 36 VRRFEQAFAEYLGV-------K-YAVAVSSGTAALHLALLALAIGPGDE----VIVPSFTFVATANAVLLVGAKPVFVDI 103 (374)
T ss_pred HHHHHHHHHHHhCC-------C-eEEEecChHHHHHHHHHhcCCCCCCE----EEecCCchHHHHHHHHHcCCeEEEEec
Confidence 48999999999995 3 6778888899999999966 689998 999999999999999999999999999
Q ss_pred Ccccccc---------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-CCcCCCCCCccEEEecc
Q 018172 117 DANTFDK---------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ-YTPITGAADHDIMLFTL 185 (360)
Q Consensus 117 ~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~-~~~~~~~~~~~i~~~S~ 185 (360)
|++.+.. .++||+|+ |-+--|...+ +.+.++|++||++||+|.+++.+. +..-....-.++.++||
T Consensus 104 d~~T~nid~~~ie~aIt~~tKAIi---pVhl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF 180 (374)
T COG0399 104 DPDTLNIDPDLIEAAITPRTKAII---PVHLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSF 180 (374)
T ss_pred CCcccCCCHHHHHHHcccCCeEEE---EehhccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEe
Confidence 8776655 36799999 4446777777 778888999999999999998542 22222112234566666
Q ss_pred --ccccCCCCceEEEEeecCHHHHHHHHHHHhhccc------------c-CChHHHHHHHHHhcccCCCchhHHHHHHHH
Q 018172 186 --SKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI------------G-VSKESQLRAAKILGIVSDDYPNFFEYGRRL 250 (360)
Q Consensus 186 --sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~------------~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (360)
+|.++ +| ..|.+++.++++.+.++.++..+.. + ...++-..|+..+..+ +.+++...+
T Consensus 181 ~~~K~it-tg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL-----~~l~~~~~~ 253 (374)
T COG0399 181 HATKNLT-TG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQL-----ERLDEINER 253 (374)
T ss_pred cCCCCcc-cc-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 68888 66 6799999899999999877754332 1 1123333333334332 455555555
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCcc-cccccccCCCCCCcccccCCc---h-HHHHHHHHhhCee----eeCCCCC--
Q 018172 251 MSERWNMLRQVIRQSGVFGLPEYPLEY-CNFTGKFTNSHPGFAWLESKE---D-EDCEKLLRAERIM----ARGGRRF-- 319 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~gI~----~~pg~~f-- 319 (360)
-++..+++.+.|++++++..+...... .+|. +..+.++. . +.+...|+++||. .+|-...
T Consensus 254 R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~---------~~~i~~~~~~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~ 324 (374)
T COG0399 254 RREIAQIYAEALKGLPGITLPPEPDGAVHAWH---------LYTILVDEEGISRDALMESLKEAGVGAVVYFRPLHLQPA 324 (374)
T ss_pred HHHHHHHHHHHhhcCCCccccCCCCCceeeee---------eeEEEecCCCCCHHHHHHHHHhCCCCceEEeeccccchh
Confidence 566666777888887655554433221 1111 12233332 1 7889999999554 4553211
Q ss_pred ----C-----C-------CCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 320 ----G-----A-------DAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 320 ----~-----~-------~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
+ . ....+++.+.. +++++++.++++++++.+
T Consensus 325 ~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~ 373 (374)
T COG0399 325 YRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS 373 (374)
T ss_pred hhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 0 0 12357776644 899999999999998864
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-17 Score=153.55 Aligned_cols=287 Identities=17% Similarity=0.171 Sum_probs=190.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~ 113 (360)
...|+++++++.+. +.+++++++..|+..++.+++++||+ |+.+...|......++. .|.++..
T Consensus 57 ~~~le~~la~Le~g--------~~a~~~~SGmaAi~~~l~~ll~~Gd~----iv~~~~~Y~~t~~~~~~~l~~~gv~v~~ 124 (386)
T PF01053_consen 57 VRALEQRLAALEGG--------EDALLFSSGMAAISAALLALLKPGDH----IVASDDLYGGTYRLLEELLPRFGVEVTF 124 (386)
T ss_dssp HHHHHHHHHHHHT---------SEEEEESSHHHHHHHHHHHHS-TTBE----EEEESSSSHHHHHHHHHCHHHTTSEEEE
T ss_pred HHHHHHHHHHhhcc--------cceeeccchHHHHHHHHHhhcccCCc----eEecCCccCcchhhhhhhhcccCcEEEE
Confidence 37889999988874 46888889999999999999999998 99999999998877665 5999888
Q ss_pred ecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcC-cEEEEeecccCCCCCcCCCCCCccEEEeccccc
Q 018172 114 WDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAE-GKLIHDLAYYWPQYTPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~-~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~ 188 (360)
++. |.+.+.. ++++++|++.+|+||+..+.+ +.+.++++++| +++++|+.+..+- ..-+-..+.++++.|.+|.
T Consensus 125 ~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~-~~~pL~~GaDivv~S~TKy 203 (386)
T PF01053_consen 125 VDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPY-NQNPLELGADIVVHSATKY 203 (386)
T ss_dssp ESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTT-TC-GGGGT-SEEEEETTTT
T ss_pred eCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecccccee-eeccCcCCceEEEeecccc
Confidence 865 3455544 568999999999999999998 78888899898 9999999987541 1112345689999999998
Q ss_pred cC-CCCceEEEEeecC-HHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 189 TG-HAGSRIGWALVKD-TEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 189 ~~-~~G~r~G~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
++ ....=.|.+++++ .++.+.++......+...++.....+...++ . +.-..++..++.+.+.+.|.+++
T Consensus 204 l~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~-------T-l~~R~~~~~~nA~~lA~~L~~hp 275 (386)
T PF01053_consen 204 LSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLR-------T-LPLRMERQNENAEALAEFLEEHP 275 (386)
T ss_dssp TTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHT-------T-HHHHHHHHHHHHHHHHHHHHTST
T ss_pred ccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCC-------c-HHHHHHHHHHHHHHHHHHHHhCC
Confidence 85 3333367777655 6888888877766666777777766666554 2 33344455667788999999998
Q ss_pred CcccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCC----------------------
Q 018172 267 VFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRF---------------------- 319 (360)
Q Consensus 267 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f---------------------- 319 (360)
.+..+.+++.. +........+.+..+.+.+++. +.+.+.+.+-.+. ..|..+
T Consensus 276 ~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~l~-~~~~SlGg~~SLi~~p~~~~h~~~~~e~ 354 (386)
T PF01053_consen 276 KVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALKLF-SIAPSLGGVESLISHPASTSHRSLSPEE 354 (386)
T ss_dssp TEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-SSS-EESSS-SSSS-EEEETTCTTTTTSCHHH
T ss_pred CCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhhhH-hhhhhcCCcccccccccchhhccCChhh
Confidence 66644333211 1111222334445788888887 4666666555553 112112
Q ss_pred ----CCCCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 320 ----GADAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 320 ----~~~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
|..++.+|||++. |+.+.+++.|++.+
T Consensus 355 ~~~~Gi~~~liRlSvGl--Ed~~dLi~Dl~~AL 385 (386)
T PF01053_consen 355 RAEAGISDGLIRLSVGL--EDPDDLIADLEQAL 385 (386)
T ss_dssp HHHTTS-TTEEEEE--S--S-HHHHHHHHHHHH
T ss_pred hhccCCCCCeeEEEecc--CCHHHHHHHHHHhc
Confidence 2235689999866 33455566665554
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=155.26 Aligned_cols=268 Identities=14% Similarity=0.033 Sum_probs=173.3
Q ss_pred CCcEEEcCChHHHHHHHHHhhcCC----CCCC-------CceEEEeCCCCCCcHHHHHHhCCe-------------eeee
Q 018172 59 GRHIVIGTGSTQLYQAALYALSSP----GGPE-------PISVVSAAPYYSQYPAETDYLRSG-------------LYKW 114 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~l~~~----gd~~-------~~~vl~~~p~~~~~~~~~~~~g~~-------------~~~~ 114 (360)
.+.|++++++++++..+++....- +... +.+|+.-..+|......+...... +..+
T Consensus 72 ~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~ 151 (382)
T PLN00144 72 ADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFV 151 (382)
T ss_pred CCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEe
Confidence 358999999999999988866310 1000 124888887787765444332211 1112
Q ss_pred cC-Ccccccc---CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCc--CC---CCCCccE
Q 018172 115 DG-DANTFDK---NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTP--IT---GAADHDI 180 (360)
Q Consensus 115 ~~-~~~~~~~---~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~--~~---~~~~~~i 180 (360)
+. |.+.++. ..++.+|++.--+||.|...+ +.+.++|+++|+++|+||+|.+..... .. .....+
T Consensus 152 ~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD- 230 (382)
T PLN00144 152 EYGNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD- 230 (382)
T ss_pred CCCCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC-
Confidence 11 2222221 245667766545788555432 367789999999999999998532111 11 111122
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQ 260 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (360)
+.||||.++ +|+|+||+++ ++++++.+.......+++.|++++.++.+.++.+.+. ...+..++.-++.++.+.+
T Consensus 231 -i~t~sK~l~-~G~pig~v~~-~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~--~~~~~~~~~g~~l~~~l~~ 305 (382)
T PLN00144 231 -IMTLAKPLA-GGLPIGAVLV-TEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKP--GFLASVAKKGEYLRELLRR 305 (382)
T ss_pred -EEEeccccc-CCcceEEEEE-cHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHH
Confidence 889999999 8999999999 8999988865555567889999999999877766443 3333333333333444555
Q ss_pred HHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC--ChHHH
Q 018172 261 VIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGADAKYARVSMLS--REEIF 337 (360)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~--~~e~~ 337 (360)
.+.+++.+.- +.+.+.++|+.+... ..+...+.++||.+.|+. . .+.+|++++. +++++
T Consensus 306 ~~~~~~~~~~--------------vrg~G~~~~l~l~~~~~~~~~~~~~~Gv~i~~~~---~-~~~lrl~p~~~~~~~~i 367 (382)
T PLN00144 306 KLGGNPHVKE--------------VRGVGLLVGIQLDVPAGPLVDACRDSGLLVLTAG---K-GDVVRLVPPLVISEAEL 367 (382)
T ss_pred HHhhCCCcee--------------eecCceEEEEEecCccHHHHHHHHHCCeEEeecC---C-CCEEEEeCCCccCHHHH
Confidence 5555532211 113445778877433 667788889999999862 1 4689998855 89999
Q ss_pred HHHHHHHHHHHhc
Q 018172 338 NIFLERLSAIQGG 350 (360)
Q Consensus 338 ~~~~~~l~~~~~~ 350 (360)
++++++|.+++.+
T Consensus 368 ~~~~~~l~~~l~~ 380 (382)
T PLN00144 368 EQAVEILADCLPA 380 (382)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-17 Score=155.93 Aligned_cols=266 Identities=16% Similarity=0.059 Sum_probs=170.9
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CC-------------eeeeecCC-------
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RS-------------GLYKWDGD------- 117 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~------- 117 (360)
+.+++++++++++..+++.... .|.. +|+.-..+|......+... +- .+..++..
T Consensus 95 ~~v~f~~sGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (420)
T TIGR00700 95 KKSVFFNSGAEAVENAVKIARSYTGRP---GVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGL 171 (420)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCC---cEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccc
Confidence 4799999999999998887642 2322 3777777777765433332 11 01112110
Q ss_pred ----------ccccc------c-CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCc-CC-
Q 018172 118 ----------ANTFD------K-NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTP-IT- 173 (360)
Q Consensus 118 ----------~~~~~------~-~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~-~~- 173 (360)
.+.++ . .++..+|++.-...-+|.+++ +.+.++|+++|+++|+||+|.+..... ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a 251 (420)
T TIGR00700 172 LDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFA 251 (420)
T ss_pred cccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHH
Confidence 00110 1 234556666555566888765 467789999999999999998532211 11
Q ss_pred -CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHH
Q 018172 174 -GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMS 252 (360)
Q Consensus 174 -~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 252 (360)
...+....+.++||.++ +|+|+||+++ ++++++.+.......+++.|+++|.++.+.++.+.+. ...+..++.-.
T Consensus 252 ~~~~~~~pDi~~lsK~l~-~G~pig~v~~-~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~--~~~~~~~~~g~ 327 (420)
T TIGR00700 252 CEHEGPEPDLITTAKSLA-DGLPLSGVTG-RAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESE--GLIERARQIGR 327 (420)
T ss_pred HhhcCCCCCEEEeecccc-CCcceEEEEe-cHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhc--cHHHHHHHHHH
Confidence 22233344667999999 9999999999 8999988865555578889999999998888765432 33344433333
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC-------Cch---HHHHHHHHhhCeeeeCCCCCCCC
Q 018172 253 ERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES-------KED---EDCEKLLRAERIMARGGRRFGAD 322 (360)
Q Consensus 253 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~l~~~gI~~~pg~~f~~~ 322 (360)
+.++.+.+....++.+....+.| .++|+.+ ++. ..+...+.++||.+.|+..|+
T Consensus 328 ~l~~~L~~l~~~~~~~~~vrg~G--------------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~-- 391 (420)
T TIGR00700 328 LVTDRLTTLKAVDPRIGDVRGLG--------------AMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMFG-- 391 (420)
T ss_pred HHHHHHHHHHhhCCCEEEeeccc--------------eEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCCC--
Confidence 34444444444444333233333 3445543 121 445566678999999987775
Q ss_pred CCeEEEEec--CChHHHHHHHHHHHHHHh
Q 018172 323 AKYARVSML--SREEIFNIFLERLSAIQG 349 (360)
Q Consensus 323 ~~~~R~s~~--~~~e~~~~~~~~l~~~~~ 349 (360)
+++||+++ .+++++++++++|.+++.
T Consensus 392 -~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 392 -NIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred -CEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 59999975 389999999999999874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-17 Score=155.67 Aligned_cols=264 Identities=13% Similarity=0.070 Sum_probs=169.9
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-------CCCCCCceEEEeCCCCCCcHHH-HHHhCCe------------eeeecC-Cc
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-------PGGPEPISVVSAAPYYSQYPAE-TDYLRSG------------LYKWDG-DA 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-------~gd~~~~~vl~~~p~~~~~~~~-~~~~g~~------------~~~~~~-~~ 118 (360)
+.+++++++++++..+++.+.. +|.. +|+..+-+|...... +...+.. +..++. |.
T Consensus 93 ~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~---~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 169 (397)
T TIGR03246 93 DKVFFCNSGAEANEAALKLARRYALDKHGADKS---EIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDL 169 (397)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCC---EEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCCH
Confidence 4799999999999999997721 2222 377777666665433 3332221 112221 22
Q ss_pred ccccc--CCCeeEEEEcCCCCCCcccc-h----HHHHHHhhhcCcEEEEeecccCCCCC-cCC--CCCCccEEEeccccc
Q 018172 119 NTFDK--NNGAYIEVVNSPNNPDGTIR-E----AVLAKVNRSAEGKLIHDLAYYWPQYT-PIT--GAADHDIMLFTLSKC 188 (360)
Q Consensus 119 ~~~~~--~~~~~~i~~~~p~NPtG~~~-~----~~~~~~~~~~~~~li~D~ay~~~~~~-~~~--~~~~~~i~~~S~sK~ 188 (360)
+.++. ++++++|++..++++.|... + +.+.++|+++|+++|+||+|.+.... ... ...+...-+.+++|.
T Consensus 170 ~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~~K~ 249 (397)
T TIGR03246 170 AAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKA 249 (397)
T ss_pred HHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEeehh
Confidence 22222 34678888886666667664 3 46778999999999999999632111 110 111222224489999
Q ss_pred cCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC-
Q 018172 189 TGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV- 267 (360)
Q Consensus 189 ~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~- 267 (360)
++ .|+++||+++ ++++++.+.......+++.+++.+.++.+.++.+.+ ++..+.++++.+++.+.|+++..
T Consensus 250 lg-gG~pigav~~-~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~------~~l~~~~~~~~~~l~~~L~~l~~~ 321 (397)
T TIGR03246 250 LG-GGFPIGAMLT-TTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNT------PELLAGVKQRHDLFVDGLEKINAR 321 (397)
T ss_pred hh-CCcceeEEEE-cHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhh------ccHHHHHHHHHHHHHHHHHHHHhc
Confidence 98 8999999999 888888886544445677889999998888875432 34667777888888888877631
Q ss_pred cccCCCCCcccccccccCCCCCCcccccCCc-----hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEE--ecCChHHHHHH
Q 018172 268 FGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----DEDCEKLLRAERIMARGGRRFGADAKYARVS--MLSREEIFNIF 340 (360)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s--~~~~~e~~~~~ 340 (360)
..+.. .+++.+.++.+.+.+ ...+.+.|.++||.+.+. + .+++|++ +..++++++++
T Consensus 322 ~~~~~-----------~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~---g--~~~lR~~p~~~~t~~~i~~~ 385 (397)
T TIGR03246 322 YNVFS-----------EIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIA---G--PNVVRFAPSLVISDDDIDEG 385 (397)
T ss_pred CCCeE-----------eeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeec---C--CCEEEEeCCCCCCHHHHHHH
Confidence 00000 011222233333321 256667788899998762 2 4689995 44499999999
Q ss_pred HHHHHHHHhc
Q 018172 341 LERLSAIQGG 350 (360)
Q Consensus 341 ~~~l~~~~~~ 350 (360)
+++|.+++.+
T Consensus 386 ~~~l~~~l~~ 395 (397)
T TIGR03246 386 LARFERAIEQ 395 (397)
T ss_pred HHHHHHHHHH
Confidence 9999998864
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=151.61 Aligned_cols=283 Identities=13% Similarity=0.078 Sum_probs=174.9
Q ss_pred cHHHHH----HHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc-HHHHHH--hCCe
Q 018172 38 VPELAE----AINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY-PAETDY--LRSG 110 (360)
Q Consensus 38 ~~~lr~----~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~-~~~~~~--~g~~ 110 (360)
..+|++ .+++++|. ++.++.+++++.++..++.+++++||+ |+++..+|.+. ...++. .+..
T Consensus 72 ~~~lE~~~~~~la~l~g~-------~~alv~~~SG~~A~~~~l~al~~~GD~----Vl~~~~~~~~~~~~g~~~~~~~~~ 140 (416)
T PRK13034 72 VDEVEALAIERAKQLFGC-------DYANVQPHSGSQANGAVYLALLKPGDT----ILGMSLSHGGHLTHGAKVSLSGKW 140 (416)
T ss_pred HHHHHHHHHHHHHHHhCC-------CceEEecCCcHHHHHHHHHHhcCCCCE----EEEcCccceeeeecCCcceeccce
Confidence 478888 99999984 444455677899999999999999998 99999998773 222221 1221
Q ss_pred e--eeec-------CCcccccc---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC-cC-C-C
Q 018172 111 L--YKWD-------GDANTFDK---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT-PI-T-G 174 (360)
Q Consensus 111 ~--~~~~-------~~~~~~~~---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~-~~-~-~ 174 (360)
. ..+. +|.+.++. ..++++|++..+. +|...+ +.+.++|+++|+++++|++|+.+... .. . .
T Consensus 141 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~--~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~ 218 (416)
T PRK13034 141 YNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSA--YPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNP 218 (416)
T ss_pred eeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCc--cccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCC
Confidence 1 2222 23222221 2367888876655 455545 66777888899999999998753221 11 1 1
Q ss_pred CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhcc-ccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHH
Q 018172 175 AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGS-IGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 175 ~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
....+++++|++|.++.+. .|++++.++.+.+.++....... .+.+++...++...+....+ ....+.++++.+
T Consensus 219 ~~~~Di~~~s~~K~l~g~~--GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~---~~~~~~~~~l~~ 293 (416)
T PRK13034 219 FPHAHVVTTTTHKTLRGPR--GGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQ---PEFKTYAKQVIA 293 (416)
T ss_pred CCCceEEEEeCcccCCCCC--CeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhC---hhHHHHHHHHHH
Confidence 1346899999999984222 38888755565555554332211 12223333333223332111 223456788999
Q ss_pred HHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---h-HHHHHHHHhhCeeeeCC-CC----CCCCCC
Q 018172 254 RWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---D-EDCEKLLRAERIMARGG-RR----FGADAK 324 (360)
Q Consensus 254 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~gI~~~pg-~~----f~~~~~ 324 (360)
+.+++.+.|++. ++.+..+. +.+..+.+.+.+ . ..+.+.|+++||.+.+- .. +...+.
T Consensus 294 ~a~~l~~~L~~~-G~~~~~~~------------~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~ 360 (416)
T PRK13034 294 NAQALAEVLKER-GYDLVSGG------------TDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTS 360 (416)
T ss_pred HHHHHHHHHHHc-CCEeccCC------------CCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCC
Confidence 999999999887 44443221 111234444433 2 66678899999998741 11 111245
Q ss_pred eEEEEecC------ChHHHHHHHHHHHHHHhch
Q 018172 325 YARVSMLS------REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 325 ~~R~s~~~------~~e~~~~~~~~l~~~~~~~ 351 (360)
.+|+++.. +++++++++++|.+++.+.
T Consensus 361 ~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~~ 393 (416)
T PRK13034 361 GIRIGTPAGTTRGFGEAEFREIANWILDVLDDL 393 (416)
T ss_pred eeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhcC
Confidence 79998633 5899999999999998753
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.4e-17 Score=152.49 Aligned_cols=253 Identities=13% Similarity=0.126 Sum_probs=165.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH----HHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP----AETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~----~~~~~~g~~~~~ 113 (360)
..++++.+++++|. ++.|++++|+ .++.+++..++++||+ |+++...|.+.. ..+...|++++.
T Consensus 71 ~~~le~~la~l~g~-------~~~v~fsSG~-~Ai~~al~~ll~~Gd~----VI~~~~~y~~t~~~~~~~l~~~Gi~v~~ 138 (437)
T PRK05613 71 VEALENRIASLEGG-------VHAVAFASGQ-AAETAAILNLAGAGDH----IVTSPRLYGGTETLFLVTLNRLGIEVTF 138 (437)
T ss_pred HHHHHHHHHHHhCC-------CeEEEeCCHH-HHHHHHHHHhcCCCCE----EEECCCccHHHHHHHHHHHHhcCeEEEE
Confidence 48899999999984 3456666665 7778888888999998 999999999874 345667999998
Q ss_pred ec--CCcccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccc
Q 018172 114 WD--GDANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~--~~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~ 188 (360)
++ .|.+.+.. ++++++|++.++.||+|.+.+ +.+.++|+++|+++|+|.+++.+.. ..+...+.+++++|++|.
T Consensus 139 vd~~~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~-~~p~~~GaDivv~S~~K~ 217 (437)
T PRK05613 139 VENPDDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL-VRPLELGADVVVASLTKF 217 (437)
T ss_pred ECCCCCHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc-cChHHhCCCEEEeeccce
Confidence 86 23344433 567899999999999998888 7888889889999999999875432 122245679999999999
Q ss_pred cCCCCceEEEEeecCHH-----------------------------------HH-HHHHHHHhhccccCChHHHHHHHHH
Q 018172 189 TGHAGSRIGWALVKDTE-----------------------------------VA-RKMTRFIELGSIGVSKESQLRAAKI 232 (360)
Q Consensus 189 ~~~~G~r~G~~~~~~~~-----------------------------------~~-~~l~~~~~~~~~~~~~~~~~~~~~~ 232 (360)
++..|--+|.+++.+.+ +. +.........+.+.++.....+...
T Consensus 218 l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rg 297 (437)
T PRK05613 218 YTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQG 297 (437)
T ss_pred ecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcc
Confidence 88666555654442211 00 0111222334555666666555443
Q ss_pred hcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcc----ccccccc-CCCCCCcccccCCch-HHHHHHH
Q 018172 233 LGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEY----CNFTGKF-TNSHPGFAWLESKED-EDCEKLL 306 (360)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l 306 (360)
++ -+.-..++..++...+.+.|.++|.+..+.+++.. +...... ..+.+..+.+.++++ +.+.+.+
T Consensus 298 l~--------TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~ 369 (437)
T PRK05613 298 LD--------TLSLRLERHNENAIKVAEFLNNHEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKGGKDEAWAFI 369 (437)
T ss_pred cC--------cHHHHHHHHHHHHHHHHHHHHcCCCcceEECCCCCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHHH
Confidence 33 23344455577778899999999876655444321 1111111 112355677777643 4444444
Q ss_pred HhhCe
Q 018172 307 RAERI 311 (360)
Q Consensus 307 ~~~gI 311 (360)
.+-.+
T Consensus 370 ~~l~l 374 (437)
T PRK05613 370 DALKL 374 (437)
T ss_pred HhCCc
Confidence 44343
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-16 Score=148.58 Aligned_cols=279 Identities=17% Similarity=0.132 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh---------cCCCCCCCceEEEeCCCCCCcHHHHHHhCC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL---------SSPGGPEPISVVSAAPYYSQYPAETDYLRS 109 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l---------~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~ 109 (360)
.+|+++++++++. +++++++|+|+++..++.++ +++||+ |+++.|+|..+...+...|+
T Consensus 66 ~~fe~~lA~~~g~--------~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~----VIv~~~t~~a~~~~v~~~G~ 133 (438)
T PRK15407 66 DAFEKKLAEFLGV--------RYALLVNSGSSANLLAFSALTSPKLGDRALKPGDE----VITVAAGFPTTVNPIIQNGL 133 (438)
T ss_pred HHHHHHHHHHhCC--------CeEEEECCHHHHHHHHHHHHhhccccccCCCCCCE----EEECCCCcHHHHHHHHHcCC
Confidence 8999999999985 36889999999999988876 478888 99999999999999999999
Q ss_pred eeeeecCCcccccc---------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-CCcC-CCCCC
Q 018172 110 GLYKWDGDANTFDK---------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ-YTPI-TGAAD 177 (360)
Q Consensus 110 ~~~~~~~~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~-~~~~-~~~~~ 177 (360)
+++.++++.+.+.. ++++++|+++++ +|...+ +.+.++|+++|+++|+|++|+.+. +... .+..+
T Consensus 134 ~pv~vdvd~~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g 210 (438)
T PRK15407 134 VPVFVDVELPTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG 210 (438)
T ss_pred EEEEEecCCCcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC
Confidence 99988876433322 368899988764 555555 677788898999999999998543 2211 12222
Q ss_pred ccEEEeccc--cccCCCCceEEEEeecCHHHHHHHHHHHhhccc-----------------------------------c
Q 018172 178 HDIMLFTLS--KCTGHAGSRIGWALVKDTEVARKMTRFIELGSI-----------------------------------G 220 (360)
Q Consensus 178 ~~i~~~S~s--K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~-----------------------------------~ 220 (360)
++.++||+ |.+. +|- .|++++.++++.+.++..+..+.. +
T Consensus 211 -d~~~fSf~~~k~~~-~ge-GG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 287 (438)
T PRK15407 211 -DIATLSFYPAHHIT-MGE-GGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLG 287 (438)
T ss_pred -ceEEEeCCCCCCcc-ccC-ceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccc
Confidence 56677775 6665 454 599999888888888766543210 0
Q ss_pred CC-hHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC-cccCC-CCCcccccccccCCCCCCcccccCC
Q 018172 221 VS-KESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV-FGLPE-YPLEYCNFTGKFTNSHPGFAWLESK 297 (360)
Q Consensus 221 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
.| .++...|+-.+..+ +.+++..++-+++.+++.+.|..+++ +..+. +.+...+|. .+.+.++
T Consensus 288 ~n~rmsel~AAig~~qL-----~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~ 353 (438)
T PRK15407 288 YNLKITDMQAAIGLAQL-----EKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWF---------GFPITVK 353 (438)
T ss_pred cccCccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEE---------EEEEEEC
Confidence 00 12222233333322 45556666666666777777877653 22222 122211110 1122222
Q ss_pred c-----hHHHHHHHHhhCeeeeCCCC--------CCC---------------CCCeEEEEecC--ChHHHHHHHHHHHHH
Q 018172 298 E-----DEDCEKLLRAERIMARGGRR--------FGA---------------DAKYARVSMLS--REEIFNIFLERLSAI 347 (360)
Q Consensus 298 ~-----~~~~~~~l~~~gI~~~pg~~--------f~~---------------~~~~~R~s~~~--~~e~~~~~~~~l~~~ 347 (360)
+ .+.+.+.|.++||.+++... |.. ....+-+.+.. ++++++..+++++++
T Consensus 354 ~~~~~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~ 433 (438)
T PRK15407 354 EDAGFTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEF 433 (438)
T ss_pred CcCCCCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHH
Confidence 1 27888899999998764321 100 01124444433 889999999999998
Q ss_pred Hh
Q 018172 348 QG 349 (360)
Q Consensus 348 ~~ 349 (360)
+.
T Consensus 434 ~~ 435 (438)
T PRK15407 434 FG 435 (438)
T ss_pred Hh
Confidence 75
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-16 Score=152.53 Aligned_cols=280 Identities=13% Similarity=0.033 Sum_probs=181.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEc---CChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----------h
Q 018172 41 LAEAINNLHHVVDNAVSDGRHIVIG---TGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----------L 107 (360)
Q Consensus 41 lr~~la~~~~~~~~~~~~~~~i~~t---~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----------~ 107 (360)
.|+.++++++. +++++.++ +|+++++..++.+++++||+ |++....|......... .
T Consensus 85 ar~~~a~lf~a------~~~~~~~~~~~~sgt~an~~v~~al~~~gd~----Ii~~~~ehg~~l~~~~~l~~~~~~~~~~ 154 (452)
T PTZ00094 85 CQKRALEAFGL------DPEEWGVNVQPYSGSPANFAVYTALLQPHDR----IMGLDLPSGGHLTHGFYTAKKKVSATSI 154 (452)
T ss_pred HHHHHHHHhCC------CcccceeecCCCchHHHHHHHHHHhcCCCCE----EEecccccCCccccccccccccccccee
Confidence 56688888886 44567666 78899999999999999998 99988888776554321 1
Q ss_pred CCeeeeecCCcc------cccc---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCC---C
Q 018172 108 RSGLYKWDGDAN------TFDK---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPIT---G 174 (360)
Q Consensus 108 g~~~~~~~~~~~------~~~~---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~---~ 174 (360)
++++..++.+.+ .+.. ..+++++++. ++.+|...+ +.+.++|+++|+++++|++|+.+..+... .
T Consensus 155 ~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~ 232 (452)
T PTZ00094 155 YFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSP 232 (452)
T ss_pred eeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCC
Confidence 133334444322 2211 2356777654 234998888 77888899899999999999865442211 1
Q ss_pred CCCccEEEecccccc-CCCCceEEEEeecCHHHHHHHHHHHh-----hccccCChHHHHHHHHHhcccCCCchhHHHHHH
Q 018172 175 AADHDIMLFTLSKCT-GHAGSRIGWALVKDTEVARKMTRFIE-----LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGR 248 (360)
Q Consensus 175 ~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (360)
..+.+++++|++|++ |+.| |++++ ..++.+.+..... ....+.+.....++.++++.+.. ...++.+
T Consensus 233 ~~~~D~l~~S~hK~l~GP~G---g~l~~-~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~---~~~~~~~ 305 (452)
T PTZ00094 233 FPYADVVTTTTHKSLRGPRS---GLIFY-RKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQS---PEWKEYA 305 (452)
T ss_pred CCCCcEEEcCCccCCCCCCc---eEEEE-ecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhC---hhHHHHH
Confidence 236789999999976 5443 87777 4444443322111 11124455555556666765532 4567788
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeee-eCCCCCC---CC
Q 018172 249 RLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMA-RGGRRFG---AD 322 (360)
Q Consensus 249 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~-~pg~~f~---~~ 322 (360)
+++.++.+++.+.|++. ++.+..+... .....+.+..++ .+.+..+|.++||.+ +++...+ ..
T Consensus 306 ~~i~~l~~~l~~~L~~~-g~~v~~~~~~----------~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~ 374 (452)
T PTZ00094 306 KQVLKNAKALAAALEKR-GYDLVTGGTD----------NHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALN 374 (452)
T ss_pred HHHHHHHHHHHHHHHhC-CcEEecCCCC----------CceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCC
Confidence 89999999999999876 4444322100 011122233332 378888898889999 4554432 13
Q ss_pred CCeEEEEecC------ChHHHHHHHHHHHHHHhc
Q 018172 323 AKYARVSMLS------REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 323 ~~~~R~s~~~------~~e~~~~~~~~l~~~~~~ 350 (360)
++.+|+|+.. +++|++++++.|.+++..
T Consensus 375 ~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 375 PSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred CCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 5789999843 389999999999999974
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-16 Score=147.73 Aligned_cols=287 Identities=12% Similarity=0.111 Sum_probs=187.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEc-CChHHHHHHHHHhhcCCCCCCCceEEEeCCCCC-CcHHHHHHh--CCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIG-TGSTQLYQAALYALSSPGGPEPISVVSAAPYYS-QYPAETDYL--RSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t-~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~-~~~~~~~~~--g~~~~~ 113 (360)
+.+.|+.++++++. .++++|+++ +|+|.+++.++..++.+ +. +++..-.|. .+...+... +.++..
T Consensus 43 ~~~~r~~l~~l~~~-----~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~----l~i~~G~~~~~~~~~a~~~~~~~~~~~ 112 (361)
T TIGR01366 43 VGRVREGLAELFSL-----PDGYEVILGNGGATAFWDAATFGLIEK-KS----LHLSFGEFSSKFAKAVKLAPWLGEPII 112 (361)
T ss_pred HHHHHHHHHHHhCC-----CCCceEEEECCchhHHHHHHHHhcccc-cc----cEEecCHHHHHHHHHHHhhhccCCceE
Confidence 38889999999985 123478886 66999999999999743 22 445555554 233444442 235555
Q ss_pred ecCCc-cccc--cCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGDA-NTFD--KNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~~-~~~~--~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+. +.++ .++++++|++++-+|.||...+ +++ ++++|+++++|.+.+.++.+...+. .+++++|.+|.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~~--~D~~~~s~~K~l 187 (361)
T TIGR01366 113 VTADPGSAPEPQADPGVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIAE--TDVYYFAPQKNF 187 (361)
T ss_pred EecCCCCCCCCccCCCCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCCHHH--CCEEEEEchhhc
Confidence 55442 2222 2568999999999999999998 333 4669999999999987765554443 789999999999
Q ss_pred CCCCceEEEEeecCHHHHHHHHHHHh---------------------hccccCChHHHHHHHHHhcccCCCchhHHHHHH
Q 018172 190 GHAGSRIGWALVKDTEVARKMTRFIE---------------------LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGR 248 (360)
Q Consensus 190 ~~~G~r~G~~~~~~~~~~~~l~~~~~---------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (360)
|.+| .++.++. ++++.+.+..... .+..+++.....++.++++.+... .-++...
T Consensus 188 g~~~-Gl~~~~~-s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~--gg~e~~~ 263 (361)
T TIGR01366 188 ASDG-GLWLAIM-SPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGN--GGLDWAV 263 (361)
T ss_pred CCCC-ceEEEEE-CHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHc--cCHHHHH
Confidence 9775 2555566 6777766542210 011222333333556677665431 2377888
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEE
Q 018172 249 RLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARV 328 (360)
Q Consensus 249 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~ 328 (360)
++.+++.+++++.+.+.+++......... ..+..+.+.+.+--+.+++.+.|+++||.+.++... ...+.+|+
T Consensus 264 ~r~~~l~~~l~~~l~~~~~~~~~~~~~~~------~s~~v~~v~~~~g~~~~~v~~~L~~~gI~i~~~~~~-l~~~~vRi 336 (361)
T TIGR01366 264 ARTADSSSRLYSWAQERPYATPFVTDPGK------RSQVVGTIDFVDDIDAATVAKILRANGIVDTEPYRK-LGRNQLRV 336 (361)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCChhh------cccceEEEECCCccCHHHHHHHHHHCCCeeccCccc-cCCCcEEE
Confidence 99999999999999999754433211100 000111122211112377888889999999876422 23568999
Q ss_pred EecC--ChHHHHHHHHHHHHHHhc
Q 018172 329 SMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 329 s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
|+.. +++++++++++|++++++
T Consensus 337 s~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 337 AMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred EcCCCCCHHHHHHHHHHHHHHHhh
Confidence 9866 999999999999998765
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-16 Score=151.63 Aligned_cols=270 Identities=14% Similarity=0.087 Sum_probs=167.0
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CC-------------eeeeecCC-----cc
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RS-------------GLYKWDGD-----AN 119 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~-----~~ 119 (360)
+.+.++++++++...+++.... .|.. +|+.-..+|......+-.. +- .+..++.. ..
T Consensus 116 ~~v~f~~sGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (451)
T PRK06918 116 KKVLFLNSGAEAVENAVKIARKYTKRQ---GIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPE 192 (451)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHhCCC---cEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccc
Confidence 4799999999999999887642 1222 3887777777765443332 21 01111111 01
Q ss_pred cc-------------c------cCCCeeEEEEcCCCCCC-cccch-----HHHHHHhhhcCcEEEEeecccCCCCCc--C
Q 018172 120 TF-------------D------KNNGAYIEVVNSPNNPD-GTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTP--I 172 (360)
Q Consensus 120 ~~-------------~------~~~~~~~i~~~~p~NPt-G~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~--~ 172 (360)
+. + ..++..+.++..|.... |.+++ +.+.++|+++|+++|+||+|.+..... .
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~ 272 (451)
T PRK06918 193 GLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYF 272 (451)
T ss_pred cCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCcee
Confidence 10 0 01233455555665554 65554 356789999999999999998532211 1
Q ss_pred C-CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCC-CchhHHHHHHHH
Q 018172 173 T-GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD-DYPNFFEYGRRL 250 (360)
Q Consensus 173 ~-~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 250 (360)
. ...+..--+.|+||.++ +|+|+||+++ ++++++.+.......+++.+++.|.++.++++.+.+ .+.+++.++.+.
T Consensus 273 a~~~~~v~pDi~t~sK~l~-~G~pig~v~~-~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~ 350 (451)
T PRK06918 273 AIEHFDVVPDLITVSKSLG-AGVPISGVIG-RKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKV 350 (451)
T ss_pred hhHhcCCCCCEEeeehhhc-CCCccEEEEE-cHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 1 11221122568999999 9999999999 889988886555567889999999999888886633 222333333333
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccc-----cCCch---HHHHHHHHhhCeeeeCCCCCCCC
Q 018172 251 MSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWL-----ESKED---EDCEKLLRAERIMARGGRRFGAD 322 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~l~~~gI~~~pg~~f~~~ 322 (360)
++++.+ +...+++.+.-....|.++.+. +. ..++. ..+.+.+.++||.+.|+..|+
T Consensus 351 l~~~l~---~l~~~~~~~~~vrg~G~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~-- 414 (451)
T PRK06918 351 VMNRFE---EMKNKYNCIGDVRGLGAMCAFE-----------LVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYG-- 414 (451)
T ss_pred HHHHHH---HHHhhCCCceeeccceeEEEEE-----------EccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCC--
Confidence 333333 2222333222233344442221 11 11222 456667788999999976664
Q ss_pred CCeEEEEec--CChHHHHHHHHHHHHHHhch
Q 018172 323 AKYARVSML--SREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 323 ~~~~R~s~~--~~~e~~~~~~~~l~~~~~~~ 351 (360)
+++||+++ .+++++++++++|.+++.+.
T Consensus 415 -~~lrl~p~l~~t~~~id~~l~~l~~~l~~~ 444 (451)
T PRK06918 415 -NVIRVLMPLVITDEQLEEGLTIIEESLQAC 444 (451)
T ss_pred -CEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 58999874 48999999999999999764
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-16 Score=148.90 Aligned_cols=265 Identities=15% Similarity=0.063 Sum_probs=173.6
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCC-CCCceEEEeCCCCCCcHHHHHH-hCCee------------eeecC-Cccc
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGG-PEPISVVSAAPYYSQYPAETDY-LRSGL------------YKWDG-DANT 120 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd-~~~~~vl~~~p~~~~~~~~~~~-~g~~~------------~~~~~-~~~~ 120 (360)
+.+++++++++++..+++.... .|. ..+.+|+.-..+|......+-. .|... ..++. |.+.
T Consensus 99 ~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 178 (408)
T PRK04612 99 EKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEA 178 (408)
T ss_pred CEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHH
Confidence 5799999999999999887642 221 1112488888877776544332 22111 11111 1111
Q ss_pred ccc--CCCeeEEEEcCCCCCCcccch------HHHHHHhhhcCcEEEEeecccCCCCCc--CC-CCCCccEEEecccccc
Q 018172 121 FDK--NNGAYIEVVNSPNNPDGTIRE------AVLAKVNRSAEGKLIHDLAYYWPQYTP--IT-GAADHDIMLFTLSKCT 189 (360)
Q Consensus 121 ~~~--~~~~~~i~~~~p~NPtG~~~~------~~~~~~~~~~~~~li~D~ay~~~~~~~--~~-~~~~~~i~~~S~sK~~ 189 (360)
++. .++..+.++..|.+++|-+++ +.+.++|+++|+++|+||+|.+..... .. ...+.+..+.+|+|.+
T Consensus 179 l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l 258 (408)
T PRK04612 179 LEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKAL 258 (408)
T ss_pred HHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchh
Confidence 211 234577788888888886654 356788999999999999998432211 11 1234567789999999
Q ss_pred CCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc----
Q 018172 190 GHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS---- 265 (360)
Q Consensus 190 ~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---- 265 (360)
+ +|+++||+++ ++++++.+.......+++.+++.+.++.+.|+.+.+. +..++++++-+++.+.|+++
T Consensus 259 ~-~G~piga~~~-~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~------~l~~~~~~~g~~l~~~l~~l~~~~ 330 (408)
T PRK04612 259 G-GGFPIGAMLA-GPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASP------QIAANVARQSAALRAGLEALNAEF 330 (408)
T ss_pred c-CCCceEEEEE-CHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9 8999999998 7888888766555567788999999999999866432 34444555555555555443
Q ss_pred CCcccCCCCCcccccccccCCCCCCcccccCC----c-hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHH
Q 018172 266 GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK----E-DEDCEKLLRAERIMARGGRRFGADAKYARVSM--LSREEIFN 338 (360)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~ 338 (360)
+.+.-. .+.+.++.+.+. + ...+.+.+.++||.+.|. +.+.+|+.. ..++++++
T Consensus 331 ~~i~~v--------------rg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~-----g~~~lRl~Ppl~it~eeid 391 (408)
T PRK04612 331 GVFAQV--------------RGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQA-----GPDVLRFVPALNLTDAELA 391 (408)
T ss_pred CCeeee--------------eccceEEEEEecCchhhHHHHHHHHHHHCCeEEeeC-----CCCEEEEcCCccCCHHHHH
Confidence 222112 233334444442 1 156777888999999762 246899975 34999999
Q ss_pred HHHHHHHHHHhch
Q 018172 339 IFLERLSAIQGGS 351 (360)
Q Consensus 339 ~~~~~l~~~~~~~ 351 (360)
++++++.+.+.+.
T Consensus 392 ~~l~~l~~~l~~~ 404 (408)
T PRK04612 392 DGLARLRLALADY 404 (408)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998653
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=153.04 Aligned_cols=269 Identities=13% Similarity=0.047 Sum_probs=165.8
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-----CCCC-CCceEEEeCCCCCCcHHHHHHhCCe-------------eeeecC-Ccc
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-----PGGP-EPISVVSAAPYYSQYPAETDYLRSG-------------LYKWDG-DAN 119 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-----~gd~-~~~~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~-~~~ 119 (360)
+.+++++++++++..+++.... .|.. ...+|+...-+|......+.....+ +..++. |.+
T Consensus 133 ~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~ 212 (474)
T PLN02624 133 DMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGDLD 212 (474)
T ss_pred CeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCCCHH
Confidence 4789999999999999875542 1100 0123666666676654333222111 112221 222
Q ss_pred cccc-----CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCc--CC-CCCCccEEEeccc
Q 018172 120 TFDK-----NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTP--IT-GAADHDIMLFTLS 186 (360)
Q Consensus 120 ~~~~-----~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~--~~-~~~~~~i~~~S~s 186 (360)
.++. .+++.+|++..++|++|.+++ +.+.++|++||+++|+||+|.+..... .. ...+...-+.+++
T Consensus 213 ~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~ls 292 (474)
T PLN02624 213 ALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILG 292 (474)
T ss_pred HHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEec
Confidence 2211 256888999999999999877 356788999999999999998421111 11 1112122244478
Q ss_pred cccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHh--
Q 018172 187 KCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQ-- 264 (360)
Q Consensus 187 K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-- 264 (360)
|.++..++++|++++ ++++++.+.......+++.+++.+.++.+.++.+.+. . ..+...++.+.+.+.|.+
T Consensus 293 K~lggG~~pigav~~-~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~--~----l~~~~~~~~~~l~~~L~~l~ 365 (474)
T PLN02624 293 KALGGGVIPVSAVLA-DKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDE--K----LAERSAKLGQELRDQLQKIQ 365 (474)
T ss_pred ccccCCCCcceeeee-cHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhc--h----HHHHHHHHHHHHHHHHHHHH
Confidence 999966699999998 7888887765544456678999999999988865432 2 222333333344443333
Q ss_pred --cCC-cccCCCCCcccccccccCCCCCCcccccCC----ch-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe--cCCh
Q 018172 265 --SGV-FGLPEYPLEYCNFTGKFTNSHPGFAWLESK----ED-EDCEKLLRAERIMARGGRRFGADAKYARVSM--LSRE 334 (360)
Q Consensus 265 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~ 334 (360)
++. +....+.|.+.. ++++.+ .. ..+.+.|.++||.+.|+. .+++||++ ..++
T Consensus 366 ~~~~~~i~~vrg~G~~~~------------i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~~-----~~~lR~~p~l~~t~ 428 (474)
T PLN02624 366 KQFPKLIKEVRGRGLLNA------------VVLNSPKLGPVSAYDVCLKLKERGLLAKPTH-----DTIIRLAPPLSISE 428 (474)
T ss_pred HhCCCceEEEEeeEEEEE------------EEecCCCcChHHHHHHHHHHHhCCeEEecCC-----CCEEEEECCccCCH
Confidence 321 111122232211 122221 11 456667889999998852 56899986 4499
Q ss_pred HHHHHHHHHHHHHHhchh
Q 018172 335 EIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 335 e~~~~~~~~l~~~~~~~~ 352 (360)
+++++++++|.+++....
T Consensus 429 e~id~~l~~L~~~l~~~~ 446 (474)
T PLN02624 429 DELQECSKALSDVLEHDL 446 (474)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999997543
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-16 Score=149.33 Aligned_cols=266 Identities=12% Similarity=0.058 Sum_probs=171.7
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CC-------------eeeeecCC--c----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RS-------------GLYKWDGD--A---- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~--~---- 118 (360)
+.+++++++++++..+++.... .|.. +|+.-..+|......+-.. |. .+..++.. .
T Consensus 102 ~~~~f~~sGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~ 178 (421)
T PRK09792 102 AKTAFFTTGAEAVENAVKIARAHTGRP---GVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGIS 178 (421)
T ss_pred ceEEEeCChHHHHHHHHHHHHHhcCCC---eEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccccc
Confidence 4789999999999998887742 2322 4888887777765333222 21 11222221 1
Q ss_pred -----ccccc-------CCCeeEEEEcCCCCCCcccc-h----HHHHHHhhhcCcEEEEeecccCCCCCc--CC-CCCCc
Q 018172 119 -----NTFDK-------NNGAYIEVVNSPNNPDGTIR-E----AVLAKVNRSAEGKLIHDLAYYWPQYTP--IT-GAADH 178 (360)
Q Consensus 119 -----~~~~~-------~~~~~~i~~~~p~NPtG~~~-~----~~~~~~~~~~~~~li~D~ay~~~~~~~--~~-~~~~~ 178 (360)
+.++. ..+..+|++.-.++|+|..+ + +.+.++|+++|+++|+||++.+..... .. ...+.
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~ 258 (421)
T PRK09792 179 TQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYAD 258 (421)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCC
Confidence 11111 13456777766689999876 4 467789999999999999998532211 11 11111
Q ss_pred cEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 179 DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 179 ~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
.--+.+|+|.++ +|+++||+++ +.++++.+.......+++.|++++.++.+.++.+.+. .+++++++.-.+.++.+
T Consensus 259 ~pDi~t~gK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~--~~~~~~~~~g~~l~~~l 334 (421)
T PRK09792 259 KPDLMTMAKSLA-GGMPLSGVVG-NANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKE--SLCERANQLGQRLKNTL 334 (421)
T ss_pred CCcEEEeehhhc-CCCceEEEEE-cHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHH
Confidence 111689999999 9999999998 8999888765555567889999999888888876554 55666653333333333
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch----------HHHHHHHHhhCeeeeCCCCCCCCCCeEEE
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED----------EDCEKLLRAERIMARGGRRFGADAKYARV 328 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~gI~~~pg~~f~~~~~~~R~ 328 (360)
.+...+++.+ ..+. +.+.++|+.+++. ..+...+.++||.+.+. +...+.+||
T Consensus 335 ~~l~~~~p~v--~~vr------------G~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~---g~~~~~irl 397 (421)
T PRK09792 335 IDAKESVPAI--AAVR------------GLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTC---GAYGNVIRF 397 (421)
T ss_pred HHHHHhCCCc--ceec------------ccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeec---CCCCCEEEE
Confidence 3333345432 2222 3345677776421 45667778899998642 222468999
Q ss_pred EecC--ChHHHHHHHHHHHHHHh
Q 018172 329 SMLS--REEIFNIFLERLSAIQG 349 (360)
Q Consensus 329 s~~~--~~e~~~~~~~~l~~~~~ 349 (360)
.... ++++++++++++.+++.
T Consensus 398 ~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 398 LYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred eCCCcCCHHHHHHHHHHHHHHHh
Confidence 8643 89999999999999874
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=145.06 Aligned_cols=271 Identities=17% Similarity=0.129 Sum_probs=189.3
Q ss_pred CCcEEEcCChHHHHHHHHHhhcCCCC-CCCceEEEeCCCCCCcHHHHHHhCCeee-------------eec-CCcccccc
Q 018172 59 GRHIVIGTGSTQLYQAALYALSSPGG-PEPISVVSAAPYYSQYPAETDYLRSGLY-------------KWD-GDANTFDK 123 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~l~~~gd-~~~~~vl~~~p~~~~~~~~~~~~g~~~~-------------~~~-~~~~~~~~ 123 (360)
.+.|+++++++|++..+++...+-+. .+..+|+....+|..-.-.+-..+.+.+ .+| .|.+.++.
T Consensus 100 ~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ 179 (404)
T COG4992 100 ADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEA 179 (404)
T ss_pred ccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHH
Confidence 56899999999999999988743222 2223577777777655433333333332 111 12233322
Q ss_pred --CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCC-CCcCC--CCCCccEEEeccccccCCCC
Q 018172 124 --NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQ-YTPIT--GAADHDIMLFTLSKCTGHAG 193 (360)
Q Consensus 124 --~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~-~~~~~--~~~~~~i~~~S~sK~~~~~G 193 (360)
+++|.+|++-.-+---|++.+ +.++++|+++|+++|.||++.+-. ...+. ...+..-=+.++.|.+| .|
T Consensus 180 ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tlaK~Lg-GG 258 (404)
T COG4992 180 AIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALG-GG 258 (404)
T ss_pred HhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEeecccc-CC
Confidence 468999999888888998876 467789999999999999998522 11111 12222223567789999 99
Q ss_pred ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q 018172 194 SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEY 273 (360)
Q Consensus 194 ~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 273 (360)
+.+|.+++ .+...+.+......++++.|+++..++.++++.+.+. ..+++.++.=...++.|.+...+++.+.
T Consensus 259 ~PigA~la-~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e--~ll~~v~~~g~~~~~~L~~l~~~~~~v~---- 331 (404)
T COG4992 259 FPIGAMLA-TEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEE--GLLENVREKGEYLLQRLRELKRRYPLVK---- 331 (404)
T ss_pred ccceeeEE-chhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcch--hHHHHHHHHHHHHHHHHHHHhhcCCcee----
Confidence 99999999 6776777777777789999999999999999977664 5666555554444444444444443111
Q ss_pred CCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHH
Q 018172 274 PLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSM--LSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~ 348 (360)
.+++.+.++-+.+... ..+.+.++++|+++.+.. ++.+||.. ..++|+++++++++++++
T Consensus 332 ----------~vRG~GLmiGiel~~~~~a~~~~~~~~~~gvL~~~a~-----~~ViR~~PpL~i~~eei~~~~~~l~~~l 396 (404)
T COG4992 332 ----------EVRGRGLMIGIELKEPYRARDIVRALREEGVLVLPAG-----PNVIRFLPPLVITEEEIDEALDALERAL 396 (404)
T ss_pred ----------eeecceeEEEEEecCcccHHHHHHHHHHCCeEEecCC-----CCeEEecCCccCCHHHHHHHHHHHHHHH
Confidence 3446666777777654 788899999999998743 66999965 339999999999999999
Q ss_pred hchh
Q 018172 349 GGSI 352 (360)
Q Consensus 349 ~~~~ 352 (360)
.+..
T Consensus 397 ~~~~ 400 (404)
T COG4992 397 AAAS 400 (404)
T ss_pred HHhh
Confidence 8754
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-15 Score=138.58 Aligned_cols=254 Identities=14% Similarity=0.113 Sum_probs=174.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~ 113 (360)
...|+++++.+.+. + +.+.++++..|+..++..++++||+ |+++...|......+.. .|.++..
T Consensus 65 ~~~lE~~~a~LEg~-------~-~~~afsSGmaAI~~~~l~ll~~GD~----vl~~~~~YG~t~~~~~~~l~~~gi~~~~ 132 (396)
T COG0626 65 RDALEEALAELEGG-------E-DAFAFSSGMAAISTALLALLKAGDH----VLLPDDLYGGTYRLFEKILQKFGVEVTF 132 (396)
T ss_pred HHHHHHHHHHhhCC-------C-cEEEecCcHHHHHHHHHHhcCCCCE----EEecCCccchHHHHHHHHHHhcCeEEEE
Confidence 38899999999873 3 5777777899999999999999999 99999999988776544 6888887
Q ss_pred ecCCcc-cccc--C-CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccc
Q 018172 114 WDGDAN-TFDK--N-NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~~~~~-~~~~--~-~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~ 188 (360)
++.... .... . ++|++|++-+|+|||..+.+ +.+.++++++|+++|+|+.|..+- ..-+-..+.+|++.|.+|.
T Consensus 133 ~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~-~q~PL~~GaDIVvhSaTKy 211 (396)
T COG0626 133 VDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPV-LQRPLELGADIVVHSATKY 211 (396)
T ss_pred ECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccccc-ccChhhcCCCEEEEecccc
Confidence 764322 2222 2 58999999999999999999 788888998999999999988532 2222356789999999998
Q ss_pred cCC-CCceEEEEeecCHHHHHHHHHHHh-hccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 189 TGH-AGSRIGWALVKDTEVARKMTRFIE-LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 189 ~~~-~G~r~G~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
++- ...=.|.++++++++.+.+..... ..+...++.....+...++ . +.-.-++..++...+.+.|.+++
T Consensus 212 l~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlk-------T-L~~Rm~~~~~nA~~IA~~L~~~p 283 (396)
T COG0626 212 LGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLR-------T-LALRMERHNENALKIAEFLADHP 283 (396)
T ss_pred ccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccc-------h-HHHHHHHHHHHHHHHHHHHhcCC
Confidence 863 444456566556677777644444 3566677777766655444 2 23333444566788888888887
Q ss_pred CcccCCCCCcc----cccccccCCCCCCcccccCCchHHHHHHHHhhCee
Q 018172 267 VFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIM 312 (360)
Q Consensus 267 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~ 312 (360)
.+..+.++|-. +.+......+.+..+.+.+.+++.+.+.+++-.+.
T Consensus 284 ~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~~L~l~ 333 (396)
T COG0626 284 KVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDSLKLF 333 (396)
T ss_pred CeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHHhCCcc
Confidence 77665554411 11111111134556778887743344444443433
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-16 Score=144.92 Aligned_cols=277 Identities=18% Similarity=0.145 Sum_probs=183.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
..++++++++++|. .+++.++++|.||++++.++ +++||+ |++|.-+|.....++...|++++.+++
T Consensus 27 ~~~fE~~~a~~~g~--------~~~~~~~sgt~Al~~al~~l~~~~gde----Vi~p~~t~~~~~~ai~~~G~~pv~~Di 94 (363)
T PF01041_consen 27 VEEFEKEFAEYFGV--------KYAVAVSSGTSALHLALRALGLGPGDE----VIVPAYTFPATASAILWAGAEPVFVDI 94 (363)
T ss_dssp HHHHHHHHHHHHTS--------SEEEEESSHHHHHHHHHHHTTGGTTSE----EEEESSS-THHHHHHHHTT-EEEEE-B
T ss_pred HHHHHHHHHHHhCC--------CeEEEeCChhHHHHHHHHhcCCCcCce----EecCCCcchHHHHHHHHhccEEEEEec
Confidence 49999999999995 47888888999999999998 578998 999999999999999999999999998
Q ss_pred CccccccC---------CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-CcCCCCCCccEEEecc
Q 018172 117 DANTFDKN---------NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-TPITGAADHDIMLFTL 185 (360)
Q Consensus 117 ~~~~~~~~---------~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-~~~~~~~~~~i~~~S~ 185 (360)
|++.+..+ +++++|++.+ .-|...+ +.+.++|+++|+++|+|.+++.+.. ....-....++.++||
T Consensus 95 ~~~~~~id~~~~~~~i~~~t~ai~~~h---~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf 171 (363)
T PF01041_consen 95 DPETLNIDPEALEKAITPKTKAILVVH---LFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSF 171 (363)
T ss_dssp ETTTSSB-HHHHHHHHHTTEEEEEEE----GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEES
T ss_pred cCCcCCcCHHHHHHHhccCccEEEEec---CCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecC
Confidence 87766553 6899999655 5677766 6778888889999999999986431 1111112337778887
Q ss_pred --ccccCCCCceEEEEeecCHHHHHHHHHHHhhccc-------------cC-ChHHHHHHHHHhcccCCCchhHHHHHHH
Q 018172 186 --SKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI-------------GV-SKESQLRAAKILGIVSDDYPNFFEYGRR 249 (360)
Q Consensus 186 --sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~-------------~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (360)
+|.+. +| ..|.+++.++++.+.++.++..+.. +. ..+....|+-.+..+ +.+++..+
T Consensus 172 ~~~K~i~-~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL-----~~L~~~~~ 244 (363)
T PF01041_consen 172 HPTKIIT-TG-EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQL-----KRLDEIIA 244 (363)
T ss_dssp STTSSS--SS-S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHH-----HTHHHHHH
T ss_pred CCCCCCc-CC-CCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHH-----HHhhhhHH
Confidence 58775 44 3588999889999999887753311 11 122222333333322 55666777
Q ss_pred HHHHHHHHHHHHHHhcCCcccCC-CCCcc-cccccccCCCCCCcccccCCc-----hHHHHHHHHhhCeeeeCCCC--CC
Q 018172 250 LMSERWNMLRQVIRQSGVFGLPE-YPLEY-CNFTGKFTNSHPGFAWLESKE-----DEDCEKLLRAERIMARGGRR--FG 320 (360)
Q Consensus 250 ~~~~~~~~l~~~l~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gI~~~pg~~--f~ 320 (360)
.-+++.+++.+.|..++++.... +.+.. .++. .+.+.+++ .+.+.+.|+++||.+.+... ..
T Consensus 245 ~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~---------~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~ 315 (363)
T PF01041_consen 245 RRRENAQRYREALAGIPGIKPPPIPDGAERSSYY---------RFPIRLPDEALADRDELVEALRARGIETRPHYPKPLH 315 (363)
T ss_dssp HHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCES---------SEEEEETCCGCSTHHHHHHHHHHTTBEEBCSTSSCGG
T ss_pred HHHHHHHHHHHHHhcCCCcccccccccccccccc---------cccccccccccchHHHHHHHHHHCCCcccccccCchh
Confidence 77788888889999987664322 22211 1111 12233332 38889999999999987552 10
Q ss_pred ------C-----C----------CCeEEEEecC--ChHHHHHHHHHHH
Q 018172 321 ------A-----D----------AKYARVSMLS--REEIFNIFLERLS 345 (360)
Q Consensus 321 ------~-----~----------~~~~R~s~~~--~~e~~~~~~~~l~ 345 (360)
. . ...+.+.+.. +++++++.+++|+
T Consensus 316 ~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 316 RQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp GSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred hhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 0 0 1136666544 8899998888774
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-16 Score=145.20 Aligned_cols=279 Identities=12% Similarity=0.064 Sum_probs=193.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEc-CChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc--HHHHHHhCCeeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIG-TGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY--PAETDYLRSGLYKW 114 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t-~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~--~~~~~~~g~~~~~~ 114 (360)
.++.++.++++++. .+..+|+++ ++++.++..++..++.+|++ +++........ ..+++..|.. ..+
T Consensus 50 ~~~~~~~l~~l~~~-----~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~----~l~i~~G~fg~r~~~~a~~~g~~-~~~ 119 (360)
T PRK05355 50 AEEAEADLRELLNI-----PDNYKVLFLQGGASLQFAMVPMNLLGGGKK----ADYVDTGSWSKKAIKEAKKYGEV-NVA 119 (360)
T ss_pred HHHHHHHHHHHhCC-----CCCcEEEEEcCCchHHHHHHHHhcCCCCCe----EEEEECCHHHHHHHHHHHHhCCc-eEE
Confidence 37788888888873 122346555 78888899999999998887 55554333322 4667778865 433
Q ss_pred cCCc-c---------ccccCCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEec
Q 018172 115 DGDA-N---------TFDKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFT 184 (360)
Q Consensus 115 ~~~~-~---------~~~~~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S 184 (360)
..+. . ....++++++|.+++-.+.||+..++ +.++ +|+++++|.+.+.++.+...+..+ ++++|
T Consensus 120 ~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~~-i~~i---~g~l~vVDavss~g~~~idv~~~d--~~~~s 193 (360)
T PRK05355 120 ASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFHE-LPDT---GDVPLVADMSSDILSRPIDVSKFG--LIYAG 193 (360)
T ss_pred ecccccCCCCCCChhhccCCCCCCEEEEccCCCcceEecCc-cccc---CCCcEEEEcCccccCccCCHHHcc--EEEEe
Confidence 3221 1 11123468999999999999999852 2222 799999999998776665555443 99999
Q ss_pred cccccCCCCceEEEEeecCHHHHHHHHHH-----------H-hhccccCChHHHHHHHHHhcccCCCchh-HHHHHHHHH
Q 018172 185 LSKCTGHAGSRIGWALVKDTEVARKMTRF-----------I-ELGSIGVSKESQLRAAKILGIVSDDYPN-FFEYGRRLM 251 (360)
Q Consensus 185 ~sK~~~~~G~r~G~~~~~~~~~~~~l~~~-----------~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~ 251 (360)
..|.+|++| +|+++. ++++.+.+... . .....++|.....++.++|+.+.+ . .++++.++.
T Consensus 194 sqK~lgP~G--lg~l~~-s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~---~gG~e~i~~r~ 267 (360)
T PRK05355 194 AQKNIGPAG--LTIVIV-REDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKE---QGGVAAMEKRN 267 (360)
T ss_pred ccccccCCc--eEEEEE-CHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHH---ccCHHHHHHHH
Confidence 999999887 888888 67777665431 1 112356677788888888887653 4 589999999
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEE
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARV 328 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~ 328 (360)
++..+++++.|++++.+....+... ++ +..+.+.+++. ..+...+.++|+.+.+|.. ..+.+|+
T Consensus 268 ~~l~~~l~~~l~~~~~~~~~~~~~~---------rs-~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~---~~g~vRi 334 (360)
T PRK05355 268 QEKAALLYDAIDSSDFYRNPVAPED---------RS-RMNVPFTLADEELDKKFLAEAKAAGLVGLKGHR---SVGGMRA 334 (360)
T ss_pred HHHHHHHHHHHHhCCCcccCCChhh---------cC-CcEEEEEcCChHHHHHHHHHHHHCCCcccCCCC---ccCcEEE
Confidence 9999999999999974322111100 01 11244555554 4555677889999877653 2468999
Q ss_pred EecC--ChHHHHHHHHHHHHHHhch
Q 018172 329 SMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 329 s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
|+.. +.||+++++++|++++..+
T Consensus 335 S~~~~nt~eei~~l~~~l~~~~~~~ 359 (360)
T PRK05355 335 SIYNAMPLEGVQALVDFMKEFERRH 359 (360)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9866 8999999999999988653
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-16 Score=148.12 Aligned_cols=261 Identities=12% Similarity=0.045 Sum_probs=170.3
Q ss_pred CcEEEcCChHHHHHHHHHhhcC---------CCCCCCceEEEeCCCCCCc-HHHHHHhC------------CeeeeecC-
Q 018172 60 RHIVIGTGSTQLYQAALYALSS---------PGGPEPISVVSAAPYYSQY-PAETDYLR------------SGLYKWDG- 116 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~---------~gd~~~~~vl~~~p~~~~~-~~~~~~~g------------~~~~~~~~- 116 (360)
+.+++++++++++..++..+.. +|+. +|+..+-+|... ...+...| ..+..++.
T Consensus 95 ~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~---~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (401)
T TIGR01885 95 DKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQA---IIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYN 171 (401)
T ss_pred CEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCC---EEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCC
Confidence 4789999999999999988632 2333 377777776643 34333322 11233322
Q ss_pred Ccccccc-----CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCC--cCC---CCCCccEE
Q 018172 117 DANTFDK-----NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYT--PIT---GAADHDIM 181 (360)
Q Consensus 117 ~~~~~~~-----~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~--~~~---~~~~~~i~ 181 (360)
|.+.++. .++..+|++..+++++|.+.+ +.+.++|+++|+++|+||+|.+.... ... .....+++
T Consensus 172 d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~ 251 (401)
T TIGR01885 172 NLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIV 251 (401)
T ss_pred CHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEE
Confidence 2222221 245678888888999999886 35678999999999999998642111 110 11122333
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHH
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQV 261 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (360)
+++|.++..++++|++++ ++++++.+.......+++.+++.+.++.++|+.+.+. ..+++.+++.+++.+.
T Consensus 252 --~~gK~l~~g~~~ig~v~~-~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~------~l~~~~~~~~~~~~~~ 322 (401)
T TIGR01885 252 --LLGKALSGGVYPVSAVLA-DDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEE------KLAENAEKLGEIFRDQ 322 (401)
T ss_pred --EeeccccCCCCCcEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHH
Confidence 467999866699999998 7888888765333345677899999999988865431 3445667778888888
Q ss_pred HHhcCCccc--CCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec--CC
Q 018172 262 IRQSGVFGL--PEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMARGGRRFGADAKYARVSML--SR 333 (360)
Q Consensus 262 l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~--~~ 333 (360)
|++++.-.+ ..+.|.++ .++++.+. ...+.+.|.++||.+.|+. ++.+||+.. .+
T Consensus 323 L~~l~~~~~~~~~g~g~~~------------~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~-----~~~lRi~p~l~~t 385 (401)
T TIGR01885 323 LKKLPKPIITEVRGRGLLN------------AIVIDESKTGRTAWDLCLKLKEKGLLAKPTH-----GNIIRLAPPLVIT 385 (401)
T ss_pred HHhccCCceeEEeecCeeE------------EEEeccCcchhHHHHHHHHHHhCCEEEEecC-----CCEEEEeCCccCC
Confidence 888742111 11222221 12233321 2566777788999998742 568999974 49
Q ss_pred hHHHHHHHHHHHHHHh
Q 018172 334 EEIFNIFLERLSAIQG 349 (360)
Q Consensus 334 ~e~~~~~~~~l~~~~~ 349 (360)
++++++++++|+++++
T Consensus 386 ~~~i~~~l~~l~~~l~ 401 (401)
T TIGR01885 386 EEQLDEGLEIIKKVID 401 (401)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998763
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=132.51 Aligned_cols=151 Identities=19% Similarity=0.184 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH-HHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP-AETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~-~~~~~~g~~~~~~~~~ 117 (360)
.++++.++++++. .++++++++|+|+++..++..+.+++++ |+++.++|.+.. ..+...|++++.++.+
T Consensus 3 ~~~~~~l~~~~~~------~~~~~~~~~~~t~a~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 72 (170)
T cd01494 3 EELEEKLARLLQP------GNDKAVFVPSGTGANEAALLALLGPGDE----VIVDANGHGSRYWVAAELAGAKPVPVPVD 72 (170)
T ss_pred HHHHHHHHHHcCC------CCCcEEEeCCcHHHHHHHHHHhCCCCCE----EEEeecccceehhhHHHhcCCEEEEeccC
Confidence 7899999999952 3458999999999999999999888887 999999999998 8888899999988765
Q ss_pred cccc-----------ccCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCc---CCCCCCccEEE
Q 018172 118 ANTF-----------DKNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTP---ITGAADHDIML 182 (360)
Q Consensus 118 ~~~~-----------~~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~---~~~~~~~~i~~ 182 (360)
.+.. ..+++++++++++++||+|...+ +.+.++|+++++++|+|++|..+.... .....+.++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~ 152 (170)
T cd01494 73 DAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVT 152 (170)
T ss_pred CCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEE
Confidence 4321 11468899999999999999887 778888888999999999999654432 23345678999
Q ss_pred eccccccCCCCceEEEEee
Q 018172 183 FTLSKCTGHAGSRIGWALV 201 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~ 201 (360)
.|++|.++. .++|+++.
T Consensus 153 ~s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 153 FSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred EEcccccCC--CceEEEEe
Confidence 999999985 56999876
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-15 Score=144.18 Aligned_cols=264 Identities=13% Similarity=0.025 Sum_probs=170.9
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CCe--e-----------eeecCCc------
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RSG--L-----------YKWDGDA------ 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~--~-----------~~~~~~~------ 118 (360)
+.+++++++++++..+++.... .|.. +|+.-+.+|......+..+ +.. . ..++.+.
T Consensus 102 ~~~~f~~sGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 178 (421)
T PRK06777 102 AKTAFFTTGAEAVENAVKIARAYTGRP---GVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVS 178 (421)
T ss_pred ceEEEeCCcHHHHHHHHHHHHHhhCCC---eEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcC
Confidence 4789999999999998887642 2322 4887777777775444332 210 0 1111110
Q ss_pred -----ccccc-------CCCeeEEEEcCCCCCCccc-ch----HHHHHHhhhcCcEEEEeecccCCCCCc-C--CCCCCc
Q 018172 119 -----NTFDK-------NNGAYIEVVNSPNNPDGTI-RE----AVLAKVNRSAEGKLIHDLAYYWPQYTP-I--TGAADH 178 (360)
Q Consensus 119 -----~~~~~-------~~~~~~i~~~~p~NPtG~~-~~----~~~~~~~~~~~~~li~D~ay~~~~~~~-~--~~~~~~ 178 (360)
+.++. .++..+|++....++.|.. ++ +.+.++|+++|+++|.||+|.+..... . ....+.
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~ 258 (421)
T PRK06777 179 VEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDV 258 (421)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCC
Confidence 00110 1345566666556778865 44 466789999999999999998532111 1 111121
Q ss_pred cEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 179 DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 179 ~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
.--+.++||.++ +|+|+||+++ ++++++.+.......+++.|+++|.++.++|+.+.+ ++..++++++.+++
T Consensus 259 ~pDiv~~sK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~------~~l~~~~~~~g~~l 330 (421)
T PRK06777 259 KPDLITMAKSLG-GGMPISAVVG-RAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAE------EKLCQRALILGAHL 330 (421)
T ss_pred CCCEEeeehhhc-CCCceEEEEE-cHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHH
Confidence 111347999999 9999999999 789988887555557788999999999999986543 24555566666666
Q ss_pred HHHHHhc----CCcccCCCCCcccccccccCCCCCCcccccCC-----ch---HHHHHHHHhhCeeeeCCCCCCCCCCeE
Q 018172 259 RQVIRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-----ED---EDCEKLLRAERIMARGGRRFGADAKYA 326 (360)
Q Consensus 259 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~ 326 (360)
.+.|+++ +.+....+.|.++.+ .+..+ +. ..+...+.++||.+.|+..|+ +++
T Consensus 331 ~~~L~~l~~~~~~i~~vrg~G~~~~i------------~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g---~~l 395 (421)
T PRK06777 331 VEVLEKAKASCPAIVDIRARGSMVAV------------EFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHG---NVI 395 (421)
T ss_pred HHHHHHHHHhCCCeEEecCceEEEEE------------EEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCC---CEE
Confidence 6666554 433334455555332 11111 11 344555678999999987665 499
Q ss_pred EEEe--cCChHHHHHHHHHHHHHHh
Q 018172 327 RVSM--LSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 327 R~s~--~~~~e~~~~~~~~l~~~~~ 349 (360)
||+. ..++|++++++++|.+++.
T Consensus 396 r~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 396 RFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 9987 4599999999999999874
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-15 Score=144.79 Aligned_cols=265 Identities=12% Similarity=0.063 Sum_probs=167.8
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcH-HHHHHhCCe------------eeeecCCc-------
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYP-AETDYLRSG------------LYKWDGDA------- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~-~~~~~~g~~------------~~~~~~~~------- 118 (360)
+.+++++++++++..+++.... .|.. +|+.-...|.... ......|.. +..++.+.
T Consensus 102 ~~v~f~~sGsEAve~AlklAr~~tgr~---~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (443)
T PRK08360 102 PKVSFGLSGSDANDGAIKFARAYTKRR---KILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFG 178 (443)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhcCCC---eEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCcccccccc
Confidence 4799999999999999887642 2322 3777666666654 222222211 11111100
Q ss_pred --------c-------ccc---cCCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCc----
Q 018172 119 --------N-------TFD---KNNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTP---- 171 (360)
Q Consensus 119 --------~-------~~~---~~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~---- 171 (360)
+ .+. ..+++.+|++.--+||+|.+++ +.+.++|+++|+++|+||+|.+.....
T Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a 258 (443)
T PRK08360 179 KEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFA 258 (443)
T ss_pred CchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchh
Confidence 0 011 0246777777755699999876 356788999999999999998421111
Q ss_pred --CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHH
Q 018172 172 --ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRR 249 (360)
Q Consensus 172 --~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (360)
..+. ..++ .++||.++ +|+|+||+++ ++++++.+.......+.+.+++.+.++.++++.+.+. ...++.++
T Consensus 259 ~~~~~~-~pDi--itlsK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~--~l~~~~~~ 331 (443)
T PRK08360 259 IEHFGV-EPDI--ITLGKPLG-GGLPISATIG-RAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEK--NLLKRAEK 331 (443)
T ss_pred hhhcCC-CCCE--EEeccccc-CCceeEEEEE-cHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHc--CHHHHHHH
Confidence 1111 1233 37799999 9999999998 8899998875545567788999999999999876543 44444444
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--------ch---HHHHHHHHhhCeeeeCCCC
Q 018172 250 LMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------ED---EDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 250 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~l~~~gI~~~pg~~ 318 (360)
.-...++.+.+...+++.+.-.. +.+.++.+.+. +. ..+...+.++||.+.+..
T Consensus 332 ~g~~l~~~L~~l~~~~~~v~~vr--------------g~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~- 396 (443)
T PRK08360 332 LGNYTKKRLEEMKKKHELIGDVR--------------GIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFS- 396 (443)
T ss_pred HHHHHHHHHHHHHHhCCCeeeee--------------ccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecC-
Confidence 44444444444333443222121 22223333221 11 456677889999986521
Q ss_pred CCCCCCeEEEE--ecCChHHHHHHHHHHHHHHhchhc
Q 018172 319 FGADAKYARVS--MLSREEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 319 f~~~~~~~R~s--~~~~~e~~~~~~~~l~~~~~~~~~ 353 (360)
.+.+||+ +..++++++++++++.+++.+...
T Consensus 397 ----~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~ 429 (443)
T PRK08360 397 ----GNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEE 429 (443)
T ss_pred ----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3679995 445999999999999999987543
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-15 Score=153.69 Aligned_cols=291 Identities=12% Similarity=0.018 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChH----HHHHHHHHhhcCC-CCCCCceEEEeCCCCCCcHHHHHHhCCeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGST----QLYQAALYALSSP-GGPEPISVVSAAPYYSQYPAETDYLRSGLYK 113 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t----~~l~~~~~~l~~~-gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~ 113 (360)
.++|+.+++++|. ++|.++++++ +++.+++..+.++ ||..+..|+++...|......+...|++++.
T Consensus 571 ~~~r~~la~i~g~--------~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv~ 642 (993)
T PLN02414 571 EDLGDLLCEITGF--------DSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVV 642 (993)
T ss_pred HHHHHHHHHHhCC--------CeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEEE
Confidence 6889999999984 5899999999 8999999999866 8733344999999999999999999999999
Q ss_pred ecCCcccc-cc-------C---CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-CCcCCCCCCccE
Q 018172 114 WDGDANTF-DK-------N---NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ-YTPITGAADHDI 180 (360)
Q Consensus 114 ~~~~~~~~-~~-------~---~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~-~~~~~~~~~~~i 180 (360)
++.|.++. +. + +++++|++++|||-+|...+ +++.++++++|+++++|.++.... ....+...+.++
T Consensus 643 v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~ 722 (993)
T PLN02414 643 VGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADV 722 (993)
T ss_pred eccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCE
Confidence 99865432 11 2 47899999999999999886 777788888999999999987544 334457888999
Q ss_pred EEeccccccCC----CCceEEEEeecCHHHHHHHHHH------------Hhhcccc------CChHHHHHHHHHhcccCC
Q 018172 181 MLFTLSKCTGH----AGSRIGWALVKDTEVARKMTRF------------IELGSIG------VSKESQLRAAKILGIVSD 238 (360)
Q Consensus 181 ~~~S~sK~~~~----~G~r~G~~~~~~~~~~~~l~~~------------~~~~~~~------~~~~~~~~~~~~l~~~~~ 238 (360)
+++|.+|.|+. .|=.+|++.+ .+.+...+-.. ...+..+ .+......+...+..+ +
T Consensus 723 ~~~s~HK~f~~P~G~GGPg~G~l~~-~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~l-G 800 (993)
T PLN02414 723 CHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMM-G 800 (993)
T ss_pred EEecCCccCCcCcccCCCCeeeEEE-chhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHH-C
Confidence 99999997652 2234888887 66666655311 1000011 1113333444444433 3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCc-ccccccccCCCCCCcccccCC-----chHHHHHHHHhhCee
Q 018172 239 DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLE-YCNFTGKFTNSHPGFAWLESK-----EDEDCEKLLRAERIM 312 (360)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gI~ 312 (360)
. +.+.+..+....+..++.+.|.+.-.+.+..+.+. +..|. .-+..++ +..++.+.|.++||.
T Consensus 801 ~--~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv---------~~~~~l~~~~g~~~~di~krL~d~Gih 869 (993)
T PLN02414 801 S--EGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFI---------IDLRPFKNTAGIEPEDVAKRLMDYGFH 869 (993)
T ss_pred H--hHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEE---------EeccccccccCCCHHHHHHHHHHcCcE
Confidence 2 67778888889999999999977544444333321 11111 0011222 126677777799997
Q ss_pred eeCCCCCCCCCCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 313 ARGGRRFGADAKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 313 ~~pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
..- ..|. ..+++|++.+- +++|+|++++++..+..+..
T Consensus 870 apt-~~~p-v~~~lmiepTE~~skeelDrf~~al~~i~~e~~ 909 (993)
T PLN02414 870 APT-MSWP-VPGTLMIEPTESESKAELDRFCDALISIREEIA 909 (993)
T ss_pred Eee-eccc-cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 543 3353 47799999855 89999999999999887654
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-15 Score=140.08 Aligned_cols=265 Identities=12% Similarity=0.027 Sum_probs=170.9
Q ss_pred cEEEcCChHHHHHHHHHhhcCC-------------------------------CCCCCceEEEeCCCCCCcHHH-----H
Q 018172 61 HIVIGTGSTQLYQAALYALSSP-------------------------------GGPEPISVVSAAPYYSQYPAE-----T 104 (360)
Q Consensus 61 ~i~~t~G~t~~l~~~~~~l~~~-------------------------------gd~~~~~vl~~~p~~~~~~~~-----~ 104 (360)
+|=.-+ +++++..++.+|++| ||+ |+..++........ +
T Consensus 114 nvqp~S-g~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~----i~~l~l~~GGHlthg~~~n~ 188 (493)
T PRK13580 114 YVQPHS-GADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQR----LLGMSLDSGGHLTHGFRPNI 188 (493)
T ss_pred cccCCC-cHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCE----EEeecCCCCCeeecCcccch
Confidence 344444 578888899999876 676 88776665444221 1
Q ss_pred HHhCCeeeeecCCccc--ccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCC-
Q 018172 105 DYLRSGLYKWDGDANT--FDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPIT- 173 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~~--~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~- 173 (360)
.....+++..+++.+. ++. .++++.|+++..+|-.+ ..+ +.+.++|+++|+++++|++|..+.+....
T Consensus 189 ~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~~~-~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~ 267 (493)
T PRK13580 189 SGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPR-RVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVF 267 (493)
T ss_pred hhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCccccCC-CcCHHHHHHHHHHcCCEEEEECchhhceeccccc
Confidence 1112444555554321 221 35778888888888755 445 78889999999999999999965432111
Q ss_pred -----CCCCccEEEecccccc-CCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 174 -----GAADHDIMLFTLSKCT-GHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 174 -----~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
...+.+++++|++|++ |+. .|++++ ++++++.+.+...+...+..++...+++.++..+.. ....+.
T Consensus 268 ~~~~~~~~~~D~vtgT~hKaL~GP~---GG~I~~-~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~~---~ef~~y 340 (493)
T PRK13580 268 TGDEDPVPHADIVTTTTHKTLRGPR---GGLVLA-KKEYADAVDKGCPLVLGGPLPHVMAAKAVALAEART---PEFQKY 340 (493)
T ss_pred hhhcCCCCCCcEEEeCChhhccCCC---eEEEEe-cHHHHHHHhhCCCcccCCCccHHHHHHHHHHHHHhC---ccHHHH
Confidence 1235789999999988 533 499988 788888885444322233333333333334443322 223567
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeCCCCCCC--
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARGGRRFGA-- 321 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~pg~~f~~-- 321 (360)
++++.++.+.+.+.|.+.+. .+... + ...-.+++.+.+. ..+.+.|.+.||.+.+-.....
T Consensus 341 ~~~l~~Na~~La~~L~~~G~-~vv~g-g-----------TdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~ 407 (493)
T PRK13580 341 AQQVVDNARALAEGFLKRGA-RLVTG-G-----------TDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPN 407 (493)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CccCC-C-----------CCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCC
Confidence 88999999999999998853 33211 0 1112567777653 4677799999999875332221
Q ss_pred ---CCCeEEEEecC------ChHHHHHHHHHHHHHHhch
Q 018172 322 ---DAKYARVSMLS------REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 322 ---~~~~~R~s~~~------~~e~~~~~~~~l~~~~~~~ 351 (360)
.+..+||++.. ++++++++++.|.+++...
T Consensus 408 g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 408 GAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred CCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 15579999754 5899999999999998753
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-15 Score=133.96 Aligned_cols=216 Identities=17% Similarity=0.122 Sum_probs=161.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~ 113 (360)
...|++.++...+. + ++++.+++..++..++..|+..|++ ++.....|.....+++. +|++...
T Consensus 79 ~~~le~~iaal~ga-------~-~~l~fsSGmaA~~~al~~L~~~g~~----iV~~~~~Y~gT~~~l~~~~~~~gie~~~ 146 (409)
T KOG0053|consen 79 RDVLESGIAALEGA-------A-HALLFSSGMAAITVALLHLLPAGDH----IVATGDVYGGTLRILRKFLPKFGGEGDF 146 (409)
T ss_pred hHHHHHHHHHHhCC-------c-eEEEecccHHHHHHHHHHhcCCCCc----EEEeCCCcccHHHHHHHHHHHhCceeee
Confidence 37888888888884 3 5777777788889999999999999 99999999999888665 4778777
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++++ .+.+.. ++++++|++.+|.||+..+.+ +.+.++|+++|+++|+|+.++.+ +...+-..+.+|++.|.+|.+
T Consensus 147 vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p-~~~~pL~lGADIV~hSaTKyi 225 (409)
T KOG0053|consen 147 VDVDDLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP-YNQDPLPLGADIVVHSATKYI 225 (409)
T ss_pred echhhHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc-cccChhhcCCCEEEEeeeeee
Confidence 7654 334433 568999999999999999999 78889999999999999998854 333334677899999999988
Q ss_pred C-CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 G-HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~-~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+ ...+=.|.++...+++.+.+...+...+.+.++........-++.+ .-..++-.++...+.+.|.+.+.+
T Consensus 226 ~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglktl--------~lRi~~~~ena~~~A~~Le~~~~v 297 (409)
T KOG0053|consen 226 GGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLKTL--------HLRINKHSENALKIALLLEAHPKV 297 (409)
T ss_pred cCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcchh--------hhhHHHHHHHHHHHHHHhhhCCce
Confidence 5 3445556676645999999999998888889888887776655421 112222233334455666666655
Q ss_pred ccCCCC
Q 018172 269 GLPEYP 274 (360)
Q Consensus 269 ~~~~~~ 274 (360)
....++
T Consensus 298 ~kv~YP 303 (409)
T KOG0053|consen 298 KKVYYP 303 (409)
T ss_pred eEEEcC
Confidence 543333
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.7e-16 Score=146.66 Aligned_cols=277 Identities=12% Similarity=0.042 Sum_probs=174.3
Q ss_pred CcEEEcCChHHHHHHHHHhhcCC--CCCCCceEEEeCCCCCCcHHHHHHh-C------------Ce-------eeeec-C
Q 018172 60 RHIVIGTGSTQLYQAALYALSSP--GGPEPISVVSAAPYYSQYPAETDYL-R------------SG-------LYKWD-G 116 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~~--gd~~~~~vl~~~p~~~~~~~~~~~~-g------------~~-------~~~~~-~ 116 (360)
+.+++++|+++++..+++..... ++. |+..+++|..+...+... | .. ...++ .
T Consensus 107 ~~v~~~~sGseA~e~Aik~a~~~~g~~~----ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (426)
T PRK00062 107 EMVRMVNSGTEATMSAIRLARGYTGRDK----IIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYN 182 (426)
T ss_pred CEEEEecCHHHHHHHHHHHHHHHhCCCe----EEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCC
Confidence 47999999999999999886432 333 999999999986433221 1 00 01111 1
Q ss_pred Ccccccc-----CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCcC--CCCCCccEEEec
Q 018172 117 DANTFDK-----NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTPI--TGAADHDIMLFT 184 (360)
Q Consensus 117 ~~~~~~~-----~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~~--~~~~~~~i~~~S 184 (360)
|.+.++. ..++.+|++......+|.+.+ +.+.++|+++|+++|+||+|.+...... ....+..--+.+
T Consensus 183 d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi~~ 262 (426)
T PRK00062 183 DLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDLTT 262 (426)
T ss_pred CHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcchHh
Confidence 1222211 235667777633344888865 4677899999999999999984321111 111111111468
Q ss_pred cccccCCCCceEEEEeecCHHHHHHHHHH---HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHH
Q 018172 185 LSKCTGHAGSRIGWALVKDTEVARKMTRF---IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQV 261 (360)
Q Consensus 185 ~sK~~~~~G~r~G~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (360)
++|.++ .|+++|++++ ++++++.+... ....+++.+++.+.++.+.|+.+.+. +..++.++.....++.+.+.
T Consensus 263 ~gK~l~-~G~p~ga~~~-~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~--~~~~~~~~~~~~~~~~l~~~ 338 (426)
T PRK00062 263 LGKIIG-GGLPVGAFGG-RREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEP--GFYEELEALTKRLAEGLKEA 338 (426)
T ss_pred hhhHhh-CCCcceeeeE-HHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHH
Confidence 999999 8999999988 78998888532 23345688999999999999877654 56777777777777777766
Q ss_pred HHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHH
Q 018172 262 IRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFN 338 (360)
Q Consensus 262 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~ 338 (360)
.++++.+.-....|.++.+.-.. .....+.-...++. ..+...|.++||.+.|.. .+.+++++..++++++
T Consensus 339 ~~~~~~~~~vrg~G~~~~i~l~~-~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~-----~~~~~~~~~~t~~ei~ 412 (426)
T PRK00062 339 AKKAGIPLTVNRVGSMFGLFFTD-EPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQ-----FEAGFVSAAHTDEDIE 412 (426)
T ss_pred HHHcCCceEEEEecceEEEEEec-CCCcchhhhccccHHHHHHHHHHHHHCCeEeecCC-----cCceeeeccCCHHHHH
Confidence 66665332223344443221000 00000000001121 467777888999998732 2356788767999999
Q ss_pred HHHHHHHHHHhc
Q 018172 339 IFLERLSAIQGG 350 (360)
Q Consensus 339 ~~~~~l~~~~~~ 350 (360)
++++++.+++.+
T Consensus 413 ~~~~~l~~~l~~ 424 (426)
T PRK00062 413 KTLEAARKAFAA 424 (426)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-15 Score=137.83 Aligned_cols=269 Identities=11% Similarity=0.031 Sum_probs=183.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCCc--EEEcCChHHHHHHHHHhh--cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeec
Q 018172 40 ELAEAINNLHHVVDNAVSDGRH--IVIGTGSTQLYQAALYAL--SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWD 115 (360)
Q Consensus 40 ~lr~~la~~~~~~~~~~~~~~~--i~~t~G~t~~l~~~~~~l--~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~ 115 (360)
+.++.++++++. ++++ .++|+|+|+++...+... ..++++ |++++-.|.+...+++.+|.+...++
T Consensus 69 ~~~~~~a~l~g~------~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~----ii~s~~~H~Sv~ka~~~lg~~~~~V~ 138 (380)
T PRK02769 69 DVMNFFAELFKI------PFNESWGYITNGGTEGNLYGCYLARELFPDGT----LYYSKDTHYSVSKIARLLRIKSRVIT 138 (380)
T ss_pred HHHHHHHHHhCC------CCCCCCEEEecChHHHHHHHHHHHHHhCCCcE----EEeCCCceehHHHHHHHcCCCCceec
Confidence 555556666765 3234 488999999976655443 245666 99999999999999999999888887
Q ss_pred CCccc-ccc-------CC---CeeEEEEcCCCCCCcccch-HHHHHHhhhcC---cEEEEeecccCCCCC------cCCC
Q 018172 116 GDANT-FDK-------NN---GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAE---GKLIHDLAYYWPQYT------PITG 174 (360)
Q Consensus 116 ~~~~~-~~~-------~~---~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~---~~li~D~ay~~~~~~------~~~~ 174 (360)
.+.++ ++. ++ +|.+|+++..+|+||.+.| +++.++|+++| +++++|.+|+.+..+ ++..
T Consensus 139 ~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~ 218 (380)
T PRK02769 139 SLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSF 218 (380)
T ss_pred cCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCc
Confidence 65433 221 22 4889999999999999998 77888888887 699999999864433 2222
Q ss_pred CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHh-------hccccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 175 AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIE-------LGSIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 175 ~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
..+.+.+..|.+|.++ ....+|.++. .++..+.+..... ....+.+.....++.++++.+.. ..+++.
T Consensus 219 ~~~vDsis~s~HK~~~-~P~g~G~l~~-r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~---~G~~~~ 293 (380)
T PRK02769 219 ADGIDSIAISGHKFIG-SPMPCGIVLA-KKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGS---KGLRQR 293 (380)
T ss_pred cCCCCEEEECCcccCC-CCCCcEEEEE-ehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCH---HHHHHH
Confidence 2367889999999877 3345888888 4555554421111 11223455666677777775532 678888
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEE
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYAR 327 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R 327 (360)
.+...+..+++.+.|++.+...+..|. .+.+.++.++. .+ . +|-.+.+ .++++|
T Consensus 294 ~~~~~~la~~l~~~L~~~g~~~~~~p~--------------~~~v~f~~~~~-~~---~--~~w~l~~------~~~~~h 347 (380)
T PRK02769 294 VQHCLDMAQYAVDRLQANGIPAWRNPN--------------SITVVFPCPSE-RI---W--KKWHLAT------SGNQAH 347 (380)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEcCCC--------------ceEEEEcCCCH-HH---H--hCeeEcc------cCCEEE
Confidence 899999999999999887433333333 22344444442 21 1 3433332 245899
Q ss_pred EEecC--ChHHHHHHHHHHHHHHh
Q 018172 328 VSMLS--REEIFNIFLERLSAIQG 349 (360)
Q Consensus 328 ~s~~~--~~e~~~~~~~~l~~~~~ 349 (360)
+.+.. +.|.++++++.|.+...
T Consensus 348 i~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 348 IITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHh
Confidence 98866 88899999999988776
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-14 Score=132.09 Aligned_cols=288 Identities=15% Similarity=0.089 Sum_probs=210.5
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc--HHHHHHhCCeeeeec
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY--PAETDYLRSGLYKWD 115 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~--~~~~~~~g~~~~~~~ 115 (360)
..++.+.+...++.. ..+-+++++++|.++...+..+++|||+ |++........ ..+++.+|++++.+.
T Consensus 40 ~~~~~~~L~~v~~t~-----~~~~~ll~gsGt~amEAav~sl~~pgdk----VLv~~nG~FG~R~~~ia~~~g~~v~~~~ 110 (383)
T COG0075 40 MKEVLEKLRKVFGTE-----NGDVVLLSGSGTLAMEAAVASLVEPGDK----VLVVVNGKFGERFAEIAERYGAEVVVLE 110 (383)
T ss_pred HHHHHHHHHHHhcCC-----CCcEEEEcCCcHHHHHHHHHhccCCCCe----EEEEeCChHHHHHHHHHHHhCCceEEEe
Confidence 366666666666641 1256778899999999999999999998 88777665544 588999999998776
Q ss_pred CCc------c----ccccCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEec
Q 018172 116 GDA------N----TFDKNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFT 184 (360)
Q Consensus 116 ~~~------~----~~~~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S 184 (360)
.+. + .++.+++.++|.+.+---+||+..+ +++.++++++|.++|+|.+-+.+..+...+.++-++++.+
T Consensus 111 ~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itg 190 (383)
T COG0075 111 VEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITG 190 (383)
T ss_pred CCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEec
Confidence 442 2 2333577888888877668999988 7888888999999999999887777777789999999999
Q ss_pred cccccCC-CCceEEEEeecCHHHHHHHHHHH------------------hhccccCChHHHHHHHHHhcccCCCchhHHH
Q 018172 185 LSKCTGH-AGSRIGWALVKDTEVARKMTRFI------------------ELGSIGVSKESQLRAAKILGIVSDDYPNFFE 245 (360)
Q Consensus 185 ~sK~~~~-~G~r~G~~~~~~~~~~~~l~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (360)
..|.++. || +|++.. +++..+.+.... ..+.++++....+++.++|+.+.. +-++
T Consensus 191 SQK~l~~PPG--la~v~~-S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~---EGle 264 (383)
T COG0075 191 SQKALGAPPG--LAFVAV-SERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILE---EGLE 264 (383)
T ss_pred CchhccCCCc--cceeEE-CHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHH---hhHH
Confidence 9999974 66 777777 666655553221 234456777777788888887654 5699
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeCCCCCCC
Q 018172 246 YGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARGGRRFGA 321 (360)
Q Consensus 246 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~pg~~f~~ 321 (360)
...++.+++.+.+++.+..++.-.+. .....+. . ...+..|.+ +....+++++|+.+.+|..--
T Consensus 265 ~r~~RH~~~~~a~r~~~~alGl~~~~--~~~~~s~------t---vta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~l- 332 (383)
T COG0075 265 ARIARHRRLAEALRAGLEALGLELFA--DPERRSP------T---VTAIKVPEGVDDKKVRRALLKEYGVEIAGGQGPL- 332 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccc--CcccCCC------c---eEEEECCCCCCcHHHHHHHHHhCCEEeccccccc-
Confidence 99999999999999999999644443 2111110 1 122333332 344467777799988875332
Q ss_pred CCCeEEEEe-cC-ChHHHHHHHHHHHHHHhchh
Q 018172 322 DAKYARVSM-LS-REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 322 ~~~~~R~s~-~~-~~e~~~~~~~~l~~~~~~~~ 352 (360)
....+||+- +. +.+++..++.+|..++.+..
T Consensus 333 ~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g 365 (383)
T COG0075 333 KGKIFRIGHMGNVRPEDVLAALAALEAALRELG 365 (383)
T ss_pred CccEEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence 356999974 33 89999999999999998754
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.8e-15 Score=138.61 Aligned_cols=283 Identities=12% Similarity=0.071 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChH-HHHHHHHHhhcC---CCCCCCceEEEeCCCCCCcHHHHHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGST-QLYQAALYALSS---PGGPEPISVVSAAPYYSQYPAETDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t-~~l~~~~~~l~~---~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~ 114 (360)
.++++.+++++|.+ +....++++|+| .++.+++.++-. +|+. |+++.-+|.+...++...|++++.+
T Consensus 108 ~~~e~~~~~~~G~~-----~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~----VI~p~~th~S~~kAi~~~G~~pv~V 178 (444)
T TIGR03531 108 NKLVKDFLKLLGLR-----SIKSAFVVPLATGMSLSLCLSALRHKRPKAKY----VIWPRIDQKSCIKAISTAGFEPRVI 178 (444)
T ss_pred HHHHHHHHHHcCCC-----CCCEEEEECCHHHHHHHHHHHHcCCcCCCCCE----EEEECcChHHHHHHHHHcCCeEEEe
Confidence 55666666677751 123578888888 577777777652 4676 9999999999999999999999988
Q ss_pred cC--Ccccccc---------CC---CeeEEEEcCCC-CCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC--cC--CC
Q 018172 115 DG--DANTFDK---------NN---GAYIEVVNSPN-NPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT--PI--TG 174 (360)
Q Consensus 115 ~~--~~~~~~~---------~~---~~~~i~~~~p~-NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~--~~--~~ 174 (360)
+. +.+.+.. ++ +++++++++|+ +++|..-+ +.+.++|+++|+++|+|+||+..... .. .+
T Consensus 179 d~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g 258 (444)
T TIGR03531 179 ETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKA 258 (444)
T ss_pred eeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhcc
Confidence 83 4444433 12 56777777775 34455544 67888999999999999999853211 11 11
Q ss_pred -CCC-ccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHH
Q 018172 175 -AAD-HDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMS 252 (360)
Q Consensus 175 -~~~-~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 252 (360)
..+ .+++++|++|.+.+||+ .|.++++++++++.+..... ....+.+.|.+...++.. .. +.++++.++..
T Consensus 259 ~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~--g~~~~s~~~~~~~~ll~~--G~--~g~~~li~~~~ 331 (444)
T TIGR03531 259 IKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYP--GRASASPSLDVLITLLSL--GS--KGYLELLKERK 331 (444)
T ss_pred ccccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhcc--CCCCChHHHHHHHHHHHh--CH--HHHHHHHHHHH
Confidence 122 37889999999998776 34454668899988876532 233455777777776652 32 78888899999
Q ss_pred HHHHHHHHHHHhcC---CcccCCCCCcccccccccCCCCCCccccc---CCchHHHHHHHHhhCee----eeCCC-----
Q 018172 253 ERWNMLRQVIRQSG---VFGLPEYPLEYCNFTGKFTNSHPGFAWLE---SKEDEDCEKLLRAERIM----ARGGR----- 317 (360)
Q Consensus 253 ~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gI~----~~pg~----- 317 (360)
++++++.+.|+++. +..+...+.-..++ =+.++ -++...+-..|-.++|. +.||.
T Consensus 332 ~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~----------~~~~~~~~~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~ 401 (444)
T TIGR03531 332 EMYKYLKELLQKLAERHGERLLDTPENPISS----------AMTLSTLKGKDPTMLGSMLYSRRVTGPRVVTNGDSKTVG 401 (444)
T ss_pred HHHHHHHHHHHHHHHhhCcEeecCCCCceeE----------EEecccccccCHHHHHHHHHhCCCCCceeecCCCceEEC
Confidence 99999999888762 22222111100000 01111 11225666666666662 44555
Q ss_pred --CC---CC-----CCCeEEEE--ecCChHHHHHHHHHHHHH
Q 018172 318 --RF---GA-----DAKYARVS--MLSREEIFNIFLERLSAI 347 (360)
Q Consensus 318 --~f---~~-----~~~~~R~s--~~~~~e~~~~~~~~l~~~ 347 (360)
.| |. ...|+-+. ++.+.+|++.++++|.+.
T Consensus 402 ~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 402 GCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred CEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 33 21 12255553 334899999999999875
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-15 Score=140.22 Aligned_cols=287 Identities=13% Similarity=0.076 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHhhcCCCCCC-C-CcEE--EcCChHHHHHHHHHhhcC--------CCC-CCCceEEEeCCCCCCcHHHHH
Q 018172 39 PELAEAINNLHHVVDNAVSD-G-RHIV--IGTGSTQLYQAALYALSS--------PGG-PEPISVVSAAPYYSQYPAETD 105 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~-~-~~i~--~t~G~t~~l~~~~~~l~~--------~gd-~~~~~vl~~~p~~~~~~~~~~ 105 (360)
++.++.++++++. + + +++. +|+|+|+++++++..... .|. ..+.+|++++-.|.++...++
T Consensus 83 ~~~~~~la~llg~------~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~ 156 (431)
T TIGR01788 83 NRCVNMLADLWHA------PAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFAR 156 (431)
T ss_pred HHHHHHHHHHhCC------CCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHH
Confidence 4455556666664 3 1 2454 489999999988765531 110 011359999999999999999
Q ss_pred HhCCeeeeecCCccc--ccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhc------CcEEEEeecccCCC-
Q 018172 106 YLRSGLYKWDGDANT--FDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSA------EGKLIHDLAYYWPQ- 168 (360)
Q Consensus 106 ~~g~~~~~~~~~~~~--~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~------~~~li~D~ay~~~~- 168 (360)
.+|++++.++.|.++ ++. ++++.+|+++..||.||.+.| +++.++|+++ ++++++|.+|+.+.
T Consensus 157 ~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~ 236 (431)
T TIGR01788 157 YFDVELREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIA 236 (431)
T ss_pred HcCceeEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHH
Confidence 999999999988643 222 467899999999999999999 7888888888 89999999999422
Q ss_pred ------CCcCCCCCCccEEEecccccc-CCCCceEEEEeecCHH-HHHHHHHHHhhc-------cccCChHH--HHHHHH
Q 018172 169 ------YTPITGAADHDIMLFTLSKCT-GHAGSRIGWALVKDTE-VARKMTRFIELG-------SIGVSKES--QLRAAK 231 (360)
Q Consensus 169 ------~~~~~~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~~-~~~~l~~~~~~~-------~~~~~~~~--~~~~~~ 231 (360)
..........+.+..|.+|.+ ++.| +|+++.++.+ +.+.+.....+. +...+... ......
T Consensus 237 p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g--~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~ 314 (431)
T TIGR01788 237 PFVYPDLEWDFRLPRVKSINVSGHKYGLVYPG--VGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYY 314 (431)
T ss_pred HHhCCCchhhcCCCCceEEEECchhccCCCCC--cEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHH
Confidence 222223445567899999965 6565 8888775553 223321110000 11112221 112222
Q ss_pred HhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC--CCcccccccccCCCCCCcccccCCc-------hHHH
Q 018172 232 ILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEY--PLEYCNFTGKFTNSHPGFAWLESKE-------DEDC 302 (360)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 302 (360)
.+..+ + ..-+++..++..++.+++.+.|++.+++++..+ ..+ .+.++.++ ..++
T Consensus 315 ~l~~l-G--~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~--------------iV~Fr~~~~~~~~~~~~~l 377 (431)
T TIGR01788 315 NFLRL-G--REGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIP--------------LVAFKLKDDADPGYTLYDL 377 (431)
T ss_pred HHHHh-c--HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCce--------------EEEEEeCCCCCCCcCHHHH
Confidence 33322 1 267788888899999999999999987777654 222 23333321 2678
Q ss_pred HHHHHhhCeeeeCCCCC-CC-CCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 303 EKLLRAERIMARGGRRF-GA-DAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 303 ~~~l~~~gI~~~pg~~f-~~-~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
.+.|.++|+.+..-... .. +.-++|+++.. +.+.++.+++.|.+++..
T Consensus 378 ~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (431)
T TIGR01788 378 SHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAY 429 (431)
T ss_pred HHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 88999999865321111 01 23468999853 788999999999988764
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-15 Score=125.03 Aligned_cols=279 Identities=13% Similarity=0.082 Sum_probs=195.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
+..+.+.+++|+|. |.+=+|+|+.++=+.++.+++++||. |++...+|-..+.+++..|+++..+|..
T Consensus 63 I~~F~~dlaeFlg~--------D~~R~t~GARe~KfavMhal~~~gd~----vV~D~~aHYttyvAAEragl~v~eVp~t 130 (382)
T COG1103 63 IKDFLEDLAEFLGM--------DEVRVTAGAREAKFAVMHALCKEGDW----VVVDSLAHYTTYVAAERAGLNVAEVPNT 130 (382)
T ss_pred HHHHHHHHHHHhCC--------ceeeecccchhhHHHHHHHhccCCCE----EEEcCcchHHHHHHHHhcCCeEEecCCC
Confidence 47788889999996 57899999999999999999999998 8888899888899999999999988732
Q ss_pred --------cccccc------C---CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCcc
Q 018172 118 --------ANTFDK------N---NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHD 179 (360)
Q Consensus 118 --------~~~~~~------~---~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~ 179 (360)
++++.. + ..+.+.++++|...-|...+ +.+..+|+++++.++...||.-+..+.-....+.+
T Consensus 131 g~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~D 210 (382)
T COG1103 131 GYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGAD 210 (382)
T ss_pred CCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCC
Confidence 233321 1 24677889999888888888 67889999999999999999876655555678899
Q ss_pred EEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh---------ccccCChHHHHHHHHHhcccCCCchhHHHHHHHH
Q 018172 180 IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL---------GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRL 250 (360)
Q Consensus 180 i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (360)
++++|-+|+++ +.-.+|.+.. .++..+.+.+...- .+.+.-......+.+.+-...+ . -+..+.
T Consensus 211 FiVgSGHKsmA-As~PiGvl~~-~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~e----R-VkrWde 283 (382)
T COG1103 211 FIVGSGHKSMA-ASAPIGVLAM-SEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVE----R-VKRWDE 283 (382)
T ss_pred EEEecCccchh-ccCCeeEEee-hhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHH----H-HHHHHH
Confidence 99999999998 5558998877 78888887554311 0111111222222222221111 1 111122
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC----------ch-HHHHHHHHhhCee-eeCCCC
Q 018172 251 MSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK----------ED-EDCEKLLRAERIM-ARGGRR 318 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~l~~~gI~-~~pg~~ 318 (360)
--++..++.+.|.+++++.......... . .+.+..| .. -++++-|+++||. ++||.
T Consensus 284 Ev~kaR~fv~elEkigg~~qlG~rPk~H----------d-Lm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI~~G~- 351 (382)
T COG1103 284 EVEKARWFVAELEKIGGVKQLGERPKNH----------D-LMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGIQPGQ- 351 (382)
T ss_pred HHHHHHHHHHHHHHhhhHHHhCCCCccc----------c-eeeecCchHHHHHHhCcCCceeeHHHHHhcCccccccCc-
Confidence 2334456777777777555533222110 0 1222222 11 5678899999986 55543
Q ss_pred CCCCCCeEEEEecC-ChHHHHHHHHHHHHHHhch
Q 018172 319 FGADAKYARVSMLS-REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 319 f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~ 351 (360)
..++.+|+.. +.|+++..++++++++++.
T Consensus 352 ----Tk~~K~svyGl~~Eqve~V~~afkeI~eky 381 (382)
T COG1103 352 ----TKYFKLSVYGLSWEQVEYVVDAFKEIAEKY 381 (382)
T ss_pred ----eeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 6689999866 9999999999999998764
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-14 Score=138.58 Aligned_cols=264 Identities=12% Similarity=0.031 Sum_probs=167.7
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CC-------------eeeeecCCc--cc--
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RS-------------GLYKWDGDA--NT-- 120 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~--~~-- 120 (360)
+.+++++++++++..+++.... .|.. +|+.-..+|.........+ |. .+..++.+. ++
T Consensus 102 ~~v~f~~SGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 178 (425)
T PRK07495 102 KKTIFVTTGAEAVENAVKIARAATGRS---AVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVS 178 (425)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCC---eEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccccccc
Confidence 4799999999999998887642 2322 4887777777664332221 11 112222211 10
Q ss_pred -----------cc---cCCCeeEEEEcC-CCCCCccc-ch----HHHHHHhhhcCcEEEEeecccCCCCCc-C--CCCCC
Q 018172 121 -----------FD---KNNGAYIEVVNS-PNNPDGTI-RE----AVLAKVNRSAEGKLIHDLAYYWPQYTP-I--TGAAD 177 (360)
Q Consensus 121 -----------~~---~~~~~~~i~~~~-p~NPtG~~-~~----~~~~~~~~~~~~~li~D~ay~~~~~~~-~--~~~~~ 177 (360)
+. ...+..+|++.- .+| +|.. ++ +.+.++|+++|+++|+||+|.+..... . ....+
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~g 257 (425)
T PRK07495 179 VEQSLAALDKLFKADVDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHE 257 (425)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccC
Confidence 11 113455666543 344 8855 44 467789999999999999998432211 1 12334
Q ss_pred ccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH
Q 018172 178 HDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNM 257 (360)
Q Consensus 178 ~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (360)
.+..+.+++|.++ .|+++|++++ +.++++.+.......+++.|++++.++.+.++.+.+. . ..+.++++.++
T Consensus 258 v~pDi~tlsK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~--~----l~~~~~~~g~~ 329 (425)
T PRK07495 258 VAADLTTMAKGLA-GGFPLAAVTG-RAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEE--D----LCERANQLGNR 329 (425)
T ss_pred CCCCEEeehhhhc-CCccceEEEE-cHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhc--h----HHHHHHHHHHH
Confidence 5566899999999 8999999999 8899888765445567889999999888888866443 2 23333333334
Q ss_pred HHHHHHh----cCCcccCCCCCcccccccccCCCCCCcccccCCc-------h---HHHHHHHHhhCeeeeCCCCCCCCC
Q 018172 258 LRQVIRQ----SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-------D---EDCEKLLRAERIMARGGRRFGADA 323 (360)
Q Consensus 258 l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~l~~~gI~~~pg~~f~~~~ 323 (360)
+.+.|++ ++.+. .+.+.+.++|+.+.+ . ..+...+.++|+.+.+.. ...
T Consensus 330 l~~~L~~l~~~~~~i~--------------~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g---~~~ 392 (425)
T PRK07495 330 LKQRLASLRETVPEIA--------------DIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCG---VHG 392 (425)
T ss_pred HHHHHHHHHhhCCCee--------------eeecCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecC---CCC
Confidence 4444433 32111 122345567776632 1 456777788999987632 123
Q ss_pred CeEEEEe--cCChHHHHHHHHHHHHHHhchh
Q 018172 324 KYARVSM--LSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 324 ~~~R~s~--~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
+.+||.. ..+++++++++++|.+.+.+.+
T Consensus 393 ~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 393 NVIRFLAPITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred CEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 6899974 3499999999999999997643
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-14 Score=139.32 Aligned_cols=268 Identities=10% Similarity=-0.020 Sum_probs=164.8
Q ss_pred CCcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHH-HhCC--------e-----eeeecCC------
Q 018172 59 GRHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETD-YLRS--------G-----LYKWDGD------ 117 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~-~~g~--------~-----~~~~~~~------ 117 (360)
.+.+++++++++++..+++.... .|.. +|+.-+-+|........ ..+- . +..++..
T Consensus 103 ~~~v~f~~SGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (433)
T PRK08117 103 LDCFFFSNSGAEAIEGALKLAKHVTKRP---YIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCP 179 (433)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhcCCC---eEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCcccccc
Confidence 35799999999999999886431 2322 37777776666543322 2110 0 1111111
Q ss_pred ------------ccccc-------cCCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCC--c
Q 018172 118 ------------ANTFD-------KNNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYT--P 171 (360)
Q Consensus 118 ------------~~~~~-------~~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~--~ 171 (360)
.+.++ ...+..+|++.......|.+.+ +.+.++|++||+++|+||+|.+.... .
T Consensus 180 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~ 259 (433)
T PRK08117 180 KGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEW 259 (433)
T ss_pred ccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccc
Confidence 00111 0134555666555566787755 46678999999999999999852111 1
Q ss_pred CC-CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHH
Q 018172 172 IT-GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRL 250 (360)
Q Consensus 172 ~~-~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (360)
.. ...+...-+.+++|.++ .|+++|++++ ++++++.+.......+++.|++++.++.+.++.+... . ..+.
T Consensus 260 ~~~~~~gv~pDi~t~sK~lg-~G~pigav~~-~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~--~----l~~~ 331 (433)
T PRK08117 260 FAAQTFGVVPDIMTIAKGIA-SGLPLSAVVA-SKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEE--K----LLDN 331 (433)
T ss_pred hhHhhcCCCCCEeehhhhcc-CCCcceeEEE-cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhc--c----HHHH
Confidence 11 22232233579999999 8999999998 8888888765444456788999999999999865432 2 3334
Q ss_pred HHHHHHHHHHHHHhcCC-cccCCCCCcccccccccCCCCCCcccccCC------ch---HHHHHHHHhhCeeeeCCCCCC
Q 018172 251 MSERWNMLRQVIRQSGV-FGLPEYPLEYCNFTGKFTNSHPGFAWLESK------ED---EDCEKLLRAERIMARGGRRFG 320 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~l~~~gI~~~pg~~f~ 320 (360)
++++.+++.+.|+++.. ..... .+++.+.++++.+. +. ..+.+.+.++||.+.+. +
T Consensus 332 ~~~~g~~l~~~L~~l~~~~~~~~-----------~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---g 397 (433)
T PRK08117 332 ANEMGAYALERLEVLKEKHPVIG-----------DVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLC---G 397 (433)
T ss_pred HHHHHHHHHHHHHHHHhcCCcee-----------eeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeec---C
Confidence 44444555555544310 00000 11233334444441 21 55677788899998763 2
Q ss_pred CCCCeEEEEe--cCChHHHHHHHHHHHHHHhch
Q 018172 321 ADAKYARVSM--LSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 321 ~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~~ 351 (360)
...+++||++ ..+++++++++++|.+++.+.
T Consensus 398 ~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~ 430 (433)
T PRK08117 398 NAGNVLRMIPPLTVTKEEIDEGLDILDEALTEY 430 (433)
T ss_pred CCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 2356899995 449999999999999998654
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7e-15 Score=145.83 Aligned_cols=226 Identities=11% Similarity=0.016 Sum_probs=146.9
Q ss_pred eecCCcccccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCC
Q 018172 17 VISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY 96 (360)
Q Consensus 17 ~~~~~~~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~ 96 (360)
++++.+.+ + ++.|. +.+..+.+|+.+|. ....++++|+|.++..++.+++++||. |+++..|
T Consensus 193 ev~glD~L--~-~p~G~----I~eAq~~aA~~fgA-------~~t~FlvNGST~gn~a~i~a~~~~gd~----Vlv~RN~ 254 (755)
T PRK15029 193 ERTSLGSL--L-DHTGA----FGESEKYAARVFGA-------DRSWSVVVGTSGSNRTIMQACMTDNDV----VVVDRNC 254 (755)
T ss_pred cccCCCCC--C-CCCcH----HHHHHHHHHHHhCC-------CcEEEEeCChhHHHHHHHHHhcCCCCE----EEeeccc
Confidence 56665554 2 33444 49999999999995 468999999999999999999999998 9999999
Q ss_pred CCCcHHHHHHhCCeeeeecCCccc------cc--------------cCCCee--------EEEEcCCCCCCcccch-HHH
Q 018172 97 YSQYPAETDYLRSGLYKWDGDANT------FD--------------KNNGAY--------IEVVNSPNNPDGTIRE-AVL 147 (360)
Q Consensus 97 ~~~~~~~~~~~g~~~~~~~~~~~~------~~--------------~~~~~~--------~i~~~~p~NPtG~~~~-~~~ 147 (360)
|.+..+.+.+.|++++.+....+. +. ..+.++ ++++++|+ .-|++++ +.+
T Consensus 255 HKSv~~al~L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PT-Y~Gv~~di~~I 333 (755)
T PRK15029 255 HKSIEQGLILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYNAKEA 333 (755)
T ss_pred HHHHHHHHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCC-CcceeeCHHHH
Confidence 999999999999999987533211 11 123344 99999997 5899988 677
Q ss_pred HHHhhhcCcEEEEeecccC-----CCCCc---CC----CCCCcc-EEEeccccccCCCCceEE-EEeecCHH-H--HHHH
Q 018172 148 AKVNRSAEGKLIHDLAYYW-----PQYTP---IT----GAADHD-IMLFTLSKCTGHAGSRIG-WALVKDTE-V--ARKM 210 (360)
Q Consensus 148 ~~~~~~~~~~li~D~ay~~-----~~~~~---~~----~~~~~~-i~~~S~sK~~~~~G~r~G-~~~~~~~~-~--~~~l 210 (360)
.++|+++++.+++||||+. +.++. +. ...+.+ +++.|.||.++ ++..| ++...+.. . .+++
T Consensus 334 ~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~--alTQaS~LHv~~~~~~id~~r~ 411 (755)
T PRK15029 334 QDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN--ALSQASYIHVREGRGAINFSRF 411 (755)
T ss_pred HHHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhhccc--chhhhhhheeCCCccccCHHHH
Confidence 7777789999999999983 11221 10 113455 99999999975 44444 55552221 1 1344
Q ss_pred HHHHhhc-cccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 211 TRFIELG-SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 211 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
+...... +.+++-+....+-.+...+.. ...++..+.+.++...+++.+++++
T Consensus 412 ~~~l~~~qSTSPSY~LmASLD~ar~~m~~---~~G~~l~~~~i~~~~~~r~~l~~~~ 465 (755)
T PRK15029 412 NQAYMMHATTSPLYAICASNDVAVSMMDG---NSGLSLTQEVIDEAVDFRQAMARLY 465 (755)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 4333322 233333333222222222211 1233444445555556666665553
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-16 Score=137.70 Aligned_cols=295 Identities=14% Similarity=0.122 Sum_probs=204.0
Q ss_pred ccccCCCCccccccHHHHHHHHHH-HhhcCCCCCCCCcEEEc--CChHHHHHHHHHhh--cCCCCCCCceEEEeCCCCCC
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNL-HHVVDNAVSDGRHIVIG--TGSTQLYQAALYAL--SSPGGPEPISVVSAAPYYSQ 99 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~-~~~~~~~~~~~~~i~~t--~G~t~~l~~~~~~l--~~~gd~~~~~vl~~~p~~~~ 99 (360)
-.|-+..|. +++.+..+++ +| .+.+.-++.+|+.+ -++|.++......| +-++.. |.+|.|+|.+
T Consensus 89 KEYlpI~Gl-----~eF~k~sakLa~G-~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~----I~ip~PTWgN 158 (427)
T KOG1411|consen 89 KEYLPITGL-----AEFNKLSAKLALG-DNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRD----IYIPDPTWGN 158 (427)
T ss_pred chhccccch-----HHHHHHHHHHhhc-CCchhhhccceeEEEeccCcchhhHHHHHHHhhccccc----eeecCCcccc
Confidence 358899998 9999999998 55 34444455556544 55677877765554 445666 9999999999
Q ss_pred cHHHHHHhCCeeeeec--------CCcccccc-----CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEee
Q 018172 100 YPAETDYLRSGLYKWD--------GDANTFDK-----NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDL 162 (360)
Q Consensus 100 ~~~~~~~~g~~~~~~~--------~~~~~~~~-----~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ 162 (360)
...+++..|..+..+. +|.+++.. .+..-.++..+.|||||+-.+ +.+..+-++.+.+-+.|-
T Consensus 159 h~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDm 238 (427)
T KOG1411|consen 159 HKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDM 238 (427)
T ss_pred cCccccccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhh
Confidence 9999999999987554 23333222 234445555678999999877 244455556999999999
Q ss_pred cccCCCCCcC----------CCCCCccEEEeccccccCCCCceEEEE--eecCHHHHHHH----HHHHhhccccCChHHH
Q 018172 163 AYYWPQYTPI----------TGAADHDIMLFTLSKCTGHAGSRIGWA--LVKDTEVARKM----TRFIELGSIGVSKESQ 226 (360)
Q Consensus 163 ay~~~~~~~~----------~~~~~~~i~~~S~sK~~~~~G~r~G~~--~~~~~~~~~~l----~~~~~~~~~~~~~~~~ 226 (360)
+|.++.-..+ .......++..|+.|..|+.|.|+|.+ ++.+.+...++ ..+.+...++++..+.
T Consensus 239 AYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGA 318 (427)
T KOG1411|consen 239 AYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGA 318 (427)
T ss_pred hhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccch
Confidence 9995322221 134566788999999999999999964 55566555554 4444555566777777
Q ss_pred HHHHHHhccc--CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHH
Q 018172 227 LRAAKILGIV--SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEK 304 (360)
Q Consensus 227 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (360)
..++..|+.. ..++...+.-+.+++...|+.+.+.|...+-.. .+ ..+....++|.+..+. ++.+..
T Consensus 319 rIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~~------~W----~hI~~QIGMF~fTgl~-peQv~~ 387 (427)
T KOG1411|consen 319 RIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKEGSPG------NW----SHITKQIGMFCFTGLN-PEQVDW 387 (427)
T ss_pred hhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCCc------cH----HHHHHhhheeeecCCC-HHHHHH
Confidence 7777777742 234567778888999999999999998774211 00 1122334445444443 388888
Q ss_pred HHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHHh
Q 018172 305 LLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQG 349 (360)
Q Consensus 305 ~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~ 349 (360)
+-++++|++.- ++ |+|++. +......+.++|.++..
T Consensus 388 l~ke~~iYmT~-------dG--RiS~aG~ss~nV~yLa~aih~vtk 424 (427)
T KOG1411|consen 388 LTKEYHIYLTK-------DG--RISMAGLSSSNVPYLADAIHAVTK 424 (427)
T ss_pred HHhhheeeecc-------Cc--eEeeccccccCCcccchhhHhHhc
Confidence 88899999763 22 899977 77778888888877654
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.9e-14 Score=133.43 Aligned_cols=260 Identities=14% Similarity=0.047 Sum_probs=163.6
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CC-------------eeeeec--CCccc--
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RS-------------GLYKWD--GDANT-- 120 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~--~~~~~-- 120 (360)
+.+++++++++++..+++.... .|.. +|+...++|......+-.. +. .+..++ ...+.
T Consensus 118 ~~v~f~~sGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (443)
T PRK06058 118 KRSALFNSGAEAVENAVKIARSYTGRQ---AVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPK 194 (443)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhhCCC---eEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCccccccc
Confidence 3788888889999998885421 1222 3888899998887554332 11 111111 11100
Q ss_pred -------------c---c---cCCCeeEEEEcCCCCCC-cccch-----HHHHHHhhhcCcEEEEeecccCCCCCc-CC-
Q 018172 121 -------------F---D---KNNGAYIEVVNSPNNPD-GTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTP-IT- 173 (360)
Q Consensus 121 -------------~---~---~~~~~~~i~~~~p~NPt-G~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~-~~- 173 (360)
+ + ..+++.+|+ ..|.+.. |.+.+ +.+.++|+++|+++|.||++.+..... ..
T Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~~iAavi-~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa 273 (443)
T PRK06058 195 GLATDGEEAAARAITVIEKQVGADNLAAVI-IEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFA 273 (443)
T ss_pred ccccchHHHHHHHHHHHHHhhCCCceEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhH
Confidence 0 0 013344444 5565554 55543 467789999999999999998532111 11
Q ss_pred -CCC--CccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHH
Q 018172 174 -GAA--DHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRL 250 (360)
Q Consensus 174 -~~~--~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (360)
... .-++ -+++|.++ .|+++|++++ ++++++.+.......+++.|++++.++.+.|+.+.+. +..+.
T Consensus 274 ~~~~gv~PDi--v~~gK~l~-~G~Pi~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~------~l~~~ 343 (443)
T PRK06058 274 CEHEGIVPDL--ITTAKGIA-GGLPLSAVTG-RAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEED------DLVAR 343 (443)
T ss_pred HHhcCCCCCE--EEEccccc-CCCccEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHc------CHHHH
Confidence 111 1233 35579999 8999999999 7899888865555578889999999999999865432 34444
Q ss_pred HHHHHHHHHHHHHhc----CCcccCCCCCcccccccccCCCCCCcccccC-------Cch---HHHHHHHHhhCeeeeCC
Q 018172 251 MSERWNMLRQVIRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLES-------KED---EDCEKLLRAERIMARGG 316 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~l~~~gI~~~pg 316 (360)
.+++.+++.+.|+++ +.+.-....|.+ +.+.+ ++. ..+.+.+.++||.+.|+
T Consensus 344 ~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~--------------~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~ 409 (443)
T PRK06058 344 ARQIEALMTDRLRALAAEDDRIGDVRGRGAM--------------IAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTC 409 (443)
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEeeeccceE--------------EEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEecc
Confidence 455555555555543 322112233333 22222 111 44566677899999986
Q ss_pred CCCCCCCCeEEEE--ecCChHHHHHHHHHHHHHHhc
Q 018172 317 RRFGADAKYARVS--MLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 317 ~~f~~~~~~~R~s--~~~~~e~~~~~~~~l~~~~~~ 350 (360)
..|+ +++|+. +..++++++++++++.+++.+
T Consensus 410 ~~~~---~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 410 GTYG---NVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred CCCC---CEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 5554 489995 555999999999999999864
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-13 Score=130.30 Aligned_cols=285 Identities=15% Similarity=0.112 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC------cHHHHHHhCCeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ------YPAETDYLRSGLY 112 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~------~~~~~~~~g~~~~ 112 (360)
..+++.+++++|. + +.+++++++.++.+++..+ .+||+ |++++..+.. ....++..|++++
T Consensus 130 ~~~e~~lA~l~Ga-------e-~a~vv~sgtaAl~l~l~~l-~~Gde----VIvs~~e~~~~ggs~~i~~~~~~~G~~l~ 196 (464)
T PRK04311 130 RALAALLCALTGA-------E-DALVVNNNAAAVLLALNAL-AAGKE----VIVSRGELVEIGGAFRIPDVMRQAGARLV 196 (464)
T ss_pred HHHHHHHHHHhCC-------C-eEEEECCHHHHHHHHHHHh-CCCCE----EEEcchhhhhcCcchhhHHHHHHCCcEEE
Confidence 6889999999984 3 4677777889998888664 67888 9999764432 2345677899998
Q ss_pred eecCCcc----cccc--CCCeeEEEEcCCCCC--Cc--ccch-HHHHHHhhhcCcEEEEeecccC---------CCCCcC
Q 018172 113 KWDGDAN----TFDK--NNGAYIEVVNSPNNP--DG--TIRE-AVLAKVNRSAEGKLIHDLAYYW---------PQYTPI 172 (360)
Q Consensus 113 ~~~~~~~----~~~~--~~~~~~i~~~~p~NP--tG--~~~~-~~~~~~~~~~~~~li~D~ay~~---------~~~~~~ 172 (360)
.++.+.. .+.. +++|++|++.+++|| +| ...+ +.+.++|+++|+++++|.+.+. ...+.+
T Consensus 197 ~v~~~~~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~ 276 (464)
T PRK04311 197 EVGTTNRTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTV 276 (464)
T ss_pred EECCCCCCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCch
Confidence 8875421 2222 578999999999998 45 3445 6788888889999999995431 011111
Q ss_pred C--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCc--------hh
Q 018172 173 T--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY--------PN 242 (360)
Q Consensus 173 ~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 242 (360)
. -..+.+++++|.+|.+|-| ..|++++ ++++++.+++...............+..+.+....+.. ..
T Consensus 277 ~~~l~~GaDiv~fSg~K~LgGp--~~G~i~g-~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~ 353 (464)
T PRK04311 277 QELLAAGVDLVTFSGDKLLGGP--QAGIIVG-KKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLR 353 (464)
T ss_pred hhHHhcCCcEEEecCcccccCC--ceEEEEE-cHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHH
Confidence 1 2367899999999988734 4898888 78888888753333333444454444444443111100 02
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC----cccCCC---CCcccccccccCCCCCCc-ccccCCc--hHHHHHHHHhhC--
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGV----FGLPEY---PLEYCNFTGKFTNSHPGF-AWLESKE--DEDCEKLLRAER-- 310 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~l~~~g-- 310 (360)
.+....+.++++.+.+.+.|+.+.. ..+... .|+. +.... ..+.+ +.++..+ ...+.+.|++..
T Consensus 354 ~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg-s~p~~---~~~~~~v~~~~~~~~~~~l~~~lr~~~~~ 429 (464)
T PRK04311 354 LLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGG-SLPVD---RLPSAAVTLTPKDRSLEALAARLRLLPPP 429 (464)
T ss_pred HhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCC-CCcCC---CCCeEEEEEeCCCCCHHHHHHHHhcCCCC
Confidence 2333346667788888888877641 122211 1111 11110 11111 2233222 278888898854
Q ss_pred eeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHHh
Q 018172 311 IMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQG 349 (360)
Q Consensus 311 I~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~ 349 (360)
|..+. .++.+.+-+-. .++|++.+++++.+++.
T Consensus 430 i~~r~------~~~~~~ld~r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 430 VIGRI------EDGRLLLDLRTLEEEDEERLAAALLEALN 463 (464)
T ss_pred EEEEE------ECCEEEEEeCcCCHHHHHHHHHHHHHHhh
Confidence 44442 46678887755 88999999999998864
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-14 Score=124.33 Aligned_cols=288 Identities=16% Similarity=0.137 Sum_probs=194.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~ 113 (360)
...|++.++.+.|- .. -+.+++++.++..++..|.++||+ |+.+.--|...... ++.+|+++..
T Consensus 64 ~~vlE~RiAaLEGG-------~a-a~a~aSG~AA~~~ai~~la~aGD~----iVss~~LYGGT~~lf~~tl~~~Gi~v~f 131 (426)
T COG2873 64 TDVLEERIAALEGG-------VA-ALAVASGQAAITYAILNLAGAGDN----IVSSSKLYGGTYNLFSHTLKRLGIEVRF 131 (426)
T ss_pred HHHHHHHHHHhhcc-------hh-hhhhccchHHHHHHHHHhccCCCe----eEeeccccCchHHHHHHHHHhcCcEEEE
Confidence 38899999999773 22 344555689999999999999999 99998888887766 4667999999
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ ++.+.. +++||+|++.+-.||-+.+.+ +.+.++|+++++.+|+|..+..+ +..-+-..+.+|+++|.||..
T Consensus 132 vd~~d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atp-yl~rP~~hGADIVvHS~TK~i 210 (426)
T COG2873 132 VDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATP-YLCRPIEHGADIVVHSATKYI 210 (426)
T ss_pred eCCCCHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcc-eecchhhcCCCEEEEeecccc
Confidence 9755 366655 789999999999999999999 78889999999999999998764 444556788899999999998
Q ss_pred CCCCceEEEEeecCHHHHHHH----------------------------------HHHHhhccccCChHHHHHHHHHhcc
Q 018172 190 GHAGSRIGWALVKDTEVARKM----------------------------------TRFIELGSIGVSKESQLRAAKILGI 235 (360)
Q Consensus 190 ~~~G~r~G~~~~~~~~~~~~l----------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (360)
|-.|--+|.++. +....+.- ....+..+.+.+++........+
T Consensus 211 gGhGt~iGG~iV-D~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGl-- 287 (426)
T COG2873 211 GGHGTAIGGVIV-DGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGL-- 287 (426)
T ss_pred cCCccccceEEE-eCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhch--
Confidence 878888888877 32111111 00111123344444444443333
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcc----ccccccc-CCCCCCcccccCCch----HHHHHHH
Q 018172 236 VSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEY----CNFTGKF-TNSHPGFAWLESKED----EDCEKLL 306 (360)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~l 306 (360)
+-+.-..++-.++...+.+.|.++|.+..+.++|.. +....++ ..+.+..+.+.++++ ..+.+.|
T Consensus 288 ------ETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~fi~~l 361 (426)
T COG2873 288 ------ETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDAL 361 (426)
T ss_pred ------hhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecChHHHHHHHHHHH
Confidence 333444566677888999999999988888777532 1111112 234445677888775 2222222
Q ss_pred H----------hhCeeeeCCCCC------------CCCCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 307 R----------AERIMARGGRRF------------GADAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 307 ~----------~~gI~~~pg~~f------------~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
+ .+-+.+-|.+-. |..++.+|+|+.. |+++.++.-|++.++
T Consensus 362 ~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVGI--Ed~~DiiaDl~qAl~ 424 (426)
T COG2873 362 KLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGI--EDIDDIIADLEQALE 424 (426)
T ss_pred HHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEecc--CCHHHHHHHHHHHHh
Confidence 1 223344454322 3347789999866 233445555555544
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-13 Score=128.05 Aligned_cols=268 Identities=13% Similarity=0.041 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcE--EEcCChHHHHHHHHHhhcC--CCCCCCceEEEeCCCCCCcHHHHHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHI--VIGTGSTQLYQAALYALSS--PGGPEPISVVSAAPYYSQYPAETDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i--~~t~G~t~~l~~~~~~l~~--~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~ 114 (360)
.++++.++++++. +++++ ++|+|+|+++...+....+ +++. |+++.-.|.+...+++.+|.++..+
T Consensus 69 ~~v~~~ia~llg~------~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~----vi~s~~~H~Sv~kaa~~lg~~~~~V 138 (374)
T PLN03032 69 VGVLDWFARLWEL------EKDEYWGYITTCGTEGNLHGILVGREVFPDGI----LYASRESHYSVFKAARMYRMEAVKV 138 (374)
T ss_pred HHHHHHHHHHhCC------CCccCCEEEeCchHHHHHHHHHHHHHhCCCcE----EEeCCCceeHHHHHHHHcCCCCeEe
Confidence 3445555566664 44455 9999999999887776542 3344 9999999999999999999998888
Q ss_pred cCCccccc-c-------CC---CeeEEEEcCCCCCCcccch-HHHHHHhhhcC-----cEEEEeecccCCCCCc------
Q 018172 115 DGDANTFD-K-------NN---GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAE-----GKLIHDLAYYWPQYTP------ 171 (360)
Q Consensus 115 ~~~~~~~~-~-------~~---~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~-----~~li~D~ay~~~~~~~------ 171 (360)
+.|.++.. . ++ ++.+|+++..||+||.+-+ +++.++|+++| +|+.+|.+|+++..+.
T Consensus 139 ~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~ 218 (374)
T PLN03032 139 PTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPE 218 (374)
T ss_pred eeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcc
Confidence 87755332 1 12 5778888999999999988 78888888886 5899999998643221
Q ss_pred CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc-----cc--cCChHHHHHHHHHhcccCCCchhHH
Q 018172 172 ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG-----SI--GVSKESQLRAAKILGIVSDDYPNFF 244 (360)
Q Consensus 172 ~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~-----~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (360)
+......+.+..|.+|.++ ....+|.++.+ .+..+.+.....+. +. +-+......+...+..+ + .+-+
T Consensus 219 ~~~~~~vDSis~s~HK~~g-~P~g~G~ll~r-~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~-G--~~g~ 293 (374)
T PLN03032 219 VTFRKPIGSVSVSGHKFLG-CPMPCGVALTR-KKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRK-G--YRGI 293 (374)
T ss_pred cCCCcCCcEEEECcccccC-CCcCeEEEEEE-chhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHh-C--HHHH
Confidence 1112245678889999887 34458988884 45555442211111 11 22233444555555533 2 2677
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCC
Q 018172 245 EYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAK 324 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~ 324 (360)
.+..++..++.+++.+.|++.+...+..|... .+.+..+..+. +. +|-.+.+ .++
T Consensus 294 ~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~~--------------~V~f~~~~~~~----~~-~~w~l~~------~~~ 348 (374)
T PLN03032 294 KRDVQHCMRNAHYLKDRLTEAGLTCRLNELSS--------------TVVFERPMDEA----FI-KKWQLAC------EGD 348 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEECCCce--------------EEEEcCCCcHh----Hh-heeeecc------cCC
Confidence 77778888888999999988754444444321 23344433221 11 2332222 245
Q ss_pred eEEEEecC--ChHHHHHHHHHHHH
Q 018172 325 YARVSMLS--REEIFNIFLERLSA 346 (360)
Q Consensus 325 ~~R~s~~~--~~e~~~~~~~~l~~ 346 (360)
.+|+++.. +++.++++++.|++
T Consensus 349 ~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 349 IAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhc
Confidence 89998866 77999999988875
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-13 Score=131.19 Aligned_cols=267 Identities=12% Similarity=-0.001 Sum_probs=161.2
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHhCC-------------eeeeecCCccc--
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYLRS-------------GLYKWDGDANT-- 120 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~-- 120 (360)
+.+.+++++++++..+++.... .|.+.+.+|+.-+-+|......+..... .+..++...+.
T Consensus 103 ~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 182 (423)
T PRK05964 103 DHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYE 182 (423)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhH
Confidence 4799999999999999887632 1211123588888878765543322211 11222222111
Q ss_pred ----------ccc-CCCeeEEEEcC-CCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCc-C-C-CCCCccE
Q 018172 121 ----------FDK-NNGAYIEVVNS-PNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTP-I-T-GAADHDI 180 (360)
Q Consensus 121 ----------~~~-~~~~~~i~~~~-p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~-~-~-~~~~~~i 180 (360)
+.. ..+..+|++.. .++..|...+ +.+.++|+++|+++|+||++.+..... . . ...+...
T Consensus 183 ~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~p 262 (423)
T PRK05964 183 QATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSP 262 (423)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCC
Confidence 111 23455566544 3667887764 466789999999999999997422111 1 1 1122222
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHH------HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRF------IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSER 254 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 254 (360)
-+.+++|.++-.++++|++++ ++++.+.+... ....+++.|+++..++.+.++.+.+. ...++.+ ++
T Consensus 263 Di~~~~K~l~gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~--~~~~~~~----~~ 335 (423)
T PRK05964 263 DIMCLSKGLTGGYLPLAATLC-TAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDE--PVLERVA----AL 335 (423)
T ss_pred CeeeeehhhhcCcccceEEEE-cHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhc--CHHHHHH----HH
Confidence 245788999833389999888 89999888532 12345568889988888888865432 4444444 44
Q ss_pred HHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc------hHHHHHHHHhhCeeeeCCCCCCCCCCeEEE
Q 018172 255 WNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE------DEDCEKLLRAERIMARGGRRFGADAKYARV 328 (360)
Q Consensus 255 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~ 328 (360)
-+++.+.|+++....... .+.+.+.++.+.+.+ ...+.+.|.++||.+.+. .+.+||
T Consensus 336 g~~l~~~l~~l~~~~~i~-----------~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~------~~~lR~ 398 (423)
T PRK05964 336 SAGLAEGLEPFRDLPGVA-----------DVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPL------GNTIYL 398 (423)
T ss_pred HHHHHHHHHhhccCCCeE-----------EeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEec------CCEEEE
Confidence 444444444432111100 011223333343332 256777888999999872 247999
Q ss_pred Eec--CChHHHHHHHHHHHHHHhc
Q 018172 329 SML--SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 329 s~~--~~~e~~~~~~~~l~~~~~~ 350 (360)
+.. .++++++++++++.+++.+
T Consensus 399 ~p~l~~t~edId~~v~~l~~al~~ 422 (423)
T PRK05964 399 MPPYIITAEELDRITDAIVEVADE 422 (423)
T ss_pred eCCcccCHHHHHHHHHHHHHHHhh
Confidence 865 4999999999999999864
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=136.17 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=111.5
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH-HHHhCCeeeeecC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE-TDYLRSGLYKWDG 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~-~~~~g~~~~~~~~ 116 (360)
..+..+.+|+.+|. .+..++++|+|.++..++.+++.+||. ||++..||.+..+. +.+.|++++.+..
T Consensus 176 i~eAq~~AA~~fgA-------d~tyFlvNGTS~gn~a~i~a~~~~Gd~----VLvdRN~HKSv~hgaLiLsGa~PVYl~P 244 (720)
T PRK13578 176 AKDAQKHAAKVFNA-------DKTYFVLNGTSASNKVVTNALLTPGDL----VLFDRNNHKSNHHGALIQAGATPVYLET 244 (720)
T ss_pred HHHHHHHHHHHhCC-------CceEEEeCChhHHHHHHHHHhcCCCCE----EEeecccHHHHHHHHHHHcCCeEEEeec
Confidence 49999999999995 468999999999999999999999998 99999999999985 8999999998764
Q ss_pred Ccccc------c--------------cC-CC-------eeEEEEcCCCCCCcccch-HHHHH-HhhhcCcEEEEeecccC
Q 018172 117 DANTF------D--------------KN-NG-------AYIEVVNSPNNPDGTIRE-AVLAK-VNRSAEGKLIHDLAYYW 166 (360)
Q Consensus 117 ~~~~~------~--------------~~-~~-------~~~i~~~~p~NPtG~~~~-~~~~~-~~~~~~~~li~D~ay~~ 166 (360)
..+.+ . .. ++ .+++++++|+ .-|.+++ +.+.+ +++.++ .|++||||+.
T Consensus 245 ~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pT-YdG~~ydi~~I~~~~~h~~~-~llvDEAhga 322 (720)
T PRK13578 245 ARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGT-YDGTIYNARQVVDKIGHLCD-YILFDSAWVG 322 (720)
T ss_pred cccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCC-CcceeecHHHHHHHhhccCC-cEEEeCcchh
Confidence 32211 1 01 22 5899999997 5899988 44544 477667 9999999983
Q ss_pred -CC-------CCcCCCCCCc----cEEEeccccccCCCCceEE-EEee
Q 018172 167 -PQ-------YTPITGAADH----DIMLFTLSKCTGHAGSRIG-WALV 201 (360)
Q Consensus 167 -~~-------~~~~~~~~~~----~i~~~S~sK~~~~~G~r~G-~~~~ 201 (360)
.. ++......+. ++++.|.||.++ ++-.+ ++..
T Consensus 323 h~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~--alTQaS~LHv 368 (720)
T PRK13578 323 YEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQA--GFSQTSQIHK 368 (720)
T ss_pred hhccCcccccCChhhhhcCCCCCCeEEEEChhhcch--hhhhHhhhhc
Confidence 11 1212122333 389999999875 44444 5555
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=134.92 Aligned_cols=235 Identities=16% Similarity=0.067 Sum_probs=147.8
Q ss_pred eeecCCcccccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCC
Q 018172 16 MVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAP 95 (360)
Q Consensus 16 ~~~~~~~~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p 95 (360)
++.++.+.+ .++.|. +.+.++.+|+.+|. .+..++++|+|.++..++.+++++||. |+++..
T Consensus 53 te~~~lD~L---~~p~G~----I~eAe~~aA~~fGA-------d~t~flvnGsT~g~~a~i~a~~~~gd~----VLv~RN 114 (417)
T PF01276_consen 53 TEVPGLDDL---HDPEGI----IKEAEELAARAFGA-------DKTFFLVNGSTSGNQAMIMALCRPGDK----VLVDRN 114 (417)
T ss_dssp TTSTTCBBT---TTTBTH----HHHHHHHHHHHHTE-------SEEEEESSHHHHHHHHHHHHHTTTTCE----EEEETT
T ss_pred hcccccCcc---cCCccH----HHHHHHHHHHhcCC-------CeEEEEecCchHHHHHHHHHhcCCCCE----EEEcCC
Confidence 455665543 344555 59999999999995 458999999999999999999999998 999999
Q ss_pred CCCCcHHHHHHhCCeeeeecCCcccc--------------------ccCCCeeE---EEEcCCCCCCcccch-HHHHHHh
Q 018172 96 YYSQYPAETDYLRSGLYKWDGDANTF--------------------DKNNGAYI---EVVNSPNNPDGTIRE-AVLAKVN 151 (360)
Q Consensus 96 ~~~~~~~~~~~~g~~~~~~~~~~~~~--------------------~~~~~~~~---i~~~~p~NPtG~~~~-~~~~~~~ 151 (360)
||.++...+.+.|++++.++...+.+ ...+..++ +++++|+ .-|++++ +.+.++|
T Consensus 115 ~HkSv~~alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PT-Y~Gv~~di~~I~~~~ 193 (417)
T PF01276_consen 115 CHKSVYNALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPT-YYGVCYDIKEIAEIC 193 (417)
T ss_dssp --HHHHHHHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE-HHHHHHHH
T ss_pred cHHHHHHHHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCC-CCeEEECHHHHHHHh
Confidence 99999999999999999776432211 11345555 9999997 5899998 6777777
Q ss_pred hhcCcEEEEeecccC-CCCCcCC---CCCCcc-------EEEeccccccCCCCce-EEEEeecCHH--HHHHHHHHHhh-
Q 018172 152 RSAEGKLIHDLAYYW-PQYTPIT---GAADHD-------IMLFTLSKCTGHAGSR-IGWALVKDTE--VARKMTRFIEL- 216 (360)
Q Consensus 152 ~~~~~~li~D~ay~~-~~~~~~~---~~~~~~-------i~~~S~sK~~~~~G~r-~G~~~~~~~~--~~~~l~~~~~~- 216 (360)
.++++.|++||||+. ..+.+++ ...+.+ +++.|.+|.++ ++. .+++...+.. -.+++......
T Consensus 194 h~~~~~llvDEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~--altQts~lh~~~~~~v~~~~~~~~l~~~ 271 (417)
T PF01276_consen 194 HKHGIPLLVDEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLP--ALTQTSMLHVKGDRIVDHERVNEALSMH 271 (417)
T ss_dssp CCTECEEEEE-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSS--S-TT-EEEEEETCCCTTHHHHHHHHHHH
T ss_pred cccCCEEEEEccccccccCCCCccchhhccCccccccceeeeechhhccc--ccccceEEEecCCCcccHHHHHHHHHHH
Confidence 789999999999983 1111222 233444 99999999875 333 4566664332 23445443332
Q ss_pred ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHH---HhcCCcccCCCC
Q 018172 217 GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVI---RQSGVFGLPEYP 274 (360)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~~~~~~ 274 (360)
.+.+++-+....+..+...+.. ..-++..+...++.+.+++.+ +++.++.+..|+
T Consensus 272 ~TTSPSY~lmASlD~a~~~m~~---~~G~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~ 329 (417)
T PF01276_consen 272 QTTSPSYPLMASLDVARAQMEE---EEGRELLEEAIELAEEFRKKINRLNDIWGFKVLGPE 329 (417)
T ss_dssp S-SS--HHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-S
T ss_pred cCCChHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHhcCCCceEecCCcc
Confidence 2334444433333333332211 344455555556666666666 555555555443
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-13 Score=127.27 Aligned_cols=263 Identities=15% Similarity=0.124 Sum_probs=161.2
Q ss_pred cEEE-cCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CC------------eeeeecCCc------c
Q 018172 61 HIVI-GTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RS------------GLYKWDGDA------N 119 (360)
Q Consensus 61 ~i~~-t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~------~ 119 (360)
.+.+ ++++++++..+++.... .|. .+|+.-+.+|......+... |. .+..+|.+. +
T Consensus 100 ~~~f~~~sGseA~e~AlklAr~~tgr---~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 176 (412)
T TIGR02407 100 KVQFPGPTGTNAVESALKLARKVTGR---SNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVD 176 (412)
T ss_pred eEEEeCCCchHHHHHHHHHHhhhcCC---CeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchh
Confidence 4655 58899999999887743 232 24888777777775443322 21 112222211 1
Q ss_pred c---ccc--C------CCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcC----CCCCCc
Q 018172 120 T---FDK--N------NGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPI----TGAADH 178 (360)
Q Consensus 120 ~---~~~--~------~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~----~~~~~~ 178 (360)
. ++. + +++.+|++....++.|...+ +.+.++|+++|+++|+||++.+. ..... ......
T Consensus 177 ~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~P 256 (412)
T TIGR02407 177 TIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEP 256 (412)
T ss_pred HHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCC
Confidence 1 110 0 24567777666788998643 46778999999999999999732 11101 011122
Q ss_pred cEEEeccccccCCC-CceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcc-cCCC-chhHHHHHHHHHHHHH
Q 018172 179 DIMLFTLSKCTGHA-GSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGI-VSDD-YPNFFEYGRRLMSERW 255 (360)
Q Consensus 179 ~i~~~S~sK~~~~~-G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~~~ 255 (360)
+ +.+++|.++ + |+++|++++ ++++ +.+.......+++.|+++..++.+.++. +.+. +.+.+.++.+.++++.
T Consensus 257 D--i~~~~K~lg-~~G~pigav~~-~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l 331 (412)
T TIGR02407 257 D--IVCLSKSIS-GYGLPLALTLI-KPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERL 331 (412)
T ss_pred C--EEEechhcc-CCccceeEEEE-chhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3 346789999 6 999999999 5665 5544333446778888888887777773 4332 2233333333333333
Q ss_pred HHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC
Q 018172 256 NMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSMLS 332 (360)
Q Consensus 256 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~ 332 (360)
+ +..+.++.... .+++.+.++|+.+++. ..+...+.++||.+.+...+ .+.+|++...
T Consensus 332 ~---~l~~~~~~~~~-------------~vrg~Gl~~~l~l~~~~~~~~~~~~~~~~Gv~v~~~~~~---~~~lr~~p~l 392 (412)
T TIGR02407 332 D---RIVAEYPELIK-------------QVRGRGLMQGIECGDGDLAGKIAKAAFENGLIIETSGPN---DEVIKLLPPL 392 (412)
T ss_pred H---HHHhhCCCceE-------------eeecceeEEEEEecChHHHHHHHHHHHHCCCEEeccCCC---CCEEEEECCC
Confidence 3 22233331111 1224455789988764 56778888999999874322 4579997644
Q ss_pred --ChHHHHHHHHHHHHHHhc
Q 018172 333 --REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 333 --~~e~~~~~~~~l~~~~~~ 350 (360)
++++++++++++.+.+.+
T Consensus 393 ~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 393 TIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 999999999999998853
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-12 Score=121.04 Aligned_cols=290 Identities=10% Similarity=-0.017 Sum_probs=188.6
Q ss_pred ccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH-HH
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE-TD 105 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~-~~ 105 (360)
|.....+ .+|++++++++|. + .++.|+++|.++++++...+++||. | +.++|...... +.
T Consensus 67 yag~~s~-----~~lE~~va~~~G~-------~-~av~v~sGT~Al~ll~~l~l~pGDe----V--psn~~f~Tt~ahIe 127 (450)
T TIGR02618 67 YAGSRNF-----YHLERTVRELYGF-------K-YVVPTHQGRGAENLLSQIAIKPGDY----V--PGNMYFTTTRYHQE 127 (450)
T ss_pred hcCCCcH-----HHHHHHHHHHHCC-------C-eEEEcCCHHHHHHHHHHhCCCCcCE----E--CCceeHHHHHHHHH
Confidence 5544444 8999999999995 3 6999999999999888777899996 6 66777555554 67
Q ss_pred HhCCeeeeecCC----------------cccccc--C----CCeeEEEEcCCCCCC-cccch----HHHHHHhhhcCcEE
Q 018172 106 YLRSGLYKWDGD----------------ANTFDK--N----NGAYIEVVNSPNNPD-GTIRE----AVLAKVNRSAEGKL 158 (360)
Q Consensus 106 ~~g~~~~~~~~~----------------~~~~~~--~----~~~~~i~~~~p~NPt-G~~~~----~~~~~~~~~~~~~l 158 (360)
..|+.++.++.+ .+.++. + +++++|.+.+++|-. |..++ +.+.++|+++|+.+
T Consensus 128 ~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~v 207 (450)
T TIGR02618 128 KNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKV 207 (450)
T ss_pred hCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEE
Confidence 788877666332 111111 1 245578888888854 78866 56778899999999
Q ss_pred EEeecccCCCCCc-------CCC----------CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc----
Q 018172 159 IHDLAYYWPQYTP-------ITG----------AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG---- 217 (360)
Q Consensus 159 i~D~ay~~~~~~~-------~~~----------~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~---- 217 (360)
+.|.+...++.-. ..+ ....+.+++|..|.++.+- .|++++.++++.+.++......
T Consensus 208 i~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~--GG~l~~~d~~l~~k~r~~~~~~eG~~ 285 (450)
T TIGR02618 208 FYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNI--GGFLCMNDDEMFQSAKELVVVFEGMP 285 (450)
T ss_pred EEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCC--ceEEEeCCHHHHHHHHHHhhhcCCcc
Confidence 9999987532111 111 1245679999999887662 2777767999999998775322
Q ss_pred ccc-CChHHHHHHHHHhcccCCCchhHHH-HHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCccccc
Q 018172 218 SIG-VSKESQLRAAKILGIVSDDYPNFFE-YGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLE 295 (360)
Q Consensus 218 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (360)
+++ ...-...+++..|.. .++ ...+.-....++|.+.|.+. ++.+..|.++...|.+... +...
T Consensus 286 tyGgla~r~~~ala~gL~e-------~~~~~y~~~r~~~a~~La~~L~~~-Gvpv~~p~ggh~V~vda~~------~lph 351 (450)
T TIGR02618 286 SYGGLAGRDMEAMAIGIRE-------AVDYEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARR------FLPH 351 (450)
T ss_pred ccCchhhhhHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCcceEEEEhHH------hCCC
Confidence 111 222333333444442 222 22233333467888888888 6767777777655443211 1122
Q ss_pred CC-----chHHHHHHHHhhCeeeeC-CCC-CCCC----------CCeEEEEecC---ChHHHHHHHHHHHHHHhch
Q 018172 296 SK-----EDEDCEKLLRAERIMARG-GRR-FGAD----------AKYARVSMLS---REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 296 ~~-----~~~~~~~~l~~~gI~~~p-g~~-f~~~----------~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~ 351 (360)
++ ....+..+-.+.||--.- |+. ++.+ -..+|+.+-. +.+.++...+++..+.++.
T Consensus 352 ~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~ 427 (450)
T TIGR02618 352 IPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHR 427 (450)
T ss_pred CChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhH
Confidence 22 226677777888886432 332 1211 2469999855 8899999999999998764
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=118.20 Aligned_cols=276 Identities=15% Similarity=0.076 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC-C
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG-D 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~-~ 117 (360)
+.|+..+|+|+++ +| .++.+.+-++...++.+++.|.|. |+..+-.|.++...++++. +...+++ +
T Consensus 115 k~LE~kiAqfh~r-------ED-~ilypscfdANag~feail~pedA----vfSDeLNhASIIdGirLck-ry~h~dv~~ 181 (417)
T KOG1359|consen 115 KLLESKIAQFHGR-------ED-TILYPSCFDANAGAFEAILTPEDA----VFSDELNHASIIDGIRLCK-RYRHVDVFD 181 (417)
T ss_pred HHHHHHHHHHhCC-------Cc-eEEeccccccchHHHHHhcChhhh----hhccccccchhhhhhHHHh-hhccchhHH
Confidence 8999999999994 54 555556688888899999999998 8888899998888887765 2222211 1
Q ss_pred cccccc---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC--------cCCCCCCccEEEecc
Q 018172 118 ANTFDK---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT--------PITGAADHDIMLFTL 185 (360)
Q Consensus 118 ~~~~~~---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~--------~~~~~~~~~i~~~S~ 185 (360)
.+.-.. +.+-|+|+....-...|.+.| +++..++++||.++++||+|+.+.+. .+.-..+.+++.+++
T Consensus 182 l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTL 261 (417)
T KOG1359|consen 182 LEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTL 261 (417)
T ss_pred HHHHHHHhhhheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhh
Confidence 111111 346677777777778999988 78889999999999999999842211 111245678899999
Q ss_pred ccccCCCCceEEEEeecCHHHHHHHHHHHhhcccc--CChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIG--VSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIR 263 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 263 (360)
+|++| |.-.||..+ +..+++-+++-....-++ .++..-..+..+++.+.. -.+..++.+.+.+++.+.+.
T Consensus 262 gKAlG--ga~GGyttg-p~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~-----s~~~i~~~~a~~qrfr~~me 333 (417)
T KOG1359|consen 262 GKALG--GASGGYTTG-PKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMV-----SSKEIQSRQANTQRFREFME 333 (417)
T ss_pred hhhhc--CCCCCCccC-ChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHH
Confidence 99987 333499988 899999887654432222 222222222223332211 22344556666677777766
Q ss_pred hcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEecC--ChHH
Q 018172 264 QSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGA--DAKYARVSMLS--REEI 336 (360)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~~--~~e~ 336 (360)
.. ++.+.... .+ ...+-+.+. ....+.|.+.||++...++.-. +...+|+.++. ++|+
T Consensus 334 ~a-GftIsg~~-------------hP-I~pv~lGda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~ed 398 (417)
T KOG1359|consen 334 AA-GFTISGAS-------------HP-ICPVMLGDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEED 398 (417)
T ss_pred hc-CceecCCC-------------CC-ccceecccHHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHH
Confidence 55 34432211 00 122333343 5567778889999875443322 23457777655 9999
Q ss_pred HHHHHHHHHHHHhc
Q 018172 337 FNIFLERLSAIQGG 350 (360)
Q Consensus 337 ~~~~~~~l~~~~~~ 350 (360)
++++++++.++.+-
T Consensus 399 id~~i~Af~~vgr~ 412 (417)
T KOG1359|consen 399 IDRLIEAFSEVGRF 412 (417)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988653
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-13 Score=127.56 Aligned_cols=260 Identities=12% Similarity=0.092 Sum_probs=159.8
Q ss_pred CcEEEcCChHHHHHHHHHhhcC------CCCCCCceEEEeCCCCCCcH-HHHHHhCCeee---------eec----CCcc
Q 018172 60 RHIVIGTGSTQLYQAALYALSS------PGGPEPISVVSAAPYYSQYP-AETDYLRSGLY---------KWD----GDAN 119 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~------~gd~~~~~vl~~~p~~~~~~-~~~~~~g~~~~---------~~~----~~~~ 119 (360)
+.+++++++++++..+++.+.. +|. .+|+..+..|.... ..+...|.... .++ .|.+
T Consensus 94 ~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r---~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~ 170 (395)
T PRK03715 94 DKVFFANSGAEANEGAIKLARKWGRKHKNGA---YEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIA 170 (395)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHhhccCCCC---cEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHH
Confidence 4799999999999999988752 222 23777777777654 33333332210 010 1111
Q ss_pred cccc--CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcC-C-CCC--CccEEEecccc
Q 018172 120 TFDK--NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPI-T-GAA--DHDIMLFTLSK 187 (360)
Q Consensus 120 ~~~~--~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~-~-~~~--~~~i~~~S~sK 187 (360)
.++. ++++.+|++...++..|...+ +.+.++|+++|+++|+||++.+. ..... . ... ..+ +.+++|
T Consensus 171 ~l~~~l~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PD--i~t~gK 248 (395)
T PRK03715 171 SVEKLITDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPD--IMTLGK 248 (395)
T ss_pred HHHHHcCCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCc--eeeehh
Confidence 1111 245677777766667777754 46778899999999999999842 11111 0 111 223 467889
Q ss_pred ccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 188 CTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 188 ~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
.++ .|+.+|.+++ .+++.. +.......+++.++++..++.+.++.+.+. +..++++++-+++.+.|+++..
T Consensus 249 ~lg-~G~p~~av~~-~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~~~------~l~~~~~~~g~~l~~~L~~l~~ 319 (395)
T PRK03715 249 GIG-GGVPLAALLA-KAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLAP------GFLEGVRARGEYLKEKLLELSE 319 (395)
T ss_pred hhh-CCcceEEEEE-cccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHhh
Confidence 999 7899999988 666642 222122356677888888888888765432 3445555555666666654410
Q ss_pred -cccCCCCCcccccccccCCCCCCcccccCCch--HHHHHHHHhh---CeeeeCCCCCCCCCCeEEEEecC--ChHHHHH
Q 018172 268 -FGLPEYPLEYCNFTGKFTNSHPGFAWLESKED--EDCEKLLRAE---RIMARGGRRFGADAKYARVSMLS--REEIFNI 339 (360)
Q Consensus 268 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~---gI~~~pg~~f~~~~~~~R~s~~~--~~e~~~~ 339 (360)
..+.. +++.+.++.+.+.+. ..+.+.+.+. ||.+.+. ..+.+||+... +++++++
T Consensus 320 ~~~i~~------------vrG~Glm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~~~-----~~~~lR~~p~l~~t~~ei~~ 382 (395)
T PRK03715 320 ERGLEG------------ERGEGLLRALLLGKDIGPQIVEKARDMQPDGLLLNAP-----RPNLLRFMPALNVTTEEIDQ 382 (395)
T ss_pred cCCcCe------------EEcceeEEEEEecCchHHHHHHHHHhccCCCEEEeec-----CCCEEEEeCCcccCHHHHHH
Confidence 00111 123344555655442 3445555555 9998652 13589998754 9999999
Q ss_pred HHHHHHHHHhc
Q 018172 340 FLERLSAIQGG 350 (360)
Q Consensus 340 ~~~~l~~~~~~ 350 (360)
++++|.+.+.+
T Consensus 383 ~~~~l~~~l~~ 393 (395)
T PRK03715 383 MIAMLRSVLDK 393 (395)
T ss_pred HHHHHHHHHHh
Confidence 99999998864
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-12 Score=125.56 Aligned_cols=268 Identities=10% Similarity=0.022 Sum_probs=165.1
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHH-HhCCe-------------eeeecCCc------
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETD-YLRSG-------------LYKWDGDA------ 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~-~~g~~-------------~~~~~~~~------ 118 (360)
+.|.+++++++++..+++.... .|.+ +|+.-+.+|......+- ..+.. +..++.+.
T Consensus 104 ~~v~f~~SGseA~e~AiklAr~~tgr~---~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 180 (445)
T PRK08593 104 KRVTFGLSGSDANDGIIKFARAYTGRP---YIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMY 180 (445)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCC---eEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccc
Confidence 4799999999999999886532 2332 37777777776643332 22211 12222110
Q ss_pred ------------cccc-------cCCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCc-CC
Q 018172 119 ------------NTFD-------KNNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTP-IT 173 (360)
Q Consensus 119 ------------~~~~-------~~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~-~~ 173 (360)
+.++ ..+++.+|++....+..|.+.+ +.+.++|+++|+++|+||++.+..... ..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~ 260 (445)
T PRK08593 181 EEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWS 260 (445)
T ss_pred cCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHH
Confidence 0010 0245667777776777788744 467789999999999999996421111 10
Q ss_pred --CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 174 --GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 174 --~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
...+..--+.+++|.++ .|+++|++++ ++++++.+.......+.+.|++++.++.+.++.+.+. ..+++.++.-
T Consensus 261 a~~~~gv~pDi~t~gK~l~-~G~p~gav~~-~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~--~l~~~~~~~g 336 (445)
T PRK08593 261 SISHFNITPDLMSFGKSLA-GGMPMSAIVG-RKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDE--SLLQRSAEKG 336 (445)
T ss_pred HHHhcCCCCCEeeeccccc-CCcccEEEEE-cHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhc--cHHHHHHHHH
Confidence 11111111458899998 8899999998 8999888854333457778899999898888876543 4444444444
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC--------Cch---HHHHHHHHhhCeeeeCCCCCC
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES--------KED---EDCEKLLRAERIMARGGRRFG 320 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~l~~~gI~~~pg~~f~ 320 (360)
...++.+.+..++++.+.-..-.|. ++.+.+ ++. ..+...+.++||.+.+..
T Consensus 337 ~~l~~~L~~l~~~~~~v~~vrG~Gl--------------~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~--- 399 (445)
T PRK08593 337 EYARKRFDQWVSKYNFVGDVRGYGL--------------SIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVA--- 399 (445)
T ss_pred HHHHHHHHHHHhcCCcEEEEeccce--------------EEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccC---
Confidence 4444444443344442221221222 222221 121 456777788999987631
Q ss_pred CCCCeEEEEecC--ChHHHHHHHHHHHHHHhchhc
Q 018172 321 ADAKYARVSMLS--REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 321 ~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~~ 353 (360)
.+.+|++... ++++++++++++.+++.+...
T Consensus 400 --~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~ 432 (445)
T PRK08593 400 --GNVLRFQPPLVITYEQLDTALNTIEQAFTALEA 432 (445)
T ss_pred --CCEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 3578987644 999999999999999976543
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-12 Score=125.49 Aligned_cols=258 Identities=13% Similarity=0.025 Sum_probs=157.1
Q ss_pred CChHHHHHHHHHhhcCCCCCCCceEEEeCC---CCCCcHHHH---HHhCCe----eeeecCC-------cccccc---CC
Q 018172 66 TGSTQLYQAALYALSSPGGPEPISVVSAAP---YYSQYPAET---DYLRSG----LYKWDGD-------ANTFDK---NN 125 (360)
Q Consensus 66 ~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p---~~~~~~~~~---~~~g~~----~~~~~~~-------~~~~~~---~~ 125 (360)
.+++.++..++.+|+++||+ |+..+. .|....... +..+.. +..+..+ .+.+.. ..
T Consensus 107 ~SG~~AN~av~~aL~~pgD~----Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~ 182 (475)
T PLN03226 107 LSGSPANFAVYTALLQPHDR----IMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLF 182 (475)
T ss_pred CchHHHHHHHHHHhCCCCCE----EEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhc
Confidence 66788999999999999998 887442 233222211 111121 1133222 222222 24
Q ss_pred CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcC--C-CCCCccEEEecccccc-CCCCceEEEEe
Q 018172 126 GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPI--T-GAADHDIMLFTLSKCT-GHAGSRIGWAL 200 (360)
Q Consensus 126 ~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~--~-~~~~~~i~~~S~sK~~-~~~G~r~G~~~ 200 (360)
++++|++. .++ +|...+ +.+.++|+++|+++++|++|..+..... . .....+++++|++|++ |+.| |+++
T Consensus 183 ~pklIv~~-~S~-~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G---g~I~ 257 (475)
T PLN03226 183 RPKLIIAG-ASA-YPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG---GMIF 257 (475)
T ss_pred CCeEEEEe-cCc-CCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc---eEEE
Confidence 56776653 343 566655 6778899999999999999985432111 0 0125789999999998 6555 8888
Q ss_pred ecCHHHH-----------HH---HHHHHhh-ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 018172 201 VKDTEVA-----------RK---MTRFIEL-GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS 265 (360)
Q Consensus 201 ~~~~~~~-----------~~---l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (360)
+ +++.. +. +...... ...+++.....++.++++.+.. ...++.++++.++.+++.+.|.+.
T Consensus 258 ~-~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~---~~~~~~~~~~~~na~~L~~~L~~~ 333 (475)
T PLN03226 258 F-RKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMT---PEFKAYQKQVKANAAALANRLMSK 333 (475)
T ss_pred E-chhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhC---cCHHHHHHHHHHHHHHHHHHHHhC
Confidence 7 55433 22 2211111 1223334444444456765543 345677889999999999999886
Q ss_pred CCcccCCCCCcccccccccCCCCCCcccccCC----chHHHHHHHHhhCeeeeCCCCCC----CCCCeEEEEe------c
Q 018172 266 GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK----EDEDCEKLLRAERIMARGGRRFG----ADAKYARVSM------L 331 (360)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gI~~~pg~~f~----~~~~~~R~s~------~ 331 (360)
++.+..+. .....+++++. +...+.+.|.+.||.+..+...+ ..+..+|++. .
T Consensus 334 -G~~l~~~~------------t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g 400 (475)
T PLN03226 334 -GYKLVTGG------------TDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRG 400 (475)
T ss_pred -CCEEEcCC------------CCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCC
Confidence 45543321 01123455552 22778899999999987653221 1345689843 2
Q ss_pred CChHHHHHHHHHHHHHHh
Q 018172 332 SREEIFNIFLERLSAIQG 349 (360)
Q Consensus 332 ~~~e~~~~~~~~l~~~~~ 349 (360)
.++++++++.+.|.+++.
T Consensus 401 ~~~~d~~~ia~~i~~~~~ 418 (475)
T PLN03226 401 LVEKDFEKVAEFLHRAVT 418 (475)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 278999999999999997
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-13 Score=131.99 Aligned_cols=318 Identities=13% Similarity=0.058 Sum_probs=182.1
Q ss_pred hHHHHHHhcCCce-e-eecCCcccccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc
Q 018172 3 FEAFWRKLGDKCT-M-VISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS 80 (360)
Q Consensus 3 ~~~~~~~~~~~~~-~-~~~~~~~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~ 80 (360)
|-+||.+..-+.+ . ++++.+.+ +. +.|. ..+.++.+|+.+|. .+..++++|+|.++..++.+++
T Consensus 167 f~~f~Gen~~r~Dlt~ev~~LddL--l~-~~G~----i~eAe~~AA~~fgA-------d~tyfvvNGTS~~n~av~~a~~ 232 (714)
T PRK15400 167 FYDFFGPNTMKSDISISVSELGSL--LD-HSGP----HKEAEEYIARVFNA-------DRSYMVTNGTSTANKIVGMYSA 232 (714)
T ss_pred HHHHhhhhhhhhhccccccCCCCC--CC-CChH----HHHHHHHHHHHhCC-------CcEEEEeCchHHHHHHHHHHhc
Confidence 3455544322222 2 35555544 23 3444 49999999999995 4589999999999999999999
Q ss_pred CCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCcccc------c-----c---------CCCee---EEEEcCCCC
Q 018172 81 SPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTF------D-----K---------NNGAY---IEVVNSPNN 137 (360)
Q Consensus 81 ~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~------~-----~---------~~~~~---~i~~~~p~N 137 (360)
.+||. |+++..||.+..+.+.+.|++++.+....+.+ . . .++.+ .+++++|+
T Consensus 233 ~~Gd~----VLvdRN~HKSv~haLilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pT- 307 (714)
T PRK15400 233 PAGST----VLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST- 307 (714)
T ss_pred CCCCE----EEeecccHHHHHHHHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCC-
Confidence 99998 99999999999999999999999876442211 1 1 23334 78999995
Q ss_pred CCcccch-HHHHHHhhhcCcEEEEeecccC-----CCCCc---CC-CCC--CccEEEeccccccCCCCceEE-EEeecCH
Q 018172 138 PDGTIRE-AVLAKVNRSAEGKLIHDLAYYW-----PQYTP---IT-GAA--DHDIMLFTLSKCTGHAGSRIG-WALVKDT 204 (360)
Q Consensus 138 PtG~~~~-~~~~~~~~~~~~~li~D~ay~~-----~~~~~---~~-~~~--~~~i~~~S~sK~~~~~G~r~G-~~~~~~~ 204 (360)
.-|.+++ +.+.+.+..++ +++||||+. +.+++ +. +.. +.++++.|.||.++ ++..+ ++.....
T Consensus 308 YdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~--alTQaS~LHvkg~ 383 (714)
T PRK15400 308 YDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGD 383 (714)
T ss_pred CccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhccc--chhHHhHHHHcCC
Confidence 6999998 55666665465 789999983 11111 11 111 33489999999875 44333 3333111
Q ss_pred HHHHHHHHHHhh-ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC------cccCCCCC--
Q 018172 205 EVARKMTRFIEL-GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV------FGLPEYPL-- 275 (360)
Q Consensus 205 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~~~~-- 275 (360)
--.+++...... .+.+++-+....+..+...+.. ..-++..+...++...+++.|.++++ +.+..++.
T Consensus 384 vd~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~---~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~ 460 (714)
T PRK15400 384 VNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKG---NAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHID 460 (714)
T ss_pred CCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcc
Confidence 001233332222 2223332222222222222211 23344445555555666666666643 22222110
Q ss_pred -----------cccccccc---cCCCCCCcccccCCc-------------hHHHHHHHHhhCeeeeCCCCCCCCCCeEEE
Q 018172 276 -----------EYCNFTGK---FTNSHPGFAWLESKE-------------DEDCEKLLRAERIMARGGRRFGADAKYARV 328 (360)
Q Consensus 276 -----------~~~~~~~~---~~~~~~~~~~~~~~~-------------~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~ 328 (360)
.+..|.+. ...-++.=+.+.+++ +..+.+.|+++||.+.-...+.. -+=+
T Consensus 461 ~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~i---Lfl~ 537 (714)
T PRK15400 461 TTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNL---LFLF 537 (714)
T ss_pred cchhcccCccccccCcccccccccccCCceEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecCCCeE---EEEe
Confidence 00000000 000011112222222 15678889999999875332221 2444
Q ss_pred EecCChHHHHHHHHHHHHHHh
Q 018172 329 SMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 329 s~~~~~e~~~~~~~~l~~~~~ 349 (360)
+++.+++++++++++|.++-+
T Consensus 538 s~g~t~~~~~~L~~aL~~f~~ 558 (714)
T PRK15400 538 SIGIDKTKALSLLRALTDFKR 558 (714)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 555599999999999998844
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-12 Score=123.73 Aligned_cols=283 Identities=14% Similarity=0.103 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC------cHHHHHHhCCeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ------YPAETDYLRSGLY 112 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~------~~~~~~~~g~~~~ 112 (360)
..+++.+++++|. ++ .+++++++.++..++.. +.+||+ |++++..|.. +...++..|++++
T Consensus 125 ~~le~~lA~l~ga-------e~-alvv~sg~aAi~l~l~~-l~~Gde----VIvs~~e~v~~ggs~~i~~~~~~~G~~~~ 191 (454)
T TIGR00474 125 SHVEGLLCELTGA-------ED-ALVVNNNAAAVLLALNT-LAKGKE----VIVSRGELVEIGGSFRIPDVMEQSGAKLV 191 (454)
T ss_pred HHHHHHHHHHhCC-------Cc-EEEECCHHHHHHHHHHH-hCCcCE----EEECCChhhhhcchhhHHHHHHHcCCEEE
Confidence 7889999999985 33 45566677888888855 578988 9999876432 2345677899999
Q ss_pred eecCCc----ccccc--CCCeeEEEEcCCCCCC--cc--cch-HHHHHHhhhcCcEEEEeecccC---------CCCCcC
Q 018172 113 KWDGDA----NTFDK--NNGAYIEVVNSPNNPD--GT--IRE-AVLAKVNRSAEGKLIHDLAYYW---------PQYTPI 172 (360)
Q Consensus 113 ~~~~~~----~~~~~--~~~~~~i~~~~p~NPt--G~--~~~-~~~~~~~~~~~~~li~D~ay~~---------~~~~~~ 172 (360)
.++.+. +.+.. +++|++|++.+++||+ |. ..+ +++.++|+++|+++++|.+.+. +..+.+
T Consensus 192 ~v~~~~~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~ 271 (454)
T TIGR00474 192 EVGTTNRTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTV 271 (454)
T ss_pred EeCCCCCCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCccc
Confidence 887532 22222 5789999999999995 64 455 7788889989999999986321 111111
Q ss_pred --CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCch--------h
Q 018172 173 --TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYP--------N 242 (360)
Q Consensus 173 --~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~ 242 (360)
....+.+++++|.+|.++-| ..|++++ ..++++.+++...............+..+.+....+..+ +
T Consensus 272 ~~~~~~GaDiv~fSg~K~LgGp--~~G~i~g-~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~ 348 (454)
T TIGR00474 272 QEVIAAGVDLVTFSGDKLLGGP--QAGIIVG-KKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLR 348 (454)
T ss_pred ccHhHcCCCEEEecCccccCCC--eEEEEEE-CHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHH
Confidence 12457789999999988634 4798988 678887765433222233333333333333322111100 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCc--ccCCCC---CcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeee
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQS--GVF--GLPEYP---LEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMA 313 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~--~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~ 313 (360)
.+....++.+++.+.+.+.|.+. +++ .+.... |+. ++.+...++. -+.++..+ ...+.+.|++....+
T Consensus 349 ~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg-~~p~~~l~~~--~v~~~~~~~~~~~l~~~lr~~~~~i 425 (454)
T TIGR00474 349 MLTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGG-SLPDERLPSY--AVTLTPDGLSAEKLEARLRELPPPI 425 (454)
T ss_pred HhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCC-CCcCCCCCeE--EEEEecCCCCHHHHHHHHhcCCCCE
Confidence 22233345666777777777664 222 111111 111 1111111111 12233222 278888998876333
Q ss_pred eCCCCCCCCCCeEEEEecC-ChHHHHHHHHHH
Q 018172 314 RGGRRFGADAKYARVSMLS-REEIFNIFLERL 344 (360)
Q Consensus 314 ~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l 344 (360)
... ..++.+-+-+-. .++|++.+++++
T Consensus 426 i~r----~~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 426 IGR----IEDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred EEE----EECCEEEEEeCcCCHHHHHHHHHHh
Confidence 221 246677787755 788888888775
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-12 Score=119.07 Aligned_cols=291 Identities=10% Similarity=-0.021 Sum_probs=186.7
Q ss_pred ccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH-HH
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE-TD 105 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~-~~ 105 (360)
|.....+ .+|++.+++++|. + .++.|+++|.++++++...+++||. | +..+|...... +.
T Consensus 74 Yagd~s~-----~~LE~~vAe~lG~-------e-~aV~v~sGTaAl~ll~~l~v~pGd~----V--p~n~~f~Tt~ahI~ 134 (460)
T PRK13237 74 YAGSRNF-----YHLEETVQEYYGF-------K-HVVPTHQGRGAENLLSRIAIKPGQY----V--PGNMYFTTTRYHQE 134 (460)
T ss_pred hcCCCcH-----HHHHHHHHHHHCC-------C-eEEEeCCHHHHHHHHHHhCCCCcCE----E--CCccchHhhHHHHH
Confidence 6655555 8999999999995 4 6889989999999887777889985 4 44444444433 66
Q ss_pred HhCCeeeeec----------------CCcccccc------CCCeeEEEEcCCCCCC-cccch----HHHHHHhhhcCcEE
Q 018172 106 YLRSGLYKWD----------------GDANTFDK------NNGAYIEVVNSPNNPD-GTIRE----AVLAKVNRSAEGKL 158 (360)
Q Consensus 106 ~~g~~~~~~~----------------~~~~~~~~------~~~~~~i~~~~p~NPt-G~~~~----~~~~~~~~~~~~~l 158 (360)
..|+.++.+. +|.+.+.. .+++.++.+.+++|.. |...| +.+.++|+++|+.+
T Consensus 135 ~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~V 214 (460)
T PRK13237 135 LNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKV 214 (460)
T ss_pred hCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEE
Confidence 6787665442 12111111 1245567888888988 56664 56778899999999
Q ss_pred EEeecccCCCC-------CcCCC----------CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc----
Q 018172 159 IHDLAYYWPQY-------TPITG----------AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG---- 217 (360)
Q Consensus 159 i~D~ay~~~~~-------~~~~~----------~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~---- 217 (360)
++|.++..+.. ....+ ....+.+++|++|.++.+- .|++++.++++.+.++...-..
T Consensus 215 i~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~--GG~i~t~D~eL~~~~r~~~~~~eG~~ 292 (460)
T PRK13237 215 FFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNI--GGFLAMNDEELFDEAKELVVVYEGMP 292 (460)
T ss_pred EEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCC--ceEEEECCHHHHHHHHHhccccCCCc
Confidence 99999875421 11111 1245788999999987542 4899998999999998774221
Q ss_pred cc-cCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC
Q 018172 218 SI-GVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES 296 (360)
Q Consensus 218 ~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (360)
++ +.+.-...+++..+....+. ...+......++|.+.|.+. ++.+..|.|+.+.|++... +...+
T Consensus 293 tygg~~grd~~alAvgl~E~~~~------~y~~~ri~~~~~l~~~L~~~-Gvpv~~p~ggH~v~vda~~------~lph~ 359 (460)
T PRK13237 293 SYGGMAGRDMEAMAIGIEESVQY------EYIEHRVGQVRYLGEKLLAA-GVPIVEPVGGHAVFLDARR------FLPHL 359 (460)
T ss_pred CCCChhhhHHHHHHhHHHhhchH------HHHHHHHHHHHHHHHHHHHC-CCceecCCCceEEEEEhHH------hCCCC
Confidence 11 22232344444444422221 33333334557888888887 5667778888766553221 11222
Q ss_pred -----CchHHHHHHHHhhCeeee-CCCC-CCC----------CCCeEEEEecC---ChHHHHHHHHHHHHHHhch
Q 018172 297 -----KEDEDCEKLLRAERIMAR-GGRR-FGA----------DAKYARVSMLS---REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 297 -----~~~~~~~~~l~~~gI~~~-pg~~-f~~----------~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~ 351 (360)
|....+..+-.+.||--. -|+. ++. .-..+|+.+-. +.+.++...+++..+.++.
T Consensus 360 ~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~ 434 (460)
T PRK13237 360 PQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHR 434 (460)
T ss_pred CcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhH
Confidence 333667777788888643 2221 121 12469999855 8899999999999998764
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-12 Score=126.21 Aligned_cols=303 Identities=11% Similarity=0.021 Sum_probs=174.3
Q ss_pred eecCCcccccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCC
Q 018172 17 VISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY 96 (360)
Q Consensus 17 ~~~~~~~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~ 96 (360)
+.++.+.+ . +..|. ..+.++.+|+.+|. ....++++|+|.++..++.+++.+||. |+++..|
T Consensus 183 ev~~LddL--l-~~~G~----i~eAe~~aA~~fgA-------d~tyfvvNGTS~~n~av~~a~~~~Gd~----VLvdRN~ 244 (713)
T PRK15399 183 SVTELGSL--L-DHTGP----HLEAEEYIARTFGA-------EQSYIVTNGTSTSNKIVGMYAAPAGST----LLIDRNC 244 (713)
T ss_pred cccCCCCC--C-CCChH----HHHHHHHHHHHhCC-------CcEEEEeCChHHHHHHHHHHhcCCCCE----EEeeccc
Confidence 35555444 2 33444 48999999999995 458999999999999999999999998 9999999
Q ss_pred CCCcHHHHHHhCCeeeeecCCcccc--------------------ccCC---CeeEEEEcCCCCCCcccch-HHHHHHhh
Q 018172 97 YSQYPAETDYLRSGLYKWDGDANTF--------------------DKNN---GAYIEVVNSPNNPDGTIRE-AVLAKVNR 152 (360)
Q Consensus 97 ~~~~~~~~~~~g~~~~~~~~~~~~~--------------------~~~~---~~~~i~~~~p~NPtG~~~~-~~~~~~~~ 152 (360)
|.+..+.+.+.|++++.+....+.+ ...+ +++++++++|+ .-|.+++ +.+.+.+
T Consensus 245 HKSv~~aLilsga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pT-YdGi~yd~~~I~~~~- 322 (713)
T PRK15399 245 HKSLAHLLMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNST-YDGLLYNTDWIKQTL- 322 (713)
T ss_pred HHHHHHHHHHcCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCC-CCceeeCHHHHHHHh-
Confidence 9999999999999999876442211 1122 33689999996 6999998 5555555
Q ss_pred hcCcEE-EEeecccC-----CCCCc---CCCCCCcc---EEEeccccccCCCCceEE-EEeecCHHHHHHHHHHHhhc-c
Q 018172 153 SAEGKL-IHDLAYYW-----PQYTP---ITGAADHD---IMLFTLSKCTGHAGSRIG-WALVKDTEVARKMTRFIELG-S 218 (360)
Q Consensus 153 ~~~~~l-i~D~ay~~-----~~~~~---~~~~~~~~---i~~~S~sK~~~~~G~r~G-~~~~~~~~~~~~l~~~~~~~-~ 218 (360)
|+.+ ++||||+. +.+++ +....+.+ +++.|.||.++ ++..+ ++.....--.+++....... +
T Consensus 323 --g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~--alTQaS~iHvk~~vd~~~~n~a~~m~~S 398 (713)
T PRK15399 323 --DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLA--AFSQASLIHIKGEYDEETFNEAFMMHTS 398 (713)
T ss_pred --CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhcccc--ccchheeeeecCCCCHHHHHHHHHHHcC
Confidence 4545 69999983 11121 11111223 44999999875 44444 55553211113343333222 2
Q ss_pred ccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC------cccCCCC-------------Ccccc
Q 018172 219 IGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV------FGLPEYP-------------LEYCN 279 (360)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~~~-------------~~~~~ 279 (360)
.+++-+....+..+...+.. ..-++..+...++...+++.+.++.. +.+..++ ..+..
T Consensus 399 TSPsY~LmASLD~a~~~m~~---~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whg 475 (713)
T PRK15399 399 TSPSYPIVASVETAAAMLRG---NPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHG 475 (713)
T ss_pred CCcHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCccccc
Confidence 23332222222222222211 12333444445555555555555432 2222211 00000
Q ss_pred ccc---ccCCCCCCcccccCC-------------chHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHH
Q 018172 280 FTG---KFTNSHPGFAWLESK-------------EDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLER 343 (360)
Q Consensus 280 ~~~---~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~ 343 (360)
|.+ ....-++.=+.+.++ .+..+.+.|+++||.+.-...+.. -+=+|++.+++++++++++
T Consensus 476 f~~~~~~~~~lDP~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~v---L~l~s~g~t~~~~~~L~~a 552 (713)
T PRK15399 476 FKDADADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNL---LFLFSIGIDKTKAMGLLRG 552 (713)
T ss_pred ccccccccccCCCceEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEecCCCeE---EEEeCCCCCHHHHHHHHHH
Confidence 000 000001111222222 116788889999999875332221 3444555599999999999
Q ss_pred HHHHHh
Q 018172 344 LSAIQG 349 (360)
Q Consensus 344 l~~~~~ 349 (360)
|.++-+
T Consensus 553 L~~f~~ 558 (713)
T PRK15399 553 LTEFKR 558 (713)
T ss_pred HHHHHH
Confidence 998854
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-12 Score=123.27 Aligned_cols=259 Identities=13% Similarity=0.103 Sum_probs=156.6
Q ss_pred EEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CC------------eeeeecCCc---------
Q 018172 62 IVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RS------------GLYKWDGDA--------- 118 (360)
Q Consensus 62 i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~--------- 118 (360)
++++++++++...+++.... .|. .+|+.-..+|......+... |. .+..++...
T Consensus 105 ~f~~~sGsEA~e~AlklAr~~tgr---~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (442)
T TIGR00709 105 QFPGPSGADAVEAAIKLAKTYTGR---TNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIG 181 (442)
T ss_pred EEeCCCHHHHHHHHHHHHHHhcCC---CeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCC
Confidence 45568899999999887642 232 24888888888776444432 21 111121110
Q ss_pred ------------c-ccc---c-CCCeeEEEEcCCCCCCccc-ch----HHHHHHhhhcCcEEEEeecccCCCCCc-CC--
Q 018172 119 ------------N-TFD---K-NNGAYIEVVNSPNNPDGTI-RE----AVLAKVNRSAEGKLIHDLAYYWPQYTP-IT-- 173 (360)
Q Consensus 119 ------------~-~~~---~-~~~~~~i~~~~p~NPtG~~-~~----~~~~~~~~~~~~~li~D~ay~~~~~~~-~~-- 173 (360)
+ .+. . ..+..++++....+..|.+ .+ +.+.++|+++|+++|.||++.+..... ..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~ 261 (442)
T TIGR00709 182 GEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAF 261 (442)
T ss_pred chhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHH
Confidence 0 010 0 1345666665555555655 44 467789999999999999998532211 11
Q ss_pred CC--CCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 174 GA--ADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 174 ~~--~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
.. ...++++ ++|.++ .|+++|++++ +++ .+.+.......+++.|++++.++.+.|+.+.+. . ..+..
T Consensus 262 ~~~gv~PDiv~--~gK~l~-~G~Pigav~~-~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~--~----l~~~~ 330 (442)
T TIGR00709 262 EHAGIEPDFVV--MSKAVG-GGLPLAVLLI-APE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDD--N----LAQNA 330 (442)
T ss_pred HHcCCCCcEEE--Eccccc-CCcccEEEEE-chH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhc--C----HHHHH
Confidence 11 1223443 899999 5999999999 666 454432233467889999999999999865432 2 33344
Q ss_pred HHHHHHHHHHHHh----cCCcccCCCCCcccccccccCCCCCCcccccCC--------------c---hHHHHHHHHhhC
Q 018172 252 SERWNMLRQVIRQ----SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------------E---DEDCEKLLRAER 310 (360)
Q Consensus 252 ~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~---~~~~~~~l~~~g 310 (360)
+++.+++.+.|++ ++.+.-+. +.+.++.+.+. + ...+...+.++|
T Consensus 331 ~~~g~~l~~~L~~l~~~~~~v~~vr--------------G~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 396 (442)
T TIGR00709 331 QERGERITSFLDDMIKEHPCIGNVR--------------GRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENG 396 (442)
T ss_pred HHHHHHHHHHHHHHHHhCCCeeeee--------------ccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCC
Confidence 5555555555544 33222111 22223222221 0 145667778899
Q ss_pred eeeeCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhch
Q 018172 311 IMARGGRRFGADAKYARVSML--SREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 311 I~~~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~~ 351 (360)
|.+.+... ..+.+|+... .++++++++++++.+.+.+.
T Consensus 397 vl~~~~~~---~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~ 436 (442)
T TIGR00709 397 LLLETGGR---EGEVFRLLCPITIDQEECEEGISRFKQAVEEA 436 (442)
T ss_pred eEEeecCC---CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99876322 2458888654 39999999999999999764
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-12 Score=116.01 Aligned_cols=276 Identities=17% Similarity=0.135 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH--HHHhC--Ceeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE--TDYLR--SGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~--~~~~g--~~~~~~ 114 (360)
..+++.+++.++ . ..+++++++|+++.+.+...++||+. ||+..-.|-..... ++.++ .+....
T Consensus 38 ~~~e~~~ae~~g-------~-~a~~Fv~sGT~aN~lal~~~~~~~~~----vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~ 105 (342)
T COG2008 38 NALEQRIAELFG-------K-EAALFVPSGTQANQLALAAHCQPGES----VICHETAHIYTDECGAPEFFGGGQKLPIV 105 (342)
T ss_pred HHHHHHHHHHhC-------C-ceEEEecCccHHHHHHHHHhcCCCCe----EEEeccccceecccCcHHHHcCCceeccC
Confidence 788888888888 4 47999999999999999999999998 99998887766532 44443 332222
Q ss_pred c-----CCcccccc----C----CCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCC---CC-CcCC
Q 018172 115 D-----GDANTFDK----N----NGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWP---QY-TPIT 173 (360)
Q Consensus 115 ~-----~~~~~~~~----~----~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~---~~-~~~~ 173 (360)
+ ++++.+.. + ..+.++++.+.+|--|.++| +.+.++|+++++.|..|-+-.+. .. ++..
T Consensus 106 ~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~ 185 (342)
T COG2008 106 PGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALK 185 (342)
T ss_pred CCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHH
Confidence 2 11111111 1 23445555444447899999 24557899999999999875531 11 2222
Q ss_pred -CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHH
Q 018172 174 -GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMS 252 (360)
Q Consensus 174 -~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 252 (360)
-....+.+..++||..+.|+ |.|+..+.++++.++..+...+...+.....++.. +-.+.++ ......+.-.
T Consensus 186 ~~~~~~D~v~~~~tK~g~~~~---gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~-~~~l~~~---~~~~~~~Han 258 (342)
T COG2008 186 TIKSYVDSVSFCLTKGGGAPV---GAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQG-LYALEDD---VWRLAADHAN 258 (342)
T ss_pred HHHhhCCEEEEecccCCccee---eeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHH-HHHHhcc---HHHHHHHHHH
Confidence 24567888999999887665 88888799999999877765444444333333332 2222232 2222233334
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC
Q 018172 253 ERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS 332 (360)
Q Consensus 253 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~ 332 (360)
+...+|.+.|...+++.+..| +.+|.+++.+++. ..+.|+..|+...-|..-+.....+||..+.
T Consensus 259 ~mA~~La~~~~~~~G~~~~~~-------------~~tN~vf~~l~~~--~i~~l~~~~~~~~~~~~~~~~~~~vRfvts~ 323 (342)
T COG2008 259 AMAARLAEGLEAKPGVKLAFP-------------VETNMVFVRLPES--AIEALRLAGALFYRGVLIGAHGEIVRFVTSW 323 (342)
T ss_pred HHHHHHHHhhhhcCCceeccC-------------CcccEEEEECChH--HHHHHHhhchhheeeeeccCCCceEEEEeec
Confidence 445677788887766665443 5667888998864 1144444444433322111111368996544
Q ss_pred --ChHHHHHHHHHHHHHH
Q 018172 333 --REEIFNIFLERLSAIQ 348 (360)
Q Consensus 333 --~~e~~~~~~~~l~~~~ 348 (360)
++|++++++..+++++
T Consensus 324 a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 324 ATSEEDVDELVAAIKALL 341 (342)
T ss_pred cCCHHHHHHHHHHHHHhh
Confidence 8999999999998875
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-12 Score=123.07 Aligned_cols=264 Identities=13% Similarity=0.085 Sum_probs=163.7
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHhCCe-------------eeeecC-Cccc-
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYLRSG-------------LYKWDG-DANT- 120 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~-~~~~- 120 (360)
+.++++++++|++..+++.... .|.. +|+.....|......+-....+ +..++. |.+.
T Consensus 135 ~~v~f~~SGsEA~e~AlklAr~~t~~~gr~---~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~ 211 (442)
T TIGR03372 135 KYSFFCNSGTESVEAALKLAKAYQSPRGKF---TFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAM 211 (442)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHhhcCCc---EEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHH
Confidence 4689999999999999886632 2332 4888887777765433332111 112221 1111
Q ss_pred ---ccc----CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcCC--CCC--CccEEEe
Q 018172 121 ---FDK----NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPIT--GAA--DHDIMLF 183 (360)
Q Consensus 121 ---~~~----~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~~--~~~--~~~i~~~ 183 (360)
++. ..+..+|++......-|...+ +.+.++|+++|+++|.||++.+. ...... ... ..++ .
T Consensus 212 ~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDi--v 289 (442)
T TIGR03372 212 LKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDI--L 289 (442)
T ss_pred HHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCe--e
Confidence 110 134555666554555677765 46778999999999999999642 111111 111 2233 3
Q ss_pred ccccccCCCC-ceEEEEeecCHHHHHHHHH--HHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHH
Q 018172 184 TLSKCTGHAG-SRIGWALVKDTEVARKMTR--FIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQ 260 (360)
Q Consensus 184 S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (360)
+++|.+| .| +.+|.+++ .+++.+.+.. .....+++.|+.+..++.+.|+.+.+. ...++.++.-...++.|.+
T Consensus 290 t~gK~lg-~G~~Pigavv~-~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~--~l~~~~~~~G~~l~~~L~~ 365 (442)
T TIGR03372 290 CLAKALG-GGVMPIGATIA-TEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEK--NLPAQAAIKGDFLLDGFQQ 365 (442)
T ss_pred eehhhhc-CCcccceEEEe-cHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHH
Confidence 5899998 78 68999998 7888888732 233467778999999999989876543 4444444444444444444
Q ss_pred HHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC--ChH
Q 018172 261 VIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSMLS--REE 335 (360)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~--~~e 335 (360)
...+++.. +. .+++.+.++.+.+.+. ..+.+.|.++||++.+.. ...+.+||.... +++
T Consensus 366 l~~~~~~~-i~------------~vRG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~---~~~~~lr~~Ppl~~t~~ 429 (442)
T TIGR03372 366 LAAEYPDL-II------------EARGKGLLMAIEFRDNEIGYAFAKELFQQNILVAGTL---NNAKSIRIEPPLTITIE 429 (442)
T ss_pred HHHhCCCc-eE------------EEecceEEEEEEeCChHHHHHHHHHHHHCCcEEeecC---CCCCEEEEECCcccCHH
Confidence 33334311 00 1234455666666543 567777888999987531 124689987643 999
Q ss_pred HHHHHHHHHHHHH
Q 018172 336 IFNIFLERLSAIQ 348 (360)
Q Consensus 336 ~~~~~~~~l~~~~ 348 (360)
+++++++++.+.+
T Consensus 430 ~id~~~~~l~~~~ 442 (442)
T TIGR03372 430 QCALVIKAAKDAL 442 (442)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998864
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-12 Score=122.43 Aligned_cols=262 Identities=14% Similarity=0.066 Sum_probs=157.8
Q ss_pred cEEE-cCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CC------------eeeeecCC--------
Q 018172 61 HIVI-GTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RS------------GLYKWDGD-------- 117 (360)
Q Consensus 61 ~i~~-t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~-------- 117 (360)
.+.+ ++++++++..+++.... +|.. +|+.-..+|......+-.. |- .+..+|.+
T Consensus 104 ~~~f~~~sGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 180 (425)
T PRK09264 104 KVQFTGPTGTNAVEAALKLARKVTGRT---NIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVD 180 (425)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHhcCCC---eEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchh
Confidence 4656 57999999999887642 2322 4887777777765432222 10 12223221
Q ss_pred -cccccc-------C-CCeeEEEEcCCCCCCcccc-h----HHHHHHhhhcCcEEEEeecccCCCC-CcC-C---CCCCc
Q 018172 118 -ANTFDK-------N-NGAYIEVVNSPNNPDGTIR-E----AVLAKVNRSAEGKLIHDLAYYWPQY-TPI-T---GAADH 178 (360)
Q Consensus 118 -~~~~~~-------~-~~~~~i~~~~p~NPtG~~~-~----~~~~~~~~~~~~~li~D~ay~~~~~-~~~-~---~~~~~ 178 (360)
.+.++. . ++..+|++.......|.+. + +.+.++|++||+++|+||++.+... ... . .....
T Consensus 181 ~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~P 260 (425)
T PRK09264 181 TLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITP 260 (425)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCC
Confidence 111111 1 2345666655555677654 3 4677899999999999999974211 000 0 11122
Q ss_pred cEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhc-ccCCCchhHHHHHHHHHHHHHHH
Q 018172 179 DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILG-IVSDDYPNFFEYGRRLMSERWNM 257 (360)
Q Consensus 179 ~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~ 257 (360)
+ +.+++|.++..|+++|++++ ++++ +.+.......+++.|+++..++.++++ .+.+ ++..+.++++.++
T Consensus 261 D--i~t~~K~l~~~G~pigav~~-~~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~------~~l~~~~~~~g~~ 330 (425)
T PRK09264 261 D--IVTLSKSISGYGLPMALVLI-KPEL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWSD------DAFEKEVKAKGEL 330 (425)
T ss_pred C--EEEeccccCCCccceEEEEE-chhh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHH
Confidence 3 34778999944999999999 6665 344332234566778888877767773 2222 1344445555555
Q ss_pred HHHHHHhc----CCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe
Q 018172 258 LRQVIRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSM 330 (360)
Q Consensus 258 l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~ 330 (360)
+.+.|+++ +.+ .. .+++.+.++++.+++. ..+...+.++||.+.+...+ ...+||+.
T Consensus 331 l~~~l~~l~~~~~~~-~~------------~vrg~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~~~~~~---~~~lr~~p 394 (425)
T PRK09264 331 VRERLEEIAAKYPGL-GA------------EVRGRGMMQGIDFGDGELAGKIAAEAFENGLIIETSGPE---DEVVKLLP 394 (425)
T ss_pred HHHHHHHHHHhCCCc-ee------------cceecccEEEEEecChHHHHHHHHHHHHCCCEEeccCCC---CCEEEEeC
Confidence 55555443 211 11 1123445678877654 56778888999999875333 35788876
Q ss_pred c--CChHHHHHHHHHHHHHHhch
Q 018172 331 L--SREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 331 ~--~~~e~~~~~~~~l~~~~~~~ 351 (360)
. .+++++++++++|.+++.+.
T Consensus 395 ~l~~t~~ei~~~~~~l~~~l~~~ 417 (425)
T PRK09264 395 PLTIDEEELEEGLDILEEAVAEV 417 (425)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 4 48999999999999998764
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=121.46 Aligned_cols=280 Identities=10% Similarity=0.013 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHhhcCCCCCC-CCc-EEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc--HHHHHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSD-GRH-IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY--PAETDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~-~~~-i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~--~~~~~~~g~~~~~~ 114 (360)
.+.++.+.++++. + ..+ +++..|+|.++..+...|+.+|++ +++......+- ...++.+|...+..
T Consensus 55 ~~~~~~L~~l~~~------p~~y~v~~l~Gsgt~~~ea~~~nl~~~~~~----~l~~~~G~fg~r~~~~a~~~g~~~~~~ 124 (365)
T PLN02452 55 QKAEADLRELLDI------PDNYEVLFLQGGASTQFAAIPLNLCKPGDK----ADFVVTGSWSKKAAKEAKKYCKTNVIA 124 (365)
T ss_pred HHHHHHHHHHhCC------CCCceEEEEeCccHHHHHHHHHhcCCCCCe----EEEEECCHHHHHHHHHHHHhCCCcEEE
Confidence 6666667777664 2 224 455699999999999999988887 66555444332 45677777644433
Q ss_pred c---------CCccccccCCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecc
Q 018172 115 D---------GDANTFDKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTL 185 (360)
Q Consensus 115 ~---------~~~~~~~~~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~ 185 (360)
. .+.+.+..+++.+.|.+++-.-.||+.+.+. .+++ ++++|+|.+...++.+...+..+. ...|.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~hnETstGv~~~~~-~~i~---~~~lvVDa~Ss~g~~pidv~~~~v--~~~sa 198 (365)
T PLN02452 125 SGKDEKYTKIPSVSEWELTPDAKFVHICANETIHGVEFKDY-PDVG---NVPLVADMSSNFLSKPVDVSKYGV--IYAGA 198 (365)
T ss_pred ecCCCCCCCCCChHHcCCCCCCcEEEECCCCCCCcEecCcc-cccC---CCeEEEECCccccCcccCHHHcCE--EEEec
Confidence 1 1223344455667777766555899975531 1222 489999999887665555555554 33699
Q ss_pred ccccCCCCceEEEEeecCHHHHHHHHHH-------H-----hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHH
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARKMTRF-------I-----ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~l~~~-------~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
.|.+|++| +|+++. .+++++.+... . .....++|....+++.++|+.+.+. .-++.+.++.++
T Consensus 199 qK~lGP~G--l~~v~v-r~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~--gGl~~~~~r~~~ 273 (365)
T PLN02452 199 QKNVGPSG--VTIVII-RKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQ--GGLKAMEKRNIR 273 (365)
T ss_pred ccccCCCC--eEEEEE-cHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHc--cCHHHHHHHHHH
Confidence 99999998 788888 67776554221 0 1112356677777888888876532 368999999999
Q ss_pred HHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe
Q 018172 254 RWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSM 330 (360)
Q Consensus 254 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~ 330 (360)
+.+++++.|++.+++.. .+.. ...++.. .+.+.+++. +.+.+.++++|+...+|+.-- . .+|+|+
T Consensus 274 ~a~~l~~~l~~~~G~y~-~~~~-------~~~rs~~-~vsF~~~~~~~~~~f~~~~~~~g~~~~~G~r~~--g-g~R~s~ 341 (365)
T PLN02452 274 KADLLYDAIDESNGFYV-CPVE-------KSVRSLM-NVPFTLGGSELEAEFVKEAAKAGMVQLKGHRSV--G-GMRASI 341 (365)
T ss_pred HHHHHHHHHHhCCCccc-CCCC-------hHHhCCe-EEEEEcCCchhHHHHHHHHHHCCCcccCCcccc--C-ceEEEC
Confidence 99999999999765511 1110 0001111 234444442 788999999999999987542 2 399998
Q ss_pred cC--ChHHHHHHHHHHHHHHhch
Q 018172 331 LS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 331 ~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
-. +.|+++++++.++++.++.
T Consensus 342 yna~~~~~v~~L~~~m~~f~~~~ 364 (365)
T PLN02452 342 YNAMPLAGVEKLVAFMKDFQAKH 364 (365)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc
Confidence 55 9999999999999987654
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-12 Score=121.66 Aligned_cols=267 Identities=13% Similarity=0.070 Sum_probs=163.8
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHh-CCe------------eeeecCCc----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYL-RSG------------LYKWDGDA---- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~~---- 118 (360)
+.+++++++++++..+++.... .|...+.+|+.-.-+|......+-.. |.. +..++.+.
T Consensus 113 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 192 (460)
T PRK06541 113 NRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRA 192 (460)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccc
Confidence 4899999999999998886642 12111224777777776665433222 211 11121110
Q ss_pred ---------------ccccc-----CCCeeEEEEcCC-CCCCcccch-----HHHHHHhhhcCcEEEEeecccC-CCCCc
Q 018172 119 ---------------NTFDK-----NNGAYIEVVNSP-NNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYW-PQYTP 171 (360)
Q Consensus 119 ---------------~~~~~-----~~~~~~i~~~~p-~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~-~~~~~ 171 (360)
+.++. .++..+.++..| +++.|.+.+ +.+.++|+++|+++|+||++.+ +....
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~ 272 (460)
T PRK06541 193 PELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE 272 (460)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch
Confidence 01110 123445555555 789998865 3677899999999999999953 22222
Q ss_pred CC--CCC--CccEEEeccccccCCCCc-eEEEEeecCHHHHHHHHHHH----hhccccCChHHHHHHHHHhcccCCCchh
Q 018172 172 IT--GAA--DHDIMLFTLSKCTGHAGS-RIGWALVKDTEVARKMTRFI----ELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 172 ~~--~~~--~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
.. ... ..+++ +++|.++ .|+ ++|++++ .+++++.+.... ...+++.|+++..++.+.++.+.+.
T Consensus 273 ~~a~~~~gv~PDiv--t~gK~l~-~G~~pigav~~-~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~--- 345 (460)
T PRK06541 273 MFGCERFGYVPDII--TCAKGIT-SGYSPLGAMIA-SDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFERE--- 345 (460)
T ss_pred hhhhhhcCCCCCEE--Eeccccc-CCccceeEEEE-cHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhc---
Confidence 11 111 22333 6899999 887 9999999 788888875321 2246678889988888888755432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC----------c----h---HHHHHH
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK----------E----D---EDCEKL 305 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~----~---~~~~~~ 305 (360)
...+.++++.+++.+.|+++....+.. .+.+.+.++.+.+. + . ..+...
T Consensus 346 ---~~~~~~~~~g~~l~~~L~~l~~~~~v~-----------~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (460)
T PRK06541 346 ---GLLDHVRDNEPAFRATLEKLLDLPIVG-----------DVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPA 411 (460)
T ss_pred ---cHHHHHHHHHHHHHHHHHHhhcCCCeE-----------EEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHH
Confidence 345667777777777777662111100 01122222222221 0 0 245567
Q ss_pred HHhhCeeeeCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhc
Q 018172 306 LRAERIMARGGRRFGADAKYARVSML--SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 306 l~~~gI~~~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~ 350 (360)
|.++||.+.+.. . ..+.+||+.. .++++++++++++.+++.+
T Consensus 412 l~~~Gi~~~~~~-~--g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~ 455 (460)
T PRK06541 412 LFEAGLYCRADD-R--GDPVVQLAPPLISGQEEFDEIEQILRSVLTE 455 (460)
T ss_pred HHhCCeEEEecC-C--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 778999998721 1 2468999876 4999999999999999865
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.3e-12 Score=120.34 Aligned_cols=268 Identities=13% Similarity=0.102 Sum_probs=166.0
Q ss_pred CcEEEcCChHHHHHHHHHhhcCC-CCCCCceEEEeCCCCCCcHHHHHHh-CCe------------eeeecC-Ccccccc-
Q 018172 60 RHIVIGTGSTQLYQAALYALSSP-GGPEPISVVSAAPYYSQYPAETDYL-RSG------------LYKWDG-DANTFDK- 123 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~~-gd~~~~~vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~-~~~~~~~- 123 (360)
+.+++++++++++..+++....- |.+.+.+|+....+|......+-.. |-. +..++. |.+.+..
T Consensus 142 ~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 221 (459)
T PRK11522 142 KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTA 221 (459)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHH
Confidence 47999999999999998876321 1000124787777777765443322 211 111111 1111111
Q ss_pred -------CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcC-C-CCC--CccEEEeccc
Q 018172 124 -------NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPI-T-GAA--DHDIMLFTLS 186 (360)
Q Consensus 124 -------~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~-~-~~~--~~~i~~~S~s 186 (360)
..+..++++.....-.|.+.+ +.+.++|+++|+++|.||++.+. ..... . ... ..++ .+++
T Consensus 222 l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDi--vt~g 299 (459)
T PRK11522 222 LSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDI--LCLA 299 (459)
T ss_pred HHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCE--EEec
Confidence 123456666655556787765 46778999999999999999642 11111 0 111 2233 3889
Q ss_pred cccCCCC-ceEEEEeecCHHHHHHHHH--HHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 018172 187 KCTGHAG-SRIGWALVKDTEVARKMTR--FIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIR 263 (360)
Q Consensus 187 K~~~~~G-~r~G~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 263 (360)
|.+| .| +.+|.+++ .+++.+.+.. .....+++.|+.+..++.+.|+.+.+. .. .++.+++-+++.+.|+
T Consensus 300 K~lg-gG~~Pigav~~-~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~--~l----~~~~~~~g~~l~~~L~ 371 (459)
T PRK11522 300 KALG-GGVMPIGATIA-TEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQ--NL----PAQAEQKGDYLLDGFR 371 (459)
T ss_pred hhhh-CCCccceeEEE-cHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcc--hH----HHHHHHHHHHHHHHHH
Confidence 9998 77 68999998 7888877632 233456778999999999999876543 33 3444455555555555
Q ss_pred hc----CCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC--Ch
Q 018172 264 QS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSMLS--RE 334 (360)
Q Consensus 264 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~--~~ 334 (360)
++ +.. +. .+++.+.++.+.+.+. ..+...|.++||.+.+.. ...+.+||.... ++
T Consensus 372 ~l~~~~~~~-i~------------~VrG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~---~~~~~lr~~Ppl~~t~ 435 (459)
T PRK11522 372 QLAREYPDL-VQ------------EARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTL---NNAKTIRIEPPLTLTI 435 (459)
T ss_pred HHHHhCCCc-ee------------eEEeceeEEEEEecCchHHHHHHHHHHHCCeEEEecC---CCCCEEEEECCccCCH
Confidence 44 211 11 1123444556666432 556777888999997632 124689997644 99
Q ss_pred HHHHHHHHHHHHHHhchhc
Q 018172 335 EIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 335 e~~~~~~~~l~~~~~~~~~ 353 (360)
++++++++++.+++.+..+
T Consensus 436 ~~id~~l~~l~~~l~~~~~ 454 (459)
T PRK11522 436 EQCEQVLKAARKALAAMRV 454 (459)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999976543
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-13 Score=122.18 Aligned_cols=283 Identities=15% Similarity=0.078 Sum_probs=192.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
+.++++.+|+|+|. ++.+++..| -......+..|+++|.- |+..+-.|.++..-+++.|+..+-+.-+
T Consensus 184 hkelE~l~A~f~g~-------e~a~vF~mG-f~TNs~~~p~l~~~gsL----IiSDelNHaSi~~GaRLSgAtiRVfkHN 251 (519)
T KOG1357|consen 184 HKELEELVARFLGV-------EDAIVFSMG-FATNSMNIPSLLGKGSL----IISDELNHASLITGARLSGATTRVFRHN 251 (519)
T ss_pred HHHHHHHHHHhcCC-------cceEEEecc-ccccccCcceeecCCcc----eeeccccchheeccccccCceEEEEecC
Confidence 48899999999995 568998888 66667789999999987 8888999999999999999998877644
Q ss_pred -cccccc---------C-----CCeeE-EEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC----C-----c
Q 018172 118 -ANTFDK---------N-----NGAYI-EVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY----T-----P 171 (360)
Q Consensus 118 -~~~~~~---------~-----~~~~~-i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~----~-----~ 171 (360)
..+++. . +-.|+ |+.-.-...-|.+.. +++..+++++..+++.||+|+.+.. . .
T Consensus 252 dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~ 331 (519)
T KOG1357|consen 252 DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYF 331 (519)
T ss_pred CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeecc
Confidence 223322 1 22233 344444445666654 6777888999999999999984321 1 1
Q ss_pred CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc---cccCChHHHHHHHHHhcccCC-CchhHHHHH
Q 018172 172 ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG---SIGVSKESQLRAAKILGIVSD-DYPNFFEYG 247 (360)
Q Consensus 172 ~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 247 (360)
..+..+.+|.+++|+|+||..| ||+.+ +.++++.++...... +...++..|..... +..+.+ ......++.
T Consensus 332 g~d~~dvDImMGtftKSfga~G---Gyiag-sk~lid~lrt~s~~~~yat~~sppvaqq~~ss-l~~i~G~dgt~~g~~k 406 (519)
T KOG1357|consen 332 GVDPEDVDIMMGTFTKSFGAAG---GYIAG-SKELIDYLRTPSPSALYATSLSPPVAQQILTS-VKHIMGEDGTNRGRQK 406 (519)
T ss_pred CCCchhheeecceehhhccccc---ceecC-cHHHHhhhccCCCceeecccCChHHHHHHHHH-HHhhcCCCcccHHHHH
Confidence 2345677899999999999777 99888 899999997654332 22344455544444 444432 223778888
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCC--CCCC
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFG--ADAK 324 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~--~~~~ 324 (360)
.+++++++.+++..|+..+.+.+...+ + +..+ +.+-.+.- .+..+.|.+++|.++-+.+.. .-..
T Consensus 407 ~~~l~~ns~yfr~~l~~~gfivyG~~d-S---------pVvp--lll~~~~k~~~f~r~~l~~nigvVvvgfPatpl~e~ 474 (519)
T KOG1357|consen 407 IERLAENSRYFRWELQKMGFIVYGNND-S---------PVVP--LLLYGPAKIVAFSREMLERNIGVVVVGFPATPLLES 474 (519)
T ss_pred HHHHHhhhHHHHHhhhcCcEEEecCCC-C---------Ccce--eeecCcccccHHHHHHHhcCceEEEEeCCCchHHHh
Confidence 899999999999999998654433221 1 1111 22222222 555555556666655433222 1345
Q ss_pred eEEEEecC--ChHHHHHHHHHHHHHHh
Q 018172 325 YARVSMLS--REEIFNIFLERLSAIQG 349 (360)
Q Consensus 325 ~~R~s~~~--~~e~~~~~~~~l~~~~~ 349 (360)
.+|++.+. +.|+++++++.+.+.=+
T Consensus 475 r~R~c~Sa~ht~e~ld~~l~~i~~~g~ 501 (519)
T KOG1357|consen 475 RARFCLSASHTKEDLDRALEVIDRVGD 501 (519)
T ss_pred HHHhhhcccccHHHHHHHHHHHhhhch
Confidence 67998866 89999999999887653
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.4e-12 Score=108.68 Aligned_cols=273 Identities=14% Similarity=0.137 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH---HHHHhCCeeeeec
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA---ETDYLRSGLYKWD 115 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~---~~~~~g~~~~~~~ 115 (360)
..|++.+|+.+| ++..+++++|+..-+-.+...+-++|.. +|+.+-+|--.+. +..+.|+.+.++.
T Consensus 59 ~rLE~~vA~l~G-------KEAgLFv~SGTmgNllaIm~Hc~~rg~e----ii~gd~~HI~~~E~gg~s~l~gv~~~tv~ 127 (384)
T KOG1368|consen 59 NRLEQRVAELFG-------KEAGLFVPSGTMGNLLAIMVHCHQRGSE----IIVGDRAHIHRYEQGGISQLAGVHVRTVK 127 (384)
T ss_pred HHHHHHHHHHhC-------ccceeeecccccccHHHHHHHhcCCCce----EEeccchheeehhccChhhhccceeEeee
Confidence 899999999999 5667888887555544444455567887 9999887765543 3555688888877
Q ss_pred CCccccc------c----------CCCeeEEEEcCCCCCCc-ccch----HHHHHHhhhcCcEEEEeecccCCC----CC
Q 018172 116 GDANTFD------K----------NNGAYIEVVNSPNNPDG-TIRE----AVLAKVNRSAEGKLIHDLAYYWPQ----YT 170 (360)
Q Consensus 116 ~~~~~~~------~----------~~~~~~i~~~~p~NPtG-~~~~----~~~~~~~~~~~~~li~D~ay~~~~----~~ 170 (360)
...++.. . -+.|++|++.|-+|.+| .++| +.+..+|+++|+.+..|-+-.+.. -.
T Consensus 128 ~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV 207 (384)
T KOG1368|consen 128 NENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGV 207 (384)
T ss_pred eCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCC
Confidence 5544321 1 25799999999988888 7777 345678999999999998865411 11
Q ss_pred cCCC-CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHH
Q 018172 171 PITG-AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRR 249 (360)
Q Consensus 171 ~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (360)
++.. ...-+-+--.+||.+|.| +|-++..+.++++..+.++...+.+.-..+..++++.+. +.+++ ..+....+
T Consensus 208 ~vk~i~~~fDSVsiCLSKglgAP---VGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLva-l~~~~-~~L~~dHk 282 (384)
T KOG1368|consen 208 PVKKICSAFDSVSICLSKGLGAP---VGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVA-LDENV-PLLRADHK 282 (384)
T ss_pred CHHHHHHhhhhhhhhhhccCCCC---cccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-hhcch-HHHHHHHH
Confidence 1110 111222344789998855 587666699999999888876666655555555555333 22221 22222222
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeCCCCCCCCCCe
Q 018172 250 LMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARGGRRFGADAKY 325 (360)
Q Consensus 250 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~pg~~f~~~~~~ 325 (360)
+...+.+.+...+.+.+-.|. ...|++.+.+... +.+.+.+.++||.+.+|..+ .
T Consensus 283 ----~A~~lAe~~~~~~~i~v~v~a------------~etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~~s~-----r 341 (384)
T KOG1368|consen 283 ----RAKELAEYINTPEEIRVEVPA------------VETNIVNMVLCQARLTAEELCKFLEKNGILLMGGASR-----R 341 (384)
T ss_pred ----HHHHHHHHhccccceeeecch------------hhcceeeeecccccCCHHHHHHHHHHCCeEEeecccc-----c
Confidence 233344445555444433221 3445666544332 77888889999999987533 4
Q ss_pred EEEEecC--ChHHHHHHHHHHHHHH
Q 018172 326 ARVSMLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 326 ~R~s~~~--~~e~~~~~~~~l~~~~ 348 (360)
+|+.+.. +.++++..+..+.+.+
T Consensus 342 ~Rivlh~Qvt~~~ve~~~~~~~k~~ 366 (384)
T KOG1368|consen 342 IRIVLHHQVTDEDVEYVKSVLSKKF 366 (384)
T ss_pred eEEEEEEecCHHHHHHHHHHHHHHH
Confidence 7998855 8999999999994433
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-11 Score=118.16 Aligned_cols=273 Identities=11% Similarity=0.068 Sum_probs=165.2
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHh-CCe------------eeeecCCc----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYL-RSG------------LYKWDGDA---- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~~---- 118 (360)
+.+++++++++++..+++.... .|.+.+.+|+.-..+|......+-.. |.. +..++.+.
T Consensus 106 ~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (451)
T PRK07678 106 YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRM 185 (451)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccc
Confidence 3799999999999998887632 12111234887777777765433322 111 11111100
Q ss_pred -----------------cc-cc-c-CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcC
Q 018172 119 -----------------NT-FD-K-NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPI 172 (360)
Q Consensus 119 -----------------~~-~~-~-~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~ 172 (360)
+. +. . .++.-+|++.-...--|.+.+ +.+.++|+++|+++|.||++.+. .....
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 265 (451)
T PRK07678 186 PGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKA 265 (451)
T ss_pred cccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchh
Confidence 00 10 0 234556666544444677755 46778999999999999999643 22111
Q ss_pred C--CCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHH------HHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 173 T--GAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTR------FIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 173 ~--~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
. ...+-.-=+-+++|.++ .| +.+|.+++ .+++++.+.. +....+++.|+.+..++.+.|+.+.+. ..
T Consensus 266 ~~~~~~gv~PDivt~gK~lg-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~--~~ 341 (451)
T PRK07678 266 FGFMNYGVKPDIITMAKGIT-SAYLPLSATAV-KKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENE--NL 341 (451)
T ss_pred HHHHhcCCCCCEEEeecccc-cCCcceeEEEE-cHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhC--CH
Confidence 1 11121111447789998 67 69999998 7899888753 123567889999999999999877553 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC---------c-h--HHHHHHHHhhCe
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK---------E-D--EDCEKLLRAERI 311 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~--~~~~~~l~~~gI 311 (360)
.++.++.-...++.+.+.+.+++.+.-.. +.+.++.+.+. + . ..+...+.++||
T Consensus 342 ~~~~~~~g~~l~~~l~~~~~~~~~v~~vr--------------g~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv 407 (451)
T PRK07678 342 IERSAQLGELLLEQLKEELGEHPLVGDIR--------------GKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGL 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEE--------------eeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCc
Confidence 55555544555555555555554322111 22222222221 1 1 456777888999
Q ss_pred eeeCCCCCC-CCCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 312 MARGGRRFG-ADAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 312 ~~~pg~~f~-~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
.+.+....- ...+.+||+... ++++++++++++.+++.+
T Consensus 408 ~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~ 449 (451)
T PRK07678 408 IIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALER 449 (451)
T ss_pred EEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 997632211 113679998644 999999999999999864
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-11 Score=114.33 Aligned_cols=264 Identities=13% Similarity=0.052 Sum_probs=168.0
Q ss_pred cEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH---------HHhCCeee--eecCCcc-------ccc
Q 018172 61 HIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET---------DYLRSGLY--KWDGDAN-------TFD 122 (360)
Q Consensus 61 ~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~---------~~~g~~~~--~~~~~~~-------~~~ 122 (360)
+|-.- +++.++..++.+|++|||+ |+..+..|....... ...|..+. +++.|.+ .+.
T Consensus 217 NVQp~-SGs~AN~aV~~ALl~PGD~----IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~le 291 (586)
T PLN02271 217 NVQPY-SCTSANFAVYTGLLLPGDR----IMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLE 291 (586)
T ss_pred ceeec-cHHHHHHHHHHHhcCCCCE----EEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHH
Confidence 55555 5588889999999999998 999888777665432 33454444 3334322 222
Q ss_pred c---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcC--C-CCCCccEEEeccccccCCCCce
Q 018172 123 K---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPI--T-GAADHDIMLFTLSKCTGHAGSR 195 (360)
Q Consensus 123 ~---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~--~-~~~~~~i~~~S~sK~~~~~G~r 195 (360)
. ..++|+|++..-.|| ..++ +.+.++|+++|+++++|.+|..+-...- + .....+++.+|.+|++. |=|
T Consensus 292 k~a~~~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLr--GPr 367 (586)
T PLN02271 292 EKALDFRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLR--GPR 367 (586)
T ss_pred HHhhhcCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCC--CCC
Confidence 2 568999999887887 3344 6778889999999999999985422111 0 12347899999999882 334
Q ss_pred EEEEeecCH-------------------HHHHHHHHHHhhccccCChHHHH-HHHHHhcccCCCchhHHHHHHHHHHHHH
Q 018172 196 IGWALVKDT-------------------EVARKMTRFIELGSIGVSKESQL-RAAKILGIVSDDYPNFFEYGRRLMSERW 255 (360)
Q Consensus 196 ~G~~~~~~~-------------------~~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (360)
.|.+...+. ++.+.+.+......-+.+..... +.+.+++.... .......+++.++.
T Consensus 368 GG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~---~efk~Ya~QVv~NA 444 (586)
T PLN02271 368 GGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVAT---PEYKAYMQQVKKNA 444 (586)
T ss_pred ceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHH
Confidence 488777321 35555554433222222222222 23335554332 34477888888899
Q ss_pred HHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeee----CCCCCCCCCCeEE
Q 018172 256 NMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMAR----GGRRFGADAKYAR 327 (360)
Q Consensus 256 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~----pg~~f~~~~~~~R 327 (360)
+.|.+.|.+.+ +.+.. .|. ..-.+++++.. +..+.+.|.+.||.+. |+..-...++.+|
T Consensus 445 kaLA~~L~~~G-~~vv~-ggT-----------dnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiR 511 (586)
T PLN02271 445 QALASALLRRK-CRLVT-GGT-----------DNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVR 511 (586)
T ss_pred HHHHHHHHHCC-CeEee-CCC-----------CcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCccc
Confidence 99999998884 33332 111 11146677643 3889999999999874 3331112466899
Q ss_pred EEecC------ChHHHHHHHHHHHHHHh
Q 018172 328 VSMLS------REEIFNIFLERLSAIQG 349 (360)
Q Consensus 328 ~s~~~------~~e~~~~~~~~l~~~~~ 349 (360)
|+... .++++++..+.|.+++.
T Consensus 512 iGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 512 IGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred ccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 97521 67888888888888876
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-11 Score=115.73 Aligned_cols=323 Identities=12% Similarity=0.094 Sum_probs=188.6
Q ss_pred HHHHHHhcCCceeeecCCcccccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCC
Q 018172 4 EAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPG 83 (360)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~g 83 (360)
.+|+-+..-+.++...... +...-++.|. ..+..+.+|+.+|+ ++..++++|+|.++..++.+++.+|
T Consensus 43 ~~f~Gen~fr~D~~~~~~~-Ld~Ll~p~G~----i~eAqe~aA~~fgA-------d~tyFvvNGTS~ank~vi~a~~~~G 110 (557)
T COG1982 43 YDFFGENLFRADVSEADGE-LDSLLDPEGP----IKEAQELAARVFGA-------DHTYFVVNGTSTANKAVINAVLTPG 110 (557)
T ss_pred HHHhhhhhhhcccccccCc-cccccCCCcc----HHHHHHHHHHHhCC-------CceEEEECCccHHHHHHHHhhcCCC
Confidence 4455554444444333321 2222334444 59999999999995 5689999999999999999999999
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCccc-ccc---------------CCCe-eEEEEcCCCCCCcccch-H
Q 018172 84 GPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANT-FDK---------------NNGA-YIEVVNSPNNPDGTIRE-A 145 (360)
Q Consensus 84 d~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~-~~~---------------~~~~-~~i~~~~p~NPtG~~~~-~ 145 (360)
|. ||++.+||.+....+.+.|+.++.+....+. +.. .+.. |++++++|+ --|+.++ +
T Consensus 111 D~----VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpT-YdGv~~n~~ 185 (557)
T COG1982 111 DK----VLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPT-YDGVCYNLR 185 (557)
T ss_pred CE----EEecCCccHHHHHHHHHcCCceEEecCCCCccccccCCCCHHHHHHHHHhChhhheeEEEecCc-cceEeecHH
Confidence 99 9999999999999999999999987654332 211 2455 899999997 4899988 4
Q ss_pred HHHHHhhhcCcEEEEeecccC--C---CCCcCCCCCCccEEEeccccccCCCCceEEEEeecC--HHHHHHHHHHHhhcc
Q 018172 146 VLAKVNRSAEGKLIHDLAYYW--P---QYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKD--TEVARKMTRFIELGS 218 (360)
Q Consensus 146 ~~~~~~~~~~~~li~D~ay~~--~---~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~--~~~~~~l~~~~~~~~ 218 (360)
.+.+...+.++|+.+|+++.. . ..+........++++.|.+|.++ ..-....+...+ .-..+++........
T Consensus 186 ~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~-alSQaS~iHv~~~~~~~~~r~nea~~~h~ 264 (557)
T COG1982 186 KIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFVTQSTHKLLA-ALSQASMIHVKDGRAVNHERFNEALMMHQ 264 (557)
T ss_pred HHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceEEEechhhhhh-hhhhhHHHhhCCCccCCHHHHHHHHHHHc
Confidence 555555459999999999873 1 11222224678899999999876 333334555533 111233333322222
Q ss_pred ccCChHHHHHHHHHhccc-CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCc-----ccccc---cccCCCCC
Q 018172 219 IGVSKESQLRAAKILGIV-SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLE-----YCNFT---GKFTNSHP 289 (360)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~ 289 (360)
.+.+.-...|...+-+.. ...-+...++..+..-+.|+.+.+....++++.+..+... +..|. +....-++
T Consensus 265 STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP 344 (557)
T COG1982 265 STSPSYPLMASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDP 344 (557)
T ss_pred cCCchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccc
Confidence 222222222222221110 1111233444455666677777777777776665544421 11110 00111111
Q ss_pred CcccccCCc-h---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 290 GFAWLESKE-D---EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 290 ~~~~~~~~~-~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
.=+.+..++ + ..+.+.|+++||...-.. +..+=+-++.........++.|.++.+
T Consensus 345 ~Klti~tp~~Gipg~~v~~~L~e~gii~e~~~-----d~~~lll~~~~~gk~~~lv~~L~~f~r 403 (557)
T COG1982 345 TKLTITTPEFGIPGAIVAKYLREHGIIPEETG-----DYSNLLLFSPGIGKWQTLVDRLLEFKR 403 (557)
T ss_pred cEEEEecCCCCCcHHHHHHHHHHcCCeeeecC-----CceeeEEeeeccchHHHHHHHHHHHHH
Confidence 112233322 1 888999999999865322 222223332222455555666666555
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-11 Score=119.16 Aligned_cols=267 Identities=10% Similarity=0.027 Sum_probs=158.8
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHH-HHHHhCCe------------eeeecCCc----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPA-ETDYLRSG------------LYKWDGDA---- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~-~~~~~g~~------------~~~~~~~~---- 118 (360)
+.+++++++++++..+++.... .|.+.+.+|+.-+-+|..... .+...|.. +..++.+.
T Consensus 152 ~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~ 231 (504)
T PLN02760 152 GKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRF 231 (504)
T ss_pred CEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCccccc
Confidence 4689999999999999887731 121111247777777776643 22222321 11111100
Q ss_pred ---------------cccc-----cC-CCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccC-CCCCc
Q 018172 119 ---------------NTFD-----KN-NGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYW-PQYTP 171 (360)
Q Consensus 119 ---------------~~~~-----~~-~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~-~~~~~ 171 (360)
+.++ .. .+..+|++.....-.|.+.+ +.+.++|+++|+++|.||++.+ +....
T Consensus 232 ~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~ 311 (504)
T PLN02760 232 HLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT 311 (504)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccch
Confidence 0011 11 23445565544555677755 4678899999999999999953 22222
Q ss_pred CC--CCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHH-------HhhccccCChHHHHHHHHHhcccCCCch
Q 018172 172 IT--GAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRF-------IELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 172 ~~--~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
.. ...+-.-=+.+++|.+| .| +.+|.+++ .+++++.+... ....+++.|+.+..++.+.|+.+.+.
T Consensus 312 ~~a~e~~gv~PDivtlgK~lg-gG~~PigAv~~-~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~-- 387 (504)
T PLN02760 312 MFGCDKYNIKPDLVSLAKALS-SAYMPIGAVLV-SPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKER-- 387 (504)
T ss_pred hhHHHhcCCCCcEEEeccccc-CCccccceEee-cHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 11 11111122678899998 66 48999888 78998887531 23457788999999999999876543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--------------hHHHHHHHH
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--------------DEDCEKLLR 307 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~ 307 (360)
.. .++.+++-+++.+.|+++....++. .+++.+.++.+.+.+ ...+...+.
T Consensus 388 ~l----~~~~~~~g~~l~~~L~~l~~~~~v~-----------~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~ 452 (504)
T PLN02760 388 NI----PEHVNKIAPRFQDGIKAFSGSPIIG-----------EIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECK 452 (504)
T ss_pred CH----HHHHHHHHHHHHHHHHHHhcCCCee-----------eEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHH
Confidence 33 3344444444444444331111100 112233333333311 134566778
Q ss_pred hhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHHhch
Q 018172 308 AERIMARGGRRFGADAKYARVSM--LSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 308 ~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~~ 351 (360)
++||.+.+. .+.+||+. ..++++++++++++.+++.+.
T Consensus 453 ~~Gvl~~~~------g~~lrl~Ppl~it~eeid~~~~~l~~al~~~ 492 (504)
T PLN02760 453 KRGMLVRVA------GDNIMMSPPLIITPEEVDELISIYGKALKAT 492 (504)
T ss_pred hCCcEEEec------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999762 24689985 469999999999999998754
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-11 Score=113.61 Aligned_cols=268 Identities=13% Similarity=0.070 Sum_probs=173.0
Q ss_pred CCcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHH-HHHhCCee-------------eeecCC--cc--
Q 018172 59 GRHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAE-TDYLRSGL-------------YKWDGD--AN-- 119 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~-~~~~g~~~-------------~~~~~~--~~-- 119 (360)
.+.+++++++++++.++++.... .|.. .||...-.|...... +.+.|-.. ..+|.+ ..
T Consensus 117 ~~~~~f~~sGaeA~E~AiKiAr~~Tgr~---~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p 193 (447)
T COG0160 117 LKKVFFGNSGAEAVEAAIKIARAYTGRP---GVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCP 193 (447)
T ss_pred CCeEEecCCcHHHHHHHHHHHHHHhCCC---cEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCc
Confidence 35799999999999999887632 1221 277777666655444 33333222 222211 00
Q ss_pred -ccc-----c----------------CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCC-CCc
Q 018172 120 -TFD-----K----------------NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQ-YTP 171 (360)
Q Consensus 120 -~~~-----~----------------~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~-~~~ 171 (360)
+.. . ..+..++++..-..-.|++.+ +.+.++|+++|+++|.||++.+.. ...
T Consensus 194 ~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~ 273 (447)
T COG0160 194 FGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGK 273 (447)
T ss_pred ccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc
Confidence 000 0 125666777777788888865 467889999999999999998532 222
Q ss_pred CC--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHH
Q 018172 172 IT--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRR 249 (360)
Q Consensus 172 ~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (360)
+. ...+-.-=+-+++|.+| .|+.+|.++. .+++.+ ........+++.|+.+..++.+.|+.+.+. ..+++..+
T Consensus 274 ~fa~E~~gv~PDivt~aK~ig-~G~Pl~avv~-r~ei~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e--~L~~~a~~ 348 (447)
T COG0160 274 MFAFEHFGVEPDIVTLAKSLG-GGLPLSAVVG-RAEIMD-WPPGGHGGTFGGNPVACAAALAVLDVIEEE--NLLERAAE 348 (447)
T ss_pred chhhhhcCCCCCEEEeccccc-CCCceeEEec-cHHhcc-cCCcccCCCCCcCHHHHHHHHHHHHHHHHc--cHHHHHHH
Confidence 22 12222223557789999 6999999998 788888 444444466999999999999999866543 45555554
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--------ch---HHHHHHHHhhCeeeeCCCC
Q 018172 250 LMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------ED---EDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 250 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~l~~~gI~~~pg~~ 318 (360)
.=...++.|.+.-.+++. +. -+++.+.++.+.+. +. +.+.+.+.++|+.+..+..
T Consensus 349 ~G~~l~~~L~~l~~~~~~--Ig------------dVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~ 414 (447)
T COG0160 349 LGEYLRDRLEELQEKHPL--IG------------DVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGP 414 (447)
T ss_pred HHHHHHHHHHHHHhhcCc--ee------------cccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCC
Confidence 444444444444445542 11 12344445544442 22 6678888899998876443
Q ss_pred CCCCCCeEEEEe--cCChHHHHHHHHHHHHHHhch
Q 018172 319 FGADAKYARVSM--LSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 319 f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~~ 351 (360)
+ .+.+||.. ..++|+++.+++.|.+.+.+.
T Consensus 415 ~---~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 415 H---GNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred C---CcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 3 45899964 449999999999999998753
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=121.18 Aligned_cols=252 Identities=12% Similarity=0.072 Sum_probs=161.8
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CC-CCCCceEEEeCCCCCCcHHHHHHh--------CCe-----eeeecC-Ccccccc
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PG-GPEPISVVSAAPYYSQYPAETDYL--------RSG-----LYKWDG-DANTFDK 123 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~g-d~~~~~vl~~~p~~~~~~~~~~~~--------g~~-----~~~~~~-~~~~~~~ 123 (360)
+.+++++++++++..+++.... .| ++ |+..+.+|......+-.. +.. +..++. |.+.++.
T Consensus 82 ~~v~~~~SGseA~e~Alklar~~~gr~~----Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~ 157 (364)
T PRK04013 82 EYVYMGNSGTEAVEAALKFARLYTGRKE----IIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKE 157 (364)
T ss_pred CEEEEeCchHHHHHHHHHHHHHHhCCCE----EEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHHHHH
Confidence 4799999999999999887742 34 34 888888888765433321 111 112221 1122221
Q ss_pred --CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCcCCC--CCCccEEEeccccccCCCCc
Q 018172 124 --NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTPITG--AADHDIMLFTLSKCTGHAGS 194 (360)
Q Consensus 124 --~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~~~~--~~~~~i~~~S~sK~~~~~G~ 194 (360)
++++.+|++.......|...+ +.+.++|+++|+++|.||++.+........ ..+-.-=+-+++|.++ .|+
T Consensus 158 ~i~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~~gK~lg-gG~ 236 (364)
T PRK04013 158 AITKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTMGKGIG-NGV 236 (364)
T ss_pred HhcCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEEeccccc-CCc
Confidence 346788887766666666543 467788999999999999988432211111 1111111456689999 789
Q ss_pred eEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q 018172 195 RIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYP 274 (360)
Q Consensus 195 r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 274 (360)
.+|.++. ..++. ......+++.|+.+..++.+.++.+.+. ..+++.++.+ +.+.. +. +
T Consensus 237 P~~a~~~-~~~~~----~~~~~~T~~gnp~~~aaa~a~l~~i~~~--~l~~~~~~~l--------~~l~~-~~--v---- 294 (364)
T PRK04013 237 PVSLTLT-NFDVE----RGKHGSTFGGNPLACKAVAVTLRILRRE--RLVEKAGEKF--------IEIKG-ER--V---- 294 (364)
T ss_pred eeEEEEe-ccccc----CCCcCCCCCcCHHHHHHHHHHHHHHHhc--cHHHHHHHHH--------HHhcc-Cc--c----
Confidence 9999988 55542 2234467889999999999999877654 5555554432 11211 11 1
Q ss_pred CcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhch
Q 018172 275 LEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGADAKYARVSML--SREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~~ 351 (360)
..+++.+.++.+.+.+. ..+.+.+.++|+.+.+. ..+.+||... .+++++++++++|.+.+.+.
T Consensus 295 --------~~vRG~Gl~~gve~~~~~~~i~~~~~~~Gll~~~~-----g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~ 361 (364)
T PRK04013 295 --------VTTRGRGLMIGIVLKKPVGKYVEELQNRGYLVHTA-----GQRVIRLLPPLIISKDTMEEAKSAIEGVINDI 361 (364)
T ss_pred --------eeeeeCcEEEEEEeCCcHHHHHHHHHhCCcEEeeC-----CCCEEEEeCCcccCHHHHHHHHHHHHHHHHHH
Confidence 12345556667777554 56777788899998762 2368999753 39999999999999999753
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-11 Score=125.79 Aligned_cols=269 Identities=13% Similarity=0.079 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCC--CCCCceEEEeCCCCCCcHHHH----HHhCCee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPG--GPEPISVVSAAPYYSQYPAET----DYLRSGL 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~g--d~~~~~vl~~~p~~~~~~~~~----~~~g~~~ 111 (360)
-++++.++++.|. +..++.+..++|++.+.++.++ ..++ ++ |++++-.|+.....+ +..|+++
T Consensus 124 ~~~Qt~la~LtG~------~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~----vlv~~~~hP~~~~v~~t~a~~~G~ev 193 (954)
T PRK05367 124 LNFQTMVADLTGL------EIANASLLDEATAAAEAMALAKRVSKSKSNR----FFVDDDVHPQTLDVLRTRAEPLGIEV 193 (954)
T ss_pred HHHHHHHHHHHCC------ChhhccccccHHHHHHHHHHhhhhccCCCCE----EEEcCccCHHHHHHHHHHHHhCCCEE
Confidence 4566778888887 6678999999999999888877 3443 55 999999999887654 5579999
Q ss_pred eeecCCccccccCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccc--
Q 018172 112 YKWDGDANTFDKNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKC-- 188 (360)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~-- 188 (360)
+.++.+.+ +. ++++.++++.+| |-+|.+.+ +.+.++++++|+++++|...........++..+.+++++|..|.
T Consensus 194 ~~~~~~~d-~~-~~~~~~vlvq~p-~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~ 270 (954)
T PRK05367 194 VVGDAAKA-LD-HDDVFGVLLQYP-GTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGV 270 (954)
T ss_pred EEecCccC-CC-cccEEEEEEecC-CCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCC
Confidence 99886542 22 345666777777 46999988 66777777799999999865433444456888999999999996
Q ss_pred ---cCCCCceEEEEeecCHHHHHHHH-HHHh-----------------------hccccCChHHHHHHHHHh-----ccc
Q 018172 189 ---TGHAGSRIGWALVKDTEVARKMT-RFIE-----------------------LGSIGVSKESQLRAAKIL-----GIV 236 (360)
Q Consensus 189 ---~~~~G~r~G~~~~~~~~~~~~l~-~~~~-----------------------~~~~~~~~~~~~~~~~~l-----~~~ 236 (360)
||-|| .|++.+ .+++.+.+. +... ....+.|-.+..++.+++ ..+
T Consensus 271 P~g~GGP~--aGflav-r~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~ 347 (954)
T PRK05367 271 PMGFGGPH--AAYFAV-RDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYH 347 (954)
T ss_pred CCCCCCCC--EEEEEE-CHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 55465 899988 677776662 1110 000011111111111111 111
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-chHHHHHHHHhhCeeeeC
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-EDEDCEKLLRAERIMARG 315 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~~p 315 (360)
. ..-+.++.++...+..++.+.|+.. ++.+..+. + | .-+.++++ +..++.+.|.++||.++.
T Consensus 348 -g--~~Gl~~Ia~~~~~la~~l~~~L~~~-G~~~~~~~--~--f---------~~~~~~~~~~~~~i~~~l~~~gi~~~~ 410 (954)
T PRK05367 348 -G--PEGLKAIARRVHRLAAILAAGLRAL-GLEVVHDS--F--F---------DTLTVEVGGDAAAVLARALAAGINLRR 410 (954)
T ss_pred -h--hhhHHHHHHHHHHHHHHHHHHHHhc-CcccCCCC--C--C---------CeEEEeCCCCHHHHHHHHHHCCceecc
Confidence 2 1667888888999999999999774 44443221 1 0 02334443 348888999999998843
Q ss_pred CCCCCCCCCeEEEEecC--ChHHHHHHHHHHH
Q 018172 316 GRRFGADAKYARVSMLS--REEIFNIFLERLS 345 (360)
Q Consensus 316 g~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~ 345 (360)
. .++.+|+|+.- ++++++++++++.
T Consensus 411 ---~--~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 411 ---V--DDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred ---c--cCCEEEEEecccCCHHHHHHHHHHHc
Confidence 2 24579999855 8999999999997
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.4e-11 Score=110.78 Aligned_cols=253 Identities=16% Similarity=0.128 Sum_probs=155.1
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH-----H-----HHhCCeeeeecCCccccccC----------
Q 018172 65 GTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE-----T-----DYLRSGLYKWDGDANTFDKN---------- 124 (360)
Q Consensus 65 t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~-----~-----~~~g~~~~~~~~~~~~~~~~---------- 124 (360)
..+++.+...++.+|++|||+ |+..++.+.....- . .....+.+.+++|.+....|
T Consensus 92 p~SGs~An~av~~aLl~pGD~----Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~ 167 (399)
T PF00464_consen 92 PHSGSQANLAVYMALLKPGDT----IMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKE 167 (399)
T ss_dssp -SSHHHHHHHHHHHHT-TT-E----EEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHhhcCc----EEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhh
Confidence 356788999999999999998 88887776655321 1 23456777777775443332
Q ss_pred CCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccC-----CC-CCcCCCCCCccEEEeccccccCCCCceEEE
Q 018172 125 NGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYW-----PQ-YTPITGAADHDIMLFTLSKCTGHAGSRIGW 198 (360)
Q Consensus 125 ~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~-----~~-~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~ 198 (360)
.++|+|++..-+.|-=.-+ +.++++|++.|.+++.|.+|.. +. ..|+ .. .+++.+|.+|+| +|=|.|.
T Consensus 168 ~kPklIi~G~S~y~~~~d~-~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~--~~-ADvvt~sThKtl--~GPrggi 241 (399)
T PF00464_consen 168 HKPKLIICGASSYPRPIDF-KRFREIADEVGAYLMADISHIAGLIAGGLFPNPF--PY-ADVVTGSTHKTL--RGPRGGI 241 (399)
T ss_dssp H--SEEEEE-SSTSS---H-HHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GC--CT-SSEEEEESSGGG---SSS-EE
T ss_pred cCCCEEEECchhccCccCH-HHHHHHHHhcCcEEEecccccccceehheecCcc--cc-ceEEEeeccccc--cccCceE
Confidence 4889999876554332222 6778899999999999999972 22 2333 22 689999999998 4667799
Q ss_pred Eeec-------------CHHHHHHHHHHHhhccccCChHHHHHHHH-HhcccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 018172 199 ALVK-------------DTEVARKMTRFIELGSIGVSKESQLRAAK-ILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQ 264 (360)
Q Consensus 199 ~~~~-------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (360)
|.+. ++++.+.+.+.......+.+.....++.+ ++..... ....+..+++.++.+.|.+.|.+
T Consensus 242 I~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~---~~fk~Ya~qVv~NAk~La~~L~~ 318 (399)
T PF00464_consen 242 ILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALS---PEFKEYAKQVVKNAKALAEALQE 318 (399)
T ss_dssp EEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccC---HHHHHHHHHHHHHHHHHHHHHhh
Confidence 9984 38999999887655544544454444443 4543322 56678888899999999999999
Q ss_pred cCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeee----CCCCCCCCCCeEEEEecC----
Q 018172 265 SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMAR----GGRRFGADAKYARVSMLS---- 332 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~----pg~~f~~~~~~~R~s~~~---- 332 (360)
.+ +.+.. .+ ...-.+|+++.. +..+.+.|.+.||.+. |+..-...+..+||+...
T Consensus 319 ~G-~~v~~-gg-----------Td~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~r 385 (399)
T PF00464_consen 319 RG-FKVVT-GG-----------TDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRR 385 (399)
T ss_dssp TT--EEGG-GS------------SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHT
T ss_pred CC-cEEEE-CC-----------CCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhC
Confidence 85 34331 11 111146778743 2778999999999985 333111135689998622
Q ss_pred --ChHHHHHHHHH
Q 018172 333 --REEIFNIFLER 343 (360)
Q Consensus 333 --~~e~~~~~~~~ 343 (360)
.+++|++..+.
T Consensus 386 G~~e~dm~~iA~~ 398 (399)
T PF00464_consen 386 GMKEEDMKEIAEL 398 (399)
T ss_dssp T--HHHHHHHHHH
T ss_pred CCCHHHHHHHHhh
Confidence 56777665543
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-10 Score=101.36 Aligned_cols=288 Identities=14% Similarity=0.097 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEe-CCCCCC-cHHHHHHhCCeeeeecC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSA-APYYSQ-YPAETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~-~p~~~~-~~~~~~~~g~~~~~~~~ 116 (360)
.++++-+...++. ..+.-.++...++.+...++..++.|||. |++- .-.|.- ..+.++.+|+++..++.
T Consensus 53 ~~v~egikyVFkT-----~n~~tf~isgsGh~g~E~al~N~lePgd~----vLv~~~G~wg~ra~D~~~r~ga~V~~v~~ 123 (385)
T KOG2862|consen 53 DEVLEGIKYVFKT-----ANAQTFVISGSGHSGWEAALVNLLEPGDN----VLVVSTGTWGQRAADCARRYGAEVDVVEA 123 (385)
T ss_pred HHHHHHHHHHhcc-----CCCceEEEecCCcchHHHHHHhhcCCCCe----EEEEEechHHHHHHHHHHhhCceeeEEec
Confidence 4555555554442 13335667777799999999999999998 6655 455553 35778889999999987
Q ss_pred Ccccccc---------CCCeeEEEEcCCCCCCcccch--HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecc
Q 018172 117 DANTFDK---------NNGAYIEVVNSPNNPDGTIRE--AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTL 185 (360)
Q Consensus 117 ~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~--~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~ 185 (360)
|...-.. ..+++++++++-..-||+..+ +...++|++|+.++++|.+-+-+..+...+.++.++.....
T Consensus 124 ~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgS 203 (385)
T KOG2862|consen 124 DIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGS 203 (385)
T ss_pred CcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecc
Confidence 7532211 357899999988888999987 66778999999999999998876667777889999888888
Q ss_pred ccccCC-CCceEEEEeecCHHHHHHHHHHHh--------------hc---------cccCChHHHHHHHHHhcccCCCch
Q 018172 186 SKCTGH-AGSRIGWALVKDTEVARKMTRFIE--------------LG---------SIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 186 sK~~~~-~G~r~G~~~~~~~~~~~~l~~~~~--------------~~---------~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
.|+++. +| ++-+.. ++...++++..+. ++ ..+++....+.+-++|+.+.+
T Consensus 204 QKaL~aP~G--Lsiisf-S~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~e--- 277 (385)
T KOG2862|consen 204 QKALGAPAG--LSIISF-SDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAE--- 277 (385)
T ss_pred hhhcCCCCC--cceeec-CHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHH---
Confidence 899974 45 444555 7777777765442 11 113445555666666665543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhh-CeeeeCCC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAE-RIMARGGR 317 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~-gI~~~pg~ 317 (360)
+-++++.++.++..++++..|.+++..-....+. .....--.+.++. ..++...+..+ ++.+-.|-
T Consensus 278 eGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~----------~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~ggl 347 (385)
T KOG2862|consen 278 EGLENSWRRHREMSKWLKLSLEALGLQLFVVDEE----------LRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGL 347 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccceecChh----------hccCcceeeecCCCCCHHHHHHHHHHhcCEEecccc
Confidence 8899999999999999999999985322221110 0111111233332 25555555555 66554432
Q ss_pred CCCCCCCeEEEEecC---ChHHHHHHHHHHHHHHhchh
Q 018172 318 RFGADAKYARVSMLS---REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 318 ~f~~~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~~ 352 (360)
.- ..+.++||.+.. +-|.++..++.|...+.+.+
T Consensus 348 g~-~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~~~ 384 (385)
T KOG2862|consen 348 GP-TVGKVFRIGLLGCNANVEYIDNVVELLKLALQRKK 384 (385)
T ss_pred CC-CcccEEEEEEeeccCCcHHHHHHHHHHHHHHhhcc
Confidence 22 246799998733 78999999999999988764
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-11 Score=115.07 Aligned_cols=265 Identities=11% Similarity=0.017 Sum_probs=160.9
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CC-------------eeeeecCCc------
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RS-------------GLYKWDGDA------ 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~------ 118 (360)
+.+.+++++++++..+++.... .|.. +|+.-..+|......+..+ |. .+..++...
T Consensus 114 ~~v~f~~SGsEA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 190 (457)
T PRK05639 114 PKVLFGLSGSDAVDMAIKVSKFSTRRP---WILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPW 190 (457)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhcCCC---eEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccc
Confidence 4799999999999999887642 2322 4887777777765433322 21 011222110
Q ss_pred --------cc--------cc--------cCCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCC
Q 018172 119 --------NT--------FD--------KNNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 119 --------~~--------~~--------~~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
+. ++ ...+..+|++.-.....|.+.+ +.+.++|+++|+++|.||++.+...
T Consensus 191 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~Gr 270 (457)
T PRK05639 191 GINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGR 270 (457)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCc
Confidence 00 10 0234556666555555677654 4677899999999999999884211
Q ss_pred Cc-C-C-C--CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHH
Q 018172 170 TP-I-T-G--AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFF 244 (360)
Q Consensus 170 ~~-~-~-~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (360)
.. . . . ....++++ ++|.++ .|+.+|.+++ .+++++.. ......+++.|+.+..++.+.++.+.+. ..+
T Consensus 271 tG~~~a~~~~gv~PDiv~--~gK~l~-gG~pi~av~~-~~~i~~~~-~~~~~~T~~g~p~~~aaa~a~l~~l~~~--~l~ 343 (457)
T PRK05639 271 TGKWFASEWFEVKPDLII--FGKGVA-SGMGLSGVIG-RKELMDLT-SGSALLTPAANPVISAAAEATLEIIEEE--NLL 343 (457)
T ss_pred CchHHHHHhcCCCCCEEE--echhhc-CCCcceeEEe-hHHHHhhc-CCCcccCCCcCHHHHHHHHHHHHHHHHc--cHH
Confidence 11 1 0 1 11234444 799998 7899999998 78888732 2112356678888888888888866543 444
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC------Cch---HHHHHHHHhhCeeeeC
Q 018172 245 EYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES------KED---EDCEKLLRAERIMARG 315 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~l~~~gI~~~p 315 (360)
++.++.-...++.|.+...+++.+.-. ++.+.++.+.+ ++. ..+.+.+.++|+.+.+
T Consensus 344 ~~~~~~g~~l~~~L~~l~~~~~~~~~V--------------rG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~ 409 (457)
T PRK05639 344 KNALKVGEFIKKRLLEMKESFEVIGDV--------------RGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPS 409 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEee--------------ccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEee
Confidence 555544334444443333344322211 12222333332 121 4567777889999976
Q ss_pred CCCCCCCCCeEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 316 GRRFGADAKYARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 316 g~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
. +...+.+||.... ++++++++++++.+.+.+.
T Consensus 410 ~---g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~ 444 (457)
T PRK05639 410 Y---GMFGNVIRITPPLVITKEIAEKGLEIMERAIKDA 444 (457)
T ss_pred c---CCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence 3 2224689997643 9999999999999998764
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-11 Score=115.77 Aligned_cols=267 Identities=11% Similarity=-0.006 Sum_probs=161.4
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHH-hCC------------eeeeecCCc----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDY-LRS------------GLYKWDGDA---- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~-~g~------------~~~~~~~~~---- 118 (360)
+.+++++++++++..+++...+ .|.+.+.+|+.-..+|......+-. .|- .+..++.+.
T Consensus 115 ~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 194 (453)
T PRK06943 115 GHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGA 194 (453)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCcccc
Confidence 4799999999999999887631 1211123488888777776532222 211 111121110
Q ss_pred --------------cccc----c-CCCeeEEEEcC-CCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcC
Q 018172 119 --------------NTFD----K-NNGAYIEVVNS-PNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPI 172 (360)
Q Consensus 119 --------------~~~~----~-~~~~~~i~~~~-p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~ 172 (360)
+.++ . .++..+|++.- ...-.|.+.+ +.++++|+++|+++|.||++.+. .....
T Consensus 195 ~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~ 274 (453)
T PRK06943 195 RPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTF 274 (453)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcch
Confidence 1111 1 13455566654 2566777654 46788999999999999999753 22111
Q ss_pred C--CCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHH------HhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 173 T--GAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRF------IELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 173 ~--~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
. ...+-.-=+-+++|.++ .| +.+|.+++ .+++.+.+... ....+++.|+++..++.+.|+.+.+. ..
T Consensus 275 fa~~~~gv~PDivt~gKgl~-gG~~Pi~av~~-~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~--~l 350 (453)
T PRK06943 275 FACEQAGVWPDFLCLSKGIS-GGYLPLSLVLS-RDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAED--DV 350 (453)
T ss_pred hHHHhCCCCCCeEeeehhhc-cCcccceEEEE-cHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhc--CH
Confidence 1 11121112344589998 78 58999998 78888877531 23457788999999999999877553 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC---c-----hHHHHHHHHhhCeeeeC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK---E-----DEDCEKLLRAERIMARG 315 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~l~~~gI~~~p 315 (360)
+++.++.=...++.+.+. .+++.+. .+++.+.++.+.+. + ...+...+.++||.+.+
T Consensus 351 ~~~~~~~G~~l~~~L~~l-~~~~~v~--------------~vrG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~ 415 (453)
T PRK06943 351 LARNARKSARLRAALAPL-AAHPQVR--------------HLRQRGTIFAFDVALDGDAARTFSRRFFEAALERELLLRP 415 (453)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCCEE--------------eEeccccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEe
Confidence 444444433333333322 2233221 11233334444442 1 14566778899999876
Q ss_pred CCCCCCCCCeEEEE--ecCChHHHHHHHHHHHHHHhch
Q 018172 316 GRRFGADAKYARVS--MLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 316 g~~f~~~~~~~R~s--~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
. .+.+||+ +..++++++++++++.+.+.+.
T Consensus 416 ~------g~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 416 I------GTTVYLMPPYVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred c------CCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 2 2368998 5569999999999999999764
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-11 Score=109.74 Aligned_cols=279 Identities=14% Similarity=0.170 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC--CCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeec-
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS--PGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWD- 115 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~--~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~- 115 (360)
.+|+..+|++++ ++..+++++ +-=+....+..|.+ ||=. ++..+-.|.+....++..+++-..+.
T Consensus 219 v~LE~eLA~LHq-------K~aALlFsS-CfVANDstLftLak~lpgce----i~SD~gNHASMI~GIrns~v~K~IFrH 286 (570)
T KOG1360|consen 219 VRLEAELADLHQ-------KEAALLFSS-CFVANDSTLFTLAKKLPGCE----IFSDEGNHASMIQGIRNSRVPKHIFRH 286 (570)
T ss_pred hhHHHHHHHHhc-------Ccceeeeee-eeeccchHHHHHHHHCCCcE----EeccccchHHHHHHhhhcCCcceeecc
Confidence 677888888877 343444443 44444555555522 3443 55566777777788888777654443
Q ss_pred CCcccccc------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCc----CCC----CCCccE
Q 018172 116 GDANTFDK------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTP----ITG----AADHDI 180 (360)
Q Consensus 116 ~~~~~~~~------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~----~~~----~~~~~i 180 (360)
.|.+.++. ...+|+|-..+.+..+|.+.+ +++..+++++|.+-.+||+|+-+-+.+ +.+ ....+|
T Consensus 287 ND~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDi 366 (570)
T KOG1360|consen 287 NDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDI 366 (570)
T ss_pred CCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhh
Confidence 34444433 246789999999999999988 778888888999999999998432222 211 233478
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc--cccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG--SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
+.+++.|+||.-| |||.+ ...+++.++.+.... +-+.++.....|.++++.+.. ++-...|..-+++..++
T Consensus 367 IsGTLgKafGcVG---GYIAa-t~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~---~eg~~lR~~hqrnv~~~ 439 (570)
T KOG1360|consen 367 ISGTLGKAFGCVG---GYIAA-TRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKS---EEGRVLRRQHQRNVKYV 439 (570)
T ss_pred cccchhhhccccc---ceehh-hhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhh---hhhHHHHHHHHHHHHHH
Confidence 8999999999888 99988 899999998876432 335666666677777765543 45566777778888899
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEecC
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARGGRRFGA--DAKYARVSMLS 332 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~~ 332 (360)
.+.|.+++...+..|. . .+-+.+.+. +.+..++.+++|++..-.+... +..-+|+..+.
T Consensus 440 kq~l~~~GiPVi~~pS-H--------------IiPv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP 504 (570)
T KOG1360|consen 440 KQLLMELGIPVIPNPS-H--------------IIPVRVGDAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTP 504 (570)
T ss_pred HHHHHHcCCcccCCCc-c--------------eeeeeccCHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCC
Confidence 9999998654444332 1 244555454 5567788888999986443322 45578887766
Q ss_pred --ChHHHHHHHHHHHHHHhch
Q 018172 333 --REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 333 --~~e~~~~~~~~l~~~~~~~ 351 (360)
+++.++.+++++.++..+.
T Consensus 505 ~HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 505 HHTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred CCCHHHHHHHHHHHHHHHHHc
Confidence 8999999999999988654
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.6e-11 Score=112.85 Aligned_cols=265 Identities=11% Similarity=0.024 Sum_probs=160.9
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHh-CC-------------eeeeecCCc---
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYL-RS-------------GLYKWDGDA--- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~--- 118 (360)
+.+++++++++++..+++.... .|.+.+.+|+.-..+|......+-.. +. ....++...
T Consensus 101 ~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 180 (422)
T PRK05630 101 DHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRG 180 (422)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccC
Confidence 5899999999999998886532 12222235888777777654333221 21 111121110
Q ss_pred ---ccc-------cc--CCCeeEEEEcC-CCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCC-cCC--C--C
Q 018172 119 ---NTF-------DK--NNGAYIEVVNS-PNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYT-PIT--G--A 175 (360)
Q Consensus 119 ---~~~-------~~--~~~~~~i~~~~-p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~-~~~--~--~ 175 (360)
+.. +. ..+..+|++.- ...-.|...+ +.+.++|+++|+++|.||++.+.... ... . .
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~g 260 (422)
T PRK05630 181 SSPQEISEYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAG 260 (422)
T ss_pred CChHHHHHHHHHHHHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcC
Confidence 000 00 13455565554 2556677654 46778999999999999998742211 111 1 1
Q ss_pred CCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHH------HhhccccCChHHHHHHHHHhcccCCCchhHHHHHH
Q 018172 176 ADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRF------IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGR 248 (360)
Q Consensus 176 ~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (360)
-.-+|+ +++|.++ .| ..+|++++ ++++.+.+... ....+++.|+.+..++.+.++.+.+. ...
T Consensus 261 v~PDi~--t~gK~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~--~~~---- 330 (422)
T PRK05630 261 VTPDIM--CVGKALT-GGFMSFAATLC-TDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETG--MWR---- 330 (422)
T ss_pred CCCCee--eeechhh-cCccccceeec-cHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhC--cHH----
Confidence 122333 7899986 56 47899998 88888887531 22457789999999999988876543 333
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCCCCCCCCCe
Q 018172 249 RLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGGRRFGADAKY 325 (360)
Q Consensus 249 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~~f~~~~~~ 325 (360)
+.++++-+++.+.|+.+...... ..+++.+.++.+.+.+ ...+.+.+.++||.+.+. .+.
T Consensus 331 ~~~~~~g~~l~~~L~~l~~~~~v-----------~~vRg~Gl~~~ie~~~~~~~~~~~~~~~~~Gl~~~~~------g~~ 393 (422)
T PRK05630 331 KQVKRIEAELIAGLSPLAHLPGV-----------ADVRVLGAIGVVEMEQPVDMEEATQAAVDHGVWLRPF------GRL 393 (422)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCe-----------eeeeccccEEEEEECCcccHHHHHHHHHHCCeEEEec------CCE
Confidence 34444444455544432110000 0123444555555543 256777888999999762 257
Q ss_pred EEEEe--cCChHHHHHHHHHHHHHHhch
Q 018172 326 ARVSM--LSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 326 ~R~s~--~~~~e~~~~~~~~l~~~~~~~ 351 (360)
+||.. ..++++++++++++.+++..+
T Consensus 394 l~~~PpL~it~~~i~~~~~~l~~al~~~ 421 (422)
T PRK05630 394 VYVMPPYITTSEQIAQICAALAAAVKAK 421 (422)
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHhcc
Confidence 89865 349999999999999998754
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-11 Score=115.59 Aligned_cols=270 Identities=11% Similarity=0.022 Sum_probs=163.5
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHh-CC------------eeeeecCCc----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYL-RS------------GLYKWDGDA---- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~---- 118 (360)
+.+++++++++++..+++.... .|.+.+.+|+.-..+|......+-.. |. .+..++.+.
T Consensus 112 ~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 191 (461)
T PRK07482 112 SKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRR 191 (461)
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccc
Confidence 4799999999999999887741 13222235888777777754332221 10 111111110
Q ss_pred ---------------cc----ccc--CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCc
Q 018172 119 ---------------NT----FDK--NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTP 171 (360)
Q Consensus 119 ---------------~~----~~~--~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~ 171 (360)
+. +.. .++.-+|++.-...-.|.+.+ +.++++|+++|+++|.||++.+. ....
T Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~ 271 (461)
T PRK07482 192 ADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS 271 (461)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcc
Confidence 01 111 134556666554555677754 46788999999999999999853 2221
Q ss_pred CC--CCCCccEEEeccccccCCCCc-eEEEEeecCHHHHHHHHH-------HHhhccccCChHHHHHHHHHhcccCCCch
Q 018172 172 IT--GAADHDIMLFTLSKCTGHAGS-RIGWALVKDTEVARKMTR-------FIELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 172 ~~--~~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
.. ...+..-=+-+++|.++ .|. .+|.+++ .+++.+.+.. .....+++.|+++..++.+.|+.+.+.
T Consensus 272 ~~a~~~~gv~PDiv~~gKgl~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~-- 347 (461)
T PRK07482 272 MFGSDHYGIEPDLITVAKGLT-SAYAPLSGSIV-GEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERE-- 347 (461)
T ss_pred hhhHHhcCCCCCEEEEccccc-cCccccceeee-cHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhC--
Confidence 11 11111111334689998 775 8998888 7888877752 123357789999999999999877554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--------------hHHHHHHHH
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--------------DEDCEKLLR 307 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~ 307 (360)
...++.++.=...++.+.+.+.+++.+.-.. +.+.++.+.+.+ ...+...+.
T Consensus 348 ~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vr--------------G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~ 413 (461)
T PRK07482 348 NLVGNAAEVGAYFRARLRAAFGDHPLVGEVR--------------GVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAAL 413 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe--------------eceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHH
Confidence 5555555444444445544445554322122 222233332210 135667788
Q ss_pred hhCeeeeCCCCCCCCCCeEEEE--ecCChHHHHHHHHHHHHHHhch
Q 018172 308 AERIMARGGRRFGADAKYARVS--MLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 308 ~~gI~~~pg~~f~~~~~~~R~s--~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
++||.++++. ..+.+|+. +..++++++++++++.+.+.+.
T Consensus 414 ~~Gvl~~~~~----~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 414 ERGVIARAMP----HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred HCCcEEecCC----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999987532 13578886 4459999999999999999764
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.2e-11 Score=114.98 Aligned_cols=269 Identities=10% Similarity=0.025 Sum_probs=159.7
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHh-CCe------------eeeecCCc----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYL-RSG------------LYKWDGDA---- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~~---- 118 (360)
+.+++++++++++..+++.... .|.+.+.+|+.-.-+|......+-.+ +.. +..++.+.
T Consensus 110 ~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~ 189 (460)
T PRK06105 110 SKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRF 189 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCccccc
Confidence 4799999999999999887531 12111224777777776654332221 211 11111110
Q ss_pred ------------------cc-cc-c-CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccC-CCCCc
Q 018172 119 ------------------NT-FD-K-NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYW-PQYTP 171 (360)
Q Consensus 119 ------------------~~-~~-~-~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~-~~~~~ 171 (360)
+. +. . ..+..+|++.....--|...+ +.+.++|+++|+++|.||++.+ +....
T Consensus 190 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~ 269 (460)
T PRK06105 190 GLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN 269 (460)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch
Confidence 00 10 0 124455666554555677654 4678899999999999999963 22211
Q ss_pred CC--CCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHH-------HhhccccCChHHHHHHHHHhcccCCCch
Q 018172 172 IT--GAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRF-------IELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 172 ~~--~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
.. ...+..-=+.+++|.++ .| +.+|.+++ .+++.+.+... ....+++.|+++..++.+.|+.+.+.
T Consensus 270 ~f~~~~~~v~PDi~~~gK~lg-gG~~P~~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~-- 345 (460)
T PRK06105 270 MFGCETFGIKPDILVMSKQLS-SSYQPLSAVLM-NEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEER-- 345 (460)
T ss_pred hhhHHhcCCCCCeeeeecccc-cCcccceEEEE-cHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhc--
Confidence 11 11111111557899998 66 58999998 78888887542 12356789999999999988877653
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC------------ch--HHHHHHHH
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK------------ED--EDCEKLLR 307 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~--~~~~~~l~ 307 (360)
+.+++.++.=...++.|.+. ++++.+.-. ++.+.+..+.+. .. ..+...+.
T Consensus 346 ~l~~~v~~~g~~l~~~L~~l-~~~~~v~~v--------------rG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~ 410 (460)
T PRK06105 346 DLVGNAAERGARLQARLRAL-ADHPLVGEV--------------RGVGLIAAVELVADKATKTPFEPPGKVGARANAAAH 410 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHh-hcCCCeEEE--------------EecceEEEEEEecCcccCCCCCchhHHHHHHHHHHH
Confidence 44444444433333333332 334322111 122222222221 11 35667778
Q ss_pred hhCeeeeCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhchhc
Q 018172 308 AERIMARGGRRFGADAKYARVSML--SREEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 308 ~~gI~~~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~~~~ 353 (360)
++||.+.+. .+.+||+.. .++++++++++++.+++.+...
T Consensus 411 ~~Gvl~~~~------g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 452 (460)
T PRK06105 411 EHGVISRAM------GDTLAFCPPLIITAAQVDEMVDRFGRALDDVAA 452 (460)
T ss_pred HCCeEEEec------CCEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999872 247899853 4999999999999999987543
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.9e-11 Score=113.08 Aligned_cols=266 Identities=12% Similarity=0.060 Sum_probs=157.1
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCc-HHHHHHhCCe-----------eeeecCCc-----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQY-PAETDYLRSG-----------LYKWDGDA----- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~-~~~~~~~g~~-----------~~~~~~~~----- 118 (360)
+.+++++++++++..+++.... .|..++..|+.-..+|... ...+...|.+ +..++.+.
T Consensus 116 ~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~ 195 (460)
T PRK12403 116 SHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANG 195 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccc
Confidence 4799999999999999888741 1221112344445555554 3333333322 11221000
Q ss_pred -------------cccc----c--CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcC-
Q 018172 119 -------------NTFD----K--NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPI- 172 (360)
Q Consensus 119 -------------~~~~----~--~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~- 172 (360)
+.++ . ..+..+|++.....--|.+.+ +.+.++|+++|+++|.||++.+. .....
T Consensus 196 ~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~ 275 (460)
T PRK12403 196 GELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWF 275 (460)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh
Confidence 0111 0 133445665544555677654 46788999999999999999742 21111
Q ss_pred C-C--CCCccEEEeccccccCCCCc-eEEEEeecCHHHHHHHHHH----HhhccccCChHHHHHHHHHhcccCCCchhHH
Q 018172 173 T-G--AADHDIMLFTLSKCTGHAGS-RIGWALVKDTEVARKMTRF----IELGSIGVSKESQLRAAKILGIVSDDYPNFF 244 (360)
Q Consensus 173 ~-~--~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (360)
. . ....+++ +++|.++ .|. .+|.+++ .+++++.+... ....+++.|+.+..++.+.|+.+.+. ..+
T Consensus 276 a~e~~gv~PDiv--~~gK~lg-gG~~Piga~v~-~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~--~l~ 349 (460)
T PRK12403 276 AHEHFGFEPDTL--SIAKGLT-SGYVPMGGLVL-SKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDE--GVV 349 (460)
T ss_pred hhhhcCCCCCeE--EEccccc-ccccceEEEEE-CHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhc--cHH
Confidence 1 1 1123444 4899998 784 8998888 78888887531 12356778999999999999877553 445
Q ss_pred HHHH-HHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc------------h--HHHHHHHHhh
Q 018172 245 EYGR-RLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE------------D--EDCEKLLRAE 309 (360)
Q Consensus 245 ~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~l~~~ 309 (360)
++.+ +.-...++.+.+...+++.+.-.. +.+.++.+.+.+ . ..+...+.++
T Consensus 350 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vr--------------G~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (460)
T PRK12403 350 TRVKDDTGPYLQRCLREVFGDHPLVGEVQ--------------GAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEE 415 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeEe--------------ecceEEEEEEccCccccccccchhHHHHHHHHHHHhC
Confidence 5554 333444444444444454322222 222233332210 0 2244566789
Q ss_pred CeeeeCCCCCCCCCCeEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 310 RIMARGGRRFGADAKYARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 310 gI~~~pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
|+.+.+. .+.+|++... ++++++++++++.+++.+.
T Consensus 416 Gll~~~~------~~~~~l~Ppl~it~~eid~~~~~l~~al~~~ 453 (460)
T PRK12403 416 GVIIRST------LGRMIMAPALVAGRAEIDELVDKTRIAVDRT 453 (460)
T ss_pred CEEEEec------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999752 1357887644 9999999999999999775
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-11 Score=114.62 Aligned_cols=257 Identities=14% Similarity=0.058 Sum_probs=157.4
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CCe-------------eeeecCCc------
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RSG-------------LYKWDGDA------ 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~-------------~~~~~~~~------ 118 (360)
+.+.+++++++++..+++.... .|.. +|+.-+-+|......+-.. +.. +..++.+.
T Consensus 116 ~~v~f~~SGsEA~e~AlklAr~~tgr~---~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (441)
T PRK05769 116 KKVFFTNSGTESNEAAIKIARYHTGRK---YIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPW 192 (441)
T ss_pred CEEEECCchHHHHHHHHHHHHHHhCCC---eEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccc
Confidence 5899999999999998886632 2322 3777777777765433222 211 11222110
Q ss_pred c-------------cccc--------CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCc-
Q 018172 119 N-------------TFDK--------NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTP- 171 (360)
Q Consensus 119 ~-------------~~~~--------~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~- 171 (360)
+ .++. ..+..+|++.......|...+ +.+.++|+++|+++|+||++.+.....
T Consensus 193 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~ 272 (441)
T PRK05769 193 GIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK 272 (441)
T ss_pred cCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc
Confidence 0 0111 134555565544556777655 466788999999999999998421111
Q ss_pred C-C-CCC--CccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 172 I-T-GAA--DHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 172 ~-~-~~~--~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
. . ... ..+++ +++|.++ .|+++|++++ ++++++.+.. ....+++.+++++.++.+.|+.+. + +.
T Consensus 273 ~~a~~~~gv~pDiv--t~~K~l~-~G~p~gav~~-~~~i~~~~~~-~~~~T~~g~p~~~aaa~a~L~~l~----~---~~ 340 (441)
T PRK05769 273 MFAIEHFGVEPDII--TLAKAIA-GGLPLGAVIG-RAELMFLPPG-SHANTFGGNPVAAAAALATLEELE----E---GL 340 (441)
T ss_pred eehhhccCCCCCEE--EEccccc-CCcccEEEEE-ehhhhhcCCC-CCCCCCCcCHHHHHHHHHHHHHHH----H---HH
Confidence 1 0 111 12443 5789999 8999999998 7777654322 233466778999988888887542 1 44
Q ss_pred HHHHHHHHHHHHHHHHhc----CCcccCCCCCcccccccccCCCCCCcccccCC------ch---HHHHHHHHhhCeeee
Q 018172 248 RRLMSERWNMLRQVIRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK------ED---EDCEKLLRAERIMAR 314 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~l~~~gI~~~ 314 (360)
.+.++++-+++.+.|+++ +.+. .. .+.+.++.+.+. +. ..+.+.+.++||.+.
T Consensus 341 ~~~~~~~g~~l~~~L~~l~~~~~~~~--~v------------rg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~ 406 (441)
T PRK05769 341 LENAQKLGEYLRKELKELKEKYEFIG--DV------------RGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLL 406 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCee--ee------------ecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEe
Confidence 555556666666666544 2111 11 122223333331 11 456677778999987
Q ss_pred CCCCCCCCCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 315 GGRRFGADAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 315 pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
+. ..+.+||+... ++++++++++++.+++.+
T Consensus 407 ~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 407 GA-----GKSAIRIIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred cC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 62 23578998655 999999999999999864
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-11 Score=114.98 Aligned_cols=268 Identities=14% Similarity=0.089 Sum_probs=158.6
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHh-CCe------------eeeecCC-----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYL-RSG------------LYKWDGD----- 117 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~----- 117 (360)
+.++++++++++...+++.... .|.+.+.+|+.-.-+|.......... |.. +..++.+
T Consensus 112 ~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~ 191 (456)
T PRK07480 112 NHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGE 191 (456)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCccccc
Confidence 4899999999999999887632 12221234777777776654322221 111 1111100
Q ss_pred -----c--------cccc----c--CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcC
Q 018172 118 -----A--------NTFD----K--NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPI 172 (360)
Q Consensus 118 -----~--------~~~~----~--~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~ 172 (360)
. +.++ . ..+..+|++.-...-.|.+.+ +.+.++|+++|+++|.||++.+. .....
T Consensus 192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 271 (456)
T PRK07480 192 GGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEW 271 (456)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 0 1111 1 134556666555555677655 46788999999999999999742 22111
Q ss_pred C--CCCCccEEEeccccccCCCCc-eEEEEeecCHHHHHHHHH----HHhhccccCChHHHHHHHHHhcccCCCchhHHH
Q 018172 173 T--GAADHDIMLFTLSKCTGHAGS-RIGWALVKDTEVARKMTR----FIELGSIGVSKESQLRAAKILGIVSDDYPNFFE 245 (360)
Q Consensus 173 ~--~~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (360)
. ...+..-=+.+++|.++ .|. .+|.+++ .+++++.+.. +....+++.|+++..++.+.|+.+.+. ...+
T Consensus 272 ~a~~~~gv~PDiv~~gK~l~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~--~l~~ 347 (456)
T PRK07480 272 FGSQHFGIKPDLMTIAKGLT-SGYIPMGAVGV-GDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDE--GIVE 347 (456)
T ss_pred hhhhhcCCCCCeeeeehhhc-cCCccceEEEE-cHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhC--CHHH
Confidence 1 11121111457799998 674 8999998 7888887731 223467889999999999999876543 4444
Q ss_pred HHH-HHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC----------c----hHHHHHHHHhhC
Q 018172 246 YGR-RLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK----------E----DEDCEKLLRAER 310 (360)
Q Consensus 246 ~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~----~~~~~~~l~~~g 310 (360)
+.+ +.=...++.+.+ +.+++.+.-. .+.+.++.+.+. + ...+...+.++|
T Consensus 348 ~~~~~~g~~l~~~l~~-l~~~~~i~~v--------------rG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 412 (456)
T PRK07480 348 RVRDDTGPYLQKRLRE-LADHPLVGEV--------------RGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANG 412 (456)
T ss_pred HHHHHHHHHHHHHHHH-hhcCCCeeeE--------------EeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCC
Confidence 442 222333333333 3334321111 122223333321 1 135666788999
Q ss_pred eeeeCCCCCCCCCCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 311 IMARGGRRFGADAKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 311 I~~~pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
|.+.+. .+.+||+... ++++++++++++.+.+.+..
T Consensus 413 ll~~~~------~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~ 450 (456)
T PRK07480 413 LIMRAV------GDRMIISPPLVITHAEIDELVEKARKALDATA 450 (456)
T ss_pred cEEeec------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 998752 2478887654 99999999999999998753
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-11 Score=115.11 Aligned_cols=261 Identities=10% Similarity=0.023 Sum_probs=157.8
Q ss_pred CcEEEcCChHHHHHHHHHhhcC------CCCCCCceEEEeCCCCCCcHHHHHHh-CCe-------------eeeecCCc-
Q 018172 60 RHIVIGTGSTQLYQAALYALSS------PGGPEPISVVSAAPYYSQYPAETDYL-RSG-------------LYKWDGDA- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~------~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~-------------~~~~~~~~- 118 (360)
+.+++++++++++..+++.... .|. .+|+.-..+|......+-.. +-. +..++...
T Consensus 104 ~~v~f~~SGsEAve~AlklAr~~~~~~g~~r---~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~ 180 (428)
T PRK07986 104 ECVFLADSGSVAVEVAMKMALQYWQAKGEPR---QRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQS 180 (428)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCC---cEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCc
Confidence 5899999999999998887642 222 24888888887654332221 211 11111110
Q ss_pred -----------ccc----cc-CCCeeEEEEcCC-CCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcC-C-
Q 018172 119 -----------NTF----DK-NNGAYIEVVNSP-NNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPI-T- 173 (360)
Q Consensus 119 -----------~~~----~~-~~~~~~i~~~~p-~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~-~- 173 (360)
+.+ .. ..+..+|++... +.-.|...+ +.+.++|+++|+++|+||++.+. ..... .
T Consensus 181 ~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~ 260 (428)
T PRK07986 181 RFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFAC 260 (428)
T ss_pred ccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeee
Confidence 011 11 123445555442 444565433 46778999999999999998642 11111 1
Q ss_pred CCC--CccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHH-----HhhccccCChHHHHHHHHHhcccCCCchhHHH
Q 018172 174 GAA--DHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRF-----IELGSIGVSKESQLRAAKILGIVSDDYPNFFE 245 (360)
Q Consensus 174 ~~~--~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (360)
... ..+++ +++|.++ .| +.+|.+++ .+++.+.+... ....+++.|+++..++.+.|+.+.+. +.
T Consensus 261 ~~~gv~PDi~--t~gK~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~--~~-- 332 (428)
T PRK07986 261 EHAGIAPDIL--CLGKALT-GGTMTLSATLT-TREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESG--DW-- 332 (428)
T ss_pred cccCCCCCEE--Eechhhh-CCcccCcchhc-hHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC--CH--
Confidence 111 22344 5899998 77 58888887 78888888642 13356778899999998888866543 33
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCC
Q 018172 246 YGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGAD 322 (360)
Q Consensus 246 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~ 322 (360)
+++.+++-+++.+.|+++....... .+++.+.++.+.+.+. ..+.+.+.++||++.+.
T Consensus 333 --~~~~~~~g~~l~~~l~~l~~~~~i~-----------~vRg~Gl~~~ve~~~~~~~~~~~~~l~~~Gl~~~~~------ 393 (428)
T PRK07986 333 --QQQVAAIEAQLREELAPLRDAPMVA-----------DVRVLGAIGVVETTRPVNMAALQRFFVEQGVWIRPF------ 393 (428)
T ss_pred --HHHHHHHHHHHHHHHHHHhcCCCEE-----------eEeccceEEEEEeCCcccHHHHHHHHHHCCcEEEec------
Confidence 3444444445555554431110000 1223344444544432 56777888999999873
Q ss_pred CCeEEEE--ecCChHHHHHHHHHHHHHHhc
Q 018172 323 AKYARVS--MLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 323 ~~~~R~s--~~~~~e~~~~~~~~l~~~~~~ 350 (360)
.+.+||. +..++|++++++++|.+.+..
T Consensus 394 g~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 394 GKLIYLMPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 2489995 445999999999999999864
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.9e-11 Score=114.48 Aligned_cols=265 Identities=13% Similarity=0.086 Sum_probs=161.7
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHh-CC------------eeeeecCCc----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYL-RS------------GLYKWDGDA---- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~---- 118 (360)
+.+++++++++++..+++.... .|.+.+.+|+.-..+|......+... +. .+..++.+.
T Consensus 108 ~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (459)
T PRK05965 108 NHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRN 187 (459)
T ss_pred CEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCccccc
Confidence 4799999999999999887532 23222235888888888765332221 11 011221110
Q ss_pred ---c-----------cccc-----C-CCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcC
Q 018172 119 ---N-----------TFDK-----N-NGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPI 172 (360)
Q Consensus 119 ---~-----------~~~~-----~-~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~ 172 (360)
+ .++. . ++.-+|++.-.....|.+.+ +.++++|+++|+++|.||++.+. .....
T Consensus 188 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~ 267 (459)
T PRK05965 188 PVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPL 267 (459)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchh
Confidence 0 1111 1 34566666655566677654 46788999999999999999853 22111
Q ss_pred C--CCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHH-------HHhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 173 T--GAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTR-------FIELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 173 ~--~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
. ...+..-=+-+++|.++ .| +.+|.+++ .+++.+.+.. +....+++.|+++..++.+.|+.+.+. .
T Consensus 268 ~a~~~~gv~PDiv~~gKgl~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~--~ 343 (459)
T PRK05965 268 FACEAEGVVPDLMTVAKGLT-SGYVPMGAVLM-SDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEG--G 343 (459)
T ss_pred hhHhhcCCCCCeEEechhhc-cCCcceeEEEE-cHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhc--c
Confidence 1 11221122445689998 78 49999998 8898887753 223457789999999999988876553 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc---CCcccCCCCCcccccccccCCCCCCcccccCC-----------c---hHHHHHH
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQS---GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-----------E---DEDCEKL 305 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~ 305 (360)
.+++.+ +.-+++.+.|+++ +.+.- +++.+.++.+.+. + ...+...
T Consensus 344 l~~~~~----~~g~~l~~~l~~l~~~~~v~~--------------vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~ 405 (459)
T PRK05965 344 LLANGQ----KAGPRFAAGLDALRAHPLVGD--------------VRGRGLLGALELVADKATKTPFDAALDPADRIFDR 405 (459)
T ss_pred HHHHHH----HHHHHHHHHHHhhccCCCEEE--------------EeecceEEEEEEeccccccCCCCchhHHHHHHHHH
Confidence 444443 3344444444433 22111 1233333333221 0 1446677
Q ss_pred HHhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHHhch
Q 018172 306 LRAERIMARGGRRFGADAKYARVSM--LSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 306 l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~~ 351 (360)
+.++||++.+. + .+.+|+.. ..++++++++++++.+.+.+.
T Consensus 406 ~~~~Gll~~~~---g--~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~ 448 (459)
T PRK05965 406 AYANGLVFRAF---G--DGVLGFAPALCCTEGEFDLIFERTRKTLDDV 448 (459)
T ss_pred HHhCCeEEEec---C--CcEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 78999999762 2 45788874 349999999999999999753
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.6e-11 Score=121.39 Aligned_cols=291 Identities=13% Similarity=0.054 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEc-CChHHHHHHHHHhh----cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIG-TGSTQLYQAALYAL----SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYK 113 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t-~G~t~~l~~~~~~l----~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~ 113 (360)
.++.+.++++.|. + ++.+. +|++++....+..+ .++|+..+.+|++++..|......+..+|++++.
T Consensus 545 ~e~q~~l~eltG~-------d-~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~ 616 (954)
T PRK05367 545 DQLEAWLAEITGY-------D-AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVV 616 (954)
T ss_pred HHHHHHHHHHHCC-------C-CEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEE
Confidence 3445555555663 2 45554 56666654433333 2566643446999999999999999999999999
Q ss_pred ecCCccc------ccc-----CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-CcCCCCCCccE
Q 018172 114 WDGDANT------FDK-----NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-TPITGAADHDI 180 (360)
Q Consensus 114 ~~~~~~~------~~~-----~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-~~~~~~~~~~i 180 (360)
++.+.++ +.. +.++.+|++++|++-.+...+ +++.++++++|+++++|.++..... ...+...+.++
T Consensus 617 v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi 696 (954)
T PRK05367 617 VACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADV 696 (954)
T ss_pred ECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCE
Confidence 9876433 211 135778888999875333344 6677777779999999999864321 22235677899
Q ss_pred EEeccccccCCC----CceEEEEeecCHHHHHHHHHHH-----h---hccccCChHHH----HHHHHHhcccCCCchhHH
Q 018172 181 MLFTLSKCTGHA----GSRIGWALVKDTEVARKMTRFI-----E---LGSIGVSKESQ----LRAAKILGIVSDDYPNFF 244 (360)
Q Consensus 181 ~~~S~sK~~~~~----G~r~G~~~~~~~~~~~~l~~~~-----~---~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 244 (360)
++.|.+|.|+.| |=.+|++.+ ...+...+.... . .+..+.+..+| ..+...+..+ +. +.+
T Consensus 697 ~~~s~HK~f~~P~G~GGPg~G~l~v-r~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~-G~--~Gl 772 (954)
T PRK05367 697 SHLNLHKTFCIPHGGGGPGVGPIGV-KAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMM-GA--EGL 772 (954)
T ss_pred EEecCcccCCCCcCCCCCceEEEee-cccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHH-CH--HHH
Confidence 999999987522 222677777 444444432110 0 01111122222 1122233321 22 556
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccc-cCC-----chHHHHHHHHhhCeeeeCCCC
Q 018172 245 EYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWL-ESK-----EDEDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~~gI~~~pg~~ 318 (360)
.+..+..-.+.+++.+.|.+.-.+.+..+.+.. + ....+.+ .++ ..+++.+.|.++|+.... ..
T Consensus 773 r~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~--~-------~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t-~~ 842 (954)
T PRK05367 773 RQATEVAILNANYIAKRLKDHYPVLYTGANGRV--A-------HECILDLRPLKESTGITVDDIAKRLIDYGFHAPT-MS 842 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccccCCCCCc--c-------cceEEEeecccccCCCCHHHHHHHHHHCCCeEee-cC
Confidence 666666667888999999775222222221110 0 0011111 222 127788888999998654 33
Q ss_pred CCCCCCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 319 FGADAKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 319 f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
|. .++.+|++.+- +++|+|++++++..+..+..
T Consensus 843 ~p-v~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~ 877 (954)
T PRK05367 843 FP-VAGTLMVEPTESESKAELDRFCDAMIAIRAEID 877 (954)
T ss_pred Cc-cCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHH
Confidence 54 36788998755 89999999999999887643
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-11 Score=115.98 Aligned_cols=294 Identities=12% Similarity=0.026 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHh-hcCCCCCC----CCcEEEcCChHHHHHHHHHhhcC-----CC--CCCCceEEEeCCCCCCcHHHHHH
Q 018172 39 PELAEAINNLHH-VVDNAVSD----GRHIVIGTGSTQLYQAALYALSS-----PG--GPEPISVVSAAPYYSQYPAETDY 106 (360)
Q Consensus 39 ~~lr~~la~~~~-~~~~~~~~----~~~i~~t~G~t~~l~~~~~~l~~-----~g--d~~~~~vl~~~p~~~~~~~~~~~ 106 (360)
.++++.+.+|+. ..|.+-.- ...-++|+|+|+++...+....+ .| ..++..|++++-+|.++..++..
T Consensus 121 ~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~ 200 (490)
T PLN02880 121 TELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQI 200 (490)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHH
Confidence 788888877643 44443210 02367889999997666555422 11 11123477899999999999999
Q ss_pred hCCe---eeeecCCc-c--ccccC-------------CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccC
Q 018172 107 LRSG---LYKWDGDA-N--TFDKN-------------NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYW 166 (360)
Q Consensus 107 ~g~~---~~~~~~~~-~--~~~~~-------------~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~ 166 (360)
+|+. ++.++.|. + .++.+ ..+.+|+-+..+-+||.+-| +++.++|+++|+|+++|.||++
T Consensus 201 lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg 280 (490)
T PLN02880 201 AGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAG 280 (490)
T ss_pred cCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHH
Confidence 9984 66777763 2 23221 12456666777788999988 8888999999999999999986
Q ss_pred CCCCc------CCCCCCccEEEeccccccCCCCceEEEEeecCHHH-HHHHHHHHhhcc--------------c---cCC
Q 018172 167 PQYTP------ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEV-ARKMTRFIELGS--------------I---GVS 222 (360)
Q Consensus 167 ~~~~~------~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~-~~~l~~~~~~~~--------------~---~~~ 222 (360)
..... +.+....+-+..++||.+. ....+|.++.++... .+.+.....+.. + ...
T Consensus 281 ~~~~~~~~~~~l~gie~aDSit~d~HKwl~-~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~r 359 (490)
T PLN02880 281 SACICPEYRHYIDGVEEADSFNMNAHKWFL-TNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGR 359 (490)
T ss_pred HHHhCHHHHHHhcCchhcCEEEECchhhcC-CCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCC
Confidence 42221 2334566889999999765 777899888855432 233321111000 0 000
Q ss_pred hHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC-CcccccccccCCCCCCcccccCC----
Q 018172 223 KESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYP-LEYCNFTGKFTNSHPGFAWLESK---- 297 (360)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---- 297 (360)
......+...++.+ + .+.+.+..+...+..+++.+.|++.+++++..+. ....+ ++++
T Consensus 360 r~~alklw~~l~~~-G--~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~--------------Fr~~~~~~ 422 (490)
T PLN02880 360 RFRSLKLWMVLRLY-G--VENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVC--------------FRLVPPKN 422 (490)
T ss_pred cccHHHHHHHHHHh-C--HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEE--------------EEEeCCCC
Confidence 11122222233321 2 1455555555568888999999988777776553 22222 2221
Q ss_pred c----h---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC---ChHHHHHHHHHHHHHHhch
Q 018172 298 E----D---EDCEKLLRAERIMARGGRRFGADAKYARVSMLS---REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 298 ~----~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~ 351 (360)
+ . ..+.+.|.+.|-.......+. +..++|+++.. ++++++.+++.|.++.++.
T Consensus 423 ~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~-g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~ 485 (490)
T PLN02880 423 NEDNGNKLNHDLLDAVNSSGKIFISHTVLS-GKYVLRFAVGAPLTEERHVTAAWKVLQDEASKL 485 (490)
T ss_pred ChhhHHHHHHHHHHHHHhCCCEEEEEEEEC-CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 1 334444444544443333333 25699999855 6799999999999887653
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.4e-11 Score=109.21 Aligned_cols=278 Identities=12% Similarity=0.044 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCc-EEEcCChHHHHHHHHHhhc-CCCCCCCceEEEeCCCCCCc-H-HHHHHhCC-eeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRH-IVIGTGSTQLYQAALYALS-SPGGPEPISVVSAAPYYSQY-P-AETDYLRS-GLYK 113 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~-i~~t~G~t~~l~~~~~~l~-~~gd~~~~~vl~~~p~~~~~-~-~~~~~~g~-~~~~ 113 (360)
.++++.+.++++. + .+.+ +++++|+|.++..++..++ ++|+. +++.. .|+.- . .+++.+|+ ++..
T Consensus 42 ~e~~~~L~~l~~~---~--~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~----vLv~g-~FG~r~~~eia~~~g~~~v~~ 111 (374)
T TIGR01365 42 AEAIKKTREMLGV---P--ADYLIGIVPASDTGAVEMALWSMLGCRGVD----VLAWE-SFGKGWVTDVTKQLKLPDVRV 111 (374)
T ss_pred HHHHHHHHHHhCC---C--CCcEEEEECCchHHHHHHHHHHcCCCCCCe----EEEEC-HHHHHHHHHHHHhcCCCCcEE
Confidence 4555666666653 1 1223 5669999999999999998 47876 88764 55544 4 78888999 4666
Q ss_pred ecCCc------cccccCCCeeEEEEcCCCCCCcccchHHHHHHhhh-cCcEEEEeecccCCCCCcCCCCCCccEEEeccc
Q 018172 114 WDGDA------NTFDKNNGAYIEVVNSPNNPDGTIREAVLAKVNRS-AEGKLIHDLAYYWPQYTPITGAADHDIMLFTLS 186 (360)
Q Consensus 114 ~~~~~------~~~~~~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~-~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~s 186 (360)
++.+. +.++. + +.|++++---.||+..+- .+++++ ++.++|+|.+=+.+..+-..+ +-++++.|..
T Consensus 112 l~~~~g~~~~~~~ve~--~-~~v~~vhnETSTGv~npv--~~i~~~~~~~lliVDavSs~g~~~l~~d--~iDv~~tgsQ 184 (374)
T TIGR01365 112 LEAEYGKLPDLKKVDF--K-NDVVFTWNGTTSGVRVPN--GDFIPADREGLTICDATSAAFAQDLDYH--KLDVVTFSWQ 184 (374)
T ss_pred EcCCCCCCCCHHHcCC--C-CCEEEecCCCchheeccc--cccccccCCCcEEEEccchhcCCCCChh--HCcEEEEech
Confidence 65432 22222 1 224444433478988873 232332 589999999866543333333 3789999999
Q ss_pred cccCCCCceEEEEeecCHHHHHHHHHH---------H--------------hhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 187 KCTGHAGSRIGWALVKDTEVARKMTRF---------I--------------ELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 187 K~~~~~G~r~G~~~~~~~~~~~~l~~~---------~--------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
|.++.|+ .+++++. +++.++..... . ..+..+++.....++..+++.+.+. .-
T Consensus 185 K~L~~pp-Gls~v~v-s~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~e--gG 260 (374)
T TIGR01365 185 KVLGGEG-AHGMLIL-SPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESI--GG 260 (374)
T ss_pred hccCCCC-ceEEEEE-CHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHc--cC
Confidence 9998755 3677777 67666654421 0 1112223333444444445433221 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC--C-------c-----hHHHHHHHHhh
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES--K-------E-----DEDCEKLLRAE 309 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~-----~~~~~~~l~~~ 309 (360)
++...++.+++.+.+++.+++.+++.+....... ++.+. ..+.+ + + ...+.+.|+++
T Consensus 261 le~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~--------rS~tv-t~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (374)
T TIGR01365 261 LKPLIARADDNLAVLEAFVAKNNWIHFLAETPEI--------RSNTS-VCLKVVDPAIDALDEDAQADFAKELISTLEKE 331 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhh--------cCCCe-EEEEeCCccccccccchhhHHHHHHHHHHHHC
Confidence 9999999999999999999999745544321111 12211 11222 1 1 35688899999
Q ss_pred CeeeeCCCCCCCCCCeEEEEe-cC-ChHHHHHHHHHHHHH
Q 018172 310 RIMARGGRRFGADAKYARVSM-LS-REEIFNIFLERLSAI 347 (360)
Q Consensus 310 gI~~~pg~~f~~~~~~~R~s~-~~-~~e~~~~~~~~l~~~ 347 (360)
||.+.+|..-- .+..+||+- .. ++++++++++.|.=+
T Consensus 332 gi~i~~G~~~~-~~~~fRIg~~G~i~~~di~~l~~~l~~~ 370 (374)
T TIGR01365 332 GVAYDIGSYRD-APSGLRIWCGATVEKSDLECLCPWLDWA 370 (374)
T ss_pred CEEEecccccc-CCCceEEecCCcCCHHHHHHHHHHHHHH
Confidence 99999876433 257899964 33 899999999988643
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=9e-11 Score=112.33 Aligned_cols=275 Identities=12% Similarity=0.027 Sum_probs=162.3
Q ss_pred CCcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHH-H-hCCe-----------------eeeecC-C
Q 018172 59 GRHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETD-Y-LRSG-----------------LYKWDG-D 117 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~-~-~g~~-----------------~~~~~~-~ 117 (360)
.+.+.+++++||+...+++.... .|.. +|+.-+-+|......+- . .+.+ +..++. |
T Consensus 130 ~~~v~F~nSGtEA~e~AlrlAR~~TGr~---~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd 206 (453)
T PRK07046 130 LPYWQVATTATDANRFVLRWARAVTGRP---KILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFND 206 (453)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHhhCCC---EEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCC
Confidence 35899999999999998887642 2332 48877777777642211 1 1110 011110 1
Q ss_pred cccccc---CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccC----CCCCcCCCCCCccEEEecc
Q 018172 118 ANTFDK---NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYW----PQYTPITGAADHDIMLFTL 185 (360)
Q Consensus 118 ~~~~~~---~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~----~~~~~~~~~~~~~i~~~S~ 185 (360)
.+.++. ..+..+|++.-.....|.+.+ +.++++|+++|+++|.||++.+ +......+ ...++ .++
T Consensus 207 ~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~~~g-v~PDi--~t~ 283 (453)
T PRK07046 207 LAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRAHG-LEPDF--LVV 283 (453)
T ss_pred HHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhHHhC-CCccc--eee
Confidence 111111 234555666544444576655 4678899999999999999851 11111111 11233 368
Q ss_pred ccccCCCCceEEEEeecCHHHHHHHHHH---------HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHH
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARKMTRF---------IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWN 256 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (360)
+|.+| .|+.+|.+++ ..++++.+... ....+++.|+++..++.+.|+.+.+. +..++..+.-...++
T Consensus 284 gK~lg-gG~Pi~av~g-~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~--~~~~~~~~~g~~l~~ 359 (453)
T PRK07046 284 GKPIA-GGVPCAVYGF-SAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTE--AAYAHMLALAARLAA 359 (453)
T ss_pred hhhhc-CCCcceeeee-hHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHH
Confidence 99999 8999999988 78888887632 12346778999999999998877554 455555555555555
Q ss_pred HHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-ch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC
Q 018172 257 MLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-ED---EDCEKLLRAERIMARGGRRFGADAKYARVSMLS 332 (360)
Q Consensus 257 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~ 332 (360)
.+.+.+.+++......-.|.+..+.-. .....++...... +. ..+...+.++||.+.|. .+.++++...
T Consensus 360 ~L~~l~~~~~~~~~v~g~G~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~------~~~~~~~p~~ 432 (453)
T PRK07046 360 GLRAVIARHGLPWHVTRVGARVEFQFA-PTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF------HNMMLVCPAT 432 (453)
T ss_pred HHHHHHHhCCCCeEEEEeCcEEEEEEe-CCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc------cCcEEEeCCC
Confidence 555555555422212122222111000 0000011111101 11 44566677899998762 2357888767
Q ss_pred ChHHHHHHHHHHHHHHhc
Q 018172 333 REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 333 ~~e~~~~~~~~l~~~~~~ 350 (360)
++++++++++++.+.+.+
T Consensus 433 t~~did~~~~~~~~~l~~ 450 (453)
T PRK07046 433 TAADVDRLVAAFDACLGE 450 (453)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999999865
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-10 Score=111.61 Aligned_cols=277 Identities=12% Similarity=0.064 Sum_probs=160.1
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHH-hCCe-------------------eeeecC-C
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDY-LRSG-------------------LYKWDG-D 117 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~-~g~~-------------------~~~~~~-~ 117 (360)
+.+.+++++++++..+++.... .|.. +|+.-+-+|......+-. .|.. +..++. |
T Consensus 110 ~~v~f~~sGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 186 (428)
T PRK12389 110 EKVRFVNSGTEAVMTTIRVARAYTGRT---KIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFND 186 (428)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHhhCCC---EEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCC
Confidence 5899999999999999887642 2322 477777777776543322 2211 111111 1
Q ss_pred cccccc-----CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCcC--CCCCCccEEEecc
Q 018172 118 ANTFDK-----NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTPI--TGAADHDIMLFTL 185 (360)
Q Consensus 118 ~~~~~~-----~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~~--~~~~~~~i~~~S~ 185 (360)
.+.++. ..+..+|++.......|.+.+ +.+.++|+++|+++|.||++.+...... ....+..-=+.++
T Consensus 187 ~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDivt~ 266 (428)
T PRK12389 187 IEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDLTAL 266 (428)
T ss_pred HHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCeeee
Confidence 111111 134556666555556787765 4677899999999999999985422111 1111111113588
Q ss_pred ccccCCCCceEEEEeecCHHHHHHHHH---HHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARKMTR---FIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVI 262 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (360)
+|.++ .|+.+|.+++ ++++++.+.. .....+++.|+++..++.+.|+.+.+. ...++.++.-...++.+.+..
T Consensus 267 gK~lg-gG~Pi~av~~-~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~--~l~~~~~~~g~~l~~~L~~l~ 342 (428)
T PRK12389 267 GKIIG-GGLPIGAYGG-RKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQE--GVYEKLDRLGAMLEEGILEAA 342 (428)
T ss_pred chhhc-CCCceeEEeE-HHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHH
Confidence 99998 8899999988 7888888752 223356788999999999999877553 444444444333334443333
Q ss_pred HhcCCcc-cCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHH
Q 018172 263 RQSGVFG-LPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFN 338 (360)
Q Consensus 263 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~ 338 (360)
.+++.+. +....| +..+. ........+.....++. ..+...+.++||.+.+.. .+.+.+++..++|+++
T Consensus 343 ~~~~~~~~v~r~~g-~~gi~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~~~l~~t~e~id 415 (428)
T PRK12389 343 EKHGITITINRLKG-ALTVY-FTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSK-----YEAWFLTTAHTEEDIE 415 (428)
T ss_pred HhCCCCEEEEecCc-EEEEE-EeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCC-----CCCeeecCCCCHHHHH
Confidence 3343211 111111 11000 00000000000000111 456778888999998742 1234677767999999
Q ss_pred HHHHHHHHHHhc
Q 018172 339 IFLERLSAIQGG 350 (360)
Q Consensus 339 ~~~~~l~~~~~~ 350 (360)
++++++.+++.+
T Consensus 416 ~~~~~l~~~l~~ 427 (428)
T PRK12389 416 ETLEAVDRAFAQ 427 (428)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.5e-11 Score=120.58 Aligned_cols=274 Identities=13% Similarity=0.086 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYK 113 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~ 113 (360)
-++++.++++.|. +.+++.++.++|++.+.++.++ +++|+. .+|++++..|+.+...++. .|++++.
T Consensus 151 ~~~Qt~ia~LtG~------~~anaSL~d~aTAaaea~~~a~~~~~g~~--~~VlVs~~~hP~~~~v~~t~a~~~GieV~~ 222 (993)
T PLN02414 151 LNYQTMITDLTGL------PMSNASLLDEGTAAAEAMAMCNNILKGKK--KKFLIASNCHPQTIDVCQTRADGLGLEVVV 222 (993)
T ss_pred HHHHHHHHHHhCC------ChhhEeecCChHHHHHHHHHHHhcccCCC--CEEEEcCccCHhHHHHHHHhhhhcCCEEEE
Confidence 5677888899887 6679999999999999988777 444421 2499999999998766544 5999998
Q ss_pred ecCCccccccCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCc--CCCCCCccEEEeccccccC
Q 018172 114 WDGDANTFDKNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTP--ITGAADHDIMLFTLSKCTG 190 (360)
Q Consensus 114 ~~~~~~~~~~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~--~~~~~~~~i~~~S~sK~~~ 190 (360)
++.+..... +.....+++.+|| .+|.+.+ +.+.++|+++|+++++ .+... .... -++..+.++++++..|..+
T Consensus 223 v~~~~~~~~-~~~v~~vlvq~P~-~~G~v~dv~~I~~~ah~~GaL~iV-aad~l-al~~l~~pge~GADi~vgsgqKwg~ 298 (993)
T PLN02414 223 ADEKDFDYS-SGDVCGVLVQYPA-TDGEVLDYAEFVKNAHANGVKVVM-ATDLL-ALTMLKPPGEWGADIVVGSAQRFGV 298 (993)
T ss_pred ecchhhccc-cCceEEEEEecCC-CCeEEcCHHHHHHHHHHcCCEEEE-EECHH-HhcCCCCHhhccCcEEEECCCcccc
Confidence 876542211 2234455555665 5999988 6777777779999998 44332 1122 2567889999999999652
Q ss_pred CC---CceEEEEeecCHHHHHHHH-HHHhh-----------------------ccccCChHHHHHHHHHhccc----CCC
Q 018172 191 HA---GSRIGWALVKDTEVARKMT-RFIEL-----------------------GSIGVSKESQLRAAKILGIV----SDD 239 (360)
Q Consensus 191 ~~---G~r~G~~~~~~~~~~~~l~-~~~~~-----------------------~~~~~~~~~~~~~~~~l~~~----~~~ 239 (360)
+- |=+.|++.+ .+++.+.+- +.... --.+.|-.+..++.+.+... ...
T Consensus 299 P~G~GGP~aGflav-r~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~ 377 (993)
T PLN02414 299 PMGYGGPHAAFLAT-SQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGP 377 (993)
T ss_pred CCCCCCCCeeEEEE-CHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhcc
Confidence 21 223799988 666655442 11100 00122222222333322211 111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCC
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRF 319 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f 319 (360)
.-+.++++++.++.+++.+.|...+ +.+..+. + | .-+.+++++.+.+.+.|.++||.++..
T Consensus 378 --~Gl~~Ia~ri~~la~~l~~~L~~~G-~~~~~~~--~--f---------~~vt~~~~~~~~v~~~L~~~gI~l~~~--- 438 (993)
T PLN02414 378 --EGLKTIAQRVHGLAGVFAAGLKKLG-FQVQSLP--F--F---------DTVKVKCSDADAIADAAAKVGINLRVV--- 438 (993)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHhhcC-CccCCCC--C--c---------CeEEEecCCHHHHHHHHHHCCCeeEEe---
Confidence 5577888889999999999998764 4443321 1 0 023445555577888999999977642
Q ss_pred CCCCCeEEEEecC--ChHHHHHHHHHHHH
Q 018172 320 GADAKYARVSMLS--REEIFNIFLERLSA 346 (360)
Q Consensus 320 ~~~~~~~R~s~~~--~~e~~~~~~~~l~~ 346 (360)
+ .+.+|+|+.- ++||++++++++..
T Consensus 439 ~--~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 439 D--ANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred c--CCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 1 4579999855 89999999999974
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-10 Score=104.14 Aligned_cols=261 Identities=15% Similarity=0.155 Sum_probs=171.8
Q ss_pred cEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH---HHhC--CeeeeecCCcccccc----------CC
Q 018172 61 HIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET---DYLR--SGLYKWDGDANTFDK----------NN 125 (360)
Q Consensus 61 ~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~---~~~g--~~~~~~~~~~~~~~~----------~~ 125 (360)
+|-..|| +++...++.+|++|||+ |+-.+-.+..+..-- ...| ++++.+++|.+.... ..
T Consensus 91 nVQPhSG-s~AN~av~~All~pGDt----imgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~ 165 (413)
T COG0112 91 NVQPHSG-SQANQAVYLALLQPGDT----IMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEV 165 (413)
T ss_pred ccCCCCc-hHHHHHHHHHHcCCCCe----EecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHh
Confidence 4545555 78889999999999998 887776665554322 2222 466666777553332 35
Q ss_pred CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccC-----C-CCCcCCCCCCccEEEeccccccCCCCceEEE
Q 018172 126 GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYW-----P-QYTPITGAADHDIMLFTLSKCTGHAGSRIGW 198 (360)
Q Consensus 126 ~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~-----~-~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~ 198 (360)
++|+|+.-.-..|- ..+ +.++++|++-|.++++|.+|.. + +..|+ ...+++.+|.+|+| +|=|.|.
T Consensus 166 kPK~ii~G~SaY~r--~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~---~~AdvVTtTTHKTl--rGPrGG~ 238 (413)
T COG0112 166 KPKLIIAGGSAYSR--PIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPL---PHADVVTTTTHKTL--RGPRGGI 238 (413)
T ss_pred CCCEEEECcccccc--ccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCC---CccceEeCCcccCC--CCCCceE
Confidence 88999864432211 122 6788999999999999999973 1 22233 23789999999997 5667799
Q ss_pred EeecCHHHHHHHHHHHhhccccCChHHHHHHHH-HhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcc
Q 018172 199 ALVKDTEVARKMTRFIELGSIGVSKESQLRAAK-ILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEY 277 (360)
Q Consensus 199 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 277 (360)
|++.++++.+.+.+....+..+.+.+--.++.+ ++..... ..+++..+++.++.+.|.+.|.+.+ +.+..- +
T Consensus 239 Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~---p~fk~Ya~qVv~NAkaLAe~l~~~G-~~vvsG-g-- 311 (413)
T COG0112 239 ILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALE---PEFKEYAKQVVKNAKALAEALKERG-FKVVSG-G-- 311 (413)
T ss_pred EEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcC---hhHHHHHHHHHHHHHHHHHHHHHcC-CeEecC-C--
Confidence 998557999999886554444444333333333 3433222 5667788888888899999998874 444321 1
Q ss_pred cccccccCCCCCC-cccccCCc----hHHHHHHHHhhCeeeeC-CCCCC---C-CCCeEEEEe---c---CChHHHHHHH
Q 018172 278 CNFTGKFTNSHPG-FAWLESKE----DEDCEKLLRAERIMARG-GRRFG---A-DAKYARVSM---L---SREEIFNIFL 341 (360)
Q Consensus 278 ~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~l~~~gI~~~p-g~~f~---~-~~~~~R~s~---~---~~~e~~~~~~ 341 (360)
.-+ .+.+++.+ +..+...|.+.||.+.- +.+|+ + .+..+|+.. + ..++++++..
T Consensus 312 ----------TdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia 381 (413)
T COG0112 312 ----------TDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIA 381 (413)
T ss_pred ----------ccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHH
Confidence 111 34555542 38899999999999752 23333 2 356799975 1 2678999999
Q ss_pred HHHHHHHhc
Q 018172 342 ERLSAIQGG 350 (360)
Q Consensus 342 ~~l~~~~~~ 350 (360)
+-|.+++..
T Consensus 382 ~~I~~vl~~ 390 (413)
T COG0112 382 DLIADVLDG 390 (413)
T ss_pred HHHHHHHhc
Confidence 888888865
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.7e-11 Score=112.34 Aligned_cols=264 Identities=10% Similarity=0.037 Sum_probs=160.0
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHh-CC------------eeeeecCCc----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYL-RS------------GLYKWDGDA---- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~---- 118 (360)
+.|.+++++++++..+++.... .|...+.+|+.-..+|......+-.. |. .+..++.+.
T Consensus 110 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (445)
T PRK09221 110 DHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPE 189 (445)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccc
Confidence 5799999999999998886642 12111234887777777654332211 10 111222110
Q ss_pred ---------------ccccc-----C-CCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCc
Q 018172 119 ---------------NTFDK-----N-NGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTP 171 (360)
Q Consensus 119 ---------------~~~~~-----~-~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~ 171 (360)
+.++. + .+..+|++.......|...+ +.+.++|+++|+++|+||++.+. ....
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~ 269 (445)
T PRK09221 190 NAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA 269 (445)
T ss_pred cccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCch
Confidence 01111 1 34556666655666788765 46788999999999999998632 1111
Q ss_pred C--CCCC--CccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHH-------HHhhccccCChHHHHHHHHHhcccCCC
Q 018172 172 I--TGAA--DHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTR-------FIELGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 172 ~--~~~~--~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
. .... ..+ +.+++|.++ .| +.+|.+++ ++++++.+.. .....+++.|+++..++.+.|+.+.+.
T Consensus 270 ~~~~~~~gv~PD--i~~~gK~l~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~ 345 (445)
T PRK09221 270 AFAAERFGVTPD--IITFAKGLT-NGAIPMGAVIA-SDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREE 345 (445)
T ss_pred hhHHHhcCCCCC--EEEeccccc-cCcccceeeEE-cHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhc
Confidence 1 0111 113 457899997 55 67899888 7888887743 112346778899988888888866432
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--------hHHHHHHHHhhCe
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--------DEDCEKLLRAERI 311 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~gI 311 (360)
...++.+++-+++.+.|+++....... .+++.+.+..+.+.. ...+.+.+.++||
T Consensus 346 ------~l~~~~~~~g~~l~~~l~~l~~~~~v~-----------~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv 408 (445)
T PRK09221 346 ------DLFERAAELAPYFEDAVHSLKGLPHVI-----------DIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGL 408 (445)
T ss_pred ------cHHHHHHHHHHHHHHHHHhhccCCCEE-----------EEecCceEEEEEEecccccccchHHHHHHHHHHCCe
Confidence 334556666666667666552111000 011222222222211 1356677888999
Q ss_pred eeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHHhc
Q 018172 312 MARGGRRFGADAKYARVSM--LSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 312 ~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~ 350 (360)
.++++ .+.+||+. ..+++++++++++|.+++.+
T Consensus 409 ~~~~~------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 409 LVRYT------GDTIALSPPLIIEKAQIDELVDALGDALRA 443 (445)
T ss_pred EEeec------CCEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 99763 34799984 44999999999999999864
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-10 Score=110.83 Aligned_cols=268 Identities=14% Similarity=0.113 Sum_probs=159.0
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHh-CC------------eeeeecC------
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYL-RS------------GLYKWDG------ 116 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~------ 116 (360)
+.+.+++++++++..+++.... .|.+.+.+|+.-.-+|......+-.. +- .+..++.
T Consensus 105 ~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 184 (449)
T PRK07481 105 RRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRN 184 (449)
T ss_pred CEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCccccc
Confidence 4799999999999999887642 12111224887777777754332221 11 1111211
Q ss_pred -----Cccccc-------------c-CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCc
Q 018172 117 -----DANTFD-------------K-NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTP 171 (360)
Q Consensus 117 -----~~~~~~-------------~-~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~ 171 (360)
|.+.+. . .++.-+|++.-...-.|.+.+ +.+.++|+++|+++|.||++.+. ....
T Consensus 185 ~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 264 (449)
T PRK07481 185 PFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGS 264 (449)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCch
Confidence 111110 0 134556666555555677644 46788999999999999998853 2111
Q ss_pred CC--CCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHH-------HhhccccCChHHHHHHHHHhcccCCCch
Q 018172 172 IT--GAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRF-------IELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 172 ~~--~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
.. ...+-.-=+-+++|.++ .| +.+|.+++ .+++++.+... ....+++.|+++..++.+.|+.+.+.
T Consensus 265 ~~a~~~~gv~PDiv~~gKgl~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~-- 340 (449)
T PRK07481 265 WFGSRGWGVKPDIMCLAKGIT-SGYVPLGATMV-NARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVRE-- 340 (449)
T ss_pred hhHhhhcCCCCCEEEEeeccc-CCCcCceEEEE-cHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhh--
Confidence 11 11111111445689998 77 58999998 78888887532 23357788999999999988866543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC---------c---h--HHHHHHHH
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK---------E---D--EDCEKLLR 307 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~--~~~~~~l~ 307 (360)
..+++.++.=...++.+.+...+++.+.-. ++.+.++.+.+. + . ..+...+.
T Consensus 341 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v--------------rG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (449)
T PRK07481 341 DLPANAAKRGAYLLEGLQPLKERFELVGDV--------------RGKGLMLALDLVADKATREPIDPSKGYANAVADVAR 406 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCeEEE--------------eecceEEEEEecccccccCCCCchhHHHHHHHHHHH
Confidence 444444444333333333333334321111 122223333321 0 1 45667778
Q ss_pred hhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHHhch
Q 018172 308 AERIMARGGRRFGADAKYARVSM--LSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 308 ~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~~ 351 (360)
++||.+.+. + +.+||+. ..++++++++++++.+.+.+.
T Consensus 407 ~~Gvl~~~~---g---~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 407 ENGVLVRPS---G---TKIILSPPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred hCCeEEEec---C---CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 899999873 2 3588884 449999999999999999754
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.9e-11 Score=114.09 Aligned_cols=265 Identities=12% Similarity=0.084 Sum_probs=158.9
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHhCCe-------------eeeecCCc----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYLRSG-------------LYKWDGDA---- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~---- 118 (360)
+.+.+++++++++..+++.... .|.+.+.+|+.-.-+|......+...... +..++.+.
T Consensus 113 ~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (466)
T PRK07036 113 NHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRR 192 (466)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCccccc
Confidence 4799999999999998887521 12111124887777777765333222111 11111110
Q ss_pred -cc-----------------cc--cCCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcC
Q 018172 119 -NT-----------------FD--KNNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPI 172 (360)
Q Consensus 119 -~~-----------------~~--~~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~ 172 (360)
.+ +. ...+..+|++.....-.|...+ +.+.++|+++|+++|.||++.+. .....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 272 (466)
T PRK07036 193 PAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHF 272 (466)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchh
Confidence 00 10 0134556666655556677765 46788999999999999999743 22111
Q ss_pred CC---CCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHH-------HhhccccCChHHHHHHHHHhcccCCCch
Q 018172 173 TG---AADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRF-------IELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 173 ~~---~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
.. ..+..-=+.+++|.++ .| +.+|.+++ .+++.+.+... ....+++.|+++..++.+.|+.+.+.
T Consensus 273 ~~~~~~~gv~PDivt~gK~l~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~-- 348 (466)
T PRK07036 273 FASEAVFGIQPDIITFAKGLT-SGYQPLGAVII-SERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMERE-- 348 (466)
T ss_pred hhhhhhcCCCCCEEEEccccc-cCccccEEEEE-cHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 11 1111111457789998 78 48999998 88998887531 22347788999999999988876543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh---cCCcccCCCCCcccccccccCCCCCCcccccCCc--------------hHHHHH
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQ---SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--------------DEDCEK 304 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 304 (360)
+.+++ .+++-+++.+.|+. ++.+.- +.+.+.++.+.+.+ ...+..
T Consensus 349 ~l~~~----~~~~g~~l~~~L~~l~~~~~v~~--------------vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~ 410 (466)
T PRK07036 349 GLCEH----VREVGPYFEERLASLRELPLVGD--------------VRGDHLMACVECVADKGSKALLPEDIAIGQRIDR 410 (466)
T ss_pred CHHHH----HHHHHHHHHHHHHHhccCCCEEE--------------EEeeceEEEEEEccCccccCCCCchhHHHHHHHH
Confidence 33333 33444444444433 332111 11223333333311 145667
Q ss_pred HHHhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHHhchh
Q 018172 305 LLRAERIMARGGRRFGADAKYARVSM--LSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 305 ~l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
.+.++||.+.+. .+.+||+. ..++++++++++++.+++.+..
T Consensus 411 ~~~~~Gvl~~~~------~~~~~l~Ppl~it~~~id~~~~~l~~al~~~~ 454 (466)
T PRK07036 411 HCQERGLLVRPL------EHLCVLSPPLIITRAQIDEIVAILRAAIEETA 454 (466)
T ss_pred HHHHCCcEEeec------CCEEEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 788999999862 24678884 4499999999999999987653
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-10 Score=109.98 Aligned_cols=263 Identities=11% Similarity=0.008 Sum_probs=157.1
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHH-HhCC------------eeeeecCCc----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETD-YLRS------------GLYKWDGDA---- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~-~~g~------------~~~~~~~~~---- 118 (360)
+.+.+++++++++..+++.... .|...+.+|+.-..+|......+- ..|. .+..++...
T Consensus 107 ~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~ 186 (442)
T PRK13360 107 NHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLAR 186 (442)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhc
Confidence 4799999999999999886542 111111248888777777643221 1110 111222110
Q ss_pred ---------------ccccc------CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccC-CCCCc
Q 018172 119 ---------------NTFDK------NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYW-PQYTP 171 (360)
Q Consensus 119 ---------------~~~~~------~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~-~~~~~ 171 (360)
+.++. ..+..+|++.......|...+ +.+.++|+++|+++|+||++.+ +....
T Consensus 187 ~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~ 266 (442)
T PRK13360 187 NAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA 266 (442)
T ss_pred cccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc
Confidence 01110 134445666555556777755 4678899999999999999953 22111
Q ss_pred CC--CCC--CccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHH-------HhhccccCChHHHHHHHHHhcccCCC
Q 018172 172 IT--GAA--DHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRF-------IELGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 172 ~~--~~~--~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
.. ... ..+ +.+++|.++ .| +.+|.+++ ++++.+.+... ....+++.|+++..++.+.|+.+.+.
T Consensus 267 ~~a~~~~gv~PD--ivt~gK~l~-gG~~P~gav~~-~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~ 342 (442)
T PRK13360 267 PFAAQYFGVTPD--LLTCAKGLT-NGAIPMGAVFV-SSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYERE 342 (442)
T ss_pred chhhhhcCCCCc--eeeeeeccc-cCccceEEEEE-cHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 11 111 123 348899998 56 78999888 88888877531 12346778999999998888866543
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCCcccccccccCCCCCCcccccCC------c--hHHHHHHHHhhC
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFG-LPEYPLEYCNFTGKFTNSHPGFAWLESK------E--DEDCEKLLRAER 310 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~l~~~g 310 (360)
. ..++.+++-+++.+.|+++.... +.... +.+.+..+.+. . ...+...+.++|
T Consensus 343 --~----l~~~~~~~g~~l~~~l~~l~~~~~v~~vr------------G~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~G 404 (442)
T PRK13360 343 --G----LLTRAARLAPYWEDALHSLRDAPHVIDIR------------NLGLVGAVELAPRDGKPGKRAYEVFLKCFEKG 404 (442)
T ss_pred --C----HHHHHHHHHHHHHHHHHHhhcCCCeeeee------------ccceEEEEEEecCCCCcchhHHHHHHHHHHCC
Confidence 2 34455555555666665542111 11111 12212111111 1 135566778899
Q ss_pred eeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHHhc
Q 018172 311 IMARGGRRFGADAKYARVSM--LSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 311 I~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~ 350 (360)
|++.++ .+.+||+. ..+++++++++++|.+++.+
T Consensus 405 vl~~~~------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 440 (442)
T PRK13360 405 LMIRYT------GDILALSPPLIIEEAQIDELFDILAQALKE 440 (442)
T ss_pred cEEEec------CCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 999762 24799984 45999999999999998864
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-10 Score=111.02 Aligned_cols=279 Identities=12% Similarity=0.023 Sum_probs=157.1
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CCe-----------eeeecCCc--------
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RSG-----------LYKWDGDA-------- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~-----------~~~~~~~~-------- 118 (360)
+.|.++++++++...+++.... .|.. +|+.-..+|......+-.. +.. +..++.+.
T Consensus 113 ~~v~f~~SGsEAve~AlklAr~~tgr~---~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 189 (451)
T PRK06062 113 SKVFFTNGGADANEHAVRMARLHTGRP---KVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHA 189 (451)
T ss_pred CEEEEcCChHHHHHHHHHHHHHhhCCc---eEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCC
Confidence 4899999999999999887642 2322 4777777777665433322 211 11111000
Q ss_pred -c----------c----ccc--CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCC-CCcC--C
Q 018172 119 -N----------T----FDK--NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQ-YTPI--T 173 (360)
Q Consensus 119 -~----------~----~~~--~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~-~~~~--~ 173 (360)
+ . +.. ..+..+|++......-|.+.+ +.+.++|+++|+++|.||++.+.. .... .
T Consensus 190 ~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~ 269 (451)
T PRK06062 190 TTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAI 269 (451)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHH
Confidence 0 0 000 123455666544555677755 467789999999999999998421 1111 1
Q ss_pred CCCCccEEEeccccccCCCCc-eEEEEeecCHHHHHHHHHH--HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHH
Q 018172 174 GAADHDIMLFTLSKCTGHAGS-RIGWALVKDTEVARKMTRF--IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRL 250 (360)
Q Consensus 174 ~~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (360)
...+..-=+.+++|.++ .|. .+|.+++ .+++++.+... ....+++.|+.+..++.+.|+.+.+. ..+++.++.
T Consensus 270 ~~~gv~PDi~t~gK~lg-gG~~Pigav~~-~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~--~l~~~~~~~ 345 (451)
T PRK06062 270 EHFGVVPDLITFAKGVN-SGYVPLGGVAI-SEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEE--GIVENAARI 345 (451)
T ss_pred HhcCCCCCeeeechhhh-cCCcCcEEEEE-cHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhc--CHHHHHHHH
Confidence 11111111557899998 774 8999998 67888887532 23347788899999999988876543 333333322
Q ss_pred H-HHHHHHHHHHHHhcCCcccCCCCCcccccccccC-CCCCCcccccCCc-h-HHHHHHHHhhCeeeeCCCCCCCCCCeE
Q 018172 251 M-SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFT-NSHPGFAWLESKE-D-EDCEKLLRAERIMARGGRRFGADAKYA 326 (360)
Q Consensus 251 ~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~l~~~gI~~~pg~~f~~~~~~~ 326 (360)
= ...++.|.+...+++.+.-..-.|.+..+.-... .....+....... . ..+...|.++||++.+. .+.+
T Consensus 346 G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~------~~~l 419 (451)
T PRK06062 346 GAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN------GNRI 419 (451)
T ss_pred HHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec------CCEE
Confidence 2 1233333333333432211111222211100000 0000000000000 1 45677788999998651 3478
Q ss_pred EEEe--cCChHHHHHHHHHHHHHHhch
Q 018172 327 RVSM--LSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 327 R~s~--~~~~e~~~~~~~~l~~~~~~~ 351 (360)
||+. ..++++++++++++.+++.+.
T Consensus 420 rl~ppl~~t~~eid~~~~~l~~~l~~~ 446 (451)
T PRK06062 420 HVVPPCTVTEDEVREGLAILDAALAVA 446 (451)
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHHh
Confidence 9976 449999999999999999754
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-10 Score=111.65 Aligned_cols=298 Identities=16% Similarity=0.126 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHh-hcCCC----------CCCCCcEEEcCChHHHHHHHHHhhcC----C-C-----------------CC
Q 018172 39 PELAEAINNLHH-VVDNA----------VSDGRHIVIGTGSTQLYQAALYALSS----P-G-----------------GP 85 (360)
Q Consensus 39 ~~lr~~la~~~~-~~~~~----------~~~~~~i~~t~G~t~~l~~~~~~l~~----~-g-----------------d~ 85 (360)
.++++.+.+++. ..+.. ......-++|+|+|+++...+....+ + | ..
T Consensus 128 t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~ 207 (522)
T TIGR03799 128 TPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGY 207 (522)
T ss_pred HHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccC
Confidence 788998888754 22110 01112357789999998776655421 1 0 01
Q ss_pred CCceEEEeCCCCCCcHHHHHHhCC---eeeeecCCccc-ccc-----------CCCeeEE--EEcCCCCCCcccch-HHH
Q 018172 86 EPISVVSAAPYYSQYPAETDYLRS---GLYKWDGDANT-FDK-----------NNGAYIE--VVNSPNNPDGTIRE-AVL 147 (360)
Q Consensus 86 ~~~~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~-~~~-----------~~~~~~i--~~~~p~NPtG~~~~-~~~ 147 (360)
.+..|++++-.|.++..+++.+|. +++.++.|.++ ++. ..+++.+ +.+..++.||.+-+ +++
T Consensus 208 ~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eI 287 (522)
T TIGR03799 208 DGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEM 287 (522)
T ss_pred CceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHH
Confidence 124589999999999999999998 78888877542 221 1234444 33455668999988 788
Q ss_pred HHHhhhcCcEEEEeecccCCCCCc------CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh-----
Q 018172 148 AKVNRSAEGKLIHDLAYYWPQYTP------ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL----- 216 (360)
Q Consensus 148 ~~~~~~~~~~li~D~ay~~~~~~~------~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~----- 216 (360)
.++|+++|+|+++|.+|+...... +.+....+.+..|.+|.+. ....+|.++.++++..+.+.....+
T Consensus 288 a~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~-~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~ 366 (522)
T TIGR03799 288 ADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLY-VPMGAGMVLFKDPALMSAIEHHAEYILRKG 366 (522)
T ss_pred HHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCC-cCcccEEEEEeCHHHHHHhccCcchhcCCC
Confidence 889999999999999998643222 2233467889999999544 3345888887677766655431000
Q ss_pred --------ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC-CcccccccccCCC
Q 018172 217 --------GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYP-LEYCNFTGKFTNS 287 (360)
Q Consensus 217 --------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~ 287 (360)
...+-+..+ ..+..+++.+.. ..++++.++..++.+++.+.|++.+++++..+. -...+|-. .+.
T Consensus 367 ~~d~~~~~legsR~~~a-l~lw~aL~~lG~---~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~--~p~ 440 (522)
T TIGR03799 367 SKDLGSHTLEGSRPGMA-MLVYAGLHIIGR---KGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRY--VPE 440 (522)
T ss_pred CCccccceeecCcchHH-HHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEE--eCh
Confidence 011222222 234555654422 678899999999999999999999888876543 23333320 000
Q ss_pred CCCcccc--------cCC---ch--HHHHHHHHhhCeeeeCCC-----CC-CCCCCeEEEEecC---ChHHHHHHHHH
Q 018172 288 HPGFAWL--------ESK---ED--EDCEKLLRAERIMARGGR-----RF-GADAKYARVSMLS---REEIFNIFLER 343 (360)
Q Consensus 288 ~~~~~~~--------~~~---~~--~~~~~~l~~~gI~~~pg~-----~f-~~~~~~~R~s~~~---~~e~~~~~~~~ 343 (360)
...-... ... +. ..+.+.+.+.|....... .+ +.+...+|+++.. ++++++.+++.
T Consensus 441 ~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 441 EVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred hhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHH
Confidence 0000000 000 11 456667777777654321 12 2123469999866 67888776653
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.39 E-value=9e-11 Score=112.60 Aligned_cols=278 Identities=13% Similarity=0.065 Sum_probs=157.8
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHH-Hh-------------CC------eeeeecC-C
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETD-YL-------------RS------GLYKWDG-D 117 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~-~~-------------g~------~~~~~~~-~ 117 (360)
+.+.++++++|+...+++.... .|.. +|+.-.-+|......+. .. |. .+..++- |
T Consensus 156 ~~v~f~~SGsEA~e~AlklAR~~tgr~---~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd 232 (474)
T PLN02482 156 EMVRFVNSGTEACMGVLRLARAYTGRE---KIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYND 232 (474)
T ss_pred CEEEEeCChHHHHHHHHHHHHHhcCCC---EEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCC
Confidence 5899999999999998887642 2322 48877777777543211 10 11 0111111 2
Q ss_pred cccccc----C-CCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCcCC--CCCCccEEEecc
Q 018172 118 ANTFDK----N-NGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTPIT--GAADHDIMLFTL 185 (360)
Q Consensus 118 ~~~~~~----~-~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~~~--~~~~~~i~~~S~ 185 (360)
.+.++. . .+..+|++.......|.+.+ +.+.++|+++|+++|+||++.+....... ...+-.-=+.++
T Consensus 233 ~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~~ga~~~~gv~PDi~t~ 312 (474)
T PLN02482 233 LEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQEYFGITPDLTTL 312 (474)
T ss_pred hHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCcchHhHHhCCCCCEEEe
Confidence 222211 1 34555666555556787765 35788999999999999998642111110 111111113578
Q ss_pred ccccCCCCceEEEEeecCHHHHHHHHHH---HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARKMTRF---IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVI 262 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (360)
+|.+| .|+.+|.+++ ..++++.+... ....+++.|+++..++.+.|+.+.+. ...++..+.-...++.+.+..
T Consensus 313 gK~lg-gG~Pigav~g-~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~--~~~~~~~~~g~~l~~~L~~l~ 388 (474)
T PLN02482 313 GKVIG-GGLPVGAYGG-RREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQP--GTYEYLDKITKKLIQGILEAG 388 (474)
T ss_pred cchhh-CCCceEEEEE-cHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHHHH
Confidence 99999 8999999987 89999888532 22356678899988888888876543 444444444444444444443
Q ss_pred HhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHH
Q 018172 263 RQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNI 339 (360)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~ 339 (360)
.+++...+....+++..+.- ......+|--....+. ..+.+.|.++||++.|.. +. .++ +++..+++++++
T Consensus 389 ~~~g~~~~~~~v~g~~gi~f-~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~-~~--~~~--psl~ht~~dId~ 462 (474)
T PLN02482 389 KKAGHEMCGGYISGMFGFFF-TEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQ-FE--AGF--TSLAHTEEDIDF 462 (474)
T ss_pred HhcCCCEEEcccceEEEEEE-ecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccC-CC--CCc--CCCCCCHHHHHH
Confidence 44321111111111111000 0000000000001121 456777788999998732 11 112 566669999999
Q ss_pred HHHHHHHHHhc
Q 018172 340 FLERLSAIQGG 350 (360)
Q Consensus 340 ~~~~l~~~~~~ 350 (360)
+++++.+++.+
T Consensus 463 ~l~al~~~l~~ 473 (474)
T PLN02482 463 TIAAAERVLAR 473 (474)
T ss_pred HHHHHHHHHHh
Confidence 99999998854
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-10 Score=111.97 Aligned_cols=267 Identities=14% Similarity=0.040 Sum_probs=159.1
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHh-CCe------------eeeecCCc----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYL-RSG------------LYKWDGDA---- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~~---- 118 (360)
+.+.+++++++++..+++.... .|.+.+.+|+.-..+|......+-.. |.. +..++...
T Consensus 108 ~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~ 187 (466)
T PRK07030 108 SRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLR 187 (466)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCcccc
Confidence 4899999999999999887632 12221234888887777765333322 211 11111110
Q ss_pred -----------------c-cccc-CCCeeEEEEcC-CCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCC-CCcC
Q 018172 119 -----------------N-TFDK-NNGAYIEVVNS-PNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQ-YTPI 172 (360)
Q Consensus 119 -----------------~-~~~~-~~~~~~i~~~~-p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~-~~~~ 172 (360)
+ .+.. ..+.-+|++.- ...-.|...+ +.+.++|+++|+++|.||++.+.. ....
T Consensus 188 ~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~ 267 (466)
T PRK07030 188 PEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTM 267 (466)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccc
Confidence 0 0111 13444555543 2455677654 467889999999999999987432 2111
Q ss_pred C--CCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHH-------HHhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 173 T--GAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTR-------FIELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 173 ~--~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
. ...+-.-=+-+++|.++ .| +.+|.+++ .+++.+.+.. .....+++.|+++..++.+.|+.+.+. .
T Consensus 268 ~a~~~~gv~PDiv~~gKgl~-gG~~Pi~av~~-~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~--~ 343 (466)
T PRK07030 268 FACEQAGIRPDFLCLSKALT-GGYLPLAAVLT-TDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQD--N 343 (466)
T ss_pred hHHHhcCCCCCEEeeehhcc-CCcccceEEEe-cHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhc--C
Confidence 1 11121112345589998 78 49999998 8898887742 223467788999999999999877553 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-----------ch---HHHHHHHHh
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-----------ED---EDCEKLLRA 308 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~---~~~~~~l~~ 308 (360)
..++.++.=...++.+.+ +.+++.+.-. ++.+.++.+.+. +. ..+...+.+
T Consensus 344 l~~~~~~~G~~l~~~L~~-l~~~~~v~~v--------------rG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~ 408 (466)
T PRK07030 344 VIENNRALARRMAEATAH-LADHPHVAEV--------------RQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALE 408 (466)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCCCEEEe--------------EeceeEEEEEeccCccccccCcchhHHHHHHHHHHHH
Confidence 444444443333333332 2333321111 122223333321 11 356677888
Q ss_pred hCeeeeCCCCCCCCCCeEEEE--ecCChHHHHHHHHHHHHHHhch
Q 018172 309 ERIMARGGRRFGADAKYARVS--MLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 309 ~gI~~~pg~~f~~~~~~~R~s--~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
+|+.+.+. .+.+||. +..++++++++++++.+.+++.
T Consensus 409 ~Gvl~~~~------g~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 409 RGALLRPL------GSVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred CCeEEEec------CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 99999762 2478885 3449999999999999999875
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.6e-11 Score=111.43 Aligned_cols=264 Identities=11% Similarity=0.044 Sum_probs=159.2
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHH-HHHhCC-------------eeeeecCC----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAE-TDYLRS-------------GLYKWDGD---- 117 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~-~~~~g~-------------~~~~~~~~---- 117 (360)
+.+.+++++++++..+++.... .|.+.+.+|+.-..+|...... +...|- .+..++.+
T Consensus 105 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 184 (429)
T PRK06173 105 NKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKF 184 (429)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCccc
Confidence 5899999999999998887642 1211123588888877765322 211110 01112111
Q ss_pred --------c----ccccc-CCCeeEEEEcCC-CCCCcccch-----HHHHHHhhhcCcEEEEeecccCCC-CCcC--CC-
Q 018172 118 --------A----NTFDK-NNGAYIEVVNSP-NNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQ-YTPI--TG- 174 (360)
Q Consensus 118 --------~----~~~~~-~~~~~~i~~~~p-~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~-~~~~--~~- 174 (360)
. +.+.. ..+..+|++.-. ..-.|...+ +.+.++|+++|+++|+||++.+.. .... ..
T Consensus 185 ~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~ 264 (429)
T PRK06173 185 GEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEH 264 (429)
T ss_pred chhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHh
Confidence 0 01111 234555555542 565677644 467789999999999999996421 1111 11
Q ss_pred -CCCccEEEeccccccCCCCc-eEEEEeecCHHHHHHHHH-----HHhhccccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 175 -AADHDIMLFTLSKCTGHAGS-RIGWALVKDTEVARKMTR-----FIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 175 -~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
....+++ +++|.++ .|+ .++.++. .+++.+.+.. +....+++.|+++..++.+.|+.+.+. . .
T Consensus 265 ~gv~PDiv--~~gK~l~-gG~~p~~a~~~-~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~--~----~ 334 (429)
T PRK06173 265 AGVVPDIM--CIGKALT-GGYLTLSATIT-TEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLES--P----W 334 (429)
T ss_pred cCCCCCEE--Eeehhhh-CCccccceEEe-cHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC--C----H
Confidence 1123444 4899997 774 7888887 7888888753 122345678889998888888866443 2 3
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCC
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAK 324 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~ 324 (360)
++.++++-+++.+.|++........ .+++.+.++.+.+.+. ..+.+.|.++||.+.+. .+
T Consensus 335 ~~~~~~~g~~l~~~L~~~~~~~~v~-----------~vRg~Gl~~~iel~~~~~~~~i~~~l~e~Gi~v~~~------g~ 397 (429)
T PRK06173 335 QQNIQRIEAQLKQELAPAAEFDSVA-----------EVRVLGAIGVVEMKEPVNMATLQPRFVEHGIWVRPF------GK 397 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCee-----------eeeccceEEEEEeCCcccHHHHHHHHHHCCeEEEec------CC
Confidence 4445555555666665431111110 1123333444555432 56778888999999873 24
Q ss_pred eEEEEe--cCChHHHHHHHHHHHHHHhc
Q 018172 325 YARVSM--LSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 325 ~~R~s~--~~~~e~~~~~~~~l~~~~~~ 350 (360)
.+||.. ..+++++++++++|.+.+.+
T Consensus 398 ~l~~~Ppl~it~~ei~~~~~~l~~~l~~ 425 (429)
T PRK06173 398 LVYIMPPFIISPDELSQLTSGLLRVLKQ 425 (429)
T ss_pred EEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 899965 34999999999999999865
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-10 Score=109.48 Aligned_cols=274 Identities=11% Similarity=0.036 Sum_probs=160.8
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHH-hCCe------------eeeecCC-----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDY-LRSG------------LYKWDGD----- 117 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~-~g~~------------~~~~~~~----- 117 (360)
+.+++++++++++..+++.... .|.+.+.+|+.-+.+|......+-. .+.. +..++..
T Consensus 92 ~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 171 (447)
T PRK06917 92 NWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRC 171 (447)
T ss_pred CEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCccccc
Confidence 4789999999999999887731 1222123488877777776544332 2211 0111100
Q ss_pred ---c----------ccc----cc--CCCeeEEEEcCCCC-CCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCc
Q 018172 118 ---A----------NTF----DK--NNGAYIEVVNSPNN-PDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTP 171 (360)
Q Consensus 118 ---~----------~~~----~~--~~~~~~i~~~~p~N-PtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~ 171 (360)
. +.+ .. ..+.-+|++.-... --|.+.+ +.+.++|+++|+++|.||++.+. ....
T Consensus 172 ~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~ 251 (447)
T PRK06917 172 PVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGA 251 (447)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccc
Confidence 0 000 10 12355555543332 3345544 46778999999999999998742 1111
Q ss_pred CC--CCC--CccEEEeccccccCCCCc-eEEEEeecCHHHHHHHHHH----HhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 172 IT--GAA--DHDIMLFTLSKCTGHAGS-RIGWALVKDTEVARKMTRF----IELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 172 ~~--~~~--~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
.. ... ..+ +.+++|.++ .|. .+|.+++ .+++++.+... ....+++.|+++..++.+.++.+.+. .
T Consensus 252 ~~a~~~~gv~PD--i~~~gK~l~-~G~~Pi~a~~~-~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~--~ 325 (447)
T PRK06917 252 MFAMEHWGVEPD--IMTLGKGLG-AGYTPIAATVV-SDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKH--N 325 (447)
T ss_pred hhhHHhcCCCCC--EEEeeehhc-cCCcceEEEEE-cHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHC--C
Confidence 11 111 123 357799998 785 8999998 78888887532 12346788999999999988866443 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-----------c---hHHHHHHHHh
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-----------E---DEDCEKLLRA 308 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~ 308 (360)
.+++.++.-...++.|.+...+++.+.-.. +.+.++.+.+. + ...+...+.+
T Consensus 326 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr--------------G~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (447)
T PRK06917 326 LPEKAAEKGEYLIKGLQKVQQQSTIIGDVR--------------GKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAK 391 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEe--------------ecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHh
Confidence 444444444444444433333343222111 22223222221 1 1456677889
Q ss_pred hCeeeeCCCC-C-CCCCCeEEEEec--CChHHHHHHHHHHHHHHhchhc
Q 018172 309 ERIMARGGRR-F-GADAKYARVSML--SREEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 309 ~gI~~~pg~~-f-~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~~~~ 353 (360)
+||.+.|... . +...+.+|++.. .++++++++++++.+++.+...
T Consensus 392 ~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 440 (447)
T PRK06917 392 NGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQ 440 (447)
T ss_pred CCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999987421 1 222468999754 5999999999999999987543
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-10 Score=111.20 Aligned_cols=263 Identities=13% Similarity=0.017 Sum_probs=153.3
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHH-HHHHhCCe------------eeeecCC------cc
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPA-ETDYLRSG------------LYKWDGD------AN 119 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~-~~~~~g~~------------~~~~~~~------~~ 119 (360)
+.+++++++++++..+++.... .|.. +|+.-..+|..... .+...|.. +..++.. .+
T Consensus 131 ~~v~f~~sGseAve~AlklAr~~tgr~---~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (459)
T PRK06082 131 NRVLFAPGGTSAIGMALKLARHITGNF---KVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFP 207 (459)
T ss_pred CEEEECCCcHHHHHHHHHHHHHhcCCC---EEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccC
Confidence 4799999999999998887642 2222 37766666666543 33222211 1111110 00
Q ss_pred -----------ccc----cCCCeeEEEEcCCCCCCccc-ch----HHHHHHhhhcCcEEEEeecccCCCCCc-C-C-C--
Q 018172 120 -----------TFD----KNNGAYIEVVNSPNNPDGTI-RE----AVLAKVNRSAEGKLIHDLAYYWPQYTP-I-T-G-- 174 (360)
Q Consensus 120 -----------~~~----~~~~~~~i~~~~p~NPtG~~-~~----~~~~~~~~~~~~~li~D~ay~~~~~~~-~-~-~-- 174 (360)
.++ ...+..+|++.-..+. |.. .+ +.+.++|+++|+++|.||++.+..... . . .
T Consensus 208 ~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~-g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~ 286 (459)
T PRK06082 208 DADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNT-DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAY 286 (459)
T ss_pred ChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCC-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhh
Confidence 011 1124455665544443 443 33 467889999999999999988421111 1 0 1
Q ss_pred CCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHH
Q 018172 175 AADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 175 ~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
.-..+++ +++|.++ .| +.+|.+++ .+++.+.........+++.|+++..++.+.|+.+.+. ...++.++.-..
T Consensus 287 gv~PDiv--~~gKgl~-gG~~P~~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~--~l~~~~~~~g~~ 360 (459)
T PRK06082 287 GIEPDIL--CIGKGLG-GGLVPIAAMIT-KDKYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQE--GLLEKVKADSQF 360 (459)
T ss_pred CCCCCEE--Eeccccc-CCCCcceEEEE-cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 1123344 4899998 67 58999988 6666544321111247788999999998888866543 444444444444
Q ss_pred HHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--------c---hHHHHHHHHhhCeeeeCCCCCCCC
Q 018172 254 RWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------E---DEDCEKLLRAERIMARGGRRFGAD 322 (360)
Q Consensus 254 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~l~~~gI~~~pg~~f~~~ 322 (360)
.++.|.+...+++.+.-. ++.+.++.+.+. + ...+...+.++||.+.+. .
T Consensus 361 l~~~L~~l~~~~~~i~~v--------------rG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~-----~ 421 (459)
T PRK06082 361 MRERLLEMKAKYPLIGDV--------------RGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVS-----Q 421 (459)
T ss_pred HHHHHHHHHhhCCCeeee--------------eeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEec-----C
Confidence 444444433344322211 123333333331 1 134556677899998762 1
Q ss_pred CCeEEEEe--cCChHHHHHHHHHHHHHHhch
Q 018172 323 AKYARVSM--LSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 323 ~~~~R~s~--~~~~e~~~~~~~~l~~~~~~~ 351 (360)
.+.+|++. ..++++++++++++.+.+.+.
T Consensus 422 ~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~ 452 (459)
T PRK06082 422 GNVIQLSPPLIITREELTQALAILEEAIAKI 452 (459)
T ss_pred CCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence 36899985 449999999999999998764
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-10 Score=106.75 Aligned_cols=281 Identities=13% Similarity=0.026 Sum_probs=169.3
Q ss_pred CcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH-hCCeee--e------ec---------CCccc-
Q 018172 60 RHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY-LRSGLY--K------WD---------GDANT- 120 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~-~g~~~~--~------~~---------~~~~~- 120 (360)
+.|-+++++|||...+++.... -+.+.+|+.-+-||......+-. .|.-+- . ++ ++.|.
T Consensus 110 e~vrfvnSGTEAtmsAiRlARa--~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~ 187 (432)
T COG0001 110 EKVRFVNSGTEATMSAIRLARA--YTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDL 187 (432)
T ss_pred cEEEEecchhHHHHHHHHHHHH--hhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCH
Confidence 5789999999998888776631 11112388888888877655433 331111 0 11 11122
Q ss_pred --ccc-----CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCC--cCCCCCCccEEEeccc
Q 018172 121 --FDK-----NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYT--PITGAADHDIMLFTLS 186 (360)
Q Consensus 121 --~~~-----~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~--~~~~~~~~~i~~~S~s 186 (360)
++. .++.-+|++.-.-..-|.+.+ +.++++|+++|+++|.||+....... ......+-.-=+.++.
T Consensus 188 ~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlttlG 267 (432)
T COG0001 188 EALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLTTLG 267 (432)
T ss_pred HHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchhhhh
Confidence 111 135556666433334788766 46789999999999999998753322 2223333333467889
Q ss_pred cccCCCCceEEEEeecCHHHHHHHHH---HHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 018172 187 KCTGHAGSRIGWALVKDTEVARKMTR---FIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIR 263 (360)
Q Consensus 187 K~~~~~G~r~G~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 263 (360)
|+.| .|+.+|.+.+ ..++++.+.. ..+.++++.|+++..+..+.++.+.+. +...+++.+.-.+.++-+.+.+.
T Consensus 268 KiIG-GGlP~ga~gG-r~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~-~~~y~~l~~~~~~L~~gl~~~~~ 344 (432)
T COG0001 268 KIIG-GGLPIGAFGG-RAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTE-EGVYERLDALGERLAEGLRAAAE 344 (432)
T ss_pred hhhc-CCcceeeecc-HHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999887 7999997743 445578889999999999988866542 02344444444444444555555
Q ss_pred hcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHH
Q 018172 264 QSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIF 340 (360)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~ 340 (360)
+++......-.+++..+.-... ...+|.-..-.+. ..+...|.++||++.|+. |. ..=+|.+.++|++++.
T Consensus 345 ~~g~~~~v~~~gsm~~i~F~~~-~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~-~e----a~flS~ahte~di~~~ 418 (432)
T COG0001 345 RHGIPLTVNRVGSMFGIFFTEE-GVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQ-FE----AGFLSTAHTEEDIDRT 418 (432)
T ss_pred HhCCCeEEeeecceEEEEecCC-CCCCHHHHHhhchHHHHHHHHHHHhCCcccCCcc-cc----ceeeecccCHHHHHHH
Confidence 5543233333444433210000 0111111111111 334558889999999854 32 1226776799999999
Q ss_pred HHHHHHHHhch
Q 018172 341 LERLSAIQGGS 351 (360)
Q Consensus 341 ~~~l~~~~~~~ 351 (360)
++++.+++++.
T Consensus 419 ~~a~~~~~~~~ 429 (432)
T COG0001 419 LEAADEAFKEL 429 (432)
T ss_pred HHHHHHHHHHh
Confidence 99999888754
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-10 Score=118.01 Aligned_cols=265 Identities=15% Similarity=0.141 Sum_probs=160.9
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CC-----e--------eeeecCC------c
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RS-----G--------LYKWDGD------A 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~-----~--------~~~~~~~------~ 118 (360)
+.+++++++++++..+++.... .|.. +|+..+-+|......+... +. . +..++.. .
T Consensus 642 ~~v~f~~SGsEA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~ 718 (972)
T PRK06149 642 DTVFLVNSGSEANDLAIRLAWAASGRR---DVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRF 718 (972)
T ss_pred CEEEEeCCchHHHHHHHHHHHHhcCCC---eEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcC
Confidence 4799999999999999885421 1322 3777777777544222111 10 0 1111110 0
Q ss_pred ----------cc----cc---c-CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccC-CCCCc-CC
Q 018172 119 ----------NT----FD---K-NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYW-PQYTP-IT 173 (360)
Q Consensus 119 ----------~~----~~---~-~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~-~~~~~-~~ 173 (360)
+. +. . ..+..+|++.......|.+.+ +.+.++|+++|+++|.||++.+ +.... ..
T Consensus 719 ~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~ 798 (972)
T PRK06149 719 RGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFW 798 (972)
T ss_pred CCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccch
Confidence 00 00 0 124445555444445676644 4677899999999999999963 22221 10
Q ss_pred --CCC--CccEEEeccccccCCCCceEEEEeecCHHHHHHHHHH-HhhccccCChHHHHHHHHHhcccCCCchhHHHHHH
Q 018172 174 --GAA--DHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRF-IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGR 248 (360)
Q Consensus 174 --~~~--~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (360)
... .-+| -+++|.+| .|+.+|.+++ .+++++.+... ....+.+.|+.+..++.+.|+.+.+. ...++.+
T Consensus 799 a~e~~gv~PDi--vt~gK~lg-~G~Pl~av~~-~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e--~l~~~~~ 872 (972)
T PRK06149 799 GFEQQGVVPDI--ITMAKGMG-NGHPLGAVIT-RREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREE--KLQENAR 872 (972)
T ss_pred hhhhcCCCCCE--EEeccccc-CCeeeEEEEE-cHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhc--CHHHHHH
Confidence 111 2233 38899999 8899999999 88998887641 11245688999999999999877553 4444444
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--------ch---HHHHHHHHhhCeeeeCCC
Q 018172 249 RLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------ED---EDCEKLLRAERIMARGGR 317 (360)
Q Consensus 249 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~l~~~gI~~~pg~ 317 (360)
+.=...++.|.+...+++.+... .+.|.|+.+.+. +. ..+.+.|.++||.+.+.
T Consensus 873 ~~G~~l~~~L~~l~~~~~~i~~v--------------rG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~- 937 (972)
T PRK06149 873 RVGDHLKARLEALADRHPLIGAV--------------HGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPT- 937 (972)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEE--------------eecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeec-
Confidence 44444444444444445432222 233334444331 11 45677888899999873
Q ss_pred CCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhc
Q 018172 318 RFGADAKYARVSML--SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 318 ~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~ 350 (360)
+...+.+||... .++++++++++++.+++.+
T Consensus 938 --g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 938 --GDHLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred --CCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 322468998653 5999999999999999864
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-10 Score=109.26 Aligned_cols=286 Identities=11% Similarity=0.014 Sum_probs=168.8
Q ss_pred cHHHHHHHHHHHhhcCCC-------------------C--CCCCcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEE
Q 018172 38 VPELAEAINNLHHVVDNA-------------------V--SDGRHIVIGTGSTQLYQAALYALSS----PGGPEPISVVS 92 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~-------------------~--~~~~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~ 92 (360)
.+++.+++++.+...+.. . ..-+.+++++++++++..+++.... +|.+.+.+|+.
T Consensus 63 ~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~ 142 (427)
T TIGR00508 63 HPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLT 142 (427)
T ss_pred CHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEE
Confidence 488888888766543211 0 1114799999999999988886542 12111224888
Q ss_pred eCCCCCCcHHHHHHh-CCe-------------eeeecCCc------------cc----ccc-CCCeeEEEEcCC-CCCCc
Q 018172 93 AAPYYSQYPAETDYL-RSG-------------LYKWDGDA------------NT----FDK-NNGAYIEVVNSP-NNPDG 140 (360)
Q Consensus 93 ~~p~~~~~~~~~~~~-g~~-------------~~~~~~~~------------~~----~~~-~~~~~~i~~~~p-~NPtG 140 (360)
-+-+|......+-.+ +-. ....+... +. +.. ..+..+|++... ++--|
T Consensus 143 ~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG 222 (427)
T TIGR00508 143 IRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGG 222 (427)
T ss_pred EcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCC
Confidence 877777654332221 211 00111000 00 111 123444555432 44456
Q ss_pred ccch-----HHHHHHhhhcCcEEEEeecccCCCCCc-C--C--CCCCccEEEeccccccCCCCc-eEEEEeecCHHHHHH
Q 018172 141 TIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTP-I--T--GAADHDIMLFTLSKCTGHAGS-RIGWALVKDTEVARK 209 (360)
Q Consensus 141 ~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~-~--~--~~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~ 209 (360)
...+ +.+.++|+++|+++|+||++.+..... . . .....+++ +++|.++ .|+ .++.++. ++++.+.
T Consensus 223 ~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~--~~gK~l~-gG~~p~~a~~~-~~~~~~~ 298 (427)
T TIGR00508 223 MRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDIL--CVGKALT-GGYMTLSATVT-TDKVAQT 298 (427)
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEE--Eechhhh-cCcccceEEEE-cHHHHHH
Confidence 5543 467789999999999999986421111 0 1 11123344 4799997 775 6787877 7888888
Q ss_pred HHHHH-----hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCccccccccc
Q 018172 210 MTRFI-----ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKF 284 (360)
Q Consensus 210 l~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 284 (360)
+.... ...+++.|+++..++.+.++.+.+. + ..++++++-+++.+.|+++....... .
T Consensus 299 ~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~--~----~~~~~~~~~~~l~~~L~~l~~~~~i~-----------~ 361 (427)
T TIGR00508 299 ISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEG--E----WQKQVSAIENQLKRELSPLRKNPVVK-----------D 361 (427)
T ss_pred HhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC--C----HHHHHHHHHHHHHHHHHHhhcCCCEE-----------e
Confidence 86421 2345567889998988888866443 3 34556666666666666653211000 0
Q ss_pred CCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhc
Q 018172 285 TNSHPGFAWLESKE---DEDCEKLLRAERIMARGGRRFGADAKYARVSML--SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 285 ~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~ 350 (360)
+.+.+.++.+.+.+ ...+.+.|.++||.+.+. .+.+|++.. .++++++++++++.+.+.+
T Consensus 362 vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gv~~~~~------~~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 362 VRVLGAIGVVEMYKPVNVEELQKKFVEQGVWIRPF------GKLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred EeccccEEEEEECCccCHHHHHHHHHHCCeEEEec------CCEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 11223344444432 266778888999999762 236899765 5999999999999999864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-10 Score=114.24 Aligned_cols=288 Identities=15% Similarity=0.064 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEc-CChHHHHHHHHHhh----cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIG-TGSTQLYQAALYAL----SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYK 113 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t-~G~t~~l~~~~~~l----~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~ 113 (360)
.++.+.+++..|. + .+-+- ++++++....++++ ..+|+..+.+++++.-.|......+...|++++.
T Consensus 546 ~elq~~l~eLtGm------d--~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~~~GieVv~ 617 (954)
T PRK12566 546 DELEAWLCAITGF------D--AICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQMAGMRVVI 617 (954)
T ss_pred HHHHHHHHHHHCC------C--eEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHHHCCCEEEE
Confidence 4556666666664 2 23333 45666655555554 3345443346999998887777778889999999
Q ss_pred ecCCccc-ccc----------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-CCcCCCCCCccE
Q 018172 114 WDGDANT-FDK----------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ-YTPITGAADHDI 180 (360)
Q Consensus 114 ~~~~~~~-~~~----------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~-~~~~~~~~~~~i 180 (360)
++.|.++ ++. ++++.+|.+++|++-.+...+ +++.++++++|+++++|.++.... ....+...+.++
T Consensus 618 Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi 697 (954)
T PRK12566 618 VECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADV 697 (954)
T ss_pred eccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCE
Confidence 9987443 211 257778888898875544333 567777777999999999986422 233346889999
Q ss_pred EEeccccccCCC----CceEEEEeecCHHHHHHHHHHH--h-------hcccc----CChHHHHHHHHHhcccCCCchhH
Q 018172 181 MLFTLSKCTGHA----GSRIGWALVKDTEVARKMTRFI--E-------LGSIG----VSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 181 ~~~S~sK~~~~~----G~r~G~~~~~~~~~~~~l~~~~--~-------~~~~~----~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
++++++|.|+.| |.-+|.+.. ...+...+...- . ....+ .+.....++...+..+ +. +
T Consensus 698 ~~~s~HKtf~~P~G~GGP~vG~iav-~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~l-G~--e- 772 (954)
T PRK12566 698 SHMNLHKTFCIPHGGGGPGMGPIGV-RAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMM-GP--Q- 772 (954)
T ss_pred EEecCCcccCcCccCCCCccchhhh-hhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHH-CH--H-
Confidence 999999988632 222343333 233333333210 0 01111 1122233344444432 21 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCc-ccccccccCCCCCCcccccCC-----chHHHHHHHHhhCeeeeCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLE-YCNFTGKFTNSHPGFAWLESK-----EDEDCEKLLRAERIMARGGR 317 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gI~~~pg~ 317 (360)
+.+....-..+..++.+.|.+.-.+.+..+.+. +..|. +.+..++ +.+++.+.|.++||...- .
T Consensus 773 Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfi---------i~~~~l~~~~g~~~~dvakRL~d~Gihapt-~ 842 (954)
T PRK12566 773 LADASEVAILSANYLANQLGGAFPVLYRGRNERVAHECI---------LDLRPLKAQTGISEEDVAKRLMDYGFHAPT-M 842 (954)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEE---------EEccccccccCCCHHHHHHHHHHCCcEEeE-E
Confidence 666666667788899999976533333211111 11111 1122222 126677777799997543 3
Q ss_pred CCCCCCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 318 RFGADAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 318 ~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
.|. ..+++|++.+- +++|+|++++++..+.++
T Consensus 843 ~fP-v~~~LmIepTE~eskeEIDrf~eAL~~I~~e 876 (954)
T PRK12566 843 SFP-VPGTLMVEPTESESKAELDRFVEAMLSIRAE 876 (954)
T ss_pred eec-cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence 444 37799999855 899999999999999876
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-10 Score=108.67 Aligned_cols=274 Identities=14% Similarity=0.082 Sum_probs=162.2
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHh-CCe------------eeeecCC-----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYL-RSG------------LYKWDGD----- 117 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~----- 117 (360)
+.+++++++++++..+++.... .|.+.+.+|+.-+.+|......+-.. |-. +..++..
T Consensus 91 ~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~ 170 (443)
T PRK07483 91 EHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYRE 170 (443)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccc
Confidence 4899999999999998887642 12222235777777777664332222 110 1111110
Q ss_pred c--------------cccc----c--CCCeeEEEEcCCCC-CCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCC
Q 018172 118 A--------------NTFD----K--NNGAYIEVVNSPNN-PDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYT 170 (360)
Q Consensus 118 ~--------------~~~~----~--~~~~~~i~~~~p~N-PtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~ 170 (360)
. +.++ . .++..+|++.-... --|.+.+ +.++++|+++|+++|.||++.+. ...
T Consensus 171 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG 250 (443)
T PRK07483 171 QRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTG 250 (443)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCc
Confidence 0 1111 0 13445555544332 2365544 46778999999999999998843 211
Q ss_pred cCC--CCCCccEEEeccccccCCCCc-eEEEEeecCHHHHHHHHHH----HhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 171 PIT--GAADHDIMLFTLSKCTGHAGS-RIGWALVKDTEVARKMTRF----IELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 171 ~~~--~~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
... ...+-.-=+-+++|.++ .|+ .+|.+++ .+++.+.+... ....+++.|+++..++.+.++.+.+. ..
T Consensus 251 ~~~a~~~~gv~PDiv~~gK~l~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~--~l 326 (443)
T PRK07483 251 TLFACEEDGVAPDLVTIAKGLG-AGYQPIGAVLA-SDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAED--GL 326 (443)
T ss_pred HHHHHhhcCCCCCeeeehhhhc-cCccccEEEEE-cHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhc--CH
Confidence 111 11111111445689998 785 8999998 78888887532 23357789999999999999877554 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-----------c--h-HHHHHHHHhh
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-----------E--D-EDCEKLLRAE 309 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~--~-~~~~~~l~~~ 309 (360)
+++.++.=...++.|.+.+++++.+.-.. +.+.++.+.+. + . ..+...+.++
T Consensus 327 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vR--------------G~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (443)
T PRK07483 327 LANVRARGEQLRARLRERLGQHPHVGDIR--------------GRGLFVGVELVADRATKAPFDPALKLHARIKREAMAR 392 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeeEe--------------ecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHC
Confidence 55555444444445544444554222111 22222222221 1 1 4567778899
Q ss_pred CeeeeCCCC-C-CCCCCeEEEEe--cCChHHHHHHHHHHHHHHhch
Q 018172 310 RIMARGGRR-F-GADAKYARVSM--LSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 310 gI~~~pg~~-f-~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~~ 351 (360)
||++.+... . +...+.+||.. ..+++++++++++|.+.+.+.
T Consensus 393 Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~ 438 (443)
T PRK07483 393 GLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAA 438 (443)
T ss_pred CcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999987421 1 11245899964 349999999999999999753
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-10 Score=109.47 Aligned_cols=275 Identities=11% Similarity=0.068 Sum_probs=159.6
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHH---H-HHhCCe----------------eeeecC-C
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAE---T-DYLRSG----------------LYKWDG-D 117 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~---~-~~~g~~----------------~~~~~~-~ 117 (360)
+.+.++++++|+...+++.... .|.. +|+.-.-+|...... . ...+-. ...++. |
T Consensus 111 ~~v~f~~SGsEA~e~AiklAr~~tgr~---~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (433)
T PRK00615 111 HKIRFVSSGTEATMTAVRLARGITGRS---IIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYND 187 (433)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhhCCC---EEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCC
Confidence 4799999999999999887642 2332 377777777765411 1 111100 000110 1
Q ss_pred cccccc-----CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCcC--CC--CCCccEEEe
Q 018172 118 ANTFDK-----NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTPI--TG--AADHDIMLF 183 (360)
Q Consensus 118 ~~~~~~-----~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~~--~~--~~~~~i~~~ 183 (360)
.+.++. ..+..+|++.......|.+.+ +.+.++|+++|+++|.||++.+...... .. ....+++
T Consensus 188 ~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~~ga~~~~gv~PDi~-- 265 (433)
T PRK00615 188 FQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGAAAIYHVKPDIT-- 265 (433)
T ss_pred HHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccHhHHHHhcCCCCCeE--
Confidence 111111 134456666555555687765 3778899999999999999963211111 01 1123343
Q ss_pred ccccccCCCCceEEEEeecCHHHHHHHHHH---HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHH
Q 018172 184 TLSKCTGHAGSRIGWALVKDTEVARKMTRF---IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQ 260 (360)
Q Consensus 184 S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (360)
+++|.+| .|+.+|++++ ++++++.+... ....+++.|+....++.+.|+.+.+. ..+++.++.-...++.+.+
T Consensus 266 ~~gK~lg-gG~p~~av~~-~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~--~~~~~~~~~g~~l~~~l~~ 341 (433)
T PRK00615 266 VYGKILG-GGLPAAAVVA-HKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQ--GFYTQLSTLEQNFLSPIEE 341 (433)
T ss_pred EEccccc-CCcceeeeee-cHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHH
Confidence 5899998 7788899998 89999888532 12345667889998888888876543 4455555554444455555
Q ss_pred HHHhcCC-cccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHH
Q 018172 261 VIRQSGV-FGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEI 336 (360)
Q Consensus 261 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~ 336 (360)
.+.+.+. +.... .|.+..+.-. ..+..++.-+...+. ..+...|.++||++.|.. ++ .. =+|.+.++++
T Consensus 342 ~~~~~g~~v~~~r-~G~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~--~~--~ls~~ht~~d 414 (433)
T PRK00615 342 MIRSQGFPVSLVR-YGSMFSFFFN-ENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSP-FE--AS--FLSSAHSMEN 414 (433)
T ss_pred HHHHcCCCeEEEe-eceEEEEEEe-CCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcc-cc--cc--ceecCCCHHH
Confidence 5555321 22121 2222111100 001111111111122 467778888999998743 11 11 2566669999
Q ss_pred HHHHHHHHHHHHhc
Q 018172 337 FNIFLERLSAIQGG 350 (360)
Q Consensus 337 ~~~~~~~l~~~~~~ 350 (360)
++++++++.+++..
T Consensus 415 id~~~~a~~~~~~~ 428 (433)
T PRK00615 415 LDYAQNVLIDSLEK 428 (433)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-10 Score=108.04 Aligned_cols=297 Identities=11% Similarity=0.010 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHh-hcCCCCC----CCCcEEEcCChHHHHHHHHHhhcCC-----C--CCCCceEEEeCCCCCCcHHHHHH
Q 018172 39 PELAEAINNLHH-VVDNAVS----DGRHIVIGTGSTQLYQAALYALSSP-----G--GPEPISVVSAAPYYSQYPAETDY 106 (360)
Q Consensus 39 ~~lr~~la~~~~-~~~~~~~----~~~~i~~t~G~t~~l~~~~~~l~~~-----g--d~~~~~vl~~~p~~~~~~~~~~~ 106 (360)
.++++.+.+|+. ..|.+-. ....-++|+|+|+++...+....+. | ...+..|++++.+|.++..++..
T Consensus 169 t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~i 248 (539)
T PLN02590 169 TELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLI 248 (539)
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHH
Confidence 788888888753 4454421 0124677899999876665554221 1 11123477889999999999999
Q ss_pred hCC---eeeeecCCcc---ccccC-------------CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccC
Q 018172 107 LRS---GLYKWDGDAN---TFDKN-------------NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYW 166 (360)
Q Consensus 107 ~g~---~~~~~~~~~~---~~~~~-------------~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~ 166 (360)
+|+ +++.++.|.+ .++.+ ..+-+|+.+..+-+||.+=+ +++.++|+++++|+.+|.||++
T Consensus 249 lGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG 328 (539)
T PLN02590 249 GGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAG 328 (539)
T ss_pred cCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhh
Confidence 998 4777777632 23321 13456666777778999977 7888999999999999999986
Q ss_pred CCCCc------CCCCCCccEEEeccccccCCCCceEEEEeecCHH-HHHHHHHHHhhc----------------ccc-CC
Q 018172 167 PQYTP------ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTE-VARKMTRFIELG----------------SIG-VS 222 (360)
Q Consensus 167 ~~~~~------~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~-~~~~l~~~~~~~----------------~~~-~~ 222 (360)
..... +.+....+=+..+++|.+. ....+|.++.+++. +.+.+.....+. +.. .-
T Consensus 329 ~al~~~~~r~~~~Gie~ADSit~D~HK~l~-~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsR 407 (539)
T PLN02590 329 NACICPEYRKFIDGIENADSFNMNAHKWLF-ANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSR 407 (539)
T ss_pred hhhcChhhHHHhcCCccCCEEEECchhhcC-cCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCC
Confidence 32211 1233344567889999665 77788988886653 333332111000 011 11
Q ss_pred hHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCC-cccccccccCCCCCCccccc--CC--
Q 018172 223 KESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPL-EYCNFTGKFTNSHPGFAWLE--SK-- 297 (360)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~-- 297 (360)
......++..|+.+ + .+-+.+..++..+..+++.+.|++.+.+++..+.. ..++|- ... ..
T Consensus 408 r~raLklW~~lr~~-G--~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr-----------~~~~~~~~~ 473 (539)
T PLN02590 408 RFRSLKLWMVLRLY-G--SENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFR-----------LAPVDGDED 473 (539)
T ss_pred chHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEE-----------ecCCCCCHH
Confidence 22333344444432 2 26777788888888899999999998888765532 222221 110 01
Q ss_pred --ch--HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC---ChHHHHHHHHHHHHHHhch
Q 018172 298 --ED--EDCEKLLRAERIMARGGRRFGADAKYARVSMLS---REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 298 --~~--~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~ 351 (360)
+. ..+.+.|.+.|.......... +.-++|+++.. ++++++.+++.|.+...+.
T Consensus 474 ~~~~ln~~l~~~l~~~G~~~vs~t~~~-g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~ 533 (539)
T PLN02590 474 QCNERNRELLAAVNSTGKIFISHTALS-GKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKF 533 (539)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeEEC-CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 11 455556666665544333332 24589999865 7899999999999987654
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-10 Score=114.66 Aligned_cols=289 Identities=13% Similarity=0.049 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc----CCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS----SPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~----~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~ 114 (360)
.++.+.+++..|. +. --+..+|++++-...+..+. ..|+..+.+|++|.-.|......++..|++++.+
T Consensus 533 ~elq~~l~eltGm------d~-~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~V 605 (939)
T TIGR00461 533 AQLEKWLCSITGF------DA-ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVPV 605 (939)
T ss_pred HHHHHHHHHHHCC------CC-cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEEe
Confidence 4555556666665 32 33444566666554444432 1233223459999999998888899999999999
Q ss_pred cCCcccc-cc-------C---CCeeEEEEcCCCCCCcccch--HHHHHHhhhcCcEEEEeecccC-CCCCcCCCCCCccE
Q 018172 115 DGDANTF-DK-------N---NGAYIEVVNSPNNPDGTIRE--AVLAKVNRSAEGKLIHDLAYYW-PQYTPITGAADHDI 180 (360)
Q Consensus 115 ~~~~~~~-~~-------~---~~~~~i~~~~p~NPtG~~~~--~~~~~~~~~~~~~li~D~ay~~-~~~~~~~~~~~~~i 180 (360)
+.|.++. +. + +++++|++++||| +|.+-+ +++.++++++|.++++|.++.. ......++..+.++
T Consensus 606 ~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi 684 (939)
T TIGR00461 606 NCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADV 684 (939)
T ss_pred ccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCE
Confidence 8764322 11 2 4889999999999 899877 6777888889999999999864 33344457788999
Q ss_pred EEeccccccCC----CCceEEEEeecCHHHHHHHHH--H----------Hhhc---c-ccCChHHHHHHHHHhcccCCCc
Q 018172 181 MLFTLSKCTGH----AGSRIGWALVKDTEVARKMTR--F----------IELG---S-IGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 181 ~~~S~sK~~~~----~G~r~G~~~~~~~~~~~~l~~--~----------~~~~---~-~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
+++|.+|.|+. .|=.+|++.+ ..++...+-. . +..+ + ...+......+...+..+ +.
T Consensus 685 ~~~s~HKtf~~P~G~GGPg~G~i~v-r~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~l-G~- 761 (939)
T TIGR00461 685 CHLNLHKTFCIPHGGGGPGMGPIGV-KSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMM-GN- 761 (939)
T ss_pred EEecCCccCCCCCCCCCCCeEEEEE-hhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHH-CH-
Confidence 99999996651 2223788888 4555544420 0 0000 0 112223334444445433 32
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--------chHHHHHHHHhhCee
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------EDEDCEKLLRAERIM 312 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gI~ 312 (360)
+-+.++.+.-..+..++.++|.+.. .+..+.....++.. +-++++ ...++.+.|.++|+.
T Consensus 762 -~GL~~~a~~ailnAnYl~~rL~~~~--~~l~~~~~~~~~hE---------fv~~~~~~~~~~g~~~~dIakrL~d~G~h 829 (939)
T TIGR00461 762 -EGLPKASVVAILNANYMATRLKDHY--PILFVGTLKHVAHE---------CILDLRPLKAKTGIEAIDVAKRLQDYGFH 829 (939)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhccC--cccccCCCCceeEE---------EEEeccchhhhcCCCHHHHHHHHHhCCee
Confidence 6677777777888889999998742 33222100000000 122222 128889999999997
Q ss_pred eeCCCCCCCCCCe--EEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 313 ARGGRRFGADAKY--ARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 313 ~~pg~~f~~~~~~--~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
... ..|.. .+. +|.+-+.+.+++|++++++.++-++..
T Consensus 830 apt-~~~pv-~g~lmiepTE~eskeelD~f~~al~~I~~e~~ 869 (939)
T TIGR00461 830 APT-LSFPV-PGTLMVEPTESESLEELDRFCDAMIAIKEEIN 869 (939)
T ss_pred ccc-cCCcc-CCeEEEEeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 433 33432 333 555554589999999999988887643
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-10 Score=103.61 Aligned_cols=279 Identities=13% Similarity=0.073 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEE-cCChHHHHHHHHHhhcCCCCCCCceEE--EeCCCCCCc-HHHHHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVI-GTGSTQLYQAALYALSSPGGPEPISVV--SAAPYYSQY-PAETDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~-t~G~t~~l~~~~~~l~~~gd~~~~~vl--~~~p~~~~~-~~~~~~~g~~~~~~ 114 (360)
.++++.+.++++. + +..+|++ .+|+|.+..++...|+.+|+. ++ +..-.|..- ...++.+| ++..+
T Consensus 52 ~~~~~~Lr~Ll~~---P--~~y~Vlfl~GggT~~~ea~~~Nll~~g~~----~~~~~~tG~fg~r~~~ea~~~g-~v~~~ 121 (364)
T PRK12462 52 AQAEADLRDLLGI---P--DEYGVVFLQGGSSLQFSMIPMNFSRPGAA----APEYVTTGYWSRKAIGEASRVA-AMRVV 121 (364)
T ss_pred HHHHHHHHHHhCC---C--CCCeEEEEeccHHHHHHHHHHHcCCCCCc----EEEEEeCCHHHHHHHHHHHhcC-CceEe
Confidence 5666666666664 1 1235654 466999999999999998985 44 444444432 34555566 44433
Q ss_pred cC----C------ccccccCCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEec
Q 018172 115 DG----D------ANTFDKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFT 184 (360)
Q Consensus 115 ~~----~------~~~~~~~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S 184 (360)
.. + .+.+..+++.+.|.+++-.-.||+..++. .+.++.++|+|.+=.....+-..+.. +++..+
T Consensus 122 ~~~~~~~~~~~p~~~~~~~~~d~~~v~~t~NETstGv~~~~~----~~~~~~llvvD~sS~~~s~pid~~~~--dvi~ag 195 (364)
T PRK12462 122 WDGAASGYRTLPSLAELDWDARAPFRHYVSNETVEGLQFPDA----AGLPDSPLIADMSSDFMSRPFDVEAY--GMVYAH 195 (364)
T ss_pred cCcCCCCCCcCCCHHHhccCCCCcEEEEccCCCCceEecCcc----cccCCCeEEEEcCchhhCCCCChHHc--cEEEee
Confidence 21 1 12233345566666665444799998732 22368999999985543333222333 889999
Q ss_pred cccccCCCCceEEEEeecCHHHHHHHHHH-----------Hh-hccccCChHHHHHHHHHhcccCCCchh--HHHHHHHH
Q 018172 185 LSKCTGHAGSRIGWALVKDTEVARKMTRF-----------IE-LGSIGVSKESQLRAAKILGIVSDDYPN--FFEYGRRL 250 (360)
Q Consensus 185 ~sK~~~~~G~r~G~~~~~~~~~~~~l~~~-----------~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~ 250 (360)
..|.+|+|| ++.++. .+++++...+. .. ....+++....+++..+|+.+.+ + -++.+.++
T Consensus 196 sQKnlgP~G--ltvviv-s~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~---e~GGl~~~~~r 269 (364)
T PRK12462 196 AQKNLGPAG--VTVAII-RRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRD---EIGGVHAMRDI 269 (364)
T ss_pred ccccCCCCc--eEEEEE-CHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHH---hccCHHHHHHH
Confidence 999999888 666776 67666554321 01 12225566777777778876643 3 78899999
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEE
Q 018172 251 MSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYAR 327 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R 327 (360)
-+++.+.+++.+.+.+++...... ...++.-+ +.+++++. ..+.+.++++|+.-.-|+.- -+.+|
T Consensus 270 ~~~ka~~ly~~id~~~~~~~~~~~--------~~~RS~mn-v~f~~~~~~l~~~f~~~a~~~gl~~lkGhr~---vgg~R 337 (364)
T PRK12462 270 NARKAAMLYATLDALNEVIDCHAH--------RAARSTMN-VAFRFRQPRLDTLFKEQSTEAGFCGLSGHRS---IGGIR 337 (364)
T ss_pred HHHHHHHHHHHHHhCCCcccCCCC--------hhhcCcce-EEEEcCCHHHHHHHHHHHHHCCCccccCCcc---cCceE
Confidence 999999999999998744432221 12233333 44455554 66788888999987766532 45699
Q ss_pred EEecC--ChHHHHHHHHHHHHHHhch
Q 018172 328 VSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 328 ~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
.|+-. +.|.++++++-++++.++.
T Consensus 338 as~yna~~~e~v~~L~~fm~~f~~~~ 363 (364)
T PRK12462 338 ASLYNAVSEQAVSRLCAFLKDFAIRH 363 (364)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99855 8899999999888887653
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-10 Score=109.10 Aligned_cols=265 Identities=11% Similarity=0.021 Sum_probs=157.8
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHh-CCe------------eeeecCC-----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYL-RSG------------LYKWDGD----- 117 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~----- 117 (360)
+.+++++++++++..+++.... .|.+.+.+|+.-+.+|......+-.+ |.. +..++..
T Consensus 117 ~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~ 196 (460)
T PRK06916 117 KKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRS 196 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCccccc
Confidence 4799999999999999887642 12111235888888777755433222 211 1112111
Q ss_pred -----cc--------c----ccc-CCCeeEEEEcC-CCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcC
Q 018172 118 -----AN--------T----FDK-NNGAYIEVVNS-PNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPI 172 (360)
Q Consensus 118 -----~~--------~----~~~-~~~~~~i~~~~-p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~ 172 (360)
.+ . +.. ..+.-+|++.- ...-.|.+.+ +.+.++|+++|+++|.||++.+. .....
T Consensus 197 ~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~ 276 (460)
T PRK06916 197 PYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKM 276 (460)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchh
Confidence 00 0 111 13455566554 3555677654 46778999999999999998742 21111
Q ss_pred C--CCC--CccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHH-------HHhhccccCChHHHHHHHHHhcccCCCc
Q 018172 173 T--GAA--DHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTR-------FIELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 173 ~--~~~--~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
. ... .-+ +.+++|.++ .| +.+|.+++ .+++.+.+.. .....+++.|+++..++.+.++.+.+.
T Consensus 277 ~a~~~~gv~PD--iv~~gK~l~-gG~~Pi~av~~-~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~- 351 (460)
T PRK06916 277 FACEHENVTPD--IMTAGKGLT-GGYLPIAITVT-TDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKT- 351 (460)
T ss_pred hHHHhcCCCCC--eeeeehhhh-cCccccceeee-cHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhc-
Confidence 1 111 223 346789998 78 58999998 7888887642 122346778999999998888866543
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--------------hHHHHHHH
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--------------DEDCEKLL 306 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l 306 (360)
... ++++++-+++.+.|+++....... .+.+.+.++.+.+.+ ...+...+
T Consensus 352 -~l~----~~~~~~g~~l~~~l~~l~~~~~v~-----------~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~ 415 (460)
T PRK06916 352 -NLI----EQVARKTEYVATQLEDLFALKHVG-----------DIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRS 415 (460)
T ss_pred -cHH----HHHHHHHHHHHHHHHHhhcCCCeE-----------EeecCCceeeEEeecccccccCCCchhhHHHHHHHHH
Confidence 333 344444445555554431110000 012233333332211 13566778
Q ss_pred HhhCeeeeCCCCCCCCCCeEEEE--ecCChHHHHHHHHHHHHHHhch
Q 018172 307 RAERIMARGGRRFGADAKYARVS--MLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 307 ~~~gI~~~pg~~f~~~~~~~R~s--~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
.++||.+.|. .+.+||. +..++++++++++++.+.+.+.
T Consensus 416 ~~~Gvl~~~~------g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06916 416 RELGMLTRPL------GNTIVFMPPLASTIDELDEMLRILYKAISDV 456 (460)
T ss_pred HHCCeEEEec------CCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 8999999872 2478886 4449999999999999999754
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-10 Score=101.31 Aligned_cols=273 Identities=12% Similarity=0.064 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc---CCCCCCCceEEEeCCCCCCcH-HHHHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS---SPGGPEPISVVSAAPYYSQYP-AETDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~---~~gd~~~~~vl~~~p~~~~~~-~~~~~~g~~~~~~ 114 (360)
.++.+++.+.+-. .-..++++++++||+.++++... +.-| ++--..+|.... ..+.+.|....+.
T Consensus 95 ~~~Ae~L~s~~P~------~l~~vfF~nsGsEANelal~mar~Yt~~~d-----iIa~r~~YHG~t~~t~glt~~~~~k~ 163 (442)
T KOG1404|consen 95 HDLAEALVSKLPG------DLKVVFFVNSGSEANELALKMARLYTGNLD-----IIARRNSYHGNTLYTLGLTGLSPWKQ 163 (442)
T ss_pred HHHHHHHHHhCCC------CceEEEEecCCchHHHHHHHHHHHhcCCce-----EEEeeccccCCchhhcccccCCcccc
Confidence 7788887776532 33469999999999999877652 2223 666666665544 4444444433322
Q ss_pred cCCcc--------------cc-----------------cc-----CCCeeE-EEEcCCCCCCcccch-----HHHHHHhh
Q 018172 115 DGDAN--------------TF-----------------DK-----NNGAYI-EVVNSPNNPDGTIRE-----AVLAKVNR 152 (360)
Q Consensus 115 ~~~~~--------------~~-----------------~~-----~~~~~~-i~~~~p~NPtG~~~~-----~~~~~~~~ 152 (360)
+.+.. ++ +. .+.+.+ .+...-+.--|++-. +...++|+
T Consensus 164 ~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~ 243 (442)
T KOG1404|consen 164 NFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVR 243 (442)
T ss_pred cCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHH
Confidence 21100 00 00 123333 343444444465532 56778899
Q ss_pred hcCcEEEEeecccCC-CCCcCCC--CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHH-hhccccCChHHHHH
Q 018172 153 SAEGKLIHDLAYYWP-QYTPITG--AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI-ELGSIGVSKESQLR 228 (360)
Q Consensus 153 ~~~~~li~D~ay~~~-~~~~~~~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 228 (360)
++|+++|.||++.+. ....+.+ ..+.+-=+-|++|.+| .|+.+|.+++ .+++++.+.+.. .+.+++.|+++..+
T Consensus 244 k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiG-nG~Pl~AVvt-t~EIa~v~~~~~~~fnTyggnP~a~av 321 (442)
T KOG1404|consen 244 KRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIG-NGFPLGAVVT-TPEIADVLNQKSSHFNTYGGNPVACAV 321 (442)
T ss_pred HcCCEEEehhhhhccccccccccccccCCCccHHHHHhhcc-CCCcceeeec-CHHHHHHHHhccccccccCCCchhHHH
Confidence 999999999999853 2333333 3444445789999999 9999999999 899999998766 77889999999999
Q ss_pred HHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC-cccCCCCCcccccccccCCCCCCcccccCCc---------
Q 018172 229 AAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV-FGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--------- 298 (360)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 298 (360)
+.++|+.+.++ +.++.-.+.-.++.+.|.++.. ..+.. -+++.+.++.+.+-+
T Consensus 322 g~aVL~Vikee------~LqE~aa~vG~yl~~~l~~l~d~h~iIG-----------dVRG~GLm~GvE~V~dk~~~~pp~ 384 (442)
T KOG1404|consen 322 GLAVLKVIKEE------NLQENAAEVGSYLLEKLAALKDKHPIIG-----------DVRGRGLMLGVELVSDKSEPKPPA 384 (442)
T ss_pred HHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHhhcCCcee-----------ecccceeEEEEEEecccCCCCCcc
Confidence 99999876542 3333333344444455544411 11111 122333343333211
Q ss_pred ---hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHH
Q 018172 299 ---DEDCEKLLRAERIMARGGRRFGADAKYARVSM--LSREEIFNIFLERL 344 (360)
Q Consensus 299 ---~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l 344 (360)
...+.+..++.|+.+--|..+|. .+||+. +.++||++-+++..
T Consensus 385 ~~~~~~i~~~cke~Gvlvg~g~i~G~---vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 385 TAEGAVIGEQCKELGVLVGKGGIHGN---VFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred hHHHHHHHHHHHHhCeeeecccccce---EEEecCCeeccHHHHHHHHHHH
Confidence 15678889999999966666664 899964 45999996666644
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.8e-10 Score=117.06 Aligned_cols=267 Identities=14% Similarity=0.077 Sum_probs=164.9
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHH-hCC------------eeeeec--------CC
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDY-LRS------------GLYKWD--------GD 117 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~-~g~------------~~~~~~--------~~ 117 (360)
+.+.++++++|++..+++.... .|.. +|+..+.+|......+.. .+. .+..++ ..
T Consensus 681 ~~v~f~nSGsEA~e~AlklAr~~tGr~---~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 757 (1013)
T PRK06148 681 TVAFFVNSGSEANSLALRLARAHTGQR---DAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPER 757 (1013)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCC---eEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCC
Confidence 4789999999999999887743 2322 388777777766533222 110 011111 00
Q ss_pred --c--------cccc-------c-CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCc-C
Q 018172 118 --A--------NTFD-------K-NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTP-I 172 (360)
Q Consensus 118 --~--------~~~~-------~-~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~-~ 172 (360)
. +.++ . ..++.++++.....--|.+.+ +.+.++|+++|+++|.||++.+. .... .
T Consensus 758 ~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~ 837 (1013)
T PRK06148 758 WPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHW 837 (1013)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcc
Confidence 0 0010 1 123455665544444566654 46778999999999999999743 2221 1
Q ss_pred C--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHH-hhccccCChHHHHHHHHHhcccCCCchhHHHHHHH
Q 018172 173 T--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI-ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRR 249 (360)
Q Consensus 173 ~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (360)
. ...+..-=+.+++|.+| .|+.+|.+++ .+++++.+.... ...+++.|+++..++.+.++.+.+. ..+++.++
T Consensus 838 ~a~e~~gv~PDivt~gK~lg-gG~Plgav~~-~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e--~l~~~~~~ 913 (1013)
T PRK06148 838 WAFETQGVVPDIVTMGKPIG-NGHPMGAVVT-TREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDE--DLQRNALE 913 (1013)
T ss_pred hhhhhcCCCcceeeeccccc-CCcceEEEEE-cHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhc--cHHHHHHH
Confidence 1 11222222466789999 8999999999 799988875421 2467889999999999999877654 45555555
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--------ch---HHHHHHHHhhCeeeeCCCC
Q 018172 250 LMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------ED---EDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 250 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~l~~~gI~~~pg~~ 318 (360)
.=...++.|.+...+++.+.- +.+.|.++.+.+. +. ..+.+.+.++||.+.+.
T Consensus 914 ~G~~l~~~L~~l~~~~~~i~~--------------VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~-- 977 (1013)
T PRK06148 914 IGNYLLAGLRELQDRFDIIGD--------------VRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTE-- 977 (1013)
T ss_pred HHHHHHHHHHHHHHhCCCceE--------------EeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEecc--
Confidence 444444444444444542211 1233334333332 11 45677788899999863
Q ss_pred CCCCCCeEEEEec--CChHHHHHHHHHHHHHHhc
Q 018172 319 FGADAKYARVSML--SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 319 f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~ 350 (360)
+...+.+||... .++++++++++++.+++.+
T Consensus 978 -g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~ 1010 (1013)
T PRK06148 978 -GPHDNVLKIRPPLIFSRADADHLLEVLDDVLAA 1010 (1013)
T ss_pred -CCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 222468888653 4999999999999999864
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-10 Score=108.10 Aligned_cols=266 Identities=11% Similarity=-0.014 Sum_probs=159.3
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHh-CCe------------eeeecCCc----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYL-RSG------------LYKWDGDA---- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~~---- 118 (360)
+.+++++++++++..+++.... .|.+.+.+|+.-+.+|......+-.. |.. +..++...
T Consensus 130 ~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~ 209 (472)
T PRK08742 130 SKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLA 209 (472)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCcccc
Confidence 4799999999999999887632 12222235888888787765443332 211 11111110
Q ss_pred --------------c----cccc-CCCeeEEEEcC-CCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCC-CCcC
Q 018172 119 --------------N----TFDK-NNGAYIEVVNS-PNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQ-YTPI 172 (360)
Q Consensus 119 --------------~----~~~~-~~~~~~i~~~~-p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~-~~~~ 172 (360)
+ .+.. ..+.-+|++.- ..+-.|.+.+ +.+.++|+++|+++|.||++.+.. ....
T Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~ 289 (472)
T PRK08742 210 EPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTL 289 (472)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccc
Confidence 0 0111 13445555544 2556677654 467889999999999999988532 2111
Q ss_pred C--CCCCccEEEeccccccCCCCc-eEEEEeecCHHHHHHHHH------HHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 173 T--GAADHDIMLFTLSKCTGHAGS-RIGWALVKDTEVARKMTR------FIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 173 ~--~~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
. ...+..-=+-+++|.++ .|. .+|.+++ .+++.+.+.. +....+++.|+++..++.+.++.+.+. ..
T Consensus 290 ~a~e~~gv~PDiv~~gKgl~-gG~~Plaav~~-~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~--~l 365 (472)
T PRK08742 290 FACEQAGVMPDLLCLSKGLT-GGFLPLSAVLA-TQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADD--DV 365 (472)
T ss_pred hHHHhcCCCCCEEEEccccc-CCCCCcceeec-cHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHC--CH
Confidence 1 11221222445589998 784 8999998 8888887742 123356788999999999988876553 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----------h----HHHHHHHHhh
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----------D----EDCEKLLRAE 309 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~----~~~~~~l~~~ 309 (360)
+++.++.=...+ .+.+.+.+++.+.-. ++.+.++.+.+.. . ..+.+.+.++
T Consensus 366 ~~~~~~~g~~l~-~~~~~~~~~~~i~dv--------------RG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (472)
T PRK08742 366 IARNQPTAARMT-QLAAQIGEHPHVADV--------------RQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALAR 430 (472)
T ss_pred HHHHHHHHHHHH-HHHHHHhcCCCeeeE--------------eccceEEEEEeccCccccccCCchhHHHHHHHHHHHHC
Confidence 444443322222 333344445422211 2333333333311 0 3456677789
Q ss_pred CeeeeCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhc
Q 018172 310 RIMARGGRRFGADAKYARVSML--SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 310 gI~~~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~ 350 (360)
||.+.+. .+.+||... .+++++++++++|.+.+.+
T Consensus 431 Gll~~~~------g~vi~~~PpL~it~~ei~~~~~~l~~~l~~ 467 (472)
T PRK08742 431 GVVLRPL------GDVLYWMPPYCVDEAQLALLADTTRHAIDE 467 (472)
T ss_pred CeEEEec------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999862 257999753 3999999999999999875
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-09 Score=103.19 Aligned_cols=279 Identities=14% Similarity=0.055 Sum_probs=178.8
Q ss_pred cHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCC--CCCCCceEEEeCCCCCCcHHHHHHhCCeeeee
Q 018172 38 VPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSP--GGPEPISVVSAAPYYSQYPAETDYLRSGLYKW 114 (360)
Q Consensus 38 ~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~--gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~ 114 (360)
..++++.+-+|+. ..|.+.... .-++|+|+|+++...+....+. ... +++++-+|.++..++..+|++++.+
T Consensus 131 s~~~E~~Vi~wla~L~g~p~~~~-~G~vtsGGTEaNL~Al~aARe~~~~~v----vy~S~~aH~Sv~KAa~llgi~~~~V 205 (470)
T PLN02263 131 SRQFEVGVLDWFARLWEIEKNEY-WGYITNCGTEGNLHGILVGREVFPDGI----LYASRESHYSVFKAARMYRMECVKV 205 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCC-eEEEeCcHHHHHHHHHHHHHhhcCCcE----EEEcCCccHHHHHHHHhcCCcceEe
Confidence 3788888887753 444432221 3578999999988877776542 223 8999999999999999999999999
Q ss_pred cCCcc-cccc---------CC-CeeEEEEcCCCCCCcccch-HHHHHHhhhcCc-----EEEEeecccCCCCCc------
Q 018172 115 DGDAN-TFDK---------NN-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEG-----KLIHDLAYYWPQYTP------ 171 (360)
Q Consensus 115 ~~~~~-~~~~---------~~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~-----~li~D~ay~~~~~~~------ 171 (360)
+.+.+ .++. +. ++-+|+.+..+-++|.+=+ +++.++|+++|+ |+.+|.||++...+.
T Consensus 206 p~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~ 285 (470)
T PLN02263 206 DTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPK 285 (470)
T ss_pred ccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccc
Confidence 87643 2222 21 3456677778889999977 778888888886 999999998532211
Q ss_pred CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh-----ccccCCh--HHHHHHHHHhcccCCCchhHH
Q 018172 172 ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL-----GSIGVSK--ESQLRAAKILGIVSDDYPNFF 244 (360)
Q Consensus 172 ~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~-----~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 244 (360)
+......+=+..+.+|.++ .....|.++.+ ....+.+.....+ .+...+. .....++..+... + .+.+
T Consensus 286 ~df~~~vDSIsvD~HK~l~-~P~~cgvll~R-~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~-G--~~G~ 360 (470)
T PLN02263 286 VTFKKPIGSVSVSGHKFVG-CPMPCGVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK-G--YRGF 360 (470)
T ss_pred cCCCcCccEEEECCccccC-CCcCEEEEEEe-hhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHh-C--HHHH
Confidence 1111223345678899666 77889999885 4444443211110 1112222 2234445555532 2 2667
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCC
Q 018172 245 EYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAK 324 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~ 324 (360)
.+..++..++.+++.+.|++.+...+..|... .+.+..+..+. ..+|-.+.+ .++
T Consensus 361 ~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s~--------------~V~f~~p~~~~-----~~~gW~L~~------~~~ 415 (470)
T PLN02263 361 QKEVQKCLRNAHYLKDRLREAGISAMLNELSS--------------TVVFERPKDEE-----FVRRWQLAC------QGN 415 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEeCCCce--------------EEEEecCchHH-----hhcceEEcc------CCC
Confidence 77777778888999999999865555544422 23333333211 123443332 245
Q ss_pred eEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 325 YARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 325 ~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
.+++++.. +.+.++++++.|++.....
T Consensus 416 ~~Hivvmphv~~~~id~fi~DL~~~~~~~ 444 (470)
T PLN02263 416 IAHVVVMPSVTIEKLDYFLKELVEKRSTW 444 (470)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHHhhh
Confidence 78998866 7899999999999888753
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-09 Score=103.03 Aligned_cols=279 Identities=11% Similarity=0.047 Sum_probs=158.4
Q ss_pred EEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHhCCe-------------eeeecCCc---------
Q 018172 62 IVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYLRSG-------------LYKWDGDA--------- 118 (360)
Q Consensus 62 i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~--------- 118 (360)
++++++++++...+++.... .|.. +|+.-..+|......+-..... +..++.+.
T Consensus 124 ~f~~~SGsEAve~AlklAr~~tgr~---~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (459)
T PRK06931 124 QFTGPSGADAVEAAIKLAKTYTGRS---NVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIG 200 (459)
T ss_pred EEeCCCcHHHHHHHHHHHHHhcCCC---eEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCC
Confidence 45668889999998887632 2322 3888888888776554432111 11121110
Q ss_pred -----ccc----cc--------CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCC-CCcCC--
Q 018172 119 -----NTF----DK--------NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQ-YTPIT-- 173 (360)
Q Consensus 119 -----~~~----~~--------~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~-~~~~~-- 173 (360)
+.+ +. .++.-+|++.-...-.|.+.+ +.+.++|+++|+++|.||++.+.. .....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~ 280 (459)
T PRK06931 201 GEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAF 280 (459)
T ss_pred chhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHh
Confidence 000 00 123455666444444576654 467889999999999999988432 11111
Q ss_pred CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHH
Q 018172 174 GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 174 ~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
...+-.-=+.+++|.++ .|+.+|.+++ .++ ++.+.......+++.|+++..++.+.|+.+.+. ...++.++.=..
T Consensus 281 ~~~gv~PDivt~gK~l~-gG~Pi~av~~-~~~-~~~~~~~~~~~T~~gnpla~aaala~L~~l~~~--~l~~~~~~~G~~ 355 (459)
T PRK06931 281 EHAGIEPDIIVMSKAVG-GGLPLAVLGI-KKE-FDAWQPGGHTGTFRGNQLAMATGLTTLKILKEE--NLAQNAAERGEW 355 (459)
T ss_pred hhcCCCCCEEEeccccc-CCcceeeeee-HHH-HhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhC--CHHHHHHHHHHH
Confidence 11221112456689998 7899998877 454 355543334567789999999999998876553 444555444444
Q ss_pred HHHHHHHHHHhcCCcccCCCCCcccccccccCCCCC-Ccc-cccCCch--HHHHHHHHhhCeeeeCCCCCCCCCCeEEEE
Q 018172 254 RWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHP-GFA-WLESKED--EDCEKLLRAERIMARGGRRFGADAKYARVS 329 (360)
Q Consensus 254 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~--~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s 329 (360)
.++.|.+...+++.+.-..-.|.+..+.- ...... .+. ....... ..+...+.++||.+.++... .+.+|+.
T Consensus 356 l~~~L~~l~~~~~~i~~vrG~Glm~giel-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~---~~~l~~~ 431 (459)
T PRK06931 356 LKAQLAELQKRYPCIGNVRGRGLMIGIEI-VDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRN---GNVVRLL 431 (459)
T ss_pred HHHHHHHHHHhCCCeEeEecCceEEEEEE-ccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCC---CCEEEEE
Confidence 44445444445543222222222211100 000000 000 0000011 45666778899999874322 3578886
Q ss_pred ec--CChHHHHHHHHHHHHHHhchh
Q 018172 330 ML--SREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 330 ~~--~~~e~~~~~~~~l~~~~~~~~ 352 (360)
.. .++++++++++++.+.+.+.-
T Consensus 432 Ppl~it~~eid~~~~~l~~~l~~~~ 456 (459)
T PRK06931 432 PPLLITQAECEEFIDRFEQALLAAV 456 (459)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 53 499999999999999997643
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-09 Score=101.83 Aligned_cols=263 Identities=13% Similarity=0.082 Sum_probs=153.3
Q ss_pred CcEEEcCChHHHHHHHHHhhcC--------CCC--CCCceEEEeCCCCCCcHHHHHHh-CCeee-----------eecCC
Q 018172 60 RHIVIGTGSTQLYQAALYALSS--------PGG--PEPISVVSAAPYYSQYPAETDYL-RSGLY-----------KWDGD 117 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~--------~gd--~~~~~vl~~~p~~~~~~~~~~~~-g~~~~-----------~~~~~ 117 (360)
+.|.++++++|++..+++.... .|. +.+.+|+.-..+|......+-.. |.... .++..
T Consensus 111 ~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~ 190 (443)
T PRK08297 111 PHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNP 190 (443)
T ss_pred CEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCC
Confidence 5899999999999999887731 231 01134888887777765443332 21100 01000
Q ss_pred -------ccc------------------ccc-CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccC
Q 018172 118 -------ANT------------------FDK-NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYW 166 (360)
Q Consensus 118 -------~~~------------------~~~-~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~ 166 (360)
.+. +.. ..++.+|++.-....-|.+.+ +.+.++|+++|+++|.||++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG 270 (443)
T PRK08297 191 KLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTG 270 (443)
T ss_pred CCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhc
Confidence 000 000 134556666544444566543 4678899999999999999974
Q ss_pred CCCCc-CC--C--CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHH-----HHhhccccCChHHHHHHHHHhccc
Q 018172 167 PQYTP-IT--G--AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTR-----FIELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 167 ~~~~~-~~--~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
..... .. . .-.-+++ +++|.++ . |.+++ ..++.+.... .....+++.|+++..++.+.++.+
T Consensus 271 fGRtG~~~a~~~~gv~PDiv--~~gK~l~-~----~a~l~-~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l 342 (443)
T PRK08297 271 VGLTGTAWAYQQLGVRPDIV--AFGKKTQ-V----CGIMA-GRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVI 342 (443)
T ss_pred cCccchHHHHHhcCCCCCEE--Eeccccc-c----cceec-chHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHH
Confidence 31111 10 1 1123344 5789875 2 33444 3343322211 123467788999999999988866
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeee
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMA 313 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~ 313 (360)
.+. ..+++.++.-+..++.+.+...+++.+.. . +++.+.++.+.+++. ..+...|.++||.+
T Consensus 343 ~~~--~l~~~~~~~g~~l~~~L~~l~~~~~~~~~-~------------vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~ 407 (443)
T PRK08297 343 EED--GLVENAARQGEYLLARLEELAAEFPAVVS-N------------VRGRGLMCAFDLPTTADRDEVIRRLWEEGVLV 407 (443)
T ss_pred Hhc--CHHHHHHHHHHHHHHHHHHHHHHCCCcce-e------------eeccceEEEEEecCHHHHHHHHHHHHHCCEEE
Confidence 543 55555555555555555554444542210 1 113334555666543 45667777899999
Q ss_pred eCCCCCCCCCCeEEEE--ecCChHHHHHHHHHHHHHHhc
Q 018172 314 RGGRRFGADAKYARVS--MLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 314 ~pg~~f~~~~~~~R~s--~~~~~e~~~~~~~~l~~~~~~ 350 (360)
.|+. ...+||+ +..++++++++++++.+++.+
T Consensus 408 ~~~~-----~~~lr~~P~l~~t~~eid~~l~~l~~~l~~ 441 (443)
T PRK08297 408 LPCG-----ERSIRFRPALTVTTEEIDAAIDALRRALPE 441 (443)
T ss_pred ecCC-----CCeEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 8742 3468884 555999999999999998864
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-09 Score=103.42 Aligned_cols=265 Identities=14% Similarity=0.068 Sum_probs=155.8
Q ss_pred cEEEc-CChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CC------------eeeeecCCcc------
Q 018172 61 HIVIG-TGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RS------------GLYKWDGDAN------ 119 (360)
Q Consensus 61 ~i~~t-~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~------ 119 (360)
.++++ ++++++...+++.... +|.. +|+.-..+|......+... |. .+..++.+.+
T Consensus 128 ~v~f~~~SGSEAve~AlklAr~~tgr~---~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 204 (464)
T PRK06938 128 KIQFCGPTGTDAVEAALKLVKTATGRS---TVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFG 204 (464)
T ss_pred eEEEeCCCcHHHHHHHHHHHHHhhCCC---eEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCcccccccc
Confidence 46554 6889999999887642 2322 4887777777765443332 21 1112221110
Q ss_pred ------------cccc---C-----CCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCC-CCcCC
Q 018172 120 ------------TFDK---N-----NGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQ-YTPIT 173 (360)
Q Consensus 120 ------------~~~~---~-----~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~-~~~~~ 173 (360)
.++. + .+.-+|++.-...--|.+.+ +.+.++|+++|+++|.||++.+.. .....
T Consensus 205 ~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~ 284 (464)
T PRK06938 205 LGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMF 284 (464)
T ss_pred CchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHH
Confidence 0000 0 13455555443444576654 467889999999999999988532 21111
Q ss_pred --CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 174 --GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 174 --~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
...+..-=+.+++|.++ .|+.+|.+++ .+++ +.+.......+++.|+++..++.+.|+.+.+. +..++.++.=
T Consensus 285 a~e~~gv~PDiv~~gKglg-gG~PlsAv~~-~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~--~l~~~~~~~G 359 (464)
T PRK06938 285 AFEHAGIIPDVVVLSKAIG-GSLPLAVVVY-REWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEH--RLAEHAAAMG 359 (464)
T ss_pred HHHhcCCCCCEEEeecccc-CCCceEEEee-hhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHh--HHHHHHHHHH
Confidence 11221122445589998 7899999998 5554 54433334467789999999999998876543 4444444444
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--------------c-h--HHHHHHHHhhCeeee
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------------E-D--EDCEKLLRAERIMAR 314 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-~--~~~~~~l~~~gI~~~ 314 (360)
...++.+.+...+++.+.-+. +.+.++.+.+. + . ..+...+.++||.+.
T Consensus 360 ~~l~~~L~~l~~~~~~i~~Vr--------------G~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~ 425 (464)
T PRK06938 360 ERLREHLRQLQRDYPQLGDVR--------------GRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILE 425 (464)
T ss_pred HHHHHHHHHHHHhCCCeeeee--------------ccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEe
Confidence 444444444334454322222 22222222221 1 1 445667778999998
Q ss_pred CCCCCCCCCCeEEEE--ecCChHHHHHHHHHHHHHHhc
Q 018172 315 GGRRFGADAKYARVS--MLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 315 pg~~f~~~~~~~R~s--~~~~~e~~~~~~~~l~~~~~~ 350 (360)
++..+ .+.+||. +..++++++++++++.+++.+
T Consensus 426 ~~g~~---~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 460 (464)
T PRK06938 426 LGGRH---GSVVRFLPPLIITAEQIDEVAEIFAEAVAA 460 (464)
T ss_pred ecCCC---CCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 74322 3578985 444999999999999999865
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.4e-10 Score=103.50 Aligned_cols=298 Identities=11% Similarity=0.042 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc----CCCCCCCceEEEeCCCCCCcHHHHHHhCC-ee--
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS----SPGGPEPISVVSAAPYYSQYPAETDYLRS-GL-- 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~----~~gd~~~~~vl~~~p~~~~~~~~~~~~g~-~~-- 111 (360)
.+|-+.|++.... ..-++|++|+|+++++..+++..+ ..|..++.++|.-...|..-.-.+-..|. ..
T Consensus 90 ~~LA~~L~~~aP~-----~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~ 164 (449)
T COG0161 90 IELAEKLAELAPE-----GGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALR 164 (449)
T ss_pred HHHHHHHHHhCCC-----CCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhh
Confidence 5555555555431 024689999999999999998763 33544445688877887765444333322 11
Q ss_pred -----------eeecCC-----------ccc-------ccc-----CCCeeEEEEcCC-CCC-Ccccch-----HHHHHH
Q 018172 112 -----------YKWDGD-----------ANT-------FDK-----NNGAYIEVVNSP-NNP-DGTIRE-----AVLAKV 150 (360)
Q Consensus 112 -----------~~~~~~-----------~~~-------~~~-----~~~~~~i~~~~p-~NP-tG~~~~-----~~~~~~ 150 (360)
..++.. .+. ++. .+.+-+-++.-| ..= .|..++ +.++++
T Consensus 165 ~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~i 244 (449)
T COG0161 165 HAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREI 244 (449)
T ss_pred hhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHH
Confidence 111111 010 000 223444444444 333 777765 578899
Q ss_pred hhhcCcEEEEeecccCC-CCCcCCC--CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHH-----HhhccccCC
Q 018172 151 NRSAEGKLIHDLAYYWP-QYTPITG--AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRF-----IELGSIGVS 222 (360)
Q Consensus 151 ~~~~~~~li~D~ay~~~-~~~~~~~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~-----~~~~~~~~~ 222 (360)
|++||+++|.||+-.+. ....+.. ..+..-=+-+++|.++-.=+.+|.+++ .+++.+.+..- ....+++.|
T Consensus 245 C~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~-~~~I~~~~~~~~~~~f~HG~TYsgh 323 (449)
T COG0161 245 CDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLT-SDRIYEAFSDGDAGAFMHGHTYSGN 323 (449)
T ss_pred HHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeecccccccchhhHhHhh-hHHHHHHHhcccCCeeccCCccccC
Confidence 99999999999998743 3333322 222222255677877633445666666 68888887653 344678899
Q ss_pred hHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHH
Q 018172 223 KESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDC 302 (360)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (360)
+++..++.+.|+.+.+. ..+++.++.-....+.|.+.+..++.+.=....|.+..+. .+.....-.-+...-...+
T Consensus 324 PlacAaAla~L~i~e~e--~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iE--lv~d~~t~~~f~~~~~~~~ 399 (449)
T COG0161 324 PLACAAALANLDILEEE--DLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIE--LVADKATKTPFEARVGARV 399 (449)
T ss_pred HHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEE--EecccccccchhhhHHHHH
Confidence 99999999999877654 6666666554444444444444332222111112111100 0000000000000002678
Q ss_pred HHHHHhhCeeeeCCCCCCCCCCeEEEE--ecCChHHHHHHHHHHHHHHhchh
Q 018172 303 EKLLRAERIMARGGRRFGADAKYARVS--MLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 303 ~~~l~~~gI~~~pg~~f~~~~~~~R~s--~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
.+.+.++|+++||. | +.+=++ +..++|+++++++++.+.+++..
T Consensus 400 ~~~~~e~Gl~iRp~---g---~~i~~~PPliit~~eid~l~~~l~~al~~~~ 445 (449)
T COG0161 400 RAAALERGLLIRPL---G---DVIYLMPPLIITREEIDELVDALREALDETL 445 (449)
T ss_pred HHHHHHCCeEEeec---C---CEEEEcCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999994 3 133343 23499999999999999998754
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-09 Score=94.61 Aligned_cols=282 Identities=12% Similarity=0.037 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCC--CCCCCceEEEeCCC-CCCcH----HHHHHhCC--
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSP--GGPEPISVVSAAPY-YSQYP----AETDYLRS-- 109 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~--gd~~~~~vl~~~p~-~~~~~----~~~~~~g~-- 109 (360)
..|-..++-++|. .+++++++.+++--++.++.+.+++ |+. ||+++-. |+.-. ..++.++.
T Consensus 79 ~~lgdklApLiGA------~~~Evvv~dtts~nl~k~L~aalr~~~~r~----vIv~E~~~fpTdly~a~g~~~~~~~~~ 148 (407)
T COG3844 79 ERLGDKLAPLIGA------RAGEVVVTDTTSINLFKVLAAALRPQEGRR----VIVSEGDNFPTDLYIAEGLADLLGIGY 148 (407)
T ss_pred hHHHHHhhhhhcC------CCCceEEeCCcchHHHHHHHHHhccCCCce----EEeecCCCCCcchhhhcchhhhhcccc
Confidence 4566777778886 6779999999999999988887654 444 7777643 33222 33444432
Q ss_pred eeeeecCCcccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccc
Q 018172 110 GLYKWDGDANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLS 186 (360)
Q Consensus 110 ~~~~~~~~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~s 186 (360)
++.-. ..+..+.. ++++.+|++++.|.-||..++ ..+-.++.++|++++.|-+|+.+..+-.....+.++-+++..
T Consensus 149 ~~~~~-~~P~~~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsy 227 (407)
T COG3844 149 DLEGV-IAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSY 227 (407)
T ss_pred cceee-eChHHHHHhhccceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeec
Confidence 22222 22322222 456788899999989999998 666677777999999999999877776667888899999999
Q ss_pred cccC-CCCceEEEEeecCHHHHHHHHHHH-----------------------hhccccCChHHHHHHHHHhcccCCCchh
Q 018172 187 KCTG-HAGSRIGWALVKDTEVARKMTRFI-----------------------ELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 187 K~~~-~~G~r~G~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
|.+. -||-..|..+. ++..+...... .+...+.+..+..+...+|+...+ -
T Consensus 228 KYLNgGPGapa~l~v~--~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~---~ 302 (407)
T COG3844 228 KYLNGGPGAPAGLFVA--PRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFAD---V 302 (407)
T ss_pred eeccCCCCCceeEEec--cccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhh---c
Confidence 9874 26755454433 22222211110 111112333444444445554433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-C--CcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCC
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQS-G--VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRF 319 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f 319 (360)
-+.+.|++--...+++.+.+... + ++.+..|... ...+..+.+..+....+.+.|-++||.. .|
T Consensus 303 ~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~---------~~rGsqvS~~hp~~~~V~qaLi~rGVig----D~ 369 (407)
T COG3844 303 DITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAH---------EERGSQVSLYHPHGYQVMQALIDRGVIG----DF 369 (407)
T ss_pred CHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchh---------hhccceeeEecCcHHHHHHHHHHcCccc----cc
Confidence 48888888888888888888765 2 4555555432 2555677788887789999999999973 13
Q ss_pred CCCCCeEEEEecC---ChHHHHHHHHHHHHHHhc
Q 018172 320 GADAKYARVSMLS---REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 320 ~~~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~ 350 (360)
. .++.+||.++. +-+|+=.+++.|.++++.
T Consensus 370 R-~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t 402 (407)
T COG3844 370 R-EPDVLRFGFTPLYVSFVDVWDAVDALEEVLDT 402 (407)
T ss_pred c-CCCeeeecCccceechhHHHHHHHHHHHHHHh
Confidence 2 37899999977 789999999999999875
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-09 Score=100.16 Aligned_cols=196 Identities=15% Similarity=0.135 Sum_probs=117.3
Q ss_pred CeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCc-C-C-CCCC----ccEEEeccccccCCCC
Q 018172 126 GAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTP-I-T-GAAD----HDIMLFTLSKCTGHAG 193 (360)
Q Consensus 126 ~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~-~-~-~~~~----~~i~~~S~sK~~~~~G 193 (360)
+..+|++.-.....|.+.+ +.+.++|+++|+++|.||++.+..... . . ...+ -+ +.+++|.++ .|
T Consensus 251 ~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PD--i~t~gK~lg-~g 327 (464)
T TIGR00699 251 PVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPD--MVTFSKKFQ-TA 327 (464)
T ss_pred cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCC--EEEehhhhc-cC
Confidence 4566666655556687764 467789999999999999987432211 1 0 1111 33 366789986 33
Q ss_pred ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC-cccCC
Q 018172 194 SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV-FGLPE 272 (360)
Q Consensus 194 ~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~ 272 (360)
|+++. .+ ............+++.|+.+..++.+.|+.+.+. ...++.++.=...++.+.+...+++. +.-..
T Consensus 328 ---G~~~~-~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~--~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vR 400 (464)
T TIGR00699 328 ---GYFFH-DP-AFRPNKPYRQFNTWMGDPSRALILREIIQEIKRK--DLLENVAHVGDYLYTGLEDLQKKYPEFIQNLR 400 (464)
T ss_pred ---Ccccc-ch-hccCCCCcccccCCCCCHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHhCCCceeeec
Confidence 44444 32 2211112223457788999999998888866543 44444444333444444333334431 11111
Q ss_pred CCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHH
Q 018172 273 YPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSML--SREEIFNIFLERLSAI 347 (360)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~ 347 (360)
. .+.+.++-+.+++. ..+.+.+.++||.+.+. + .+.+||... .++++++.++++|.++
T Consensus 401 g------------~G~Glm~gie~~~~~~~~~i~~~~~~~Gvl~~~~---g--~~~ir~~Ppl~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 401 G------------KGRGTFIAWDTPDEAKRDKLLKKARNNGVNIGGC---G--VKAIRLRPMLVFQKHHADIFLEIISKI 463 (464)
T ss_pred c------------cCeEEEEEEecCCHHHHHHHHHHHHHCCcEEecC---C--CCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 0 03334555666553 56777788899999763 2 468999764 3999999999999886
Q ss_pred H
Q 018172 348 Q 348 (360)
Q Consensus 348 ~ 348 (360)
+
T Consensus 464 ~ 464 (464)
T TIGR00699 464 I 464 (464)
T ss_pred C
Confidence 4
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-08 Score=96.29 Aligned_cols=260 Identities=14% Similarity=0.087 Sum_probs=150.7
Q ss_pred CcEEEcCChHHHHHHHHHhhcC--------CCCC--CCceEEEeCCCCCCcHHHHHH-hCCe-ee----e------e--c
Q 018172 60 RHIVIGTGSTQLYQAALYALSS--------PGGP--EPISVVSAAPYYSQYPAETDY-LRSG-LY----K------W--D 115 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~--------~gd~--~~~~vl~~~p~~~~~~~~~~~-~g~~-~~----~------~--~ 115 (360)
+.+.+++++++++..+++.... .|.. ++.+|+.-.-+|......+-. .|.. .. + + +
T Consensus 104 ~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p 183 (431)
T TIGR03251 104 PHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNP 183 (431)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCC
Confidence 5799999999999999887631 1210 012488877777766544332 2211 00 0 0 0
Q ss_pred -----CCcc-----------cc-------cc-CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccC
Q 018172 116 -----GDAN-----------TF-------DK-NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYW 166 (360)
Q Consensus 116 -----~~~~-----------~~-------~~-~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~ 166 (360)
.+.+ .+ .. ..++-++++.-...-.|.+.+ +.+.++|+++|+++|+||++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG 263 (431)
T TIGR03251 184 KLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTG 263 (431)
T ss_pred cccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhc
Confidence 0000 00 00 245667777655666787754 4677899999999999999984
Q ss_pred CCCCc-C--CC--CCCccEEEeccccccCCCCceEEEEeecCH--HHHHHH-H-HHHhhccccCChHHHHHHHHHhcccC
Q 018172 167 PQYTP-I--TG--AADHDIMLFTLSKCTGHAGSRIGWALVKDT--EVARKM-T-RFIELGSIGVSKESQLRAAKILGIVS 237 (360)
Q Consensus 167 ~~~~~-~--~~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~--~~~~~l-~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (360)
..... . .. ....+++ +++|.+. . .|++.. .. ++.+.. . ......+++.|+++..++.+.++.+.
T Consensus 264 ~GrtG~~~a~~~~gv~PDi~--~~gK~~~-~---~g~~~~-~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~ 336 (431)
T TIGR03251 264 VGLTGTAWAYQQLGVQPDIV--AFGKKTQ-V---CGIMAG-RRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIE 336 (431)
T ss_pred cCccchHHHHHhcCCCCCEE--EecccCc-c---ceEEec-chHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 32221 1 01 1123444 4688752 2 255544 32 222211 1 11123567788999999988888765
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeee
Q 018172 238 DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMAR 314 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~ 314 (360)
+. ...++.++.-+..++.|.+...+++.+.. . +++.+.++.+.+++. ..+.+.|.++||.+.
T Consensus 337 ~~--~l~~~~~~~g~~l~~~L~~l~~~~~~~i~-~------------vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~ 401 (431)
T TIGR03251 337 EE--RLVDNARVQGAHLLARLHELAAEFPHLVS-N------------PRGRGLMCAFDLPSTADRDEVIRQLYREGVLLL 401 (431)
T ss_pred hc--CHHHHHHHHHHHHHHHHHHHHHhCcccee-c------------ccccceeEEEEeCCHHHHHHHHHHHHhCCeEEe
Confidence 43 44556665555555555554444531111 1 112333455555543 567777889999998
Q ss_pred CCCCCCCCCCeEEEEec--CChHHHHHHHHHHHH
Q 018172 315 GGRRFGADAKYARVSML--SREEIFNIFLERLSA 346 (360)
Q Consensus 315 pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~ 346 (360)
|.. .+.+||+.. .++++++++++++.+
T Consensus 402 ~~g-----~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 402 GCG-----ERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred cCC-----CCeEEEECCccCCHHHHHHHHHHHHh
Confidence 732 356888654 499999999999876
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.3e-09 Score=99.63 Aligned_cols=228 Identities=18% Similarity=0.109 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcC---------CCCC-CCceEEEeCCCCCCcHHHHHHh
Q 018172 39 PELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSS---------PGGP-EPISVVSAAPYYSQYPAETDYL 107 (360)
Q Consensus 39 ~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~---------~gd~-~~~~vl~~~p~~~~~~~~~~~~ 107 (360)
.++++.+..++. ..+.+ ....-.+|+|+|+++.+.+.+..+ .+.. ..++|+++.-.|.+....+..+
T Consensus 100 ~~~E~~~v~~l~~l~~~~--~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~l 177 (460)
T COG0076 100 AELEERVVNMLSDLLGAP--EEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL 177 (460)
T ss_pred HHHHHHHHHHHHHHhCCC--CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHHh
Confidence 667777666643 22332 233578999999999877665521 1100 0125999999999999999999
Q ss_pred CCeeeeecCCcccccc---------CCCeeE--EEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcC---
Q 018172 108 RSGLYKWDGDANTFDK---------NNGAYI--EVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPI--- 172 (360)
Q Consensus 108 g~~~~~~~~~~~~~~~---------~~~~~~--i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~--- 172 (360)
|.+...++++...... ++++-. |+-+..+-+||.+=+ +++.++|+++++++++|.||++...+..
T Consensus 178 G~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~ 257 (460)
T COG0076 178 GLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPD 257 (460)
T ss_pred CCCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCcc
Confidence 9999888877532222 234444 888888889999877 8889999999999999999986322111
Q ss_pred ----CCCCCccEEEeccccccCCCCceEEEEeecCH-HHHHHHHHHHhhccc--------cCChHH--HHHHHHHhcccC
Q 018172 173 ----TGAADHDIMLFTLSKCTGHAGSRIGWALVKDT-EVARKMTRFIELGSI--------GVSKES--QLRAAKILGIVS 237 (360)
Q Consensus 173 ----~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~-~~~~~l~~~~~~~~~--------~~~~~~--~~~~~~~l~~~~ 237 (360)
......+=+..|++| |+.+...+||++.+++ ++.+.+.....+... ..+.++ ..++.+.+..+
T Consensus 258 ~~~~f~l~~vdSIt~d~HK-~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~l- 335 (460)
T COG0076 258 GRWDFGLEGVDSITVDGHK-YGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRL- 335 (460)
T ss_pred chhhcCCCCceEEEECccc-ccCCCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHh-
Confidence 122334456779999 5557778999999888 455554422222211 111122 22222234332
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCC
Q 018172 238 DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPE 272 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 272 (360)
+ .+.+.++.++..+..+++.+.|++.+.+.+..
T Consensus 336 G--~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~ 368 (460)
T COG0076 336 G--REGYRKLLDRTLELARYLAEELEKLGDFELVN 368 (460)
T ss_pred C--HhHHHHHHHHHHHHHHHHHHHHHhCCCcEeec
Confidence 2 26777788888899999999999997666654
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-08 Score=91.53 Aligned_cols=205 Identities=16% Similarity=0.090 Sum_probs=138.3
Q ss_pred CCCcEEEcCChHHHHHHHHHhhcCCC---CCC-CceEEEeCCCCCCc-HHHHHHhCCeeeeecCCc----------c---
Q 018172 58 DGRHIVIGTGSTQLYQAALYALSSPG---GPE-PISVVSAAPYYSQY-PAETDYLRSGLYKWDGDA----------N--- 119 (360)
Q Consensus 58 ~~~~i~~t~G~t~~l~~~~~~l~~~g---d~~-~~~vl~~~p~~~~~-~~~~~~~g~~~~~~~~~~----------~--- 119 (360)
..+.|.+.+++|+|+..++....+.. ..+ ..+++.-+.+|..- ..++...+......+.++ +
T Consensus 115 ~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t 194 (433)
T KOG1401|consen 115 SAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDST 194 (433)
T ss_pred CccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHH
Confidence 45689999999999999988764321 100 11366655665544 455554433333332211 1
Q ss_pred cccc-----CCCeeEEEEcCCCCCCcccch-H----HHHHHhhhcCcEEEEeecccCC-CCCcCC--CCCCccEEEeccc
Q 018172 120 TFDK-----NNGAYIEVVNSPNNPDGTIRE-A----VLAKVNRSAEGKLIHDLAYYWP-QYTPIT--GAADHDIMLFTLS 186 (360)
Q Consensus 120 ~~~~-----~~~~~~i~~~~p~NPtG~~~~-~----~~~~~~~~~~~~li~D~ay~~~-~~~~~~--~~~~~~i~~~S~s 186 (360)
.+.. ..+..+|++.--.---|.... + .++.+|+++++++|.||++.+. ...... ......-=+.++.
T Consensus 195 ~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~a 274 (433)
T KOG1401|consen 195 ALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVA 274 (433)
T ss_pred HHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCcceeeh
Confidence 1111 123566777655666676654 2 4567899999999999999852 222211 1122222366778
Q ss_pred cccCCCCceEEEEeecCHHHHHHHHHHHh---hccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 018172 187 KCTGHAGSRIGWALVKDTEVARKMTRFIE---LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIR 263 (360)
Q Consensus 187 K~~~~~G~r~G~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 263 (360)
|.++ .|+.+|..++ .+++.+.+..-.. ..+++.|+++..++...++.+.+. +++.++.+.-++.|+.+.+.+.
T Consensus 275 K~L~-gGlPigA~~v-~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~--e~~k~vs~~~k~L~~~l~e~~~ 350 (433)
T KOG1401|consen 275 KPLG-GGLPIGATGV-RDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDP--ETLKNVSKIGKELRKLLDEYLK 350 (433)
T ss_pred hhcc-CCceeEEEee-hHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999 9999999998 8999999864433 678899999999999999988776 8888888888888888888887
Q ss_pred hcC
Q 018172 264 QSG 266 (360)
Q Consensus 264 ~~~ 266 (360)
+.+
T Consensus 351 ~~~ 353 (433)
T KOG1401|consen 351 KTP 353 (433)
T ss_pred cCC
Confidence 774
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.9e-10 Score=100.69 Aligned_cols=215 Identities=20% Similarity=0.153 Sum_probs=136.5
Q ss_pred ccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH---HH
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP---AE 103 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~---~~ 103 (360)
|....-. .+|++.+++.+|. + ..+++.++|.+..+++..++++++. |++..++|.... ..
T Consensus 25 Yg~D~~~-----~~l~~~i~~l~g~-------e-~a~f~~sGT~An~~al~~~~~~~~~----vi~~~~aHi~~~E~ga~ 87 (290)
T PF01212_consen 25 YGEDPTT-----ARLEERIAELFGK-------E-AALFVPSGTMANQLALRAHLRPGES----VICADTAHIHFDETGAI 87 (290)
T ss_dssp TTSSHHH-----HHHHHHHHHHHTS-------S-EEEEESSHHHHHHHHHHHHHHTTEE----EEEETTEHHHHSSTTHH
T ss_pred cCCChhH-----HHHHHHHHHHcCC-------C-EEEEeCCCChHHHHHHHHHHhcCCc----eeccccceeeeeccchh
Confidence 6644443 9999999999994 4 4678888999999999999988887 999998766332 22
Q ss_pred HHHhCCeeeeecCCc-ccccc-----------C--CCeeEEEEcCCCCCC-cccch----HHHHHHhhhcCcEEEEeecc
Q 018172 104 TDYLRSGLYKWDGDA-NTFDK-----------N--NGAYIEVVNSPNNPD-GTIRE----AVLAKVNRSAEGKLIHDLAY 164 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~-~~~~~-----------~--~~~~~i~~~~p~NPt-G~~~~----~~~~~~~~~~~~~li~D~ay 164 (360)
....|.+++.++.+. ..+.. . +++++|++++|+|.. |.+++ +.+.++|+++|+.++.|-+-
T Consensus 88 ~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGAR 167 (290)
T PF01212_consen 88 EELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGAR 167 (290)
T ss_dssp HHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETT
T ss_pred hHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhh
Confidence 355799999998665 33432 1 578999999999864 77787 34567899999999999984
Q ss_pred cCC-------CCCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHH-----HHH
Q 018172 165 YWP-------QYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRA-----AKI 232 (360)
Q Consensus 165 ~~~-------~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~ 232 (360)
.+. ....+ ....+.+..|++|.+++++ |.+++.++++++.....+...+.+.......++ ...
T Consensus 168 l~~a~~~~~~~~~e~--~~~~D~v~~~~tK~~g~~~---Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~~~ 242 (290)
T PF01212_consen 168 LANAAAALGVSLAEI--AAGADSVSFGGTKNGGAPG---GAVLAGNKEFIAKARRQRKRLGGGMRQAGVLAAAELYQFAA 242 (290)
T ss_dssp HHHHHCHHHHHHHHH--HTTSSEEEEETTSTT-SSS---EEEEEESHHHHHHHHHHHHHHTHHHHHTTHHHHHHHHHHHH
T ss_pred HHHhhhcccccHHHH--hhhCCEEEEEEEccccccc---ceEEEechHHHHHHHHHHHHhccCeeecceeeeechhhHHH
Confidence 310 11111 2557889999999988777 555444888766654443322222111111111 122
Q ss_pred hcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 233 LGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+..+. .+. ....+-.++.+.+.+.|..+++.
T Consensus 243 l~~l~----~~~-~~~~~~~~~A~~La~~l~~~~~~ 273 (290)
T PF01212_consen 243 LRALE----LWL-ERARHANAMAKRLAAGLEALGGV 273 (290)
T ss_dssp HCHEE----CSH-HHHHCHHHHHHCHHHCHHEECEE
T ss_pred HHHHH----hhH-HHHHHHHHHHHHHHHHHHHCCCc
Confidence 22211 223 33344455567788888888654
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=96.92 Aligned_cols=278 Identities=15% Similarity=0.117 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC-C
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG-D 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~-~ 117 (360)
-.|++.+|+|+|. ++.|+...| -+++.-++.++.+.||- +.+.+-....+...+++..-.++.+.. |
T Consensus 142 ldlE~~iakF~G~-------E~aivYs~g-F~ti~S~ipafsKrGDI----i~~de~~nfaIq~GlqlSRS~i~~Fkhnd 209 (467)
T KOG1358|consen 142 LDLEKRIAKFMGT-------EDAIVYSYG-FSTIESAIPAFSKRGDI----IFVDEAVNFAIQKGLQLSRSTISYFKHND 209 (467)
T ss_pred cccHHHHHHhhCC-------cceeeeccc-cchhhhcchhhhccCcE----EEEehhhhHHHHHHHhhhhheeEEecCCC
Confidence 7889999999994 567888876 56667889999999997 777777777788888887777776653 3
Q ss_pred cccccc-----------CCC----eeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC----cCC----
Q 018172 118 ANTFDK-----------NNG----AYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT----PIT---- 173 (360)
Q Consensus 118 ~~~~~~-----------~~~----~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~----~~~---- 173 (360)
.++++. +++ .+-|++..-.-+||.+.+ +++.+++.|+...++.||.++.+... .+.
T Consensus 210 m~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~ 289 (467)
T KOG1358|consen 210 MEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFG 289 (467)
T ss_pred HHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCC
Confidence 222211 222 344566666668999988 77788888899999999999854221 122
Q ss_pred -CCCCccEEEeccccccCCCCceEEEEeecCHHHHHH--HHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHH
Q 018172 174 -GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARK--MTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRL 250 (360)
Q Consensus 174 -~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (360)
...+-+++++|+.-+++..| ||.++ +.-+++. |.....-.+.+.++....++..++..+ ++-..+.+.
T Consensus 290 v~~~~iDiv~~sm~~alas~G---gFc~G-~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~-----~~~p~~~~~ 360 (467)
T KOG1358|consen 290 VPITDIDIVTASMETALASGG---GFCAG-KSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIE-----EWNPEIVQP 360 (467)
T ss_pred CCccceeeeeecccccccccC---ceeec-ceeeEeeeeccccceeeeccCchhhhhhHHHHHHHH-----hhCcchhhh
Confidence 23456789999999998666 77776 4433322 221111122234444444444445433 233345666
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-----ch-----HHHHHHHHhhCeeeeCCCCC-
Q 018172 251 MSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-----ED-----EDCEKLLRAERIMARGGRRF- 319 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~l~~~gI~~~pg~~f- 319 (360)
++.....+...|+...++.+.....+. ..++.+.-+ +. +.+.+++.+ ++.+.-...-
T Consensus 361 L~~k~~~~H~~l~~~s~~~v~~~~~SP-----------i~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~ 428 (467)
T KOG1358|consen 361 LRAKVAKFHAALSSNSGFIVSGSPESP-----------IIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLE 428 (467)
T ss_pred hhccccccchhhhcCCceEEecCcCCc-----------eeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhh
Confidence 677777777777776545543332211 011222211 11 334555555 7776543322
Q ss_pred ----CCCCCeEEEEecC--ChHHHHHHHHHHHHHHh
Q 018172 320 ----GADAKYARVSMLS--REEIFNIFLERLSAIQG 349 (360)
Q Consensus 320 ----~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~ 349 (360)
..-+..+|++++. ++|+++++.+.|++...
T Consensus 429 ~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~ 464 (467)
T KOG1358|consen 429 KLERCPIPPSIRICVSAGMSEEELERAAELIKEVAS 464 (467)
T ss_pred hcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 1124579999977 99999999999998764
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-08 Score=96.47 Aligned_cols=262 Identities=9% Similarity=0.008 Sum_probs=143.8
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEe-CCCCCCcHHHHH-----HhCCe------eeeec-CCcccccc--
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSA-APYYSQYPAETD-----YLRSG------LYKWD-GDANTFDK-- 123 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~-~p~~~~~~~~~~-----~~g~~------~~~~~-~~~~~~~~-- 123 (360)
+.+.+++++++++..+++.... .|.. +|+.- .-.|........ ..|.. +..++ .|.+.++.
T Consensus 105 ~~v~f~~sGseA~e~AlklAr~~tgr~---~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l 181 (431)
T PRK06209 105 DMVKFCKNGSDATSAAVRLARAYTGRD---LVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRYNDIASLEALF 181 (431)
T ss_pred ceEEEecCHHHHHHHHHHHHHHHhCCC---eEEEeccCccccccccccccCCCCCCCChhHhccccccCCCCHHHHHHHH
Confidence 4799999999999999886532 2332 24443 222221110000 00110 11111 12222221
Q ss_pred --C-CCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCCCc--CCCCCCccEEEeccccccCCCCc
Q 018172 124 --N-NGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQYTP--ITGAADHDIMLFTLSKCTGHAGS 194 (360)
Q Consensus 124 --~-~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~~~--~~~~~~~~i~~~S~sK~~~~~G~ 194 (360)
. .+..+|++ -|. .|...+ +.+.++|+++|+++|+||++.+..... .....+-.--+.+++|.+| .|+
T Consensus 182 ~~~~~~~aavi~-Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~PDi~t~gK~lg-gG~ 257 (431)
T PRK06209 182 EDHPGRIACVIL-EPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVPDLSCFGKALG-NGF 257 (431)
T ss_pred HhCCCCEEEEEE-ccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCCcceeeehhhhc-CCc
Confidence 1 23445554 332 233333 467789999999999999986422211 1111111112477899999 788
Q ss_pred eEEEEeecCHHHHHH--HHH---H---HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 195 RIGWALVKDTEVARK--MTR---F---IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 195 r~G~~~~~~~~~~~~--l~~---~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
.+|++++ +.++++. +.. . ....+++.|+....++.+.++.+.+. ...++.++.-...++.+.+...+++
T Consensus 258 p~~av~~-~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~--~~~~~~~~~g~~l~~~L~~~~~~~~ 334 (431)
T PRK06209 258 AVSALAG-KREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDE--DVIERLHEQGAKLAAGVNEAAAEHG 334 (431)
T ss_pred ccEEEEE-HHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8999998 7888876 311 1 12345667778888888888877553 4455555555555555544444453
Q ss_pred CcccCCCCCcccccccccCCCCCCcccc--c---CCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHH
Q 018172 267 VFGLPEYPLEYCNFTGKFTNSHPGFAWL--E---SKED---EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFN 338 (360)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~ 338 (360)
........|.+.. ...+ + .+.. ..+.+.+.++||.+.| ++++...++++++
T Consensus 335 ~~~~vr~~G~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~----------l~is~~ht~~dId 393 (431)
T PRK06209 335 LQDHVRVSGRPCC-----------LTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS----------LVVSYAHGDADIE 393 (431)
T ss_pred CCeEEEeecceEE-----------EEEecCCcccCCcHHHHHHHHHHHHHCCccccc----------ccccccCCHHHHH
Confidence 2211111122110 1111 1 1111 3556677788997622 4666555999999
Q ss_pred HHHHHHHHHHhchh
Q 018172 339 IFLERLSAIQGGSI 352 (360)
Q Consensus 339 ~~~~~l~~~~~~~~ 352 (360)
++++++.+++.+.+
T Consensus 394 ~~l~~l~~~l~~~~ 407 (431)
T PRK06209 394 RTIDAVHGALGVYR 407 (431)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.2e-08 Score=99.38 Aligned_cols=198 Identities=15% Similarity=0.025 Sum_probs=126.5
Q ss_pred eeEEEEcC-CCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcCC--CCCCccEEEeccccccCCCC-ceE
Q 018172 127 AYIEVVNS-PNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPIT--GAADHDIMLFTLSKCTGHAG-SRI 196 (360)
Q Consensus 127 ~~~i~~~~-p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~~--~~~~~~i~~~S~sK~~~~~G-~r~ 196 (360)
.-++++.- .+.--|.+++ +.+.++|+++|+++|.||++.+. ...... ...+..-=+-+++|.++ .| +.+
T Consensus 585 iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~gKgLt-gG~~Pl 663 (817)
T PLN02974 585 IAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACYAKLLT-GGLVPL 663 (817)
T ss_pred EEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEeeccccc-CCCCcc
Confidence 33444443 2455677765 46788999999999999999853 222221 12222223556789998 88 699
Q ss_pred EEEeecCHHHHHHHHH------HHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHH----HhcC
Q 018172 197 GWALVKDTEVARKMTR------FIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVI----RQSG 266 (360)
Q Consensus 197 G~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~ 266 (360)
|.+++ .+++.+.+.. +....+++.|+++..++.+.|+.+.+. +..++..+.-.+..+++.+.| .+++
T Consensus 664 aa~l~-~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~--~~~~~l~~~~~~l~~~l~~~l~~~l~~~p 740 (817)
T PLN02974 664 AATLA-TEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDP--STNPNLIPPGSRLRELWDEELVRAISSLP 740 (817)
T ss_pred EEEEE-cHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99998 8999988842 223468889999999999999877653 444454444444444444444 4444
Q ss_pred CcccCCCCCcccccccccCCCCCCcccccCCc-----------hHHHHHHHH-hhCeeeeCCCCCCCCCCeEEEEe--cC
Q 018172 267 VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----------DEDCEKLLR-AERIMARGGRRFGADAKYARVSM--LS 332 (360)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~-~~gI~~~pg~~f~~~~~~~R~s~--~~ 332 (360)
.+.-+. +.+.++.+.+.+ ...+.+.+. ++||.++|. .+.+|+.. ..
T Consensus 741 ~V~~VR--------------g~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~------Gnvi~l~pP~~i 800 (817)
T PLN02974 741 NVERVV--------------SLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL------GNVVYLMCGPTT 800 (817)
T ss_pred CeeEEE--------------eeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec------CCEEEEeCCCCC
Confidence 322222 222233333211 145566667 899999982 24788743 34
Q ss_pred ChHHHHHHHHHHHHHH
Q 018172 333 REEIFNIFLERLSAIQ 348 (360)
Q Consensus 333 ~~e~~~~~~~~l~~~~ 348 (360)
++|+++++++++.+.+
T Consensus 801 ~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 801 SPETCTRLLRKVYRRL 816 (817)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998876
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=88.39 Aligned_cols=278 Identities=13% Similarity=0.061 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc------C--CCCCCCceEEEeCCCCCCcHHHHHHhCCe
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS------S--PGGPEPISVVSAAPYYSQYPAETDYLRSG 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~------~--~gd~~~~~vl~~~p~~~~~~~~~~~~g~~ 110 (360)
.++.+.++++++- +-|+-++-+.|+...++.... + |.+. .+++....+|..-.-.+..++.+
T Consensus 104 ~~f~~~vt~lf~~--------~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nk--a~il~~~~nFhGrT~~ais~s~d 173 (427)
T KOG1402|consen 104 GEFAEYVTKLFGY--------DKVLPMNTGAEAVETACKLARKWGYRKKNIPKNK--AKILSAENNFHGRTLGAISLSTD 173 (427)
T ss_pred HHHHHHHHHhcCc--------ceeeecccchhHHHHHHHHHHHHHHhhccCCccc--eeEEEecccccCceeeeEEecCC
Confidence 5677777777763 468888777999888887664 2 2232 24666666665444333333333
Q ss_pred eee--------------ecC-Ccccccc---CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC
Q 018172 111 LYK--------------WDG-DANTFDK---NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP 167 (360)
Q Consensus 111 ~~~--------------~~~-~~~~~~~---~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~ 167 (360)
... ++- |.+.++. +++..++++.--+...|++.| +...++|.+|++++|.||++.+-
T Consensus 174 ~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl 253 (427)
T KOG1402|consen 174 PDSWDGFGPFLPGVVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGL 253 (427)
T ss_pred cchhhccCCCCCCcceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcc
Confidence 321 111 1122222 455555565555778999877 46788999999999999999852
Q ss_pred C--CCcCCCCCCc---cEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 168 Q--YTPITGAADH---DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 168 ~--~~~~~~~~~~---~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
. -.-+.-.+++ ++++ +.|+++-.=..+..+++ +++++-.+.......+++.|+++...+.++|+.+.+
T Consensus 254 ~RTGk~la~d~env~PDivi--lgKalSGG~~Pvsavl~-~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~e---- 326 (427)
T KOG1402|consen 254 ARTGKLLACDYENVRPDIVI--LGKALSGGVYPVSAVLA-DDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVE---- 326 (427)
T ss_pred cccCcEEEeehhhcCCCeEE--EeccccCCeeeeEEEEe-cHHHHhccCCCccccccCCChHHHHHHHHHHHHHHH----
Confidence 1 1222222222 2332 34777633346777887 899998888777778899999999999999986543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC----c-h--HHHHHHHHhhCeeeeC
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK----E-D--EDCEKLLRAERIMARG 315 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~--~~~~~~l~~~gI~~~p 315 (360)
++..++.+..=+.+.++|++++... +.. -..+++.+.+.-+.+. + . -++.-.|++.|++.-|
T Consensus 327 --ekL~era~~lG~~l~~~L~~l~~~~-p~~--------v~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkp 395 (427)
T KOG1402|consen 327 --EKLVERAAKLGEILRDQLNKLQKKF-PHV--------VKEVRGRGLLNAIVINPSKTSGQDAWDVCLALKENGLLAKP 395 (427)
T ss_pred --HHHHHHHHHHHHHHHHHHHhccccc-cch--------hheeeccceEEEEEeccccccchhHHHHHHcccccccccCC
Confidence 3455555566667777777774211 000 0123445544333332 1 1 4455677788998877
Q ss_pred CCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHHh
Q 018172 316 GRRFGADAKYARVSM--LSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 316 g~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~ 349 (360)
-+ .+.+||.. ..+++++++.+++|.+.+.
T Consensus 396 tH-----~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 396 TH-----GNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred CC-----CCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 33 45899974 4499999999999998764
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.1e-07 Score=91.39 Aligned_cols=271 Identities=13% Similarity=0.075 Sum_probs=169.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc-CCCCCCCceEEEeCCCCCCcHHHHH----HhCCeeeee
Q 018172 40 ELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS-SPGGPEPISVVSAAPYYSQYPAETD----YLRSGLYKW 114 (360)
Q Consensus 40 ~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~-~~gd~~~~~vl~~~p~~~~~~~~~~----~~g~~~~~~ 114 (360)
++...++++.|. +..|.-+..++|++...++.+.. +.+. ..+|++++-.|+.+..+++ ..|++++.+
T Consensus 113 e~Qt~i~eLtGm------~~aNaSl~d~atA~aEa~~~a~~~~~~~--~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~ 184 (939)
T TIGR00461 113 NFQTVVSDLTGL------PVANASLLDEGTAAAEAMALSFNVSKKK--ANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVV 184 (939)
T ss_pred HHHHHHHHHHCC------ChhhhhccchhhHHHHHHHHHHHhhcCC--CCEEEECCCCCcchHHHHHHHHHhcCcEEEEE
Confidence 455567777775 44466777788888887776642 2221 1249999999998886655 579998888
Q ss_pred cCCccccccCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccccCCC-
Q 018172 115 DGDANTFDKNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTGHA- 192 (360)
Q Consensus 115 ~~~~~~~~~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~~~~- 192 (360)
+.+ .+...-++.++++.+|| -+|.+.+ +.+.++++++|.+++++.-........-++..+.+|++++..+ ||+|
T Consensus 185 ~~~--~l~~~~~~~~v~~q~Pn-~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~-fg~p~ 260 (939)
T TIGR00461 185 DCS--DIKKAVDVFGCLLQYPA-TDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQR-FGVPM 260 (939)
T ss_pred cHH--HHhhcCCEEEEEEECCC-CCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCc-cCCCC
Confidence 643 34332257788888997 5999977 5665666668999998543222233344567788888665444 5541
Q ss_pred ---CceEEEEeecCHHHHHHHHH-HHh----hc--------------------cccCChHHHHHH----HHHhcccCCCc
Q 018172 193 ---GSRIGWALVKDTEVARKMTR-FIE----LG--------------------SIGVSKESQLRA----AKILGIVSDDY 240 (360)
Q Consensus 193 ---G~r~G~~~~~~~~~~~~l~~-~~~----~~--------------------~~~~~~~~~~~~----~~~l~~~~~~~ 240 (360)
|=-.|++.+ .+++.+.+-- ... .. ..+.-...|... ...+..+ +
T Consensus 261 g~GGP~aG~~a~-~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~-G-- 336 (939)
T TIGR00461 261 GYGGPHAAFFAV-KDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYH-G-- 336 (939)
T ss_pred CCCCCceeeeee-cHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHH-C--
Confidence 223778877 6666666411 000 00 000001122211 1112221 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--chHHHHHHHHhhCeeeeCCCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--EDEDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gI~~~pg~~ 318 (360)
...+.++.++...+..++.+.|.+. ++.+..+ .+ |. -+.++++ +.+.+.+.+.++||.++..
T Consensus 337 ~~GL~~iA~~~~~~a~~l~~~L~~~-G~~~~~~--~f--F~---------~~~v~~~~~~~~~i~~~~~~~gi~l~~~-- 400 (939)
T TIGR00461 337 PKGLKNIARRIHSLTSILANGLEND-PHELINK--TW--FD---------TLTVKVGNGISSELLKAAEEFNINLRAV-- 400 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC--Cc--cc---------eEEEEeCCCCHHHHHHHHHHCCCeeeec--
Confidence 2668888888888999999999885 5555433 11 10 1334544 3377888889999997652
Q ss_pred CCCCCCeEEEEecC--ChHHHHHHHHHHH
Q 018172 319 FGADAKYARVSMLS--REEIFNIFLERLS 345 (360)
Q Consensus 319 f~~~~~~~R~s~~~--~~e~~~~~~~~l~ 345 (360)
.++.+++|+.- ++++++.+++.+.
T Consensus 401 ---~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 401 ---DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred ---CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 24689999855 8999999999995
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-08 Score=81.97 Aligned_cols=65 Identities=20% Similarity=0.447 Sum_probs=57.4
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cC--CCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VD--NAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ 99 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~--~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~ 99 (360)
..|++..|. ++||+++++|++. +| ..++++ +|++|+|+++++..++.+|+++||. |+++.|+|+.
T Consensus 86 a~Y~~~~G~-----~~lR~AiA~~l~~~~g~~v~~~pd-~Ivvt~Ga~~al~~l~~~l~dpGD~----VlVp~P~Y~~ 153 (153)
T PLN02994 86 ALFQDYHGL-----ANFRKAIANFMAEARGGRVKFDAD-MIVLSAGATAANEIIMFCIADPGDA----FLVPTPYYAA 153 (153)
T ss_pred hcCCCCCCc-----HHHHHHHHHHHHHHhCCCCccchh-heEEcCCHHHHHHHHHHHHcCCCCE----EEEeCCCCCC
Confidence 559999998 9999999999864 45 456664 8999999999999999999999999 9999999974
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-07 Score=85.82 Aligned_cols=273 Identities=18% Similarity=0.157 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~~ 114 (360)
-++...++++.|. +..+.-+-.|++..-..+..+....+.+ ..+|++++-.|+.+..+++. .|.+++.+
T Consensus 113 fe~Qs~i~eLTGm------dvaNaSlyd~atA~aEa~~ma~r~~~~~-~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~ 185 (429)
T PF02347_consen 113 FEYQSMICELTGM------DVANASLYDGATAAAEAMLMAVRATKRK-RNKVLVPESLHPQTRAVLRTYAAPLGIEIVEV 185 (429)
T ss_dssp HHHHHHHHHHHTS------SEE-SEBSSCCHHHHHHHHHHHHHHTT----EEEEETTS-CHHHHHHHHHCCHCCEEEEEE
T ss_pred HHHHHHHHHhhCC------CccCCCCCChhHHHHHHHHHHHHhcccC-CcEEEEcCCcChhhHHHHHHhhhhCCeEEEEe
Confidence 3556667777775 2222344457777767665554211110 12499999999998876554 58899999
Q ss_pred cCCccccccCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC---CCcCCCCCCccEEEeccccccC
Q 018172 115 DGDANTFDKNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ---YTPITGAADHDIMLFTLSKCTG 190 (360)
Q Consensus 115 ~~~~~~~~~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~---~~~~~~~~~~~i~~~S~sK~~~ 190 (360)
+.+.++...++++.+|++.+||. .|.+-+ +++.++++++|.+++. .+ ++. ...-++..+.+|++++ +|.||
T Consensus 186 ~~~~~~~~d~~~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~~gal~~~-~a--d~~aL~~l~~Pge~GADI~vg~-~Q~fg 260 (429)
T PF02347_consen 186 PLDEDGTTDDDDTAAVMVQNPNT-FGVFEDIKEIADIAHAAGALVIV-GA--DPNALGGLKSPGEYGADIVVGE-HQTFG 260 (429)
T ss_dssp -BBTTCSB-STTEEEEEEESS-T-TSB--THHHHHHHHHHTT-EEEE-CG--GCCGCCTC--GGGGT-SEEEEC-CTTTT
T ss_pred cccccCCccccCeEEEEeecCCC-CceEeeHHHHHHHHHHcCCEEEE-ec--CHHHHhCcCChhhcCccEEeeC-CCCCc
Confidence 88777666688899999999984 898877 5566667778988876 33 322 1222357788888777 78777
Q ss_pred CC----CceEEEEeecCHHHHHHH----------------------------HHHHhhccccCCh-HHHHHHHHHhcccC
Q 018172 191 HA----GSRIGWALVKDTEVARKM----------------------------TRFIELGSIGVSK-ESQLRAAKILGIVS 237 (360)
Q Consensus 191 ~~----G~r~G~~~~~~~~~~~~l----------------------------~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 237 (360)
.| |=..|++.+ ..++++.+ ++.+.....+.|. +...++...+..+
T Consensus 261 ~p~~~GGP~~G~~a~-~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~- 338 (429)
T PF02347_consen 261 IPMGFGGPGAGFFAV-REDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYL- 338 (429)
T ss_dssp ---CCC-S--EEEEE--GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHH-
T ss_pred ccCCCCCCCeeeEEE-hhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHh-
Confidence 43 223567777 55555444 2222222222222 2222333333322
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCC
Q 018172 238 DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGR 317 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~ 317 (360)
+ .+-+.++.+....+..++.+.|.++....+..+ .+.. |+....++ ..+.+ +.++++.-- .
T Consensus 339 G--~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~--~f~e-----------~v~~~~~~-~~~~~-l~~~~~~~g--l 399 (429)
T PF02347_consen 339 G--PEGLREIAERIHLNAHYLAERLKKIYGLPFDNP--FFFE-----------FVVVFSKD-KEVEE-LLKRGIEGG--L 399 (429)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSS--SBSS-----------EEEEESS--HHHHH-HHHTT------E
T ss_pred C--HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC--Ccee-----------eeeecCCc-HHHHH-HHHHHHhcC--C
Confidence 3 288999999999999999999999733332211 1111 23333333 33333 334444311 1
Q ss_pred CCC-CCCCeEEEEecC--ChHHHHHHHHHH
Q 018172 318 RFG-ADAKYARVSMLS--REEIFNIFLERL 344 (360)
Q Consensus 318 ~f~-~~~~~~R~s~~~--~~e~~~~~~~~l 344 (360)
.+. .+.+.+-+|++- ++|+|+++++++
T Consensus 400 ~~~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 400 NLRYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp EEGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred CccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 111 134577778755 789999998864
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.2e-06 Score=74.25 Aligned_cols=159 Identities=14% Similarity=0.144 Sum_probs=99.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEc--CChHHHHHHHHHhhcCCCCCCCceEEE-eCCCCCCcHHHH----------
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIG--TGSTQLYQAALYALSSPGGPEPISVVS-AAPYYSQYPAET---------- 104 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t--~G~t~~l~~~~~~l~~~gd~~~~~vl~-~~p~~~~~~~~~---------- 104 (360)
-+.|.+..|+.++. ++.++=. .++|++|..++.+++.|||+ ++. .-.=|.-...++
T Consensus 56 Rd~le~iyA~vfga-------E~ALVRpq~vSGTHAi~~~Lfg~LrpGD~----ll~~tG~PYDTL~~VIG~~g~~~GSL 124 (403)
T PF06838_consen 56 RDKLERIYADVFGA-------EDALVRPQFVSGTHAIALALFGVLRPGDE----LLSITGKPYDTLEEVIGIRGNGPGSL 124 (403)
T ss_dssp HHHHHHHHHHHCT--------SEEEEETTS-SHHHHHHHHHHHH--TT-E----EEESSSS--CCHHHHHTSSSSSSSST
T ss_pred HHHHHHHHHHHhCc-------hhhhhcccccchHHHHHHHHHhcCCCCCe----EEEcCCCchhhHHHHhCCCCCCCCCh
Confidence 38888888888884 4455522 45699999999999999998 664 334455555553
Q ss_pred HHhCCeeeeecCCcc-cccc-------CCCeeEEEEcCCCCCCcccch-----HHH----HHHhh-hcCcEEEEeecccC
Q 018172 105 DYLRSGLYKWDGDAN-TFDK-------NNGAYIEVVNSPNNPDGTIRE-----AVL----AKVNR-SAEGKLIHDLAYYW 166 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~-~~~~-------~~~~~~i~~~~p~NPtG~~~~-----~~~----~~~~~-~~~~~li~D~ay~~ 166 (360)
+..|.+...+++..+ .++. ++++|+|++.-- +|+... +++ ..+.+ +.++++++|++|++
T Consensus 125 ~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~~tk~v~IQRS---rGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGE 201 (403)
T PF06838_consen 125 KEFGIKYREVPLTEDGTIDWEAIKKALKPNTKMVLIQRS---RGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGE 201 (403)
T ss_dssp GGGT-EEEE--B-TTSSB-HHHHHHHHHTTEEEEEEE-S----TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTT
T ss_pred HHhCceeEEEeecCCCCcCHHHHHHhhccCceEEEEecC---CCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcce
Confidence 456777888876653 3322 478999988653 444422 222 22222 38999999999997
Q ss_pred CCCCcCCCCCCccEEEeccccccC----CCCceEEEEeecCHHHHHHHHHHH
Q 018172 167 PQYTPITGAADHDIMLFTLSKCTG----HAGSRIGWALVKDTEVARKMTRFI 214 (360)
Q Consensus 167 ~~~~~~~~~~~~~i~~~S~sK~~~----~~G~r~G~~~~~~~~~~~~l~~~~ 214 (360)
..-..-+...+.+++.+|+-|..| .+| ||+++ ..++++......
T Consensus 202 FvE~~EP~~vGADl~aGSLIKNpGGgiAptG---GYIaG-r~~lVe~~a~RL 249 (403)
T PF06838_consen 202 FVETQEPTEVGADLMAGSLIKNPGGGIAPTG---GYIAG-RKDLVERAAYRL 249 (403)
T ss_dssp TTSSS-GGGGT-SEEEEETTSGGGTTT-SS----EEEEE-SHHHHHHHHHHH
T ss_pred eccccCccccchhheeccceeCCCCCccCcC---CEEec-hHHHHHHHHhhh
Confidence 666666678889999999999876 344 89998 899999987654
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-06 Score=79.82 Aligned_cols=284 Identities=13% Similarity=0.086 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCC-------C-CCCcHHHHHHhCC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAP-------Y-YSQYPAETDYLRS 109 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p-------~-~~~~~~~~~~~g~ 109 (360)
.+|++.+++++|. + .++.|..++.+-.+++..+++ +|+. +++..+ . |......+...|+
T Consensus 77 ~~Lee~vael~G~-------E-~alpthqGRgaE~Il~~~~~~~~g~e----~g~~~~~~~v~hn~~fett~g~a~l~G~ 144 (467)
T TIGR02617 77 YALAESVKNIFGY-------Q-YTIPTHQGRGAEQIYIPVLIKKREQE----KGLDRSKMVAFSNYFFDTTQGHSQINGC 144 (467)
T ss_pred HHHHHHHHHHhCC-------c-eEEECCCCchHHHHHHHhhccccccc----ccccccccccceEEEEecchHHHHHcCc
Confidence 8999999999994 4 578887779998899999988 6776 554332 2 2222345667788
Q ss_pred eeeeecCC----------c-ccccc--------C---CCeeEEEEcCCCCC-Ccccch----HHHHHHhhhcCcEEEEee
Q 018172 110 GLYKWDGD----------A-NTFDK--------N---NGAYIEVVNSPNNP-DGTIRE----AVLAKVNRSAEGKLIHDL 162 (360)
Q Consensus 110 ~~~~~~~~----------~-~~~~~--------~---~~~~~i~~~~p~NP-tG~~~~----~~~~~~~~~~~~~li~D~ 162 (360)
.++.+..+ . ..++. . ++.-.+.+.--+|- -|..+| +.+.++|+++|+.++.|.
T Consensus 145 ~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDg 224 (467)
T TIGR02617 145 TARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDS 224 (467)
T ss_pred eeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEh
Confidence 87765321 1 11111 1 12222222222343 366666 467789999999999997
Q ss_pred cccCC----------CCCcC--CC-----CCCccEEEeccccccCCC-CceEEEEeecCH---HHHHHHHHHH----hh-
Q 018172 163 AYYWP----------QYTPI--TG-----AADHDIMLFTLSKCTGHA-GSRIGWALVKDT---EVARKMTRFI----EL- 216 (360)
Q Consensus 163 ay~~~----------~~~~~--~~-----~~~~~i~~~S~sK~~~~~-G~r~G~~~~~~~---~~~~~l~~~~----~~- 216 (360)
+-.+. .+... .. ....+.+..|+||-++.| | |+++++++ ++.+.++... .+
T Consensus 225 ARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~ 301 (467)
T TIGR02617 225 ARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMG---GLLCFKDDSFFDVYTECRTLCVVQEGFP 301 (467)
T ss_pred HHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCccc---ceEEecchhHHHHHHHHHhhcccccCCc
Confidence 54321 11111 11 145678899999998876 4 67777677 4444443322 11
Q ss_pred ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC
Q 018172 217 GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES 296 (360)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (360)
+..+.+.-...+++..|....+. .++... .+..++|.+.|.+. ++.+.. .|+.+.|+|... +...+
T Consensus 302 tYGGlagrd~ea~a~Gl~e~~~~--~yl~~r----i~qv~yl~~~L~~~-Gvpi~~-~Gghav~iDa~~------~lphi 367 (467)
T TIGR02617 302 TYGGLEGGAMERLAVGLYDGMNL--DWLAYR----INQVQYLVNGLEEI-GVVCQQ-AGGHAAFVDAGK------LLPHI 367 (467)
T ss_pred CcCchhHHHHHHHHhhhhhcccH--HHHHHH----HHHHHHHHHHHHhC-CCcEEe-cCccEEEEehhh------hCCCC
Confidence 22256666666766666633222 333333 33346778888887 455555 777766653221 12223
Q ss_pred C-----chHHHHHHHHhhCeeee-CCCC-CCC----------CCCeEEEEecC---ChHHHHHHHHHHHHHHhch
Q 018172 297 K-----EDEDCEKLLRAERIMAR-GGRR-FGA----------DAKYARVSMLS---REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 297 ~-----~~~~~~~~l~~~gI~~~-pg~~-f~~----------~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~ 351 (360)
+ ....+..+-.+.||-.. -|+. ++. .-..+|+.+-. +.+.++...+++..+.++.
T Consensus 368 p~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~ 442 (467)
T TIGR02617 368 PADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_pred ChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhhh
Confidence 2 33667777778888632 2332 111 12469999855 8899999999999998764
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-07 Score=86.50 Aligned_cols=192 Identities=18% Similarity=0.120 Sum_probs=121.0
Q ss_pred CCcEEEcCChHHHHHHHHHhhc------C-CCCCCCceEEEeCCCCCCcHHHHHHhCC-------------eeeeecCCc
Q 018172 59 GRHIVIGTGSTQLYQAALYALS------S-PGGPEPISVVSAAPYYSQYPAETDYLRS-------------GLYKWDGDA 118 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~l~------~-~gd~~~~~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~ 118 (360)
.+.+.+++++++++..+++... . ++.. +|+....+|......+-..+. .+..+|.+.
T Consensus 76 ~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~---~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~ 152 (339)
T PF00202_consen 76 LDRVFFANSGSEAVEAALKLARQYHNKRAYTGRR---KILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPD 152 (339)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTT---EEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTC
T ss_pred cceeeeccCchHHHHHHHHHhhcccccccccCCc---eEEEeeeeeeccCcccccccCCccccccccccccccccccCCc
Confidence 4589999999999999988876 2 2332 588888888876543333211 122333321
Q ss_pred -cc--------------cc-c-CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcCC--
Q 018172 119 -NT--------------FD-K-NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPIT-- 173 (360)
Q Consensus 119 -~~--------------~~-~-~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~~-- 173 (360)
.. +. . .++..++++.--..-.|...+ +.+.++|+++|+++|.||++.+. ......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~ 232 (339)
T PF00202_consen 153 PAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFAS 232 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGH
T ss_pred cchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccce
Confidence 11 00 0 245556666544444676654 57788999999999999999853 222222
Q ss_pred --CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 174 --GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 174 --~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
.....++++. +|.++ .|+.+|.+++ .+++.+.+.......+++.++++..++.+.|+.+... ...++.++.=
T Consensus 233 ~~~gv~PDiv~~--gK~l~-gG~p~sav~~-~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~--~~~~~~~~~g 306 (339)
T PF00202_consen 233 EHYGVDPDIVTF--GKGLG-GGLPISAVLG-SEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEE--DLLERVRELG 306 (339)
T ss_dssp HHHTSSSSEEEE--EGGGG-TTSSEEEEEE-EHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHT--THHHHHHHHH
T ss_pred ecccccCccccc--ccchh-hhhhcccccc-cchhhccccccccccccccchHhhhhhhhHHHhhccH--HHHHHHHHHH
Confidence 1233355544 59999 7899999998 7898888865555577888999999999988866543 3444444443
Q ss_pred HHHHHHHH
Q 018172 252 SERWNMLR 259 (360)
Q Consensus 252 ~~~~~~l~ 259 (360)
...++.|.
T Consensus 307 ~~l~~~L~ 314 (339)
T PF00202_consen 307 ERLREGLR 314 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344444
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-06 Score=80.16 Aligned_cols=199 Identities=17% Similarity=0.101 Sum_probs=138.8
Q ss_pred CCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeC-----CCCCCcHHHHHHhCCeeeeecCCcc----ccc--cCCCe
Q 018172 59 GRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAA-----PYYSQYPAETDYLRSGLYKWDGDAN----TFD--KNNGA 127 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~-----p~~~~~~~~~~~~g~~~~~~~~~~~----~~~--~~~~~ 127 (360)
+..++++++.+.++.+++..+.+++. ++++. +...++.++++..|++++.+-.... ++. .++++
T Consensus 83 aea~~ivnnn~aAVll~~~al~~~~E-----vVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~tn~t~~~d~~~AIne~t 157 (395)
T COG1921 83 AEAAAIVNNNAAAVLLTLNALAEGKE-----VVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTTNRTHLKDYELAINENT 157 (395)
T ss_pred hhheeeECCcHHHHHHHHhhhccCCe-----EEEEccccccCCCCChhHHHHHcCCEEEEecccCcCCHHHHHHHhccCC
Confidence 35799999999999999999987433 44331 6889999999999999998853322 222 25778
Q ss_pred eEEEEcCCCCC--CcccchHHHHHHhhhcCcEEEEeecccCC--CCCcCC--CCCCccEEEeccccccCCCCceEEEEee
Q 018172 128 YIEVVNSPNNP--DGTIREAVLAKVNRSAEGKLIHDLAYYWP--QYTPIT--GAADHDIMLFTLSKCTGHAGSRIGWALV 201 (360)
Q Consensus 128 ~~i~~~~p~NP--tG~~~~~~~~~~~~~~~~~li~D~ay~~~--~~~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~ 201 (360)
++++-.+-+|- +|.+--+.+.++++++++++++|.+-... ..+.+. -..+.+++++|..|.++ |-+.|.+++
T Consensus 158 a~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllg--GPqaGii~G 235 (395)
T COG1921 158 ALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLG--GPQAGIIVG 235 (395)
T ss_pred eeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcC--CCccceEec
Confidence 88755554442 33333367888999999999999986431 111221 25678999999999987 667898888
Q ss_pred cCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCC-chhHHHHHHHHHHHHHHHHHHHHHhc
Q 018172 202 KDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDD-YPNFFEYGRRLMSERWNMLRQVIRQS 265 (360)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (360)
..++++.+++..-....-...+...+..++|+..... -..........+.+..+.+.+.....
T Consensus 236 -kKelI~~lq~~~l~Ralrv~K~tla~l~~aLe~y~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l 299 (395)
T COG1921 236 -KKELIEKLQSHPLKRALRVDKETLAALEAALELYLQPEILGERLRTLRLLTQPAEALLAQAGRL 299 (395)
T ss_pred -hHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHHHcCchhhhhhhHHHHhhccHHHHHHHHhhhh
Confidence 8999999988877777788889998888888854432 11333344444455555555555444
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.5e-06 Score=79.86 Aligned_cols=231 Identities=18% Similarity=0.125 Sum_probs=143.5
Q ss_pred HHHHHHHHHHH-hhcCCCCC----CCCcEEEcCChHHHHHHHHHhhcC--------CCC--CCCceEEEeCCCCCCcHHH
Q 018172 39 PELAEAINNLH-HVVDNAVS----DGRHIVIGTGSTQLYQAALYALSS--------PGG--PEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 39 ~~lr~~la~~~-~~~~~~~~----~~~~i~~t~G~t~~l~~~~~~l~~--------~gd--~~~~~vl~~~p~~~~~~~~ 103 (360)
.++++.+.+++ ...|.+.. ....-++|+|+|+++...+....+ .|. ..+..+++++-+|.+...+
T Consensus 78 ~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Ka 157 (373)
T PF00282_consen 78 TEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKA 157 (373)
T ss_dssp HHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHH
T ss_pred ccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHh
Confidence 67777777664 34454411 124678899999998777655421 121 1224588899899999999
Q ss_pred HHHhCCeeeeecCCccc-ccc------------CCC-eeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCC-
Q 018172 104 TDYLRSGLYKWDGDANT-FDK------------NNG-AYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWP- 167 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~-~~~------------~~~-~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~- 167 (360)
+..+|..++.++.|.++ ++. +.. +-+|+.+..+-.||.+=+ +++.++|+++++|+.+|.+|++.
T Consensus 158 a~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~ 237 (373)
T PF00282_consen 158 ARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSA 237 (373)
T ss_dssp HHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGG
T ss_pred cceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeecccccccc
Confidence 99999999999988643 322 122 335677777888999966 78888899999999999999862
Q ss_pred ----CCCcCC-CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHH-----HHH----------hh--ccccCCh-H
Q 018172 168 ----QYTPIT-GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMT-----RFI----------EL--GSIGVSK-E 224 (360)
Q Consensus 168 ----~~~~~~-~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~-----~~~----------~~--~~~~~~~-~ 224 (360)
.+.... +....+=+..+++|.++ ....+|+++.+++....... ... .. .+...+. .
T Consensus 238 ~~~~~~~~~~~gi~~adSit~d~HK~l~-~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~ 316 (373)
T PF00282_consen 238 LLSPEYRHLLFGIERADSITIDPHKWLG-VPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRF 316 (373)
T ss_dssp GGHCTTGGGGTTGGGESEEEEETTTTTS--SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHH
T ss_pred cccccccccccccccccccccchhhhhc-CCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccccc
Confidence 222221 23333456678999777 66789999887765444321 000 00 0111222 2
Q ss_pred HHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q 018172 225 SQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEY 273 (360)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 273 (360)
....+...++.+ + .+.+.+..++..+..+++.+.|++.+.+++..+
T Consensus 317 ~alk~w~~l~~~-G--~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~ 362 (373)
T PF00282_consen 317 RALKLWATLKSL-G--REGYRERIRRCIELARYLADRLRKDPRFELVNE 362 (373)
T ss_dssp HHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEESST
T ss_pred hHHHHHHHHHhc-C--HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 223333344422 2 267777788888888999999999987777643
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=85.70 Aligned_cols=212 Identities=16% Similarity=0.129 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCC------CCCcHHHHHHhCCeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY------YSQYPAETDYLRSGLY 112 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~------~~~~~~~~~~~g~~~~ 112 (360)
..+++.++...+. + .-+++++...++.+++..+.. |.+ |+++.-. -..+..+++..|++++
T Consensus 50 ~~v~~ll~~ltgA-------e-aA~VvNnnaAAv~L~l~~la~-~~E----vIvsRGelVeiGgsFRip~vm~~sGa~lv 116 (367)
T PF03841_consen 50 AHVEELLCELTGA-------E-AALVVNNNAAAVLLALNTLAK-GKE----VIVSRGELVEIGGSFRIPDVMRQSGARLV 116 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccc-------c-ccccccccccccccccccccc-ccc----ccccccccccccccccccccccccccccc
Confidence 4445556666663 3 577778888888888888874 444 7776422 2236678888899998
Q ss_pred eecCC----cccccc--CCCeeEEEEcCCCCC--Cccc---chHHHHHHhhhcCcEEEEeeccc---------CCCCCcC
Q 018172 113 KWDGD----ANTFDK--NNGAYIEVVNSPNNP--DGTI---REAVLAKVNRSAEGKLIHDLAYY---------WPQYTPI 172 (360)
Q Consensus 113 ~~~~~----~~~~~~--~~~~~~i~~~~p~NP--tG~~---~~~~~~~~~~~~~~~li~D~ay~---------~~~~~~~ 172 (360)
.+-.. ...+.. +++|.+++-.+++|. .|.. --+++.+++++|++++++|..-+ .+.-+.+
T Consensus 117 EVGttN~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v 196 (367)
T PF03841_consen 117 EVGTTNRTHLSDYEKAITENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTV 196 (367)
T ss_dssp --------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT--------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHH
Confidence 77432 223333 678999988888886 3333 33788888999999999998753 1112233
Q ss_pred C--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCC--------chh
Q 018172 173 T--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDD--------YPN 242 (360)
Q Consensus 173 ~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~ 242 (360)
. -..+.+++++|-.|.+|-| ..|.+++ ..++++.+++..-....-.......++.+.|+...+. ...
T Consensus 197 ~~~~~~GaDlV~fSGdKlLGGP--QaGiI~G-kk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ 273 (367)
T PF03841_consen 197 QEYLAAGADLVTFSGDKLLGGP--QAGIIVG-KKELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLR 273 (367)
T ss_dssp --CCCCT-SEEEEETTSSSSS---S-EEEEE-EHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH---------------
T ss_pred HHHhhcCCCEEEEECCCcCCCC--CeEEEEe-CHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 2 2567899999999999844 4798888 8999999998877778888999988888877743321 124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
.+....+.++++.+.+...|+...
T Consensus 274 ml~~~~~~L~~rA~~l~~~l~~~~ 297 (367)
T PF03841_consen 274 MLTQSLEELRARAERLAAQLKAAL 297 (367)
T ss_dssp ------------------------
T ss_pred cccccccccccccccccccccccc
Confidence 456666777788888888777653
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.3e-06 Score=76.50 Aligned_cols=271 Identities=16% Similarity=0.128 Sum_probs=155.7
Q ss_pred EEEcCChHHHHHHHHHhh---cCC-CCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCcccccc---------CCCee
Q 018172 62 IVIGTGSTQLYQAALYAL---SSP-GGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFDK---------NNGAY 128 (360)
Q Consensus 62 i~~t~G~t~~l~~~~~~l---~~~-gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~ 128 (360)
=..|+|+|+++.+.-..- ... -+.+...++++.-.+.++...++-++.++..++.+...+.. +++|.
T Consensus 141 g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eNti 220 (491)
T KOG1383|consen 141 GCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDENTI 220 (491)
T ss_pred CccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEEeeeccccceEecHHHHHHHhccceE
Confidence 346788899844433322 111 11111237777788888888888899999999988765544 57999
Q ss_pred EEEEcCCCCCCcccch-HHHHHHhhh-cCcEEEEeecccCCCCC-cCC---CCCCccEE----EeccccccCCCCceEEE
Q 018172 129 IEVVNSPNNPDGTIRE-AVLAKVNRS-AEGKLIHDLAYYWPQYT-PIT---GAADHDIM----LFTLSKCTGHAGSRIGW 198 (360)
Q Consensus 129 ~i~~~~p~NPtG~~~~-~~~~~~~~~-~~~~li~D~ay~~~~~~-~~~---~~~~~~i~----~~S~sK~~~~~G~r~G~ 198 (360)
+++.+.|+-|+|..=+ +.+.++..+ +++.+.+|.+-+.+-.+ ... ...-++.. .-+-+| +|+.--..||
T Consensus 221 ~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HK-YGl~~~G~~~ 299 (491)
T KOG1383|consen 221 MLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHK-YGLAPAGSSW 299 (491)
T ss_pred EEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCceeEeeccce-eeeeecCcEE
Confidence 9999999999999977 556555554 99999999987753322 111 11112222 235567 6655555899
Q ss_pred EeecCHHHHHH-H-------HHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 018172 199 ALVKDTEVARK-M-------TRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGL 270 (360)
Q Consensus 199 ~~~~~~~~~~~-l-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 270 (360)
++-++.++... + .......+.+.+.++...+++....+.-+.+.+.+.++ .+.+....+.+.+.+++++.+
T Consensus 300 vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~-~ive~~~~l~egie~i~~i~i 378 (491)
T KOG1383|consen 300 VLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQ-NIVETARKLREGIENIKGIKI 378 (491)
T ss_pred EEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHhhhcccccee
Confidence 88865543322 1 11111112222322222222212111122224444444 466667788888888877666
Q ss_pred CCCCCcccccccccCCCCCCcccccCCch--HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC---ChHHHHHHHHHHH
Q 018172 271 PEYPLEYCNFTGKFTNSHPGFAWLESKED--EDCEKLLRAERIMARGGRRFGADAKYARVSMLS---REEIFNIFLERLS 345 (360)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~---~~e~~~~~~~~l~ 345 (360)
...+.. .|+..+-..- -.+.+.|++.|=.+ |+..|. ..+-+++.. .++-.++++.-|+
T Consensus 379 ~gkp~v-------------s~~~~~s~~~~i~elsd~l~~~GW~l-nalq~P---~a~Hi~vt~~~~~~~~A~~~v~Di~ 441 (491)
T KOG1383|consen 379 VGKPLV-------------SFILFGSNDVNIFELSDLLRKKGWIL-NALQFP---AAIHICVTRVHAREDVADRFVADIR 441 (491)
T ss_pred cCCCcE-------------EEEEccCCccchhhhhHHHHhcCcCc-cccCCC---CceEEEEEeeeccHHHHHHHHHHHH
Confidence 543211 1223332222 66788888888554 444343 244555533 4555677888888
Q ss_pred HHHhch
Q 018172 346 AIQGGS 351 (360)
Q Consensus 346 ~~~~~~ 351 (360)
+++.+-
T Consensus 442 ~~~~el 447 (491)
T KOG1383|consen 442 KVVEEL 447 (491)
T ss_pred HHHHHH
Confidence 887653
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00053 Score=61.64 Aligned_cols=298 Identities=14% Similarity=0.092 Sum_probs=179.2
Q ss_pred ccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCC-ceEEEeCCCCC-CcHHHH
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEP-ISVVSAAPYYS-QYPAET 104 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~-~~vl~~~p~~~-~~~~~~ 104 (360)
|+.+.++ -.|++++.+.+|- ..++.|.-+..+-++++..+.++++.++ .+...+...|. -...-.
T Consensus 75 Yagsrs~-----~~L~~avkdifGf--------q~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~ 141 (471)
T COG3033 75 YAGSRSY-----YALADAVKDIFGF--------QYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHI 141 (471)
T ss_pred hcccccH-----HHHHHHHHHhcCc--------eeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHH
Confidence 6666777 9999999999984 3678887778888888888887776653 22344444444 444556
Q ss_pred HHhCCeeeeecCCcc-----------cccc-----------CCCeeEEEEcCCCC-CCcccch----HHHHHHhhhcCcE
Q 018172 105 DYLRSGLYKWDGDAN-----------TFDK-----------NNGAYIEVVNSPNN-PDGTIRE----AVLAKVNRSAEGK 157 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~-----------~~~~-----------~~~~~~i~~~~p~N-PtG~~~~----~~~~~~~~~~~~~ 157 (360)
+..|+.++.+..+.. .++. .++...|+++--|| --|...| +...++|+++++.
T Consensus 142 ~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ip 221 (471)
T COG3033 142 QINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIP 221 (471)
T ss_pred HhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCc
Confidence 667888877664411 1111 13455565555555 4566666 5778899999999
Q ss_pred EEEeecccC----------CCCCcCC-------CCCCccEEEeccccccCCCCceEEEEeecCHH---HHHHHHHHH---
Q 018172 158 LIHDLAYYW----------PQYTPIT-------GAADHDIMLFTLSKCTGHAGSRIGWALVKDTE---VARKMTRFI--- 214 (360)
Q Consensus 158 li~D~ay~~----------~~~~~~~-------~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~---~~~~l~~~~--- 214 (360)
++.|.+-.. +.+..-. .....+-++.|.-|- ++..+ .|++...|+. +...++...
T Consensus 222 vv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD-~lvnm-GGfl~~~D~~~fDvy~~~~~~~V~~ 299 (471)
T COG3033 222 VVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKD-GLVNM-GGFLCFKDDSFFDVYEECRTLVVVQ 299 (471)
T ss_pred EEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeecccc-ceecc-ccEEEecCccHHHHHHHHHhheEee
Confidence 999986441 1111110 012345567777773 22221 1677776664 444444322
Q ss_pred --hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcc
Q 018172 215 --ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFA 292 (360)
Q Consensus 215 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (360)
..+..+.+.-...+++..|..-.+. .|+.....+ .++|.+.|.+. ++.+..|.|+...|.+.- =+
T Consensus 300 eG~~tYGgl~GrdmealAvGL~e~~~~--~yl~~Rv~Q----v~YL~~~l~~~-GVpi~~paGGHavfvda~------~~ 366 (471)
T COG3033 300 EGFPTYGGLAGRDMEALAVGLREGVNF--DYLAHRVAQ----VQYLADGLEEA-GVPIVQPAGGHAVFVDAG------KF 366 (471)
T ss_pred ccccccCcccchhHHHHHHHHHHhcCc--HHHHHHHHH----HHHHHHHHHhc-CCeeEecCCCceEEeehh------hh
Confidence 1122234555555666655532222 444443333 46778888888 566778888876665321 12
Q ss_pred cccCCch-----HHHHHHHHhhCeeeeCCCCC--CCC----------CCeEEEEecC---ChHHHHHHHHHHHHHHhchh
Q 018172 293 WLESKED-----EDCEKLLRAERIMARGGRRF--GAD----------AKYARVSMLS---REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 293 ~~~~~~~-----~~~~~~l~~~gI~~~pg~~f--~~~----------~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~~ 352 (360)
+...|.. ....++-++.||-..--..| +.+ ..-+|+.+-. +.+-+|-.+++++++.+...
T Consensus 367 lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~~ 446 (471)
T COG3033 367 LPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENAE 446 (471)
T ss_pred cCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhccc
Confidence 2344432 66778888889986543223 211 2469999844 78999999999999987653
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0012 Score=60.90 Aligned_cols=262 Identities=16% Similarity=0.120 Sum_probs=152.3
Q ss_pred cEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeeeecCCc-ccccc--CCCeeEEEEc
Q 018172 61 HIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYKWDGDA-NTFDK--NNGAYIEVVN 133 (360)
Q Consensus 61 ~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~-~~~~~--~~~~~~i~~~ 133 (360)
|--+--++|.+-..+..+..-.+.. ..+++++.-+|+.+...++. +|.+++..+.+. +.++. +.++.++++.
T Consensus 139 NASm~DeaTAaAEAm~ma~r~~k~k-~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~~~~~~~~~gv~vQ 217 (450)
T COG0403 139 NASMLDEATAAAEAMLMAKRVTKKK-RNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDLESADDGDVFGVLVQ 217 (450)
T ss_pred cchhhhhHHHHHHHHHHHHHhhcCc-CceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhhhhhccccCeEEEEEe
Confidence 3344556677767766665432211 12499999999999988776 367777766541 12222 4578899999
Q ss_pred CCCCCCcccch--HHHHHHhhhcCcEEEEee-cccCCCCCcCCCCCCccEEEeccccccCC----CCceEEEEeecCHHH
Q 018172 134 SPNNPDGTIRE--AVLAKVNRSAEGKLIHDL-AYYWPQYTPITGAADHDIMLFTLSKCTGH----AGSRIGWALVKDTEV 206 (360)
Q Consensus 134 ~p~NPtG~~~~--~~~~~~~~~~~~~li~D~-ay~~~~~~~~~~~~~~~i~~~S~sK~~~~----~G~r~G~~~~~~~~~ 206 (360)
+|+ -.|...+ ..+.+.+++++.++++=. --+ -.+..-++..+.+|+++|..- ||+ .|=..||..+ ..++
T Consensus 218 yP~-~~G~~~~d~~~l~~~~h~~~al~~v~aDpla-L~LL~pPGe~GADIvvG~~Qr-fGvPmgfGGPhag~fA~-~~~~ 293 (450)
T COG0403 218 YPN-TFGIVEEDLRALIEAAHSAGALVIVAADPLA-LGLLKPPGEFGADIVVGSAQR-FGVPMGFGGPHAGYFAV-KDEF 293 (450)
T ss_pred cCC-CCCccchhHHHHHHHHhhcCCEEEEEechhH-hhccCCccccCCceEEecCcc-cCCCcCCCCcceeeeeE-hHhH
Confidence 997 5885544 455566666777766422 111 133444578889999998776 443 2344778777 5555
Q ss_pred HHHH----------------------------HHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 207 ARKM----------------------------TRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 207 ~~~l----------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
.+.+ ++.+.....|.|.--...++.+.....+. .-+.++..+.-+...++
T Consensus 294 ~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp--~GLk~iA~r~~~~a~~l 371 (450)
T COG0403 294 KRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGP--QGLKEIAERIHRLAAYL 371 (450)
T ss_pred hhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHH
Confidence 4332 33333233333322222222222222233 88889999999999999
Q ss_pred HHHHHhcC-CcccCCCCCcccccccccCCCCCCcccccCCc-h-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC--C
Q 018172 259 RQVIRQSG-VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-D-EDCEKLLRAERIMARGGRRFGADAKYARVSMLS--R 333 (360)
Q Consensus 259 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~--~ 333 (360)
.+.|++.+ ++.+... .+ |. -+.++++. . +.+.+.....|+.++. + ++..+=+++.- +
T Consensus 372 a~~L~~~~~g~~~~~~--~f--Fd---------t~~v~~~~~~~~~l~~~~~~~G~~L~~---~--~~~~~~ia~tEt~t 433 (450)
T COG0403 372 AAGLKEIGAGVELVFD--HF--FD---------TFTVRVPEEVAEALLAAAIAGGINLRR---V--DADTVLIALTETTT 433 (450)
T ss_pred HHHHhhcCCceEeccc--cc--ee---------eEEEecchhHHHHHHHHHHhcCCceee---e--cCCceEEEeecccC
Confidence 99999764 2332211 11 10 14455552 2 4455555566776654 2 23345555533 6
Q ss_pred hHHHHHHHHHHHHH
Q 018172 334 EEIFNIFLERLSAI 347 (360)
Q Consensus 334 ~e~~~~~~~~l~~~ 347 (360)
+++++.+++++...
T Consensus 434 ~~~i~~l~~~~~~~ 447 (450)
T COG0403 434 KEDIDALVAAFGGV 447 (450)
T ss_pred HHHHHHHHHHHhhh
Confidence 89998888887654
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00023 Score=64.25 Aligned_cols=280 Identities=13% Similarity=0.095 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEc-CChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH-HHHHHhCCe--eeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIG-TGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP-AETDYLRSG--LYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t-~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~-~~~~~~g~~--~~~~ 114 (360)
.+.++.++++++. | ...+|++. .|+|....++...|+..... -.+..-.|.... .-++..+-. +...
T Consensus 53 ~~a~~~lreLl~i---P--d~Y~VlflqGGat~qf~~~p~nLl~~~~~----~yv~~g~Ws~~a~~eA~~~~~~~~~~~~ 123 (365)
T COG1932 53 EEAEKDLRELLNI---P--DDYKVLFLQGGATGQFAMAPMNLLGKRGT----DYVDTGAWSEFAIKEAKKVGKQPKLIDA 123 (365)
T ss_pred HHHHHHHHHHhCC---C--CCceEEEEcCccHHHHHHHHHhhhcccCc----eeEeeeehhHhHHHHHHHhccccccccc
Confidence 4555555666665 2 23467766 67788888888888865432 133334444332 223333422 1111
Q ss_pred cCCcccc---------ccCCCeeEEEEcCCCC-CCcccchHHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEec
Q 018172 115 DGDANTF---------DKNNGAYIEVVNSPNN-PDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFT 184 (360)
Q Consensus 115 ~~~~~~~---------~~~~~~~~i~~~~p~N-PtG~~~~~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S 184 (360)
....+++ +.+.+ .+.+.-++|+ -+|+-+++ ...+.. +.++|+|..-.-.. --.+...-+++-.|
T Consensus 124 ~~~~~~~~~iP~~~~~~~~~~-~ayv~~~~NeTi~Gv~v~~-~p~~~~--~~~~v~D~SS~ils--r~iDvsk~dviyag 197 (365)
T COG1932 124 RIEEAGYGSIPDLSKWDFSDN-DAYVHFCWNETISGVEVPE-LPDIGS--DGLLVADASSAILS--RPIDVSKYDVIYAG 197 (365)
T ss_pred ceeccCccCCCChhhcccCCC-ccEEEEecCCcccceEccC-CCCCCC--CceEEEecccHHhc--CCCChhHcceEEEe
Confidence 1111111 11222 3223333444 47777762 111122 38888997633111 11133344677889
Q ss_pred cccccCCCCceEEEEeecCHHHHHHHHHHH------------hhcccc-CChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 185 LSKCTGHAGSRIGWALVKDTEVARKMTRFI------------ELGSIG-VSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 185 ~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~------------~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
.-|.+|..| ++.++. .++++++++... ...+++ ++.++-+.+...++.+..+ .-++.+.++-
T Consensus 198 aQKnlGpaG--ltvvIv-r~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~--GGl~~~~~rn 272 (365)
T COG1932 198 AQKNLGPAG--LTVVIV-RPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQ--GGLEALEARN 272 (365)
T ss_pred hhhccCccc--eEEEEE-cHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 999999888 787887 788888875531 112233 4445555555577766665 8889999999
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEE
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARV 328 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~ 328 (360)
+++.+.|++.+.+.++..-.... ..++..+ +.+.+.+. ..+...++++|+...-|+. ..+.+|.
T Consensus 273 ~~ka~~LY~~id~s~fy~~~v~~---------~~RS~mn-V~f~~~~~~ld~~fv~eae~~gl~~lkGhr---~vgGmRa 339 (365)
T COG1932 273 QAKAQLLYDWIDKSDFYRNLVAK---------ANRSRMN-VTFTLVDAELDKGFVAEAEAAGLIYLKGHR---SVGGLRA 339 (365)
T ss_pred HHHHHHHHHHHHhCCccccccch---------hhcccee-EEEEcCcHHHHHHHHHHHHHcCCceecccc---CCCceee
Confidence 99999999999888654432211 1122222 34444443 4456666677777666632 2445999
Q ss_pred EecC--ChHHHHHHHHHHHHHHhch
Q 018172 329 SMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 329 s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
|+.. +.|+++.+++-++.+.++.
T Consensus 340 siynA~~~e~veaL~~fm~~f~~~~ 364 (365)
T COG1932 340 SIYNAVPLEDVEALTDFMDWFEETY 364 (365)
T ss_pred eeecCCCHHHHHHHHHHHHHHHHhh
Confidence 9966 8899999999998887653
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00044 Score=63.69 Aligned_cols=292 Identities=14% Similarity=0.049 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEc-CChHHHHHH---HHHhh-cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIG-TGSTQLYQA---ALYAL-SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYK 113 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t-~G~t~~l~~---~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~ 113 (360)
.++-..+.+|+.... --|.|.+- +.++++=+. ++... ...|+..+..+|+|+-.|.-....+.+.|.+++.
T Consensus 108 l~li~~Lq~~L~~IT----G~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~ 183 (496)
T COG1003 108 LELIYELQEWLKEIT----GMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVV 183 (496)
T ss_pred HHHHHHHHHHHHHhc----CCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEE
Confidence 666667777765321 12334433 223333222 23333 3445544556999999999999999999999999
Q ss_pred ecCCcccccc--------CCCeeEEEEcCCCCCCcccch--HHHHHHhhhcCcEEEEeecccCCC-CCcCCCCCCccEEE
Q 018172 114 WDGDANTFDK--------NNGAYIEVVNSPNNPDGTIRE--AVLAKVNRSAEGKLIHDLAYYWPQ-YTPITGAADHDIML 182 (360)
Q Consensus 114 ~~~~~~~~~~--------~~~~~~i~~~~p~NPtG~~~~--~~~~~~~~~~~~~li~D~ay~~~~-~~~~~~~~~~~i~~ 182 (360)
++.+.+|... ++++.++.+++|| -.|+.-. .++.++-.++|..+..|-|-.... -..-++..+.+++=
T Consensus 184 V~~~~~G~VDlddLk~k~~~~~AalMiTnPs-T~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~H 262 (496)
T COG1003 184 VKCDENGNVDLDDLRAKAEDNLAALMITNPS-TLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDVVH 262 (496)
T ss_pred EecCCCCCccHHHHHHHhccceeEEEeccCc-ccccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccceEE
Confidence 9987665432 4788899999997 3566543 344444445999999999844211 12234567778888
Q ss_pred eccccccCCCCce----EEEEeecCHHHHHHHHH----HH--h-------------hccccCChHHHHHHHHHhcccCCC
Q 018172 183 FTLSKCTGHAGSR----IGWALVKDTEVARKMTR----FI--E-------------LGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 183 ~S~sK~~~~~G~r----~G~~~~~~~~~~~~l~~----~~--~-------------~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
.-++|+|..|.=. .|=|.. ...++..|-. .. . ....-.|......+...+..+ +.
T Consensus 263 lNLHKTF~iPHGGGGPG~GPvgV-k~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~m-G~ 340 (496)
T COG1003 263 LNLHKTFCIPHGGGGPGAGPVGV-KAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMM-GA 340 (496)
T ss_pred eecccccccCCCCCCCCCCceeh-HhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHHH-hH
Confidence 8999999765311 222332 2333333321 00 0 000012223333333333322 21
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccC-CCCC-cccccccccCCCCCCccccc-CCc-----hHHHHHHHHhhCe
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLP-EYPL-EYCNFTGKFTNSHPGFAWLE-SKE-----DEDCEKLLRAERI 311 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~l~~~gI 311 (360)
+-+.+.-+.---+..++.++|+.. +.++ .+.. ....+ .+..+ +.. ..++.++|...|+
T Consensus 341 --~GL~~ase~AvLNANYia~rL~~~--y~~~y~~~~~~~HE~----------ild~r~l~~~~Gv~~~DvAKrLlD~Gf 406 (496)
T COG1003 341 --DGLKQASEVAVLNANYIARRLKGY--YPVPYTGENRVAHEC----------ILDARPLKKETGVRALDVAKRLLDYGF 406 (496)
T ss_pred --HHHHHHHHHHHHhHHHHHHHhhhc--CccccCCCCcceeEE----------EeechHhHhhcCCcHHHHHHHHHhcCC
Confidence 555666666566677888888865 1121 1110 11111 11222 111 1888999999999
Q ss_pred eeeCCCCCCC-CCCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 312 MARGGRRFGA-DAKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 312 ~~~pg~~f~~-~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
.. |-.+|.. -.+.+-+=.+- +++++|++++++.++.++..
T Consensus 407 Ha-PT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~ 449 (496)
T COG1003 407 HA-PTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEAD 449 (496)
T ss_pred CC-CcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 85 4345542 35566664433 77999999999999997754
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00055 Score=62.95 Aligned_cols=279 Identities=10% Similarity=-0.016 Sum_probs=144.6
Q ss_pred HHHhhcCCCCCCCCcEEEcCChHH-HHHHHHHhhc--CCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC--cccc
Q 018172 47 NLHHVVDNAVSDGRHIVIGTGSTQ-LYQAALYALS--SPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD--ANTF 121 (360)
Q Consensus 47 ~~~~~~~~~~~~~~~i~~t~G~t~-~l~~~~~~l~--~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~--~~~~ 121 (360)
+++..-|..-. ...++++.+|. .+.+++.++. ..++. |+.+.-.+..-.-++...|.+++.++.. .+.+
T Consensus 64 d~~~~~G~~~~--~~~~~vP~atgm~l~l~l~~l~~r~~a~~----Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l 137 (389)
T PF05889_consen 64 DALRLAGLRSV--KSCFVVPMATGMSLTLCLLALRMRPKAKY----VIWPRIDQKSCFKAIERAGLEPVVVENVLEGDEL 137 (389)
T ss_dssp HHHHHTTHTTH--CEEEEESS-HHHHHHHHHHHHHHHCT--E----EEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEE
T ss_pred HHHHHcCCccc--cceEEEecccccHHHHHHHHHhcccCCce----EEEeeccccchHHHHHhcCCeEEEeeccCCCCee
Confidence 45555455422 23555544333 2333444443 33555 8888877777777788889999887732 1112
Q ss_pred cc------------CCCeeEEEEcCCCCCCcccch--HHHHHHhhhcCcEEEEeecccCCCCCc---C--C-CCCCccEE
Q 018172 122 DK------------NNGAYIEVVNSPNNPDGTIRE--AVLAKVNRSAEGKLIHDLAYYWPQYTP---I--T-GAADHDIM 181 (360)
Q Consensus 122 ~~------------~~~~~~i~~~~p~NPtG~~~~--~~~~~~~~~~~~~li~D~ay~~~~~~~---~--~-~~~~~~i~ 181 (360)
.. .++..+.++++++--.+...+ +++.++|+++|+..|+-.||+-..... + . ....-+.+
T Consensus 138 ~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~ 217 (389)
T PF05889_consen 138 ITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAF 217 (389)
T ss_dssp EEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEE
T ss_pred eccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCccee
Confidence 11 235567777777655555555 467889999999999999998421100 0 0 12334678
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHH
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQV 261 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (360)
+.|..|.|- -+..-+-+.+.++..+..+........+.. +.......++..-. ..+........+...++.+.
T Consensus 218 vqS~dkNF~-VPvGgai~As~~~~~i~~vs~~YpGRas~s--p~ld~~itLl~LG~----~g~~~ll~~r~~~f~~l~er 290 (389)
T PF05889_consen 218 VQSTDKNFM-VPVGGAIMASFDPSGILAVSKEYPGRASAS--PSLDLFITLLSLGC----TGYGALLKERKASFPYLKER 290 (389)
T ss_dssp EEEHHHHHC-EESSHEEEEESSHHHHHHHHHTSHSHBTSH--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCCCEE-ecCCCcEEEecCHHHHHHHHHHhhhhhhcc--cchHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHH
Confidence 999999885 333445566667888888876543333333 22333333332111 22333333333333444444
Q ss_pred HHh----cCCcccCCCCCcccccccccCCCCCCcccccC------CchHHHHHHHHhhCee----eeCCCCCC------C
Q 018172 262 IRQ----SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES------KEDEDCEKLLRAERIM----ARGGRRFG------A 321 (360)
Q Consensus 262 l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gI~----~~pg~~f~------~ 321 (360)
|++ ++......|.... ...+.++. ++..++...|..++|. +.|+..+. .
T Consensus 291 l~~~aee~~e~ll~~p~N~i-----------s~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~y 359 (389)
T PF05889_consen 291 LKKWAEEVGERLLETPRNHI-----------SMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNY 359 (389)
T ss_dssp HHHHHHHTTEEBSSSTT-SS-----------EEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--
T ss_pred HHHHHHHhhhhhcCCCCCCe-----------eEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCC
Confidence 433 3211111121111 00111111 1227888888898875 33332221 1
Q ss_pred CCCeEEEEe--cCChHHHHHHHHHHHHHHh
Q 018172 322 DAKYARVSM--LSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 322 ~~~~~R~s~--~~~~e~~~~~~~~l~~~~~ 349 (360)
...|+-+.- +.++||++.++++|+++++
T Consensus 360 p~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 360 PCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 236777732 3399999999999999874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00084 Score=61.66 Aligned_cols=295 Identities=14% Similarity=0.102 Sum_probs=165.9
Q ss_pred HHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC--C-----CC--CCCceEEEeCCCCCCcHHHHHHhC---Ceee
Q 018172 45 INNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS--P-----GG--PEPISVVSAAPYYSQYPAETDYLR---SGLY 112 (360)
Q Consensus 45 la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~--~-----gd--~~~~~vl~~~p~~~~~~~~~~~~g---~~~~ 112 (360)
+++.....|.+.. .|.|+.-.|+.+.++.+..+=.+ | |- -.+-...+++-+|-++...+..+| ..++
T Consensus 147 l~km~~ivGw~~~-~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~ 225 (510)
T KOG0629|consen 147 LAKMREIVGWEEG-GDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHCI 225 (510)
T ss_pred HHHHHHHhCCCCC-CCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCceeE
Confidence 3444444455444 35566666666665554433211 1 11 111124566788999999999998 6778
Q ss_pred eecCCcccccc-C----------CC---eeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcC-----
Q 018172 113 KWDGDANTFDK-N----------NG---AYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPI----- 172 (360)
Q Consensus 113 ~~~~~~~~~~~-~----------~~---~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~----- 172 (360)
.++.+..|-.. + .+ +-.|..+.-+---|..-+ ..+..+|++|+.|+.+|.|++++-..+.
T Consensus 226 ~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~k 305 (510)
T KOG0629|consen 226 KVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHK 305 (510)
T ss_pred EecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHhh
Confidence 88877554221 1 11 223332222334444444 5677889999999999999987433332
Q ss_pred -CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccc-----------cCChHHHHH-------HHHHh
Q 018172 173 -TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI-----------GVSKESQLR-------AAKIL 233 (360)
Q Consensus 173 -~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~-------~~~~l 233 (360)
.+.....=+..+.+|..| ..+.++.++.+.+.+.++........-+ +.....|-. .+-++
T Consensus 306 l~Giera~SvtwnpHK~~g-aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmw 384 (510)
T KOG0629|consen 306 LTGIERANSVTWNPHKLMG-APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMW 384 (510)
T ss_pred ccCccccCceeecHHHhhc-CcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHH
Confidence 223333346778899999 7888888777556666665433211000 112222222 33333
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccc-CC--CCCcccccccccCCCCCCcccccCCch--------HHH
Q 018172 234 GIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGL-PE--YPLEYCNFTGKFTNSHPGFAWLESKED--------EDC 302 (360)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 302 (360)
+. ++ ..-.++..+.+-+..+++.+.|++.++... .. |+=...+|+.....-. -|-.-++. ..+
T Consensus 385 ka--KG-~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR---~~~~~~e~~~rL~kVaPkI 458 (510)
T KOG0629|consen 385 KA--KG-TQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLR---GWQENPERDSRLVKVAPKI 458 (510)
T ss_pred Hh--cc-cccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhc---cCcccchhhhHHHhhCcHH
Confidence 31 22 266788888899999999999999876443 22 2222233331100000 00000010 334
Q ss_pred HHHHHhhCeeeeCCCCCCCCCCeEEEEecC---ChHHHHHHHHHHHHH
Q 018172 303 EKLLRAERIMARGGRRFGADAKYARVSMLS---REEIFNIFLERLSAI 347 (360)
Q Consensus 303 ~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~---~~e~~~~~~~~l~~~ 347 (360)
...+.++|-....-.+.+..++++|+.++. +.++++-+++-|..+
T Consensus 459 K~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerl 506 (510)
T KOG0629|consen 459 KERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERL 506 (510)
T ss_pred HHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHh
Confidence 566667776665434444457799998855 678888888888765
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00039 Score=61.12 Aligned_cols=298 Identities=9% Similarity=0.009 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH----HHHHHhCCeeee-
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP----AETDYLRSGLYK- 113 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~----~~~~~~g~~~~~- 113 (360)
+..-..++...|. .+.+|.+.++-|--++.++.++.+|..+ +-+++++.-.|++-+ +.++..|..+..
T Consensus 114 e~il~l~~~iVGA------~e~EvavmNsLTvNlh~Ll~sFyKPTek-R~KILlE~kaFPSDhYAiesQ~~lhG~~~e~s 186 (465)
T KOG3846|consen 114 EPILPLLAPIVGA------QENEVAVMNSLTVNLHSLLISFYKPTEK-RFKILLEKKAFPSDHYAIESQCKLHGISPENS 186 (465)
T ss_pred hhhhhhhhhhccC------CchhhhhHhhhhhHHHHHHHHhcCCcch-hhhhhhccCCCCchHHHHHhhhhhcCCChHHh
Confidence 3344444555554 5668999999999999999999988764 345888887777654 445555666432
Q ss_pred -ecCCcc----cc---------ccC-CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCC
Q 018172 114 -WDGDAN----TF---------DKN-NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAAD 177 (360)
Q Consensus 114 -~~~~~~----~~---------~~~-~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~ 177 (360)
+.+.+. .+ +.+ +...+|+.+..+.-||..++ ..+-...+.+|.++=.|-||+.+..+-..-.++
T Consensus 187 m~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWg 266 (465)
T KOG3846|consen 187 MIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWG 266 (465)
T ss_pred eEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecC
Confidence 122211 11 112 35667788999999999988 444455556899999999999776666667788
Q ss_pred ccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc------------------------cccCChHHHHHHHHHh
Q 018172 178 HDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG------------------------SIGVSKESQLRAAKIL 233 (360)
Q Consensus 178 ~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~------------------------~~~~~~~~~~~~~~~l 233 (360)
.++..+.--|.+....=.+|.+........+.+.+....+ .++++-+.-.++...|
T Consensus 267 VDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SL 346 (465)
T KOG3846|consen 267 VDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSL 346 (465)
T ss_pred CceEEEeeecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhH
Confidence 8898888888664211123333332222222222222111 1123223333333344
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCCcccccccc-cCCCCCCcccccCCch-HHHHHHHHhhC
Q 018172 234 GIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFG-LPEYPLEYCNFTGK-FTNSHPGFAWLESKED-EDCEKLLRAER 310 (360)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~~~g 310 (360)
+.... .-+++.|++-.-..-++...++..-+.. -..-..-+..++.. .....+.-+.+.+..+ ..+...|.++|
T Consensus 347 e~F~q---~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp~~~vfqeL~krG 423 (465)
T KOG3846|consen 347 ELFAQ---FNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSPTPKVFQELHKRG 423 (465)
T ss_pred HHHHH---hhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCCchHHHHHHHHcC
Confidence 43221 3355555543333333333333221100 00000001111110 0112233445555555 88899999999
Q ss_pred eeeeCCCCCCCCCCeEEEEecC---ChHHHHHHHHHHHHHHhch
Q 018172 311 IMARGGRRFGADAKYARVSMLS---REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 311 I~~~pg~~f~~~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~ 351 (360)
+.+-- - -++.+|+.... +-.++-+++.+|.+++...
T Consensus 424 v~~Dk---R--~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~ 462 (465)
T KOG3846|consen 424 VIGDK---R--RPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKL 462 (465)
T ss_pred eeccc---c--CCCceEeecchhhccHHHHHHHHHHHHHHHHHh
Confidence 97532 1 36789998655 7899999999999988653
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00085 Score=66.35 Aligned_cols=175 Identities=10% Similarity=0.000 Sum_probs=110.0
Q ss_pred eEEEeCCCCCCcHHHHHHhCC---eeeeecCCcc-ccccC-------------CCeeEEEEcCCCCCCcccch-HHHHHH
Q 018172 89 SVVSAAPYYSQYPAETDYLRS---GLYKWDGDAN-TFDKN-------------NGAYIEVVNSPNNPDGTIRE-AVLAKV 150 (360)
Q Consensus 89 ~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~-~~~~~-------------~~~~~i~~~~p~NPtG~~~~-~~~~~~ 150 (360)
+++++.-.|.++..++..+|+ .++.+|.|.+ .++.+ ..+-+|+-+..+-.+|.+=+ +++.++
T Consensus 224 ~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l 303 (608)
T TIGR03811 224 KWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVAL 303 (608)
T ss_pred EEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHH
Confidence 488888889999999999998 5788887644 23221 12345666777778999876 566666
Q ss_pred h---hhcCc--EEEEeecccCCC---CCc-------C----------------------------CCCCCccEEEecccc
Q 018172 151 N---RSAEG--KLIHDLAYYWPQ---YTP-------I----------------------------TGAADHDIMLFTLSK 187 (360)
Q Consensus 151 ~---~~~~~--~li~D~ay~~~~---~~~-------~----------------------------~~~~~~~i~~~S~sK 187 (360)
| +++|+ |+.+|.||++.. +.+ . .+....+=+...+||
T Consensus 304 ~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK 383 (608)
T TIGR03811 304 RNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHK 383 (608)
T ss_pred HHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCccc
Confidence 5 55887 699999999631 111 0 012234456778999
Q ss_pred ccCCCCceEEEEeecCHHHHHHHHHHHhhc--------------cccCChHH--HHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 188 CTGHAGSRIGWALVKDTEVARKMTRFIELG--------------SIGVSKES--QLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 188 ~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
.+. ....+|.++.++.++.+.+.....+. +...+.++ ...+...++.+--+ .+-+.++.++.
T Consensus 384 ~g~-~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G-~~Gyg~~i~~~ 461 (608)
T TIGR03811 384 MGY-IPYSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLN-VTGYGKLIGAS 461 (608)
T ss_pred ccc-cCCCeEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence 665 66778988887877666553211110 11122222 23333344332101 26777888888
Q ss_pred HHHHHHHHHHHHhc
Q 018172 252 SERWNMLRQVIRQS 265 (360)
Q Consensus 252 ~~~~~~l~~~l~~~ 265 (360)
.+..+++.+.|+..
T Consensus 462 i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 462 IEGAHRFYDFLNNL 475 (608)
T ss_pred HHHHHHHHHHHHhc
Confidence 88889999999885
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00077 Score=59.11 Aligned_cols=179 Identities=16% Similarity=0.129 Sum_probs=106.7
Q ss_pred HHhhhcCcEEEEeecccCCCCCcCC----CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHH--HHhhccccCC
Q 018172 149 KVNRSAEGKLIHDLAYYWPQYTPIT----GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTR--FIELGSIGVS 222 (360)
Q Consensus 149 ~~~~~~~~~li~D~ay~~~~~~~~~----~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~--~~~~~~~~~~ 222 (360)
..-+.+|.+.|.||++.+.+...-- ..++-+--+-++.|-.| .|..++.+++ ..++.+.+.. .-.+.+++.|
T Consensus 237 ~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmG-NGhPVa~Vat-tkeIA~Af~atgv~YFNTyGGn 314 (452)
T KOG1403|consen 237 DAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMG-NGHPVAAVAT-TKEIAQAFHATGVEYFNTYGGN 314 (452)
T ss_pred HHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCC-CCCeeeEEec-cHHHHHHhccccceehhccCCC
Confidence 3344589999999998743211110 11222222556779999 9999999998 8999999865 3345788999
Q ss_pred hHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHH-hcCCcccCCCCCcccccccccCCCCCCcccccCC----
Q 018172 223 KESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIR-QSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK---- 297 (360)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 297 (360)
+.+..+..+.++...+ +-+....+++-+..+.+...++ +++.+. -+++.+.|+.+++-
T Consensus 315 PVsCAv~laVm~v~e~---E~Lq~ha~~vG~~L~~lL~~~k~kh~~IG--------------DvRGvGLFiGIdLVkD~~ 377 (452)
T KOG1403|consen 315 PVSCAVGLAVMRVCED---ENLQEHAQQVGEKLEVLLRRLKQKHECIG--------------DVRGVGLFIGIDLVKDRK 377 (452)
T ss_pred chhHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHhhhcccee--------------ccccceEEEeeeeecccc
Confidence 9999999998886554 4444444444444444444443 232111 12345556666652
Q ss_pred ----ch---HHHHHHHHhh-CeeeeCCCCCCCCCCeEEE--EecCChHHHHHHHHHHHHHHh
Q 018172 298 ----ED---EDCEKLLRAE-RIMARGGRRFGADAKYARV--SMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 298 ----~~---~~~~~~l~~~-gI~~~pg~~f~~~~~~~R~--s~~~~~e~~~~~~~~l~~~~~ 349 (360)
+. ..+...|++. +|++.. -|+..+.+.| .++.++|+.++.+..|.+++.
T Consensus 378 tRtP~tk~A~~~v~rlke~y~VLlsa---DGPh~NilKiKPPmCFneena~e~v~~ld~iLT 436 (452)
T KOG1403|consen 378 TRTPDTKEAHWVVNRLKELYRVLLSA---DGPHRNILKIKPPMCFNEENADEFVLGLDEILT 436 (452)
T ss_pred cCCCcHHHHHHHHHHHHHhhhEEEec---CCCCCceeecCCCcccChhhHHHHHHHHHHHHH
Confidence 21 2234455554 687653 2223444554 233477777777777777764
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0039 Score=64.07 Aligned_cols=229 Identities=13% Similarity=0.048 Sum_probs=133.9
Q ss_pred eEEEeCCCCCCcHHHHHH----hCCeeeeecCCccccccCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeec
Q 018172 89 SVVSAAPYYSQYPAETDY----LRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 89 ~vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~a 163 (360)
+|++++-.|+.+..+++. .|++++.- |.+.+ .+.++.++++.+|| -.|.+.+ +.+.++++++|.+++ +.+
T Consensus 170 ~~~v~~~~hP~~~~v~~t~~~~~g~~i~~~--~~~~~-~~~~~~~v~vq~P~-~~G~i~d~~~i~~~~h~~gal~~-~~~ 244 (954)
T PRK12566 170 RFFVDEHCHPQTLSVLRTRAEGFGFELVVD--AVDNL-AAHAVFGALLQYPD-THGEIRDLRPLIDQLHGQQALAC-VAA 244 (954)
T ss_pred EEEECCCCCHHHHHHHHHhhhcCCcEEEEc--chhhc-CCCCEEEEEEECCC-CceEEccHHHHHHHHHHcCCEEE-EEe
Confidence 499999999888776554 47776652 22222 23468889999997 5898866 556566666788755 332
Q ss_pred cc-CCCCCcCCCCCCccEEEeccccccCC----CCceEEEEeecCHHHHHHH----------------------------
Q 018172 164 YY-WPQYTPITGAADHDIMLFTLSKCTGH----AGSRIGWALVKDTEVARKM---------------------------- 210 (360)
Q Consensus 164 y~-~~~~~~~~~~~~~~i~~~S~sK~~~~----~G~r~G~~~~~~~~~~~~l---------------------------- 210 (360)
-- .-....-++..+.+|++++.. .||. .|=-.||+.+ ..++.+.+
T Consensus 245 d~laL~ll~~Pge~GADI~vG~~Q-~fGvp~~~GGP~ag~~a~-~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHI 322 (954)
T PRK12566 245 DLLSLLVLTPPGELGADVVLGSTQ-RFGVPMGYGGPHAAYFAC-RDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHI 322 (954)
T ss_pred CHHHHhCCCChhhcCCcEEeeCCC-cCCCCCCCCCCCeeeeee-hHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHh
Confidence 10 012223347888898877432 2332 2223678877 56665544
Q ss_pred HHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCC
Q 018172 211 TRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPG 290 (360)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (360)
++.+.....|++.--...++.+.....+. +-+.++.++...+..++.+.|.+. ++.+... .+ |.
T Consensus 323 RReKAtSNICT~qaL~A~~a~~Y~~~~Gp--~Gl~~ia~~~~~~a~~l~~~l~~~-g~~~~~~--~f--F~--------- 386 (954)
T PRK12566 323 RREKANSNICTAQVLLANIAGFYAVYHGP--EGLKRIAQRVHRLTAILAAGLEAK-GIKRLNR--HF--FD--------- 386 (954)
T ss_pred hhccccchhhHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHHHhc-CCccccC--Cc--cc---------
Confidence 22222222222221111111111111232 668888888888999999999885 4554321 11 00
Q ss_pred cccccCC-chHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC--ChHHHHHHHHHHH
Q 018172 291 FAWLESK-EDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS--REEIFNIFLERLS 345 (360)
Q Consensus 291 ~~~~~~~-~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~ 345 (360)
-+.+++. +.+.+.+...+.||-++- . +++.+.+|+.- +.++++.+++.+.
T Consensus 387 ~~~v~~~~~~~~~~~~a~~~~~n~r~---~--~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 387 TLTLEVGGAQAAIIESAEAARINLRI---L--GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred eEEEEccCCHHHHHHHHHHCCCeeEE---e--CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 1334443 236666777788998874 2 35578888844 7899999988884
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0047 Score=55.81 Aligned_cols=256 Identities=14% Similarity=0.084 Sum_probs=145.2
Q ss_pred ChHHHHHHHHHhhcCCCCCCCceEEEeC---CCCCCcHHHHHHhCCeee---------eecCCc-------ccccc---C
Q 018172 67 GSTQLYQAALYALSSPGGPEPISVVSAA---PYYSQYPAETDYLRSGLY---------KWDGDA-------NTFDK---N 124 (360)
Q Consensus 67 G~t~~l~~~~~~l~~~gd~~~~~vl~~~---p~~~~~~~~~~~~g~~~~---------~~~~~~-------~~~~~---~ 124 (360)
+++.++..+..++++|+++ +.--+ -.|...--... +-++. +..+|+ +.++. +
T Consensus 114 SGSPANfavYtall~Ph~R----iMGLDLP~GGHLsHGy~T~--~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~ 187 (477)
T KOG2467|consen 114 SGSPANFAVYTALLKPHER----IMGLDLPSGGHLSHGYQTP--TKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATL 187 (477)
T ss_pred CCCchhhHHHhhhcCCCCe----eeeccCCCCCccccccccC--CceeeeeeeecccCceeeCCCCCceehHHHHHHHHh
Confidence 4477778999999999987 66433 33322211111 11111 111222 22222 2
Q ss_pred CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC--CCcCCC-CCCccEEEeccccccCCCCceEEEEe
Q 018172 125 NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ--YTPITG-AADHDIMLFTLSKCTGHAGSRIGWAL 200 (360)
Q Consensus 125 ~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~--~~~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~ 200 (360)
-++|+|+...-..+- .++ +.++++|.+-|.+++.|-+|.-+- ...+++ -..++|+..+.+|++ .|=|.|.|-
T Consensus 188 frPk~iiaG~SaY~R--~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsL--RGPRg~mIF 263 (477)
T KOG2467|consen 188 FRPKLIIAGTSAYSR--LIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSL--RGPRGAMIF 263 (477)
T ss_pred cCCcEEEeccccchh--hccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccccc--cCCcceeEE
Confidence 477888754322110 011 467789999999999999987310 011111 234688999999986 577777665
Q ss_pred ecC--------------HHHHHHHHHHHhhcc-ccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 018172 201 VKD--------------TEVARKMTRFIELGS-IGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS 265 (360)
Q Consensus 201 ~~~--------------~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (360)
-.. -++-+.+.......- .++.-....+++.+|+.... ..+...++++..+...+.+.|.+.
T Consensus 264 yRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~t---pefk~Yq~qV~~Nakala~~l~~~ 340 (477)
T KOG2467|consen 264 YRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMT---PEFKEYQKQVLKNAKALASALISR 340 (477)
T ss_pred EeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 421 123333332221111 12333333344445664433 667777777888888899999888
Q ss_pred CCcccCCCCCcccccccccCCCCCC-cccccCCc----hHHHHHHHHhhCeeeeCCCCCC----CCCCeEEEEe---cC-
Q 018172 266 GVFGLPEYPLEYCNFTGKFTNSHPG-FAWLESKE----DEDCEKLLRAERIMARGGRRFG----ADAKYARVSM---LS- 332 (360)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~l~~~gI~~~pg~~f~----~~~~~~R~s~---~~- 332 (360)
+...+.. +.-| .+.+++.. +..+++.|..-+|.+.--..+| ..++.+|+.- +.
T Consensus 341 Gy~lvtg--------------GTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsR 406 (477)
T KOG2467|consen 341 GYKLVTG--------------GTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSR 406 (477)
T ss_pred CceEecC--------------CccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhccc
Confidence 5322211 1112 35566543 2778888888888865433343 3578899963 22
Q ss_pred --ChHHHHHHHHHHHHHHh
Q 018172 333 --REEIFNIFLERLSAIQG 349 (360)
Q Consensus 333 --~~e~~~~~~~~l~~~~~ 349 (360)
.++|+++..+-|.+.+.
T Consensus 407 G~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 407 GFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred CccHHHHHHHHHHHHHHHH
Confidence 67888888888777764
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0015 Score=57.38 Aligned_cols=156 Identities=14% Similarity=0.119 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEE---EcCChHHHHHHHHHhhcCCCCCCCceEEEe-CCCCCCcHHH----------H
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIV---IGTGSTQLYQAALYALSSPGGPEPISVVSA-APYYSQYPAE----------T 104 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~---~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~-~p~~~~~~~~----------~ 104 (360)
..|.+..|+-++. +..++ +.+ +|+++..++..+++|||+ .+.. ---|.-.+.+ +
T Consensus 68 dtLe~vyA~vf~a-------E~a~VRpq~is-GTHAI~~aLfg~LRpgDe----ll~i~G~PYDTLeevIG~rg~~~gSL 135 (416)
T COG4100 68 DTLERVYAQVFGA-------EAALVRPQIIS-GTHAIACALFGILRPGDE----LLYITGSPYDTLEEVIGLRGEGQGSL 135 (416)
T ss_pred hHHHHHHHHHhcc-------ccceeeeeeec-chhHHHHHHHhccCCCCe----EEEecCCcchhHHHHhccCCCCcccH
Confidence 7788888888874 22222 445 489999999999999998 5543 2334444444 3
Q ss_pred HHhCCeeeeecCCcccc-c-----c--CCCeeEEEEcCCCCCCcccc------h--HHH-HHHhh-hcCcEEEEeecccC
Q 018172 105 DYLRSGLYKWDGDANTF-D-----K--NNGAYIEVVNSPNNPDGTIR------E--AVL-AKVNR-SAEGKLIHDLAYYW 166 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~~~-~-----~--~~~~~~i~~~~p~NPtG~~~------~--~~~-~~~~~-~~~~~li~D~ay~~ 166 (360)
+..|...+.+++..++- + . +++||+|-+.-. +|+.+ . +++ ..+.+ ..++++.+|++|++
T Consensus 136 ~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~~~tkli~IQRS---~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGE 212 (416)
T COG4100 136 KDFGIKYKAVPLTADGKIDIQAVKTAISDRTKLIGIQRS---KGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGE 212 (416)
T ss_pred HHhCcceeecccccCCcccHHHHHHhcCccceEEEEEec---cCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchh
Confidence 33455555666553322 1 1 578999977542 33332 2 222 22332 27889999999996
Q ss_pred CCCCcCCCCCCccEEEeccccccCCCCc-e-EEEEeecCHHHHHHHH
Q 018172 167 PQYTPITGAADHDIMLFTLSKCTGHAGS-R-IGWALVKDTEVARKMT 211 (360)
Q Consensus 167 ~~~~~~~~~~~~~i~~~S~sK~~~~~G~-r-~G~~~~~~~~~~~~l~ 211 (360)
.--..-+..-+.++..+|+-|.-| .|+ . .||+.+ ..+++++..
T Consensus 213 FvE~~EPt~vGaDliAGSLIKNpG-GgiaktGGYiaG-k~~~ve~~~ 257 (416)
T COG4100 213 FVEEKEPTHVGADLIAGSLIKNPG-GGIAKTGGYIAG-KAELVEAAA 257 (416)
T ss_pred hhhccCccccchhhhccceeeCCC-Cceeeccceeec-hHHHHHhhc
Confidence 544445566778899999999765 221 1 267777 788887764
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0026 Score=57.13 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=119.1
Q ss_pred CeeEEEEcCC-CCCCccc-ch----HHHHHHhhhcCcEEEEeecccCCCCCc-CCC--C--CCccEEEeccccccCCCCc
Q 018172 126 GAYIEVVNSP-NNPDGTI-RE----AVLAKVNRSAEGKLIHDLAYYWPQYTP-ITG--A--ADHDIMLFTLSKCTGHAGS 194 (360)
Q Consensus 126 ~~~~i~~~~p-~NPtG~~-~~----~~~~~~~~~~~~~li~D~ay~~~~~~~-~~~--~--~~~~i~~~S~sK~~~~~G~ 194 (360)
.+.+-++.-| +..-|-. .+ ..++.++++|++.+|+||++.+++... +-. . .+.-.-+-+|||-|- +|
T Consensus 270 ~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFSKK~q-~g- 347 (484)
T KOG1405|consen 270 KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQ-TG- 347 (484)
T ss_pred CCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehhhhhh-cC-
Confidence 3555455555 3344433 22 467788999999999999998643322 111 0 111112457888776 66
Q ss_pred eEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q 018172 195 RIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYP 274 (360)
Q Consensus 195 r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 274 (360)
||.. +++++-. ..++.+.++...+.-...+.++++.+.+. ..+++....=......|.+.-+++|+..-
T Consensus 348 --Gffh--~~~frpn-~pYrifNTWmGdP~k~lll~~vv~~I~~~--~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~---- 416 (484)
T KOG1405|consen 348 --GFFH--DEEFRPN-EPYRIFNTWMGDPSKNLLLEEVVQEIKRE--DLLNNVAHVGKALLKGLLELQAKYPGKIN---- 416 (484)
T ss_pred --cccc--CcccCCC-chHHHhhhhcCChHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHhCchhhh----
Confidence 6664 3443322 22333455666666666677777766553 66666665555555555555455543211
Q ss_pred CcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEE--ecCChHHHHHHHHHHHHHHh
Q 018172 275 LEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVS--MLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s--~~~~~e~~~~~~~~l~~~~~ 349 (360)
-.++.+.|+-.+++++ +.+...++-+|+.+-. ++...+||- +.-++.-.+-+++++.+++.
T Consensus 417 ---------~~RGrGTF~a~d~ps~~~Rdk~i~~~~~nGv~~GG-----Cg~~siRfRPsLvf~~~Ha~i~l~~~~k~l~ 482 (484)
T KOG1405|consen 417 ---------NLRGRGTFIAWDCPSGSIRDKLILIARLNGVNLGG-----CGDKSIRFRPSLVFRKHHADIFLDIFDKILA 482 (484)
T ss_pred ---------cccccceEEEEeCCChHHHHHHHHHHHHcCceecc-----cccceeeeccceeehhhhHHHHHHHHHHHhc
Confidence 1235666889999887 6677788888887532 235567774 43377778889999988875
Q ss_pred c
Q 018172 350 G 350 (360)
Q Consensus 350 ~ 350 (360)
.
T Consensus 483 ~ 483 (484)
T KOG1405|consen 483 G 483 (484)
T ss_pred c
Confidence 3
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0085 Score=55.80 Aligned_cols=128 Identities=18% Similarity=0.071 Sum_probs=76.1
Q ss_pred cHHHHHHHHHHHhhc-CCC-------CCCCCcEEEcCChHHHHHHHHHhh------cCCCC---CC-----CceEEEeCC
Q 018172 38 VPELAEAINNLHHVV-DNA-------VSDGRHIVIGTGSTQLYQAALYAL------SSPGG---PE-----PISVVSAAP 95 (360)
Q Consensus 38 ~~~lr~~la~~~~~~-~~~-------~~~~~~i~~t~G~t~~l~~~~~~l------~~~gd---~~-----~~~vl~~~p 95 (360)
+.||+..+.+|++.- +.+ ......|+-++.+-..+-.++.+= .+.+. ++ .-.+..++.
T Consensus 111 ~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDq 190 (511)
T KOG0628|consen 111 CTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQ 190 (511)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCc
Confidence 478888888876532 221 223345666655333333333321 12221 11 125778999
Q ss_pred CCCCcHHHHHHhCCeeeeecCCcc-cccc---------C---CCeeEEEEcCCCCCCccc-ch--HHHHHHhhhcCcEEE
Q 018172 96 YYSQYPAETDYLRSGLYKWDGDAN-TFDK---------N---NGAYIEVVNSPNNPDGTI-RE--AVLAKVNRSAEGKLI 159 (360)
Q Consensus 96 ~~~~~~~~~~~~g~~~~~~~~~~~-~~~~---------~---~~~~~i~~~~p~NPtG~~-~~--~~~~~~~~~~~~~li 159 (360)
.+.+.+..+...|.+.+.++.|.+ ++.. | .-+..+++.+.- -||.. .+ .++..+|+++++|+.
T Consensus 191 ahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~G-TT~~ca~D~l~elg~Vc~~~glWLH 269 (511)
T KOG0628|consen 191 AHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLG-TTSSCAFDELEELGPVCREEGLWLH 269 (511)
T ss_pred ccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeec-CccccccccHHHhcchhhhcCEEEE
Confidence 999999999999999999988753 2222 1 122233333321 23333 22 566778999999999
Q ss_pred EeecccC
Q 018172 160 HDLAYYW 166 (360)
Q Consensus 160 ~D~ay~~ 166 (360)
+|.||++
T Consensus 270 VDAAYAG 276 (511)
T KOG0628|consen 270 VDAAYAG 276 (511)
T ss_pred eehhhcc
Confidence 9999995
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.064 Score=47.05 Aligned_cols=285 Identities=14% Similarity=0.099 Sum_probs=154.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEc-CChHHHHHHHHHhhc--CCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIG-TGSTQLYQAALYALS--SPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKW 114 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t-~G~t~~l~~~~~~l~--~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~ 114 (360)
+.+.+..+.++++.. +...|++. .|+|.-...+..-|. +.|+.... |++-..+-..+..+-+......+.+
T Consensus 54 i~~tes~lreLlniP-----dn~~vlf~QGGGt~qFaAv~lNL~glK~g~~AdY-iVTGsWS~KA~~EAkk~~~~~~V~~ 127 (370)
T KOG2790|consen 54 INDTESLLRELLNIP-----DNYKVLFLQGGGTGQFAAVPLNLIGLKHGRCADY-VVTGSWSAKAAEEAKKYGTPNIVIP 127 (370)
T ss_pred HHHHHHHHHHHHcCC-----CceeEEEEeCCCcccccccchhhhccccCCccce-EEeccccHHHHHHHHhhCCceEEec
Confidence 466667777777752 23456654 666666666666564 45533211 3333222223333333322333333
Q ss_pred cC---------CccccccCCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecc
Q 018172 115 DG---------DANTFDKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTL 185 (360)
Q Consensus 115 ~~---------~~~~~~~~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~ 185 (360)
+. |++.++.+++.+.+++|.-----|+-++..- +-.-++..+|.|-.--+-+.+. +-....++....
T Consensus 128 ~~k~y~ygkvPd~~~w~~~~da~yvyyCaNETVHGVEf~~~P--~~~~~~~vlVaDmSSnflSrpv--Dvsk~gvi~aGA 203 (370)
T KOG2790|consen 128 KLKSYTYGKVPDPSTWELNPDASYVYYCANETVHGVEFDFIP--VNDPKGAVLVADMSSNFLSRPV--DVSKFGVIFAGA 203 (370)
T ss_pred cccccccCcCCChhhcccCCCccEEEEecCceeeceecCCCC--CCCCCCceEEEecccchhcCCc--cchhcceEEecc
Confidence 32 3445555677777777653234566555322 1233788889987532211111 233345667788
Q ss_pred ccccCCCCceEEEEeecCHHHHHHHHHHH-----------hhccc-cCChHHHHHHHHHhcccCCCchhHHHHHHHHHHH
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARKMTRFI-----------ELGSI-GVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-----------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
.|.+|+.|+-+ ++. ..+++....... ...-+ +++..+.+...-.++.+.+. .-++.+...-.+
T Consensus 204 QKN~G~aG~Tv--viv-r~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~--GGl~a~e~~n~~ 278 (370)
T KOG2790|consen 204 QKNVGPAGVTV--VIV-RKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEK--GGLAAMEKLNQE 278 (370)
T ss_pred ccccCccccEE--EEE-ehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhc--ccHHHHHHHHHH
Confidence 99999888543 333 344443322110 11111 24444555555555555444 778888888899
Q ss_pred HHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeCCCCCCCCCCeEEEE
Q 018172 254 RWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARGGRRFGADAKYARVS 329 (360)
Q Consensus 254 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s 329 (360)
+.+.+++.+.+..++.....+. .+++.- -+.+++.++ +++.+..+++=+.+ -|+. .-+.+|-|
T Consensus 279 KskllYd~iD~s~gfy~cpVe~--------~~RS~M-NV~Fri~~d~Le~eFLkeA~~~~mv~L-KGhR---SVGGiRAS 345 (370)
T KOG2790|consen 279 KSKLLYDAIDNSNGFYRCPVEP--------SVRSRM-NVPFRIEKDELEAEFLKEAAKEHMVQL-KGHR---SVGGIRAS 345 (370)
T ss_pred HHHHHHHHHHhcCCeEEcccch--------hhhhhc-ccceeecchHHHHHHHHHHHHhhhhcc-cccc---ccccchhh
Confidence 9999999999885544432221 112222 244555443 55555555443333 2321 24578999
Q ss_pred ecC--ChHHHHHHHHHHHHHHhc
Q 018172 330 MLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 330 ~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
+.. +-|+.++++.-++++.+.
T Consensus 346 lYNAisv~~~q~L~~~m~~F~k~ 368 (370)
T KOG2790|consen 346 LYNAISVEEVQKLAAFMKEFQKK 368 (370)
T ss_pred hhccccHHHHHHHHHHHHHHHHh
Confidence 855 888888888888888754
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.2 Score=43.56 Aligned_cols=196 Identities=13% Similarity=0.083 Sum_probs=100.8
Q ss_pred HHHHHHhhhcCcEEEEeecccCCCCCc---CC---CCCCccEEEeccccccCCCCceEEEEee-cCHHHHHHHHHHHhhc
Q 018172 145 AVLAKVNRSAEGKLIHDLAYYWPQYTP---IT---GAADHDIMLFTLSKCTGHAGSRIGWALV-KDTEVARKMTRFIELG 217 (360)
Q Consensus 145 ~~~~~~~~~~~~~li~D~ay~~~~~~~---~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~-~~~~~~~~l~~~~~~~ 217 (360)
+.+..+|..|++.-|+..+|+-.+-.. +. .-..-+.++.|+.|.|-.|- .|.+++ -...+++.+.+.....
T Consensus 177 eaiaaica~~diphivnnayglqsee~i~~iaa~~~~grida~vqsldknf~vpv--ggaiia~fk~n~iq~iak~ypgr 254 (432)
T KOG3843|consen 177 EAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECGRIDAFVQSLDKNFMVPV--GGAIIAAFKDNFIQEIAKMYPGR 254 (432)
T ss_pred HHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhccHHHHHHHhhhcceeec--chhHhhHhHHHHHHHHHHhCCCc
Confidence 566777888999999999998432111 11 12333568999999997653 244433 3567777777654433
Q ss_pred cccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC
Q 018172 218 SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297 (360)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
....+.. -.....|..-...+.+.+.+..+.....+..+...-..++-..+-.|.... +. -+.+..-
T Consensus 255 asa~ps~--dllitll~~gqn~f~e~~~eqkemf~~l~~ki~~~ae~~~e~l~~~p~n~i---------s~--amtl~ti 321 (432)
T KOG3843|consen 255 ASASPSL--DLLITLLSLGQNAFKELFGEQKEMFLKLRNKIIKFAEAIGECLLETPENEI---------SL--AMTLKTI 321 (432)
T ss_pred cccCccH--HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchh---------hh--hhhhccC
Confidence 3333333 333333332233333444444444444444444444444322222232111 10 1122222
Q ss_pred ch------HHHHHHHHhhCee---eeCCC------------CCCC-----CCCeEEEE--ecCChHHHHHHHHHHHHHHh
Q 018172 298 ED------EDCEKLLRAERIM---ARGGR------------RFGA-----DAKYARVS--MLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 298 ~~------~~~~~~l~~~gI~---~~pg~------------~f~~-----~~~~~R~s--~~~~~e~~~~~~~~l~~~~~ 349 (360)
+. ..+-..|-.+||. ++|.. .|+. ..+|+-.. ++.+..++++++.+|...+.
T Consensus 322 ~~~k~kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~e~~~~yln~a~aigm~~hdld~~~~rl~~~~a 401 (432)
T KOG3843|consen 322 DEAKDKAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTNEQHCAYLNAACAIGMKDHDLDEFFNRLDRCLA 401 (432)
T ss_pred ChHHhhHHHHHHHHHHhccccCceEeeccccceeeeceEEeccccccCcCchhHhhHHHhcCCcHhHHHHHHHHHHHHHH
Confidence 22 3344556666664 44421 1221 12233332 33378899999999998887
Q ss_pred chhccC
Q 018172 350 GSISNG 355 (360)
Q Consensus 350 ~~~~~~ 355 (360)
..+++.
T Consensus 402 ~~~ke~ 407 (432)
T KOG3843|consen 402 AFRKEL 407 (432)
T ss_pred HHHHHH
Confidence 766443
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.41 E-value=4.6 Score=39.98 Aligned_cols=250 Identities=15% Similarity=0.074 Sum_probs=139.2
Q ss_pred CCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCcccccc-----------CCCeeEEEEcCCCCCCcccch---HH
Q 018172 81 SPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFDK-----------NNGAYIEVVNSPNNPDGTIRE---AV 146 (360)
Q Consensus 81 ~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----------~~~~~~i~~~~p~NPtG~~~~---~~ 146 (360)
..|+.-+-.-++|...|.-....+.+.|.+++++..+.++-.. ..+-.++.++.|+ --|+.-+ +.
T Consensus 624 ~kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPS-T~GvfE~~i~d~ 702 (1001)
T KOG2040|consen 624 SKGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPS-THGVFEEGIDDI 702 (1001)
T ss_pred hccCCcceeEEEeecccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEeccc-ccccccccHHHH
Confidence 3344322336788889998999999999999999988664322 2345677888887 3565544 34
Q ss_pred HHHHhhhcCcEEEEeecccCC-CCCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHh----------
Q 018172 147 LAKVNRSAEGKLIHDLAYYWP-QYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIE---------- 215 (360)
Q Consensus 147 ~~~~~~~~~~~li~D~ay~~~-~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~---------- 215 (360)
+..+.+ +|.-+..|.+-... .-..-++..+.+++=-.++|+|.+|.=..|=-.+ +-.+...|..+..
T Consensus 703 cd~iHe-hGGQVYlDGANMNAqVGlc~pGd~GaDV~HLNLHKTFcIPHGGGGPg~g-PIgVK~HLapfLP~HpVvs~~~~ 780 (1001)
T KOG2040|consen 703 CDIIHE-HGGQVYLDGANMNAQVGLCRPGDIGADVCHLNLHKTFCIPHGGGGPGMG-PIGVKKHLAPFLPSHPVVSPGRP 780 (1001)
T ss_pred HHHHHh-cCCEEEecCCCccceecccCCccccccceeecccceeeecCCCCCCCCC-ccchhhhccccCCCCCccCCCCC
Confidence 445555 99999999886531 1233446777888888899999765422222222 3233333322110
Q ss_pred -----hcccc----CChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcc-cccccccC
Q 018172 216 -----LGSIG----VSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEY-CNFTGKFT 285 (360)
Q Consensus 216 -----~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~ 285 (360)
..+.+ .+.......++.++.+ +. ..+....+.-.-+..++.++|..+=.+.+....+.- ..
T Consensus 781 ~~~~~~gsVsaaP~Gsa~ILpISwaYikmM-G~--~GL~~as~~AiLNaNYMakRLe~hYkil~~~~~~~vaHE------ 851 (1001)
T KOG2040|consen 781 EDTSPVGSVSAAPWGSALILPISWAYIKMM-GS--GGLKDASKIAILNANYMAKRLESHYKILFRGENGLVAHE------ 851 (1001)
T ss_pred CCCCCccceeccCCCcceeehhHHHHHHHh-cc--cccchhhHHHhhhhHHHHHHHhhccceeEecCCcceeee------
Confidence 01111 1111122223333322 11 333344444445566777888776223322222210 11
Q ss_pred CCCCCcccccC---C-----chHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 286 NSHPGFAWLES---K-----EDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 286 ~~~~~~~~~~~---~-----~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
| -+++ + +..++.++|..+|.-.... .|.. .+.+-+-.+- +.+++|++.+++-.+-++
T Consensus 852 -----F-IlD~r~fK~~agieavDvAKRL~DYgFHaPTm-swPV-~gtLMIEPTESE~k~ElDRfcdAliSIreE 918 (1001)
T KOG2040|consen 852 -----F-ILDLRPFKKTAGIEAVDVAKRLMDYGFHAPTM-SWPV-AGTLMIEPTESEDKAELDRFCDALISIREE 918 (1001)
T ss_pred -----e-eeechhhccccCCcHHHHHHHHHhccCCCCcc-cccc-CCceEeccCccccHHHHHHHHHHHHHHHHH
Confidence 1 1222 1 1277888999999875333 3432 5566665433 679999999998776543
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.77 E-value=9.8 Score=37.83 Aligned_cols=226 Identities=13% Similarity=0.094 Sum_probs=121.8
Q ss_pred eEEEeCCCCCCcHHHHHH----hCCeeeeecCCcccccc-CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEee
Q 018172 89 SVVSAAPYYSQYPAETDY----LRSGLYKWDGDANTFDK-NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDL 162 (360)
Q Consensus 89 ~vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~~~~~~-~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ 162 (360)
++++...+|+....+++. +|++++.. |...... ..+...+++..|. --|.+.+ .++.+.+++.+.+++.--
T Consensus 207 k~vvd~~~hpqtlsV~~TRa~~~~i~v~~~--~~~~~~~s~~~v~gvlvQYP~-t~G~i~d~~el~~~a~~~~s~vv~at 283 (1001)
T KOG2040|consen 207 KFVVDSNCHPQTLSVVKTRAKGFGIKVVVS--DIKEADYSSKDVSGVLVQYPD-TEGSVLDFDELVELAHANGSLVVMAT 283 (1001)
T ss_pred eEEecCCCCcchhhhhhccccccceeEEec--CHHHhhccccceeEEEEEcCC-CCCcccCHHHHHHHhhccCceEEEee
Confidence 399999999999888765 24443322 3222222 3345567777775 3666766 677777877777766322
Q ss_pred cccCCCCCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHH---HHHHHHHHhhc----------------------
Q 018172 163 AYYWPQYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEV---ARKMTRFIELG---------------------- 217 (360)
Q Consensus 163 ay~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~---~~~l~~~~~~~---------------------- 217 (360)
-.-.-.+.--++..+.+|.++|... ||+| +||= ++...+ .+.+.+.....
T Consensus 284 DLLaLtiLrpPgefGaDIavGSsQR-FGVP---lGYG-GPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTRE 358 (1001)
T KOG2040|consen 284 DLLALTILRPPGEFGADIAVGSSQR-FGVP---LGYG-GPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTRE 358 (1001)
T ss_pred hhhHHHccCChhhcCceeeeccccc-cCcc---ccCC-CchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHH
Confidence 1111122223467788888888765 5543 2431 111111 11111111000
Q ss_pred -------cccCChHHHHHHHHH---hcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCC
Q 018172 218 -------SIGVSKESQLRAAKI---LGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNS 287 (360)
Q Consensus 218 -------~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (360)
.-+.-..+|..++.+ .....+. ..++++.+++-...-+|...|++.+ .++...
T Consensus 359 QHIrRDKATSNICTAQALLANmaAmyaiYHGp--~gL~~IArrvh~~T~~l~~~l~~ag-hel~~k-------------- 421 (1001)
T KOG2040|consen 359 QHIRRDKATSNICTAQALLANMAAMYAIYHGP--HGLKEIARRVHNLTLILAEGLKNAG-HELQHK-------------- 421 (1001)
T ss_pred HHhhhhccchhhhHHHHHHHHHHHHHhhhcCc--HHHHHHHHHHHHHHHHHHHHHhhcc-hhhccc--------------
Confidence 001111233222221 1111122 6777777887777788888888664 222211
Q ss_pred CCCc--ccccCCch-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC--ChHHHHHHHHHHH
Q 018172 288 HPGF--AWLESKED-EDCEKLLRAERIMARGGRRFGADAKYARVSMLS--REEIFNIFLERLS 345 (360)
Q Consensus 288 ~~~~--~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~ 345 (360)
..| +-+++... +++.+...+++|-++- + +++.+-+++-- +++|++.++..+.
T Consensus 422 -~fFDTLkI~~~~s~~~~l~rA~~~~iNlr~---~--ed~tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 422 -PFFDTLKIRCGCSAEEVLDRAAKRQINLRL---V--EDGTIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred -cccceEEEEecCcHHHHHHHHHhhcCceEE---e--ecCceEEeecccccHHHHHHHHHHHc
Confidence 112 44555544 7777777777887663 2 46677788733 7788888887765
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=86.71 E-value=12 Score=40.24 Aligned_cols=195 Identities=9% Similarity=0.038 Sum_probs=116.5
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHhh------cCCCCCCCceEEEeCCCC
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRHIVIGTGSTQLYQAALYAL------SSPGGPEPISVVSAAPYY 97 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~i~~t~G~t~~l~~~~~~l------~~~gd~~~~~vl~~~p~~ 97 (360)
..|.++.|- ..+|..++.|++.+ +++.+++ +|++.++-..++..++..+ ++.+-+ -.+| +.
T Consensus 420 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~- 487 (1082)
T PLN02672 420 FPCEPPAGS-----KRFRNLIAGFMRIYHHIPLTPD-NVVVFPSRAVAIENALRLFSPRLAIVDEHLT----RWLP-KK- 487 (1082)
T ss_pred CCCCCCccc-----hHHHHHHHHHHHHhcCCcCCcc-ceEEeccHHHHHHHHHHhhChHHHhhhhhhh----ccCC-HH-
Confidence 347788887 99999999998754 7777775 8999999999997777654 333332 2222 11
Q ss_pred CCcHHHHHHhC--------Cee--eeecCCcc---ccccCCCeeEEEEcCCCCC-CcccchHHHHHHhhhcCcEEEEeec
Q 018172 98 SQYPAETDYLR--------SGL--YKWDGDAN---TFDKNNGAYIEVVNSPNNP-DGTIREAVLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 98 ~~~~~~~~~~g--------~~~--~~~~~~~~---~~~~~~~~~~i~~~~p~NP-tG~~~~~~~~~~~~~~~~~li~D~a 163 (360)
+...+..-| -.+ +.-|...+ .+...-+++.|+....... +-...-+.+...+++.|.+++.|..
T Consensus 488 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (1082)
T PLN02672 488 --WLTSLAIENATSDSKSDDVITVIEAPRQSDLVIELIKKLKPQVVVTGMADFEMRTSTAFEHLLNVTAEIGARLFLDIS 565 (1082)
T ss_pred --HHhHhhhhcccccCccCCeEEEEeCCCcchHHHHHHHhCCCeEEEEeccchhhhhHHHHHHHHHHHHhhCcEEEEehh
Confidence 222222222 111 11111111 1122456788876655421 1111114455556669999999986
Q ss_pred ccCCCCCcCC------------CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHH
Q 018172 164 YYWPQYTPIT------------GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAK 231 (360)
Q Consensus 164 y~~~~~~~~~------------~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (360)
-.. .+.+++ ....+..++-++-|.-=.+.+.+.+++.-+..+...|.+.........+.+.|..-..
T Consensus 566 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (1082)
T PLN02672 566 DHL-ELSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVISENEAVLKALSKTGEVLEGRTAIISQFYYGC 644 (1082)
T ss_pred hhe-eeccCCCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEEecCcHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 432 111111 2344556667777755458999999998777888888877766666677777765554
Q ss_pred Hhc
Q 018172 232 ILG 234 (360)
Q Consensus 232 ~l~ 234 (360)
.+.
T Consensus 645 ~~~ 647 (1082)
T PLN02672 645 LFH 647 (1082)
T ss_pred HHH
Confidence 443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 360 | ||||
| 3bwn_A | 391 | L-Tryptophan Aminotransferase Length = 391 | 1e-125 | ||
| 3bwn_C | 391 | L-Tryptophan Aminotransferase Length = 391 | 1e-125 | ||
| 1lk9_A | 448 | The Three-Dimensional Structure Of Alliinase From G | 1e-56 | ||
| 2hor_A | 427 | Crystal Structure Of Alliinase From Garlic- Apo For | 1e-56 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 5e-05 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 8e-05 |
| >pdb|3BWN|A Chain A, L-Tryptophan Aminotransferase Length = 391 | Back alignment and structure |
|
| >pdb|3BWN|C Chain C, L-Tryptophan Aminotransferase Length = 391 | Back alignment and structure |
|
| >pdb|1LK9|A Chain A, The Three-Dimensional Structure Of Alliinase From Garlic Length = 448 | Back alignment and structure |
|
| >pdb|2HOR|A Chain A, Crystal Structure Of Alliinase From Garlic- Apo Form Length = 427 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 375 bits (964), Expect = e-129
Identities = 207/352 (58%), Positives = 263/352 (74%), Gaps = 8/352 (2%)
Query: 3 FEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHI 62
+E +WRK+GD+CT+ I G DLMSY SDM N+CWFL PEL +AI +LH VV NA ++ R+I
Sbjct: 35 YEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYI 94
Query: 63 VIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFD 122
V+GTGSTQL QAA++ALSS +P+SVV+AAP+YS Y ET Y+RSG+YKW+GDA FD
Sbjct: 95 VVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWGFD 154
Query: 123 KNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182
K YIE+V SPNNPDGTIRE V+ + + E K+IHD AYYWP YTPIT DHDIML
Sbjct: 155 KKG-PYIELVTSPNNPDGTIRETVVNRPDDD-EAKVIHDFAYYWPHYTPITRRQDHDIML 212
Query: 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY-- 240
FT SK TGHAGSRIGWALVKD EVA+KM +I + SIGVSKESQ+R AKIL ++ +
Sbjct: 213 FTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKS 272
Query: 241 ----PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES 296
NFF+YGR +M RW LR+V+++S F LP+YP +CN+ GK S+P FAWL +
Sbjct: 273 ESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGT 332
Query: 297 KEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQ 348
KE+ D LR ++M+R G R G+D K+ RVSMLSRE++FN+FLERL+ ++
Sbjct: 333 KEETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMK 384
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 343 bits (882), Expect = e-116
Identities = 125/361 (34%), Positives = 190/361 (52%), Gaps = 24/361 (6%)
Query: 3 FEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHI 62
E +W++ + +++S MSY + V F+ EL + I LH VV NA + R+I
Sbjct: 69 LEEYWKQHKEASAVLVSPWHRMSYFFN--PVSNFISFELEKTIKELHEVVGNAAAKDRYI 126
Query: 63 VIGTGSTQLYQAALYALSSPGGPEPIS----VVSAAPYYSQYPAETDYLRSGLYKWDGDA 118
V G G TQL + +LS P + VV+ AP+Y + +T Y Y W G+A
Sbjct: 127 VFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNA 186
Query: 119 NTFDK--NNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAA 176
+ N YIE+V SPNNP+G +R AV+ K I+D+ YYWP YTPI A
Sbjct: 187 ANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIK------GCKSIYDMVYYWPHYTPIKYKA 240
Query: 177 DHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIV 236
D DI+LFT+SK TGH+GSR GWAL+KD V + ++ + G +E+QLR+ K+L V
Sbjct: 241 DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEV 300
Query: 237 SDDYP-------NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPL-EYCNFTGKFTNSH 288
+ +G + + ERW + ++ QS F E P EYCN+ +
Sbjct: 301 VAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPS 360
Query: 289 PGFAWL--ESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSA 346
P +AW+ E +ED+DC + + RI + G F A ++Y R+S++ ++ F+ + L
Sbjct: 361 PSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKD 420
Query: 347 I 347
+
Sbjct: 421 M 421
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 7e-12
Identities = 68/348 (19%), Positives = 111/348 (31%), Gaps = 87/348 (25%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
P ++++ L+ V I+ G+T LY+L PG V+S P Y
Sbjct: 66 PAFKKSVSQLYTGVKPE-----QILQTNGATGANLLVLYSLIEPGD----HVISLYPTYQ 116
Query: 99 QYP-------AETDYLRSGL---YKWDGDA-------NTFDKNNGAYIEVVNSPNNPDGT 141
Q AE D + + D + T K + +N+ NNP G
Sbjct: 117 QLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTT--K-----MICINNANNPTGA 169
Query: 142 I-REAVLAKVNRSAEGK---LIHD-----LAYYWPQYTPITGAADHDIMLFTLSKCTGHA 192
+ L ++ A ++ D + I D I + +LSK
Sbjct: 170 VMDRTYLEELVEIASEVGAYILSDEVYRSFSELDV--PSIIEVYDKGIAVNSLSKTYSLP 227
Query: 193 GSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMS 252
G RIGW + +V + + + I L A L Y E R ++
Sbjct: 228 GIRIGWV-AANHQVTDILRDYRDYTMICAGVFDDLVAQLAL----AHYQEILERNRHILE 282
Query: 253 ERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-------------ED 299
E +L ++ P +++
Sbjct: 283 ENLAILD-----------------------QWIEEEPLVSYIRPAVVSTSFVKIAVDMPM 319
Query: 300 ED-CEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSA 346
ED C +LL+ ++ G RF D Y R+ +E LE+LS
Sbjct: 320 EDFCLQLLQEHGVLLVPGNRFERD-GYVRLGFACEQETLIKGLEKLSQ 366
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 1e-10
Identities = 51/324 (15%), Positives = 107/324 (33%), Gaps = 55/324 (16%)
Query: 40 ELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ 99
L + + + V D I++ G T + A + A P +++
Sbjct: 54 TLRQMLAKRNSV------DNNAILVTNGPTAAFYQIAQAF------RGSRSLIAIPSFAE 101
Query: 100 YP-------AETDYLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTI--REAVLAKV 150
Y E + + + + +PNNPDG + R +L +
Sbjct: 102 YEDACRMYEHEVCFYP------SNEDIGEADFSNMDFCWLCNPNNPDGRLLQRTEILRLL 155
Query: 151 NRSAEGKLIHDLAY--YWPQ-YTPITGAADHD--IMLFTLSKCTGHAGSRIGWALVKDTE 205
N + + D +Y + + +M+++ S G G RIG+ + + +
Sbjct: 156 NDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVA-NKD 214
Query: 206 VARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS 265
+++ F + V+ + A IL F R+ + + + +
Sbjct: 215 FMKRVAAFSTPWA--VNALAIEAAKFIL----IHPAQFTLPIRKWQRNTVDFITAL---N 265
Query: 266 GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRF-GADAK 324
+ G+ +P F F + E + +L ++ R F G D
Sbjct: 266 RLDGVEVHP-SGTTF---FL-----LRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDES 316
Query: 325 YARVSMLSREEIFN-IFLERLSAI 347
Y R++ + N +F++ L
Sbjct: 317 YVRITTQRPAQ--NQLFIKALETF 338
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 2e-10
Identities = 54/331 (16%), Positives = 120/331 (36%), Gaps = 59/331 (17%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
L ++I N + IV+G G++++ + ++ ++ P Y+
Sbjct: 64 RRLNKSIENYLKL------KDIGIVLGNGASEIIELSISLFEK--------ILIIVPSYA 109
Query: 99 QYPAETD--------YLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTI--REAV-- 146
+Y D + K + ++ +PNNP+G + +E
Sbjct: 110 EYEINAKKHGVSVVFSYLDENMCIDYED-IISKIDDVDSVIIGNPNNPNGGLINKEKFIH 168
Query: 147 LAKVNRSAEGKLIHDLAYY----WPQYTPITGAADHD--IMLFTLSKCTGHAGSRIGWAL 200
+ K+ + +I D A+ P + + ++ ++ ++K G R G+ +
Sbjct: 169 VLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGI 228
Query: 201 VKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM-SERWNMLR 259
+ E+A K+ + ++ +++ A L N+ E + ER
Sbjct: 229 TNNKEIAAKIKAKQNPWN--INCFAEMAAINCL-----KDTNYIEESLLWIKKER-KRFI 280
Query: 260 QVIRQSGVFGLPEYPLEYCNF-TGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRR 318
+ + + G F + + NF + N ++ + LL+ E I+ R
Sbjct: 281 EELNKIG-FIKRVFS-PHANFVLCRLEN---------ISGEKLYDSLLK-EDIVIRRCCN 328
Query: 319 F-GADAKYARVSMLSREEIFN-IFLERLSAI 347
F G D + R ++ ++ N FL L +
Sbjct: 329 FIGLDDSFVRFAIKDEKK--NTKFLRALKGV 357
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 2e-10
Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 27/186 (14%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
+L E L+ D I++ GS ++ + A ++ G + P YS
Sbjct: 68 QKLREVAGELYGF------DPSWIIMANGSDEVLNNLIRAFAAEGEE----IGYVHPSYS 117
Query: 99 QYP-----AETDYLRSGL-YKWDGDANTFDKNNGAYIEVVNSPNNPDGT-IREAVLAKVN 151
Y GL + + + +PN P G + ++
Sbjct: 118 YYGTLAEVQGARVRTFGLTGDFRIAGFPERYEGK--VFFLTTPNAPLGPSFPLEYIDELA 175
Query: 152 RSAEGKLIHDLAYYWPQYTPITGAA---DHD--IMLFTLSKCTGHAGSRIGWALVKDTEV 206
R G L+ D Y ++ H+ ++ TLSK AG RIG A + EV
Sbjct: 176 RRCAGMLVLDETYA--EFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLA-IARPEV 232
Query: 207 ARKMTR 212
+ +
Sbjct: 233 IAALDK 238
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 9e-10
Identities = 57/334 (17%), Positives = 111/334 (33%), Gaps = 64/334 (19%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
L + H V + I++ GS++ +AA+ A +S +V Y
Sbjct: 54 LMLGNKLAAHHQV------EAPSILLTAGSSEGIRAAIEAYASLEAQ----LVIPELTYG 103
Query: 99 QYPAETDY---------LRSGLYKWDGDA--NTFDKNNGAYIEVVNSPNNPDGTIR---- 143
+ + +D + +G I + +PNNP GTI
Sbjct: 104 DGEHFAKIAGMKVTKVKMLDN-WAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADV 162
Query: 144 -EAVLAKVNRSAEGKLIHDLAYY----WPQYTPITG--AADHD--IMLFTLSKCTGHAGS 194
E +A + I D AY P++ I+ + I+L T SK AG
Sbjct: 163 IEPWIASKPANT--MFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGM 220
Query: 195 RIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSER 254
R+G+A V V M R++ ++ + + S + F Y ++
Sbjct: 221 RVGYA-VAHPTVIALMGRYV--AGEKIN-----FSGVDAALASMNDSAFITYSKKSNDVS 272
Query: 255 WNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMA 313
+L + + LP P S F + + +D + + ++
Sbjct: 273 RQILLKALED---LKLPYLP------------SEGNFVFHQLVVPLKDYQTHMADAGVLI 317
Query: 314 RGGRRFGADAKYARVSMLSREEIFNIFLERLSAI 347
+ + R+S+ + +E+ + +
Sbjct: 318 GRAFPPADN--WCRISLGTPQEM-QWVADTMREF 348
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 21/178 (11%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
EL + + ++ GS ++ Q L A PG + P YS
Sbjct: 72 VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRT----ALGFQPSYS 127
Query: 99 QYP-----AETDYLRSGL---YKWDGDA--NTFDKNNGAYIEVVNSPNNPDGT-IREAVL 147
+P T+++ ++ D D + V +PNNP G +
Sbjct: 128 MHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIV-FVTTPNNPTGDVTSLDDV 186
Query: 148 AKVNRSAEGKLIHDLAY--YWPQYTPITGAADHD---IMLFTLSKCTGHAGSRIGWAL 200
++ A G +I D AY + P + T + ++ T+SK AG R+G+ +
Sbjct: 187 ERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFV 244
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 2e-09
Identities = 65/331 (19%), Positives = 111/331 (33%), Gaps = 58/331 (17%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
L +A+ H V I+ G G T+ L +P + P ++
Sbjct: 62 FHLHQALARHHQV------PASWILAGNGETESIFTVASGL------KPRRAMIVTPGFA 109
Query: 99 QYP-------AETDY--LRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTI--REAV- 146
+Y E LR DA + +PNNP G + R +
Sbjct: 110 EYGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQ 169
Query: 147 -LAKVNRSAEGKLIHDLAYY---WPQYTPITGAADHD--IMLFTLSKCTGHAGSRIGWAL 200
+A +S LI D A+ + I D+ +L +L+K G R+G+ +
Sbjct: 170 AIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLV 229
Query: 201 VKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQ 260
D +M R S+ A + G V+ + + + E Q
Sbjct: 230 NSDDAAMARMRRQQMPWSVNA-------LAALAGEVALQDSAWQQATWHWLREEGARFYQ 282
Query: 261 VIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDED--CEKLLRAERIMARGGRR 318
+ Q L YP + L + ++ +LL +RI+ R
Sbjct: 283 ALCQLP--LLTVYP------------GRANYLLLRCEREDIDLQRRLLT-QRILIRSCAN 327
Query: 319 F-GADAKYARVSMLSREEIFN-IFLERLSAI 347
+ G D++Y RV++ S + N L L +
Sbjct: 328 YPGLDSRYYRVAIRSAAQ--NERLLAALRNV 356
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 48/335 (14%), Positives = 101/335 (30%), Gaps = 68/335 (20%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
L + + + + + + ++ G +L + L + V A P +
Sbjct: 70 SSLRKEVADFYQL------EEEELIFTAGVDELIELLTRVLLDTTT----NTVMATPTFV 119
Query: 99 QYPAETDYLRSGLYKWDGDAN-TFDKNNGAYIEVVN---------SPNNPDGTIR----- 143
QY + + + + D + ++ +PNNP G
Sbjct: 120 QYRQNALIEGAEVREIPLLQDGEHDLE--GMLNAIDEKTTIVWICNPNNPTGNYIELADI 177
Query: 144 EAVLAKVNRSAEGKLIHDLAYY----WPQYTPITGAADHD--IMLFTLSKCTGHAGSRIG 197
+A L +V ++ D AY + I+ T SK G A +R+G
Sbjct: 178 QAFLDRVPSDV--LVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVG 235
Query: 198 WALVKDTEVARKMTR----FIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253
+ + D E+ R++ F + Q A + + D F R +
Sbjct: 236 YG-IADKEIIRQLNIVRPPF------NTTSIGQKLAIEAI----KD-QAFIGECRTSNAN 283
Query: 254 RWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIM 312
++ + YP ++ F ++ + L +
Sbjct: 284 GIKQYEAFAKR--FEKVKLYP------------ANGNFVLIDLGIEAGTIFSYLEKNGYI 329
Query: 313 ARGGRRFGADAKYARVSMLSREEIFNIFLERLSAI 347
R G G R+++ E+ + + L +
Sbjct: 330 TRSGAALGFP-TAVRITIGKEEDN-SAVIALLEKL 362
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 3e-08
Identities = 62/326 (19%), Positives = 115/326 (35%), Gaps = 47/326 (14%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
+ E V +++ G+ + + + A PG ++ P Y
Sbjct: 61 KAVIENYAQYAGV------KPEQVLVSRGADEGIELLIRAFCEPGKDA---ILYCPPTYG 111
Query: 99 QYPAETDYLRSGLYKWDGDANTFDKNNGAYIEVVN--------SPNNPDGT-IREAVLAK 149
Y + + N + + + ++ SPNNP G I
Sbjct: 112 MYSVSAETIGVECRTVPTLDN-WQLDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDFRT 170
Query: 150 VNRSAEGK--LIHDLAY--YWPQYTPITGAADHD--IMLFTLSKCTGHAGSRIGWALVKD 203
+ GK ++ D AY + PQ + A++ +L TLSK AG R G+ L +
Sbjct: 171 LLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLA-N 229
Query: 204 TEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIR 263
EV + + I +S AA+ L E ++++ER ++ +
Sbjct: 230 EEVINLLMKVIA--PYPLSTPVADIAAQALS--PQGIVAMRERVAQIIAEREYLIAALKE 285
Query: 264 QSGVFGLPEYPLEYCNF-TGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGAD 322
V + + E N+ +F S F K L + I+ R + +
Sbjct: 286 IPCVEQV--FDSE-TNYILARFKASSAVF------------KSLWDQGIILRDQNKQPSL 330
Query: 323 AKYARVSMLSREEIFNIFLERLSAIQ 348
+ R+++ +REE ++ L A Q
Sbjct: 331 SGCLRITVGTREES-QRVIDALRAEQ 355
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 3e-08
Identities = 62/359 (17%), Positives = 112/359 (31%), Gaps = 73/359 (20%)
Query: 39 PELAEAINN-LHHVVDNAVS-DGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY 96
PE +AI + V D +V+ G+T + ++ L+ PG + + +PY
Sbjct: 86 PEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGD----AFLVPSPY 141
Query: 97 YSQYPAETDYLRSG-------LYKWDGDANTFDKNNGAYIE-----------VVNSPNNP 138
Y + + R+G + T AY ++ +P+NP
Sbjct: 142 YPAFNRDL-RWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNP 200
Query: 139 DGTI-REAVLAKVNRSAEGKLIH--------DLAYYWPQYTPIT--------GAADHD-- 179
GT + L V IH + PQ+ I + D
Sbjct: 201 LGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLV 260
Query: 180 IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDD 239
++++LSK G G R+G + +V + G + + L A ++SD+
Sbjct: 261 HIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAA-----MLSDE 315
Query: 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAW------ 293
F + R + R + GL ++ F W
Sbjct: 316 --KFVDNFLRESAMRLGKRHKHF----TNGLEVVGIKCLKNNAGL------FCWMDLRPL 363
Query: 294 LESK----EDEDCEKLLRAERIMARGGRRFGADAK-YARVS-MLSREEIFNIFLERLSA 346
L E ++ ++ G F + RV + +I L R+
Sbjct: 364 LRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRR 422
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 52/323 (16%), Positives = 95/323 (29%), Gaps = 63/323 (19%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPG--GPEPISVVSAAPY 96
L A+ L + ++I + GS + + G + AP
Sbjct: 78 TALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPE 137
Query: 97 Y-------------SQYPAETDYLRSGLYKWDGDA--NTFDKNNGAYIEVVNSPNNPDGT 141
Y + L G +K+ D + G V+ P NP G
Sbjct: 138 YIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLHIGEETGMI--CVSRPTNPTGN 195
Query: 142 I-----REAVLAKVNRSAEGKLIHDLA----------YYWPQYTPITGAADHD-IMLFTL 185
+ + N+ H++ + ++ + + I+ +L
Sbjct: 196 VITDEELMKLDRLANQ-------HNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSL 248
Query: 186 SKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFE 245
SK G GSR G + + + + + S+ +++ +D E
Sbjct: 249 SK-LGLPGSRCGIIIA-NDKTITAIANMNGIISLAPGGMGPAMMCEMIK--RNDLLRLSE 304
Query: 246 YGRRLM-SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEK 304
+ +R +IR+ L E G F WL K+ +
Sbjct: 305 TVIKPFYYQRVQQTIAIIRR----YLSEERCLIHKPEGAI------FLWLWFKDLPITTE 354
Query: 305 LLRAERIMARG-----GRRFGAD 322
LL +R+ ARG G F
Sbjct: 355 LL-YQRLKARGVLMVPGHYFFPG 376
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 37/198 (18%)
Query: 135 PN--NPDGTI-----REAVLAKVNRSAEGKLIHDLAYYW------PQYTPIT-------- 173
P NP G + + + + D AY + P+
Sbjct: 180 PTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDA 239
Query: 174 GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKIL 233
G D + + SK AG+ +G+ + + R +++++ SIG +K Q R K L
Sbjct: 240 GYPDRAFVFASTSK-ITFAGAGLGF-VASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFL 297
Query: 234 GIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPG--- 290
+++ ++ + +V+R L E EY +T P
Sbjct: 298 TEYPGGLEGLMRDHAAIIAPKFRAVDEVLRA----ELGEGG-EYATWT------LPKGGY 346
Query: 291 FAWLESKEDEDCEKLLRA 308
F L++ E + A
Sbjct: 347 FISLDTAEPVADRVVKLA 364
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 3e-07
Identities = 60/348 (17%), Positives = 109/348 (31%), Gaps = 91/348 (26%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
EL + + V +I+IG GS Q+ + A+++ + + + A ++
Sbjct: 68 IELKSTLAQKYKV------QNENIIIGAGSDQVIEFAIHSKLNSKN----AFLQAGVTFA 117
Query: 99 QYP-------AETDYLRSGLYKWDGDANTFDKNNGAYIEVVN---------SPNNPDGTI 142
Y A+ +S + + F E PNNP G
Sbjct: 118 MYEIYAKQCGAKCYKTQS----ITHNLDEFK----KLYETHKDEIKLIFLCLPNNPLGEC 169
Query: 143 R-----EAVLAKVNRSAEGKLIHDLAY--------YWPQYTPITGAADHD--IMLFTLSK 187
+ VN ++ D AY P + D + L T SK
Sbjct: 170 LDASEATEFIKGVNEDC--LVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSK 227
Query: 188 CTGHAGSRIGWALVKDTEVARKMTR----FIELGSIGVSKESQLRAAKILGIVSDDYPNF 243
G G RIG+ + + + + F VS + A + DD F
Sbjct: 228 LYGLGGLRIGYGIA-NANIISAFYKLRAPF------NVSNLALKAAVAAM----DD-DEF 275
Query: 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DE 300
E + + ++ ++ + S+ F E +
Sbjct: 276 TEKTLENNFSQMELYKEFAKK---HNIKIID------------SYTNFITYFFDEKNSTD 320
Query: 301 DCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFN-IFLERLSAI 347
EKLL+ + I+ R + +G + R+++ + E N F I
Sbjct: 321 LSEKLLK-KGIIIRNLKSYGLN--AIRITIGTSYE--NEKFFTEFDKI 363
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 3e-07
Identities = 69/345 (20%), Positives = 119/345 (34%), Gaps = 78/345 (22%)
Query: 39 PELAEAINN-LHHVVDNAVS-DGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY 96
P +A+ + + + N V+ D H+V+ G+T + ++ L+ PG +V+ PY
Sbjct: 89 PAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGE----AVLIPTPY 144
Query: 97 YSQYPAETDYLRSG-------LYKWDGDANTFDKNNGAYIE-----------VVNSPNNP 138
Y + + R+G +G T AY E +V +P+NP
Sbjct: 145 YPGFDRDL-KWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNP 203
Query: 139 DGTI-REAVLAKVNRSAEGKLIH--------DLAYYWPQYTPI------------TGAAD 177
GT L + E K IH A+ P + + +
Sbjct: 204 LGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQ 263
Query: 178 HDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVS 237
++++LSK G G R+G D V T+ G VS ++Q + +L S
Sbjct: 264 RVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGL--VSSQTQHLLSAML---S 318
Query: 238 DD--YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAW-- 293
D N+ + + +R L +++SG + N F W
Sbjct: 319 DKKLTKNYIAENHKRLKQRQKKLVSGLQKSG--------ISCLNGNAGL------FCWVD 364
Query: 294 ----LESK----EDEDCEKLLRAERIMARGGRRFGADAK-YARVS 329
L S E E +K++ + G + RV
Sbjct: 365 MRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVC 409
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 4e-07
Identities = 32/192 (16%), Positives = 60/192 (31%), Gaps = 41/192 (21%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
P + + ++++ G + + V+A P +
Sbjct: 54 PRVMRKLAEHFSC------PEDNLMLVRGIDECFDRISAEF---SSMR---FVTAWPGFD 101
Query: 99 QYPAETDY---------LRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTIR-----E 144
Y A L D + + + V+ +P+NP G +
Sbjct: 102 GYRARIAVSGLRHFEIGLTDD-LLLDPND--LAQVSRDDCVVLANPSNPTGQALSAGELD 158
Query: 145 AVLAKVNRSAEGKLIHDLAYYWPQYT--PITGAADHD--IMLFTLSKCTGHAGSRIGWAL 200
+ + GKL+ D Y Y+ G A + ++ + SK G AG R+G
Sbjct: 159 QLRQRA-----GKLLIDETYV--DYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALF 211
Query: 201 VKDTEVARKMTR 212
+E+ M R
Sbjct: 212 G-PSELIAAMKR 222
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 4e-07
Identities = 46/278 (16%), Positives = 87/278 (31%), Gaps = 59/278 (21%)
Query: 93 AAPYYSQYPAETDYLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTI------REAV 146
A E D+ + + + ++NSPNNP G V
Sbjct: 130 AKSLLMPLTKENDFTP------SLNEKELQE---VDLVILNSPNNPTGRTLSLEELISWV 180
Query: 147 -LAKVNRSAEGKLIHDLAY---YW---------PQYTPITGAADHDIMLFTLSKCTGHAG 193
LA + LI+D Y Y A + +++ +LSK + G
Sbjct: 181 KLALKHDFI---LINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPG 237
Query: 194 SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253
R G+ D+ + K F + Q + DD E+ R + +
Sbjct: 238 LRSGFI-AGDSRLLEKYKAFRAYLGYTSANAIQKASEAAW---LDD--RHAEFFRNIYAN 291
Query: 254 RWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDC-EKLLRAERIM 312
+ R++ + + F + +L + E+ + L + E I+
Sbjct: 292 NLKLARKIFKN---TLIYP---------YSF------YVYLPVQNGENFAKTLYQNEGII 333
Query: 313 ARGGRRFGAD---AKYARVSMLSREEIFNIFLERLSAI 347
G + A Y R++++ + LE +
Sbjct: 334 TLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETY 371
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 6e-07
Identities = 57/356 (16%), Positives = 114/356 (32%), Gaps = 85/356 (23%)
Query: 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYY 97
E I + ++ A + + +++ +G +Q L L++PG +++ P +
Sbjct: 98 FLSSREEIAS-YYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQ----NILVPRPGF 152
Query: 98 SQYPAETDYLRSGLYKWDGDANTF--DKNNG-----AYIE----------VVNSPNNPDG 140
S Y + + + + +E +VN+P+NP G
Sbjct: 153 SLYKTLAESM-------GIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCG 205
Query: 141 TI-REAVLAKVNRSAEGKLIH--------DLAYYWPQYTPITGAADHDIMLFT---LSKC 188
++ + L K+ A + + D+ + +Y P+ D+ + + L+K
Sbjct: 206 SVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPL-ATLSTDVPILSCGGLAKR 264
Query: 189 TGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLR----------AAKILGIVSD 238
G R+GW L+ D + G+ K SQ IL
Sbjct: 265 WLVPGWRLGWILIHD-RRDIFGNEIRD----GLVKLSQRILGPCTIVQGALKSILCRTPG 319
Query: 239 DYPNFFEYGRRLMSER----WNMLRQ-----VIRQSGVFGLPEYPLEYCNFTGKFTNSHP 289
+ F+ + + L +R SG Y G P
Sbjct: 320 E---FYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAM--------YL-MVGIEMEHFP 367
Query: 290 GFAWLESKEDED-CEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERL 344
F + D + E+L+ + + F + RV + E + R+
Sbjct: 368 EF-----ENDVEFTERLVAEQSVHCLPATCFEYP-NFIRVVITVPEVMMLEACSRI 417
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 8e-07
Identities = 42/204 (20%), Positives = 80/204 (39%), Gaps = 38/204 (18%)
Query: 39 PELAEAI-NNLHHVVDNAVS-DGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY 96
E AI L++ + + ++ + G+ AL+S E ++ APY
Sbjct: 79 VETRAAIAEFLNN--THGTHFNADNLYMTMGAAASLSICFRALTSDAYDE---FITIAPY 133
Query: 97 YSQYPAETDYLRSGLYKWDGDANTFDKNNGAYIE----------VVNSPNNPDGTI--RE 144
+ +Y + + L + D F + + +E ++NSPNNP GT+ E
Sbjct: 134 FPEYKVFVNAAGARLVEVPADTEHF-QIDFDALEERINAHTRGVIINSPNNPSGTVYSEE 192
Query: 145 AV--LAKVNRSAEGKLIHD-----------LAYYWPQYTPITGAADHDIMLFTLSKCTGH 191
+ L+ + ++ + Y + +T D+ ++ ++ SK
Sbjct: 193 TIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKS--L 250
Query: 192 A--GSRIGWALVKDTEVARKMTRF 213
+ G RIG+ LV D EV K +
Sbjct: 251 SLPGERIGYVLVPD-EVYDKAELY 273
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 8e-07
Identities = 47/234 (20%), Positives = 89/234 (38%), Gaps = 38/234 (16%)
Query: 56 VSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY--------- 106
V G +++G GS ++ A + PG V++ P + Y +
Sbjct: 82 VPAGMEVLLGNGSDEIISMLALAAARPGAK----VMAPVPGFVMYAMSAQFAGLEFVGVP 137
Query: 107 LRSGLYKWDGDA--NTFDKNNGAYIEVVNSPNNPDGT-IREAVLAKVNRSAEGKLIHDL- 162
LR+ + D A ++ A + + PNNP G A + + R+A+G + L
Sbjct: 138 LRAD-FTLDRGAMLAAMAEHQPAIV-YLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLV 195
Query: 163 ----AYYWPQYTP---ITGAADHD--IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRF 213
AY + ++ D +++ T+SK G AG R+G+ D + ++ +
Sbjct: 196 VVDEAYQ--PFAQESWMSRLTDFGNLLVMRTVSK-LGLAGIRLGYVAG-DPQWLEQLDKV 251
Query: 214 IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV 267
V+ ++ A L + E +L +ER + + GV
Sbjct: 252 RP--PYNVNVLTEATALFAL----EHVAVLDEQAAQLRAERSRVAEGMAAHGGV 299
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 18/101 (17%)
Query: 131 VVNSPNNPDGTI------REAV-LAKVNRSAEGKLIHDLAY---YWPQYTP-----ITGA 175
+ SPNNP GT+ R V A + ++ D AY P I A
Sbjct: 168 CLCSPNNPTGTVLNKDQLRAIVHYAIEHEIL---ILFDAAYSTFISDPSLPKSIFEIPDA 224
Query: 176 ADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL 216
I + + SK G AG R+GW ++ I+
Sbjct: 225 RFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQD 265
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 36/193 (18%)
Query: 137 NPDGTI-----REAVLAKVNRSAEGKLIHDLAYYW-------PQYTPITGAA------DH 178
NP G + + A + + +++ D AY P+ I G +
Sbjct: 192 NPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNR 251
Query: 179 DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD 238
+ SK AG+ + + + E + T + IG +K +QL A+ G ++
Sbjct: 252 FWAFTSTSK-ITLAGAGVSF-FLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFG-DAE 308
Query: 239 DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPG---FAWLE 295
++ ++N + +++ L EY + +T P F L+
Sbjct: 309 GVRAVMRKHAASLAPKFNKVLEILDS----RLAEYGV--AQWT------VPAGGYFISLD 356
Query: 296 SKEDEDCEKLLRA 308
A
Sbjct: 357 VVPGTASRVAELA 369
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 32/197 (16%), Positives = 60/197 (30%), Gaps = 38/197 (19%)
Query: 135 PN--NPDGTI-----REAVLAKVNRSAEGKLIHDLAY----------YWPQYTPITGAAD 177
P NP G + + + +++ D AY AA
Sbjct: 186 PVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAG 245
Query: 178 HD---IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILG 234
+ + + SK T HAGS + + E + IG +K +QL A+ G
Sbjct: 246 NPNRFWFMSSTSKIT-HAGSGVSF-FASSKENIEWYASHANVRGIGPNKLNQLAHAQFFG 303
Query: 235 IVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPG---F 291
++ ++ + +++ L EY + K+T P F
Sbjct: 304 -DVAGLKAHMLKHAASLAPKFERVLEILDS----RLSEYGV------AKWT--SPTGGYF 350
Query: 292 AWLESKEDEDCEKLLRA 308
++ + A
Sbjct: 351 ISVDVVPGTASRVVELA 367
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 131 VVNSPNNPDGTI------REAV-LAKVNRSAEGKLIHDLAY---YWPQYTP-----ITGA 175
SPNNP G E V A+ N S L++D AY P I GA
Sbjct: 214 FFCSPNNPTGAAATRAQLTELVNFARKNGSI---LVYDAAYALYISNPDCPKTIYEIPGA 270
Query: 176 ADHDIMLFTLSKCTGHAGSRIGWALV 201
+ I + SK G G R+GW +V
Sbjct: 271 DEVAIETCSFSKYAGFTGVRLGWTVV 296
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 5e-06
Identities = 55/366 (15%), Positives = 110/366 (30%), Gaps = 97/366 (26%)
Query: 39 PELAEAI-----NNLHHVVDNAVS-DGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVS 92
PE EA+ N+ H + + ++V+ +G + A+ A+ G +
Sbjct: 78 PEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGD----YALV 133
Query: 93 AAPYYSQYPAETDYLRSGL----YKWDGDAN---TFDKNNGAYIE----------VVNSP 135
P + Y G+ Y + + D+ I +V +P
Sbjct: 134 PQPGFPHYETVCKA--YGIGMHFYNCRPENDWEADLDE-----IRRLKDDKTKLLIVTNP 186
Query: 136 NNPDGTI-REAVLAKVNRSAE------------GKLIHDLAYYWPQYTPITGAADHDIML 182
+NP G+ + + R AE ++ +T + + +
Sbjct: 187 SNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSV-ADFETTVPR 245
Query: 183 FT---LSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLR----------A 229
+K G R+GW L D F+E G+ + L
Sbjct: 246 VILGGTAKNLVVPGWRLGWLLYVDPH--GNGPSFLE----GLKRVGMLVCGPCTVVQAAL 299
Query: 230 AKILGIVSDDYPNFFEYGRRLMSER----WNMLRQ-----VIRQSGVFGLPEYPLEYCNF 280
+ L + + + E +N + + G Y
Sbjct: 300 GEALLNTPQE---HLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAM--------YL-- 346
Query: 281 TGKFTN-SHPGFAWLESKEDED-CEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFN 338
+ + +++ D + EKLL E + G F A + R++ E++
Sbjct: 347 ---MSRIDLEKYRDIKT--DVEFFEKLLEEENVQVLPGTIFHAPG-FTRLTTTRPVEVYR 400
Query: 339 IFLERL 344
+ER+
Sbjct: 401 EAVERI 406
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 54/336 (16%), Positives = 100/336 (29%), Gaps = 63/336 (18%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQ----LYQAALYALSSPGGPEPISVVSA- 93
+A+ + + +I + GS L+ A + + S
Sbjct: 86 SAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDK 145
Query: 94 ------APYYSQYPAETDYLRS-GLYKWDGDANTFDKNNGAYIE---------------- 130
P Y Y + D T D G +
Sbjct: 146 SILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEG 205
Query: 131 -----VVNSPNNPDG-TIREAVLAKVNRSAEGK---LIHDLAY----YWPQYTPIT-GAA 176
+ P NP G + + +A + A+ LI D AY Y+
Sbjct: 206 RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWD 265
Query: 177 DHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIV 236
++ I+ F+LSK G G R G + D +V ++ + ++ ++ A ++
Sbjct: 266 NNTILCFSLSK-IGLPGMRTGIIVA-DAKVIEAVSAMNAVVNLAPTRFGAAIATPLVAND 323
Query: 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES 296
+ ++ + ++++Q L +YPL G F WL
Sbjct: 324 RIK-QLSDNEIKPFYQKQATLAVKLLKQ----ALGDYPLMIHKPEGAI------FLWLWF 372
Query: 297 KEDE-DCEKLLRAERIMARG-----GRRFGADAKYA 326
K+ L ER+ A+G F +
Sbjct: 373 KDLPISTLDL--YERLKAKGTLIVPSEYFFPGVDVS 406
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 48/230 (20%), Positives = 91/230 (39%), Gaps = 35/230 (15%)
Query: 131 VVNSPNNPDGTI-REAVLAKVNRSAEGK---LIHDLAY---YWPQYTP----ITGAADHD 179
+ PNNP G+ + V + +G ++HD AY + P D
Sbjct: 186 YLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVA 245
Query: 180 IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDD 239
I +++LSK +G R+G+A V + ++ + + ++ + G+ Q A L +
Sbjct: 246 IEIYSLSKGYNMSGFRVGFA-VGNKDMIQALKKYQTHTNAGMFGALQDAAIYAL----NH 300
Query: 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED 299
Y +F E + R R L + L + + G + WLE+
Sbjct: 301 YDDFLEEQSNVFKTR----RDRF----EAMLAKADLPFVHAKGGI------YVWLETPPG 346
Query: 300 ED----CEKLLRAERIMARGGRRFGADAK-YARVSMLSREEIFNIFLERL 344
D + L++ + I+ G+ FG + Y R+S+ ++ + RL
Sbjct: 347 YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRL 396
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 63/358 (17%), Positives = 101/358 (28%), Gaps = 84/358 (23%)
Query: 39 PELAEAINNLHHVVDNAVS-DGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYY 97
P L + I + V D +VI GS+ + A AL G V AP Y
Sbjct: 71 PALRQRIAR-LYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGD----RVGIGAPGY 125
Query: 98 SQYP----------------AETDYLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGT 141
Y E + G +V SP NP GT
Sbjct: 126 PSYRQILRALGLVPVDLPTAPENRL------QPVPADFAGLDLAGL---MVASPANPTGT 176
Query: 142 I--REAV--LAKVNRSAEGKLI-----HDLAYYWPQYTPITGAADHDIMLFTLSKCTGHA 192
+ A+ L + ++ I H + Y T D ++ + SK
Sbjct: 177 MLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVT-ALELTDECYVINSFSKYFSMT 235
Query: 193 GSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMS 252
G R+GW +V + R + R + I SQ+ A L ++ N Y
Sbjct: 236 GWRVGWMVV-PEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKAN--- 291
Query: 253 ERWNMLRQVIRQSGVFGLPEYPLEYCN-----F-----TGKFTNSHPGFAWLESKEDEDC 302
R+++ + LP+ F T+ F
Sbjct: 292 ------RKLM----LERLPKAGFTRIAPPDGAFYVYADVSDLTDDSRAF----------A 331
Query: 303 EKLLRAERIMARGGRRFGADA--KYARVS-MLSREEI------FNIFLERLSAIQGGS 351
++L + G F + R S + +I F++
Sbjct: 332 AEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQARGEGHHHH 389
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 22/88 (25%)
Query: 131 VVNSPNNPDGTI------REAV-LAKVNRSAEGKLIHDLAY---YWPQYTP--------- 171
V SPNNP G++ +E L + D Y Y+ P
Sbjct: 173 FVCSPNNPSGSVLDLDGWKEVFDLQDKYGFI---IASDECYSEIYFDGNKPLGCLQAAAQ 229
Query: 172 ITGAADHDIMLFTLSKCTGHAGSRIGWA 199
+ + +M +LSK + G R G+
Sbjct: 230 LGRSRQKLLMFTSLSKRSNVPGLRSGFV 257
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Query: 131 VVNSPNNPDGTI------REAV-LAKVNRSAEGKLIHDLAY--YWPQYTP-----ITGAA 176
SPNNP G + V AK N S +++D AY Y P I GA
Sbjct: 203 FFCSPNNPTGAAATREQLTQLVEFAKKNGSI---IVYDSAYAMYMSDDNPRSIFEIPGAE 259
Query: 177 DHDIMLFTLSKCTGHAGSRIGWALV 201
+ + + S G G R+GW ++
Sbjct: 260 EVAMETASFSNYAGFTGVRLGWTVI 284
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 60/354 (16%), Positives = 113/354 (31%), Gaps = 89/354 (25%)
Query: 40 ELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS- 98
+L ++N + + + +GS Q + +PG V+ P YS
Sbjct: 89 QLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDN----VLLDEPAYSG 144
Query: 99 ------QYPAE------------TDYLRSGLYKWDGDANTFDKNNGA---YIEVVNSPN- 136
D LR L +W + + N Y PN
Sbjct: 145 TLQSLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYT----VPNG 200
Query: 137 -NPDGTI-----REAVLAKVNRSAEGKLIHDL------AYYWPQYTPIT----GAADHD- 179
NP G ++ + + +D YY+ Q+ + D D
Sbjct: 201 NNPTGNSLTSERKKEIYELARK-------YDFLIIEDDPYYFLQFNKFRVPTFLSMDVDG 253
Query: 180 --IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKIL-GIV 236
I + SK +G RIG+ L + ++ I++ ++ S +QL +++L
Sbjct: 254 RVIRADSFSK-IISSGLRIGF-LTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWG 311
Query: 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPG---FAW 293
+ + + S + + + + L + P F W
Sbjct: 312 EEGFMAHVDRVIDFYSNQKDAILAAADKW----LT----GLAEWH------VPAAGMFLW 357
Query: 294 LESKEDEDCEKLLRAERIMARG-----GRRFGADAK----YARVS--MLSREEI 336
++ K D ++L+ E+ + G G F D+ Y R S S E++
Sbjct: 358 IKVKGINDVKELI-EEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQM 410
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 5e-05
Identities = 67/460 (14%), Positives = 128/460 (27%), Gaps = 163/460 (35%)
Query: 1 MAFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVP-----------------ELAE 43
M F+ FW L C S ++ L + + + P +
Sbjct: 180 MDFKIFWLNLK-NCN---SPETVLEMLQ---KLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 44 AINNLHH---------VVDNAVSDGRH---------IVIGT------------------- 66
+ L V+ N V + + I++ T
Sbjct: 233 ELRRLLKSKPYENCLLVLLN-VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 67 -----GSTQLYQAALYA--LSSPGGPEPISVVSAAPYY-SQYPAETDYLRSGLYKWDG-- 116
T +L L P V++ P S +R GL WD
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES---IRDGLATWDNWK 348
Query: 117 --DANTFDKNNGAYIEVVNSPNN----------PDGT-IREAVLA----KVNRSAEGKLI 159
+ + + + V+ P I +L+ V +S ++
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 160 HDLAYY-----WPQYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI 214
+ L Y P+ + I+ I L K + + R + +
Sbjct: 409 NKLHKYSLVEKQPKESTIS---IPSIYLELKVKLE------------NEYALHRSI---V 450
Query: 215 ELGSIGVSKESQLRAAKILGIVSDDYPNFFEY-GRRL----MSERWNMLRQV-------- 261
+ +I + +S ++ D Y F+ + G L ER + R V
Sbjct: 451 DHYNIPKTFDSD----DLIPPYLDQY--FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 262 --IRQSGVFGLPEYPL--------EYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERI 311
IR + Y + ++ P + E + + L + E
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPY---ICDNDPKY---ERLVNAILDFLPKIEEN 558
Query: 312 MARGGRRFGADAKYA---RVSMLSREEIFNIFLERLSAIQ 348
+ +KY R+++++ +E IF E +Q
Sbjct: 559 LIC--------SKYTDLLRIALMAEDE--AIFEEAHKQVQ 588
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 57/374 (15%), Positives = 114/374 (30%), Gaps = 87/374 (23%)
Query: 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYY 97
+ L +AI + D ++ I + G++ + L ++ P Y
Sbjct: 136 IHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDG---ILVPIPQY 192
Query: 98 SQYPAET--------DYLRSGLYKWDGDAN----TFDKNNGAYIE----VVNSPNNPDGT 141
Y A Y + W + + + I VV +P NP G
Sbjct: 193 PLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQ 252
Query: 142 I--REAV--LAKVNRSAEGKLIHDLAYY------------WPQYTPITGAADHDIMLFT- 184
+ E + K ++ L+ D Y + + G + D+ L +
Sbjct: 253 VLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSY 312
Query: 185 --LSK-CTGHAGSRIGWALV--KDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDD 239
+SK G G R G+ + V ++ + + S+ + + +V +
Sbjct: 313 QSVSKGYYGECGKRGGYFEITGFSAPVREQIYK---IASVNLCSNITGQIL--ASLVMNP 367
Query: 240 YPNFFEYGRRLMSERWNMLRQVIRQS-----------GV--------------FGLPEYP 274
E +E+ +L + R++ G+ LP+
Sbjct: 368 PKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKA 427
Query: 275 LEYCNFTGKFTNSHPGFAWLESKEDED-CEKLLRAERIMARGGRRFGADAK--YARVSML 331
+E K D +LL + I+ G FG + R ++L
Sbjct: 428 IEAAKAANKAP-------------DAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL 474
Query: 332 SREEIFNIFLERLS 345
+E+ + R +
Sbjct: 475 PQEDKIPAVISRFT 488
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 60/370 (16%), Positives = 107/370 (28%), Gaps = 80/370 (21%)
Query: 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQ-LYQAALYALSSPGGP--EPISVVSAA 94
+PEL + + + N R V GS Q + + L A + +
Sbjct: 84 LPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYG---TLFID 140
Query: 95 PYYSQYPAETDYLRSGLYKWDGDANTFDKNNGAYIE----------VVNSPNNPDGTI-- 142
P ++ + L +D +K + ++PNNP
Sbjct: 141 PGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMT 200
Query: 143 REAV--LAKVNRSAEGKLIHDLAY----Y---------WPQYTPITGAADHDIMLFTLSK 187
E + + ++ + +I DLAY + + D+ I+ + SK
Sbjct: 201 DEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSK 260
Query: 188 CTGHA--GSRIGWALVKDTEVARKMTRFIELG-----------------SIGVSKESQLR 228
+ G RIG ++ R+ E S G + +Q
Sbjct: 261 --AFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWG 318
Query: 229 AAKILGIVSDDYPNF----FEYGRR--LMSERWNMLRQVIRQSGVFGLPEYPLEYCNF-T 281
A +L +D NF EYGR+ +M + + G + N
Sbjct: 319 MAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN----------GFNIVYDKDGNEPL 368
Query: 282 GKF---TNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAK-YARVSMLSREEIF 337
T + G + EK +R + + L E F
Sbjct: 369 ADGFYFTVGYKGM-----DSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLLPESQF 423
Query: 338 NIFLERLSAI 347
+RL +
Sbjct: 424 PDLEKRLQML 433
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 68/361 (18%), Positives = 119/361 (32%), Gaps = 59/361 (16%)
Query: 38 VPELAEAINNLHHVVDNAV-SDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY 96
V + E + D V +D +I + TG++ L L S GG V+ P
Sbjct: 131 VNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQ 190
Query: 97 YSQYPAETD--------YLRSGLYKWDGDANTF-----DKNNGAYIE--VVNSPNNPDGT 141
Y Y A Y W + N + + + + +P NP G
Sbjct: 191 YPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQ 250
Query: 142 I--REAVLAKVNRSAEGKLI--HDLAY----YWPQYTPITGAA---------DHDIMLFT 184
+ R+ + ++ + E KL D Y Y P + ++ L +
Sbjct: 251 VQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELAS 310
Query: 185 ---LSKCT-GHAGSRIGWALV--KDTEVARKMTRFIELGSIGVSK--ESQLRAAKILGIV 236
SK G G R G+ V E+ ++ + L S+ + Q ++
Sbjct: 311 FHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVK---LLSVRLCPPVSGQAAMDIVVNPP 367
Query: 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFT-GKF----TNSHPGF 291
+F ++ R S N+ ++ + + P +CN G P
Sbjct: 368 VAGEESFEQFSREKESVLGNLAKK--AKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAK 425
Query: 292 AWLESKE-----DED-CEKLLRAERIMARGGRRFGADA--KYARVSMLSREEIFNIFLER 343
A ++ D C KLL I G FG + R+++L E L++
Sbjct: 426 AVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQK 485
Query: 344 L 344
+
Sbjct: 486 V 486
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 47/237 (19%), Positives = 85/237 (35%), Gaps = 39/237 (16%)
Query: 131 VVNSPNNPDGTI-REAVLAKVNRSAEGK---LIHDLAY---YWPQYTP-----ITGAADH 178
++ P+NP +V A+ ++HDLAY + + + GA D
Sbjct: 177 ILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDI 236
Query: 179 DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD 238
+ FTLSK AG RIG+ V + E+ + R G Q+ A L +
Sbjct: 237 AVEFFTLSKSYNMAGWRIGFM-VGNPELVSALARIKSYHDYGTFTPLQVAAIAAL----E 291
Query: 239 DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE 298
R +R ++L + +R++G N + W + E
Sbjct: 292 GDQQCVRDIARQYQQRRDVLVKGLREAG--------WMVENPKASM------YVWAKIPE 337
Query: 299 -------DEDCEKLLRAERIMARGGRRFGADAK-YARVSMLSREEIFNIFLERLSAI 347
E +KLL+ ++ G FG + R +++ + + + A+
Sbjct: 338 PYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAM 394
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 131 VVNSPNNPDGTI-REAVLAKVNRSAEGK---LIHDLAY---YWPQYTP----ITGAADHD 179
++N PNNP G + + A LIHD Y + P + GA +
Sbjct: 163 LLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERV 222
Query: 180 IMLFTLSKCTGHAGSRIGWAL 200
+ LF+LSK AG R+G+AL
Sbjct: 223 VELFSLSKSYNLAGFRLGFAL 243
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 20/149 (13%)
Query: 61 HIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYL----RSGLYKWDG 116
++ +G G+ ++ + V P YS Y + D
Sbjct: 78 NVSVGNGADEIIYVMMLMFDRS--------VFFPPTYSCYRIFAKAVGAKFLEVPLTKDL 129
Query: 117 DANTFDKNNGAYIEVVNSPNNPDGTI--REAVLAKVNRSAEGKLIHDLAYY-WPQYTPIT 173
+ G + + +PNNP G + RE + + + D AYY + + +
Sbjct: 130 RIPEVNVGEGDVV-FIPNPNNPTGHVFEREEIERILK--TGAFVALDEAYYEFHGESYVD 186
Query: 174 GAADHD--IMLFTLSKCTGHAGSRIGWAL 200
++ ++ T SK A R+G+ +
Sbjct: 187 FLKKYENLAVIRTFSKAFSLAAQRVGYVV 215
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 53/361 (14%), Positives = 121/361 (33%), Gaps = 95/361 (26%)
Query: 39 PELAEAI-------NNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVV 91
EL EA + +N +++ G ++ + +++PG E ++
Sbjct: 82 WELREAFASYYKRRQRVDVKPEN-------VLVTNGGSEAILFSFAVIANPGD-E---IL 130
Query: 92 SAAPYYSQYPAETDYLRSGLYKWDGDANTFDKNNGAYIE-------------VVNSPNNP 138
P+Y+ Y A + + A + V+++P NP
Sbjct: 131 VLEPFYANYNAFAK-IAGVKLIP---VTRRMEEGFAIPQNLESFINERTKGIVLSNPCNP 186
Query: 139 DGTI-REAVLAKVNRSAEGK---LIHD-----LAYYWPQYTPITGAADHDIMLFTLSKCT 189
G + + + + AE LI D + + + ++ +D +++ ++SK
Sbjct: 187 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSK-- 244
Query: 190 GHA--GSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFF--E 245
+ G+R+G + ++ E+ + + G + Q+ + +L + D + +F
Sbjct: 245 KFSACGARVGCLITRNEELISHAMKLAQ-GRLAPPLLEQIGSVGLLN-LDDSFFDFVRET 302
Query: 246 YGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPG-----FAWLESKEDE 300
Y R + + + L E+ L+ P A L ++ E
Sbjct: 303 YRER---------VETV----LKKLEEHGLKRFT--------KPSGAFYITAELPVEDAE 341
Query: 301 D-CEKLL-----RAERIMARGGRRFGADAK----YARVS-MLSREEI------FNIFLER 343
+ +L E M R F R++ +L ++ + L+
Sbjct: 342 EFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKM 401
Query: 344 L 344
Sbjct: 402 F 402
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.98 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.98 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.98 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.98 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.98 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.97 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.97 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.97 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.97 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.97 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.97 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.97 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.97 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.97 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.97 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.97 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.97 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.97 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.97 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.97 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.97 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.97 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.97 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.97 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.97 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.97 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.96 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.96 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.96 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.96 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.96 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.96 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.96 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.96 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.96 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.96 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.96 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.96 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.96 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.95 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.95 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.95 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.95 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.95 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.95 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.95 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.95 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.95 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.95 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.95 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.95 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.95 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.95 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.95 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.95 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.95 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.95 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.95 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.94 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.94 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.94 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.94 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.94 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.94 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.94 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.94 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.94 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.94 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.94 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.94 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.94 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.94 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.94 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.93 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.93 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.93 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.93 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.93 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.93 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.93 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.93 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.93 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.93 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.93 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.93 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.93 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.92 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.92 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.92 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.92 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.92 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.92 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.92 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.92 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.92 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.92 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.92 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.91 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.91 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.91 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.91 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.91 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.91 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.91 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.91 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.9 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.9 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.9 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.9 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.9 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.9 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.9 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.9 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.9 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.9 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.89 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.89 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.88 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.88 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.88 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.88 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.88 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.88 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.87 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.87 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.87 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.87 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.86 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.86 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.86 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.86 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.86 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.85 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.84 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.84 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.83 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.72 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.81 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.81 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.8 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.79 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.79 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.78 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.62 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.49 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.49 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.44 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.37 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.34 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.32 |
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=348.01 Aligned_cols=322 Identities=60% Similarity=1.029 Sum_probs=263.8
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCC----CCCceEEEeCCCCC
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGG----PEPISVVSAAPYYS 98 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd----~~~~~vl~~~p~~~ 98 (360)
....|++..|.|+...++||++++++++.+|..+.++++|++|+|+++++++++..++++|| + |++++|+|.
T Consensus 55 ~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~----Vlv~~P~y~ 130 (391)
T 3bwn_A 55 LMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVS----VVAAAPFYS 130 (391)
T ss_dssp TCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEE----EEECSSCCT
T ss_pred hhhcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcce----EEEcCCCch
Confidence 44568888773111118999999999998898888767999999999999999999999999 7 999999999
Q ss_pred CcHHHHHHhCCeeeeecCCccccccCCCeeEEEEcCCCCCCcccchHHHHHHhhhcC--cEEEEeecccCCCCCcCCCCC
Q 018172 99 QYPAETDYLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAE--GKLIHDLAYYWPQYTPITGAA 176 (360)
Q Consensus 99 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~--~~li~D~ay~~~~~~~~~~~~ 176 (360)
.+...++..|++++.+++|.+++. .+++++|++++||||||.++++++. ++++ +++|+|++|.++...++....
T Consensus 131 ~~~~~~~~~g~~~~~~~~d~~~l~-~~~~k~v~l~~p~NPtG~~~~~l~~---~~~~~~~~ii~De~y~~~~~~~l~~~~ 206 (391)
T 3bwn_A 131 TYVEETTYVRSGMYKWEGDAWGFD-KKGPYIELVTSPNNPDGTIRETVVN---RPDDDEAKVIHDFAYYWPHYTPITRRQ 206 (391)
T ss_dssp HHHHHHHTTCBTTEEEEEESTTCC-CCSCEEEEEESSCTTTCCCCCCCC--------CCCEEEEECTTCSTTTSCCCCCB
T ss_pred hHHHHHHHcCCeEEEecCCHHHcC-CCCCEEEEECCCCCCCchhHHHHHH---HhhcCCCEEEEeCCCCCCCCCccccCC
Confidence 999999999999999998888877 3578999999999999999984322 2255 999999999965444454456
Q ss_pred CccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCC------CchhHHHHHHHH
Q 018172 177 DHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD------DYPNFFEYGRRL 250 (360)
Q Consensus 177 ~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~ 250 (360)
+++++++||||+||++|+|+||++++++++++.+...+.....+.+.+.|.++.++++.... .++.+++++++.
T Consensus 207 ~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 286 (391)
T 3bwn_A 207 DHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREM 286 (391)
T ss_dssp CCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHH
T ss_pred CCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHH
Confidence 88999999999999999999999865789999999888766788999999999998874210 013789999999
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe
Q 018172 251 MSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSM 330 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~ 330 (360)
++++++.+.+.|++++++.+..|.++.+.|.....+..++|+|+++++.+.+.++|+++||.++||+.|+..++++|||+
T Consensus 287 ~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~ 366 (391)
T 3bwn_A 287 MKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKVMSRAGERCGSDKKHVRVSM 366 (391)
T ss_dssp HHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTEECEEGGGGTCCTTEEEEES
T ss_pred HHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCEEEccCCCCCCCCCEEEEEe
Confidence 99999999999999877777667776655544444566778999997556788889999999999999986578999999
Q ss_pred cCChHHHHHHHHHHHHHHhchh
Q 018172 331 LSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 331 ~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
+.++|++++++++|++++++.+
T Consensus 367 ~~~~e~i~~~~~~L~~~~~~~~ 388 (391)
T 3bwn_A 367 LSREDVFNVFLERLANMKLIKS 388 (391)
T ss_dssp CSCHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHHHHhhc
Confidence 8889999999999999886643
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=316.21 Aligned_cols=299 Identities=21% Similarity=0.284 Sum_probs=243.9
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. +++|++++++++. +|..+++ ++|++|+|+++++++++..++++||+ |+++.|+|..+...
T Consensus 62 ~~y~~~~g~-----~~lr~~ia~~~~~~~g~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~----Vlv~~p~y~~~~~~ 131 (385)
T 1b5p_A 62 TKYAPPAGI-----PELREALAEKFRRENGLSVTP-EETIVTVGGSQALFNLFQAILDPGDE----VIVLSPYWVSYPEM 131 (385)
T ss_dssp CSCCCTTCC-----HHHHHHHHHHHHHTTCCCCCG-GGEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCTHHHHH
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCh-HHEEEcCChHHHHHHHHHHhcCCCCE----EEEcCCCchhHHHH
Confidence 458777777 9999999999875 4666665 48999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCc-ccccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC
Q 018172 104 TDYLRSGLYKWDGDA-NTFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~-~~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
++..|++++.++.+. +++.. ++++++|++++||||||.+++ +.+.++|+++|+++|+|++|.+..+
T Consensus 132 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~ 211 (385)
T 1b5p_A 132 VRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY 211 (385)
T ss_dssp HHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS
T ss_pred HHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhccc
Confidence 999999999998874 23221 357899999999999999988 3456778889999999999986322
Q ss_pred ----CcCCC-CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHH
Q 018172 170 ----TPITG-AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFF 244 (360)
Q Consensus 170 ----~~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (360)
.++.. ..+++++++||||.++++|+|+||+++ ++++++.+.+.+.....+.+.+.|.++.++++..... ..++
T Consensus 212 ~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~ 289 (385)
T 1b5p_A 212 EGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACG-PKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEAS-RAFV 289 (385)
T ss_dssp SSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHH-HHHH
T ss_pred CCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEe-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcc-hHHH
Confidence 12211 117899999999999999999999999 8999999988877677789999999998888620001 2678
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC----chHHHHHHHHhhCeeeeCCCCCC
Q 018172 245 EYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK----EDEDCEKLLRAERIMARGGRRFG 320 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gI~~~pg~~f~ 320 (360)
++.++.++++++++.+.|+++ ++.+..+.+++ |+|++++ +...+.+.|.++||.++||..|+
T Consensus 290 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~ 355 (385)
T 1b5p_A 290 EMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAF-------------YVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFA 355 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTT-------------EEEEECTTTCSSHHHHHHHHHHTTEECEESGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeE-------------EEEEecCCCCCCHHHHHHHHHHCCeEEecccccC
Confidence 999999999999999999988 56665565554 5676664 33556666669999999999997
Q ss_pred CCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 321 ADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 321 ~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
. ++++|||++.+++++++++++|.+++.+
T Consensus 356 ~-~~~iRis~~~~~~~i~~~l~~l~~~l~~ 384 (385)
T 1b5p_A 356 A-FGHVRLSYATSEENLRKALERFARVLGR 384 (385)
T ss_dssp C-TTEEEEECCSCHHHHHHHHHHGGGGC--
T ss_pred C-CCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 5 7899999988999999999999887643
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=312.72 Aligned_cols=302 Identities=18% Similarity=0.201 Sum_probs=245.3
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCC------CCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCC
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSD------GRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYY 97 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~------~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~ 97 (360)
..|++..|+ ++||+++++++.. +|...++ +++|++|+|+++++..++..++++||+ |++++|+|
T Consensus 72 ~~Y~~~~G~-----~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~----Vlv~~p~y 142 (425)
T 2r2n_A 72 LQYSPSAGI-----PELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDN----VLLDEPAY 142 (425)
T ss_dssp TSCCCTTCC-----HHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCE----EEEESSCC
T ss_pred cCCCCCCCC-----HHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCE----EEEeCCCc
Confidence 469999998 9999999998754 4665533 368999999999999999999999998 99999999
Q ss_pred CCcHHHHHHhCCeeeeecCCcccccc-------C------------CCeeEEEE-cCCCCCCcccchH----HHHHHhhh
Q 018172 98 SQYPAETDYLRSGLYKWDGDANTFDK-------N------------NGAYIEVV-NSPNNPDGTIREA----VLAKVNRS 153 (360)
Q Consensus 98 ~~~~~~~~~~g~~~~~~~~~~~~~~~-------~------------~~~~~i~~-~~p~NPtG~~~~~----~~~~~~~~ 153 (360)
..+...++..|++++.++.+.++++. + +++++|++ ++||||||.+++. .+.++|++
T Consensus 143 ~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~ 222 (425)
T 2r2n_A 143 SGTLQSLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARK 222 (425)
T ss_dssp HHHHHHHGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999875444322 1 35788866 7999999999983 56678888
Q ss_pred cCcEEEEeecccCCC-----CCcCC--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHH
Q 018172 154 AEGKLIHDLAYYWPQ-----YTPIT--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQ 226 (360)
Q Consensus 154 ~~~~li~D~ay~~~~-----~~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 226 (360)
+|+++|+||+|.+.. ..++. +..+++++++||||.++ +|+|+||+++ ++++++.+.......+.+.|.+.|
T Consensus 223 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~-~~~l~~~l~~~~~~~~~~~~~~~q 300 (425)
T 2r2n_A 223 YDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTG-PKPLIERVILHIQVSTLHPSTFNQ 300 (425)
T ss_dssp TTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEE-EHHHHHHHHHHHHTTTCSSCHHHH
T ss_pred cCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEec-CHHHHHHHHHHHHHhcCCCCHHHH
Confidence 999999999998421 22222 34568899999999999 9999999999 789999999888777789999999
Q ss_pred HHHHHHhcccC-CCchhHHHHHHHHHHHHHHHHHHHHHhc-CCc-ccCCCCCcccccccccCCCCCCcccccCCch----
Q 018172 227 LRAAKILGIVS-DDYPNFFEYGRRLMSERWNMLRQVIRQS-GVF-GLPEYPLEYCNFTGKFTNSHPGFAWLESKED---- 299 (360)
Q Consensus 227 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 299 (360)
.++.++++... +.+..+++++++.++++++.+.+.|+++ +++ .+..|.+++ |+|+++++.
T Consensus 301 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~-------------~~~~~~~~~~~~~ 367 (425)
T 2r2n_A 301 LMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGM-------------FLWIKVKGINDVK 367 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSS-------------EEEEEETTCSCCH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceE-------------EEEEEeCCCCCHH
Confidence 99999887421 2234788999999999999999999884 444 334444443 788888642
Q ss_pred HHHHHHHHhhCeeeeCCCCCCCC----CCeEEEEec-CChHHHHHHHHHHHHHHhc
Q 018172 300 EDCEKLLRAERIMARGGRRFGAD----AKYARVSML-SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 300 ~~~~~~l~~~gI~~~pg~~f~~~----~~~~R~s~~-~~~e~~~~~~~~l~~~~~~ 350 (360)
+.+.+.|.++||.++||..|+.. .+++|||++ .+++++++++++|.+++++
T Consensus 368 ~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 368 ELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp HHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 34688888999999999999742 479999998 4999999999999998864
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=311.68 Aligned_cols=299 Identities=17% Similarity=0.162 Sum_probs=245.9
Q ss_pred ccccCCCCccccccHHHHHHHHHHH-hhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLH-HVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~-~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. ++||+++++++ ..+|.+ + +++|++|+|+++++..++..++++||+ |+++.|+|..+...
T Consensus 112 ~~Y~~~~g~-----~~lr~~ia~~~~~~~g~~-~-~~~v~~t~G~~~al~~~~~~l~~~Gd~----Vlv~~p~y~~~~~~ 180 (448)
T 3aow_A 112 LQYGTTKGF-----TPLRETLMKWLGKRYGIS-Q-DNDIMITSGSQQALDLIGRVFLNPGDI----VVVEAPTYLAALQA 180 (448)
T ss_dssp HSCCCTTCC-----HHHHHHHHHHHHHHHCCC-T-TSEEEEESSHHHHHHHHHHHHCCTTCE----EEEEESCCHHHHHH
T ss_pred hCCCCCCCc-----HHHHHHHHHHHHHhcCcC-C-hhhEEEeCcHHHHHHHHHHHHcCCCCE----EEEeCCChHHHHHH
Confidence 468888887 99999999998 455655 3 458999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcccccc-------C----C--CeeEE-EEcCCCCCCcccch----HHHHHHhhhcCcEEEEeeccc
Q 018172 104 TDYLRSGLYKWDGDANTFDK-------N----N--GAYIE-VVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYY 165 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~-------~----~--~~~~i-~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~ 165 (360)
++..|++++.++.+.++++. + + ++++| ++++|+||||.+++ +.+.++|+++|+++|+||+|.
T Consensus 181 ~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~ 260 (448)
T 3aow_A 181 FNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYG 260 (448)
T ss_dssp HHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCT
T ss_pred HHHcCCEEEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 99999999998875444322 2 3 78997 57899999999998 356778888999999999998
Q ss_pred CCCC-----CcCC--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCC
Q 018172 166 WPQY-----TPIT--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD 238 (360)
Q Consensus 166 ~~~~-----~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (360)
+..+ .++. +..++++++.||||.++ +|+|+||+++ ++++++.+.......+.+.|.+.|.++.++|+. .
T Consensus 261 ~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~-~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~--~ 336 (448)
T 3aow_A 261 ELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVG-DPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDG--G 336 (448)
T ss_dssp TCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEE-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHT--T
T ss_pred cccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEe-CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--C
Confidence 6322 2222 33468999999999999 9999999999 799999998877766778899999999998873 2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhc-C-CcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeee
Q 018172 239 DYPNFFEYGRRLMSERWNMLRQVIRQS-G-VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMA 313 (360)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~ 313 (360)
.++.++++.++.++++++++.+.|+++ + ++.+..|.+++ |+|+++++ ...+.+.|.++||.+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~-------------~~~v~~~~~~~~~~l~~~l~~~gV~v 403 (448)
T 3aow_A 337 YLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGM-------------FIWVTLPDGIDSKKMLERAIKKGVAY 403 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSS-------------EEEEECSTTCCHHHHHHHHHHTTEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccE-------------EEEEEcCCCCCHHHHHHHHHHCCcEE
Confidence 245889999999999999999999874 5 45555554444 78888874 356667777779999
Q ss_pred eCCCCCCC---CCCeEEEEecC-ChHHHHHHHHHHHHHHhch
Q 018172 314 RGGRRFGA---DAKYARVSMLS-REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 314 ~pg~~f~~---~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~ 351 (360)
+||..|+. .++++|+|++. ++|++++++++|.+++++.
T Consensus 404 ~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 404 VPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp EEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHHH
T ss_pred EcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 99998853 36799999977 7999999999999998764
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=313.61 Aligned_cols=310 Identities=35% Similarity=0.631 Sum_probs=247.8
Q ss_pred cccCCC-C---ccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh--------cCCCCCCCceEEEe
Q 018172 26 YLSDMG-N---VCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL--------SSPGGPEPISVVSA 93 (360)
Q Consensus 26 ~y~~~~-g---~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l--------~~~gd~~~~~vl~~ 93 (360)
.|++.. | . ++||++++++++..+....++++|++|+|+++++++++.+| +++||+ |+++
T Consensus 91 ~Y~~~~~G~~~~-----~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~----Vlv~ 161 (427)
T 2hox_A 91 SYFFNPVSNFIS-----FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESK----VVAH 161 (427)
T ss_dssp SSSCSSCCTTCC-----HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEE----EEEC
T ss_pred cCCCCCCCccch-----HHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCE----EEEe
Confidence 388777 8 7 99999999999866544334569999999999999999999 899998 9999
Q ss_pred CCCCCCcHHHHHHhCCeeeeecCCcccccc--CCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccCCCCCc
Q 018172 94 APYYSQYPAETDYLRSGLYKWDGDANTFDK--NNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTP 171 (360)
Q Consensus 94 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~~~~~~ 171 (360)
.|+|+.+...++..|++++.+.+|.+.++. ++++++|++++||||||.+++ . +++ ++..++|++|.++....
T Consensus 162 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~-~---~l~--~~~~i~d~~~~~~~~s~ 235 (427)
T 2hox_A 162 APFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-A---VIK--GCKSIYDMVYYWPHYTP 235 (427)
T ss_dssp SSCCHHHHHHHHHSCBTTEEEEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-C---SST--TCEEEEECTTCSTTTSC
T ss_pred CCCcccHHHHHHHcCCeeeeecCCHHHHHHhhcCCceEEEEcCCCCCcccccH-H---HHc--CCCEEEeecccCCCCCc
Confidence 999999999999999999988888777765 457899999999999999999 3 233 56789999887532221
Q ss_pred CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCC-------CchhHH
Q 018172 172 ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD-------DYPNFF 244 (360)
Q Consensus 172 ~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~ 244 (360)
..-..+++++++||||.+|++|+|+||++++++++++.+.+.+.....+++.+.|.++..+|+...+ .++.++
T Consensus 236 ~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~ 315 (427)
T 2hox_A 236 IKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLN 315 (427)
T ss_dssp CCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHH
T ss_pred cccCCCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHH
Confidence 1112678999999999999999999999985599999999988777788999999999888874211 234788
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccC--C-CCCcccccccccCCCCCCcccccCCch--HHHHHHHHhhCeeeeCCCCC
Q 018172 245 EYGRRLMSERWNMLRQVIRQSGVFGLP--E-YPLEYCNFTGKFTNSHPGFAWLESKED--EDCEKLLRAERIMARGGRRF 319 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~gI~~~pg~~f 319 (360)
++.++.++++++++.+.|++++++.+. . +.+. .+.....+..++|+|++++.. +.+..+++++||.++||..|
T Consensus 316 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~--~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f 393 (427)
T 2hox_A 316 TFGFKKLRERWVNITALLDQSDRFSYQELPQSEYC--NYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGF 393 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEE--TTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCcccccccccccc--ccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCCCcc
Confidence 899999999999999999998666542 1 2210 000112234566899999743 55666777899999999999
Q ss_pred CCCCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 320 GADAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 320 ~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
+..++++|+|++.++|++++++++|++++.+.+
T Consensus 394 ~~~~~~~Ris~~~~~e~l~~~l~~l~~~~~~~~ 426 (427)
T 2hox_A 394 EASSRYVRLSLIKTQDDFDQLMYYLKDMVKAKR 426 (427)
T ss_dssp TSCTTEEEEECSSCHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHHHHhhcc
Confidence 765789999998899999999999999987654
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=300.02 Aligned_cols=296 Identities=19% Similarity=0.234 Sum_probs=242.2
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhh-cCCC-CCCCCcEEEcCChHHHHHHHHHhhcCCC-----CCCCceEEEeCC
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHV-VDNA-VSDGRHIVIGTGSTQLYQAALYALSSPG-----GPEPISVVSAAP 95 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~-~~~~~~i~~t~G~t~~l~~~~~~l~~~g-----d~~~~~vl~~~p 95 (360)
....|++..|. +++|+++++++.. +|.+ ++++++|++|+|+++++..++..++++| |+ |+++.|
T Consensus 58 ~~~~y~~~~g~-----~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~----vl~~~p 128 (396)
T 3jtx_A 58 ELEKYPLTAGL-----PELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPA----IVSPNP 128 (396)
T ss_dssp GGGSCCCTTCC-----HHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCE----EEEEES
T ss_pred hccCCCCCCCc-----HHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCE----EEEcCC
Confidence 34568888887 9999999999753 3554 4443389999999999999999999986 56 999999
Q ss_pred CCCCcHHHHHHhCCeeeeecCCcccccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEee
Q 018172 96 YYSQYPAETDYLRSGLYKWDGDANTFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDL 162 (360)
Q Consensus 96 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ 162 (360)
+|..+...++..|.+++.++.+.+++.. ++++++|++++||||||.+++. .+.++|+++|+++|+||
T Consensus 129 ~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De 208 (396)
T 3jtx_A 129 FYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDE 208 (396)
T ss_dssp CCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEC
T ss_pred CcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 9999999999999999999876555432 2479999999999999999982 36678888999999999
Q ss_pred cccCCCCCc---CC---------CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHH
Q 018172 163 AYYWPQYTP---IT---------GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAA 230 (360)
Q Consensus 163 ay~~~~~~~---~~---------~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 230 (360)
+|.+..+.. .. ...++++++.|+||.|+++|+|+||+++ ++++++.+.......+.+.|.+.|.++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 287 (396)
T 3jtx_A 209 CYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAG-DAELLKNFLLYRTYHGSAMSIPVQRASI 287 (396)
T ss_dssp TTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEE-CHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred cccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEe-CHHHHHHHHHHHhhcccCCCHHHHHHHH
Confidence 999633221 11 1368899999999999999999999998 8999999998887777899999999999
Q ss_pred HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--h-HHHHHHHH
Q 018172 231 KILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--D-EDCEKLLR 307 (360)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~l~ 307 (360)
++++. . .++++.++.++++++.+.+.|+++ +.+..+.++ +|+|++++. . +.+..+++
T Consensus 288 ~~l~~---~--~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~ 347 (396)
T 3jtx_A 288 AAWDD---E--QHVIDNRRLYQEKFERVIPILQQV--FDVKLPDAS-------------FYIWLKVPDGDDLAFARNLWQ 347 (396)
T ss_dssp HHHHC---C--HHHHHHHHHHHHHHHHHHHHHTTT--SCCCCCSSS-------------SEEEEECTTSCHHHHHHHHHH
T ss_pred HHhCC---H--HHHHHHHHHHHHHHHHHHHHHHhc--CCccCCCee-------------EEEEEECCCCCHHHHHHHHHH
Confidence 98872 2 889999999999999999999876 233334333 378888874 3 44455557
Q ss_pred hhCeeeeCCCCCCC-------CCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 308 AERIMARGGRRFGA-------DAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 308 ~~gI~~~pg~~f~~-------~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
++||.+.||..|+. ..+++||+++.+++++++++++|.+++
T Consensus 348 ~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 348 KAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY 395 (396)
T ss_dssp HHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred HCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 78999999998864 357999999889999999999999875
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-39 Score=299.60 Aligned_cols=297 Identities=19% Similarity=0.224 Sum_probs=246.5
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. +++|++++++++. +|..+++ ++|++|+|+++++..++..++++||+ |++++|+|..+...
T Consensus 60 ~~y~~~~~~-----~~l~~~la~~~~~~~g~~~~~-~~v~~~~g~~~a~~~~~~~~~~~gd~----vl~~~p~~~~~~~~ 129 (370)
T 2z61_A 60 THYTDSRGI-----LELREKISELYKDKYKADIIP-DNIIITGGSSLGLFFALSSIIDDGDE----VLIQNPCYPCYKNF 129 (370)
T ss_dssp CSCCCTTCC-----HHHHHHHHHHHHHHSSCCCCG-GGEEEESSHHHHHHHHHHHHCCTTCE----EEEESSCCTHHHHH
T ss_pred cCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCh-hhEEECCChHHHHHHHHHHhcCCCCE----EEEeCCCchhHHHH
Confidence 457777776 9999999999875 5655655 58999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcccccc--CCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccCCCC----CcCC---C
Q 018172 104 TDYLRSGLYKWDGDANTFDK--NNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQY----TPIT---G 174 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~--~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~~~~----~~~~---~ 174 (360)
++..|.+++.+++|.+.+.. ++++++|++++||||||.+++..+.++|+++|+++|+||+|.+..+ .++. +
T Consensus 130 ~~~~g~~~~~v~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 209 (370)
T 2z61_A 130 IRFLGAKPVFCDFTVESLEEALSDKTKAIIINSPSNPLGEVIDREIYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDE 209 (370)
T ss_dssp HHHTTCEEEEECSSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHHHHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCT
T ss_pred HHHcCCEEEEeCCCHHHHHHhcccCceEEEEcCCCCCcCcccCHHHHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccC
Confidence 99999999999866665543 4578999999999999999984488899999999999999986432 1222 2
Q ss_pred CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHH
Q 018172 175 AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSER 254 (360)
Q Consensus 175 ~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 254 (360)
..++++++.|+||.++++|+|+||+++ ++++++.+.......+.+.|.+.|.++.++++.+ . +.++++.++.++++
T Consensus 210 ~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~--~~~~~~~~~~~~~~ 285 (370)
T 2z61_A 210 NLEKTILINGFSKLYAMTGWRIGYVIS-NDEIIEAILKLQQNLFISAPTISQYAALKAFEKE-T--EREINSMIKEFDRR 285 (370)
T ss_dssp TCSSEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHH-H--HHHHHHHHHHHHHH
T ss_pred CCCcEEEEecChhccCCccceEEEEEE-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhcc-C--HHHHHHHHHHHHHH
Confidence 457899999999999999999999999 7899999988877677789999999888877631 1 37889999999999
Q ss_pred HHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-chHHHHHHHH-hhCeeeeCCCCCCC-CCCeEEEEec
Q 018172 255 WNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-EDEDCEKLLR-AERIMARGGRRFGA-DAKYARVSML 331 (360)
Q Consensus 255 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~-~~gI~~~pg~~f~~-~~~~~R~s~~ 331 (360)
++++.+.|+++ ++.+..+.+++ |+|++++ +...+.+.|. ++||.++||..|+. .++++|++++
T Consensus 286 ~~~l~~~L~~~-g~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~ 351 (370)
T 2z61_A 286 RRLVLKYVKDF-GWEVNNPIGAY-------------YVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA 351 (370)
T ss_dssp HHHHHHHHHHT-TCBCCCCCBTT-------------EECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC
T ss_pred HHHHHHHHHHc-CCeecCCCcce-------------EEEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe
Confidence 99999999988 55554444333 6788876 4455666665 78999999998874 4679999998
Q ss_pred CChHHHHHHHHHHHHHHh
Q 018172 332 SREEIFNIFLERLSAIQG 349 (360)
Q Consensus 332 ~~~e~~~~~~~~l~~~~~ 349 (360)
.++|++++++++|.++++
T Consensus 352 ~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 352 NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp SCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 899999999999999875
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-39 Score=310.79 Aligned_cols=310 Identities=16% Similarity=0.184 Sum_probs=242.5
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhc--CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVV--DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~--~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~ 101 (360)
...|+++.|. +++|++++++++.+ |.++++ ++|++|+|+++++..++..+.++||.++..|+++.|+|+.+.
T Consensus 122 ~~~Y~~~~G~-----~~lr~~ia~~~~~~~gG~~~~~-~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~ 195 (498)
T 3ihj_A 122 LGSYSASQGV-----NCIREDVAAYITRRDGGVPADP-DNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYS 195 (498)
T ss_dssp ------CCSC-----HHHHHHHHHHHHHHTTTCCCCG-GGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHH
T ss_pred CCCCCCCCCH-----HHHHHHHHHHHHHhcCCCCCCc-ccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHH
Confidence 3569999998 99999999998755 577765 589999999999999999999988611223999999999999
Q ss_pred HHHHHhCCeeeeecCCcc---cccc-------CC-----CeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEee
Q 018172 102 AETDYLRSGLYKWDGDAN---TFDK-------NN-----GAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDL 162 (360)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~---~~~~-------~~-----~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ 162 (360)
..++..|++++.++.+.+ +++. ++ ++++|++++||||||.+++. .+.++|+++++++|+||
T Consensus 196 ~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De 275 (498)
T 3ihj_A 196 AVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADE 275 (498)
T ss_dssp HHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEc
Confidence 999999999999987754 2222 11 58999999999999999983 46678888999999999
Q ss_pred cccCCCC------CcCCC----------CCCccEEEecccccc-CCCCceEEEEee--cCHHHHHHHHHHHhhccccCCh
Q 018172 163 AYYWPQY------TPITG----------AADHDIMLFTLSKCT-GHAGSRIGWALV--KDTEVARKMTRFIELGSIGVSK 223 (360)
Q Consensus 163 ay~~~~~------~~~~~----------~~~~~i~~~S~sK~~-~~~G~r~G~~~~--~~~~~~~~l~~~~~~~~~~~~~ 223 (360)
+|.+..+ .++.. ...++++++||||.| |++|+|+||++. .++++++.+..... ...+.+.
T Consensus 276 ~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~-~~~~~~~ 354 (498)
T 3ihj_A 276 VYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLS-VRLCPPV 354 (498)
T ss_dssp TTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHH-HSCCCCH
T ss_pred CccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHh-ccCCCCH
Confidence 9985322 12211 123468999999999 899999999983 38999999988765 5678899
Q ss_pred HHHHHHHHHhcccC---CCch---hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC
Q 018172 224 ESQLRAAKILGIVS---DDYP---NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297 (360)
Q Consensus 224 ~~~~~~~~~l~~~~---~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
+.|.++..+++... ..++ .+.+++++.++++++++.+.|++++++.+..|.+++ |+|+++.
T Consensus 355 ~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~-------------~~~~~l~ 421 (498)
T 3ihj_A 355 SGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAM-------------YAFPRIF 421 (498)
T ss_dssp HHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSS-------------EECCEEC
T ss_pred HHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEE-------------EEEEecc
Confidence 99999888886321 1222 345677899999999999999999888888787776 5554432
Q ss_pred ---------------chHH-HHHHHHhhCeeeeCCCCCCC--CCCeEEEEecCChHHHHHHHHHHHHHHhchhc
Q 018172 298 ---------------EDED-CEKLLRAERIMARGGRRFGA--DAKYARVSMLSREEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 298 ---------------~~~~-~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~~ 353 (360)
+.+. +.++|+++||.++||+.|+. .++++|++++.+++++++++++|.+++.+.++
T Consensus 422 ~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 422 IPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp CCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1122 67889999999999999984 45699999977999999999999999987654
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-39 Score=303.79 Aligned_cols=300 Identities=15% Similarity=0.196 Sum_probs=244.5
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
+.|.+..|. +++|++++++++..+.++.+ ++|++|+|+++++..++..+.++||+ |+++.|+|..+...+
T Consensus 90 ~~y~~~~g~-----~~lr~~la~~~~~~~~~~~~-~~v~~t~g~t~al~~~~~~l~~~gd~----vl~~~p~~~~~~~~~ 159 (427)
T 3dyd_A 90 NGYAPSIGF-----LSSREEIASYYHCPEAPLEA-KDVILTSGCSQAIDLCLAVLANPGQN----ILVPRPGFSLYKTLA 159 (427)
T ss_dssp SSCCCTTCC-----HHHHHHHHHHHCBTTBCCCG-GGEEEESSHHHHHHHHHHHHCCTTCE----EEEEESCCTHHHHHH
T ss_pred CCCCCCCCc-----HHHHHHHHHHHhhcCCCCCh-HHEEEecCcHHHHHHHHHHhcCCCCE----EEEcCCCchhHHHHH
Confidence 468777887 99999999999866665555 58999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCCc--------ccccc--CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC--
Q 018172 105 DYLRSGLYKWDGDA--------NTFDK--NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ-- 168 (360)
Q Consensus 105 ~~~g~~~~~~~~~~--------~~~~~--~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~-- 168 (360)
+..|.+++.++.+. +.+.. +++++++++++||||||.+++ +.+.++|+++|+++|+|++|.+..
T Consensus 160 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~ 239 (427)
T 3dyd_A 160 ESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFS 239 (427)
T ss_dssp HHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCS
T ss_pred HHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccC
Confidence 99999999887643 22222 357899999999999999998 356678888999999999998532
Q ss_pred ---CCcCC--CCCCccEEEeccccccCCCCceEEEEeecC------HHHHHHHHHHHhhccccCChHHHHHHHHHhcccC
Q 018172 169 ---YTPIT--GAADHDIMLFTLSKCTGHAGSRIGWALVKD------TEVARKMTRFIELGSIGVSKESQLRAAKILGIVS 237 (360)
Q Consensus 169 ---~~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (360)
..++. +...++++++||||.|+++|+|+||+++++ +++++.+...... .++.+.+.|.++.++++...
T Consensus 240 g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~ 318 (427)
T 3dyd_A 240 DCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRTP 318 (427)
T ss_dssp SCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSC
T ss_pred CCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcC
Confidence 11221 234457889999999999999999999854 5788888776543 57899999999999887422
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--------ch-HHHHHHHHh
Q 018172 238 DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------ED-EDCEKLLRA 308 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~l~~ 308 (360)
..++++.+++++++++++.+.|++++++....|.+++ |+|+.++ +. +.+..++++
T Consensus 319 ---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~-------------~~~~~l~~~~~~~~~~~~~~~~~l~~~ 382 (427)
T 3dyd_A 319 ---GEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAM-------------YLMVGIEMEHFPEFENDVEFTERLVAE 382 (427)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTT-------------EEEEEECGGGCTTCSSHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeE-------------EEEEecCHhhcCCCCCHHHHHHHHHHH
Confidence 3788999999999999999999998777665566554 6666554 22 445556678
Q ss_pred hCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 309 ERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 309 ~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
+||.++||..|+. ++++|++++.+++++++++++|.+++++.+
T Consensus 383 ~gV~v~~g~~~~~-~~~iRis~~~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 383 QSVHCLPATCFEY-PNFIRVVITVPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp HCEECEEGGGGTC-TTEEEEESCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEECCcccCC-CCeEEEEECCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999985 789999998899999999999999997654
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=296.73 Aligned_cols=295 Identities=17% Similarity=0.219 Sum_probs=243.8
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCC--CCCCCceEEEeCCCCCC
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSP--GGPEPISVVSAAPYYSQ 99 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~--gd~~~~~vl~~~p~~~~ 99 (360)
....|++..|. +++|+++++++.. +|.++.+ ++|++|+|+++++..++..++++ ||+ |+++.|+|..
T Consensus 51 ~~~~y~~~~g~-----~~lr~~la~~l~~~~g~~~~~-~~i~~t~g~~~al~~~~~~~~~~~~gd~----vl~~~p~~~~ 120 (376)
T 3ezs_A 51 SLNIYPKSAFE-----ESLRAAQRGFFKRRFKIELKE-NELISTLGSREVLFNFPSFVLFDYQNPT----IAYPNPFYQI 120 (376)
T ss_dssp GGGSCCCTTCC-----HHHHHHHHHHHHHHHSCCCCG-GGEEEESSSHHHHHHHHHHHTTTCSSCE----EEEEESCCTH
T ss_pred hcCCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCH-HHEEECcCcHHHHHHHHHHHcCCCCCCE----EEEecCCcHh
Confidence 34668888887 9999999999753 3555555 58999999999999999999999 898 9999999999
Q ss_pred cHHHHHHhCCeeeeecCCcc-cccc------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC
Q 018172 100 YPAETDYLRSGLYKWDGDAN-TFDK------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 100 ~~~~~~~~g~~~~~~~~~~~-~~~~------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
+...++..|.+++.++.+.+ ++.. .+++++|++++||||||.+++. .+.++|+++|+++|+||+|.+..
T Consensus 121 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 200 (376)
T 3ezs_A 121 YEGAAKFIKAKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIY 200 (376)
T ss_dssp HHHHHHHTTCEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred HHHHHHHcCCEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhc
Confidence 99999999999999998765 3322 2478999999999999999982 45567888999999999999632
Q ss_pred CC----cCCC--------CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhccc
Q 018172 169 YT----PITG--------AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 169 ~~----~~~~--------~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
+. +... ..++++++.|+||.+|++|+|+||+++ ++++++.+.......+++.|.+.|.++.++++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~- 278 (376)
T 3ezs_A 201 ENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAG-DSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD- 278 (376)
T ss_dssp SSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEE-CHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEee-CHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC-
Confidence 21 1111 578899999999999999999999998 899999999888777888999999999998873
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHh-hCeeeeC
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRA-ERIMARG 315 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gI~~~p 315 (360)
. .++++.++.++++++.+.+.|+ ++. .+.+ ++|+|+++++...+.+.|.+ +||.++|
T Consensus 279 --~--~~~~~~~~~~~~~~~~l~~~l~---~~~--~~~~-------------~~~~~~~~~~~~~~~~~l~~~~gi~v~~ 336 (376)
T 3ezs_A 279 --D--RHAEFFRNIYANNLKLARKIFK---NTL--IYPY-------------SFYVYLPVQNGENFAKTLYQNEGIITLP 336 (376)
T ss_dssp --S--HHHHHHHHHHHHHHHHHHHHST---TCC--CCSB-------------SSEEEEECSCHHHHHHHHHHHHCCBCEE
T ss_pred --c--HHHHHHHHHHHHHHHHHHHHhc---CCC--CCCc-------------ceEEEEECCCHHHHHHHHHHhCCEEEeC
Confidence 2 7799999999999999999987 222 2333 34788888765555555555 8999999
Q ss_pred CCCCCC---CCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 316 GRRFGA---DAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 316 g~~f~~---~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
|..|+. .++++|++++.++|++++++++|.+++++.
T Consensus 337 g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~~ 375 (376)
T 3ezs_A 337 ALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRENH 375 (376)
T ss_dssp GGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHCC-
T ss_pred cHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 999972 578999999779999999999999998764
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-39 Score=300.61 Aligned_cols=299 Identities=18% Similarity=0.189 Sum_probs=240.8
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. +++|++++++++. +|.++.+ ++|++|+|++++++.++..++++||+ |+++.|+|..+...
T Consensus 62 ~~y~~~~g~-----~~lr~~ia~~~~~~~g~~~~~-~~v~~t~g~~~al~~~~~~l~~~gd~----vl~~~p~~~~~~~~ 131 (391)
T 3h14_A 62 LGYTVALGL-----PALRQRIARLYGEWYGVDLDP-GRVVITPGSSGGFLLAFTALFDSGDR----VGIGAPGYPSYRQI 131 (391)
T ss_dssp -------CC-----HHHHHHHHHHHHHHHCCCCCG-GGEEEESSHHHHHHHHHHHHCCTTCE----EEEEESCCHHHHHH
T ss_pred CCCCCCCCh-----HHHHHHHHHHHHHHhCCCCCH-HHEEEecChHHHHHHHHHHhcCCCCE----EEEcCCCCccHHHH
Confidence 468877777 9999999999863 4555555 58999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCccc-ccc------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC----
Q 018172 104 TDYLRSGLYKWDGDANT-FDK------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ---- 168 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~-~~~------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~---- 168 (360)
++..|++++.++.+.++ +.. ..++++|++++||||||.+++ +.+.++|+++|+++|+|++|.+..
T Consensus 132 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~ 211 (391)
T 3h14_A 132 LRALGLVPVDLPTAPENRLQPVPADFAGLDLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAK 211 (391)
T ss_dssp HHHTTCEEEEEECCGGGTTSCCHHHHTTSCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC
T ss_pred HHHcCCEEEEeecCcccCCCCCHHHHHhcCCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCC
Confidence 99999999999887542 211 117899999999999999998 355678888999999999998532
Q ss_pred CCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHH
Q 018172 169 YTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGR 248 (360)
Q Consensus 169 ~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (360)
..+.....+++++++|+||.+|++|+|+||+++ ++++++.+.......+.+.+.+.|.++.++++ . ..++++.+
T Consensus 212 ~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~--~~~~~~~~ 285 (391)
T 3h14_A 212 AVTALELTDECYVINSFSKYFSMTGWRVGWMVV-PEDQVRVVERIAQNMFICAPHASQVAALAALD---C--DAELQANL 285 (391)
T ss_dssp CCCGGGTCSSSEEEEESSSTTCCTTSCCEEEEC-CGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTT---C--HHHHHHHH
T ss_pred CcChhhcCCCEEEEEechhccCCccceeEEEEe-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHhC---C--hHHHHHHH
Confidence 222333467899999999999999999999998 88899999888887888999999999988786 2 38899999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHH-HHhhCeeeeCCCCCCC--
Q 018172 249 RLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKL-LRAERIMARGGRRFGA-- 321 (360)
Q Consensus 249 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-l~~~gI~~~pg~~f~~-- 321 (360)
++++++++.+.+.|++++......+.+++ |+|++++. ...+.+. ++++||.++||..|+.
T Consensus 286 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~ 352 (391)
T 3h14_A 286 DVYKANRKLMLERLPKAGFTRIAPPDGAF-------------YVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPER 352 (391)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCBCCCCBTT-------------EEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTT
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCeeE-------------EEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCC
Confidence 99999999999999998654444454443 67776653 2445444 5556999999999975
Q ss_pred CCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 322 DAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 322 ~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
.++++|+|++.++|++++++++|.+++.+..
T Consensus 353 ~~~~iRis~~~~~~~i~~~l~~l~~~~~~~~ 383 (391)
T 3h14_A 353 GAGTLRFSYARATADIEEGLDRLEAFMQARG 383 (391)
T ss_dssp GGGEEEEECCSCHHHHHHHHHHHHHHHHHC-
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 3679999998899999999999999998754
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-39 Score=304.00 Aligned_cols=299 Identities=15% Similarity=0.148 Sum_probs=243.7
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH--HHHHHhhcC--C----------CCCCCc
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLY--QAALYALSS--P----------GGPEPI 88 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l--~~~~~~l~~--~----------gd~~~~ 88 (360)
....|++..|. ++||++++++++. ++++|++|+|+++++ ++++..+++ + ||+
T Consensus 70 ~~~~Y~~~~g~-----~~lr~~ia~~~~~------~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~--- 135 (427)
T 3ppl_A 70 DVRNYGGLDGI-----VDIRQIWADLLGV------PVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVK--- 135 (427)
T ss_dssp BTTSSCCSSCC-----HHHHHHHHHHHTS------CGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCE---
T ss_pred hhcCCCCCCCc-----HHHHHHHHHHhCC------CcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCE---
Confidence 45679988888 9999999999975 556999999999999 578888876 6 787
Q ss_pred eEEEeCCCCCCcHHHHHHhCCeeeeecCCcccccc--------CCCeeEEEEc-CCCCCCcccchH----HHHHHh-hhc
Q 018172 89 SVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFDK--------NNGAYIEVVN-SPNNPDGTIREA----VLAKVN-RSA 154 (360)
Q Consensus 89 ~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------~~~~~~i~~~-~p~NPtG~~~~~----~~~~~~-~~~ 154 (360)
|+++.|+|..+...++..|++++.++.+.++++. ++++++|+++ +||||||.+++. .+.++| +++
T Consensus 136 -V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~ 214 (427)
T 3ppl_A 136 -WICPVPGYDRHFSITERFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAP 214 (427)
T ss_dssp -EEEEESCCHHHHHHHHHTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST
T ss_pred -EEEcCCCcHHHHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999877655433 3678998765 899999999983 566777 889
Q ss_pred CcEEEEeecccCCCCC-------cCC------CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccC
Q 018172 155 EGKLIHDLAYYWPQYT-------PIT------GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGV 221 (360)
Q Consensus 155 ~~~li~D~ay~~~~~~-------~~~------~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~ 221 (360)
|+++|+||+|.+..+. +.. +..+++++++||||+ +++|+|+||+++ ++++++.+.......+.+.
T Consensus 215 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G~r~G~~~~-~~~l~~~~~~~~~~~~~~~ 292 (427)
T 3ppl_A 215 DFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLAGAGVSFFLT-SAENRKWYTGHAGIRGIGP 292 (427)
T ss_dssp TCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT-SCTTSSCEEEEC-CHHHHHHHHHHHHHHCSCC
T ss_pred CCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc-cCcCccEEEEEc-CHHHHHHHHHHhhcccCCC
Confidence 9999999999852211 111 356889999999998 669999999999 8999999998887778899
Q ss_pred ChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc----CCcccCCCCCcccccccccCCCCCCcccccCC
Q 018172 222 SKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297 (360)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
+.+.|.++.++++.. ..++.++++.++.++++++.+.+.|.+. +++.+..|.++ +|+|++++
T Consensus 293 ~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g-------------~~~~~~~~ 358 (427)
T 3ppl_A 293 NKVNQLAHARYFGDA-EGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGG-------------YFISLDVV 358 (427)
T ss_dssp CHHHHHHHHHHHCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBS-------------SCEEEECS
T ss_pred CHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCcc-------------EEEEEECC
Confidence 999999999988731 2234788899999999999999988653 23444445444 48899887
Q ss_pred c--hHHHHHHHHhhCeeeeC-CCCCC----CCCCeEEEEecC-ChHHHHHHHHHHHHHHhchh
Q 018172 298 E--DEDCEKLLRAERIMARG-GRRFG----ADAKYARVSMLS-REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 298 ~--~~~~~~~l~~~gI~~~p-g~~f~----~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~~ 352 (360)
+ .+.+.+.|.++||.++| |..|+ ..++++|||++. +++++++++++|.+++.+..
T Consensus 359 ~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 359 PGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp TTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5 36778889999999999 66664 247899999987 89999999999999997653
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=299.86 Aligned_cols=298 Identities=18% Similarity=0.277 Sum_probs=242.7
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. +++|+++++++.. +|.+++++++|++|+|+++++..++..++++||+ |+++.|+|..+...
T Consensus 79 ~~y~~~~g~-----~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~----Vl~~~p~y~~~~~~ 149 (404)
T 2o1b_A 79 QKYGAFHGK-----EAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDY----VLLPDPGYTDYLAG 149 (404)
T ss_dssp HSCCCTTCC-----HHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCE----EEEEESCCSSHHHH
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCE----EEEcCCCchhHHHH
Confidence 357776777 9999999999843 3555554358999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcccccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC-
Q 018172 104 TDYLRSGLYKWDGDANTFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY- 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~- 169 (360)
++..|.+++.++.+.+++.. ++++++|++++||||||.+++ +.+.++|+++|+++|+||+|.+..+
T Consensus 150 ~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~ 229 (404)
T 2o1b_A 150 VLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFD 229 (404)
T ss_dssp HHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSS
T ss_pred HHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccC
Confidence 99999999998876544321 246899999999999999997 3566788889999999999986322
Q ss_pred ---CcCCC---CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 170 ---TPITG---AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 170 ---~~~~~---~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
.++.. ..++++++.|+||.+|++|+|+||+++ ++++++.+.......+.+.+.+.|.++.++++.. +.+
T Consensus 230 g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~ 304 (404)
T 2o1b_A 230 AKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG-NKDMIQALKKYQTHTNAGMFGALQDAAIYALNHY----DDF 304 (404)
T ss_dssp SCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC----HHH
T ss_pred CCCCChhhcCCCCCCEEEEEecchhccCchhheEeEec-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC----HHH
Confidence 12222 235789999999999999999999998 8999999988877677889999999999888742 378
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHH-HHhhCeeeeCCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKL-LRAERIMARGGRRF 319 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-l~~~gI~~~pg~~f 319 (360)
+++.++.++++++++.+.|+++ ++.+..+.+++ |+|+++++. ..+.+. ++++||.++||..|
T Consensus 305 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~-------------~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f 370 (404)
T 2o1b_A 305 LEEQSNVFKTRRDRFEAMLAKA-DLPFVHAKGGI-------------YVWLETPPGYDSEQFEQFLVQEKSILVAPGKPF 370 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCEECCCBSS-------------EEEEECCTTCCHHHHHHHHHHHHCEECEESGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCeecCCCcce-------------EEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhh
Confidence 9999999999999999999988 45544444333 678887642 444444 55789999999988
Q ss_pred CC-CCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 320 GA-DAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 320 ~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
+. .++++||+++.++|++++++++|.+++++
T Consensus 371 ~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 371 GENGNRYVRISLALDDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp CGGGTTEEEEECCSCTTHHHHHHHHHHGGGGG
T ss_pred CcCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 64 36799999988889999999999998865
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=302.24 Aligned_cols=303 Identities=16% Similarity=0.215 Sum_probs=247.0
Q ss_pred cccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|++..|. +++|++++++++ .+|.+++++++|++|+|+++++..++..++++||+ |+++.|+|..+..
T Consensus 60 ~~~y~~~~g~-----~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~----vl~~~p~~~~~~~ 130 (422)
T 3fvs_A 60 LNQYTKTFGY-----PPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDE----VIIIEPFFDCYEP 130 (422)
T ss_dssp GGSCCCTTCC-----HHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCTTHHH
T ss_pred cCCCCCCCCC-----HHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCE----EEEcCCCchhhHH
Confidence 3568888887 999999999987 45665655358999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCc----cc---------ccc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEE
Q 018172 103 ETDYLRSGLYKWDGDA----NT---------FDK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKL 158 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~----~~---------~~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~l 158 (360)
.++..|.+++.++.+. ++ ++. ++++++|++++||||||.+++ +.+.++|+++|+++
T Consensus 131 ~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~l 210 (422)
T 3fvs_A 131 MTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVC 210 (422)
T ss_dssp HHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEE
Confidence 9999999999888764 22 111 357999999999999999996 45667888899999
Q ss_pred EEeecccCCC-----CCcC---CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHH
Q 018172 159 IHDLAYYWPQ-----YTPI---TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAA 230 (360)
Q Consensus 159 i~D~ay~~~~-----~~~~---~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 230 (360)
|+||+|.+.. ..++ ....++++++.|+||.+|++|+|+||+++ ++++++.+........++.+.+.|.++.
T Consensus 211 i~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 289 (422)
T 3fvs_A 211 ITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLG-PDHIMKHLRTVHQNSVFHCPTQSQAAVA 289 (422)
T ss_dssp EEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred EEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEe-CHHHHHHHHHHHhhccCCCCcHHHHHHH
Confidence 9999998521 1122 22347789999999999999999999998 8999999988877778889999999999
Q ss_pred HHhccc---CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---------
Q 018172 231 KILGIV---SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--------- 298 (360)
Q Consensus 231 ~~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 298 (360)
++++.. ......++++.++.++++++++.+.|+++ ++.+..|.+++ |+|++++.
T Consensus 290 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 355 (422)
T 3fvs_A 290 ESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSY-------------FLITDISDFKRKMPDLP 355 (422)
T ss_dssp HHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSS-------------EEEEECHHHHHHCCCCC
T ss_pred HHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeee-------------EEEEechhhcccccccc
Confidence 988630 01123889999999999999999999998 45555555544 67776643
Q ss_pred -------h-HHHHHHHHhhCeeeeCCCCCCC------CCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 299 -------D-EDCEKLLRAERIMARGGRRFGA------DAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 299 -------~-~~~~~~l~~~gI~~~pg~~f~~------~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
. +.+..+++++||.+.||+.|+. ..+++|||++.++|++++++++|++++++
T Consensus 356 ~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 356 GAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp CCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred cccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 2 4455567788999999998852 46899999988999999999999998864
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=294.78 Aligned_cols=284 Identities=19% Similarity=0.206 Sum_probs=228.7
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCC-CCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPG-GPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~g-d~~~~~vl~~~p~~~~~~~~ 103 (360)
++|+++. . ++||++++++++. ++++|++|+|++++++.++..++++| |+ |+++.|+|..+...
T Consensus 53 ~~Y~~~~-~-----~~lr~~la~~~~~------~~~~v~~~~G~~~ai~~~~~~~~~~g~d~----Vl~~~p~~~~~~~~ 116 (356)
T 1fg7_A 53 NRYPECQ-P-----KAVIENYAQYAGV------KPEQVLVSRGADEGIELLIRAFCEPGKDA----ILYCPPTYGMYSVS 116 (356)
T ss_dssp TSCCCSS-C-----HHHHHHHHHHHTS------CGGGEEEESHHHHHHHHHHHHHCCTTTCE----EEECSSSCTHHHHH
T ss_pred ccCCCcc-H-----HHHHHHHHHHhCC------ChHHEEEcCCHHHHHHHHHHHHhCCCCCE----EEEeCCChHHHHHH
Confidence 4566543 4 9999999999975 45699999999999999999999999 88 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc-------CCCeeEEEEcCCCCCCcccch-HH---HHHHhhhcCcEEEEeecccCCC---
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK-------NNGAYIEVVNSPNNPDGTIRE-AV---LAKVNRSAEGKLIHDLAYYWPQ--- 168 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~-------~~~~~~i~~~~p~NPtG~~~~-~~---~~~~~~~~~~~li~D~ay~~~~--- 168 (360)
++..|++++.++.+.+ .++. + ++++|++++||||||.+++ +. +.++|+ +|+++|+||+|.+..
T Consensus 117 ~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~ 194 (356)
T 1fg7_A 117 AETIGVECRTVPTLDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQA 194 (356)
T ss_dssp HHHHTCEEEECCCCTTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGG
T ss_pred HHHcCCEEEEeeCCCCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCC
Confidence 9999999998886532 1211 3 7899999999999999998 33 345566 899999999998533
Q ss_pred -CCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 169 -YTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 169 -~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
...+....++++++.|+||.||++|+|+||+++ ++++++.+..... .++.|.+.|.++.++++. ..+ .++++.
T Consensus 195 ~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~--~~~~~~~~~~a~~~~l~~--~~~-~~~~~~ 268 (356)
T 1fg7_A 195 SLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLA-NEEVINLLMKVIA--PYPLSTPVADIAAQALSP--QGI-VAMRER 268 (356)
T ss_dssp CSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEE-CHHHHHHHHHHSC--SSCSCHHHHHHHHHHTSH--HHH-HHHHHH
T ss_pred cHHHHHhhCCCEEEEecchHhhcCchhhhEEEEe-CHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcC--ccH-HHHHHH
Confidence 122234567899999999999999999999999 8999999987654 447899999999888872 111 238899
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeC-CCCCCCCCCeE
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARG-GRRFGADAKYA 326 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~p-g~~f~~~~~~~ 326 (360)
++.++++++++.+.|++++++....+ +.++|+|+++++...+.+.|.++||.++| |..|+. ++++
T Consensus 269 ~~~~~~~~~~l~~~L~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~g~~~~~-~~~i 334 (356)
T 1fg7_A 269 VAQIIAEREYLIAALKEIPCVEQVFD-------------SETNYILARFKASSAVFKSLWDQGIILRDQNKQPSL-SGCL 334 (356)
T ss_dssp HHHHHHHHHHHHHHHHHSTTEEEECC-------------CSSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTC-TTEE
T ss_pred HHHHHHHHHHHHHHHHhCCCceEECC-------------CCCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCC-CCeE
Confidence 99999999999999998864322222 33458888887556677777899999999 888875 5699
Q ss_pred EEEecCChHHHHHHHHHHHHH
Q 018172 327 RVSMLSREEIFNIFLERLSAI 347 (360)
Q Consensus 327 R~s~~~~~e~~~~~~~~l~~~ 347 (360)
|+|++ +++++++++++|+++
T Consensus 335 Ris~~-~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 335 RITVG-TREESQRVIDALRAE 354 (356)
T ss_dssp EEECC-CHHHHHHHHHHHHTC
T ss_pred EEEeC-CHHHHHHHHHHHHhh
Confidence 99995 688999999998764
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=299.03 Aligned_cols=300 Identities=18% Similarity=0.222 Sum_probs=241.4
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. +++|+++++++.. +|.+++++++|++|+|+++++..++..++++||+ |+++.|+|..+...
T Consensus 69 ~~y~~~~g~-----~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~----Vl~~~p~~~~~~~~ 139 (412)
T 2x5d_A 69 HGYSTSRGI-----PRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDT----ILVPNPSYPIHIYG 139 (412)
T ss_dssp ----CTTCC-----HHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCE----EEEEESCCHHHHHH
T ss_pred CCCCCCCCc-----HHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCE----EEEcCCCchhHHHH
Confidence 357767776 9999999999853 3555554358999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC
Q 018172 104 TDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
++..|.+++.++.+.+ ++.. ++++++|++++||||||.+++ +.+.++|+++|+++|+|++|.+..+
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~ 219 (412)
T 2x5d_A 140 AVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVY 219 (412)
T ss_dssp HHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred HHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence 9999999999987754 4311 357899999999999999988 3566788889999999999986432
Q ss_pred -----CcCCC---CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCch
Q 018172 170 -----TPITG---AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 170 -----~~~~~---~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
.++.. ..++++++.|+||.+|++|+|+||+++ ++++++.+.......+++.+.+.|.++.++++.. .
T Consensus 220 ~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~-- 294 (412)
T 2x5d_A 220 DGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVG-NPELVSALARIKSYHDYGTFTPLQVAAIAALEGD--Q-- 294 (412)
T ss_dssp TTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSC--S--
T ss_pred CCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEc-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCC--H--
Confidence 22222 246789999999999999999999999 8999999988777677889999999999988732 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC------chHHHHHHH-HhhCeeee
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK------EDEDCEKLL-RAERIMAR 314 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l-~~~gI~~~ 314 (360)
.++++.++.++++++++.+.|+++ ++.+..+.+++ |+|++++ +...+.+.| +++||.++
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~ 360 (412)
T 2x5d_A 295 QCVRDIARQYQQRRDVLVKGLREA-GWMVENPKASM-------------YVWAKIPEPYAHLGSLEFAKKLLQDAKVSVS 360 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCSBSS-------------EEEEECCTTTGGGCHHHHHHHHHHHHCEECE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCeee-------------EEEEEcCCccCCCCHHHHHHHHHHHCCEEEe
Confidence 789999999999999999999988 45554444333 6777775 234455555 56799999
Q ss_pred CCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 315 GGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 315 pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
||..|+. .++++|++++.+++++++++++|.+++++.+
T Consensus 361 ~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 361 PGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMFRADG 399 (412)
T ss_dssp EGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHTT
T ss_pred CchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence 9998864 4679999998899999999999999997644
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=302.99 Aligned_cols=300 Identities=14% Similarity=0.134 Sum_probs=238.8
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH--HHHHHhhcCC---C-------CCCCceEE
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLY--QAALYALSSP---G-------GPEPISVV 91 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l--~~~~~~l~~~---g-------d~~~~~vl 91 (360)
...|+++.|. ++||++++++++. ++++|++|+|+++++ .+++..+.++ | |. .+|+
T Consensus 69 ~~~Y~~~~G~-----~~lr~~ia~~~~~------~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~--~~Vl 135 (422)
T 3d6k_A 69 CRNYGGLLGI-----ADIRELWAEALGL------PADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEK--VKWL 135 (422)
T ss_dssp TTSSCCSSCC-----HHHHHHHHHHHTC------CGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSC--CEEE
T ss_pred hhCCCCCCCC-----HHHHHHHHHHhCC------ChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCC--CEEE
Confidence 4579998888 9999999999975 556999999999997 6777777655 3 21 1399
Q ss_pred EeCCCCCCcHHHHHHhCCeeeeecCCcccccc-------C-CCeeEEE-EcCCCCCCcccchH----HHHHHhh-hcCcE
Q 018172 92 SAAPYYSQYPAETDYLRSGLYKWDGDANTFDK-------N-NGAYIEV-VNSPNNPDGTIREA----VLAKVNR-SAEGK 157 (360)
Q Consensus 92 ~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~-~~~~~i~-~~~p~NPtG~~~~~----~~~~~~~-~~~~~ 157 (360)
++.|+|..+...++..|++++.++.+.++++. + .++++|+ +++||||||.+++. .+.++|+ ++|++
T Consensus 136 ~~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~ 215 (422)
T 3d6k_A 136 CPVPGYDRHFTITEHFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFR 215 (422)
T ss_dssp EEESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCE
T ss_pred EeCCccHHHHHHHHHcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCE
Confidence 99999999999999999999999876555432 2 3789888 78999999999983 4556777 79999
Q ss_pred EEEeecccCCC-------CCcC------CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChH
Q 018172 158 LIHDLAYYWPQ-------YTPI------TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKE 224 (360)
Q Consensus 158 li~D~ay~~~~-------~~~~------~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~ 224 (360)
+|+||+|.+.. ..++ .+..++++++.||||. +++|+|+||+++ ++++++.+.......+.+.+.+
T Consensus 216 li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~-~~~l~~~l~~~~~~~~~~~~~~ 293 (422)
T 3d6k_A 216 IVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVSFFAS-SKENIEWYASHANVRGIGPNKL 293 (422)
T ss_dssp EEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCEEEEC-CHHHHHHHHHHHHHHCSCCCHH
T ss_pred EEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceEEEEe-CHHHHHHHHHHHHhhcCCCCHH
Confidence 99999997311 1122 2356789999999998 669999999999 8999999998887777889999
Q ss_pred HHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc----CCcccCCCCCcccccccccCCCCCCcccccCCc--
Q 018172 225 SQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-- 298 (360)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 298 (360)
+|.++.++++.. +.++.++++.++.++++++.+.+.|.+. +++.+..|.++ +|+|+++++
T Consensus 294 ~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g-------------~~~~~~~~~~~ 359 (422)
T 3d6k_A 294 NQLAHAQFFGDV-AGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGG-------------YFISVDVVPGT 359 (422)
T ss_dssp HHHHHHHHHCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBS-------------SCEEEEESTTC
T ss_pred HHHHHHHHHhCc-chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcc-------------eEEEEECCCCC
Confidence 999999988731 2234788999999999999999888753 33343444444 488888875
Q ss_pred hHHHHHHHHhhCeeeeC-CCCCC--C--CCCeEEEEecC-ChHHHHHHHHHHHHHHhchh
Q 018172 299 DEDCEKLLRAERIMARG-GRRFG--A--DAKYARVSMLS-REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 299 ~~~~~~~l~~~gI~~~p-g~~f~--~--~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~~ 352 (360)
.+.+.++|.++||.++| |..|+ . ..+++|||++. ++|++++++++|++++.+..
T Consensus 360 ~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~ 419 (422)
T 3d6k_A 360 ASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCVLMAA 419 (422)
T ss_dssp HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999 55563 1 36799999984 99999999999999987653
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=307.06 Aligned_cols=305 Identities=15% Similarity=0.176 Sum_probs=245.8
Q ss_pred cccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhc-CCCCCCCceEEEeCCCCCCcH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALS-SPGGPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~-~~gd~~~~~vl~~~p~~~~~~ 101 (360)
...|++..|. +++|++++++++ ..|.++++ ++|++|+|+++++..++..++ ++||. |+++.|+|+.+.
T Consensus 127 ~~~Y~~~~G~-----~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~----Vlv~~p~y~~~~ 196 (500)
T 3tcm_A 127 TGAYSHSQGI-----HGLRDAIASGIASRDGFPANA-DDIFLTDGASPGVHLMMQLLIRNEKDG----ILVPIPQYPLYS 196 (500)
T ss_dssp SSSCCCTTCC-----HHHHHHHHHHHHHHHSSCCCG-GGEEEESSSHHHHHHHHHHHCCSTTEE----EEEEESCCTHHH
T ss_pred CCCcCCCcCh-----HHHHHHHHHHHHhhcCCCCCc-ccEEEcCCHHHHHHHHHHHHcCCCCCE----EEEeCCCcHhHH
Confidence 4569999998 999999999976 44666655 589999999999999999998 79998 999999999999
Q ss_pred HHHHHhCCeeeeecCCcc---cccc-------CC------CeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEe
Q 018172 102 AETDYLRSGLYKWDGDAN---TFDK-------NN------GAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHD 161 (360)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~---~~~~-------~~------~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D 161 (360)
..++..|++++.++++.+ +++. ++ ++++|++++||||||.+++. .+.++|+++++++|+|
T Consensus 197 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~D 276 (500)
T 3tcm_A 197 ASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLAD 276 (500)
T ss_dssp HHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 999999999999987754 3332 11 68999999999999999982 4556688899999999
Q ss_pred ecccCCCC------CcCC---------CCCCccEEEecccccc-CCCCceEEEEeec--CHHHHHHHHHHHhhccccCCh
Q 018172 162 LAYYWPQY------TPIT---------GAADHDIMLFTLSKCT-GHAGSRIGWALVK--DTEVARKMTRFIELGSIGVSK 223 (360)
Q Consensus 162 ~ay~~~~~------~~~~---------~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~--~~~~~~~l~~~~~~~~~~~~~ 223 (360)
++|.+..+ .++. ....++++++||||.| |++|+|+||+++. ++++++.+.+... ...+.+.
T Consensus 277 eay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 355 (500)
T 3tcm_A 277 EVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIAS-VNLCSNI 355 (500)
T ss_dssp CTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHH-TTCCCCH
T ss_pred cCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHh-cccCCCH
Confidence 99985322 1211 1223468899999999 8999999999873 6888898887764 5678899
Q ss_pred HHHHHHHHHhcccCC------CchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC-
Q 018172 224 ESQLRAAKILGIVSD------DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES- 296 (360)
Q Consensus 224 ~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 296 (360)
+.|.++..+++.... .+..++++++++++++++++.+.|++++++.+..+.+++ |+|+++
T Consensus 356 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~-------------~~~~~~~ 422 (500)
T 3tcm_A 356 TGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAM-------------YVFPQIC 422 (500)
T ss_dssp HHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTT-------------EECCEEC
T ss_pred HHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEE-------------EEeeeec
Confidence 999999998873220 134677888899999999999999999888887777776 555433
Q ss_pred -Cc-------------h-HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 297 -KE-------------D-EDCEKLLRAERIMARGGRRFGA--DAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 297 -~~-------------~-~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
+. . ..+.++|+++||.++||+.|+. ..+++|++++.+++++++++++|.+++++..
T Consensus 423 lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i~~l~~~~~~~~ 495 (500)
T 3tcm_A 423 LPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFM 495 (500)
T ss_dssp CCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 21 1 2356888899999999999974 4568999998889999999999999987654
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=293.00 Aligned_cols=300 Identities=18% Similarity=0.208 Sum_probs=243.7
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc-CCCCCCCCc-EEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV-DNAVSDGRH-IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~~~~~~~-i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
..|++..|. +++|+++++++... |.++++ ++ |++|+|+++++..++..++++||+ |++++|+|..+..
T Consensus 57 ~~y~~~~g~-----~~l~~~la~~~~~~~g~~~~~-~~~v~~~~g~~~a~~~~~~~~~~~gd~----vl~~~~~~~~~~~ 126 (389)
T 1gd9_A 57 THYGPNIGL-----LELREAIAEKLKKQNGIEADP-KTEIMVLLGANQAFLMGLSAFLKDGEE----VLIPTPAFVSYAP 126 (389)
T ss_dssp CSCCCTTCC-----HHHHHHHHHHHHHHHCCCCCT-TTSEEEESSTTHHHHHHHTTTCCTTCE----EEEEESCCTTHHH
T ss_pred CCCCCCCCc-----HHHHHHHHHHHHHHhCCCCCC-CCeEEEcCChHHHHHHHHHHhCCCCCE----EEEcCCCchhHHH
Confidence 357777777 99999999998543 555555 47 999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcc-ccc--c-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC
Q 018172 103 ETDYLRSGLYKWDGDAN-TFD--K-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~-~~~--~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
.++..|++++.++.+.+ ++. . ++++++|++++||||||.+++ +.+.++|+++|+++|+|++|.+..
T Consensus 127 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~ 206 (389)
T 1gd9_A 127 AVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFI 206 (389)
T ss_dssp HHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred HHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcc
Confidence 99999999999987642 222 1 357899999999999999986 356678888999999999998643
Q ss_pred C-----CcCCC---CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCc
Q 018172 169 Y-----TPITG---AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 169 ~-----~~~~~---~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
+ .++.. ..++++++.|+||.++++|+|+||+++ ++++++.+.......+.+.+.+.|.++.++++....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-- 283 (389)
T 1gd9_A 207 YDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA-PSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-- 283 (389)
T ss_dssp CTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHH--
T ss_pred cCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEE-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCc--
Confidence 2 22222 246789999999999999999999999 799999998877766788999999999888873211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHH-hhCeeeeC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLR-AERIMARG 315 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~-~~gI~~~p 315 (360)
..++++.+++++++++++.+.|+++ ++.+..+.+++ |+|++++. ...+.+.|. ++||.++|
T Consensus 284 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~ 349 (389)
T 1gd9_A 284 WKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAF-------------YIFPRIRDTGLTSKKFSELMLKEARVAVVP 349 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTT-------------EECCBCGGGTCCHHHHHHHHHHHTCEECEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeee-------------EEEEeccCCCCCHHHHHHHHHHhCCEEEeC
Confidence 1388999999999999999999988 55555444433 67777752 255666665 89999999
Q ss_pred CCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 316 GRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 316 g~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
|..|+. .++++||+++.+++++++++++|.+++++.
T Consensus 350 g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~~~~ 386 (389)
T 1gd9_A 350 GSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKER 386 (389)
T ss_dssp GGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred chhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 998864 467999999889999999999999998653
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=297.20 Aligned_cols=294 Identities=18% Similarity=0.157 Sum_probs=238.4
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. +++|+++++++.. +|.+++++++|++|+|+++++..++..+.++||+ |+++.|+|..+...
T Consensus 57 ~~y~~~~~~-----~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~----vl~~~p~y~~~~~~ 127 (376)
T 2dou_A 57 YGYCLKSCT-----LPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDL----LLLPEVAYPSYFGA 127 (376)
T ss_dssp SSCCCHHHH-----HHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCE----EEEESSCCHHHHHH
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcCCCCE----EEECCCCcHhHHHH
Confidence 456655555 9999999999743 3555554448999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcccc-------cc--CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC--
Q 018172 104 TDYLRSGLYKWDGDANTF-------DK--NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ-- 168 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~-------~~--~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~-- 168 (360)
++..|.+++.++. .+++ .. ++++++|++++||||||.+++ +.+.++|+++|+++|+|++|.+..
T Consensus 128 ~~~~g~~~~~~~~-~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~ 206 (376)
T 2dou_A 128 ARVASLRTFLIPL-REDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYE 206 (376)
T ss_dssp HHHTTCEEEEECB-CTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSS
T ss_pred HHHcCCEEEEeeC-CCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccC
Confidence 9999999999886 2332 21 246899999999999999988 345678888999999999998532
Q ss_pred --CCcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 169 --YTPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 169 --~~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
..+.. +..++++++.|+||.+|++|+|+||+++ ++++++.+.......+.+.+.+.|.++.++++.. +.+
T Consensus 207 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~ 281 (376)
T 2dou_A 207 GEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALG-SEEALARLERVKGVIDFNQYAGVLRMGVEALKTP----KEV 281 (376)
T ss_dssp SCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEE-CHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC----HHH
T ss_pred CCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEec-CHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc----HHH
Confidence 11222 2346789999999999999999999998 8999999988777677788999999999888732 478
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFG 320 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~ 320 (360)
+++.++.++++++++.+.|+++ +.+..+.++ +|+|+++++. ..+.+.|.++||.++||..|+
T Consensus 282 ~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~ 346 (376)
T 2dou_A 282 VRGYARVYRERALGMAEALKGV--LSLLPPRAT-------------MYLWGRLPEGVDDLEFGLRLVERGVALAPGRGFG 346 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT--SEECCCCBS-------------SEEEEECCTTCCHHHHHHHHHHTTEECEEGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cCccCCCee-------------EEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhC
Confidence 9999999999999999999887 444333333 3678888643 566777777799999999886
Q ss_pred C-CCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 321 A-DAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 321 ~-~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
. .++++|++++.+++++++++++|++++
T Consensus 347 ~~~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 347 PGGKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp GGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred CCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 4 467999999879999999999998865
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=303.99 Aligned_cols=297 Identities=19% Similarity=0.208 Sum_probs=238.3
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|++..|. ++||++++++++ +|..+.+ ++|++|+|+++++..+ ..++++||+ |++++|+|..+...+
T Consensus 105 ~~y~~~~g~-----~~lr~~ia~~~~-~g~~~~~-~~i~~t~G~~~al~~~-~~l~~~gd~----Vl~~~p~~~~~~~~~ 172 (449)
T 3qgu_A 105 SGYGAEQGQ-----GALREAVASTFY-GHAGRAA-DEIFISDGSKCDIARI-QMMFGSKPT----VAVQDPSYPVYVDTS 172 (449)
T ss_dssp CCSTTTTCC-----HHHHHHHHHHHH-TTTTCCG-GGEEEESCHHHHHHHH-HHHHCSSSC----EEEEESCCTHHHHHH
T ss_pred CCCCCCCCc-----HHHHHHHHHHHH-cCCCCCH-HHEEEccCHHHHHHHH-HHHhCCCCE----EEEcCCCChhHHHHH
Confidence 468777777 999999999987 6666665 4899999999999998 888899998 999999999999999
Q ss_pred HHhCCe----------eeeecCCcc-ccccC----CCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeeccc
Q 018172 105 DYLRSG----------LYKWDGDAN-TFDKN----NGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYY 165 (360)
Q Consensus 105 ~~~g~~----------~~~~~~~~~-~~~~~----~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~ 165 (360)
+..|.+ ++.++.+.+ ++..+ +++++|++++||||||.+++ +.+.++|+++|+++|+||+|.
T Consensus 173 ~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~ 252 (449)
T 3qgu_A 173 VMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYA 252 (449)
T ss_dssp HHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG
T ss_pred HHcCCcccccccccceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchH
Confidence 999998 888887754 44432 57899999999999999998 345677888999999999999
Q ss_pred CCCC-----CcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHH--------HHHHHHhhccccCChHHHHHH
Q 018172 166 WPQY-----TPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVAR--------KMTRFIELGSIGVSKESQLRA 229 (360)
Q Consensus 166 ~~~~-----~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~ 229 (360)
+..+ .++. ...++++++.||||.+|++|+|+||+++ ++++++ .+.........+.+.+.|.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 331 (449)
T 3qgu_A 253 LYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVV-PKALKYANGEPVHADWNRVMTTCFNGASNIVQAGG 331 (449)
T ss_dssp GGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEEC-CTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred hhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEec-CHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHH
Confidence 5221 1221 2356789999999999999999999998 666654 455555556668999999999
Q ss_pred HHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--h-HHHHHHH
Q 018172 230 AKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--D-EDCEKLL 306 (360)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~l 306 (360)
.++++.. ...++++.++.++++++++.+.|+++ ++.+..+.++ +|+|+++++ . +.+..++
T Consensus 332 ~~~l~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~ 394 (449)
T 3qgu_A 332 LACLQPE---GLKEMNAMIKFYKENAQILKTTFTEM-GFSVYGGDDA-------------PYIWVGFPGKPSWDVFAEIL 394 (449)
T ss_dssp HHHTSHH---HHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEESSSS-------------SEEEEECTTSCHHHHHHHHH
T ss_pred HHHHhhc---CHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCe-------------eEEEEECCCCCHHHHHHHHH
Confidence 9888731 12678999999999999999999988 4554444433 378888862 2 4445556
Q ss_pred HhhCeeeeCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 307 RAERIMARGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 307 ~~~gI~~~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
+++||.++||..|+. .++++|||++.++|++++++++|++++.+.
T Consensus 395 ~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 395 ERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAYGKR 440 (449)
T ss_dssp HHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHC--
T ss_pred HHCCEEEecchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 666999999999975 578999998779999999999999999765
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=300.57 Aligned_cols=293 Identities=11% Similarity=0.045 Sum_probs=225.7
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCC-CCCCCC-cEEEcCChHHHHHHHHHhhcC--CCCCCCceEEEeCCCCCC
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDN-AVSDGR-HIVIGTGSTQLYQAALYALSS--PGGPEPISVVSAAPYYSQ 99 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~-~~~~~~-~i~~t~G~t~~l~~~~~~l~~--~gd~~~~~vl~~~p~~~~ 99 (360)
...|++..|. ++||+++++++...+. .+.+++ ++++|+|+++++++++..+.+ + |+ |++++|+|+.
T Consensus 65 ~~~Y~~~~G~-----~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~----Vlv~~P~y~~ 134 (405)
T 3k7y_A 65 EKPYLLGNGT-----EDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ET----LYVTNPPYIN 134 (405)
T ss_dssp CCCCCTTSSC-----HHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CE----EEEESSCCHH
T ss_pred CCCCCCCCCc-----HHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CE----EEEeCCCCHh
Confidence 4569999998 9999999998754433 334332 469999999999999999987 8 88 9999999999
Q ss_pred cHHHHHHhCCeeeeecC-Ccc--cccc---------CCCeeEEEEcCC-CCCCcccchH----HHHHHhhhcCcEEEEee
Q 018172 100 YPAETDYLRSGLYKWDG-DAN--TFDK---------NNGAYIEVVNSP-NNPDGTIREA----VLAKVNRSAEGKLIHDL 162 (360)
Q Consensus 100 ~~~~~~~~g~~~~~~~~-~~~--~~~~---------~~~~~~i~~~~p-~NPtG~~~~~----~~~~~~~~~~~~li~D~ 162 (360)
|..+++..|++++.++. +.+ +++. .++++++++++| |||||.++++ .+.++|+++++++|+||
T Consensus 135 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De 214 (405)
T 3k7y_A 135 HVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDI 214 (405)
T ss_dssp HHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_pred HHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEec
Confidence 99999999999999987 332 2222 145678888765 8999999993 45577888999999999
Q ss_pred cccCCCCC-------c---CCCCCCccEEEeccccccCCCCceEEEEee--cCHHHHHHHH----HHHhhccccCChHHH
Q 018172 163 AYYWPQYT-------P---ITGAADHDIMLFTLSKCTGHAGSRIGWALV--KDTEVARKMT----RFIELGSIGVSKESQ 226 (360)
Q Consensus 163 ay~~~~~~-------~---~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~--~~~~~~~~l~----~~~~~~~~~~~~~~~ 226 (360)
+|.+..+. + +....+++++++||||+|+++|+|+||+++ +++++++.+. ........+.+.++|
T Consensus 215 ~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q 294 (405)
T 3k7y_A 215 AYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTN 294 (405)
T ss_dssp SCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHH
T ss_pred CcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHH
Confidence 99853321 1 113457899999999999999999999853 4677665553 333334456778999
Q ss_pred HHHHHHhccc--CCCchhHHHHHHHHHHHHHHHHHHHHH----hcCC---cccCCCCCcccccccccCCCCCCcccccCC
Q 018172 227 LRAAKILGIV--SDDYPNFFEYGRRLMSERWNMLRQVIR----QSGV---FGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297 (360)
Q Consensus 227 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
.++.++++.- .+.+.+++++++++++++|+.+.+.|+ +++. +.+..|.|++ |+|++++
T Consensus 295 ~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~-------------f~~~~l~ 361 (405)
T 3k7y_A 295 RILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGL-------------FSFVPLL 361 (405)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSS-------------EEECGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceE-------------EEecCCC
Confidence 9988888731 112346788889999999999999999 7742 4555666665 7888876
Q ss_pred chHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHHhc
Q 018172 298 EDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 298 ~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~ 350 (360)
. +++..+ +++||.+.||. |||++. +++++++++++|++++.+
T Consensus 362 ~-~~~~~L-~~~gV~v~p~~---------Ris~a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 362 A-KIAEHL-KTHHIYIINNG---------RINVSGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp G-GGTTTT-TTTTEECCTTS---------EEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred H-HHHHHH-HHCCEeecCCC---------eEEEeccCHHHHHHHHHHHHHHHhh
Confidence 5 445444 88999999852 999986 899999999999998864
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-39 Score=305.56 Aligned_cols=298 Identities=16% Similarity=0.230 Sum_probs=240.1
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|++..|. ++||+++++++.. .|..++++ +|++|+|+++++..++..++++||+ |++++|+|..+..
T Consensus 88 ~~~Y~~~~g~-----~~lr~~ia~~l~~~~g~~~~~~-~v~~t~G~~~al~~~~~~l~~~gd~----Vlv~~p~y~~~~~ 157 (447)
T 3b46_A 88 VNQYSPTRGR-----PSLINSLIKLYSPIYNTELKAE-NVTVTTGANEGILSCLMGLLNAGDE----VIVFEPFFDQYIP 157 (447)
T ss_dssp GGSCCCTTCC-----HHHHHHHHHHHTTTTTSCCCGG-GEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCTTHHH
T ss_pred CCCCCCCCCC-----HHHHHHHHHHHHHhcCCCCChh-hEEEeCCHHHHHHHHHHHHcCCCCE----EEEeCCCchhHHH
Confidence 3568888887 9999999999753 45555554 8999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcc-------------cccc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEE
Q 018172 103 ETDYLRSGLYKWDGDAN-------------TFDK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKL 158 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~-------------~~~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~l 158 (360)
.++..|++++.++.+.+ .++. ++++++|++++||||||.+++ +.+.++|+++|+++
T Consensus 158 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~l 237 (447)
T 3b46_A 158 NIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVI 237 (447)
T ss_dssp HHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEE
Confidence 99999999998876533 1211 357899999999999999987 35667888899999
Q ss_pred EEeecccCCCC----CcCCC----CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHH
Q 018172 159 IHDLAYYWPQY----TPITG----AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAA 230 (360)
Q Consensus 159 i~D~ay~~~~~----~~~~~----~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 230 (360)
|+||+|.+..+ .++.. ..++++++.|+||.++++|+|+||+++.++++++.+.......+++.+.+.|.++.
T Consensus 238 i~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~ 317 (447)
T 3b46_A 238 ISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACA 317 (447)
T ss_dssp EEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred EEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHH
Confidence 99999985322 22221 34789999999999999999999999756899999988776677889999999998
Q ss_pred HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc------------
Q 018172 231 KILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE------------ 298 (360)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 298 (360)
++|+... .+.++++.++.++++++++.+.|+++ ++.+..|.+++ |+|++++.
T Consensus 318 ~aL~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~-------------~~~~~~~~~~~p~~~~~~~~ 381 (447)
T 3b46_A 318 NSINDAL--KIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTY-------------FVLVDFSKVKIPEDYPYPEE 381 (447)
T ss_dssp HHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHHH-TCCEECCSBSS-------------EEEEECTTCCCCTTCCCCGG
T ss_pred HHHhCCc--chHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeE-------------EEEEecccccCccccccccc
Confidence 8887431 13788999999999999999999988 45555555554 56665542
Q ss_pred ------hHHHHH-HHHhhCeeeeCCCCCCCC------CCeEEEEecCChHHHHHHHHHHHHH
Q 018172 299 ------DEDCEK-LLRAERIMARGGRRFGAD------AKYARVSMLSREEIFNIFLERLSAI 347 (360)
Q Consensus 299 ------~~~~~~-~l~~~gI~~~pg~~f~~~------~~~~R~s~~~~~e~~~~~~~~l~~~ 347 (360)
...+.+ +++++||.+.||..|+.. ++++|||++.++|++++++++|.++
T Consensus 382 ~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 382 ILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKLL 443 (447)
T ss_dssp GSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHHHHHHHHHGGGG
T ss_pred cccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 234444 555789999999988642 6799999988999999999999873
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=297.19 Aligned_cols=300 Identities=16% Similarity=0.183 Sum_probs=245.1
Q ss_pred cccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
.|++..|. .++++++++++.. .|.+++++++|++|+|+++++..++..++++||+ |+++.|+|..+...+
T Consensus 73 ~y~~~~g~-----~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~----vl~~~~~~~~~~~~~ 143 (407)
T 3nra_A 73 AYTEYRGD-----LGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDK----VAIVQPDYFANRKLV 143 (407)
T ss_dssp HSCCTTCC-----HHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTCE----EEEEESCCTHHHHHH
T ss_pred CcCCCCCC-----HHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCE----EEEcCCcccchHHHH
Confidence 47777776 9999999998754 4666666568999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCC-------cccccc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccC
Q 018172 105 DYLRSGLYKWDGD-------ANTFDK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYW 166 (360)
Q Consensus 105 ~~~g~~~~~~~~~-------~~~~~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~ 166 (360)
+..|++++.++.+ ..+++. .+++++|++++||||||.+++ +.+.++|+++|+++|+|++|.+
T Consensus 144 ~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~ 223 (407)
T 3nra_A 144 EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSR 223 (407)
T ss_dssp HHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred HHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence 9999999998873 112221 247899999999999999998 3566788889999999999985
Q ss_pred CC-----CCcCC----CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccC
Q 018172 167 PQ-----YTPIT----GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVS 237 (360)
Q Consensus 167 ~~-----~~~~~----~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (360)
.. ..++. ...++++++.|+||.++++|+|+||+++ ++++++.+.......+.+.+.+.|.++.++++.
T Consensus 224 ~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~-- 300 (407)
T 3nra_A 224 LRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG-SRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE-- 300 (407)
T ss_dssp SBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEE-CHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCC--
T ss_pred cccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEc-CHHHHHHHHHHHhhhccCCChHHHHHHHHHHhc--
Confidence 22 12221 2466789999999999999999999998 899999999888777888888888887777762
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHH-HhhCee
Q 018172 238 DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLL-RAERIM 312 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l-~~~gI~ 312 (360)
. ..++++.+++++++++++.+.|++++++.+..+.+++ |+|++++. ...+.+.| +++||.
T Consensus 301 ~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~ 365 (407)
T 3nra_A 301 A--PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGS-------------YLFPRLPKLAVAPAEFVKILRLQAGVV 365 (407)
T ss_dssp C--TTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSS-------------EECCBCCCBSSCHHHHHHHHHHHHCEE
T ss_pred c--chHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeE-------------EEEEeCCCCCCCHHHHHHHHHHhCCEE
Confidence 2 2788899999999999999999998777665555443 77887764 24555555 557999
Q ss_pred eeCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 313 ARGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 313 ~~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
++||..|+. ..+++|++++.++|++++++++|.+++++.+
T Consensus 366 v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 366 VTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp CEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred EeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence 999998874 5789999998899999999999999987654
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=293.37 Aligned_cols=294 Identities=18% Similarity=0.226 Sum_probs=235.0
Q ss_pred cccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCC-CCCCceEEEeCCCCCCcH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPG-GPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~g-d~~~~~vl~~~p~~~~~~ 101 (360)
...|++..|. +++|++++++++ .+|..+++ ++|++|+|+++++..++..++++| |+ |+++.|+|..+.
T Consensus 69 ~~~y~~~~g~-----~~lr~~la~~l~~~~g~~~~~-~~i~~~~g~~~al~~~~~~l~~~g~d~----vl~~~p~~~~~~ 138 (398)
T 3ele_A 69 LHGYTSAQGD-----VETRAAIAEFLNNTHGTHFNA-DNLYMTMGAAASLSICFRALTSDAYDE----FITIAPYFPEYK 138 (398)
T ss_dssp HHSCCCTTCC-----HHHHHHHHHHHHHHHCCCCCG-GGEEEESSHHHHHHHHHHHHCCSTTCE----EEEESSCCTHHH
T ss_pred cCCcCCCCCc-----HHHHHHHHHHHHHHhCCCCCh-HHEEEccCHHHHHHHHHHHHcCCCCCE----EEEeCCCchhhH
Confidence 3568877887 999999999875 44555555 589999999999999999999999 98 999999999999
Q ss_pred HHHHHhCCeeeeecCCcccccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhh------cCcEEEEee
Q 018172 102 AETDYLRSGLYKWDGDANTFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRS------AEGKLIHDL 162 (360)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~------~~~~li~D~ 162 (360)
..++..|.+++.++.+.+++.. ++++++|++++||||||.+++. .+.++|++ +|+++|+||
T Consensus 139 ~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De 218 (398)
T 3ele_A 139 VFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADE 218 (398)
T ss_dssp HHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEEC
T ss_pred HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEec
Confidence 9999999999999887543221 3579999999999999999982 34577887 899999999
Q ss_pred cccCCC-----CCcCCCCCCccEEEeccccccCCCCceEEEEeecCHH------HHHHHHHHHhh-ccccCChHHHHHHH
Q 018172 163 AYYWPQ-----YTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTE------VARKMTRFIEL-GSIGVSKESQLRAA 230 (360)
Q Consensus 163 ay~~~~-----~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~------~~~~l~~~~~~-~~~~~~~~~~~~~~ 230 (360)
+|.+.. .+......++++++.|+||.++++|+|+||+++ +++ +.+.+...... ...+.+.+.|.++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 297 (398)
T 3ele_A 219 PYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLV-PDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIV 297 (398)
T ss_dssp TTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEEC-CTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHT
T ss_pred cccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEE-cchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHH
Confidence 998522 233335667899999999999999999999999 444 44555444333 35677888888887
Q ss_pred HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHh
Q 018172 231 KILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRA 308 (360)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 308 (360)
++++. . . .++.++++++++.+.|+++ ++.+..+.+++ |+|++++. ...+.+.|++
T Consensus 298 ~~l~~---~--~----~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~ 354 (398)
T 3ele_A 298 KCQGA---T--G----DINAYKENRDLLYEGLTRI-GYHCFKPDGAF-------------YMFVKALEDDSNAFCEKAKE 354 (398)
T ss_dssp TCTTC---C--C----CHHHHHHHHHHHHHHHHHH-TCCEECCSBSS-------------EEEEECSSSCHHHHHHHHHT
T ss_pred HHhcC---H--H----HHHHHHHHHHHHHHHHHHc-CCeecCCCeeE-------------EEEEEcCCCCHHHHHHHHHH
Confidence 76652 1 1 3677888999999999887 45554454443 68888864 3667778889
Q ss_pred hCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 309 ERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 309 ~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
+||.++||..|+. ++++|++++.++|++++++++|.+++++.+
T Consensus 355 ~gi~v~~g~~~~~-~~~iRis~~~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 355 EDVLIVAADGFGC-PGWVRISYCVDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp TTEECEESGGGTC-TTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEeCccccCC-CCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999985 779999998899999999999999987654
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=296.29 Aligned_cols=296 Identities=22% Similarity=0.308 Sum_probs=244.5
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|.+..|. ++||++++++++. + .+++|++|+|+++++..++..++++||+ |+++.|+|..+...+
T Consensus 57 ~~y~~~~g~-----~~l~~~la~~~~~----~-~~~~v~~~~g~~~a~~~~~~~l~~~gd~----Vl~~~~~~~~~~~~~ 122 (375)
T 3op7_A 57 LNYGWIEGS-----PAFKKSVSQLYTG----V-KPEQILQTNGATGANLLVLYSLIEPGDH----VISLYPTYQQLYDIP 122 (375)
T ss_dssp CSSCCTTCC-----HHHHHHHHTTSSS----C-CGGGEEEESHHHHHHHHHHHHHCCTTCE----EEEEESSCTHHHHHH
T ss_pred cCCCCCCCh-----HHHHHHHHHHhcc----C-ChhhEEEcCChHHHHHHHHHHhcCCCCE----EEEeCCCchhHHHHH
Confidence 357777777 9999999998741 1 4468999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCCc-ccc--c-----c--CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCCC
Q 018172 105 DYLRSGLYKWDGDA-NTF--D-----K--NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQYT 170 (360)
Q Consensus 105 ~~~g~~~~~~~~~~-~~~--~-----~--~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~~ 170 (360)
+..|++++.++.+. +++ + . ++++++|++++||||||.+++ +.+.++|+++|+++|+|++|......
T Consensus 123 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~ 202 (375)
T 3op7_A 123 KSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL 202 (375)
T ss_dssp HHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS
T ss_pred HHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc
Confidence 99999999888653 232 1 1 368999999999999999998 35667888999999999999864332
Q ss_pred ---cCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 171 ---PITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 171 ---~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
...+..++++++.||||.++++|+|+||+++ ++++++.+.......+.+.+.+.|.++..+++. .+.++++.
T Consensus 203 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~ 277 (375)
T 3op7_A 203 DVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLALAH----YQEILERN 277 (375)
T ss_dssp CCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEEC-CHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHT----HHHHHHHH
T ss_pred CCCchhhhcCCEEEEeEChhhcCCcccceEEEEe-CHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhc----cHHHHHHH
Confidence 2224567889999999999999999999999 999999998888777888899999988888873 24788999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---h-HHHHHHHHhhCeeeeCCCCCCCCC
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---D-EDCEKLLRAERIMARGGRRFGADA 323 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~gI~~~pg~~f~~~~ 323 (360)
++.++++++.+.+.|++++++.+..+.+++ ++|+.++. . +.+..+++++||.++||..|+. +
T Consensus 278 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-~ 343 (375)
T 3op7_A 278 RHILEENLAILDQWIEEEPLVSYIRPAVVS-------------TSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFER-D 343 (375)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEECCCSSSS-------------CEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTC-T
T ss_pred HHHHHHHHHHHHHHHhhCCCceEecCCCeE-------------EEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCC-C
Confidence 999999999999999998777766666554 34444432 2 4455566899999999999985 7
Q ss_pred CeEEEEecCChHHHHHHHHHHHHHHhchhc
Q 018172 324 KYARVSMLSREEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 324 ~~~R~s~~~~~e~~~~~~~~l~~~~~~~~~ 353 (360)
+++|++++.+.|++++++++|.+++++.++
T Consensus 344 ~~iRi~~~~~~~~i~~~l~~l~~~l~~~~~ 373 (375)
T 3op7_A 344 GYVRLGFACEQETLIKGLEKLSQFLRRFDK 373 (375)
T ss_dssp TEEEECCCSCHHHHHHHHHHHHHHHGGGC-
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 899999988889999999999999987653
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-38 Score=295.72 Aligned_cols=300 Identities=16% Similarity=0.226 Sum_probs=242.6
Q ss_pred cccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|++..|. +++|++++++++ .++.++.+.++|++|+|+++++..++..++++||+ |+++.|+|..+..
T Consensus 54 ~~~y~~~~g~-----~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~----vl~~~p~~~~~~~ 124 (410)
T 3e2y_A 54 MNQYTRGFGH-----PALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDE----VIIMVPFYDCYEP 124 (410)
T ss_dssp GGSCCCTTCC-----HHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCTTHHH
T ss_pred ccCCCCCCCh-----HHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCE----EEEeCCCchhhHH
Confidence 3468887777 999999999987 35666666468999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCc-----------------ccccc--CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEE
Q 018172 103 ETDYLRSGLYKWDGDA-----------------NTFDK--NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLI 159 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~-----------------~~~~~--~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li 159 (360)
.++..|.+++.++.+. +.+.. ++++++|++++||||||.+++ +.+.++|+++|+++|
T Consensus 125 ~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li 204 (410)
T 3e2y_A 125 MVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCI 204 (410)
T ss_dssp HHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEE
Confidence 9999999999887652 11211 357999999999999999986 356678888999999
Q ss_pred EeecccCCCC-----Cc---CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHH
Q 018172 160 HDLAYYWPQY-----TP---ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAK 231 (360)
Q Consensus 160 ~D~ay~~~~~-----~~---~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (360)
+|++|.+..+ .+ +....++++++.|+||.+|++|+|+||+++ ++++++.+.......+++.+.+.|.++.+
T Consensus 205 ~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 283 (410)
T 3e2y_A 205 SDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIG-PAHLIKHLQTVQQNSFYTCATPLQAALAE 283 (410)
T ss_dssp EECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEEC-CHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred EEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEE-CHHHHHHHHHHHHhhccCCChHHHHHHHH
Confidence 9999985221 12 223457789999999999999999999998 89999999888877788899999999999
Q ss_pred Hhccc---CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----------
Q 018172 232 ILGIV---SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---------- 298 (360)
Q Consensus 232 ~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 298 (360)
+++.. ......++++.++.++++++++.+.|+++ ++.+..+.+++ |+|+++..
T Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 349 (410)
T 3e2y_A 284 AFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGY-------------FIIADVSSLGADLSDMNS 349 (410)
T ss_dssp HHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSS-------------EEEEECGGGCCCCTTCCS
T ss_pred HHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccE-------------EEEEEchhhhcccccccc
Confidence 88620 01223889999999999999999999998 55555555554 55555432
Q ss_pred ----h-HHHHHHHHhhCeeeeCCCCCCC------CCCeEEEEecCChHHHHHHHHHHHHH
Q 018172 299 ----D-EDCEKLLRAERIMARGGRRFGA------DAKYARVSMLSREEIFNIFLERLSAI 347 (360)
Q Consensus 299 ----~-~~~~~~l~~~gI~~~pg~~f~~------~~~~~R~s~~~~~e~~~~~~~~l~~~ 347 (360)
. +.+..+++++||.+.||+.|+. ..+++|||++.++|++++++++|+++
T Consensus 350 ~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~l~~l~~~ 409 (410)
T 3e2y_A 350 DEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAW 409 (410)
T ss_dssp SCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHhc
Confidence 1 4455577888999999998864 25899999988999999999999763
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=295.49 Aligned_cols=305 Identities=16% Similarity=0.164 Sum_probs=234.9
Q ss_pred cccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCC-CCCceEEEe-CCCCCCcHH
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGG-PEPISVVSA-APYYSQYPA 102 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd-~~~~~vl~~-~p~~~~~~~ 102 (360)
.|+++.|. ++||++++++++ .+|..+.+ ++|++|+|+++++++++..++++|| .....|+++ .|+|..+..
T Consensus 70 ~y~~~~g~-----~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~ 143 (417)
T 3g7q_A 70 NYDGPQGK-----TALLNALAVLLRETLGWDIEP-QNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYAD 143 (417)
T ss_dssp STTCTTSH-----HHHHHHHHHHHHHHHCCCCCG-GGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC
T ss_pred ccCCCCCc-----HHHHHHHHHHHHHHhCCCCCc-ccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchh
Confidence 68888887 999999999975 45666665 5899999999999999999999887 111139997 999999887
Q ss_pred HHHHh------CCeeeeec-------CCccccccCCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeeccc
Q 018172 103 ETDYL------RSGLYKWD-------GDANTFDKNNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYY 165 (360)
Q Consensus 103 ~~~~~------g~~~~~~~-------~~~~~~~~~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~ 165 (360)
.+... +..+..++ +|.+.+..++++++|++++||||||.+++ +.+.++|+++|+++|+|++|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~ 223 (417)
T 3g7q_A 144 SGLEDDLFVSARPNIELLPEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYG 223 (417)
T ss_dssp -----CCEEECCCEEEEEGGGEEEEECCGGGCCCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred hccchhhhccccCcccccCCcccccccCHHHhccccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCc
Confidence 65432 33444333 35555555678999999999999999998 355677888999999999998
Q ss_pred CCC----CCc-CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCc
Q 018172 166 WPQ----YTP-ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 166 ~~~----~~~-~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
.+. +.. .....++++++.|||| ++++|+|+||+++ ++++++.+.......+.+.+.+.|.++.++++. ..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 299 (417)
T 3g7q_A 224 VPFPGIIFSEARPLWNPNIILCMSLSK-LGLPGSRCGIIIA-NDKTITAIANMNGIISLAPGGMGPAMMCEMIKR--NDL 299 (417)
T ss_dssp TTTTCCBCSCCCCCCCTTEEEEEESGG-GTCTTSCCEEEEC-CHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHT--TCH
T ss_pred cccccccccccccCCCCCEEEEEechh-ccCCCcceEEEEe-CHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcC--cch
Confidence 521 111 1234678999999999 6889999999998 899999999888877888999999999998873 334
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHh-cCC--cccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCee
Q 018172 241 PNFFEY-GRRLMSERWNMLRQVIRQ-SGV--FGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIM 312 (360)
Q Consensus 241 ~~~~~~-~~~~~~~~~~~l~~~l~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~ 312 (360)
..+..+ +++.++++++.+.+.|.+ ++. +.+..+.++ +|+|++++. .+.+.+.|.++||.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~l~~~l~~~gi~ 366 (417)
T 3g7q_A 300 LRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGA-------------IFLWLWFKDLPITTELLYQRLKARGVL 366 (417)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBS-------------SEEEEECTTCSSCHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcc-------------eEEEEEcCCCCCCHHHHHHHHHHCCEE
Confidence 455555 788899999999999987 443 333334433 478888764 26777788899999
Q ss_pred eeCCCCCCCC--------CCeEEEEecCChHHHHHHHHHHHHHHhchhc
Q 018172 313 ARGGRRFGAD--------AKYARVSMLSREEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 313 ~~pg~~f~~~--------~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~~ 353 (360)
++||..|+.. ++++|||++.++|++++++++|.+++.+..+
T Consensus 367 v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 367 MVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp CEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999988642 4699999988999999999999999987643
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=289.10 Aligned_cols=297 Identities=18% Similarity=0.229 Sum_probs=242.6
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. +++|++++++++. +|.++.+ ++|++|+|+++++..++..++++||+ |++++|+|..+...
T Consensus 61 ~~y~~~~g~-----~~l~~~la~~~~~~~g~~~~~-~~v~~~~g~~~a~~~~~~~~~~~gd~----vl~~~~~~~~~~~~ 130 (388)
T 1j32_A 61 TRYGPAAGE-----PRLREAIAQKLQRDNGLCYGA-DNILVTNGGKQSIFNLMLAMIEPGDE----VIIPAPFWVSYPEM 130 (388)
T ss_dssp CSCCCTTCC-----HHHHHHHHHHHHHHHCCCCCG-GGEEEESHHHHHHHHHHHHHCCTTCE----EEEESSCCTHHHHH
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHhcCCCCCh-hhEEEcCCHHHHHHHHHHHhcCCCCE----EEEcCCCChhHHHH
Confidence 458877777 9999999999863 3555554 58999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cc--cc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC
Q 018172 104 TDYLRSGLYKWDGDAN-TF--DK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~--~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
++..|.+++.++.+.+ ++ +. ++++++|++++||||||.+++ +.+.++|+++|+++|+|++|.+..+
T Consensus 131 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~ 210 (388)
T 1j32_A 131 VKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILY 210 (388)
T ss_dssp HHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred HHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhccc
Confidence 9999999999987642 22 11 357899999999999999987 3566788889999999999985322
Q ss_pred -----CcCCCC----CCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCc
Q 018172 170 -----TPITGA----ADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 170 -----~~~~~~----~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
.++... .++++++.|+||.++++|+|+||+++ ++++++.+.......+.+.+.+.|.++.++++. .
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~--~-- 285 (388)
T 1j32_A 211 DDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAG-PVPLVKAATKIQGHSTSNVCTFAQYGAIAAYEN--S-- 285 (388)
T ss_dssp TTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHS--C--
T ss_pred CCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEe-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC--C--
Confidence 122211 45789999999999999999999998 899999998887777788999999988888873 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHH-hhCeeeeC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLR-AERIMARG 315 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~-~~gI~~~p 315 (360)
..++++.+++++++++++.+.|++++++.+..+.+++ |+|++++. ...+.+.|. ++||.++|
T Consensus 286 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~ 352 (388)
T 1j32_A 286 QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAF-------------YMFPSIAKTGRSSLDFCSELLDQHQVATVP 352 (388)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTT-------------EECCBCGGGTCCHHHHHHHHHHHHCEECEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeE-------------EEEEecCCCCCCHHHHHHHHHHhCCEEEeC
Confidence 2789999999999999999999998666665555443 56666642 355555555 57999999
Q ss_pred CCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 316 GRRFGADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 316 g~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
|..|+. ++++|+|++.++|++++++++|.+++++
T Consensus 353 g~~~~~-~~~iRis~~~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 353 GAAFGA-DDCIRLSYATDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp GGGGTC-TTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhCC-CCcEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 998875 6799999988999999999999998864
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=290.36 Aligned_cols=292 Identities=20% Similarity=0.276 Sum_probs=238.9
Q ss_pred cccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
.|++..|. +++|++++++++. +|.++.+ ++|++|+|+++++..++..++++||+ |++++|+|..+...+
T Consensus 73 ~y~~~~g~-----~~lr~~la~~~~~~~g~~~~~-~~v~~~~g~t~al~~~~~~l~~~gd~----Vl~~~~~~~~~~~~~ 142 (389)
T 1o4s_A 73 KYTDPRGI-----YELREGIAKRIGERYKKDISP-DQVVVTNGAKQALFNAFMALLDPGDE----VIVFSPVWVSYIPQI 142 (389)
T ss_dssp CCCCTTCC-----HHHHHHHHHHHHHHHTCCCCG-GGEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCTTHHHHH
T ss_pred CCCCCCCC-----HHHHHHHHHHHHHHhCCCCCH-HHEEEecCHHHHHHHHHHHhCCCCCE----EEEcCCCchhHHHHH
Confidence 57776776 9999999999864 3555555 58999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCCC
Q 018172 105 DYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQYT 170 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~~ 170 (360)
+..|++++.++.+.+ ++.. ++++++|++++||||||.+++ +.+.++|+++|+++|+|++|.+..+.
T Consensus 143 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~ 222 (389)
T 1o4s_A 143 ILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYT 222 (389)
T ss_dssp HHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCS
T ss_pred HHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccC
Confidence 999999999987642 2211 357899999999999999987 35667888899999999999864331
Q ss_pred ----cCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 171 ----PIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 171 ----~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
++. ...++++++.|+||.++++|+|+||+++ ++++++.+.......+.+.+.+.|.++.++++. .
T Consensus 223 g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~------~- 294 (389)
T 1o4s_A 223 DEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLIS-SEKVATAVSKIQSHTTSCINTVAQYAALKALEV------D- 294 (389)
T ss_dssp SCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTC------C-
T ss_pred CCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEe-CHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhc------c-
Confidence 111 1257899999999999999999999999 899999998877766788899999988887762 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-chHHHHHHHH-hhCeeeeCCCCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-EDEDCEKLLR-AERIMARGGRRFGA 321 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~-~~gI~~~pg~~f~~ 321 (360)
+++.++.++++++++.+.|+++ ++.+..+.+++ |+|++++ +...+.+.|. ++||.++||..|+.
T Consensus 295 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-------------~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~ 360 (389)
T 1o4s_A 295 NSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAF-------------YLFFKVRGDDVKFCERLLEEKKVALVPGSAFLK 360 (389)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSS-------------EEEEECSSCHHHHHHHHHHHHCEECEEGGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCeeecCCcce-------------EEEEeCCCCHHHHHHHHHHHCCEEEeCchhcCC
Confidence 6788899999999999999988 55554444433 6777774 4455666664 89999999998875
Q ss_pred CCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 322 DAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 322 ~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
++++|+|++.+++++++++++|.+++++
T Consensus 361 -~~~~Ris~~~~~~~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 361 -PGFVRLSFATSIERLTEALDRIEDFLNS 388 (389)
T ss_dssp -TTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred -CCeEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 6799999988999999999999998854
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=297.85 Aligned_cols=303 Identities=17% Similarity=0.161 Sum_probs=243.8
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc-CCC-CCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV-DNA-VSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~-~~~-~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
..|++..|. +++|+++++++..+ |.+ +.+ ++|++|+|+++++..++..++++||+ |+++.|+|..+..
T Consensus 79 ~~y~~~~g~-----~~lr~~la~~l~~~~g~~~~~~-~~v~~t~G~~~al~~~~~~l~~~gd~----Vl~~~p~y~~~~~ 148 (425)
T 1vp4_A 79 LQYSTTEGD-----PVLKQQILKLLERMYGITGLDE-DNLIFTVGSQQALDLIGKLFLDDESY----CVLDDPAYLGAIN 148 (425)
T ss_dssp TSCCCTTCC-----HHHHHHHHHHHHHHHCCCSCCG-GGEEEEEHHHHHHHHHHHHHCCTTCE----EEEEESCCHHHHH
T ss_pred cCCCCCCCC-----HHHHHHHHHHHHhccCCCCCCc-ccEEEeccHHHHHHHHHHHhCCCCCE----EEEeCCCcHHHHH
Confidence 467777777 99999999998544 544 444 58999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcccccc-------C--------CCeeEE-EEcCCCCCCcccchH----HHHHHhhhcCcEEEEee
Q 018172 103 ETDYLRSGLYKWDGDANTFDK-------N--------NGAYIE-VVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDL 162 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~~~~~-------~--------~~~~~i-~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ 162 (360)
.++..|++++.++.+.++++. + .++++| ++++||||||.+++. .+.++|+++|+++|+||
T Consensus 149 ~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De 228 (425)
T 1vp4_A 149 AFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDD 228 (425)
T ss_dssp HHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHcCCEEEEeccCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 999999999988865443322 1 268888 579999999999983 56678888999999999
Q ss_pred cccCCCC-----CcCC--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcc
Q 018172 163 AYYWPQY-----TPIT--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGI 235 (360)
Q Consensus 163 ay~~~~~-----~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (360)
+|.+..+ .++. +..++++++.|+||.++ +|+|+||+++ ++++++.+.......+++.|.+.|.++.++++.
T Consensus 229 ~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~ 306 (425)
T 1vp4_A 229 PYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAG-SKEFIRKIVQAKQSADLCSPAITHRLAARYLER 306 (425)
T ss_dssp SSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEEC-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred CCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceEEEee-CHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhc
Confidence 9986322 1221 23467899999999999 9999999999 799999998877666778899999999998874
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHhc-C---CcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHh
Q 018172 236 VSDDYPNFFEYGRRLMSERWNMLRQVIRQS-G---VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRA 308 (360)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~ 308 (360)
. .++.++++.++.++++++++.+.|+++ + ++.+..|.+ ++|+|+++++ ...+.+.|.+
T Consensus 307 ~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~-------------g~~~~~~~~~~~~~~~l~~~l~~ 371 (425)
T 1vp4_A 307 Y--DLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEG-------------GLFIWLTLPEGFDTWEMFEYAKR 371 (425)
T ss_dssp S--CHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSB-------------SSEEEEECCTTCCTTTTHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCc-------------cEEEEEEcCCCCCHHHHHHHHHH
Confidence 2 334788999999999999999999875 3 344443433 3478888874 2556666777
Q ss_pred hCeeeeCCCCCCC---CCCeEEEEecC-ChHHHHHHHHHHHHHHhchhcc
Q 018172 309 ERIMARGGRRFGA---DAKYARVSMLS-REEIFNIFLERLSAIQGGSISN 354 (360)
Q Consensus 309 ~gI~~~pg~~f~~---~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~~~~ 354 (360)
+||.++||..|+. .++++|||++. +++++++++++|.+++.+..++
T Consensus 372 ~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~~~~~~ 421 (425)
T 1vp4_A 372 KKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKE 421 (425)
T ss_dssp HTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 7999999998853 36799999987 7999999999999999775543
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=297.13 Aligned_cols=294 Identities=17% Similarity=0.227 Sum_probs=232.3
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|++..|. ++||+++++++. ++..+.+ ++|++|+|+++++..+ ..++++||. |++++|+|.++...+
T Consensus 92 ~~y~~~~g~-----~~l~~~ia~~~~-~~~~~~~-~~i~~t~G~~~al~~l-~~l~~~gd~----Vl~~~p~y~~~~~~~ 159 (432)
T 3ei9_A 92 SGYGAEQGA-----KPLRAAIAKTFY-GGLGIGD-DDVFVSDGAKCDISRL-QVMFGSNVT----IAVQDPSYPAYVDSS 159 (432)
T ss_dssp CCCCCTTCC-----HHHHHHHHHHHH-TTTTCCG-GGEEEESCHHHHHHHH-HHHHCTTCC----EEEEESCCTHHHHHH
T ss_pred cCCCCCCCC-----HHHHHHHHHHHH-ccCCCCc-ceEEECCChHHHHHHH-HHHcCCCCE----EEEeCCCCHHHHHHH
Confidence 357777777 999999999985 3444444 5899999999999874 777889998 999999999999999
Q ss_pred HHhCC------------eeeeecCCcc-ccc----cCCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeec
Q 018172 105 DYLRS------------GLYKWDGDAN-TFD----KNNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 105 ~~~g~------------~~~~~~~~~~-~~~----~~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~a 163 (360)
+..|. +++.++.+.+ ++. ..+++++|++++||||||.+++ +.+.++|+++|+++|+||+
T Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea 239 (432)
T 3ei9_A 160 VIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSA 239 (432)
T ss_dssp HHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred HHcCCcccccccccccCceEEeccCcccCCcCChhhCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccc
Confidence 98884 5677776643 232 2467899999999999999998 2455678889999999999
Q ss_pred ccCCCC----CcC---CCCCCccEEEeccccccCCCCceEEEEeecCHHH--------HHHHHHHHhhccccCChHHHHH
Q 018172 164 YYWPQY----TPI---TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEV--------ARKMTRFIELGSIGVSKESQLR 228 (360)
Q Consensus 164 y~~~~~----~~~---~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~ 228 (360)
|.+..+ .++ .+..++++++.||||+||++|+|+||+++ ++++ .+.+.+.......+.+.++|.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 318 (432)
T 3ei9_A 240 YAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVI-PKKLLYSDGFPVAKDFNRIICTCFNGASNISQAG 318 (432)
T ss_dssp TGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEEC-CTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHH
T ss_pred hHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEE-ChHHhhcchHHHHHHHHHHhccccCCCCHHHHHH
Confidence 994311 122 22346789999999999999999999999 5665 7778777666667789999999
Q ss_pred HHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--h-HHHHHH
Q 018172 229 AAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--D-EDCEKL 305 (360)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~ 305 (360)
+.+++.. ....++++.++.++++++++.+.|+++ ++.+..+.++ +|+|+++++ . +.+..+
T Consensus 319 ~~~~l~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l 381 (432)
T 3ei9_A 319 ALACLTP---EGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGKNA-------------PYVWVHFPNQSSWDVFAEI 381 (432)
T ss_dssp HHHHSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEECSSS-------------SEEEEECTTSCHHHHHHHH
T ss_pred HHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHHHHC-CceecCCCcc-------------eEEEEECCCCCHHHHHHHH
Confidence 8887762 112678999999999999999999988 4444433333 378888873 2 455666
Q ss_pred HHhhCeeeeCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 306 LRAERIMARGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 306 l~~~gI~~~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
++++||.++||..|+. .++++|||++.++|++++++++|++--
T Consensus 382 l~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~rl~~~~ 425 (432)
T 3ei9_A 382 LEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQLY 425 (432)
T ss_dssp HHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence 6677999999999975 578999999789999999999998754
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=294.69 Aligned_cols=300 Identities=17% Similarity=0.192 Sum_probs=243.0
Q ss_pred ccccc-cCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH--HHHHhhcC--CC---------CCCCc
Q 018172 23 LMSYL-SDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQ--AALYALSS--PG---------GPEPI 88 (360)
Q Consensus 23 ~~~~y-~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~--~~~~~l~~--~g---------d~~~~ 88 (360)
....| ++..|. ++||++++++++. ++++|++|+|++++++ +++..+++ +| |+
T Consensus 61 ~~~~Yp~~~~g~-----~~lr~~ia~~~~~------~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~--- 126 (423)
T 3ez1_A 61 DLRNYPGGVAGL-----PSARALFAGYLDV------KAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPK--- 126 (423)
T ss_dssp ETTSSCSCTTCC-----HHHHHHHHHHTTS------CGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCE---
T ss_pred hhhCCCCCCCCh-----HHHHHHHHHHhCC------ChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCE---
Confidence 34678 788887 9999999999975 5569999999999998 88888887 74 66
Q ss_pred eEEEeCCCCCCcHHHHHHhCCeeeeecCCcccccc---------CCCeeEEEE-cCCCCCCcccchH----HHHHHh-hh
Q 018172 89 SVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFDK---------NNGAYIEVV-NSPNNPDGTIREA----VLAKVN-RS 153 (360)
Q Consensus 89 ~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~i~~-~~p~NPtG~~~~~----~~~~~~-~~ 153 (360)
|+++.|+|..+...++..|++++.++.+.++++. ++++++|++ ++||||||.+++. .+.++| ++
T Consensus 127 -Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~ 205 (423)
T 3ez1_A 127 -MIVTVPGYDRHFLLLQTLGFELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAA 205 (423)
T ss_dssp -EEEEESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSS
T ss_pred -EEEcCCCcHHHHHHHHHcCCEEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999876554432 467899865 5899999999993 455677 78
Q ss_pred cCcEEEEeecccCCCCC--------cCC------CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccc
Q 018172 154 AEGKLIHDLAYYWPQYT--------PIT------GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI 219 (360)
Q Consensus 154 ~~~~li~D~ay~~~~~~--------~~~------~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~ 219 (360)
+|+++|+||+|....+. +.. +..++++++.||||. +++|+|+||+++ ++++++.+.......+.
T Consensus 206 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~ 283 (423)
T 3ez1_A 206 PDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKI-TFAGAGLGFVAS-SEDNIRWLSKYLGAQSI 283 (423)
T ss_dssp TTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTT-SCSSSSCEEEEE-CHHHHHHHHHHHHHSCS
T ss_pred cCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhh-ccCCcceEEEEe-CHHHHHHHHHHHhhhcc
Confidence 99999999999842111 111 356789999999998 569999999999 89999999988887888
Q ss_pred cCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHh-cC----CcccCCCCCcccccccccCCCCCCcccc
Q 018172 220 GVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQ-SG----VFGLPEYPLEYCNFTGKFTNSHPGFAWL 294 (360)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (360)
+.+.+.|.++.++++.....+..++++.++.++++++.+.+.|.+ ++ ++.+..|.++ +|+|+
T Consensus 284 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g-------------~~~~~ 350 (423)
T 3ez1_A 284 GPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGG-------------YFISL 350 (423)
T ss_dssp CCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBS-------------SCEEE
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCcc-------------EEEEE
Confidence 999999999999888422344578889999999999998888865 22 2444444444 48888
Q ss_pred cCCc--hHHHHHHHHhhCeeeeC-CCCCCC----CCCeEEEEecC-ChHHHHHHHHHHHHHHhchh
Q 018172 295 ESKE--DEDCEKLLRAERIMARG-GRRFGA----DAKYARVSMLS-REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 295 ~~~~--~~~~~~~l~~~gI~~~p-g~~f~~----~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~~ 352 (360)
++++ .+.+.+.|+++||.++| |..|+. .++++|||++. +++++++++++|.+++.+..
T Consensus 351 ~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 351 DTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp EESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8874 37788899999999999 777752 46899999976 99999999999999997653
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=289.42 Aligned_cols=294 Identities=18% Similarity=0.242 Sum_probs=237.9
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. +++|+++++++.. .|.+++++.+|++|+|+++++..++..++++||+ |+++.|+|+.+...
T Consensus 61 ~~y~~~~g~-----~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~----vl~~~p~~~~~~~~ 131 (386)
T 1u08_A 61 NQYAPMTGV-----QALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDE----VICFDPSYDSYAPA 131 (386)
T ss_dssp CSCCCTTCC-----HHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCE----EEEEESCCTTHHHH
T ss_pred cCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCE----EEEeCCCchhHHHH
Confidence 468777777 9999999999753 3544444228999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCccc--ccc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC-
Q 018172 104 TDYLRSGLYKWDGDANT--FDK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY- 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~--~~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~- 169 (360)
++..|.+++.++.+.+. ++. ++++++|++++||||||.+++ +.+.++|+++|+++|+|++|.+..+
T Consensus 132 ~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~ 211 (386)
T 1u08_A 132 IALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFS 211 (386)
T ss_dssp HHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCC
T ss_pred HHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccC
Confidence 99999999998876432 211 367899999999999999997 4566788889999999999985221
Q ss_pred ----CcCCC---CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 170 ----TPITG---AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 170 ----~~~~~---~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
.++.. ..++++++.|+||.++++|+|+||+++ ++++++.+.......+++.+.+.|.++.++++.. +.
T Consensus 212 g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~~ 286 (386)
T 1u08_A 212 QQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVA-PAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE----PE 286 (386)
T ss_dssp SSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEEC-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC----TH
T ss_pred CCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEc-CHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC----cH
Confidence 22222 357899999999999999999999999 8999999988776667888999999998888743 27
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----hHHHHH-HHHhhCeeeeCC
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----DEDCEK-LLRAERIMARGG 316 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~l~~~gI~~~pg 316 (360)
++++.++.++++++++.+.|+++ ++.+..+.++ +|+|+++++ ...+.+ +++++||.++||
T Consensus 287 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g 352 (386)
T 1u08_A 287 HYLALPDFYRQKRDILVNALNES-RLEILPCEGT-------------YFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPL 352 (386)
T ss_dssp HHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBS-------------SEEEEECTTTCCSCHHHHHHHHHHHSCEECEEG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCce-------------EEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCc
Confidence 89999999999999999999887 4555444433 377887763 344555 445789999999
Q ss_pred CCCCC---CCCeEEEEecCChHHHHHHHHHHHH
Q 018172 317 RRFGA---DAKYARVSMLSREEIFNIFLERLSA 346 (360)
Q Consensus 317 ~~f~~---~~~~~R~s~~~~~e~~~~~~~~l~~ 346 (360)
..|+. .++++|||++.++|++++++++|++
T Consensus 353 ~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 353 SVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp GGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred hHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 88853 4679999998899999999999864
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-38 Score=292.29 Aligned_cols=290 Identities=13% Similarity=0.159 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
+++|++++++++ .++.++.+ ++|++|+|++++++.++..++++||+ |+++.|+|..+...++..|.+++.++.+
T Consensus 61 ~~lr~~la~~~~~~~~~~~~~-~~i~~t~g~~~a~~~~~~~~~~~gd~----vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 135 (377)
T 3fdb_A 61 SLLSQATAEFYADRYGYQARP-EWIFPIPDVVRGLYIAIDHFTPAQSK----VIVPTPAYPPFFHLLSATQREGIFIDAT 135 (377)
T ss_dssp CCHHHHHHHHHHHHHCCCCCG-GGEEEESCHHHHHHHHHHHHSCTTCC----EEEEESCCTHHHHHHHHHTCCEEEEECT
T ss_pred HHHHHHHHHHHHHHhCCCCCH-HHEEEeCChHHHHHHHHHHhcCCCCE----EEEcCCCcHhHHHHHHHcCCEEEEccCC
Confidence 699999999987 44555544 58999999999999999999999998 9999999999999999999999999876
Q ss_pred cccccc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC------CCcCCC--CCCc
Q 018172 118 ANTFDK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ------YTPITG--AADH 178 (360)
Q Consensus 118 ~~~~~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~------~~~~~~--~~~~ 178 (360)
.+ ++. +++++++++++||||||.+++ +.+.++|+++|+++|+|++|.+.. ..++.. ..++
T Consensus 136 ~~-~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 214 (377)
T 3fdb_A 136 GG-INLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASV 214 (377)
T ss_dssp TS-CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHH
T ss_pred CC-CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCc
Confidence 44 322 346899999999999999987 245567888999999999998522 122222 2467
Q ss_pred cEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 179 DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 179 ~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
++++.|+||.+|++|+|+||+++.++++++.+.......+.+.+.+.|.++.++++.. ..++++.++.++++++++
T Consensus 215 ~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~l 290 (377)
T 3fdb_A 215 CITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG----TDFLNQEVAYLKNNHDFL 290 (377)
T ss_dssp EEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999988767899999988776667889999999988888732 378999999999999999
Q ss_pred HHHHHh-cCCcccCCCCCcccccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeCCCCCCC-CCCeEEEEecC
Q 018172 259 RQVIRQ-SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARGGRRFGA-DAKYARVSMLS 332 (360)
Q Consensus 259 ~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~pg~~f~~-~~~~~R~s~~~ 332 (360)
.+.|++ ++++.+..+.+++ ++|++++.. +.+..+++++||.++||..|+. .++++|+|++.
T Consensus 291 ~~~L~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~ 357 (377)
T 3fdb_A 291 LHEIPKRIPGAKITPMQATY-------------LMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT 357 (377)
T ss_dssp HHHHHHHSTTCEECCCSBCS-------------EEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS
T ss_pred HHHHHhhCCCceEecCCeeE-------------EEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC
Confidence 999988 6666666555544 557777642 5566666667999999998875 47899999988
Q ss_pred ChHHHHHHHHHHHHHHhch
Q 018172 333 REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 333 ~~e~~~~~~~~l~~~~~~~ 351 (360)
++|++++++++|.+++.+.
T Consensus 358 ~~e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 358 SREVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhhc
Confidence 9999999999999998753
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=290.86 Aligned_cols=296 Identities=20% Similarity=0.255 Sum_probs=240.2
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
+.|++..|. ++||++++++++. ++++|++|+|+++++..++..++++||+ |++++|+|..+...+
T Consensus 55 ~~y~~~~~~-----~~l~~~la~~~~~------~~~~v~~~~g~~~a~~~~~~~~~~~gd~----Vl~~~~~~~~~~~~~ 119 (381)
T 1v2d_A 55 DQYAPPAGL-----PALREALAEEFAV------EPESVVVTSGATEALYVLLQSLVGPGDE----VVVLEPFFDVYLPDA 119 (381)
T ss_dssp CSCCCTTCC-----HHHHHHHHHHHTS------CGGGEEEESSHHHHHHHHHHHHCCTTCE----EEEEESCCTTHHHHH
T ss_pred cCCCCCCCC-----HHHHHHHHHhcCC------ChhhEEEcCChHHHHHHHHHHhCCCCCE----EEEcCCCchhHHHHH
Confidence 468877776 9999999999885 4568999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCC--cc-------cccc--CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC
Q 018172 105 DYLRSGLYKWDGD--AN-------TFDK--NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 105 ~~~g~~~~~~~~~--~~-------~~~~--~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
+..|++++.++.+ .+ .+.. ++++++|++++||||||.+++ +.+.++|+++|+++|+|++|.+..+
T Consensus 120 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~ 199 (381)
T 1v2d_A 120 FLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY 199 (381)
T ss_dssp HHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS
T ss_pred HHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc
Confidence 9999999988875 12 2211 357899999999999999987 3566788889999999999985422
Q ss_pred ----CcCCC-CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHH
Q 018172 170 ----TPITG-AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFF 244 (360)
Q Consensus 170 ----~~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (360)
.++.. ..++++++.|+||.++++|+|+||+++ ++++++.+.......+++.+.+.|.++.++++... ++.++
T Consensus 200 g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~ 276 (381)
T 1v2d_A 200 GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVG-PKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR--REGFY 276 (381)
T ss_dssp SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEEC-CTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH--HTTHH
T ss_pred CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEe-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcc--cHHHH
Confidence 11111 457899999999999999999999999 78888988877766678889999999988887431 12788
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCC---
Q 018172 245 EYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGA--- 321 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~--- 321 (360)
++.+++++++++++.+.|++. ++.+..+.++ +|+|+++++.+ +.++|.++||.++||..|+.
T Consensus 277 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-------------~~~~~~~~~~~-~~~~l~~~gi~v~~g~~~~~~~~ 341 (381)
T 1v2d_A 277 EALREGYRRRRDLLAGGLRAM-GLRVYVPEGT-------------YFLMAELPGWD-AFRLVEEARVALIPASAFYLEDP 341 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCEECCSBS-------------SEEEEECTTCC-HHHHHHHTCEECEEGGGGCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCEecCCCcc-------------eEEEEecChHh-HHHHHHhCCEEEecchHhCCCCC
Confidence 999999999999999999986 4554444333 37788876534 78888999999999998864
Q ss_pred CCCeEEEEecCChHHHHHHHHHHHHHHhchhc
Q 018172 322 DAKYARVSMLSREEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 322 ~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~~ 353 (360)
..+++|++++.++|++++++++|.+++++.+.
T Consensus 342 ~~~~iRi~~~~~~~~i~~~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 342 PKDLFRFAFCKTEEELHLALERLGRVVNSPRE 373 (381)
T ss_dssp CTTEEEEECCSCHHHHHHHHHHHHHHC-----
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHHHHhhccc
Confidence 46799999988999999999999999987653
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=292.59 Aligned_cols=303 Identities=15% Similarity=0.176 Sum_probs=242.1
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|++..|. +++|+++++++.. .|.++.++.+|++|+|+++++..++..++++||+ |+++.|+|..+..
T Consensus 70 ~~~y~~~~g~-----~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~----Vl~~~p~y~~~~~ 140 (429)
T 1yiz_A 70 ANQYTRGFGH-----PRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDE----VIIIEPFFDCYEP 140 (429)
T ss_dssp GGSCCCSSCC-----HHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCTTHHH
T ss_pred ccCCCCCCCc-----HHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCE----EEEcCCCchhHHH
Confidence 3468877777 9999999999753 3444444228999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcc---------c--ccc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEE
Q 018172 103 ETDYLRSGLYKWDGDAN---------T--FDK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIH 160 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~---------~--~~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~ 160 (360)
.++..|.+++.++.+.+ . ++. ++++++|++++||||||.+++ +.+.++|+++|+++|+
T Consensus 141 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 220 (429)
T 1yiz_A 141 MVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVS 220 (429)
T ss_dssp HHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 99999999998887643 1 221 357899999999999999997 3566788889999999
Q ss_pred eecccCCC-----CCcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHH
Q 018172 161 DLAYYWPQ-----YTPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKI 232 (360)
Q Consensus 161 D~ay~~~~-----~~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 232 (360)
||+|.+.. ..++. ...++++++.|+||.++++|+|+||+++ ++++++.+.......+++.+.+.|.++.++
T Consensus 221 De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 299 (429)
T 1yiz_A 221 DEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYG-PEALLKNLQMVHQNCVYTCATPIQEAIAVG 299 (429)
T ss_dssp ECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEES-CHHHHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred eccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEe-CHHHHHHHHHHHhhcccCCChHHHHHHHHH
Confidence 99998522 12222 2457899999999999999999999999 799999998877767788999999999988
Q ss_pred hcccC---CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----------
Q 018172 233 LGIVS---DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----------- 298 (360)
Q Consensus 233 l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 298 (360)
++... ..++.++++.++.++++++++.+.|+++ ++.+..+.+++ |+|+++++
T Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~ 365 (429)
T 1yiz_A 300 FETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGY-------------FMVADWSSLDSKVDLTQET 365 (429)
T ss_dssp HHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSS-------------EEEEECCSSCTTTTCCSSS
T ss_pred HhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcce-------------EEEEEcccccccccccccc
Confidence 87510 1123789999999999999999999988 44544444433 67777653
Q ss_pred ---h-HHHHH-HHHhhCeeeeCCCCCCC------CCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 299 ---D-EDCEK-LLRAERIMARGGRRFGA------DAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 299 ---~-~~~~~-~l~~~gI~~~pg~~f~~------~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
. ..+.+ +++++||.++||..|+. ..+++||+++.+++++++++++|.+++++
T Consensus 366 ~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 366 DARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKGS 428 (429)
T ss_dssp SSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHHHHHHHHHHSCC
T ss_pred cCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHHHHHHHHHhccC
Confidence 2 34455 44588999999988863 16799999988999999999999998754
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=292.31 Aligned_cols=301 Identities=16% Similarity=0.184 Sum_probs=236.3
Q ss_pred ccccCCCCccccccHHHHHHHHHHHh-------hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCC
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHH-------VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYY 97 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~-------~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~ 97 (360)
..|++..|. +++|++++++++ ..|.++.+ ++|++|+|+++++..++..++++||+ |+++.|+|
T Consensus 69 ~~y~~~~~~-----~~lr~~la~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~al~~~~~~l~~~gd~----vl~~~p~y 138 (416)
T 1bw0_A 69 NGYFPTVGS-----PEAREAVATWWRNSFVHKEELKSTIVK-DNVVLCSGGSHGILMAITAICDAGDY----ALVPQPGF 138 (416)
T ss_dssp SSCCCTTCC-----HHHHHHHHHHHHHHHCCSTTTGGGCCG-GGEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCC
T ss_pred CCcCCCCCC-----HHHHHHHHHHHHhhhcccccCCCCCCc-ceEEEeCChHHHHHHHHHHhCCCCCE----EEEcCCCc
Confidence 457776776 999999999998 55555555 58999999999999999999999998 99999999
Q ss_pred CCcHHHHHHhCCeeeeecCCcc-cc--cc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeec
Q 018172 98 SQYPAETDYLRSGLYKWDGDAN-TF--DK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 98 ~~~~~~~~~~g~~~~~~~~~~~-~~--~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~a 163 (360)
..+...++..|++++.++.+.+ ++ +. +++++++++++|+||||.+++ +.+.++|+++|+++|+|++
T Consensus 139 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~ 218 (416)
T 1bw0_A 139 PHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEI 218 (416)
T ss_dssp THHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred HhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 9999999999999998876533 22 11 357899999999999999998 3566788889999999999
Q ss_pred ccCCC---------CCcCC--CCCCccEEEeccccccCCCCceEEEEeecCH-----HHHHHHHHHHhhccccCChHHHH
Q 018172 164 YYWPQ---------YTPIT--GAADHDIMLFTLSKCTGHAGSRIGWALVKDT-----EVARKMTRFIELGSIGVSKESQL 227 (360)
Q Consensus 164 y~~~~---------~~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~ 227 (360)
|.+.. ..++. ...+++++++|+||.|+++|+|+||++++++ .+.+.+..... .+++.|.+.|.
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 297 (416)
T 1bw0_A 219 YAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGM-LVCGPCTVVQA 297 (416)
T ss_dssp TTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHH-HHTCSCHHHHH
T ss_pred ccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhc-cccCCCcHHHH
Confidence 98621 22222 2234578999999999999999999998554 23333333321 35678899999
Q ss_pred HHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--------ch
Q 018172 228 RAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------ED 299 (360)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 299 (360)
++.++++... +.++++.+++++++++++.+.|++++++.+..+.+++ |+|+.++ +.
T Consensus 298 a~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 361 (416)
T 1bw0_A 298 ALGEALLNTP---QEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAM-------------YLMSRIDLEKYRDIKTD 361 (416)
T ss_dssp HHHHHHHSSC---HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTT-------------EEEEEECGGGBSSCCSH
T ss_pred HHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeE-------------EEEEeCCHHHcCCCCCH
Confidence 9999887432 3789999999999999999999988666554444333 6676654 23
Q ss_pred HHHHH-HHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhchhc
Q 018172 300 EDCEK-LLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 300 ~~~~~-~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~~ 353 (360)
..+.+ +++++||.++||..|+. ++++|++++.++|++++++++|.+++++.++
T Consensus 362 ~~~~~~l~~~~gi~v~~g~~f~~-~~~iRis~~~~~e~l~~~l~~l~~~l~~~~~ 415 (416)
T 1bw0_A 362 VEFFEKLLEEENVQVLPGTIFHA-PGFTRLTTTRPVEVYREAVERIKAFCQRHAA 415 (416)
T ss_dssp HHHHHHHHHHHCEECEEGGGGTC-TTEEEEECCSCHHHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHHHCCEEEecccccCC-CCeEEEEecCCHHHHHHHHHHHHHHHHHhhc
Confidence 44444 45789999999998875 6799999977999999999999999976543
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=287.81 Aligned_cols=300 Identities=17% Similarity=0.245 Sum_probs=243.3
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. .++|++++++++. .|.++.+ ++|++|+|+++++..++..++++||+ |+++.|+|..+...
T Consensus 73 ~~y~~~~g~-----~~l~~~la~~~~~~~g~~~~~-~~v~~~~g~t~a~~~~~~~~~~~gd~----Vl~~~~~~~~~~~~ 142 (409)
T 2gb3_A 73 VYYSHSAGI-----WELREAFASYYKRRQRVDVKP-ENVLVTNGGSEAILFSFAVIANPGDE----ILVLEPFYANYNAF 142 (409)
T ss_dssp CCCCCTTCC-----HHHHHHHHHHHHHTSCCCCCG-GGEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCTHHHHH
T ss_pred CCCCCCCCc-----HHHHHHHHHHHHHHhCCCCCH-HHEEEeCCHHHHHHHHHHHhCCCCCE----EEEcCCCchhHHHH
Confidence 357777777 9999999999875 4555554 58999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCc-cccc------c--CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC-
Q 018172 104 TDYLRSGLYKWDGDA-NTFD------K--NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY- 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~-~~~~------~--~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~- 169 (360)
++..|.+++.++.+. +++. . ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|.+..+
T Consensus 143 ~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~ 222 (409)
T 2gb3_A 143 AKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFR 222 (409)
T ss_dssp HHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCS
T ss_pred HHHcCCEEEEeccCCCCCCccHHHHHHhhCcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccC
Confidence 999999999998764 2322 1 357899999999999999987 4566788889999999999986322
Q ss_pred ---Cc-CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHH
Q 018172 170 ---TP-ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFE 245 (360)
Q Consensus 170 ---~~-~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (360)
.+ +.+..+++++++|+||.+|++|+|+||++++++++++.+........ +.+.+.|.++.++++. . ..+++
T Consensus 223 ~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~--~--~~~~~ 297 (409)
T 2gb3_A 223 GEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNL--D--DSFFD 297 (409)
T ss_dssp SCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTC--C--HHHHH
T ss_pred CCCCCccccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhc--c--HHHHH
Confidence 12 22235679999999999999999999999944489999988776665 8899999999888863 2 37899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccc-CCCCCcccccccccCCCCCCcccccCC--chHHHHHHHHhh------CeeeeCC
Q 018172 246 YGRRLMSERWNMLRQVIRQSGVFGL-PEYPLEYCNFTGKFTNSHPGFAWLESK--EDEDCEKLLRAE------RIMARGG 316 (360)
Q Consensus 246 ~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~------gI~~~pg 316 (360)
+.++.++++++++.+.|+++ ++.+ ..+.+++ |+|++++ +...+.+.|.++ ||.++||
T Consensus 298 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g 363 (409)
T 2gb3_A 298 FVRETYRERVETVLKKLEEH-GLKRFTKPSGAF-------------YITAELPVEDAEEFARWMLTDFNMDGETTMVAPL 363 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSS-------------EEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEG
T ss_pred HHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeE-------------EEEEEeCCCCHHHHHHHHHhccccccCcEEEeCc
Confidence 99999999999999999988 5555 4444433 6677765 335566666655 9999999
Q ss_pred CCCCC----CCCeEEEEecCChHHHHHHHHHHHHHHhchhc
Q 018172 317 RRFGA----DAKYARVSMLSREEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 317 ~~f~~----~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~~ 353 (360)
..|+. .++++|++++.++|++++++++|++++++.++
T Consensus 364 ~~f~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~ 404 (409)
T 2gb3_A 364 RGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFCS 404 (409)
T ss_dssp GGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhCCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhhh
Confidence 88863 36799999988999999999999999977543
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=292.11 Aligned_cols=301 Identities=18% Similarity=0.230 Sum_probs=240.4
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
...|++..|. +++|++++++++. +|.++.++++|++|+|+++++..++..++++||+ |+++.|+|..+..
T Consensus 55 ~~~y~~~~g~-----~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~----Vl~~~~~y~~~~~ 125 (411)
T 2o0r_A 55 VNQYPPGPGS-----APLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSE----VLLIEPFYDSYSP 125 (411)
T ss_dssp CCSCCCTTCC-----HHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCE----EEEEESCCTTHHH
T ss_pred CCCCCCCCCC-----HHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCE----EEEeCCCcHhHHH
Confidence 3468877777 9999999999753 3555444328999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcc--c-------ccc--CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCC
Q 018172 103 ETDYLRSGLYKWDGDAN--T-------FDK--NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWP 167 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~--~-------~~~--~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~ 167 (360)
.++..|.+++.++.+.+ + ++. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|.+.
T Consensus 126 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 205 (411)
T 2o0r_A 126 VVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHL 205 (411)
T ss_dssp HHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC
T ss_pred HHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 99999999998876543 2 111 357899999999999999988 45677888899999999999853
Q ss_pred CC-----CcCCC---CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCC
Q 018172 168 QY-----TPITG---AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 168 ~~-----~~~~~---~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
.+ .++.. ..++++++.|+||.++++|+|+||+++ ++++++.+.......+++.+.+.|.++.++++..
T Consensus 206 ~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--- 281 (411)
T 2o0r_A 206 VFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACG-PAELIAGVRAAKQYLSYVGGAPFQPAVALALDTE--- 281 (411)
T ss_dssp BCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEEC-CHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC---
T ss_pred ccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEee-CHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCC---
Confidence 22 22222 256799999999999999999999999 8999999988776667788889999888888732
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----hHHHHH-HHHhhCeee
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----DEDCEK-LLRAERIMA 313 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~l~~~gI~~ 313 (360)
+.++++.++.++++++++.+.|+++ ++.+..+.+++ |+|+++++ ...+.+ +++++||.+
T Consensus 282 -~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~l~~~~gi~v 346 (411)
T 2o0r_A 282 -DAWVAALRNSLRARRDRLAAGLTEI-GFAVHDSYGTY-------------FLCADPRPLGYDDSTEFCAALPEKVGVAA 346 (411)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCBSS-------------EEEEECGGGTCCCHHHHHHHHHHHHSEEC
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHc-CCEecCCCeeE-------------EEEEecCCCCCCCHHHHHHHHHHhCCEEE
Confidence 3789999999999999999999987 45554444333 67777753 344544 555789999
Q ss_pred eCCCCC-CC-----------CCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 314 RGGRRF-GA-----------DAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 314 ~pg~~f-~~-----------~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
+||..| +. .++++||+++.++|++++++++|.+++++.+
T Consensus 347 ~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~~~~~~ 397 (411)
T 2o0r_A 347 IPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAERPA 397 (411)
T ss_dssp EEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHHHHGGGGC---
T ss_pred cChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHHHHHHHHhccC
Confidence 999888 32 2578999998799999999999999887643
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-37 Score=281.65 Aligned_cols=283 Identities=17% Similarity=0.185 Sum_probs=229.8
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
.++|+ ..|. ++||++++++++. ++++|++|+|+++++..++..+ +||+ |+++.|+|..+...
T Consensus 45 ~~~y~-~~~~-----~~lr~~la~~~~~------~~~~i~~t~G~~~~l~~~~~~~--~gd~----vl~~~p~~~~~~~~ 106 (337)
T 3p1t_A 45 INRYP-FDAE-----PRVMRKLAEHFSC------PEDNLMLVRGIDECFDRISAEF--SSMR----FVTAWPGFDGYRAR 106 (337)
T ss_dssp TTSCC-TTHH-----HHHHHHHHHHHTS------CGGGEEEESHHHHHHHHHHHHS--TTSE----EEEESSSCSHHHHH
T ss_pred hccCC-CCch-----HHHHHHHHHHhCc------CHHHEEEeCCHHHHHHHHHHhc--CCCe----EEEeCCCcHHHHHH
Confidence 34564 3455 9999999999986 5569999999999999999988 7888 99999999999999
Q ss_pred HHHhCCeeeeecCCcc-cc-----ccCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC--CCcCCC
Q 018172 104 TDYLRSGLYKWDGDAN-TF-----DKNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ--YTPITG 174 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~-~~-----~~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~--~~~~~~ 174 (360)
++..|++++.++.+.+ ++ ....+++++++++||||||.+++ +.+.+++++++. +|+||+|.+.. ......
T Consensus 107 ~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~ 185 (337)
T 3p1t_A 107 IAVSGLRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLA 185 (337)
T ss_dssp HTTSCCEEEEECBCTTSSBCHHHHTTCCTTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCC
T ss_pred HHHcCCEEEEecCCCCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccc
Confidence 9999999999987643 22 22357899999999999999999 677788887886 56699998422 122234
Q ss_pred CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHH
Q 018172 175 AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSER 254 (360)
Q Consensus 175 ~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 254 (360)
..+++++++|+||.+|++|+|+||+++ ++++++.+.+.. ...+.+.+.|.++.++++. . .++++.++++.++
T Consensus 186 ~~~~~i~~~S~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~---~--~~~~~~~~~~~~~ 257 (337)
T 3p1t_A 186 YGENELVFRSFSKSYGLAGLRLGALFG-PSELIAAMKRKQ--WFCNVGTLDLHALEAALDN---D--RAREAHIAKTLAQ 257 (337)
T ss_dssp CBTTEEEEEESSSTTCCTTTCCEEEEC-CHHHHHHHHTTS--CTTCSCHHHHHHHHHHHTC---H--HHHHHHHHHHHHH
T ss_pred cCCCEEEEeeCchhccCcchheEEEEe-CHHHHHHHHhhc--CCCCCCHHHHHHHHHHhCC---H--HHHHHHHHHHHHH
Confidence 567889999999999999999999998 899999887754 4567888999998888872 1 5677777888888
Q ss_pred HHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCCh
Q 018172 255 WNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSRE 334 (360)
Q Consensus 255 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~ 334 (360)
++++.+.|+++ ++.+..+ .++|+|+..++.+.+.+.|+++||.++||..|+. ++++|+|++ ++
T Consensus 258 ~~~l~~~L~~~-g~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~-~~~iRis~~-~~ 320 (337)
T 3p1t_A 258 RRRVADALRGL-GYRVASS--------------EANFVLVENAAGERTLRFLRERGIQVKDAGQFGL-HHHIRISIG-RE 320 (337)
T ss_dssp HHHHHHHHHHT-TCCBCCC--------------SSSEEEEECTTTHHHHHHHHHTTEECEEGGGGTC-CSEEEEECC-CH
T ss_pred HHHHHHHHHHC-cCEECCC--------------CCeEEEEEcCCHHHHHHHHHHCCeEEEECccCCC-CCeEEEecC-CH
Confidence 99999999988 4444333 3346777777667788889999999999999986 789999995 78
Q ss_pred HHHHHHHHHHHHHHhc
Q 018172 335 EIFNIFLERLSAIQGG 350 (360)
Q Consensus 335 e~~~~~~~~l~~~~~~ 350 (360)
+++++++++|+++++.
T Consensus 321 ~~~~~l~~al~~~~~~ 336 (337)
T 3p1t_A 321 EDNDRLLAALAEYSDH 336 (337)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999988653
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=293.75 Aligned_cols=301 Identities=16% Similarity=0.182 Sum_probs=245.0
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhc--CCCC--CCCceEEEeCCCCCC
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALS--SPGG--PEPISVVSAAPYYSQ 99 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~--~~gd--~~~~~vl~~~p~~~~ 99 (360)
..|++..|. +++|++++++++. +|.++++ ++|++|+|++++++.++..++ ++|| + |+++.|+|..
T Consensus 76 ~~y~~~~g~-----~~lr~~la~~~~~~~g~~~~~-~~i~~t~g~t~al~~~~~~l~~~~~gd~~~----Vl~~~p~~~~ 145 (437)
T 3g0t_A 76 SIYPNLDGL-----PELKQEASRFAKLFVNIDIPA-RACVPTVGSMQGCFVSFLVANRTHKNREYG----TLFIDPGFNL 145 (437)
T ss_dssp GSCCCTTCC-----HHHHHHHHHHHHHHHCCCCCG-GGEEEESHHHHHHHHHHHHHTTSCTTCSCC----EEEEESCCHH
T ss_pred cCCCCCCCh-----HHHHHHHHHHHHHhhCCCCCc-ccEEEeCCHHHHHHHHHHHHhcCCCCCccE----EEEeCCCcHh
Confidence 568888887 9999999999874 4555555 589999999999999999998 9999 8 9999999999
Q ss_pred cHHHHHHhCCeeeeecCCcccccc----------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeeccc
Q 018172 100 YPAETDYLRSGLYKWDGDANTFDK----------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYY 165 (360)
Q Consensus 100 ~~~~~~~~g~~~~~~~~~~~~~~~----------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~ 165 (360)
+...++..|++++.++.+.+++.. ++++++|++++||||||.+++ +.+.++|+++|+++|+|++|.
T Consensus 146 ~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~ 225 (437)
T 3g0t_A 146 NKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYF 225 (437)
T ss_dssp HHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchh
Confidence 999999999999999876444311 467899999999999999987 245678888999999999998
Q ss_pred CCCC---C----------cCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHH-H-----------------HHHHH
Q 018172 166 WPQY---T----------PITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVAR-K-----------------MTRFI 214 (360)
Q Consensus 166 ~~~~---~----------~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~-~-----------------l~~~~ 214 (360)
+..+ . .+....++++++.|+||.++++|+|+||+++ ++++++ . +....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (437)
T 3g0t_A 226 GMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMI-SGKLYEREYPDLEESFGRLRFGEALSSSAL 304 (437)
T ss_dssp TCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEE-CHHHHHCBCGGGHHHHSCSBHHHHHHTTHH
T ss_pred hcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEE-CHHHhhhhhhcccccccccchhHHHHHHHH
Confidence 5221 1 1112477889999999999999999999999 788888 7 77666
Q ss_pred hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccC------CCCCcccccccccCCCC
Q 018172 215 ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLP------EYPLEYCNFTGKFTNSH 288 (360)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~ 288 (360)
.....+.+.+.|.++.++++... .++.++++.+++++++++++.+.|+++ ++.+. .+. ..
T Consensus 305 ~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~------------~~ 370 (437)
T 3g0t_A 305 YALSSGATHSAQWGMAAMLKACN-DGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPL------------AD 370 (437)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHH-TTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEEC------------CS
T ss_pred hhhcCCCCHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCC------------ce
Confidence 66678899999999999887421 112338999999999999999999998 45544 120 23
Q ss_pred CCcccccCC--chHHHHHHHHhhCeeeeCCCCCCCCC-CeEEEEecC-ChHHHHHHHHHHHHHHhc
Q 018172 289 PGFAWLESK--EDEDCEKLLRAERIMARGGRRFGADA-KYARVSMLS-REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 289 ~~~~~~~~~--~~~~~~~~l~~~gI~~~pg~~f~~~~-~~~R~s~~~-~~e~~~~~~~~l~~~~~~ 350 (360)
++|+|++++ +...+.+.|.++||.++||..|+... +++|+|++. +++++++++++|++++++
T Consensus 371 ~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 371 GFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp SSEEEEEETTCCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 347888876 33777788888999999999887643 799999987 999999999999998753
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=284.49 Aligned_cols=282 Identities=18% Similarity=0.214 Sum_probs=232.5
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|++..+ +++|++++++++. ++++|++|+|+++++..++..++++||+ |+++.|+|..+...+
T Consensus 60 ~~y~~~~~------~~lr~~la~~~~~------~~~~v~~~~g~~~a~~~~~~~l~~~gd~----vl~~~~~~~~~~~~~ 123 (365)
T 3get_A 60 HLYPDDSM------IELKSTLAQKYKV------QNENIIIGAGSDQVIEFAIHSKLNSKNA----FLQAGVTFAMYEIYA 123 (365)
T ss_dssp TSCCCTTC------HHHHHHHHHHHTC------CGGGEEEESSHHHHHHHHHHHHCCTTCE----EEECSSCCTHHHHHH
T ss_pred ccCCCCCh------HHHHHHHHHHhCC------CcceEEECCCHHHHHHHHHHHHhCCCCE----EEEeCCChHHHHHHH
Confidence 45665543 8999999999985 5569999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecC-Ccccccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhh--hcCcEEEEeecccCCC---C-
Q 018172 105 DYLRSGLYKWDG-DANTFDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNR--SAEGKLIHDLAYYWPQ---Y- 169 (360)
Q Consensus 105 ~~~g~~~~~~~~-~~~~~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~--~~~~~li~D~ay~~~~---~- 169 (360)
+..|++++.++. +.+.++. ++++++|++++||||||.+++ +.+.++++ ++|+++|+|++|.+.. .
T Consensus 124 ~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~ 203 (365)
T 3get_A 124 KQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDS 203 (365)
T ss_dssp HHHTCEEEECSSSSCCHHHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCG
T ss_pred HHcCCEEEEEecCCCCCCCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCC
Confidence 999999999986 2222211 468999999999999999998 44554444 4799999999998322 1
Q ss_pred ---CcC---CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 170 ---TPI---TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 170 ---~~~---~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
.+. .+..+++++++|+||.+|++|+|+||+++ ++++++.+..... .++.|.+.|.++.++++ .. .+
T Consensus 204 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~---~~--~~ 275 (365)
T 3get_A 204 KKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA-NANIISAFYKLRA--PFNVSNLALKAAVAAMD---DD--EF 275 (365)
T ss_dssp GGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE-CHHHHHHHHHHSC--TTCSCHHHHHHHHHHHT---CH--HH
T ss_pred cccccHhHHhccCCCEEEEeecchHhcCcchheEEEEc-CHHHHHHHHHhcC--CCCcCHHHHHHHHHHhC---CH--HH
Confidence 111 13457889999999999999999999999 8999999988765 35789999999999887 22 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRRFGA 321 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~f~~ 321 (360)
+++.+++++++++++.+.|+++ ++.+.. +.++|+|+++++ ...+.+.|.++||.++||..|+
T Consensus 276 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~- 339 (365)
T 3get_A 276 TEKTLENNFSQMELYKEFAKKH-NIKIID--------------SYTNFITYFFDEKNSTDLSEKLLKKGIIIRNLKSYG- 339 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCEECC--------------CSSSEEEEECSSSCHHHHHHHHHTTTEECEECGGGT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCEECC--------------CCCeEEEEECCCCCHHHHHHHHHHCCEEEEECccCC-
Confidence 9999999999999999999988 444332 234478888875 3777888888999999999888
Q ss_pred CCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 322 DAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 322 ~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
++++|++++ +++++++++++|++++
T Consensus 340 -~~~iRis~~-~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 340 -LNAIRITIG-TSYENEKFFTEFDKIL 364 (365)
T ss_dssp -CSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 789999995 8999999999999876
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=288.00 Aligned_cols=294 Identities=18% Similarity=0.147 Sum_probs=238.5
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|++..|. .++|++++++++. ++++|++|+|+++++..++..++++||+ |+++.|+|..+...+
T Consensus 68 ~~y~~~~~~-----~~l~~~la~~~g~------~~~~v~~~~g~~~al~~~~~~~~~~gd~----Vl~~~p~y~~~~~~~ 132 (397)
T 2zyj_A 68 LQYSPTEGY-----APLRAFVAEWIGV------RPEEVLITTGSQQALDLVGKVFLDEGSP----VLLEAPSYMGAIQAF 132 (397)
T ss_dssp TSCCCTTCC-----HHHHHHHHHHHTS------CGGGEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCHHHHHHH
T ss_pred hCCCCCCCC-----HHHHHHHHHHhCC------ChhhEEEeccHHHHHHHHHHHhCCCCCE----EEEeCCCcHHHHHHH
Confidence 457776776 9999999999963 4568999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCCcccccc-------C-CCeeEE-EEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCC--
Q 018172 105 DYLRSGLYKWDGDANTFDK-------N-NGAYIE-VVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQY-- 169 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~~-------~-~~~~~i-~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~-- 169 (360)
+..|.+++.++.+.++++. + .++++| ++++||||||.+++. .+.++|+++|+++|+||+|.+..+
T Consensus 133 ~~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g 212 (397)
T 2zyj_A 133 RLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGE 212 (397)
T ss_dssp HTTCCEEEEEEEETTEECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSS
T ss_pred HHcCCEEEecCcCCCCCCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCC
Confidence 9999999988865443322 1 367887 579999999999883 566788889999999999986432
Q ss_pred ---CcCC--CCC---CccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCch
Q 018172 170 ---TPIT--GAA---DHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 170 ---~~~~--~~~---~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
.++. +.. ++++++.|+||.++ +|+|+||+++ ++++++.+........++.|.+.|.++.++++. ..+
T Consensus 213 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~--~~~- 287 (397)
T 2zyj_A 213 ARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVA-HPEALQKLVQAKQGADLHTPMLNQMLVHELLKE--GFS- 287 (397)
T ss_dssp CCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEEC-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTT--THH-
T ss_pred CCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEec-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh--CCH-
Confidence 1111 112 67899999999999 9999999999 799999998777666677899999999888872 222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-C-CcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQS-G-VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGG 316 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg 316 (360)
+++++.++.++++++++.+.|+++ + ++.+..|.++ +|+|+++++ ...+.+.|.++||.+.||
T Consensus 288 ~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g 354 (397)
T 2zyj_A 288 ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGG-------------MFVWMELPKGLSAEGLFRRALEENVAFVPG 354 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBS-------------SEEEEECSTTCCHHHHHHHHHHTTEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCcc-------------EEEEEEcCCCCCHHHHHHHHHHCCCEEech
Confidence 678899999999999999999874 4 3554444433 478888864 366777777889999999
Q ss_pred CCCCC---CCCeEEEEecC-ChHHHHHHHHHHHHHHhch
Q 018172 317 RRFGA---DAKYARVSMLS-REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 317 ~~f~~---~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~ 351 (360)
..|+. .++++||+++. ++|++++++++|.+++++.
T Consensus 355 ~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 393 (397)
T 2zyj_A 355 GPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKGL 393 (397)
T ss_dssp GGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 98853 36799999987 7999999999999998654
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=281.31 Aligned_cols=279 Identities=19% Similarity=0.227 Sum_probs=231.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCc
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDA 118 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~ 118 (360)
+++|++++++++. ++++|++|+|+++++..++..++++||+ |+++.|+|..+...++..|++++.++.+.
T Consensus 68 ~~lr~~la~~~g~------~~~~i~~t~g~~~al~~~~~~l~~~gd~----Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~ 137 (360)
T 3hdo_A 68 QKLREVAGELYGF------DPSWIIMANGSDEVLNNLIRAFAAEGEE----IGYVHPSYSYYGTLAEVQGARVRTFGLTG 137 (360)
T ss_dssp HHHHHHHHHHHTC------CGGGEEEESSHHHHHHHHHHHHCCTTCE----EEEESSSCTHHHHHHHHHTCEEEEECBCT
T ss_pred HHHHHHHHHHhCc------CcceEEEcCCHHHHHHHHHHHHhCCCCE----EEEcCCChHHHHHHHHHCCCEEEEeeCCC
Confidence 9999999999984 4569999999999999999999999998 99999999999999999999999998764
Q ss_pred c----ccccCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC---CCcCCCCCCccEEEeccccccC
Q 018172 119 N----TFDKNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ---YTPITGAADHDIMLFTLSKCTG 190 (360)
Q Consensus 119 ~----~~~~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~---~~~~~~~~~~~i~~~S~sK~~~ 190 (360)
+ .+....+++++++++|+||||.+++ +.+.++|+++|+++|+|++|.+.. ........++++++.|+||.++
T Consensus 138 ~~~~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g 217 (360)
T 3hdo_A 138 DFRIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYS 217 (360)
T ss_dssp TSSBTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTS
T ss_pred CCCHHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhc
Confidence 3 2222345789999999999999999 677888998999999999998521 1122235678899999999999
Q ss_pred CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 018172 191 HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGL 270 (360)
Q Consensus 191 ~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 270 (360)
++|+|+||+++ ++++++.+..... .++.|.+.|.++.++++. ..++++.+++++++++++.+.|+++ ++.+
T Consensus 218 ~~G~r~G~~~~-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~ 288 (360)
T 3hdo_A 218 LAGMRIGLAIA-RPEVIAALDKIRD--HYNLDRLAQAACVAALRD-----QAYLSECCRRIRETREWFTTELRSI-GYDV 288 (360)
T ss_dssp CTTSCCEEEEC-CHHHHHHHHHHSC--SCCSCHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred CCccceeeEee-CHHHHHHHHHhCC--CCCCCHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEE
Confidence 99999999999 8999999988764 468899999999998882 2789999999999999999999988 4444
Q ss_pred CCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 271 PEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
.. +.++|+|+.+++ .+.+.+.|.++||.++||...+ .++++|+|++ +++++++++++|+++.
T Consensus 289 ~~--------------~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~-~~~~iRis~~-~~~e~~~l~~al~~~~ 352 (360)
T 3hdo_A 289 IP--------------SQGNYLFATPPDRDGKRVYDGLYARKVLVRHFSDPL-LAHGMRISIG-TREEMEQTLAALKEIG 352 (360)
T ss_dssp CC--------------CSSSEEEEECTTCCHHHHHHHHHHTTEECBCCCSTT-TTTSEEEECC-CHHHHHHHHHHHHHHH
T ss_pred cC--------------CCccEEEEECCCCCHHHHHHHHHHCCEEEEECCCCC-CCCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 32 233477777764 3777888889999999987643 3689999995 8999999999999988
Q ss_pred hchh
Q 018172 349 GGSI 352 (360)
Q Consensus 349 ~~~~ 352 (360)
+..+
T Consensus 353 ~~~~ 356 (360)
T 3hdo_A 353 EGHH 356 (360)
T ss_dssp C---
T ss_pred cccc
Confidence 7654
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=286.19 Aligned_cols=292 Identities=14% Similarity=0.191 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
+++|++++++++. .|.++.+ ++|++|+|+++++..++..++++||+ |+++.|+|..+...++..|.+++.++.+
T Consensus 69 ~~l~~~la~~l~~~~g~~~~~-~~v~~t~g~~~a~~~~~~~l~~~gd~----vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 143 (399)
T 1c7n_A 69 EEYKKTVKKWMKDRHQWDIQT-DWIINTAGVVPAVFNAVREFTKPGDG----VIIITPVYYPFFMAIKNQERKIIECELL 143 (399)
T ss_dssp HHHHHHHHHHHHHHHCCCCCG-GGEEEESSHHHHHHHHHHHHCCTTCE----EEECSSCCTHHHHHHHTTTCEEEECCCE
T ss_pred HHHHHHHHHHHHHHhCCCCCh-hhEEEcCCHHHHHHHHHHHhcCCCCE----EEEcCCCcHhHHHHHHHcCCEEEecccc
Confidence 9999999999754 3544444 58999999999999999999999998 9999999999999999999999988765
Q ss_pred -ccc---ccc-------C-CCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC-----CcCCCC-
Q 018172 118 -ANT---FDK-------N-NGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY-----TPITGA- 175 (360)
Q Consensus 118 -~~~---~~~-------~-~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~-----~~~~~~- 175 (360)
.++ ++. + +++++|++++||||||.+++ +.+.++|+++|+++|+||+|.+..+ .++...
T Consensus 144 ~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 223 (399)
T 1c7n_A 144 EKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSID 223 (399)
T ss_dssp EETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred cCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcC
Confidence 222 211 2 67899999999999999988 3566788889999999999986322 222222
Q ss_pred ---CCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccc-cCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 176 ---ADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI-GVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 176 ---~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
.++++++.|+||.++++|+|+||++++++++++.+.......+. +.+.+.|.++.++++.. ..++++.++.+
T Consensus 224 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~ 299 (399)
T 1c7n_A 224 EQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC----GKWLDGCIKVI 299 (399)
T ss_dssp HHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred ccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC----hHHHHHHHHHH
Confidence 46789999999999999999999998557899999877665544 67899999988888732 37899999999
Q ss_pred HHHHHHHHHHHHh-cCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHH-hhCeeeeCCCCCCC-CCC
Q 018172 252 SERWNMLRQVIRQ-SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLR-AERIMARGGRRFGA-DAK 324 (360)
Q Consensus 252 ~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~-~~gI~~~pg~~f~~-~~~ 324 (360)
+++++++.+.|++ ++++.+..+.+++ ++|+++++ ...+.+.|. ++||.++||..|+. .++
T Consensus 300 ~~~~~~l~~~L~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~ 366 (399)
T 1c7n_A 300 DKNQRIVKDFFEVNHPEIKAPLIEGTY-------------LQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIG 366 (399)
T ss_dssp HHHHHHHHHHHHHHCTTSBCCCCSBSS-------------EEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTT
T ss_pred HHHHHHHHHHHHhhCCCCeEecCCceE-------------EEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCC
Confidence 9999999999998 6666665555443 55777753 355666665 78999999998863 467
Q ss_pred eEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 325 YARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 325 ~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
++||+++..+|++++++++|.+++++.+
T Consensus 367 ~iRis~~~~~~~l~~~l~~l~~~l~~~~ 394 (399)
T 1c7n_A 367 FERINLAAPSSVIQESLERLNKALKDLK 394 (399)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEeccCHHHHHHHHHHHHHHHHHHH
Confidence 9999998888999999999999987654
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=281.17 Aligned_cols=277 Identities=17% Similarity=0.215 Sum_probs=232.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
.+++|++++++++. ++++|++|+|++++++.++..++++||+ |+++.|+|..+...++..|++++.++.+
T Consensus 69 ~~~lr~~la~~~~~------~~~~v~~~~g~t~a~~~~~~~~~~~gd~----vl~~~~~~~~~~~~~~~~g~~~~~v~~~ 138 (363)
T 3ffh_A 69 ASSLRKEVADFYQL------EEEELIFTAGVDELIELLTRVLLDTTTN----TVMATPTFVQYRQNALIEGAEVREIPLL 138 (363)
T ss_dssp CHHHHHHHHHHHTC------CGGGEEEESSHHHHHHHHHHHHCSTTCE----EEEEESSCHHHHHHHHHHTCEEEEEECC
T ss_pred hHHHHHHHHHHhCC------ChhhEEEeCCHHHHHHHHHHHHccCCCE----EEEcCCChHHHHHHHHHcCCEEEEecCC
Confidence 39999999999985 5579999999999999999999999998 9999999999999999999999999876
Q ss_pred cc-cccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhc--CcEEEEeecccCCCC------CcCCCCCCccE
Q 018172 118 AN-TFDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSA--EGKLIHDLAYYWPQY------TPITGAADHDI 180 (360)
Q Consensus 118 ~~-~~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~--~~~li~D~ay~~~~~------~~~~~~~~~~i 180 (360)
.+ .++. ++++++|++++||||||.+++ +.+.++++.. |+++|+|++|.+... .......++++
T Consensus 139 ~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i 218 (363)
T 3ffh_A 139 QDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLI 218 (363)
T ss_dssp TTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEE
T ss_pred CCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEE
Confidence 32 2221 468999999999999999998 5566666655 999999999984221 11224577899
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQ 260 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (360)
++.|+||.+|++|+|+||+++ ++++++.+..... .++.|.+.|.++.++++ +. .++++.+++++++++++.+
T Consensus 219 ~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~---~~--~~~~~~~~~~~~~~~~l~~ 290 (363)
T 3ffh_A 219 ITRTFSKIYGLASARVGYGIA-DKEIIRQLNIVRP--PFNTTSIGQKLAIEAIK---DQ--AFIGECRTSNANGIKQYEA 290 (363)
T ss_dssp EEEESSSTTCCSSCCCEEEEE-CHHHHHHHHHTCC--SCCCBHHHHHHHHHHHH---CH--HHHHHHHHHHHHHHHHHHH
T ss_pred EEeechhhhcCchhceeeeec-CHHHHHHHHHhCC--CCCCCHHHHHHHHHHhc---CH--HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 8999999988764 57899999999999887 22 7899999999999999999
Q ss_pred HHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-chHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHH
Q 018172 261 VIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-EDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNI 339 (360)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~ 339 (360)
.|+++.++.+.. +.++|+|++++ +...+.+.|.++||.++||..|+. ++++|++++ +++++++
T Consensus 291 ~l~~~~g~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~-~~~iRis~~-~~~~i~~ 354 (363)
T 3ffh_A 291 FAKRFEKVKLYP--------------ANGNFVLIDLGIEAGTIFSYLEKNGYITRSGAALGF-PTAVRITIG-KEEDNSA 354 (363)
T ss_dssp HHHHCTTCEECC--------------CCSSEEEEECSSCHHHHHHHHHHTTEECEETTTTTC-TTEEEEECC-CHHHHHH
T ss_pred HHhhCCCceECC--------------CCCeEEEEECCCCHHHHHHHHHHCCeEEEeCccCCC-CCeEEEECC-CHHHHHH
Confidence 999965555432 33457888887 447778888889999999999986 789999985 9999999
Q ss_pred HHHHHHHHH
Q 018172 340 FLERLSAIQ 348 (360)
Q Consensus 340 ~~~~l~~~~ 348 (360)
++++|++++
T Consensus 355 ~~~~l~~~l 363 (363)
T 3ffh_A 355 VIALLEKLL 363 (363)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998864
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=289.87 Aligned_cols=297 Identities=18% Similarity=0.246 Sum_probs=240.1
Q ss_pred cccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
.|++..|. +++|++++++++. +|..+++ ++|++|+|+++++..++..++++||+ |++++|+|..+...+
T Consensus 73 ~y~~~~g~-----~~l~~~la~~l~~~~g~~~~~-~~v~~t~g~~~al~~~~~~l~~~gd~----Vl~~~~~~~~~~~~~ 142 (406)
T 1xi9_A 73 YYGDSEGL-----PELRKAIVEREKRKNGVDITP-DDVRVTAAVTEALQLIFGALLDPGDE----ILVPGPSYPPYTGLV 142 (406)
T ss_dssp SCCCTTCC-----HHHHHHHHHHHHHHHCCCCCG-GGEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCHHHHHHH
T ss_pred CCCCCCCc-----HHHHHHHHHHHHHhcCCCCCH-HHEEEcCChHHHHHHHHHHhCCCCCE----EEEcCCCCccHHHHH
Confidence 57777777 9999999999864 4555555 58999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCCc-cccc--c-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC-
Q 018172 105 DYLRSGLYKWDGDA-NTFD--K-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY- 169 (360)
Q Consensus 105 ~~~g~~~~~~~~~~-~~~~--~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~- 169 (360)
+..|++++.++.+. +++. . ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|.+..+
T Consensus 143 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~ 222 (406)
T 1xi9_A 143 KFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYE 222 (406)
T ss_dssp HHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSS
T ss_pred HHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccC
Confidence 99999999888754 2321 1 357899999999999999987 3566788889999999999986432
Q ss_pred ---CcCCC-CCCc-cEEEeccccccCCCCceEEEEe--ecCH----HHHHHHHHHHhhccccCChHHHHHHHHHhcccCC
Q 018172 170 ---TPITG-AADH-DIMLFTLSKCTGHAGSRIGWAL--VKDT----EVARKMTRFIELGSIGVSKESQLRAAKILGIVSD 238 (360)
Q Consensus 170 ---~~~~~-~~~~-~i~~~S~sK~~~~~G~r~G~~~--~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (360)
.++.. ..++ +++++|+||.++++|+|+||++ + ++ ++++.+....... ++.+.+.|.++.++++. .
T Consensus 223 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~--~ 298 (406)
T 1xi9_A 223 GEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVD-PENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTG--P 298 (406)
T ss_dssp SCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEEC-TTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHS--C
T ss_pred CCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEEec-CchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhC--C
Confidence 11111 1567 8999999999999999999999 7 77 8999998777655 78889999999998863 2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----hHHHHHHH-HhhCee
Q 018172 239 DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----DEDCEKLL-RAERIM 312 (360)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l-~~~gI~ 312 (360)
. .++++.++.++++++++.+.|++++++.+..+.+++ |+|++++. ...+.+.| +++||.
T Consensus 299 ~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~l~~~~gi~ 363 (406)
T 1xi9_A 299 M--DYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAF-------------YIFPKIEVGPWKNDKEFVLDVLHNAHVL 363 (406)
T ss_dssp C--HHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSS-------------EECCEECSCSCSSHHHHHHHHHHHHCEE
T ss_pred c--HHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeE-------------EEEEecCccCCCCHHHHHHHHHHhCCEE
Confidence 2 668999999999999999999988666665555443 56665542 35555555 489999
Q ss_pred eeCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 313 ARGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 313 ~~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
+.||..|+. .++++||+++.++|++++++++|.+++++.
T Consensus 364 v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 364 FVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp CEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHC
T ss_pred EeCchhcCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 999998874 367999999889999999999999998754
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=291.66 Aligned_cols=301 Identities=19% Similarity=0.270 Sum_probs=236.6
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhc---CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVV---DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~---~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~ 101 (360)
..|++..|. ++||++++++++.. +.++. +++|++|+|+++++..++..++++||. |+++.|+|..+.
T Consensus 80 ~~y~~~~g~-----~~l~~~la~~~~~~~~~~~~~~-~~~v~~~~gg~~a~~~~~~~l~~~gd~----vl~~~p~~~~~~ 149 (435)
T 3piu_A 80 ALFQDYHGL-----PAFKKAMVDFMAEIRGNKVTFD-PNHLVLTAGATSANETFIFCLADPGEA----VLIPTPYYPGFD 149 (435)
T ss_dssp HHCCCTTCC-----HHHHHHHHHHHHHHTTTSSCCC-GGGEEEEEHHHHHHHHHHHHHCCTTCE----EEEEESCCTTHH
T ss_pred cccCCCCCc-----HHHHHHHHHHHHHhhCCCCCCC-HHHEEEcCChHHHHHHHHHHhcCCCCe----EEECCCccccHH
Confidence 568888888 99999999998732 23344 458999999999999999999999998 999999999999
Q ss_pred HHHH-HhCCeeeeecCCccc-c--cc-------------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEE
Q 018172 102 AETD-YLRSGLYKWDGDANT-F--DK-------------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIH 160 (360)
Q Consensus 102 ~~~~-~~g~~~~~~~~~~~~-~--~~-------------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~ 160 (360)
..+. ..|.+++.++.+.++ + +. ..++++|++++||||||.+++ +.+.++|+++|+++|+
T Consensus 150 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 229 (435)
T 3piu_A 150 RDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLIS 229 (435)
T ss_dssp HHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 8888 789999999876432 2 11 137899999999999999988 3456778889999999
Q ss_pred eecccCCCC-----CcCC---CC---------CCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCCh
Q 018172 161 DLAYYWPQY-----TPIT---GA---------ADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSK 223 (360)
Q Consensus 161 D~ay~~~~~-----~~~~---~~---------~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~ 223 (360)
||+|.+..+ .+.. .. .++++++.|+||.+|++|+|+||++++++.+.+.+.+... ..+.++
T Consensus 230 Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~ 307 (435)
T 3piu_A 230 DEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSS 307 (435)
T ss_dssp ECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGG--GSCCCH
T ss_pred eccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhh--cCCCCH
Confidence 999985222 1111 11 5678999999999999999999999966788888876654 356788
Q ss_pred HHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----
Q 018172 224 ESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----- 298 (360)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 298 (360)
+.|.++.++++... ..++++++.+++++++++++.+.|+++ ++.+..+.+++ |+|+++++
T Consensus 308 ~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~-------------~~~~~l~~~~~~~ 372 (435)
T 3piu_A 308 QTQHLLSAMLSDKK-LTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGL-------------FCWVDMRHLLRSN 372 (435)
T ss_dssp HHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSS-------------EEEEECGGGSSSS
T ss_pred HHHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeE-------------EEEEEcccccccC
Confidence 99999888887321 012467888999999999999999988 45544444433 77887764
Q ss_pred ---h-HHHHHHH-HhhCeeeeCCCCCCC-CCCeEEEEecC-ChHHHHHHHHHHHHHHhchh
Q 018172 299 ---D-EDCEKLL-RAERIMARGGRRFGA-DAKYARVSMLS-REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 299 ---~-~~~~~~l-~~~gI~~~pg~~f~~-~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~~ 352 (360)
. ..+.+.| +++||.+.||..|+. .++++||+++. ++|++++++++|.+++++.+
T Consensus 373 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 373 TFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp SHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence 2 3444444 445999999998864 57899999987 99999999999999987653
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=288.40 Aligned_cols=301 Identities=17% Similarity=0.266 Sum_probs=236.3
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCC--CCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNA--VSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY 100 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~--~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~ 100 (360)
..+|+++.|. ++||++++++++. +|.. +.+ ++|++|+|+++++..++..++++||+ |+++.|+|..+
T Consensus 76 ~~~Y~~~~g~-----~~lr~~la~~~~~~~g~~~~~~~-~~i~~~~G~~~ai~~~~~~~~~~gd~----Vl~~~p~y~~~ 145 (428)
T 1iay_A 76 IANFQDYHGL-----PEFRKAIAKFMEKTRGGRVRFDP-ERVVMAGGATGANETIIFCLADPGDA----FLVPSPYYPAF 145 (428)
T ss_dssp HHHCCCTTCC-----HHHHHHHHHHHHHHTTTCSCCCT-TSCEEEEHHHHHHHHHHHHHCCTTCE----EEEESSCCTTH
T ss_pred hcCCCCCCCc-----HHHHHHHHHHHHHhcCCCCCCCh-hhEEEccChHHHHHHHHHHhCCCCCe----EEEccCCCcch
Confidence 4679888887 9999999999873 3433 334 58999999999999999999999998 99999999999
Q ss_pred HHHH-HHhCCeeeeecCCcc-cc--cc-------C------CCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEE
Q 018172 101 PAET-DYLRSGLYKWDGDAN-TF--DK-------N------NGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLI 159 (360)
Q Consensus 101 ~~~~-~~~g~~~~~~~~~~~-~~--~~-------~------~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li 159 (360)
...+ ...|.+++.++.+.+ ++ +. + +++++|++++||||||.+++ +.+.++|+++|+++|
T Consensus 146 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li 225 (428)
T 1iay_A 146 NRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLV 225 (428)
T ss_dssp HHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEE
Confidence 8755 467999999887532 22 11 1 36899999999999999998 345678888999999
Q ss_pred EeecccCCCC-----CcCC---CC-------CCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChH
Q 018172 160 HDLAYYWPQY-----TPIT---GA-------ADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKE 224 (360)
Q Consensus 160 ~D~ay~~~~~-----~~~~---~~-------~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~ 224 (360)
+||+|.+..+ .++. .. .++++++.|+||.+|++|+|+||++++++++++.+.+... .++.+.+
T Consensus 226 ~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~--~~~~~~~ 303 (428)
T 1iay_A 226 CDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSS--FGLVSTQ 303 (428)
T ss_dssp EECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHT--TSCCCHH
T ss_pred EeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHh--cccCCHH
Confidence 9999986222 1211 12 5778999999999999999999999866888888887643 3578899
Q ss_pred HHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc------
Q 018172 225 SQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE------ 298 (360)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 298 (360)
+|.++.++++... .++.++++.++.++++++++.+.|+++ ++.+..+.+ ++|+|+++++
T Consensus 304 ~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-------------g~~~~~~~~~~~~~~~ 368 (428)
T 1iay_A 304 TQYFLAAMLSDEK-FVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNA-------------GLFCWMDLRPLLREST 368 (428)
T ss_dssp HHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSS-------------SSEEEEECGGGCSSSS
T ss_pred HHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCe-------------eEEEEEechhhcCCCc
Confidence 9999988887310 022478889999999999999999988 444433323 3477888753
Q ss_pred --h-HHHHHHHHhh-CeeeeCCCCCCC-CCCeEEEEec-CChHHHHHHHHHHHHHHhch
Q 018172 299 --D-EDCEKLLRAE-RIMARGGRRFGA-DAKYARVSML-SREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 299 --~-~~~~~~l~~~-gI~~~pg~~f~~-~~~~~R~s~~-~~~e~~~~~~~~l~~~~~~~ 351 (360)
. ..+.+.|.++ ||.++||..|+. .++++||+++ .++|++++++++|++++++.
T Consensus 369 ~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 427 (428)
T 1iay_A 369 FDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp HHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhcc
Confidence 2 4566666665 999999998865 3679999998 49999999999999998764
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=280.84 Aligned_cols=286 Identities=19% Similarity=0.243 Sum_probs=231.5
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|++. |. +++|++++++++. ++++|++|+|+++++..++..+ +||+ |+++.|+|..+...+
T Consensus 54 ~~y~~~-~~-----~~l~~~la~~~~~------~~~~v~~~~g~~~al~~~~~~~--~gd~----vl~~~p~y~~~~~~~ 115 (364)
T 1lc5_A 54 ERYPDA-DY-----FHLHQALARHHQV------PASWILAGNGETESIFTVASGL--KPRR----AMIVTPGFAEYGRAL 115 (364)
T ss_dssp GSCCCT-TC-----HHHHHHHHHHHTS------CGGGEEEESSHHHHHHHHHHHH--CCSE----EEEEESCCTHHHHHH
T ss_pred hcCCCC-CH-----HHHHHHHHHHHCc------CHHHEEECCCHHHHHHHHHHHc--CCCe----EEEeCCCcHHHHHHH
Confidence 457543 55 9999999999975 4568999999999999999998 5777 999999999999999
Q ss_pred HHhCCeeeeecCCc-ccccc--------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC--
Q 018172 105 DYLRSGLYKWDGDA-NTFDK--------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY-- 169 (360)
Q Consensus 105 ~~~g~~~~~~~~~~-~~~~~--------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~-- 169 (360)
+..|.+++.++.+. +++.. +++++++++++||||||.+++ +.+.++|+++|+++|+|++|.+..+
T Consensus 116 ~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~ 195 (364)
T 1lc5_A 116 AQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHE 195 (364)
T ss_dssp HHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTC
T ss_pred HHcCCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCc
Confidence 99999999998775 33321 257899999999999999998 3566788889999999999985332
Q ss_pred ---CcCCCCCCccEEEeccccccCCCCceEEEEe-ecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHH
Q 018172 170 ---TPITGAADHDIMLFTLSKCTGHAGSRIGWAL-VKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFE 245 (360)
Q Consensus 170 ---~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (360)
....+..++++++.|+||.++++|+|+||++ + ++++++.+..... +++.|.+.|.++.++++. ..+++
T Consensus 196 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~-----~~~~~ 267 (364)
T 1lc5_A 196 TGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNS-DDAAMARMRRQQM--PWSVNALAALAGEVALQD-----SAWQQ 267 (364)
T ss_dssp CCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECC-CHHHHHHHHHHSC--TTCSCHHHHHHHHHGGGC-----HHHHH
T ss_pred cchhhHhccCCCEEEEEECchhhcCCccceEEEEEC-CHHHHHHHHHhCC--CCCCCHHHHHHHHHHHhC-----cHHHH
Confidence 1222456789999999999999999999999 7 8999999887653 568899999999988873 27899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCC-CC
Q 018172 246 YGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGA-DA 323 (360)
Q Consensus 246 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~-~~ 323 (360)
+.++.++++++++.+.|++++++.+.. +.++|+|+++++. ..+.+.|.++||.++||..|+. .+
T Consensus 268 ~~~~~~~~~~~~l~~~L~~~~~~~~~~--------------~~g~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~ 333 (364)
T 1lc5_A 268 ATWHWLREEGARFYQALCQLPLLTVYP--------------GRANYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDS 333 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTEEECC--------------CSSSEEEEEESCTTCCHHHHHHTTTEECEECTTSTTCCT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEECC--------------CCCeEEEEECCCcHHHHHHHHHHCCcEEeeCcccCCCCC
Confidence 999999999999999999886555432 2334677777653 4566777788999999998853 46
Q ss_pred CeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 324 KYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 324 ~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
+++|+|++ +++++++++++|++++++.
T Consensus 334 ~~iRis~~-~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 334 RYYRVAIR-SAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp TEEEEECC-CHHHHHHHHHHHHHHC---
T ss_pred CEEEEEeC-CHHHHHHHHHHHHHHhhcc
Confidence 79999984 6888999999999988654
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=302.32 Aligned_cols=304 Identities=16% Similarity=0.206 Sum_probs=234.2
Q ss_pred ccc-CCCCccccccHHHHHHHHHHHhhc--C-CCCCCCCcEEEcCChHHHHHHHHHh-----hcCCCCCCCceEEEeCCC
Q 018172 26 YLS-DMGNVCWFLVPELAEAINNLHHVV--D-NAVSDGRHIVIGTGSTQLYQAALYA-----LSSPGGPEPISVVSAAPY 96 (360)
Q Consensus 26 ~y~-~~~g~~~~~~~~lr~~la~~~~~~--~-~~~~~~~~i~~t~G~t~~l~~~~~~-----l~~~gd~~~~~vl~~~p~ 96 (360)
.|+ +..|. +++|+++++++... + ..+.++++|++|+|++++++.++.+ ++++||+ |+++.|+
T Consensus 132 ~y~~~~~g~-----~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~----Viv~~p~ 202 (533)
T 3f6t_A 132 NYPVPDRCL-----VNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDK----IAINEPI 202 (533)
T ss_dssp SCCSSSSCC-----HHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCE----EEEESSC
T ss_pred CCCCCcccH-----HHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCE----EEEcCCC
Confidence 344 66777 99999999998654 3 4555556999999999999999998 7899998 9999999
Q ss_pred CCCcHHHHHHhCCeeeeecCCc---c--cccc-------CCCeeEEEEcCCCCCCcccchH----HHHHHhh-hcCcEEE
Q 018172 97 YSQYPAETDYLRSGLYKWDGDA---N--TFDK-------NNGAYIEVVNSPNNPDGTIREA----VLAKVNR-SAEGKLI 159 (360)
Q Consensus 97 ~~~~~~~~~~~g~~~~~~~~~~---~--~~~~-------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~-~~~~~li 159 (360)
|.++..+++..|++++.++++. + +++. ++++++|++++||||||.+++. .+.++|+ ++++++|
T Consensus 203 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li 282 (533)
T 3f6t_A 203 FTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMII 282 (533)
T ss_dssp CHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEE
T ss_pred cHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEE
Confidence 9999999999999999888753 1 2221 4689999999999999999983 4556777 5899999
Q ss_pred EeecccCCCC--CcCC-CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHH--------------------------
Q 018172 160 HDLAYYWPQY--TPIT-GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKM-------------------------- 210 (360)
Q Consensus 160 ~D~ay~~~~~--~~~~-~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l-------------------------- 210 (360)
+|++|.+... .++. ...+++++++||||.+|++|+|+||+++++.++++.+
T Consensus 283 ~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~ 362 (533)
T 3f6t_A 283 SDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKM 362 (533)
T ss_dssp EECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGC
T ss_pred EcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchh
Confidence 9999985322 2221 2346889999999999999999999999544333322
Q ss_pred ----------HHHHhhccccCChHHHHHHH----HHhccc--CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q 018172 211 ----------TRFIELGSIGVSKESQLRAA----KILGIV--SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYP 274 (360)
Q Consensus 211 ----------~~~~~~~~~~~~~~~~~~~~----~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 274 (360)
.......+.+.+.+.|.+++ +++..- .+....+++++++.++++++.+.+.|. ++ +....+.
T Consensus 363 ~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~-~~~~~~~ 440 (533)
T 3f6t_A 363 KFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-AP-KDETDTN 440 (533)
T ss_dssp CHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CC-CCCSTTB
T ss_pred hhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CC-ccccCCC
Confidence 23334456678888998843 334200 022358999999999999999999997 53 4555555
Q ss_pred CcccccccccCCCCCCcccccCC-------------------ch-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-C
Q 018172 275 LEYCNFTGKFTNSHPGFAWLESK-------------------ED-EDCEKLLRAERIMARGGRRFGADAKYARVSMLS-R 333 (360)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~ 333 (360)
+++ |+|++++ +. +.+..+++++||.+.||+.|+...+++|||++. +
T Consensus 441 ~g~-------------~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~ 507 (533)
T 3f6t_A 441 THY-------------YSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQANLP 507 (533)
T ss_dssp CCS-------------EEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSSSC
T ss_pred ceE-------------EEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCC
Confidence 555 5666553 22 566777888999999999998777899999986 9
Q ss_pred hHHHHHHHHHHHHHHhchhc
Q 018172 334 EEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 334 ~e~~~~~~~~l~~~~~~~~~ 353 (360)
++++++++++|.+++.+...
T Consensus 508 ~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 508 TEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987543
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=288.91 Aligned_cols=297 Identities=13% Similarity=0.130 Sum_probs=236.7
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCc---EEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRH---IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY 100 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~---i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~ 100 (360)
...|++..|. +++|+++++++...+..+.+ ++ |++|+|+++++..++..++++||+ |+++.|+|..+
T Consensus 81 ~~~y~~~~g~-----~~lr~~ia~~~~~~~~~~~~-~~~~~i~~t~g~~~al~~~~~~l~~~gd~----Vl~~~p~y~~~ 150 (430)
T 2x5f_A 81 IFPYAPPQGI-----EELRDLWQQKMLRDNPELSI-DNMSRPIVTNALTHGLSLVGDLFVNQDDT----ILLPEHNWGNY 150 (430)
T ss_dssp TSSCCCTTCC-----HHHHHHHHHHHHHHCTTCCG-GGBCCCEEESHHHHHHHHHHHHHCCTTCE----EEEESSCCTHH
T ss_pred ccccCCCCCC-----HHHHHHHHHHHhccCcccCC-CccceEEEcCCchHHHHHHHHHHhCCCCE----EEEcCCcCccH
Confidence 4578888787 99999999998655533443 57 999999999999999999999998 99999999999
Q ss_pred HHHHHH-hCCeeeeecCCcc--cccc-------CC---CeeEEEEcCCCCCCcccch----HHHHHHhhh-----cCcEE
Q 018172 101 PAETDY-LRSGLYKWDGDAN--TFDK-------NN---GAYIEVVNSPNNPDGTIRE----AVLAKVNRS-----AEGKL 158 (360)
Q Consensus 101 ~~~~~~-~g~~~~~~~~~~~--~~~~-------~~---~~~~i~~~~p~NPtG~~~~----~~~~~~~~~-----~~~~l 158 (360)
...++. .|++++.++.+.+ +++. ++ +++++++++||||||.+++ +.+.++|++ +|+++
T Consensus 151 ~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~l 230 (430)
T 2x5f_A 151 KLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIA 230 (430)
T ss_dssp HHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEE
Confidence 999999 9999999887642 2322 12 7899999999999999998 356678998 99999
Q ss_pred EEeecccCCCC-----CcCC----CCCCc---cEEEeccccccCCCCceEEEEee--cCHHHHHHHHHHHhh----cccc
Q 018172 159 IHDLAYYWPQY-----TPIT----GAADH---DIMLFTLSKCTGHAGSRIGWALV--KDTEVARKMTRFIEL----GSIG 220 (360)
Q Consensus 159 i~D~ay~~~~~-----~~~~----~~~~~---~i~~~S~sK~~~~~G~r~G~~~~--~~~~~~~~l~~~~~~----~~~~ 220 (360)
|+||+|.+..+ .++. ...++ ++++.|+||.++++|+|+||+++ .++++++.+...... ...+
T Consensus 231 i~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 310 (430)
T 2x5f_A 231 VVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISS 310 (430)
T ss_dssp EEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSS
T ss_pred EEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCC
Confidence 99999985322 2221 23567 89999999999999999999997 368899988876654 5678
Q ss_pred CChHHHHHHHHHhc-ccCCCchhHHHHHHHHHHHHHHHHHHHHH----hcCCcccCCCCCcccccccccCCCCCCccccc
Q 018172 221 VSKESQLRAAKILG-IVSDDYPNFFEYGRRLMSERWNMLRQVIR----QSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLE 295 (360)
Q Consensus 221 ~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (360)
.|.+.|.++.++++ .. .+.+.+++.++.++++++++.+.|+ .. ++.+..+.+++ |+|++
T Consensus 311 ~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~g~-------------~~~~~ 374 (430)
T 2x5f_A 311 GPLPTQSAVKHVLKNNK--QFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFNSGY-------------FMAIK 374 (430)
T ss_dssp CCHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCCBSS-------------EEEEE
T ss_pred CChHHHHHHHHHHccCh--HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCCceE-------------EEEeC
Confidence 99999999999886 42 2235556699999999999999998 44 34444444333 67888
Q ss_pred CC--chHHHHHHHHh-hCeeeeCCCCCCCCCCeEEEEec-CChHHHHHHHHHHHHHHhch
Q 018172 296 SK--EDEDCEKLLRA-ERIMARGGRRFGADAKYARVSML-SREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 296 ~~--~~~~~~~~l~~-~gI~~~pg~~f~~~~~~~R~s~~-~~~e~~~~~~~~l~~~~~~~ 351 (360)
++ +...+.+.|.+ +||.++|| .++++|+|++ .++|++++++++|++++++.
T Consensus 375 ~~~~~~~~~~~~l~~~~gi~v~~g-----~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 375 VHDVDPEALRKHLIDKYSIGVIAL-----NATDIRIAFSCVEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp ESSSCHHHHHHHHHHHHCEECEEC-----SSSEEEEEGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCEEEecC-----CCCeEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 76 33556666666 99999997 3679999998 58999999999999998653
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=282.03 Aligned_cols=292 Identities=15% Similarity=0.165 Sum_probs=237.4
Q ss_pred HHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
.++|++++++++ ..|.++++ ++|++|+|+++++..++..++++||+ |+++.|+|..+...++..|.+++.++.+
T Consensus 65 ~~l~~~la~~l~~~~g~~~~~-~~i~~~~g~~~a~~~~~~~l~~~gd~----vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 139 (391)
T 3dzz_A 65 AEYYKAVADWEEIEHRARPKE-DWCVFASGVVPAISAMVRQFTSPGDQ----ILVQEPVYNMFYSVIEGNGRRVISSDLI 139 (391)
T ss_dssp HHHHHHHHHHHHHHHSCCCCG-GGEEEESCHHHHHHHHHHHHSCTTCE----EEECSSCCHHHHHHHHHTTCEEEECCCE
T ss_pred HHHHHHHHHHHHHHhCCCCCH-HHEEECCCHHHHHHHHHHHhCCCCCe----EEECCCCcHHHHHHHHHcCCEEEEeeee
Confidence 899999999876 34555554 58999999999999999999999998 9999999999999999999999998874
Q ss_pred c-cc---ccc--------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC-----CCcCCC--
Q 018172 118 A-NT---FDK--------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ-----YTPITG-- 174 (360)
Q Consensus 118 ~-~~---~~~--------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~-----~~~~~~-- 174 (360)
. ++ ++. ++++++|++++||||||.+++ +.+.++|+++|+++|+|++|.+.. ..++..
T Consensus 140 ~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 219 (391)
T 3dzz_A 140 YENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVD 219 (391)
T ss_dssp EETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSC
T ss_pred ecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcC
Confidence 1 22 221 268999999999999999987 356678888999999999998532 222221
Q ss_pred --CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHh-hccccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 175 --AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIE-LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 175 --~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
..++++++.|+||.+|++|+|+||++++++++++.+..... ....+.+.+.|.++.++++.. ..++++.++++
T Consensus 220 ~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~ 295 (391)
T 3dzz_A 220 WDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG----HDWLRELKQVL 295 (391)
T ss_dssp TTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred ccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc----HHHHHHHHHHH
Confidence 14577999999999999999999999944999999987754 344678889999998888742 37899999999
Q ss_pred HHHHHHHHHHHHh-cCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHH-HhhCeeeeCCCCCCC-CCC
Q 018172 252 SERWNMLRQVIRQ-SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLL-RAERIMARGGRRFGA-DAK 324 (360)
Q Consensus 252 ~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l-~~~gI~~~pg~~f~~-~~~ 324 (360)
+++++++.+.|++ ++++.+..+.+++ ++|++++. ...+.+.| +++||.++||..|+. .++
T Consensus 296 ~~~~~~l~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~ 362 (391)
T 3dzz_A 296 RDNFAYAREFLAKEVPEVKVLDSNASY-------------LAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHE 362 (391)
T ss_dssp HHHHHHHHHHHHHHCTTSEECCCCBSS-------------EEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGG
T ss_pred HHHHHHHHHHHHhhCCCcEEeccCceE-------------EEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCC
Confidence 9999999999998 6777766555544 56676653 25666666 589999999998875 468
Q ss_pred eEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 325 YARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 325 ~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
++|++++.+++++++++++|.+++++.+
T Consensus 363 ~iRis~~~~~~~i~~~l~~l~~~l~~~~ 390 (391)
T 3dzz_A 363 FVRINLACPKELVIDGMQRLKQGVLNLN 390 (391)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 9999998899999999999999997643
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=280.07 Aligned_cols=288 Identities=16% Similarity=0.238 Sum_probs=228.9
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
...|+++.+ ++||++++++++. ++++|++|+|+++++.+++..+. ||+ |+++.|+|..+...
T Consensus 44 ~~~y~~~~~------~~lr~~la~~~~~------~~~~i~~t~g~~~al~~~~~~l~--gd~----Vi~~~p~~~~~~~~ 105 (350)
T 3fkd_A 44 IRHYPEPDA------GTLRQMLAKRNSV------DNNAILVTNGPTAAFYQIAQAFR--GSR----SLIAIPSFAEYEDA 105 (350)
T ss_dssp GGSCCCTTC------HHHHHHHHHHTTC------CGGGEEEESHHHHHHHHHHHHTT--TCE----EEEEESCCHHHHHH
T ss_pred HhcCCCCcH------HHHHHHHHHHhCc------CHHHEEEcCCHHHHHHHHHHHHC--CCE----EEEeCCCcHHHHHH
Confidence 445766553 8999999999985 55699999999999999999988 887 99999999999999
Q ss_pred HHHhCCeeeeecC-Cc-cccccCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcC-cEEEEeecccCCCCC-----cCCC
Q 018172 104 TDYLRSGLYKWDG-DA-NTFDKNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAE-GKLIHDLAYYWPQYT-----PITG 174 (360)
Q Consensus 104 ~~~~g~~~~~~~~-~~-~~~~~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~-~~li~D~ay~~~~~~-----~~~~ 174 (360)
++..|++++.++. +. +++.. +++++|++++||||||.+++ +.+.++++..+ .++|+|++|.+.... ...+
T Consensus 106 ~~~~g~~~~~v~~~~~~~~~~~-~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~ 184 (350)
T 3fkd_A 106 CRMYEHEVCFYPSNEDIGEADF-SNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIK 184 (350)
T ss_dssp HHHTTCEEEEEETTSCGGGSCC-TTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGT
T ss_pred HHHcCCeEEEEecCCccccCcc-CCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhh
Confidence 9999999999998 65 55655 67899999999999999999 45556555443 599999999853221 2224
Q ss_pred CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHH
Q 018172 175 AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSER 254 (360)
Q Consensus 175 ~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 254 (360)
..+++++++||||.++++|+|+||+++ ++++++.+..... .++.+.+.|.++.++++... .+.++.++.. ++
T Consensus 185 ~~~~~i~~~S~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~-~~ 256 (350)
T 3fkd_A 185 GRKNLVMVYSFSHAYGIPGLRIGYIVA-NKDFMKRVAAFST--PWAVNALAIEAAKFILIHPA----QFTLPIRKWQ-RN 256 (350)
T ss_dssp TCSSEEEEEESHHHHSCGGGCCEEEEC-CHHHHHHHHTTCC--TTCSCHHHHHHHHHHHHCTT----TTCCCHHHHH-HH
T ss_pred cCCCEEEEecCchhccCcchheEeEEe-CHHHHHHHHHhCC--CCCCCHHHHHHHHHHHhCHH----HHHHHHHHHH-HH
Confidence 667889999999999999999999999 8999999987654 46789999999999887421 2344444444 88
Q ss_pred HHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHh-hCeeeeCCCCCCC-CCCeEEEEe
Q 018172 255 WNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRA-ERIMARGGRRFGA-DAKYARVSM 330 (360)
Q Consensus 255 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~-~gI~~~pg~~f~~-~~~~~R~s~ 330 (360)
++++.+.|++++++.+.. +.++|+|+.++. ...+.+.|.+ +||.++||..|+. .++++|||+
T Consensus 257 ~~~l~~~L~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~ 322 (350)
T 3fkd_A 257 TVDFITALNRLDGVEVHP--------------SGTTFFLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITT 322 (350)
T ss_dssp HHHHHHHHHHSTTEEECC--------------CSSSEEEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEEC
T ss_pred HHHHHHHHhcCCCcEECC--------------CCCcEEEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEc
Confidence 899999999886665532 233466777764 3666677777 9999999998864 478999998
Q ss_pred cCChHHHHHHHHHHHHHHhchhc
Q 018172 331 LSREEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 331 ~~~~e~~~~~~~~l~~~~~~~~~ 353 (360)
+ +++++++++++|+++..+.-.
T Consensus 323 ~-~~~~~~~l~~al~~~~~~~~~ 344 (350)
T 3fkd_A 323 Q-RPAQNQLFIKALETFLEKYEG 344 (350)
T ss_dssp C-CHHHHHHHHHHHHHHHTC---
T ss_pred C-CHHHHHHHHHHHHHHHHHhcc
Confidence 4 788899999999999887643
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=281.00 Aligned_cols=290 Identities=14% Similarity=0.171 Sum_probs=231.5
Q ss_pred HH-HHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 39 PE-LAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~-lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
++ +|++++++++. +|..+++ ++|++|+|+++++..++..++++||+ |+++.|+|..+...++..|.+++.++.
T Consensus 66 ~~~lr~~la~~l~~~~g~~~~~-~~v~~t~g~~~al~~~~~~l~~~gd~----vl~~~p~y~~~~~~~~~~g~~~~~v~~ 140 (390)
T 1d2f_A 66 NDEFLAAIAHWFSTQHYTAIDS-QTVVYGPSVIYMVSELIRQWSETGEG----VVIHTPAYDAFYKAIEGNQRTVMPVAL 140 (390)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCG-GGEEEESCHHHHHHHHHHHSSCTTCE----EEEEESCCHHHHHHHHHTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHhcCCCCCH-HHEEEcCCHHHHHHHHHHHhcCCCCE----EEEcCCCcHHHHHHHHHCCCEEEEeec
Confidence 78 99999999864 4555554 58999999999999999999999998 999999999999999999999998886
Q ss_pred Cccc----ccc-------C-CCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC-----CcCCCC
Q 018172 117 DANT----FDK-------N-NGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY-----TPITGA 175 (360)
Q Consensus 117 ~~~~----~~~-------~-~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~-----~~~~~~ 175 (360)
+.++ ++. + .++++|++++||||||.+++ +.+.++|+++|+++|+||+|.+..+ .++...
T Consensus 141 ~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 220 (390)
T 1d2f_A 141 EKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV 220 (390)
T ss_dssp EECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT
T ss_pred ccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHc
Confidence 5331 221 2 37899999999999999988 4567788889999999999986322 222221
Q ss_pred C-C-ccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHh-hccc-cCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 176 A-D-HDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIE-LGSI-GVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 176 ~-~-~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
. + .+. +.|+||.+|++|+|+||++++++++++.+..... ..++ +.+.+.|.++.++++.. ..++++.++.+
T Consensus 221 ~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~ 295 (390)
T 1d2f_A 221 ARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG----APWLDALRIYL 295 (390)
T ss_dssp CCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred chhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 1 1 144 9999999999999999999855889898887765 3444 78889998888888731 37899999999
Q ss_pred HHHHHHHHHHHHh-cCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHH-hhCeeeeCCCCCCC-CCC
Q 018172 252 SERWNMLRQVIRQ-SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLR-AERIMARGGRRFGA-DAK 324 (360)
Q Consensus 252 ~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~-~~gI~~~pg~~f~~-~~~ 324 (360)
+++++++.+.|++ ++++.+..+.+++ ++|+++++ ...+.+.|. ++||.++||..|+. .++
T Consensus 296 ~~~~~~l~~~L~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~ 362 (390)
T 1d2f_A 296 KDNLTYIADKMNAAFPELNWQIPQSTY-------------LAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRG 362 (390)
T ss_dssp HHHHHHHHHHHHHHCSSCCCCCCSBCS-------------EEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTT
T ss_pred HHHHHHHHHHHHhhCCCCEEecCCccE-------------EEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCC
Confidence 9999999999998 6666655554443 56777653 355666666 68999999998863 467
Q ss_pred eEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 325 YARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 325 ~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
++|||++.+++++++++++|.+++.+.
T Consensus 363 ~~Ris~~~~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 363 FVRLNAGCPRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 999999888999999999999998754
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=284.40 Aligned_cols=298 Identities=19% Similarity=0.217 Sum_probs=239.4
Q ss_pred ccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHH
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETD 105 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~ 105 (360)
|++..|. +++|+++++++.. +|.++++ ++|++|+|+++++..++..++++||+ |+++.|+|..+...++
T Consensus 71 y~~~~~~-----~~l~~~la~~~~~~~g~~~~~-~~v~~t~g~t~a~~~~~~~~~~~gd~----vl~~~p~~~~~~~~~~ 140 (407)
T 2zc0_A 71 YTPANGI-----PELREELAAFLKKYDHLEVSP-ENIVITIGGTGALDLLGRVLIDPGDV----VITENPSYINTLLAFE 140 (407)
T ss_dssp CCCTTCC-----HHHHHHHHHHHHHHSCCCCCG-GGEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCHHHHHHHH
T ss_pred CCCCCCC-----HHHHHHHHHHHHHhcCCCCCc-ceEEEecCHHHHHHHHHHHhcCCCCE----EEEeCCChHHHHHHHH
Confidence 7777777 9999999999843 3444444 58999999999999999999999998 9999999999999999
Q ss_pred HhCCeeeeecCCcccccc-------C----C--CeeEE-EEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCC
Q 018172 106 YLRSGLYKWDGDANTFDK-------N----N--GAYIE-VVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWP 167 (360)
Q Consensus 106 ~~g~~~~~~~~~~~~~~~-------~----~--~~~~i-~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~ 167 (360)
..|++++.++.+.++++. + + ++++| ++++|+||||.+++. .+.++|+++|+++|+|++|.+.
T Consensus 141 ~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 220 (407)
T 2zc0_A 141 QLGAKIEGVPVDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFM 220 (407)
T ss_dssp TTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTS
T ss_pred HcCCEEEEcccCCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 999999988865433221 2 3 68887 578999999999983 5678888899999999999853
Q ss_pred CC-----CcCC--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCc
Q 018172 168 QY-----TPIT--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 168 ~~-----~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
.+ .++. +..++++++.|+||.++ +|+|+||+++ ++++++.+.......+.+.+++.|.++.++++.. .+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 296 (407)
T 2zc0_A 221 RYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRIGWIIA-EGEILKKVLMQKQPIDFCAPAISQYIALEYLKRG--YF 296 (407)
T ss_dssp BSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCCEEEEC-CHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTT--HH
T ss_pred ccCCCCCCChhhcCCCCCEEEEcccccccC-CCcceEEEec-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcC--Cc
Confidence 22 1221 23357899999999999 9999999999 7999999988877677788999999999988732 23
Q ss_pred h-hHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhh-Ceeee
Q 018172 241 P-NFFEYGRRLMSERWNMLRQVIRQS-GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAE-RIMAR 314 (360)
Q Consensus 241 ~-~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~-gI~~~ 314 (360)
+ .++++.++.++++++++.+.|++. +++.+..|.++ +|+|+++++ ...+.+.|.++ ||.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~l~~~~gi~v~ 363 (407)
T 2zc0_A 297 EKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAG-------------MFVMFFLPEGADGISFANELMEREGVVVV 363 (407)
T ss_dssp HHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBS-------------SEEEEECSTTCCHHHHHHHHHHHTCEECB
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCc-------------EEEEEEcCCCCCHHHHHHHHHHhCCeEEE
Confidence 3 567788999999999999999874 55554444433 378888864 25667777777 99999
Q ss_pred CCCCCCC---CCCeEEEEecC-ChHHHHHHHHHHHHHHhch
Q 018172 315 GGRRFGA---DAKYARVSMLS-REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 315 pg~~f~~---~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~ 351 (360)
||..|+. .++++||+++. +++++++++++|++++++.
T Consensus 364 ~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 364 PGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp CSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHHHH
T ss_pred CchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 9988853 36799999977 7999999999999998654
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=285.12 Aligned_cols=297 Identities=16% Similarity=0.164 Sum_probs=230.3
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|++..|. ++||+++++++.....+- ..++|++|+|+++++..++..++++||+ |+++.|+|..+...+
T Consensus 74 ~~y~~~~g~-----~~lr~~ia~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l~~~gd~----Vl~~~p~~~~~~~~~ 143 (418)
T 3rq1_A 74 VGYAPIAGI-----PDFLCAAEKECFGNFRPE-GHIRSIATAGGTGGIHHLIHNYTEPGDE----VLTADWYWGAYRVIC 143 (418)
T ss_dssp HSCCCTTCC-----HHHHHHHHHHHHGGGCCS-SEEEEEEESHHHHHHHHHHHHHSCTTCE----EEEESSCCTHHHHHH
T ss_pred CCCCCCCCh-----HHHHHHHHHHHhcccCcc-ccccEEECCchHHHHHHHHHHhcCCCCE----EEECCCCchhHHHHH
Confidence 468888887 999999999864322111 1238999999999999999999999998 999999999999999
Q ss_pred HHhCCeeeeecCCcc--cccc-------C----CCee-EEEEcCC-CCCCcccch-H---HHHHHhh------hcCcEEE
Q 018172 105 DYLRSGLYKWDGDAN--TFDK-------N----NGAY-IEVVNSP-NNPDGTIRE-A---VLAKVNR------SAEGKLI 159 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~--~~~~-------~----~~~~-~i~~~~p-~NPtG~~~~-~---~~~~~~~------~~~~~li 159 (360)
+..|.+++.++.+.+ +++. + ++++ ++++++| |||||.+++ + .+.++|+ ++|+++|
T Consensus 144 ~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li 223 (418)
T 3rq1_A 144 SDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIG 223 (418)
T ss_dssp HHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred HHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEE
Confidence 999999999987433 2322 1 1455 7899999 999999998 3 3345565 7999999
Q ss_pred EeecccCCCCC-----cC----CCCCCc--cEEEeccccccCCCCceEEEEee--cCHHHHHHHHHHHhhc----cccCC
Q 018172 160 HDLAYYWPQYT-----PI----TGAADH--DIMLFTLSKCTGHAGSRIGWALV--KDTEVARKMTRFIELG----SIGVS 222 (360)
Q Consensus 160 ~D~ay~~~~~~-----~~----~~~~~~--~i~~~S~sK~~~~~G~r~G~~~~--~~~~~~~~l~~~~~~~----~~~~~ 222 (360)
+||+|.+..+. ++ .+..++ +++++||||.+|++|+|+||+++ +++++++.+....... ..+.+
T Consensus 224 ~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
T 3rq1_A 224 IDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNIC 303 (418)
T ss_dssp EECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred EecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 99999743221 11 122334 58899999999999999999987 3789999887765432 24588
Q ss_pred hHHHHHHHHHhcccC--CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchH
Q 018172 223 KESQLRAAKILGIVS--DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDE 300 (360)
Q Consensus 223 ~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (360)
.++|.++.++++... +.+..+++++++.++++++++.+.|+++ ++.+..+.+++ |+|+++++..
T Consensus 304 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-------------~~~~~~~~~~ 369 (418)
T 3rq1_A 304 RPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPMLPYRGGF-------------FITIPTDSAN 369 (418)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCCSSS-------------EEEEECTTHH
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCceE-------------EEEcCCCCHH
Confidence 899999988887321 1123455678899999999999999988 56655555554 6788777666
Q ss_pred HHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHHhch
Q 018172 301 DCEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 301 ~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~ 351 (360)
.+.+.|.++||.++|| ++++|||++. +++++++++++|++++++.
T Consensus 370 ~~~~~l~~~gi~v~~g------~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 370 AICEELKKEHIYVIAL------ANGIRIAACGIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHHHHHHHTTEECEEC------SSEEEEEGGGSCHHHHTTHHHHHHHHHHHT
T ss_pred HHHHHHHhCCEEEecC------CCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 6677889999999996 4689999985 9999999999999998764
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=277.74 Aligned_cols=277 Identities=20% Similarity=0.227 Sum_probs=229.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
.+++|++++++++. ++++|++|+|++++++.++..++++||+ |+++.|+|..+...++..|++++.++.+
T Consensus 53 ~~~l~~~la~~~~~------~~~~i~~~~g~~~a~~~~~~~l~~~gd~----vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 122 (354)
T 3ly1_A 53 ILMLGNKLAAHHQV------EAPSILLTAGSSEGIRAAIEAYASLEAQ----LVIPELTYGDGEHFAKIAGMKVTKVKML 122 (354)
T ss_dssp HHHHHHHHHHHTTS------CGGGEEEESHHHHHHHHHHHHHCCTTCE----EEEESSSCTHHHHHHHHTTCEEEEECCC
T ss_pred hHHHHHHHHHHhCC------ChHHEEEeCChHHHHHHHHHHHhCCCCe----EEECCCCchHHHHHHHHcCCEEEEecCC
Confidence 39999999999985 5569999999999999999999999998 9999999999999999999999999876
Q ss_pred cc-cccc-------C--CCeeEEEEcCCCCCCcccch-HHHHHHhhh--cCcEEEEeecccCCCCC----cC---CCCC-
Q 018172 118 AN-TFDK-------N--NGAYIEVVNSPNNPDGTIRE-AVLAKVNRS--AEGKLIHDLAYYWPQYT----PI---TGAA- 176 (360)
Q Consensus 118 ~~-~~~~-------~--~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~--~~~~li~D~ay~~~~~~----~~---~~~~- 176 (360)
.+ +++. + +++++|++++||||||.+++ +.+.++++. +|+++|+|++|.+.... +. ....
T Consensus 123 ~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
T 3ly1_A 123 DNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGA 202 (354)
T ss_dssp TTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTC
T ss_pred CCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcC
Confidence 32 2221 2 68999999999999999998 444444443 99999999999853222 11 1233
Q ss_pred CccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHH
Q 018172 177 DHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWN 256 (360)
Q Consensus 177 ~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (360)
+++++++|+||.+|++|+|+||+++ ++++++.+...... ++.|.+.|.++.++++ .. .++++.+++++++++
T Consensus 203 ~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~---~~--~~~~~~~~~~~~~~~ 274 (354)
T 3ly1_A 203 ENIILLKTFSKIHAMAGMRVGYAVA-HPTVIALMGRYVAG--EKINFSGVDAALASMN---DS--AFITYSKKSNDVSRQ 274 (354)
T ss_dssp SSEEEEEESSSTTCCGGGCCEEEEC-CHHHHHHHGGGTTC--SCCCHHHHHHHHHHTT---CH--HHHHHHHHHHHHHHH
T ss_pred CCEEEEeeChhhccChhhhheeeec-CHHHHHHHHHhcCC--CCCCHHHHHHHHHHhc---CH--HHHHHHHHHHHHHHH
Confidence 7889999999999999999999999 89999999877654 6889999999999887 32 789999999999999
Q ss_pred HHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChH
Q 018172 257 MLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-DEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREE 335 (360)
Q Consensus 257 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e 335 (360)
++.+.|+++ ++.+.. +.++|+|+++++ ...+.+.|.++||.++ |..++ .++++|+|++ +++
T Consensus 275 ~l~~~l~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~-g~~~~-~~~~iRis~~-~~~ 336 (354)
T 3ly1_A 275 ILLKALEDL-KLPYLP--------------SEGNFVFHQLVVPLKDYQTHMADAGVLIG-RAFPP-ADNWCRISLG-TPQ 336 (354)
T ss_dssp HHHHHHHHH-TCCBCC--------------CCSSEEEEECSSCHHHHHHHHHHTTEECC-CCCTT-CTTEEEEECC-CHH
T ss_pred HHHHHHHHC-CCeECC--------------CCceEEEEECCCCHHHHHHHHHHCCEEEe-ecCCC-CCCEEEEEcC-CHH
Confidence 999999988 444332 334578888874 4777788888999999 77555 5789999985 889
Q ss_pred HHHHHHHHHHHHHhc
Q 018172 336 IFNIFLERLSAIQGG 350 (360)
Q Consensus 336 ~~~~~~~~l~~~~~~ 350 (360)
++++++++|++++++
T Consensus 337 ~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 337 EMQWVADTMREFRKK 351 (354)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=284.15 Aligned_cols=292 Identities=15% Similarity=0.105 Sum_probs=226.8
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEE--cCChHHHHHHHHHhhc---CCCCCCCceEEEeCCCC
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVI--GTGSTQLYQAALYALS---SPGGPEPISVVSAAPYY 97 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~--t~G~t~~l~~~~~~l~---~~gd~~~~~vl~~~p~~ 97 (360)
...|++..|. +++|++++++++. +|..+++ ++|++ |+|+++++++++..+. ++||+ |++++|+|
T Consensus 64 ~~~Y~~~~g~-----~~lr~~ia~~~~~~~~~~~~~-~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~----Vlv~~p~~ 133 (401)
T 7aat_A 64 DKEYLPIAGL-----ADFTRASAELALGENSEAFKS-GRYVTVQGISGTGSLRVGANFLQRFFKFSRD----VYLPKPSW 133 (401)
T ss_dssp CCCCCCTTCC-----HHHHHHHHHHHHCTTCHHHHT-TCEEEEEEEHHHHHHHHHHHHHHHHCTTCCE----EEEEESCC
T ss_pred ccCCCCCCCC-----HHHHHHHHHHhcCCCcccccc-CceEEEecCcchHHHHHHHHHHHHhccCCCE----EEEcCCCc
Confidence 3458887887 9999999999864 3444444 48977 9999999999887764 88998 99999999
Q ss_pred CCcHHHHHHhCCeeeeecCCc---ccccc----------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEE
Q 018172 98 SQYPAETDYLRSGLYKWDGDA---NTFDK----------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIH 160 (360)
Q Consensus 98 ~~~~~~~~~~g~~~~~~~~~~---~~~~~----------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~ 160 (360)
..+...++..|.+++.++.+. .+++. .++++++++++||||||.+++ +.+.++|+++|+++|+
T Consensus 134 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 213 (401)
T 7aat_A 134 GNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYF 213 (401)
T ss_dssp TTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 999999999999999988642 22221 357899999999999999988 3556788889999999
Q ss_pred eecccCCCCCc-------C---CCCCCccEEEeccccccCCCCceEEEEee--cCHH----HHHHHHHHHhhccccCChH
Q 018172 161 DLAYYWPQYTP-------I---TGAADHDIMLFTLSKCTGHAGSRIGWALV--KDTE----VARKMTRFIELGSIGVSKE 224 (360)
Q Consensus 161 D~ay~~~~~~~-------~---~~~~~~~i~~~S~sK~~~~~G~r~G~~~~--~~~~----~~~~l~~~~~~~~~~~~~~ 224 (360)
||+|.+..+.. + ....+++++++||||+||++|+|+||+++ .+++ +.+.+.........+.+..
T Consensus 214 Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (401)
T 7aat_A 214 DMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMN 293 (401)
T ss_dssp EESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred ccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChH
Confidence 99998644321 1 24567899999999999999999999886 3555 5566666666667778888
Q ss_pred HHHHHHHHhccc--CCCchhHHHHHHHHHHHHHHHHHHHHHhcC---CcccCCCCCcccccccccCCCCCCcccccCCch
Q 018172 225 SQLRAAKILGIV--SDDYPNFFEYGRRLMSERWNMLRQVIRQSG---VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED 299 (360)
Q Consensus 225 ~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (360)
.|.++..+++.. ...+..++++.+++++++++++.+.|++++ .+....|.+++ |+|++++.
T Consensus 294 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~-------------~~~~~~~~- 359 (401)
T 7aat_A 294 GARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGM-------------FCFTGLKP- 359 (401)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSS-------------EEECCCCH-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcce-------------EEecCCCH-
Confidence 888887777521 001136788999999999999999999873 23333343333 67877753
Q ss_pred HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHH
Q 018172 300 EDCEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQ 348 (360)
Q Consensus 300 ~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~ 348 (360)
+.+..+++++||.+.|+ +|+|++. +++++++++++|++++
T Consensus 360 ~~~~~ll~~~gi~v~~~---------~Ris~~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 360 EQVERLTKEFSIYMTKD---------GRISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHCEECCTT---------CEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEeccCC---------CeEEeccCChhhHHHHHHHHHHHh
Confidence 66777888999999763 6999976 7777999999999876
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=276.92 Aligned_cols=279 Identities=18% Similarity=0.235 Sum_probs=232.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
.+++|++++++++.. ++++|++|+|++++++.++..++++||+ |+++.|+|..+...++..|++++.++.+
T Consensus 69 ~~~l~~~la~~~g~~-----~~~~i~~~~g~t~a~~~~~~~~~~~gd~----Vl~~~~~~~~~~~~~~~~g~~~~~v~~~ 139 (367)
T 3euc_A 69 SEALRAKLKEVMQVP-----AGMEVLLGNGSDEIISMLALAAARPGAK----VMAPVPGFVMYAMSAQFAGLEFVGVPLR 139 (367)
T ss_dssp HHHHHHHHHHHHTCC-----TTCEEEEEEHHHHHHHHHHHHTCCTTCE----EEEEESCSCCSCHHHHTTTCEEEEEECC
T ss_pred HHHHHHHHHHHhCCC-----CcceEEEcCCHHHHHHHHHHHHcCCCCE----EEEcCCCHHHHHHHHHHcCCeEEEecCC
Confidence 399999999999741 3458999999999999999999999998 9999999999999999999999999876
Q ss_pred cc-cccc-------CC-CeeEEEEcCCCCCCcccch----HHHHHHhhhc--CcEEEEeecccCCC---CCcCCCCCCcc
Q 018172 118 AN-TFDK-------NN-GAYIEVVNSPNNPDGTIRE----AVLAKVNRSA--EGKLIHDLAYYWPQ---YTPITGAADHD 179 (360)
Q Consensus 118 ~~-~~~~-------~~-~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~--~~~li~D~ay~~~~---~~~~~~~~~~~ 179 (360)
.+ .++. ++ ++++|++++||||||.+++ +.+.++|+++ |+++|+|++|.+.. ..+.....+++
T Consensus 140 ~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 219 (367)
T 3euc_A 140 ADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNL 219 (367)
T ss_dssp TTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTE
T ss_pred CCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCE
Confidence 53 2222 23 7899999999999999987 3455678888 99999999998532 22233556788
Q ss_pred EEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHH
Q 018172 180 IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLR 259 (360)
Q Consensus 180 i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (360)
+++.|+||. +++|+|+||+++ ++++++.+..... .++.|.+.|.++.++++. ..++++.+++++++++++.
T Consensus 220 i~~~s~sK~-~~~G~r~G~~~~-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~~~~~l~ 290 (367)
T 3euc_A 220 LVMRTVSKL-GLAGIRLGYVAG-DPQWLEQLDKVRP--PYNVNVLTEATALFALEH-----VAVLDEQAAQLRAERSRVA 290 (367)
T ss_dssp EEEEECCCT-TSCSCCEEEEEE-CHHHHHHHGGGCC--SSCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchhh-cccccCceeeee-CHHHHHHHHHhCC--CCCCCHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHHHH
Confidence 999999999 889999999999 8999988876653 567899999999998873 3889999999999999999
Q ss_pred HHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCC-CCCeEEEEecCChHHHH
Q 018172 260 QVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGA-DAKYARVSMLSREEIFN 338 (360)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~-~~~~~R~s~~~~~e~~~ 338 (360)
+.|++++++.+. + +.++|+|+++++...+.+.|.++||.++||..|+. ..+++|+|++ ++++++
T Consensus 291 ~~l~~~~g~~~~-~-------------~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~ 355 (367)
T 3euc_A 291 EGMAAHGGVTVF-P-------------SAANFLLARVPDAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS-TPEENA 355 (367)
T ss_dssp HHHHTSTTCEEC-C-------------CSSSEEEEECSCHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC-CHHHHH
T ss_pred HHHHhCCCcEEC-C-------------CCCeEEEEECCCHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC-CHHHHH
Confidence 999998665532 2 23447888887557778888999999999988753 5789999985 899999
Q ss_pred HHHHHHHHHHh
Q 018172 339 IFLERLSAIQG 349 (360)
Q Consensus 339 ~~~~~l~~~~~ 349 (360)
+++++|++++.
T Consensus 356 ~~~~~l~~~l~ 366 (367)
T 3euc_A 356 QFLEAFAASLQ 366 (367)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999999875
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=284.60 Aligned_cols=293 Identities=20% Similarity=0.200 Sum_probs=221.9
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|++..|. ++||+++++++. .|. + ++++|++|+|+++++..++. ++++||+ |+++.|+|..+...+
T Consensus 69 ~~y~~~~g~-----~~lr~~la~~l~-~g~-~-~~~~v~~~~G~~~al~~~~~-~~~~gd~----Vl~~~p~y~~~~~~~ 135 (400)
T 3asa_A 69 RGYGPDFGL-----PALRQKLSEDFY-RGF-V-DAKEIFISDGAKVDLFRLLS-FFGPNQT----VAIQDPSYPAYLDIA 135 (400)
T ss_dssp CCCCCTTCC-----HHHHHHHHHTTS-TTS-S-CGGGEEEESCHHHHHHHHHH-HHCSSCE----EEEEESCCHHHHHHH
T ss_pred cCCCCCCCC-----HHHHHHHHHHHH-cCC-C-CHHHEEEccChHHHHHHHHH-HcCCCCE----EEECCCCcHHHHHHH
Confidence 457766676 999999999954 333 3 34689999999999998664 5578888 999999999999999
Q ss_pred HHhCCe-eeeecCCcc-ccccC----CCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCC-----
Q 018172 105 DYLRSG-LYKWDGDAN-TFDKN----NGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQY----- 169 (360)
Q Consensus 105 ~~~g~~-~~~~~~~~~-~~~~~----~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~----- 169 (360)
+..|.+ ++.++.+.+ ++..+ +++++|++++||||||.+++. .+.++|+++|+++|+|++|.+...
T Consensus 136 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~ 215 (400)
T 3asa_A 136 RLTGAKEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLP 215 (400)
T ss_dssp HHTTCSEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSC
T ss_pred HHcCCcceEecccchhcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCC
Confidence 999998 998887643 33321 578999999999999999983 456778889999999999984211
Q ss_pred CcCCCC---CCccEEEeccccccCCCCceEEEEeecCHHH-------HHHHHHHHhhc-cccCChHHHHHHHHHhcccCC
Q 018172 170 TPITGA---ADHDIMLFTLSKCTGHAGSRIGWALVKDTEV-------ARKMTRFIELG-SIGVSKESQLRAAKILGIVSD 238 (360)
Q Consensus 170 ~~~~~~---~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~-------~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 238 (360)
.++... .++++++.|+||.+|++|+|+||+++ ++++ ++.+....... ..+.|.+.|.++.++++.
T Consensus 216 ~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--- 291 (400)
T 3asa_A 216 KSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVI-PQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSI--- 291 (400)
T ss_dssp SSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEEC-CTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---
T ss_pred CchhhCCCCCCceEEEecchhhcCCcchheeEEee-ChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCc---
Confidence 122221 35689999999999999999999998 6666 56654332222 236899999999888872
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCccccc-CCch----HHHHHHHHhhCeee
Q 018172 239 DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLE-SKED----EDCEKLLRAERIMA 313 (360)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~l~~~gI~~ 313 (360)
.++++.++.++++++++.+.|+++ ++.+..+.+ ++|+|++ +++. +.+..+++++||.+
T Consensus 292 ---~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v 354 (400)
T 3asa_A 292 ---LPQLEAIHYYRENSDLLRKALLAT-GFEVFGGEH-------------APYLWVKPTQANISDRDLFDFFLREYHIAI 354 (400)
T ss_dssp ---TTTCHHHHHHHHHHHHHHHHHHHT-TCEEEECSS-------------SSEEEEECCCTTCCTTTHHHHHHHHHSEEC
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCC-------------ceEEEEeccCCCCCHHHHHHHHHHhCCEEE
Confidence 256788899999999999999987 444433333 3478888 7642 34445556679999
Q ss_pred eCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 314 RGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 314 ~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
.||..|+. .++++|||+..++|++++++++|++++++.
T Consensus 355 ~~g~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 355 TPGIGFGRSGSGFVRFSSLGKREDILAACERLQMAPALQ 393 (400)
T ss_dssp EEGGGGCGGGTTCEEEECCSCHHHHHHHHHHHHC-----
T ss_pred eChhHhCCCCCCEEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 99998864 467999997679999999999999998764
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=276.15 Aligned_cols=287 Identities=14% Similarity=0.190 Sum_probs=232.3
Q ss_pred HHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
.++++++++++.. .|.++.+ ++|++|+|++++++.++..++++||+ |+++.|+|..+...++..|.+++.++.+
T Consensus 70 ~~~~~~l~~~l~~~~g~~~~~-~~v~~~~g~~~a~~~~~~~~~~~gd~----vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 144 (391)
T 4dq6_A 70 DSYNESIVNWLYRRHNWKIKS-EWLIYSPGVIPAISLLINELTKANDK----IMIQEPVYSPFNSVVKNNNRELIISPLQ 144 (391)
T ss_dssp HHHHHHHHHHHHHHHCCCCCG-GGEEEESCHHHHHHHHHHHHSCTTCE----EEECSSCCTHHHHHHHHTTCEEEECCCE
T ss_pred HHHHHHHHHHHHHHhCCCCcH-HHeEEcCChHHHHHHHHHHhCCCCCE----EEEcCCCCHHHHHHHHHcCCeEEeeeee
Confidence 8999999988653 4544444 58999999999999999999999998 9999999999999999999999998876
Q ss_pred --ccc---ccc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC-----CcCCCC-
Q 018172 118 --ANT---FDK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY-----TPITGA- 175 (360)
Q Consensus 118 --~~~---~~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~-----~~~~~~- 175 (360)
.++ ++. ++ +++|++++|+||||.+++ +.+.++|+++|+++|+|++|.+..+ .++...
T Consensus 145 ~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 223 (391)
T 4dq6_A 145 KLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASIS 223 (391)
T ss_dssp ECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred ecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcC
Confidence 222 221 23 899999999999999987 3556778889999999999985322 122211
Q ss_pred ---CCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh-ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 176 ---ADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL-GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 176 ---~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
.++++++.|+||.+|++|+|+||++++++++++.+...... ...+.+.+.|.++.++++. . ..++++.++++
T Consensus 224 ~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~--~~~~~~~~~~~ 299 (391)
T 4dq6_A 224 KEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNN--G--ESWLESFLEYL 299 (391)
T ss_dssp HHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH--C--HHHHHHHHHHH
T ss_pred ccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc--h--HHHHHHHHHHH
Confidence 35779999999999999999999998556899998877543 3457888999998888873 2 37899999999
Q ss_pred HHHHHHHHHHHHh-cCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhh-CeeeeCCCCCCC-CCC
Q 018172 252 SERWNMLRQVIRQ-SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAE-RIMARGGRRFGA-DAK 324 (360)
Q Consensus 252 ~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~-gI~~~pg~~f~~-~~~ 324 (360)
+++++++.+.|++ ++++.+..+.+++ ++|++++. ...+.+.|.++ ||.++||..|+. ..+
T Consensus 300 ~~~~~~l~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~ 366 (391)
T 4dq6_A 300 ESNIDFAIKYINENMPKLKVRKPEGTY-------------LLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSG 366 (391)
T ss_dssp HHHHHHHHHHHHHHCTTSEECCCSBSS-------------EEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTT
T ss_pred HHHHHHHHHHHHhhCCCCEecCCCccE-------------EEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCC
Confidence 9999999999988 5777766665544 56677753 26667777776 999999998975 468
Q ss_pred eEEEEecCChHHHHHHHHHHHHHH
Q 018172 325 YARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 325 ~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
++|++++.++|++++++++|.+++
T Consensus 367 ~iRis~~~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 367 YQRINLACPRSMLEEALIRIKNAI 390 (391)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHh
Confidence 999999889999999999999876
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=295.65 Aligned_cols=299 Identities=14% Similarity=0.166 Sum_probs=224.6
Q ss_pred ccccCCCCccccccHHHHHHHHHH-HhhcCC-C--CCCCCcEEEcCChHHHHHHHHHh-----hcCCCCCCCceEEEeCC
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNL-HHVVDN-A--VSDGRHIVIGTGSTQLYQAALYA-----LSSPGGPEPISVVSAAP 95 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~-~~~~~~-~--~~~~~~i~~t~G~t~~l~~~~~~-----l~~~gd~~~~~vl~~~p 95 (360)
..|+++.|. +++|+++++. +..++. . ..++++|++|+|+++++..++.. ++++||+ |++++|
T Consensus 132 ~~Y~~~~g~-----~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~----Vlv~~P 202 (546)
T 2zy4_A 132 CNYPVPPRM-----LNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDK----VAIGMP 202 (546)
T ss_dssp CSCCSSSSC-----CHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCE----EEEEES
T ss_pred CCCCCCcCC-----HHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcCCCCCE----EEEeCC
Confidence 469988887 8999998864 554432 1 22356999999999999999987 5789998 999999
Q ss_pred CCCCcHHHHHHh--CCeeeeecCCccc-ccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHh--hhcCcE
Q 018172 96 YYSQYPAETDYL--RSGLYKWDGDANT-FDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVN--RSAEGK 157 (360)
Q Consensus 96 ~~~~~~~~~~~~--g~~~~~~~~~~~~-~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~--~~~~~~ 157 (360)
+|+.+...+... |++++.++.+.++ +.. ++++++|++++||||||.+++. .+.++| +++|++
T Consensus 203 ~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ 282 (546)
T 2zy4_A 203 VFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLM 282 (546)
T ss_dssp CCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCE
T ss_pred CCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcE
Confidence 999999886654 6888888766443 211 3578999999999999999983 345666 669999
Q ss_pred EEEeecccCCCC--CcCCC-CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHH-------------H-------
Q 018172 158 LIHDLAYYWPQY--TPITG-AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRF-------------I------- 214 (360)
Q Consensus 158 li~D~ay~~~~~--~~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~-------------~------- 214 (360)
+|+||+|.+... .++.. ..++++++.||||.+|++|+|+||++++++++++.+.+. .
T Consensus 283 ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~ 362 (546)
T 2zy4_A 283 ILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVR 362 (546)
T ss_dssp EEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGG
T ss_pred EEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhcccccc
Confidence 999999995332 22211 246899999999999999999999999444477766321 1
Q ss_pred ----------------hhccccCChHHHHHHH-----HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q 018172 215 ----------------ELGSIGVSKESQLRAA-----KILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEY 273 (360)
Q Consensus 215 ----------------~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 273 (360)
...+.+.+.+.|.+++ ++++. . +.+.+++++.++++++.+.+.|. .+ +....+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~--~--~~~~~~~r~~~~~r~~~l~~~L~-~~-~~~~~~ 436 (546)
T 2zy4_A 363 SLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDE--A--DEYKHTLKQLIRRRETTLYRELG-MP-PLRDEN 436 (546)
T ss_dssp GCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCT--T--CHHHHHHHHHHHHHHHHHHGGGT-SS-CCCCTT
T ss_pred chhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhc--c--HHHHHHHHHHHHHHHHHHHHhcC-CC-cccCCC
Confidence 1223467888888743 33431 2 38999999999999999998885 42 222334
Q ss_pred CCcccccccccCCCCCCcccccCCc-------------------h-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-
Q 018172 274 PLEYCNFTGKFTNSHPGFAWLESKE-------------------D-EDCEKLLRAERIMARGGRRFGADAKYARVSMLS- 332 (360)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~- 332 (360)
.+++ |+|+++++ . +++.+++.++||.++||..|+..++++||+++.
T Consensus 437 ~~~~-------------~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~ 503 (546)
T 2zy4_A 437 AVDY-------------YTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLANL 503 (546)
T ss_dssp BCCS-------------EEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESSSS
T ss_pred CeeE-------------EEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEeccC
Confidence 4444 55665431 2 557889999999999999998767899999987
Q ss_pred ChHHHHHHHHHHHHHHhch
Q 018172 333 REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 333 ~~e~~~~~~~~l~~~~~~~ 351 (360)
+++++++++++|++++.+.
T Consensus 504 ~~e~i~~~~~~l~~~l~~~ 522 (546)
T 2zy4_A 504 NEYEYAAIGRALRKMADEL 522 (546)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998653
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-36 Score=285.21 Aligned_cols=301 Identities=17% Similarity=0.218 Sum_probs=235.0
Q ss_pred ccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCC--------------CCCce
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGG--------------PEPIS 89 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd--------------~~~~~ 89 (360)
..|++..|. ++||++++++++ .+|..+.+ ++|++|+|+++++++++..++++|| +
T Consensus 77 ~~y~~~~g~-----~~lr~~ia~~l~~~~g~~~~~-~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~---- 146 (444)
T 3if2_A 77 ANYSNPQGD-----SAFIDALVGFFNRHYDWNLTS-ENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKS---- 146 (444)
T ss_dssp HSCCCTTCC-----HHHHHHHHHHHHHHHCCCCCG-GGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEE----
T ss_pred hccCCCCCC-----HHHHHHHHHHHHhhcCCCCCH-HHEEEecCcHHHHHHHHHHHhCCCccccccccccccccce----
Confidence 458888887 999999999975 44666665 5899999999999999999998887 5
Q ss_pred EEEe-CCCCCCcHHH------HHHhCCeeeeecCCc-----------cccc-----cCCCeeEEEEcCCCCCCcccch--
Q 018172 90 VVSA-APYYSQYPAE------TDYLRSGLYKWDGDA-----------NTFD-----KNNGAYIEVVNSPNNPDGTIRE-- 144 (360)
Q Consensus 90 vl~~-~p~~~~~~~~------~~~~g~~~~~~~~~~-----------~~~~-----~~~~~~~i~~~~p~NPtG~~~~-- 144 (360)
|+++ .|+|..+... +...|.+++.++.+. +.+. .++++++|++++||||||.+++
T Consensus 147 vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~ 226 (444)
T 3if2_A 147 ILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDE 226 (444)
T ss_dssp EEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHH
T ss_pred EEEeCCCCccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHH
Confidence 7775 8999998874 344677877776543 3333 2467999999999999999998
Q ss_pred --HHHHHHhhhcCcEEEEeecccCCC----CCc-CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc
Q 018172 145 --AVLAKVNRSAEGKLIHDLAYYWPQ----YTP-ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG 217 (360)
Q Consensus 145 --~~~~~~~~~~~~~li~D~ay~~~~----~~~-~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~ 217 (360)
+.+.++|+++|+++|+|++|+.+. +.. .....++++++.||||. +++|+|+||+++ ++++++.+.......
T Consensus 227 ~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~-~~~l~~~~~~~~~~~ 304 (444)
T 3if2_A 227 EMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPGMRTGIIVA-DAKVIEAVSAMNAVV 304 (444)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGGGCCEEEEC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cCCCCceEEEEE-CHHHHHHHHHHHHhc
Confidence 345677888999999999998421 111 11346789999999996 779999999998 899999998888777
Q ss_pred cccCChHHHHHHHHHhcccCCCchhHHHH-HHHHHHHHHHHHHHHHHhc-CC--cccCCCCCcccccccccCCCCCCccc
Q 018172 218 SIGVSKESQLRAAKILGIVSDDYPNFFEY-GRRLMSERWNMLRQVIRQS-GV--FGLPEYPLEYCNFTGKFTNSHPGFAW 293 (360)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (360)
+++.+.+.|.++..+++. ..+..+..+ .++.++++++.+.+.|.+. +. +.+..+.+ ++|+|
T Consensus 305 ~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-------------g~~~~ 369 (444)
T 3if2_A 305 NLAPTRFGAAIATPLVAN--DRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEG-------------AIFLW 369 (444)
T ss_dssp HSSCCCHHHHHHHHHHHT--SHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCB-------------SSEEE
T ss_pred cCCCChHHHHHHHHHHHc--CchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCc-------------cEEEE
Confidence 788999999999998873 222344444 7778999999999998764 43 22333333 34788
Q ss_pred ccCCc----hHHHHHHHHhhCeeeeCCCCCCCC---------CCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 294 LESKE----DEDCEKLLRAERIMARGGRRFGAD---------AKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 294 ~~~~~----~~~~~~~l~~~gI~~~pg~~f~~~---------~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
++++. ...+.+.|.++||.++||+.|... .+++|||++.++|++++++++|.+++.+..
T Consensus 370 ~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~ 441 (444)
T 3if2_A 370 LWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRELY 441 (444)
T ss_dssp EEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 87764 266777888999999999988531 268999998899999999999999997654
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=285.38 Aligned_cols=292 Identities=14% Similarity=0.145 Sum_probs=225.7
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCC--cEEEcCChHHHHHHH--HHhhcCCCCCCCceEEEeCCCCCCc
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGR--HIVIGTGSTQLYQAA--LYALSSPGGPEPISVVSAAPYYSQY 100 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~--~i~~t~G~t~~l~~~--~~~l~~~gd~~~~~vl~~~p~~~~~ 100 (360)
..|++..|. +++|+++++++...+....+++ +|++|+|++++++.+ +..++++||+ |++++|+|.++
T Consensus 86 ~~Y~~~~g~-----~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~----Vlv~~p~~~~~ 156 (420)
T 4f4e_A 86 RGYLPIDGI-----AAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAK----VAISDPSWENH 156 (420)
T ss_dssp CCCCCTTCC-----HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCC----EEEEESCCHHH
T ss_pred CCCCCCCCc-----HHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCE----EEEeCCCcHhH
Confidence 458888887 9999999999864322111234 799999999999999 4566899999 99999999999
Q ss_pred HHHHHHhCCeeeeecC-Cc--cccc-----c--C---CCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeec
Q 018172 101 PAETDYLRSGLYKWDG-DA--NTFD-----K--N---NGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 101 ~~~~~~~g~~~~~~~~-~~--~~~~-----~--~---~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~a 163 (360)
...++..|++++.++. +. .+++ . + ++++++++++||||||.+++. .+.++|+++|+++|+|++
T Consensus 157 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~ 236 (420)
T 4f4e_A 157 RALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIA 236 (420)
T ss_dssp HHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccc
Confidence 9999999999999987 21 1221 1 2 678999999999999999882 456778889999999999
Q ss_pred ccCCCCC------c---CCCCCCccEEEeccccccCCCCceEEEEee--cCHHHHHH----HHHHHhhccccCChHHHHH
Q 018172 164 YYWPQYT------P---ITGAADHDIMLFTLSKCTGHAGSRIGWALV--KDTEVARK----MTRFIELGSIGVSKESQLR 228 (360)
Q Consensus 164 y~~~~~~------~---~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~--~~~~~~~~----l~~~~~~~~~~~~~~~~~~ 228 (360)
|.+..+. + +.+..+++++++||||.|+++|+|+||+++ +++++++. +.........+++.+.|.+
T Consensus 237 y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (420)
T 4f4e_A 237 YQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAI 316 (420)
T ss_dssp CTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHH
T ss_pred cccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHH
Confidence 9854332 1 113578899999999999999999999863 35666554 3333334556678899999
Q ss_pred HHHHhcccC--CCchhHHHHHHHHHHHHHHHHHHHHHhc---CCcccCCCCCcccccccccCCCCCCcccccCCchHHHH
Q 018172 229 AAKILGIVS--DDYPNFFEYGRRLMSERWNMLRQVIRQS---GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCE 303 (360)
Q Consensus 229 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (360)
+.+++.... +.++.++++++++++++++.+.+.|+++ +++.+..+.+++ |+|+.++. +.+.
T Consensus 317 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~-------------~~~~~~~~-~~~~ 382 (420)
T 4f4e_A 317 VAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGM-------------FSYSGLTS-AQVD 382 (420)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSS-------------EEECCCCH-HHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccE-------------EEEeCCCH-HHHH
Confidence 888777310 1124778999999999999999999988 244444444443 78888754 7788
Q ss_pred HHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHH
Q 018172 304 KLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQ 348 (360)
Q Consensus 304 ~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~ 348 (360)
+++.++||.++|+ .|+|++. +++++++++++|++++
T Consensus 383 ~~l~~~gI~v~~~---------~Ris~~~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 383 RLREEFGIYAVST---------GRICVAALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp HHHHHHCEECCTT---------SEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HHHHhCCEEecCC---------CeEEEecCCHHHHHHHHHHHHHHh
Confidence 8899999999984 2999987 8888999999999886
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-35 Score=270.22 Aligned_cols=274 Identities=18% Similarity=0.255 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCc
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDA 118 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~ 118 (360)
+++|++++++++. ++++|++|+|++++++.++..+ |+ |+++.|+|..+...++..|.+++.++.+.
T Consensus 64 ~~l~~~la~~~~~------~~~~i~~~~g~t~al~~~~~~~----d~----vi~~~~~~~~~~~~~~~~g~~~~~~~~~~ 129 (361)
T 3ftb_A 64 RRLNKSIENYLKL------KDIGIVLGNGASEIIELSISLF----EK----ILIIVPSYAEYEINAKKHGVSVVFSYLDE 129 (361)
T ss_dssp HHHHHHHHHHHTC------CSCEEEEESSHHHHHHHHHTTC----SE----EEEEESCCTHHHHHHHHTTCEEEEEECCT
T ss_pred HHHHHHHHHHhCC------CcceEEEcCCHHHHHHHHHHHc----Cc----EEEecCChHHHHHHHHHcCCeEEEeecCc
Confidence 9999999999975 4569999999999999999988 66 99999999999999999999999998775
Q ss_pred c-cccc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC------CcCCCCCCccE
Q 018172 119 N-TFDK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY------TPITGAADHDI 180 (360)
Q Consensus 119 ~-~~~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~------~~~~~~~~~~i 180 (360)
+ ++.. ++ ++++++++||||||.+++ +.+.++|+++|+++|+|++|.+... .......++++
T Consensus 130 ~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i 208 (361)
T 3ftb_A 130 NMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLF 208 (361)
T ss_dssp TSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEE
T ss_pred ccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEE
Confidence 4 3322 34 899999999999999988 2455677789999999999985332 12234567889
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQ 260 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (360)
+++|+||.++++|+|+||+++.++++++.+..... .++.|.+.|.++.++++ + ..++++.+++++++++++.+
T Consensus 209 ~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~---~--~~~~~~~~~~~~~~~~~l~~ 281 (361)
T 3ftb_A 209 IIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQN--PWNINCFAEMAAINCLK---D--TNYIEESLLWIKKERKRFIE 281 (361)
T ss_dssp EEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSC--TTCSCHHHHHHHHHTSS---C--HHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCC--CCCCCHHHHHHHHHHhc---C--HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999338999999987654 46888999999988887 2 38899999999999999999
Q ss_pred HHHhcCCcc-cCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCCCCC-CCCeEEEEecCChHH
Q 018172 261 VIRQSGVFG-LPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRRFGA-DAKYARVSMLSREEI 336 (360)
Q Consensus 261 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~f~~-~~~~~R~s~~~~~e~ 336 (360)
.|++++++. +..+. ++|+|+++++ ...+.+.|.++||.++||..|+. .++++|++++ ++++
T Consensus 282 ~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~ 346 (361)
T 3ftb_A 282 ELNKIGFIKRVFSPH--------------ANFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK-DEKK 346 (361)
T ss_dssp HHHHSSSEEEEECCS--------------SSEEEEEESSSCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHH
T ss_pred HHHhCCCCceecCCC--------------CeEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC-CHHH
Confidence 999987665 43332 3467777764 36777788888999999998864 4789999985 7778
Q ss_pred HHHHHHHHHHHHh
Q 018172 337 FNIFLERLSAIQG 349 (360)
Q Consensus 337 ~~~~~~~l~~~~~ 349 (360)
+++++++|+++.+
T Consensus 347 ~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 347 NTKFLRALKGVEN 359 (361)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888764
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=278.18 Aligned_cols=292 Identities=15% Similarity=0.082 Sum_probs=224.6
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCC--cEEEcCChHHHHHHHH--HhhcCCCCCCCceEEEeCCCCCCc
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGR--HIVIGTGSTQLYQAAL--YALSSPGGPEPISVVSAAPYYSQY 100 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~--~i~~t~G~t~~l~~~~--~~l~~~gd~~~~~vl~~~p~~~~~ 100 (360)
..|++..|. +++|++++++++..+....+++ +|++|+|++++++.++ ..++++||+ |+++.|+|..+
T Consensus 64 ~~y~~~~g~-----~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~----vl~~~p~~~~~ 134 (397)
T 3fsl_A 64 SLYLPMEGL-----NCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESG----VWVSDPTWENH 134 (397)
T ss_dssp CCCCCTTCC-----HHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCC----EEEESSCCHHH
T ss_pred ccCCCCCch-----HHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCe----EEEeCCCchhH
Confidence 458877887 9999999999864322111245 7999999999999994 456789998 99999999999
Q ss_pred HHHHHHhCCeeeeecCC---cccccc-------C---CCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeec
Q 018172 101 PAETDYLRSGLYKWDGD---ANTFDK-------N---NGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 101 ~~~~~~~g~~~~~~~~~---~~~~~~-------~---~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~a 163 (360)
...++..|.+++.++.+ ..+++. . ++++++++++||||||.+++. .+.++|+++|+++|+||+
T Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~ 214 (397)
T 3fsl_A 135 VAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIA 214 (397)
T ss_dssp HHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecC
Confidence 99999999999999872 212221 2 578899999999999999883 566788889999999999
Q ss_pred ccCCCCC------c---CCCCCCccEEEeccccccCCCCceEEEEee--cCHHHHHHHHH----HHhhccccCChHHHHH
Q 018172 164 YYWPQYT------P---ITGAADHDIMLFTLSKCTGHAGSRIGWALV--KDTEVARKMTR----FIELGSIGVSKESQLR 228 (360)
Q Consensus 164 y~~~~~~------~---~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~--~~~~~~~~l~~----~~~~~~~~~~~~~~~~ 228 (360)
|.+..+. + +.+..+++++++||||++|++|+|+||+++ .+.++++.+.. .......+.+.++|.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (397)
T 3fsl_A 215 YQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQV 294 (397)
T ss_dssp CTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHH
T ss_pred chhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 9864332 1 114578899999999999999999999974 35666654432 2223445668899999
Q ss_pred HHHHhcccC--CCchhHHHHHHHHHHHHHHHHHHHHHhcC---CcccCCCCCcccccccccCCCCCCcccccCCchHHHH
Q 018172 229 AAKILGIVS--DDYPNFFEYGRRLMSERWNMLRQVIRQSG---VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCE 303 (360)
Q Consensus 229 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (360)
+.+++.... ..+..++++.+++++++++++.+.|++++ ++.+..+.++ +|+|++++. +.+.
T Consensus 295 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-------------~~~~~~~~~-~~~~ 360 (397)
T 3fsl_A 295 VAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRG-------------MFSYTGLSA-AQVD 360 (397)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCS-------------SEEECCCCH-HHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCce-------------EEEecCCCH-HHHH
Confidence 888776210 01237789999999999999999999884 3444333333 478888754 6788
Q ss_pred HHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHH
Q 018172 304 KLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQ 348 (360)
Q Consensus 304 ~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~ 348 (360)
++|+++||.+.||. |+|++. +++++++++++|++++
T Consensus 361 ~~l~~~gi~v~~g~---------Ris~~~~~~~~i~~~~~~l~~~l 397 (397)
T 3fsl_A 361 RLREEFGVYLIASG---------RMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp HHHHTTCEECCTTC---------EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred HHHHhCCEEECCCC---------eEEEEecCHhhHHHHHHHHHhhC
Confidence 88999999999863 999987 8888999999998764
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=280.23 Aligned_cols=295 Identities=14% Similarity=0.067 Sum_probs=229.4
Q ss_pred cccccCCCCccccccHHHHHHHHHHH-hhcCCCCCCCCcEEE--cCChHHHHHH--HHHhhcCCCCCCCceEEEeCCCCC
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLH-HVVDNAVSDGRHIVI--GTGSTQLYQA--ALYALSSPGGPEPISVVSAAPYYS 98 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~-~~~~~~~~~~~~i~~--t~G~t~~l~~--~~~~l~~~gd~~~~~vl~~~p~~~ 98 (360)
...|.+..|. +++|+++++++ +....+++ +++|++ |+|+++++++ .+..++++||+ |++++|+|.
T Consensus 87 ~~~Y~~~~G~-----~~lr~~ia~~l~g~~~~~~~-~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~----Vlv~~p~~~ 156 (448)
T 3meb_A 87 NKEYPPVAGF-----PLFLEAAQFLMFGKDSKAAQ-EGRIASCQSLSGTGSLHIGFEFLHLWMPKAE----FYMPSTTWP 156 (448)
T ss_dssp CCSCCCTTCC-----HHHHHHHHHHHHCTTCHHHH-TTCEEEEEESHHHHHHHHHHHHHHHHCTTCC----EEEESSCCT
T ss_pred CCCCCCCcch-----HHHHHHHHHHhcCCCccccC-cCcEEEEECCcHHHHHHHHHHHHHHhCCCCE----EEECCCCCH
Confidence 3458888887 99999999987 53110011 458999 9999999988 45667889998 999999999
Q ss_pred CcHHHHH----HhCCeeeeecC-Ccc---cccc-------C---CCeeEEEEcCCCCCCcccchH----HHHHHhhhcCc
Q 018172 99 QYPAETD----YLRSGLYKWDG-DAN---TFDK-------N---NGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEG 156 (360)
Q Consensus 99 ~~~~~~~----~~g~~~~~~~~-~~~---~~~~-------~---~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~ 156 (360)
++..+++ ..|++++.++. +.+ +++. + ++++++++++||||||.+++. .+.++|+++|+
T Consensus 157 ~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~ 236 (448)
T 3meb_A 157 NHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKH 236 (448)
T ss_dssp HHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCC
Confidence 9999999 99999999987 443 2221 1 357888999999999999982 46678888999
Q ss_pred EEEEeecccCCCCCc----------CCCCCCccEEEeccccccCCCCceEEEE--ee--------cCH----HHHHHHHH
Q 018172 157 KLIHDLAYYWPQYTP----------ITGAADHDIMLFTLSKCTGHAGSRIGWA--LV--------KDT----EVARKMTR 212 (360)
Q Consensus 157 ~li~D~ay~~~~~~~----------~~~~~~~~i~~~S~sK~~~~~G~r~G~~--~~--------~~~----~~~~~l~~ 212 (360)
++|+|++|.+..+.. +.....+++++.||||+||++|+|+||+ ++ +++ ++++.+..
T Consensus 237 ~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~ 316 (448)
T 3meb_A 237 IAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL 316 (448)
T ss_dssp EEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH
Confidence 999999998643322 1134678899999999999999999998 65 455 67777777
Q ss_pred HHhhccccCChHHHHHHHHHhcccC--CCchhHHHHHHHHHHHHHHHHHHHHHhc--CC------cccCCCCCccccccc
Q 018172 213 FIELGSIGVSKESQLRAAKILGIVS--DDYPNFFEYGRRLMSERWNMLRQVIRQS--GV------FGLPEYPLEYCNFTG 282 (360)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~------~~~~~~~~~~~~~~~ 282 (360)
.......+++.+.|.++.++++... ..+..++++++++++++++++.+.|+++ ++ +....+.+
T Consensus 317 ~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~------- 389 (448)
T 3meb_A 317 QIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAI------- 389 (448)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCC-------
T ss_pred HHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCc-------
Confidence 6666777889999999999887310 1122568899999999999999999987 22 22223333
Q ss_pred ccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHHhc
Q 018172 283 KFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~ 350 (360)
++|+|+.++. +.+..+++++||.+.||+ .|||++. +++++++++++|.+++++
T Consensus 390 ------g~~~~~~~~~-~~~~~ll~~~gV~v~~G~--------gRis~a~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 390 ------GMFTFTGLTP-EHVDYLKEKWSIYLVKAG--------GRMSMCGLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp ------SSEEECCCCH-HHHHHHHHHHCEEECSGG--------GEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred ------eEEEecCCCH-HHHHHHHHhCCEEEeCCC--------cEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 3477887753 777778889999999975 2999987 888899999999999974
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=278.56 Aligned_cols=289 Identities=18% Similarity=0.253 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
.++++++++++. ..+.++.+ ++|++|+|++++++.++..++++||+ |+++.|+|..+...+...|.+++.++.+
T Consensus 99 ~~l~~~l~~~l~~~~g~~~~~-~~v~~~~g~~ea~~~a~~~~~~~gd~----Vi~~~~~y~~~~~~~~~~g~~~~~~~~~ 173 (421)
T 3l8a_A 99 DDLYQAVIDWERKEHDYAVVK-EDILFIDGVVPAISIALQAFSEKGDA----VLINSPVYYPFARTIRLNDHRLVENSLQ 173 (421)
T ss_dssp HHHHHHHHHHHHHHHCCCCCG-GGEEEESCHHHHHHHHHHHHSCTEEE----EEEEESCCHHHHHHHHHTTEEEEEEECE
T ss_pred HHHHHHHHHHHHHHhCCCCCH-HHEEEcCCHHHHHHHHHHHhcCCCCE----EEECCCCcHHHHHHHHHCCCEEEecccc
Confidence 889999998865 34555544 58999999999999999999999998 9999999999999999999999988764
Q ss_pred ---------cccccc--C-CCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC-----CCcCC---
Q 018172 118 ---------ANTFDK--N-NGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ-----YTPIT--- 173 (360)
Q Consensus 118 ---------~~~~~~--~-~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~-----~~~~~--- 173 (360)
.+.++. + +++++|++++|+||||.+++ +.+.++|+++|+++|+||+|.+.. ..++.
T Consensus 174 ~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 253 (421)
T 3l8a_A 174 IINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLD 253 (421)
T ss_dssp EETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred ccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcC
Confidence 122222 2 68999999999999999987 356678989999999999998532 12221
Q ss_pred -CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHh-hccccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 174 -GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIE-LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 174 -~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
+..++++++.|+||.++++|+|+||++++++++++.+..... ....+.|++++.++.++++. . +.++++.++.+
T Consensus 254 ~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~--~--~~~~~~~~~~~ 329 (421)
T 3l8a_A 254 ASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQY--G--KPWLEELKTVI 329 (421)
T ss_dssp TTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH--C--HHHHHHHHHHH
T ss_pred chhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhc--c--HHHHHHHHHHH
Confidence 224678999999999999999999999944999999987763 34457899999999888873 2 37899999999
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHH-HhhCeeeeCCCCCCC-CCCe
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLL-RAERIMARGGRRFGA-DAKY 325 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l-~~~gI~~~pg~~f~~-~~~~ 325 (360)
+++++++.+.|++++++....+.+.+ +.|++++. ...+.+.| +++||.+.||..|+. .+++
T Consensus 330 ~~~~~~l~~~L~~~~~i~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~ 396 (421)
T 3l8a_A 330 EGNIKLVIKELEAKTKIKVMEPEGTY-------------LVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYF 396 (421)
T ss_dssp HHHHHHHHHHHHHHCSCEEECCSBSS-------------EEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTE
T ss_pred HHHHHHHHHHHHhCCCceEeCCCeeE-------------EEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCE
Confidence 99999999999988777766665554 56677654 24555555 567999999999974 5789
Q ss_pred EEEEecCChHHHHHHHHHHHHHHh
Q 018172 326 ARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 326 ~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
+||+++.+++++++++++|.++++
T Consensus 397 iRi~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 397 ARLNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHC-
T ss_pred EEEEecCCHHHHHHHHHHHHHHHh
Confidence 999998899999999999999875
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=264.85 Aligned_cols=275 Identities=18% Similarity=0.254 Sum_probs=220.1
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|++. +. +++|++++++++.. .+ ++++|++|+|+++++..++..+ ||+ |+++ |+|..+...+
T Consensus 51 ~~y~~~-~~-----~~lr~~la~~~~~~--~~-~~~~v~~~~G~~~al~~~~~~~---gd~----Vl~~-p~y~~~~~~~ 113 (335)
T 1uu1_A 51 RIYYDS-PD-----EELIEKILSYLDTD--FL-SKNNVSVGNGADEIIYVMMLMF---DRS----VFFP-PTYSCYRIFA 113 (335)
T ss_dssp GSCCCS-SC-----HHHHHHHHHHHTCS--SC-CGGGEEEESSHHHHHHHHHHHS---SEE----EECS-SSCHHHHHHH
T ss_pred hcCCCC-ch-----HHHHHHHHHHcCCC--CC-CHHHEEEcCChHHHHHHHHHHh---CCc----EEEC-CCcHHHHHHH
Confidence 456543 45 99999999999843 22 3468999999999999999998 777 9999 9999999999
Q ss_pred HHhCCeeeeecCCcc-ccccC--CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCC---CCCcCCCCCC
Q 018172 105 DYLRSGLYKWDGDAN-TFDKN--NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWP---QYTPITGAAD 177 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~-~~~~~--~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~---~~~~~~~~~~ 177 (360)
+..|.+++.++.+.+ +++.+ +++++|++++||||||.+++ +.+.++++..| ++|+|++|.+. ......+..+
T Consensus 114 ~~~g~~~~~v~~~~~~~~d~~~l~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~ 192 (335)
T 1uu1_A 114 KAVGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYE 192 (335)
T ss_dssp HHHTCEEEECCCCTTSCCCCCCCCTTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCS
T ss_pred HHcCCeEEEeccCCCCCCCHHHcCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCC
Confidence 999999999887643 22222 47899999999999999999 56667777668 89999999842 1122234567
Q ss_pred ccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH
Q 018172 178 HDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNM 257 (360)
Q Consensus 178 ~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (360)
+++++.|+||.+|++|+|+||+++ ++++++.+..... .++.|.+.|.++.++++. ..++++.++++++++++
T Consensus 193 ~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~ 264 (335)
T 1uu1_A 193 NLAVIRTFSKAFSLAAQRVGYVVA-SEKFIDAYNRVRL--PFNVSYVSQMFAKVALDH-----REIFEERTKFIVEERER 264 (335)
T ss_dssp SEEEEEESTTTTTCGGGCCEEEEE-CHHHHHHHHHHSC--TTCSCHHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHH
T ss_pred CEEEEecchhhcCCcccCeEEEEe-CHHHHHHHHHhcC--CCCcCHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999 8999999887653 468899999999998873 26788999999999999
Q ss_pred HHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChH
Q 018172 258 LRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREE 335 (360)
Q Consensus 258 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e 335 (360)
+.+.|+++ ++.+. +. .++|+|+++++ ...+.+.|.++||.++| .++++|+|++ +++
T Consensus 265 l~~~L~~~-g~~~~-~~-------------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~------~~~~iRis~~-~~~ 322 (335)
T 1uu1_A 265 MKSALREM-GYRIT-DS-------------RGNFVFVFMEKEEKERLLEHLRTKNVAVRS------FREGVRITIG-KRE 322 (335)
T ss_dssp HHHHHHHH-TCCBC-CC-------------CSSEEEEECCTHHHHHHHHHHHHHTEEEEE------ETTEEEEECC-CHH
T ss_pred HHHHHHHC-CcEEc-CC-------------CCeEEEEECCCCCHHHHHHHHHHCCEEEEE------CCCeEEEEeC-CHH
Confidence 99999987 34432 22 23478888875 36677777889999998 2569999995 567
Q ss_pred HHHHHHHHHHHH
Q 018172 336 IFNIFLERLSAI 347 (360)
Q Consensus 336 ~~~~~~~~l~~~ 347 (360)
++++++++|+++
T Consensus 323 ~i~~~~~~l~~~ 334 (335)
T 1uu1_A 323 ENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHhh
Confidence 899999998764
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=272.47 Aligned_cols=292 Identities=13% Similarity=0.076 Sum_probs=221.9
Q ss_pred cccccCCCCccccccHHHHHHHHHHH-hhcCCCCCCCCcE--EEcCChHHHHHHHH---HhhcCCCCCCCceEEEeCCCC
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLH-HVVDNAVSDGRHI--VIGTGSTQLYQAAL---YALSSPGGPEPISVVSAAPYY 97 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~-~~~~~~~~~~~~i--~~t~G~t~~l~~~~---~~l~~~gd~~~~~vl~~~p~~ 97 (360)
...|++..|. ++||+++++++ +..+.+++ +++| ..|.|+++++..+. ..+.++||+ |++++|+|
T Consensus 72 ~~~y~~~~g~-----~~lr~~ia~~~~~~~~~~~~-~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~----Vlv~~p~y 141 (409)
T 4eu1_A 72 NMDYAPVTGI-----ASFVEEAQKLCFGPTCAALR-DGRIASCQTLGGTGALRIGGDLLNRFVANCNR----IYGPDVGY 141 (409)
T ss_dssp CCCCCCTTCC-----HHHHHHHHHHHHCSSCHHHH-TTCEEEEEESHHHHHHHHHHHHGGGTSSSCCE----EEEESSCC
T ss_pred cccCCCCCCc-----HHHHHHHHHHHcCCCchhhc-cCceeeeecccchHHHHHHHHHHHHhcCCCCE----EEEeCCCc
Confidence 3568888887 99999999986 43211111 3467 45899999988754 445688898 99999999
Q ss_pred CCcHHHHHHhCCeeeeecCCc-c--cccc----------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEE
Q 018172 98 SQYPAETDYLRSGLYKWDGDA-N--TFDK----------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIH 160 (360)
Q Consensus 98 ~~~~~~~~~~g~~~~~~~~~~-~--~~~~----------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~ 160 (360)
..+..+++..|++++.++.+. + +++. ..+++++++++||||||.+++. .+.++|+++|+++|+
T Consensus 142 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 221 (409)
T 4eu1_A 142 PNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFV 221 (409)
T ss_dssp THHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 999999999999999998631 1 2221 2356677889999999999982 466788889999999
Q ss_pred eecccCCCCCc----------CCCCCCccEEEeccccccCCCCceEEEE--eecCHH----HHHHHHHHHhhccccCChH
Q 018172 161 DLAYYWPQYTP----------ITGAADHDIMLFTLSKCTGHAGSRIGWA--LVKDTE----VARKMTRFIELGSIGVSKE 224 (360)
Q Consensus 161 D~ay~~~~~~~----------~~~~~~~~i~~~S~sK~~~~~G~r~G~~--~~~~~~----~~~~l~~~~~~~~~~~~~~ 224 (360)
||+|.+..+.. +.+..+++++++||||+||++|+|+||+ ++++++ +++.+.........+++.+
T Consensus 222 De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 301 (409)
T 4eu1_A 222 DMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLY 301 (409)
T ss_dssp EESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred eccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChH
Confidence 99998644322 1245678899999999999999999997 554777 6777777665566788899
Q ss_pred HHHHHHHHhcccC--CCchhHHHHHHHHHHHHHHHHHHHHHhcCC---cccCCCCCcccccccccCCCCCCcccccCCch
Q 018172 225 SQLRAAKILGIVS--DDYPNFFEYGRRLMSERWNMLRQVIRQSGV---FGLPEYPLEYCNFTGKFTNSHPGFAWLESKED 299 (360)
Q Consensus 225 ~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (360)
.|.++.++++... ..+..++++.+++++++++++.+.|++++. +.+..+.+++ |+|++++.
T Consensus 302 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~-------------~~~~~~~~- 367 (409)
T 4eu1_A 302 GAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGM-------------MAYTGLTR- 367 (409)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCSS-------------EEECCCCH-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCceE-------------EEEeCCCH-
Confidence 9999998887310 112356889999999999999999998842 3333344443 67777654
Q ss_pred HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHH
Q 018172 300 EDCEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQ 348 (360)
Q Consensus 300 ~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~ 348 (360)
+.+..+++++||.+.|| .|++++. +++++++++++|++++
T Consensus 368 ~~~~~ll~~~gv~v~p~---------~Ri~~~~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 368 EQVELLRSEYHIYMTLN---------GRAAVSGLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp HHHHHHHHHHCEECCTT---------CEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEcCC---------CEEEEEecCHhhHHHHHHHHHHHh
Confidence 66777888889999985 3899976 8888999999999876
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-34 Score=264.82 Aligned_cols=279 Identities=19% Similarity=0.183 Sum_probs=225.8
Q ss_pred HHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
.++|++++++++. +|..+.+ ++|++|+|+++++..++..++++||+ |++++|+|..+...++..|.+++.++.+
T Consensus 72 ~~l~~~la~~l~~~~g~~~~~-~~v~~~~G~~~al~~~~~~l~~~gd~----Vl~~~~~y~~~~~~~~~~g~~~~~v~~~ 146 (369)
T 3cq5_A 72 VELRDELAAYITKQTGVAVTR-DNLWAANGSNEILQQLLQAFGGPGRT----ALGFQPSYSMHPILAKGTHTEFIAVSRG 146 (369)
T ss_dssp HHHHHHHHHHHHHHHCCCCCG-GGEEEESHHHHHHHHHHHHHCSTTCE----EEEEESSCTHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHhhhhcccCCCCh-HhEEECCChHHHHHHHHHHhcCCCCE----EEEcCCChHHHHHHHHHcCCEEEEecCC
Confidence 8999999999653 3444444 58999999999999999999999998 9999999999999999999999998866
Q ss_pred cc-cccc-------CC-CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-Cc---CCCCCC-ccEEE
Q 018172 118 AN-TFDK-------NN-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-TP---ITGAAD-HDIML 182 (360)
Q Consensus 118 ~~-~~~~-------~~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-~~---~~~~~~-~~i~~ 182 (360)
.+ .++. ++ ++++|++++||||||.+++ +.+.++++.+++++|+|++|.+... .+ ..+..+ +++++
T Consensus 147 ~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~ 226 (369)
T 3cq5_A 147 ADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVS 226 (369)
T ss_dssp TTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEE
T ss_pred cCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEE
Confidence 43 2221 23 7899999999999999999 5677888888899999999986442 11 123345 78999
Q ss_pred eccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 018172 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVI 262 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (360)
.|+||.++++|+|+||+++ ++++++.+..... .++.|.+.|.++.++++. ..++++.+++++++++++.+.|
T Consensus 227 ~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~--~~~~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~~~~~l~~~L 298 (369)
T 3cq5_A 227 RTMSKAFDFAGGRLGYFVA-NPAFIDAVMLVRL--PYHLSALSQAAAIVALRH-----SADTLGTVEKLSVERVRVAARL 298 (369)
T ss_dssp EESSSTTSCGGGCCEEEEE-CTHHHHHHHTTSC--TTCSCHHHHHHHHHHHHT-----HHHHHTHHHHHHHHHHHHHHHH
T ss_pred EechHhcCCcccceEEEEe-CHHHHHHHHHcCC--CCCCCHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 7888888876543 457889999999888872 2678899999999999999999
Q ss_pred HhcCCcccCCCCCcccccccccCCCCCCcccccCC-chHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHH
Q 018172 263 RQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-EDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFL 341 (360)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~ 341 (360)
++. ++.+. + +.++|+|++++ +...+.+.|.++||.++|| + .++++|++++ +++++++++
T Consensus 299 ~~~-g~~~~-~-------------~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~---~-~~~~iRis~~-~~~~i~~~~ 358 (369)
T 3cq5_A 299 EEL-GYAVV-P-------------SESNFVFFGDFSDQHAAWQAFLDRGVLIRDV---G-IAGHLRTTIG-VPEENDAFL 358 (369)
T ss_dssp HHH-TCEEE-C-------------CSSSEEEEECCSSHHHHHHHHHHTTEECBCC---S-CTTEEEEECC-CHHHHHHHH
T ss_pred HhC-CCEEC-C-------------CCCeEEEEECCCCHHHHHHHHHHCCEEEEEC---C-CCCeEEEEeC-CHHHHHHHH
Confidence 886 34433 2 22347788776 3466777788999999998 2 2579999996 889999999
Q ss_pred HHHHHHHhc
Q 018172 342 ERLSAIQGG 350 (360)
Q Consensus 342 ~~l~~~~~~ 350 (360)
++|+++++.
T Consensus 359 ~~l~~~~~~ 367 (369)
T 3cq5_A 359 DAAAEIIKL 367 (369)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 999998754
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=271.30 Aligned_cols=294 Identities=14% Similarity=0.083 Sum_probs=225.6
Q ss_pred cccccCCCCccccccHHHHHHHHHHH-hhcCCCCCCCCcEEE--cCChHHHHHHHHH--hhcCCC-----CCCCceEEEe
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLH-HVVDNAVSDGRHIVI--GTGSTQLYQAALY--ALSSPG-----GPEPISVVSA 93 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~-~~~~~~~~~~~~i~~--t~G~t~~l~~~~~--~l~~~g-----d~~~~~vl~~ 93 (360)
...|.+..|. +++|+++++++ +.++..+.+ ++|++ |+|+++++..++. .++++| |+ |+++
T Consensus 67 ~~~y~~~~g~-----~~lr~~la~~~~~~~~~~~~~-~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~----Vl~~ 136 (412)
T 1ajs_A 67 NHEYLPILGL-----AEFRTCASRLALGDDSPALQE-KRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTP----VYVS 136 (412)
T ss_dssp CCCCCCTTCC-----HHHHHHHHHHHHCTTCHHHHT-TCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSC----EEEE
T ss_pred ccCCCCCCCC-----HHHHHHHHHHHhcCCCCccCC-CcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCe----EEEc
Confidence 3458777777 99999999998 444433344 48999 9999999999954 456788 88 9999
Q ss_pred CCCCCCcHHHHHHhCCe-eeeecCC---cccccc----------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcC
Q 018172 94 APYYSQYPAETDYLRSG-LYKWDGD---ANTFDK----------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAE 155 (360)
Q Consensus 94 ~p~~~~~~~~~~~~g~~-~~~~~~~---~~~~~~----------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~ 155 (360)
.|+|..+...++..|.+ ++.++.+ ..+++. .++++++++++||||||.+++. .+.++|+++|
T Consensus 137 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~ 216 (412)
T 1ajs_A 137 SPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRF 216 (412)
T ss_dssp ESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999 9988762 112211 1367888899999999999883 4667888899
Q ss_pred cEEEEeecccCCCCC-------cCC---CCCCccEEEeccccccCCCCceEEEEee--cCHH----HHHHHHHHHhhccc
Q 018172 156 GKLIHDLAYYWPQYT-------PIT---GAADHDIMLFTLSKCTGHAGSRIGWALV--KDTE----VARKMTRFIELGSI 219 (360)
Q Consensus 156 ~~li~D~ay~~~~~~-------~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~--~~~~----~~~~l~~~~~~~~~ 219 (360)
+++|+||+|.+..+. ++. ...++++++.|+||.+|++|+|+||+++ .+++ +++.+.........
T Consensus 217 ~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (412)
T 1ajs_A 217 LFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWS 296 (412)
T ss_dssp CEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTS
T ss_pred CEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccC
Confidence 999999999864332 121 2457889999999999988999999998 2565 55555554444444
Q ss_pred cCChHHHHHHHHHhcccC--CCchhHHHHHHHHHHHHHHHHHHHHHhcC---CcccCCCCCcccccccccCCCCCCcccc
Q 018172 220 GVSKESQLRAAKILGIVS--DDYPNFFEYGRRLMSERWNMLRQVIRQSG---VFGLPEYPLEYCNFTGKFTNSHPGFAWL 294 (360)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (360)
+.+.++|.++.++++... ..++.++++.+++++++++++.+.|++++ ++.+..+.++ +|+|+
T Consensus 297 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-------------~~~~~ 363 (412)
T 1ajs_A 297 NPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIG-------------MFSFT 363 (412)
T ss_dssp SCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCS-------------SEEEC
T ss_pred CCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCc-------------eEEEe
Confidence 568999999998887320 00235889999999999999999999885 2444333333 36777
Q ss_pred cCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHHhc
Q 018172 295 ESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 295 ~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~ 350 (360)
+++ .+.+..++.++||.+.|+ +|++++. +++++++++++|++++++
T Consensus 364 ~~~-~~~~~~~l~~~gv~v~~~---------~Ris~~~~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 364 GLN-PKQVEYLINQKHIYLLPS---------GRINMCGLTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp CCC-HHHHHHHHHTTCEECCTT---------SEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHhCCEEecCC---------cEEEeeeCCHHHHHHHHHHHHHHHHh
Confidence 765 467788888999999873 5999985 899999999999998864
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=271.41 Aligned_cols=291 Identities=15% Similarity=0.134 Sum_probs=221.9
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCC-CCCCCcEEE--cCChHHHHHHHHHhh--cCCCCCCCceEEEeCCCCCC
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNA-VSDGRHIVI--GTGSTQLYQAALYAL--SSPGGPEPISVVSAAPYYSQ 99 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~-~~~~~~i~~--t~G~t~~l~~~~~~l--~~~gd~~~~~vl~~~p~~~~ 99 (360)
..|++..|. ++||+++++++...+.. ++ +++|++ |+|++++++.++..+ +++||+ |+++.|+|..
T Consensus 63 ~~y~~~~g~-----~~lr~~la~~~~~~~~~~~~-~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~----Vl~~~p~y~~ 132 (396)
T 2q7w_A 63 KNYLGIDGI-----PEFGRCTQELLFGKGSALIN-DKRARTAQTPGGTGALRVAADFLAKNTSVKR----VWVSNPSWPN 132 (396)
T ss_dssp CCCCCTTCC-----HHHHHHHHHHHHCTTCHHHH-TTCEEEEEESHHHHHHHHHHHHHHHHSCCCE----EEEEESCCTH
T ss_pred cCCCCCCCC-----HHHHHHHHHHHhcCCCCccc-cccEEEEecccchhhHHHHHHHHHHhCCCCE----EEEcCCCchh
Confidence 458777777 99999999998533221 22 358998 999999999998766 468988 9999999999
Q ss_pred cHHHHHHhCCeeeeecCC---cccccc-------C---CCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEee
Q 018172 100 YPAETDYLRSGLYKWDGD---ANTFDK-------N---NGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDL 162 (360)
Q Consensus 100 ~~~~~~~~g~~~~~~~~~---~~~~~~-------~---~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ 162 (360)
+...++..|.+++.++.+ ..+++. + ++++++++++||||||.+++. .+.++|+++|+++|+||
T Consensus 133 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De 212 (396)
T 2q7w_A 133 HKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDF 212 (396)
T ss_dssp HHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 999999999999988873 222211 1 247888999999999999883 46678888999999999
Q ss_pred cccCCCCC------cCC---CCCCccEEEeccccccCCCCceEEEEee--cCH----HHHHHHHHHHhhccccCChHHHH
Q 018172 163 AYYWPQYT------PIT---GAADHDIMLFTLSKCTGHAGSRIGWALV--KDT----EVARKMTRFIELGSIGVSKESQL 227 (360)
Q Consensus 163 ay~~~~~~------~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~--~~~----~~~~~l~~~~~~~~~~~~~~~~~ 227 (360)
+|.+..+. ++. ...++++++.|+||.+|++|+|+||+++ +++ ++++.+.........+.+.+.|.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (396)
T 2q7w_A 213 AYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGAS 292 (396)
T ss_dssp SCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred ccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHH
Confidence 99864332 121 2346889999999999999999999986 345 45566655444444456899999
Q ss_pred HHHHHhccc--CCCchhHHHHHHHHHHHHHHHHHHHHHhcC---CcccCCCCCcccccccccCCCCCCcccccCCchHHH
Q 018172 228 RAAKILGIV--SDDYPNFFEYGRRLMSERWNMLRQVIRQSG---VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDC 302 (360)
Q Consensus 228 ~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (360)
++.++++.. .+.++.++++.++.++++++++.+.|++++ ++.+..+.+++ |+|++++. +.+
T Consensus 293 a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-------------~~~~~~~~-~~~ 358 (396)
T 2q7w_A 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGM-------------FSFSGLTK-EQV 358 (396)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSS-------------EEECCCCH-HHH
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCce-------------EEEecCCH-HHH
Confidence 998888731 011236888999999999999999999885 24443344333 67877754 678
Q ss_pred HHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHH
Q 018172 303 EKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQ 348 (360)
Q Consensus 303 ~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~ 348 (360)
.++|+++||.+.|| +|+|++. ++|++++++++|++++
T Consensus 359 ~~~l~~~gv~v~~~---------~Ris~~~~~~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 359 LRLREEFGVYAVAS---------GRVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHCEECCTT---------CEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred HHHHHhcCeeecCC---------ceEEEeecCHHHHHHHHHHHHhcC
Confidence 88888999999873 6999976 9999999999998864
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=270.50 Aligned_cols=292 Identities=12% Similarity=0.132 Sum_probs=222.6
Q ss_pred ccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEE--cCChHHHHHHHH--HhhcCCCCCCCceEEEeCCCCCC
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVI--GTGSTQLYQAAL--YALSSPGGPEPISVVSAAPYYSQ 99 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~--t~G~t~~l~~~~--~~l~~~gd~~~~~vl~~~p~~~~ 99 (360)
..|++..|. +++|++++++++ ..|..+++ ++|++ |+|+++++.+++ ..++++||+ |+++.|+|..
T Consensus 67 ~~y~~~~g~-----~~lr~~ia~~~~~~~~~~~~~-~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~----Vl~~~p~~~~ 136 (412)
T 1yaa_A 67 HEYLGITGL-----PSLTSNAAKIIFGTQSDALQE-DRVISVQSLSGTGALHISAKFFSKFFPDKL----VYLSKPTWAN 136 (412)
T ss_dssp CCCCCTTCC-----HHHHHHHHHHHHCTTCHHHHT-TCEEEEEEEHHHHHHHHHHHHHHHHCTTCC----EEEEESCCTT
T ss_pred cCCCCCCCc-----HHHHHHHHHHHhcCCCCCCCc-ceEEEEeccchHhHHHHHHHHHHHhCCCCE----EEEeCCCCcc
Confidence 458777777 999999999984 34433444 48999 999999999883 445678998 9999999999
Q ss_pred cHHHHHHhCCeeeeecC-Cc--ccccc---------CC-CeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEee
Q 018172 100 YPAETDYLRSGLYKWDG-DA--NTFDK---------NN-GAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDL 162 (360)
Q Consensus 100 ~~~~~~~~g~~~~~~~~-~~--~~~~~---------~~-~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ 162 (360)
+...++..|++++.++. +. .+++. .+ .+.++++++||||||.+++. .+.++|+++|+++|+|+
T Consensus 137 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De 216 (412)
T 1yaa_A 137 HMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDT 216 (412)
T ss_dssp HHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 99999999999998887 32 12221 11 24555669999999999983 45677888999999999
Q ss_pred cccCCCCC-------cCC---CCCC---ccEEEeccccccCCCCceEEEEe--e----cCHH----HHHHHHHHHhhccc
Q 018172 163 AYYWPQYT-------PIT---GAAD---HDIMLFTLSKCTGHAGSRIGWAL--V----KDTE----VARKMTRFIELGSI 219 (360)
Q Consensus 163 ay~~~~~~-------~~~---~~~~---~~i~~~S~sK~~~~~G~r~G~~~--~----~~~~----~~~~l~~~~~~~~~ 219 (360)
+|.+..+. ++. ...+ ++++++|+||.+|++|+|+||++ + .+++ +++.+.........
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 296 (412)
T 1yaa_A 217 AYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVS 296 (412)
T ss_dssp SCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccC
Confidence 99753221 221 1234 78999999999998899999998 6 2455 77887775554555
Q ss_pred cCChHHHHHHHHHhcccC--CCchhHHHHHHHHHHHHHHHHHHHHHhcC---CcccCCCCCcccccccccCCCCCCcccc
Q 018172 220 GVSKESQLRAAKILGIVS--DDYPNFFEYGRRLMSERWNMLRQVIRQSG---VFGLPEYPLEYCNFTGKFTNSHPGFAWL 294 (360)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (360)
+.+.+.|.++.++++... +.++.++++.+++++++++++.+.|++++ ++.+..+.+++ |+|+
T Consensus 297 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-------------~~~~ 363 (412)
T 1yaa_A 297 NPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGM-------------FSFT 363 (412)
T ss_dssp SCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSS-------------EEEC
T ss_pred CCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceE-------------EEee
Confidence 678999999988887320 00235899999999999999999999885 24444444433 6777
Q ss_pred cCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHHh
Q 018172 295 ESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQG 349 (360)
Q Consensus 295 ~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~ 349 (360)
.++. +.+..++.++||.+.| ++|||++. +++++++++++|+++++
T Consensus 364 ~~~~-~~~~~~l~~~gi~v~~---------~~Ris~~~~~~~~i~~~~~~l~~~~~ 409 (412)
T 1yaa_A 364 GLTP-QMVKRLEETHAVYLVA---------SGRASIAGLNQGNVEYVAKAIDEVVR 409 (412)
T ss_dssp CCCH-HHHHHHHHHHCEECCT---------TSEEEGGGCCTTTHHHHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHhCCEEecc---------CcEEEEccCCHhHHHHHHHHHHHHHH
Confidence 6653 5667788889999986 47999976 99999999999999875
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-34 Score=267.99 Aligned_cols=296 Identities=11% Similarity=0.043 Sum_probs=214.2
Q ss_pred cccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh----cCCCCCCCceEEEeCCCCCCcH
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL----SSPGGPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l----~~~gd~~~~~vl~~~p~~~~~~ 101 (360)
.|.+..|+ ++||+++++++-........ ...+.|.|+|.++...+..+ .++||+ |++++|+|++|.
T Consensus 82 ~Y~p~~G~-----p~lr~aia~~~~g~~~~~~~-~~~~qt~ggtga~~~a~~~l~~~~~~pgd~----V~ip~P~w~~y~ 151 (420)
T 4h51_A 82 EYLPISGY-----QPFIDEAVKIIYGNTVELEN-LVAVQTLSGTGAVSLGAKLLTRVFDAETTP----IYLSDPTWPNHY 151 (420)
T ss_dssp CCCCTTCC-----HHHHHHHHHHHHC---CGGG-EEEEEEEHHHHHHHHHHHHHTTTSCTTTSC----EEEEESCCTHHH
T ss_pred CCCCcCCh-----HHHHHHHHHHhcCCCccccc-cceeeecCchHHHHHHHHHHHHhcCCCCCE----EEEecCCchhHH
Confidence 49999998 99999999975322221111 13445888888887766554 578998 999999999999
Q ss_pred HHHHHhCCeeee-ecC-Ccc-------cccc-----CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeec
Q 018172 102 AETDYLRSGLYK-WDG-DAN-------TFDK-----NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 102 ~~~~~~g~~~~~-~~~-~~~-------~~~~-----~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~a 163 (360)
.+++..|.+.+. .+. +.+ ++.. .++++++++++||||||..+++ .+.++++++++++|+|++
T Consensus 152 ~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~ 231 (420)
T 4h51_A 152 GVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSA 231 (420)
T ss_dssp HHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehh
Confidence 999999997543 221 111 1111 3678889999999999999993 456778889999999999
Q ss_pred ccCCCCCc----------CCCCCCccEEEeccccccCCCCceEEEEeecCH------HHHHHHHHHHhhccccCChHHHH
Q 018172 164 YYWPQYTP----------ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDT------EVARKMTRFIELGSIGVSKESQL 227 (360)
Q Consensus 164 y~~~~~~~----------~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~ 227 (360)
|.+..+.. ..+...+++++.||||.|+++|+|+||+++..+ .+...+.........+++...|.
T Consensus 232 Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~ 311 (420)
T 4h51_A 232 YQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGAR 311 (420)
T ss_dssp CTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred hhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHH
Confidence 98643321 113567899999999999999999999987321 23334444555567788889999
Q ss_pred HHHHHhccc--CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHH
Q 018172 228 RAAKILGIV--SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKL 305 (360)
Q Consensus 228 ~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (360)
++...+... ...+..+++.++++++++|+.+.+.|++++.. +.+ +.+....|+|.|+.++. +. .++
T Consensus 312 ~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~------~~~----~~i~~q~GmF~~~gls~-e~-v~~ 379 (420)
T 4h51_A 312 LAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTP------GSW----EHVINQIGMFSFLGLSK-AQ-CEY 379 (420)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------SCC----THHHHCCSSEEECCCCH-HH-HHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CCC----CeecCCCceEEecCcCH-HH-HHH
Confidence 988887721 12245778899999999999999999987421 110 00112344578877754 33 367
Q ss_pred HHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHHhchh
Q 018172 306 LRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 306 l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~~ 352 (360)
|+++||++.|+. |||++. ++++++.+.++|.+++++-.
T Consensus 380 L~e~~Vy~~~~g---------Ris~Agl~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 380 CQNHNIFITVSG---------RANMAGLTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp HHHTTEECCTTC---------EEEGGGCCHHHHHHHHHHHHHHHC---
T ss_pred HHhCCEEEcCCC---------EEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence 889999998742 999987 99999999999999998754
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=263.95 Aligned_cols=289 Identities=16% Similarity=0.130 Sum_probs=220.1
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEE--cCChHHHHHHHHHhhc--CCCCCCCceEEEeCCCCCC
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVI--GTGSTQLYQAALYALS--SPGGPEPISVVSAAPYYSQ 99 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~--t~G~t~~l~~~~~~l~--~~gd~~~~~vl~~~p~~~~ 99 (360)
...|++..|. +++|+++++++...+. ++++|++ |+|++++++.++..+. .+||+ |+++.|+|..
T Consensus 62 ~~~y~~~~g~-----~~lr~~la~~~~~~~~---~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~----vl~~~p~~~~ 129 (394)
T 2ay1_A 62 TKTYAGLSGE-----PEFQKAMGELILGDGL---KSETTATLATVGGTGALRQALELARMANPDLR----VFVSDPTWPN 129 (394)
T ss_dssp CCCCCCSSCC-----HHHHHHHHHHHHGGGC---CGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCC----EEEEESCCHH
T ss_pred cCCCCCCCCc-----HHHHHHHHHHHhCCCC---CcccEEEEecCCchhHHHHHHHHHHhcCCCCE----EEEcCCCChh
Confidence 3468777777 9999999999742222 3468999 9999999999998775 48998 9999999999
Q ss_pred cHHHHHHhCCeeeeecCC---cccccc--------C--CCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEee
Q 018172 100 YPAETDYLRSGLYKWDGD---ANTFDK--------N--NGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDL 162 (360)
Q Consensus 100 ~~~~~~~~g~~~~~~~~~---~~~~~~--------~--~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ 162 (360)
+...++..|.+++.++.+ ..+++. + ++++++++++||||||.+++. .+.++|+++|+++|+||
T Consensus 130 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De 209 (394)
T 2ay1_A 130 HVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDL 209 (394)
T ss_dssp HHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 999999999999988873 222211 1 246778889999999999983 45678888999999999
Q ss_pred cccCCCCC------cC---CCCCCccEEEeccccccCCCCceEEEEee--cCHHHHHH----HHHHHhhccccCChHHHH
Q 018172 163 AYYWPQYT------PI---TGAADHDIMLFTLSKCTGHAGSRIGWALV--KDTEVARK----MTRFIELGSIGVSKESQL 227 (360)
Q Consensus 163 ay~~~~~~------~~---~~~~~~~i~~~S~sK~~~~~G~r~G~~~~--~~~~~~~~----l~~~~~~~~~~~~~~~~~ 227 (360)
+|.+..+. ++ ....+++++++|+||.+|++|+|+||+++ +++++++. +.........+.+.++|.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 289 (394)
T 2ay1_A 210 AYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAK 289 (394)
T ss_dssp CCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHH
T ss_pred CccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHH
Confidence 99864332 11 12345789999999999999999999987 35655444 333333344456889999
Q ss_pred HHHHHhccc--CCCchhHHHHHHHHHHHHHHHHHHHHHhcC---CcccCCCCCcccccccccCCCCCCcccccCCchHHH
Q 018172 228 RAAKILGIV--SDDYPNFFEYGRRLMSERWNMLRQVIRQSG---VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDC 302 (360)
Q Consensus 228 ~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (360)
++.++++.. .+.+..++++.+++++++++++.+.|++++ ++.+..+.+ ++|+|++++. +.+
T Consensus 290 a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-------------g~~~~~~~~~-~~~ 355 (394)
T 2ay1_A 290 IVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHR-------------GMFSRLGATP-EQV 355 (394)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCC-------------SSEEECCCCH-HHH
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCc-------------eEEEeeCCCH-HHH
Confidence 988888732 011236889999999999999999998874 244333333 3478888764 667
Q ss_pred HHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHH
Q 018172 303 EKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAI 347 (360)
Q Consensus 303 ~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~ 347 (360)
.++|+++||.+.|| +|++++. +++++++++++|+++
T Consensus 356 ~~~l~~~gi~v~~~---------~Ris~~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 356 KRIKEEFGIYMVGD---------SRINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHHHHHHCEECCTT---------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred HHHHHhCCEEecCC---------CeEEeecCCHhhHHHHHHHHHHc
Confidence 88888999999874 5999976 899999999999876
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=284.94 Aligned_cols=289 Identities=15% Similarity=0.232 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
.++|+++++++.. .|.++++ ++|++|+|+++++..++..+.++||+ |+++.|+|..+...++..|.+++.++.+
T Consensus 69 ~~l~~~la~~l~~~~g~~~~~-~~v~~~~g~~~a~~~~~~~~~~~gd~----vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 143 (392)
T 3b1d_A 69 DELLQAVLDWEKSEHQYSFDK-EDIVFVEGVVPAISIAIQAFTKEGEA----VLINSPVYPPFARSVRLNNRKLVSNSLK 143 (392)
Confidence 8999999998753 4544444 48999999999999999999999998 9999999999999999999998887763
Q ss_pred -c--------ccccc--C-CCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCC-----CcCCC--
Q 018172 118 -A--------NTFDK--N-NGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQY-----TPITG-- 174 (360)
Q Consensus 118 -~--------~~~~~--~-~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~-----~~~~~-- 174 (360)
. +.+.. + +++++|++++||||||.+++ +.+.++|+++|+++|+||+|.+..+ .++..
T Consensus 144 ~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 223 (392)
T 3b1d_A 144 EENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVS 223 (392)
Confidence 2 22222 2 57889999999999999988 3456788889999999999985322 22221
Q ss_pred C--CCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhcc-ccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 175 A--ADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGS-IGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 175 ~--~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
. .++++++.|+||.++++|+|+||++++++++++.+.......+ .+.+.+.|.++.++++. . ..++++.++.+
T Consensus 224 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~--~~~~~~~~~~~ 299 (392)
T 3b1d_A 224 PDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRY--G--KPWLVALKAVL 299 (392)
Confidence 1 5788999999999999999999999844568898887765543 35688899888887762 2 27889999999
Q ss_pred HHHHHHHHHHHHh-cCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHH-HhhCeeeeCCCCCCC-CCC
Q 018172 252 SERWNMLRQVIRQ-SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLL-RAERIMARGGRRFGA-DAK 324 (360)
Q Consensus 252 ~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l-~~~gI~~~pg~~f~~-~~~ 324 (360)
+++++.+.+.|++ ++++.+..+.+++ ++|++++. ...+.+.| +++||.++||..|+. .++
T Consensus 300 ~~~~~~l~~~l~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~ 366 (392)
T 3b1d_A 300 EENIQFAVEYFAQEAPRLKVMKPQGTY-------------LIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGEL 366 (392)
Confidence 9999999999988 6666665555554 56777753 24455666 588999999998874 467
Q ss_pred eEEEEecCChHHHHHHHHHHHHHHh
Q 018172 325 YARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 325 ~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
++||+++.++|++++++++|.++++
T Consensus 367 ~iRi~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 367 HARLNIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 9999998888999999999998875
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=255.17 Aligned_cols=284 Identities=14% Similarity=0.084 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCC-cEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC--cHHHHHHhCCeeeeec
Q 018172 39 PELAEAINNLHHVVDNAVSDGR-HIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ--YPAETDYLRSGLYKWD 115 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~-~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~--~~~~~~~~g~~~~~~~ 115 (360)
.++++.++++++. +++ +|++|+|+++++..++..++++||+ |++++|+|.. +...++..|++++.++
T Consensus 70 ~~~~~~la~~~g~------~~~~~v~~t~g~t~al~~~~~~~~~~gd~----Vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 139 (393)
T 1vjo_A 70 DEIQSLLRYVWQT------ENPLTIAVSGTGTAAMEATIANAVEPGDV----VLIGVAGYFGNRLVDMAGRYGADVRTIS 139 (393)
T ss_dssp HHHHHHHHHHHTC------CCSCEEEESSCHHHHHHHHHHHHCCTTCE----EEEEESSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHhCC------CCCcEEEEeCchHHHHHHHHHhccCCCCE----EEEEcCChhHHHHHHHHHHcCCceEEEe
Confidence 4445555555554 445 8999999999999999999999998 9999999999 8889999999999998
Q ss_pred CCccc-ccc-------CC-CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecc
Q 018172 116 GDANT-FDK-------NN-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTL 185 (360)
Q Consensus 116 ~~~~~-~~~-------~~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~ 185 (360)
.+.++ ++. ++ ++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+..+......+.++++.|+
T Consensus 140 ~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~ 219 (393)
T 1vjo_A 140 KPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCS 219 (393)
T ss_dssp CCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCS
T ss_pred cCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcC
Confidence 76542 221 24 7899999999999999988 67788888899999999999954433223455779999999
Q ss_pred ccccCCCCceEEEEeecCHHHHHHHHHH----H---------------hhccc-cCChHHHHHHHHHhcccCCCchhHHH
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARKMTRF----I---------------ELGSI-GVSKESQLRAAKILGIVSDDYPNFFE 245 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~l~~~----~---------------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (360)
||.++.++ |+||+++ ++++++.+... . ..... +.+.+.|.++.++++... +.+++
T Consensus 220 sK~l~~~~-~~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~---~~~~~ 294 (393)
T 1vjo_A 220 QKGLGCSP-GASPFTM-SSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIA---QEGLA 294 (393)
T ss_dssp SSTTCSCS-SCEEEEE-CHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHH---HHCHH
T ss_pred cccccCCC-ceEEEEE-CHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHH---HccHH
Confidence 99998777 9999999 78888877432 0 01223 678889998888887432 14578
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhh-CeeeeCCCCCCC
Q 018172 246 YGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAE-RIMARGGRRFGA 321 (360)
Q Consensus 246 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~-gI~~~pg~~f~~ 321 (360)
+.+++++++++++.+.|+++ ++.+..+.+ + ..++++++.++. ...+.+.|.++ ||.++||..|..
T Consensus 295 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~ 363 (393)
T 1vjo_A 295 NCWQRHQKNVEYLWERLEDI-GLSLHVEKE-Y---------RLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELA 363 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCBSSCGG-G---------BCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCcccCCcc-c---------cCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccC
Confidence 89999999999999999988 566555443 1 112356666652 35666777776 999999987753
Q ss_pred CCCeEEEEe-c--CChHHHHHHHHHHHHHHh
Q 018172 322 DAKYARVSM-L--SREEIFNIFLERLSAIQG 349 (360)
Q Consensus 322 ~~~~~R~s~-~--~~~e~~~~~~~~l~~~~~ 349 (360)
++++|+++ + .++|++++++++|+++++
T Consensus 364 -~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 364 -GKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp -TTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred -CCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 67999994 2 367789999999998863
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-32 Score=253.66 Aligned_cols=287 Identities=11% Similarity=0.083 Sum_probs=220.6
Q ss_pred ccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHH
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETD 105 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~ 105 (360)
|....|. .++++++++++.. .| . +++++|+|+++++..++..++++||. |+++.|+|..+...++
T Consensus 80 ~~~~~g~-----~~~~~~l~~~la~~~g----~-~~v~~~~ggt~a~~~~~~~~~~~gd~----V~~~~p~~~~~~~~~~ 145 (398)
T 3a2b_A 80 SRFLNGT-----LDIHVELEEKLSAYVG----K-EAAILFSTGFQSNLGPLSCLMGRNDY----ILLDERDHASIIDGSR 145 (398)
T ss_dssp BTTTTCC-----CHHHHHHHHHHHHHHT----C-SEEEEESSHHHHHHHHHHHSSCTTCE----EEEETTCCHHHHHHHH
T ss_pred cCcccCC-----cHHHHHHHHHHHHHhC----C-CcEEEECCHHHHHHHHHHHHhCCCCE----EEECCccCHHHHHHHH
Confidence 4555555 5555555554322 12 2 48999999999999999999999998 9999999999999999
Q ss_pred HhCCeeeeecC-Ccccccc--CC----CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC----CcCC
Q 018172 106 YLRSGLYKWDG-DANTFDK--NN----GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY----TPIT 173 (360)
Q Consensus 106 ~~g~~~~~~~~-~~~~~~~--~~----~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~----~~~~ 173 (360)
..|.+++.++. |.+.++. +. ++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+.+ .+..
T Consensus 146 ~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 225 (398)
T 3a2b_A 146 LSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTA 225 (398)
T ss_dssp HSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH
T ss_pred HcCCceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchH
Confidence 99999999885 3333332 11 7899999999999999988 6788889989999999999985432 1111
Q ss_pred ---CCCCc-cEEEeccccccCCCCceEEEEeecCHHHHHHHHHH-HhhccccCChHHHHH-HHHHhcccCCCchhHHHHH
Q 018172 174 ---GAADH-DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRF-IELGSIGVSKESQLR-AAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 174 ---~~~~~-~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ 247 (360)
+..++ +++++|+||.++++| ||+++ ++++++.+... ......+.+.+.|.+ +.++++.. .++++.
T Consensus 226 ~~~~~~~~~di~~~s~sK~~~~~G---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~-----~~~~~~ 296 (398)
T 3a2b_A 226 SHFGLNDDVDLIMGTFSKSLASLG---GFVAG-DADVIDFLKHNARSVMFSASMTPASVASTLKALEII-----QNEPEH 296 (398)
T ss_dssp HHHTCGGGCSEEEEESSSTTCSSC---EEEEE-CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH-----HHCTHH
T ss_pred hhcCCCcCCeEEEecccccccCCC---cEEEe-CHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHH-----hhCHHH
Confidence 22234 799999999999778 99998 89999998775 333445566677764 45667632 456788
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCC--C
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGA--D 322 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~--~ 322 (360)
++.++++++++.+.|+++ ++.+..+ .++|+|+.+++. ..+.+.|.++||.+.||..|+. .
T Consensus 297 ~~~~~~~~~~l~~~L~~~-g~~~~~~--------------~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~ 361 (398)
T 3a2b_A 297 IEKLWKNTDYAKAQLLDH-GFDLGAT--------------ESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAE 361 (398)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCBCSC--------------CSSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHhc-CCCcCCC--------------CCCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCCCCCC
Confidence 999999999999999988 4444332 234788888753 5677777788999999988853 3
Q ss_pred CCeEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 323 AKYARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 323 ~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
.+++|++++. ++|++++++++|++++++.
T Consensus 362 ~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 362 ESLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp GCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 5799999986 9999999999999998754
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=249.04 Aligned_cols=287 Identities=13% Similarity=0.103 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC--cHHHHHHhCCeeeeecC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ--YPAETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~--~~~~~~~~g~~~~~~~~ 116 (360)
.++++.++++++. + +++++++|+|+++++..++..++++||+ |++++|+|.. +...++..|++++.++.
T Consensus 56 ~~~~~~la~~~g~---~--~~~~v~~~~g~t~a~~~~~~~l~~~gd~----vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 126 (386)
T 2dr1_A 56 MDTVERLREFLEV---E--KGEVLLVPSSGTGIMEASIRNGVSKGGK----VLVTIIGAFGKRYKEVVESNGRKAVVLEY 126 (386)
T ss_dssp HHHHHHHHHHHTC---S--SSEEEEESSCHHHHHHHHHHHHSCTTCE----EEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHhCC---C--CCcEEEEeCChHHHHHHHHHHhhcCCCe----EEEEcCCchhHHHHHHHHHhCCceEEEec
Confidence 4445555555553 2 1457999999999999999999999998 9999999998 88888999999999887
Q ss_pred Cccc------ccc----CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecc
Q 018172 117 DANT------FDK----NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTL 185 (360)
Q Consensus 117 ~~~~------~~~----~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~ 185 (360)
+.+. +.. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+.........+.+++++|+
T Consensus 127 ~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~ 206 (386)
T 2dr1_A 127 EPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSS 206 (386)
T ss_dssp CTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEET
T ss_pred CCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEec
Confidence 5432 211 357899999999999999988 67888899899999999999865443223445679999999
Q ss_pred ccccCCCCceEEEEeecCHHHHHHHH----------------HH--HhhccccCChHHHHHHHHHhcccCCCchh-HHHH
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARKMT----------------RF--IELGSIGVSKESQLRAAKILGIVSDDYPN-FFEY 246 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~l~----------------~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 246 (360)
||.++.++ ++||+++ ++++++.+. .. ......+.+.+.|.++.++++.+.. . .+++
T Consensus 207 sK~~~~~~-g~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~g~~~~ 281 (386)
T 2dr1_A 207 QKAFGVPP-GLAIGAF-SERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEK---MGGKEK 281 (386)
T ss_dssp TSTTCCCS-SCEEEEE-CHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHH---TTCHHH
T ss_pred cccccCCC-ceEEEEE-CHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH---hcCHHH
Confidence 99998552 4899999 788887762 22 1234567888899888888874321 2 4788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCCCCCCCC
Q 018172 247 GRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGGRRFGADA 323 (360)
Q Consensus 247 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~~f~~~~ 323 (360)
.+++++++++++.+.|+++ ++.+..+.+. ..++++|+.++. ...+.+.|.++||.++||..+. ..
T Consensus 282 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~-~~ 349 (386)
T 2dr1_A 282 WLEMYEKRAKMVREGVREI-GLDILAEPGH----------ESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGSV-KE 349 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCBSSCTTC----------BCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCGGG-TT
T ss_pred HHHHHHHHHHHHHHHHHHc-CCeeCcCccc----------cCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCcccc-CC
Confidence 9999999999999999988 5555444321 134467887763 3667777778899999998664 36
Q ss_pred CeEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 324 KYARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 324 ~~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
+++|+++.. +++++++++++|++++++.
T Consensus 350 ~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 350 KTFRIGHMGYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp TEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 799999984 9999999999999998764
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=256.33 Aligned_cols=286 Identities=13% Similarity=0.072 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc----CCCCCCCceEEEeCCCCCCcHHHH---HHhCCee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS----SPGGPEPISVVSAAPYYSQYPAET---DYLRSGL 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~----~~gd~~~~~vl~~~p~~~~~~~~~---~~~g~~~ 111 (360)
+++|++++++++. ++++|++|+|+++++..++..+. ++||+ |++++|+|+.+...+ +..|+++
T Consensus 47 ~~l~~~la~~~g~------~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~----vl~~~~~~~~~~~~~~~~~~~g~~~ 116 (384)
T 1eg5_A 47 EKAREKVAKVLGV------SPSEIFFTSCATESINWILKTVAETFEKRKRT----IITTPIEHKAVLETMKYLSMKGFKV 116 (384)
T ss_dssp HHHHHHHHHHHTS------CGGGEEEESCHHHHHHHHHHHHHHHTTTTCCE----EEECTTSCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCC------CCCeEEEECCHHHHHHHHHHhhhhhccCCCCE----EEECCCCchHHHHHHHHHHhcCCEE
Confidence 8999999999985 45689999999999999999997 78998 999999999887666 6779999
Q ss_pred eeecCCccc-cc-----c--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcC--cEEEEeecccCCCCCcCCCCCCccE
Q 018172 112 YKWDGDANT-FD-----K--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAE--GKLIHDLAYYWPQYTPITGAADHDI 180 (360)
Q Consensus 112 ~~~~~~~~~-~~-----~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~--~~li~D~ay~~~~~~~~~~~~~~~i 180 (360)
+.++.+.++ ++ . ++++++|++++|+||||.+++ +.+.++|+++| +++|+|++|..+..+......+.++
T Consensus 117 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di 196 (384)
T 1eg5_A 117 KYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDY 196 (384)
T ss_dssp EECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSE
T ss_pred EEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCE
Confidence 998876432 21 1 357999999999999999998 67788888899 9999999998543321123346789
Q ss_pred EEeccccccCCCCceEEEEeecCHHH--HHHHHHH---HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEV--ARKMTRF---IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERW 255 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~--~~~l~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (360)
+++|+||.+|++| +||+++ ++++ .+.+... ......+.+.+.|.++.++++.. .+++++.++++++++
T Consensus 197 ~~~s~sK~~g~~G--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~----~~~~~~~~~~~~~~~ 269 (384)
T 1eg5_A 197 ASFSAHKFHGPKG--VGITYI-RKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA----VEELSEAAKHMEKLR 269 (384)
T ss_dssp EEEEGGGGTSCTT--CEEEEE-CTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH----HHTHHHHHHHHHHHH
T ss_pred EEecHHHhcCCCc--eEEEEE-cCCCccccccccCcccccccCCCCChHHHHHHHHHHHHH----HHhHHHHHHHHHHHH
Confidence 9999999999888 799999 5554 2222110 11234578889998888888742 257889999999999
Q ss_pred HHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--chHHHHHHHHhhCeeeeCCCCCCCC-----------
Q 018172 256 NMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--EDEDCEKLLRAERIMARGGRRFGAD----------- 322 (360)
Q Consensus 256 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gI~~~pg~~f~~~----------- 322 (360)
+++.+.|++. ++.+..+..+. .+.++++.++ +...+.+.|.++||.+++|..|+..
T Consensus 270 ~~l~~~L~~~-g~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~ 338 (384)
T 1eg5_A 270 SKLVSGLMNL-GAHIITPLEIS----------LPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAM 338 (384)
T ss_dssp HHHHHHHHTT-TCEECSCTTSB----------CTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHT
T ss_pred HHHHHHhCCC-CeEEeCCcccC----------CCCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHc
Confidence 9999999884 55554332110 1123444444 2366777888999999999877431
Q ss_pred -------CCeEEEEec--CChHHHHHHHHHHHHHHhchh
Q 018172 323 -------AKYARVSML--SREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 323 -------~~~~R~s~~--~~~e~~~~~~~~l~~~~~~~~ 352 (360)
.+++||+++ .++|++++++++|++++++.+
T Consensus 339 g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 377 (384)
T 1eg5_A 339 GVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLD 377 (384)
T ss_dssp TCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred CCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 368999997 389999999999999997654
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=245.18 Aligned_cols=281 Identities=14% Similarity=0.041 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH--HHHHHhCCeeeeecC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP--AETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~--~~~~~~g~~~~~~~~ 116 (360)
.++|++++++++. +++++++|+|+++++..++..++++||+ |+++.|+|+++. ..++..|++++.++.
T Consensus 37 ~~l~~~la~~~g~------~~~~i~~~~g~t~a~~~~~~~~~~~gd~----vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 106 (352)
T 1iug_A 37 LKARGLLREAFRT------EGEVLILTGSGTLAMEALVKNLFAPGER----VLVPVYGKFSERFYEIALEAGLVVERLDY 106 (352)
T ss_dssp HHHHHHHHHHHTC------SSEEEEEESCHHHHHHHHHHHHCCTTCE----EEEEECSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHhCC------CCceEEEcCchHHHHHHHHHhccCCCCe----EEEEeCCchhHHHHHHHHHcCCceEEEeC
Confidence 8999999999985 4468999999999999999999999998 999999999875 445667999998886
Q ss_pred Ccc------ccccCCCeeEEEEcCCCCCCcccch-HHHHHHhhhc--CcEEEEeecccCCCCCcCCCCCCccEEEecccc
Q 018172 117 DAN------TFDKNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSA--EGKLIHDLAYYWPQYTPITGAADHDIMLFTLSK 187 (360)
Q Consensus 117 ~~~------~~~~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~--~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK 187 (360)
+.+ .+.. +++++|++++|+||||.+++ +.+.++|+++ |+++|+|++|..+..+......+.+++++|+||
T Consensus 107 ~~~~~~d~~~l~~-~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K 185 (352)
T 1iug_A 107 PYGDTPRPEDVAK-EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQK 185 (352)
T ss_dssp CTTCCCCTTTSCC-SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSS
T ss_pred CCCCCCCHHHHhc-cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcc
Confidence 533 3333 57899999999999999998 6788889889 999999999985433211223357899999999
Q ss_pred -ccCCCCceEEEEeecCHHHHHH---------HHH----H-HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHH
Q 018172 188 -CTGHAGSRIGWALVKDTEVARK---------MTR----F-IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMS 252 (360)
Q Consensus 188 -~~~~~G~r~G~~~~~~~~~~~~---------l~~----~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 252 (360)
.++++| +||+++ ++++++. +.. . ......+.+...+.++.++++... .++++.+++++
T Consensus 186 ~~~~~~g--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----~~~~~~~~~~~ 258 (352)
T 1iug_A 186 GLMCPPG--LGFVAL-SPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVL----PRLEEHLALKA 258 (352)
T ss_dssp TTCCCSC--EEEEEE-CHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHG----GGHHHHHHHHH
T ss_pred cccCCCc--eeEEEE-CHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 555445 899998 7776654 221 1 122344667777777777776432 34889999999
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEE
Q 018172 253 ERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGGRRFGADAKYARVS 329 (360)
Q Consensus 253 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s 329 (360)
++++++.+.|+++ ++.+..+. ..++++|+.+++ ...+.+.|.++||.++||.... .++++|++
T Consensus 259 ~~~~~l~~~L~~~-g~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~-~~~~iRi~ 324 (352)
T 1iug_A 259 WQNALLYGVGEEG-GLRPVPKR------------FSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPL-KGKVFRLS 324 (352)
T ss_dssp HHHHHHHHHHHHT-TCEESCSS------------BCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGG-TTTEEEEC
T ss_pred HHHHHHHHHHHHC-CCcccccc------------cCCeEEEEEcCCCCCHHHHHHHHHHCCEEEEeCCCcc-CCCEEEEE
Confidence 9999999999987 55544332 123467887763 3667778888899999987432 36799999
Q ss_pred ecC--ChHHHHHHHHHHHHHHhch
Q 018172 330 MLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 330 ~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
+.. +++++++++++|++++++.
T Consensus 325 ~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 325 LMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHh
Confidence 975 7999999999999998653
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9.6e-31 Score=246.84 Aligned_cols=285 Identities=15% Similarity=0.104 Sum_probs=213.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH----HHHHhCCeeeeec
Q 018172 40 ELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA----ETDYLRSGLYKWD 115 (360)
Q Consensus 40 ~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~----~~~~~g~~~~~~~ 115 (360)
+||++++++++. + ++++++|+++++..++.+++++||+ |+++.|+|..+.. .++..|++++.++
T Consensus 66 ~l~~~ia~~~g~-------~-~~i~~~~g~~ai~~~~~~l~~~gd~----Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 133 (404)
T 1e5e_A 66 NLEGKIAFLEKT-------E-ACVATSSGMGAIAATVLTILKAGDH----LISDECLYGCTHALFEHALTKFGIQVDFIN 133 (404)
T ss_dssp HHHHHHHHHHTC-------S-EEEEESSHHHHHHHHHHHHCCTTCE----EEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhCC-------C-cEEEeCChHHHHHHHHHHHhCCCCE----EEEeCCCchhHHHHHHHHHHHcCCEEEEEC
Confidence 899999999984 3 6777888889999999999999998 9999999999988 7888899999998
Q ss_pred CC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhh-cCcEEEEeecccCCCCC-cCCCCCCccEEEecccccc
Q 018172 116 GD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRS-AEGKLIHDLAYYWPQYT-PITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 116 ~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~-~~~~li~D~ay~~~~~~-~~~~~~~~~i~~~S~sK~~ 189 (360)
.+ .+.+.. ++++++|++++||||||.+++ +.+.++|++ +|+++|+|++|.++.+. ++ ..++++++.|+||.+
T Consensus 134 ~~d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~--~~~~di~~~S~sK~~ 211 (404)
T 1e5e_A 134 TAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV--DFGVDVVVHSATKYI 211 (404)
T ss_dssp TTSTTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG--GGTCSEEEEETTTTT
T ss_pred CCCHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcc--ccCCEEEEEcCcccc
Confidence 74 444433 468999999999999999998 778899999 99999999999975432 22 357899999999999
Q ss_pred CCCCceE-EEEeecCHHHHH-HHHHHHhhc-cccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 190 GHAGSRI-GWALVKDTEVAR-KMTRFIELG-SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 190 ~~~G~r~-G~~~~~~~~~~~-~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
+.+|+|+ ||+++ ++++++ .+....... +.+.+++.|.++.+.++. +....+...++.+.+.+.+++.+
T Consensus 212 ~~~g~ri~G~~~~-~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~l~~~l~~~~ 282 (404)
T 1e5e_A 212 NGHTDVVAGLICG-KADLLQQIRMVGIKDITGSVISPHDAWLITRGLST--------LNIRMKAESENAMKVAEYLKSHP 282 (404)
T ss_dssp TCSSCCCCEEEEE-CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCCeEEEEEE-CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhH--------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999998 99999 788877 787766544 556888888888887762 23334445566667777777664
Q ss_pred CcccCCCCC--c--ccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCC---------------------
Q 018172 267 VFGLPEYPL--E--YCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFG--------------------- 320 (360)
Q Consensus 267 ~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~--------------------- 320 (360)
.+.....++ . .+.+......+.++|+.+++++. +++.+.+.+.|| +.+|..||
T Consensus 283 ~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~ 361 (404)
T 1e5e_A 283 AVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEE 361 (404)
T ss_dssp TEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHH
T ss_pred CeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHH
Confidence 221110100 0 00000000123456666688765 667888889999 66665554
Q ss_pred -----CCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 321 -----ADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 321 -----~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
..++++|||++. |++++++++|++++..
T Consensus 362 ~~~~g~~~~~iRis~g~--e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 362 REAAGITDGMIRLSVGI--EDADELIADFKQGLDA 394 (404)
T ss_dssp HHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHHH
Confidence 126799999977 7788888888888765
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-31 Score=250.27 Aligned_cols=291 Identities=18% Similarity=0.173 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh----cCCCCCCCceEEEeCCCCCC----cHHHHHHhCCe
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL----SSPGGPEPISVVSAAPYYSQ----YPAETDYLRSG 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l----~~~gd~~~~~vl~~~p~~~~----~~~~~~~~g~~ 110 (360)
+++|++++++++.. ++++|++|+|+++++..++..+ +++||+ |+++.|+|.. +...++..|++
T Consensus 75 ~~l~~~la~~~~~~-----~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~----Vl~~~~~~~~~~~~~~~~~~~~g~~ 145 (420)
T 1t3i_A 75 EAVRNKVAKFINAR-----SPREIVYTRNATEAINLVAYSWGMNNLKAGDE----IITTVMEHHSNLVPWQMVAAKTGAV 145 (420)
T ss_dssp HHHHHHHHHHTTCS-----CGGGEEEESSHHHHHHHHHHHTHHHHCCTTCE----EEEETTCCGGGTHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHcCCC-----CCCeEEEcCChHHHHHHHHHHhhhcccCCCCE----EEECcchhHHHHHHHHHHHHhcCcE
Confidence 89999999998842 2468999999999999999999 899998 9999999999 45667788999
Q ss_pred eeeecCCccc-ccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEE
Q 018172 111 LYKWDGDANT-FDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181 (360)
Q Consensus 111 ~~~~~~~~~~-~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~ 181 (360)
++.++.+.+. ++. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+.........+.+++
T Consensus 146 ~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~ 225 (420)
T 1t3i_A 146 LKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWL 225 (420)
T ss_dssp EEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEE
T ss_pred EEEeccCCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEE
Confidence 9998876332 211 457899999999999999998 6778889999999999999986543311123357899
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc--------------------cccCChHHHHHHHH-HhcccCCCc
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG--------------------SIGVSKESQLRAAK-ILGIVSDDY 240 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~--------------------~~~~~~~~~~~~~~-~l~~~~~~~ 240 (360)
++|+||.+|++| +||+++ ++++++.+......+ ..+.+.+.|.++.. +++.+..
T Consensus 226 ~~s~sK~~~~~g--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~-- 300 (420)
T 1t3i_A 226 VASGHKMCAPTG--IGFLYG-KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTD-- 300 (420)
T ss_dssp EEEGGGTTSCTT--CEEEEE-CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHH--
T ss_pred EEehhhhcCCCc--eEEEEE-chHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHH--
Confidence 999999999777 899998 788888876543211 13456666666554 4553321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~ 318 (360)
..+++.+++++++++++.+.|++++++.+..+.... ...++++++.+++ ...+.+.|.++||.++||..
T Consensus 301 -~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~ 371 (420)
T 1t3i_A 301 -LGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKH--------GDRAALASFNVAGLHASDVATMVDQDGIAIRSGHH 371 (420)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGG--------SCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCT
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccc--------cccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccc
Confidence 357888999999999999999998666654443100 0012344555543 36677889999999999864
Q ss_pred C--------CCCCCeEEEEecC--ChHHHHHHHHHHHHHHhchhc
Q 018172 319 F--------GADAKYARVSMLS--REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 319 f--------~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~~ 353 (360)
| +. ++++|+++.. +++++++++++|++++++.++
T Consensus 372 ~~~~~~~~~g~-~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 372 CTQPLHRLFDA-SGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp TCHHHHHHTTC-CCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred cchHHHHhcCC-CCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4 32 6799999976 899999999999999876544
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-30 Score=243.51 Aligned_cols=286 Identities=9% Similarity=0.019 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCC--CcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC--cHHHHHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDG--RHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ--YPAETDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~--~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~--~~~~~~~~g~~~~~~ 114 (360)
.++|+.++++++. +. ++|++|+|+++++. ++..++++||+ |++++|+|.. +...++..|++++.+
T Consensus 38 ~~~~~~la~~~~~------~~~~~~v~~~~g~t~al~-~~~~~~~~gd~----vi~~~~~~~~~~~~~~~~~~g~~~~~v 106 (384)
T 3zrp_A 38 AYSLKGLRYVMGA------SKNYQPLIIPGGGTSAME-SVTSLLKPNDK----ILVVSNGVFGDRWEQIFKRYPVNVKVL 106 (384)
T ss_dssp HHHHHHHHHHHTC------CTTSEEEEEESCHHHHHH-HGGGGCCTTCE----EEEECSSHHHHHHHHHHTTSSCEEEEE
T ss_pred HHHHHHHHHHhCC------CCCCcEEEEcCCcHHHHH-HHHhhcCCCCE----EEEecCCcchHHHHHHHHHcCCcEEEe
Confidence 8899999999986 44 68999999999999 99999999998 9999999965 556677889999999
Q ss_pred cCCccc-ccc-------CC-CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEec
Q 018172 115 DGDANT-FDK-------NN-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFT 184 (360)
Q Consensus 115 ~~~~~~-~~~-------~~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S 184 (360)
+.+.++ ++. ++ ++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+.........+.+++++|
T Consensus 107 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s 186 (384)
T 3zrp_A 107 RPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTA 186 (384)
T ss_dssp CCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEE
T ss_pred cCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEec
Confidence 876543 221 23 7999999999999999998 6788899999999999999986554433345578999999
Q ss_pred cccccCCCCceEEEEeecCHHHHHHH-------------HHHHhh---------cc-ccCChHHHHHHHHHhcccCCCch
Q 018172 185 LSKCTGHAGSRIGWALVKDTEVARKM-------------TRFIEL---------GS-IGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 185 ~sK~~~~~G~r~G~~~~~~~~~~~~l-------------~~~~~~---------~~-~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
+||.++ .+.++||+++ ++++++.+ ...... .. .+.+...+.++.++++.+..
T Consensus 187 ~~K~~~-~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~--- 261 (384)
T 3zrp_A 187 SQKALG-SAAGLGLLLL-SPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEK--- 261 (384)
T ss_dssp TTSTTC-CCSSEEEEEE-CHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHH---
T ss_pred Cccccc-CCCceEEEEE-CHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHh---
Confidence 999885 2344999998 78887777 222211 11 25566666666666664321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCCC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRRF 319 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~f 319 (360)
..+++.+++++++++++.+.|+++ ++.+..+.+.. ..++++|+.+++ ...+.+.|.++||.+++|..+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~ 331 (384)
T 3zrp_A 262 EGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPES---------YSNTVTGVILKVADPQKVLAGTVNEGVEFAPGVHP 331 (384)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGG---------BCSSEEEEECSSSCHHHHHHHHHTTTCCCEECCCT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccc---------cCccEEEEECCCCCHHHHHHHHHHCCEEEecCCCC
Confidence 447899999999999999999998 55554443111 123356777764 377788888889999998744
Q ss_pred CCCCCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 320 GADAKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 320 ~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
.. +++|+++.. ++|++++++++|++++++.+
T Consensus 332 ~~--~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 332 AF--KYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp TC--CEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred Cc--CEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 32 799999864 89999999999999998754
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=250.84 Aligned_cols=286 Identities=14% Similarity=0.079 Sum_probs=216.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh----cCCCCCCCceEEEeCCCCCCcH----HHHHHhCC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL----SSPGGPEPISVVSAAPYYSQYP----AETDYLRS 109 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l----~~~gd~~~~~vl~~~p~~~~~~----~~~~~~g~ 109 (360)
.+++|++++++++.. ++++|++|+|+++++..++..+ +++||+ |+++.|+|.+.. ..++..|+
T Consensus 69 ~~~l~~~la~~~~~~-----~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~----vl~~~~~~~~~~~~~~~~~~~~g~ 139 (406)
T 1kmj_A 69 MENVRKRASLFINAR-----SAEELVFVRGTTEGINLVANSWGNSNVRAGDN----IIISQMEHHANIVPWQMLCARVGA 139 (406)
T ss_dssp HHHHHHHHHHHTTCS-----CGGGEEEESSHHHHHHHHHHHTHHHHCCTTCE----EEEETTCCGGGTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCC-----CCCeEEEeCChhHHHHHHHHHhhhhcCCCCCE----EEEecccchHHHHHHHHHHHhCCC
Confidence 389999999998742 2468999999999999999999 889998 999999988654 34677899
Q ss_pred eeeeecCCcc------cccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccE
Q 018172 110 GLYKWDGDAN------TFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDI 180 (360)
Q Consensus 110 ~~~~~~~~~~------~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i 180 (360)
+++.++.+.+ .++. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+..+......+.++
T Consensus 140 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~ 219 (406)
T 1kmj_A 140 ELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDF 219 (406)
T ss_dssp EEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSE
T ss_pred EEEEEecCCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCE
Confidence 9998887533 2221 467999999999999999999 677888999999999999998754321112336789
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh---------------------ccccCChHHHHHHH-HHhcccCC
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL---------------------GSIGVSKESQLRAA-KILGIVSD 238 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~---------------------~~~~~~~~~~~~~~-~~l~~~~~ 238 (360)
++.|+||.+|++| +||+++ ++++++.+...... ...+.+.+.+.++. ++++.+..
T Consensus 220 ~~~s~~K~~g~~G--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 296 (406)
T 1kmj_A 220 YVFSGHKLYGPTG--IGILYV-KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSA 296 (406)
T ss_dssp EEEEGGGTTSCTT--CEEEEE-CHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEchhccCCCC--cEEEEE-eHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999888 899999 78888887543311 11335566666555 45553321
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCC
Q 018172 239 DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGG 316 (360)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg 316 (360)
.++++.+++++++++++.+.|++++++.+..+. ..++++++.+++ ...+.+.|.++||.++||
T Consensus 297 ---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g 361 (406)
T 1kmj_A 297 ---LGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ------------NRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTG 361 (406)
T ss_dssp ---HCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT------------TCCSEEEEEETTCCHHHHHHHHHHTTEECEEE
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC------------CcCCEEEEEECCCCHHHHHHHHhhCCcEEEec
Confidence 357788999999999999999988666654441 012234444442 366778889999999998
Q ss_pred CCCCC-------CCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 317 RRFGA-------DAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 317 ~~f~~-------~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
..|.. .++++|+++.. ++|++++++++|+++++.
T Consensus 362 ~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 362 HHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp CTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 75321 25799999976 899999999999998764
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-30 Score=243.64 Aligned_cols=285 Identities=14% Similarity=0.069 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc--HHHHHHhCCeeeeecC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY--PAETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~--~~~~~~~g~~~~~~~~ 116 (360)
+++|+.++++++. ++++|++|+|+++++..++..++++||+ |+++.|+|.++ ...++..|++++.++.
T Consensus 45 ~~l~~~la~~~g~------~~~~v~~t~g~t~a~~~~~~~~~~~gd~----Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 114 (392)
T 2z9v_A 45 EKVVDKAQKAMRL------SNKPVILHGEPVLGLEAAAASLISPDDV----VLNLASGVYGKGFGYWAKRYSPHLLEIEV 114 (392)
T ss_dssp HHHHHHHHHHTTC------SSCCEEESSCTHHHHHHHHHHHCCTTCC----EEEEESSHHHHHHHHHHHHHCSCEEEEEC
T ss_pred HHHHHHHHHHhCC------CCCEEEEeCCchHHHHHHHHHhcCCCCE----EEEecCCcccHHHHHHHHHcCCceEEeeC
Confidence 8999999999985 4468999999999999999999999998 99999999875 3445667999998887
Q ss_pred Cccc-ccc---------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecc
Q 018172 117 DANT-FDK---------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTL 185 (360)
Q Consensus 117 ~~~~-~~~---------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~ 185 (360)
+.++ ++. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+..+......+.+++++|+
T Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~ 194 (392)
T 2z9v_A 115 PYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGP 194 (392)
T ss_dssp CTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECS
T ss_pred CCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecC
Confidence 6433 211 357899999999999999988 67888899999999999999864432112234578999999
Q ss_pred ccc-cCCCCceEEEEeecCHHHHHHHHHHH--------------------hhccccCChHHHHHHHHHhcccCCCchhH-
Q 018172 186 SKC-TGHAGSRIGWALVKDTEVARKMTRFI--------------------ELGSIGVSKESQLRAAKILGIVSDDYPNF- 243 (360)
Q Consensus 186 sK~-~~~~G~r~G~~~~~~~~~~~~l~~~~--------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 243 (360)
||. ++++| +||+++ ++++++.+.... .....+.+...+.++.++++.+. .+
T Consensus 195 sK~~~~~~g--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----~~g 267 (392)
T 2z9v_A 195 NKCLGAPPG--LTMMGV-SERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYL----NEG 267 (392)
T ss_dssp SSTTCCCSC--CEEEEE-CHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHH----HHC
T ss_pred cccccCCCc--eeEEEE-CHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHH----hcc
Confidence 995 45566 599998 788888876421 11223455666666666666332 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhh-CeeeeCCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAE-RIMARGGRRF 319 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~-gI~~~pg~~f 319 (360)
+++.+++++++++++.+.|+++ ++.+..|.... ..++++++.+++ ...+.+.|.++ ||.+++|..+
T Consensus 268 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~ 337 (392)
T 2z9v_A 268 PEAVWARHALTAKAMRAGVTAM-GLSVWAASDSI---------ASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGE 337 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGG---------BCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccc---------cCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCC
Confidence 7788999999999999999987 55554422111 123366777752 36677777776 9999998865
Q ss_pred CCCCCeEEEEe-c--CChHHHHHHHHHHHHHHhch
Q 018172 320 GADAKYARVSM-L--SREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 320 ~~~~~~~R~s~-~--~~~e~~~~~~~~l~~~~~~~ 351 (360)
. .++++|+++ + .+++++++++++|++++++.
T Consensus 338 ~-~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 338 T-LGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp G-TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred C-CCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 4 367999995 5 49999999999999998754
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=246.15 Aligned_cols=289 Identities=11% Similarity=0.033 Sum_probs=218.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCC-cEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH--HHHHHhCCeeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGR-HIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP--AETDYLRSGLYKW 114 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~-~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~--~~~~~~g~~~~~~ 114 (360)
..++|++++++++. +++ +|++|+|+++++..++..++++||+ |++++|+|..+. ..++..|++++.+
T Consensus 53 ~~~l~~~la~~~~~------~~~~~v~~~~g~t~al~~~~~~~~~~gd~----vl~~~~~~~~~~~~~~~~~~g~~~~~v 122 (396)
T 2ch1_A 53 MDEVKDGLRYIFQT------ENRATMCVSGSAHAGMEAMLSNLLEEGDR----VLIAVNGIWAERAVEMSERYGADVRTI 122 (396)
T ss_dssp HHHHHHHHHHHHTC------CCSCEEEESSCHHHHHHHHHHHHCCTTCE----EEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhCC------CCCcEEEECCcHHHHHHHHHHHhcCCCCe----EEEEcCCcccHHHHHHHHHcCCceEEe
Confidence 48999999999986 455 7999999999999999999999998 999999999984 4778889999999
Q ss_pred cCCccc-ccc-------CC-CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEec
Q 018172 115 DGDANT-FDK-------NN-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFT 184 (360)
Q Consensus 115 ~~~~~~-~~~-------~~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S 184 (360)
+.+.+. ++. ++ ++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+..+......+.++++.|
T Consensus 123 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s 202 (396)
T 2ch1_A 123 EGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTG 202 (396)
T ss_dssp ECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECC
T ss_pred cCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEc
Confidence 876432 221 23 6899999999999999998 6777888889999999999985433222234456788899
Q ss_pred cccccCCCCceEEEEeecCHHHHHHHHHHH-----------------------hhccccCChHHHHHHHHHhcccCCCch
Q 018172 185 LSKCTGHAGSRIGWALVKDTEVARKMTRFI-----------------------ELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 185 ~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
++|.++ .+.++|++++ ++++++.+.... .....+.+...|.++.++++.+. +
T Consensus 203 ~~K~~~-~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~---~ 277 (396)
T 2ch1_A 203 AQKVLG-APPGITPISI-SPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIA---E 277 (396)
T ss_dssp CC-CCC-CCSSCEEEEE-CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHH---H
T ss_pred CCcccc-CCCCeEEEEE-CHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHH---H
Confidence 999765 3344699998 778887775320 11224567788888888777432 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHh-hCeeeeCCC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRA-ERIMARGGR 317 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~-~gI~~~pg~ 317 (360)
.++++.+++++++++++.+.|+++ ++.+..+.+.. ..+.++++.++. ...+.+.|.+ +||.+++|.
T Consensus 278 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~ 347 (396)
T 2ch1_A 278 EGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRH---------RLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGL 347 (396)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGG---------BCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccc---------cCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCc
Confidence 568889999999999999999988 55555444321 122356777652 3556666655 599999987
Q ss_pred CCCCCCCeEEEEe-cC--ChHHHHHHHHHHHHHHhchh
Q 018172 318 RFGADAKYARVSM-LS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 318 ~f~~~~~~~R~s~-~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
.+. .++++|+++ .. ++|++++++++|++++++.+
T Consensus 348 ~~~-~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 348 GPT-FGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp GGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred ccc-CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 554 367999998 32 89999999999999997654
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-31 Score=247.58 Aligned_cols=280 Identities=15% Similarity=0.086 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYK 113 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~ 113 (360)
+++|++++++++. ++++|++|+|+++++..++..+ +++||+ |+++.|+|..+... ++..|++++.
T Consensus 62 ~~l~~~la~~~g~------~~~~v~~~~g~t~a~~~~~~~~~~~~gd~----vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 131 (390)
T 1elu_A 62 AQLRQALAETFNV------DPNTITITDNVTTGCDIVLWGLDWHQGDE----ILLTDCEHPGIIAIVQAIAARFGITYRF 131 (390)
T ss_dssp HHHHHHHHHHTTS------CGGGEEEESSHHHHHHHHHHHSCCCTTCE----EEEETTCCHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHcCC------CHHHEEEeCChHHHHHHHHhCCCCCCCCE----EEEecCcccHHHHHHHHHHHHhCcEEEE
Confidence 8999999999875 4568999999999999999999 899998 99999999997654 5667999999
Q ss_pred ecCCc--------ccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhh----hcCcEEEEeecccCCCCCcCCCCCCc
Q 018172 114 WDGDA--------NTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNR----SAEGKLIHDLAYYWPQYTPITGAADH 178 (360)
Q Consensus 114 ~~~~~--------~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~----~~~~~li~D~ay~~~~~~~~~~~~~~ 178 (360)
++.+. +.++. ++++++|++++|+||||.+++ +.+.++|+ ++|+++|+|++|..+..+......+.
T Consensus 132 v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~ 211 (390)
T 1elu_A 132 FPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEV 211 (390)
T ss_dssp ECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCC
T ss_pred EcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCC
Confidence 88752 11211 357999999999999999998 67788888 89999999999986543322234567
Q ss_pred cEEEeccccccCCCCceEEEEeecCHHHHHHHHHH----------------------HhhccccCChHHHHHHHHHhccc
Q 018172 179 DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRF----------------------IELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 179 ~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~----------------------~~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
++++.|+||.+. .|.++||+++ ++++++.+... ......+.+...+.++.++++.+
T Consensus 212 d~~~~s~~K~~~-~~~g~G~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l 289 (390)
T 1elu_A 212 DYYAFTGHKWFA-GPAGVGGLYI-HGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLH 289 (390)
T ss_dssp SEEEEESSSTTC-CCTTCEEEEE-CTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred CEEEcccccccc-CCCceEEEEE-CHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHH
Confidence 899999999332 4566999999 67777766432 12223456677777776767644
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC---chHHHHHHHHhhCeee
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK---EDEDCEKLLRAERIMA 313 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gI~~ 313 (360)
.+. .++++.+++++++++++.+.|++++++.+..|. .+.++|++++++ +...+.+.|.++||.+
T Consensus 290 ~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v 356 (390)
T 1elu_A 290 QRQ--GTAEERYQAICQRSEFLWRGLNQLPHVHCLATS-----------APQAGLVSFTVDSPLGHRAIVQKLEEQRIYL 356 (390)
T ss_dssp HHH--CCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSS-----------CCSSSEEEEEECSSSCHHHHHHHHHHTTEEC
T ss_pred HHc--CCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCc-----------cccccEEEEEcCCCCCHHHHHHHHHHCCEEE
Confidence 321 358889999999999999999998666554331 123345555664 2366777778999999
Q ss_pred eCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHH
Q 018172 314 RGGRRFGADAKYARVSML--SREEIFNIFLERLSAI 347 (360)
Q Consensus 314 ~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~ 347 (360)
++|. .++++|+++. .+++++++++++|+++
T Consensus 357 ~~~~----~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 357 RTIA----DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp EEET----TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred EecC----CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 9976 3579999985 4999999999998754
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=243.43 Aligned_cols=289 Identities=9% Similarity=0.020 Sum_probs=215.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCC-CcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH--HHHHHhCCeeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDG-RHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP--AETDYLRSGLYKW 114 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~-~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~--~~~~~~g~~~~~~ 114 (360)
..++|+.++++++. +. ++|++|+|+++++..++..++++||+ |+++.|+|..+. ..++..|++++.+
T Consensus 54 ~~~l~~~la~~~g~------~~~~~i~~~~g~t~a~~~~~~~~~~~gd~----vl~~~~~~~~~~~~~~~~~~g~~~~~v 123 (393)
T 2huf_A 54 MDDIKEGVRYLFQT------NNIATFCLSASGHGGMEATLCNLLEDGDV----ILIGHTGHWGDRSADMATRYGADVRVV 123 (393)
T ss_dssp HHHHHHHHHHHHTC------CCSEEEEESSCHHHHHHHHHHHHCCTTCE----EEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhCC------CCCcEEEEcCcHHHHHHHHHHHHhCCCCE----EEEECCCcchHHHHHHHHHcCCeeEEE
Confidence 38999999999985 33 37999999999999999999999998 999999998743 3456679999998
Q ss_pred cCCccc-ccc-------CC-CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEec
Q 018172 115 DGDANT-FDK-------NN-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFT 184 (360)
Q Consensus 115 ~~~~~~-~~~-------~~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S 184 (360)
+.+.++ ++. ++ ++++|++++|+||||.+++ +.+.++|+++|+++|+|+++..+..+......+.++++.|
T Consensus 124 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s 203 (393)
T 2huf_A 124 KSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTG 203 (393)
T ss_dssp ECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECC
T ss_pred eCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEEC
Confidence 866432 211 23 7899999999999999988 6777888889999999999886443222234568899999
Q ss_pred cccc-cCCCCceEEEEeecCHHHHHHHHHHH----h-------------------hccccCChHHHHHHHHHhcccCCCc
Q 018172 185 LSKC-TGHAGSRIGWALVKDTEVARKMTRFI----E-------------------LGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 185 ~sK~-~~~~G~r~G~~~~~~~~~~~~l~~~~----~-------------------~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
+||. +|++|+ ||+++ ++++++.+.... . ....+.+...+.++.++++.+..
T Consensus 204 ~sK~l~g~~G~--G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~-- 278 (393)
T 2huf_A 204 SQKVLGAPPGI--TPVSF-SHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACE-- 278 (393)
T ss_dssp SSSTTCCCSSC--EEEEE-CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHH--
T ss_pred CCcccccCCCe--EEEEE-CHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHH--
Confidence 9996 567886 99999 799988887541 0 01124556666666666663321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHh-hCeeeeCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRA-ERIMARGG 316 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~-~gI~~~pg 316 (360)
..+++.+++++++++++.+.|+++ ++.+..+.+. ..+.++++.++. ...+.+.|.+ +||.+++|
T Consensus 279 -~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g 346 (393)
T 2huf_A 279 -EGLPALIARHEDCAKRLYRGLQDA-GFELYADPKD----------RLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGG 346 (393)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGG----------BCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCC
T ss_pred -hCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCccc----------cCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecC
Confidence 347888999999999999999988 5555443221 012256676652 3556666654 59999999
Q ss_pred CCCCCCCCeEEEEe-c--CChHHHHHHHHHHHHHHhchhcc
Q 018172 317 RRFGADAKYARVSM-L--SREEIFNIFLERLSAIQGGSISN 354 (360)
Q Consensus 317 ~~f~~~~~~~R~s~-~--~~~e~~~~~~~~l~~~~~~~~~~ 354 (360)
..|. .++++|+++ . .++|++++++++|++++++.+..
T Consensus 347 ~~~~-~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 386 (393)
T 2huf_A 347 LGPT-AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKPD 386 (393)
T ss_dssp CGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC-
T ss_pred cccc-cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 8764 367999999 5 36889999999999999876543
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=245.39 Aligned_cols=279 Identities=14% Similarity=0.103 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC-C
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG-D 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~-~ 117 (360)
+++|+.++++++. +++|++++| ++++..++..++++||. |+++.|+|..+...++..|.+++.++. |
T Consensus 91 ~~l~~~la~~~~~-------~~~i~~~sG-t~a~~~~l~~~~~~gd~----v~~~~~~~~~~~~~~~~~g~~~~~~~~~d 158 (399)
T 3tqx_A 91 KELEKDISEFLGT-------DDTILYSSC-FDANGGLFETLLGPEDA----IISDELNHASIIDGIRLCKAQRYRYKNNA 158 (399)
T ss_dssp HHHHHHHHHHHTC-------SEEEEESCH-HHHHHTTHHHHCCTTCE----EEEETTCCHHHHHHHHSCCSEEEEECTTC
T ss_pred HHHHHHHHHHHCC-------CcEEEECch-HHHHHHHHHHhcCCCCE----EEECCcccHHHHHHHHHcCCceeEeCCCC
Confidence 8999999999984 346666665 78999999999999998 999999999999999999999999874 3
Q ss_pred cccccc--C------CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC----cCC---C-CCCccE
Q 018172 118 ANTFDK--N------NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT----PIT---G-AADHDI 180 (360)
Q Consensus 118 ~~~~~~--~------~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~----~~~---~-~~~~~i 180 (360)
.+.++. + .++++|++++|+||||.+++ +.+.++|+++|+++|+|++|+.+... +.. + ..+.++
T Consensus 159 ~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di 238 (399)
T 3tqx_A 159 MGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDI 238 (399)
T ss_dssp TTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSE
T ss_pred HHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcE
Confidence 444432 1 17899999999999999999 67888899999999999999632111 111 1 246789
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh--ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL--GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
+++|+||.++ |.+.||+++ ++++++.+...... .+.+.+.+.+.++.++++... .++++.+++++++++++
T Consensus 239 ~~~s~sK~~~--g~~gG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~l 311 (399)
T 3tqx_A 239 LTGTLGKALG--GASGGYTSG-HKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK----TEGPQLRKQLQENSRYF 311 (399)
T ss_dssp EEEESSSSSC--SSCCEEEEE-CHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH----HTHHHHHHHHHHHHHHH
T ss_pred EEecchHhcc--cCceEEEEc-CHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHH
Confidence 9999999998 334499998 89999998775322 234667777777777776321 55789999999999999
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEec--
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGA--DAKYARVSML-- 331 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~-- 331 (360)
.+.|+++ ++.+.. +.++|+|+.+++. ..+.+.|.++||.+.|+..+.. ..+++|++++
T Consensus 312 ~~~L~~~-g~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~ 376 (399)
T 3tqx_A 312 RAGMEKL-GFQLVP--------------GNHPIIPVMLGDAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAV 376 (399)
T ss_dssp HHHHHHH-TCCBCC--------------CSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTT
T ss_pred HHHHHHc-CCCcCC--------------CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecC
Confidence 9999988 344332 3334678877653 6677777889999998765432 3569999996
Q ss_pred CChHHHHHHHHHHHHHHhch
Q 018172 332 SREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 332 ~~~e~~~~~~~~l~~~~~~~ 351 (360)
.++|++++++++|++++++.
T Consensus 377 ~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 377 HTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp CCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 39999999999999998753
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=240.71 Aligned_cols=275 Identities=16% Similarity=0.144 Sum_probs=213.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC-C
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG-D 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~-~ 117 (360)
.++|++++++++. + +.+++++| ++++..++..+.++||. |+++.|+|..+...++..|.+++.++. |
T Consensus 87 ~~l~~~la~~~g~------~-~~i~~~sG-t~a~~~~~~~~~~~gd~----v~~~~~~~~~~~~~~~~~g~~~~~~~~~d 154 (384)
T 1bs0_A 87 QALEEELAEWLGY------S-RALLFISG-FAANQAVIAAMMAKEDR----IAADRLSHASLLEAASLSPSQLRRFAHND 154 (384)
T ss_dssp HHHHHHHHHHHTC------S-EEEEESCH-HHHHHHHHHHHCCTTCE----EEEETTCCHHHHHHHHTSSSEEEEECTTC
T ss_pred HHHHHHHHHHhCC------C-cEEEeCCc-HHHHHHHHHHhCCCCcE----EEEcccccHHHHHHHHHcCCCEEEeCCCC
Confidence 9999999999974 3 45666666 89999999999999998 999999999999999999999998874 3
Q ss_pred cccccc----C-CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC----cCCC--CCCccEEEecc
Q 018172 118 ANTFDK----N-NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT----PITG--AADHDIMLFTL 185 (360)
Q Consensus 118 ~~~~~~----~-~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~----~~~~--~~~~~i~~~S~ 185 (360)
.+.++. . ++++++++++||||||.+++ +.+.++|+++|+++|+|++|..+.+. .... ..+.+++++|+
T Consensus 155 ~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~ 234 (384)
T 1bs0_A 155 VTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTF 234 (384)
T ss_dssp HHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEES
T ss_pred HHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeec
Confidence 333322 1 24789999999999999998 67788899999999999999754321 1111 13456999999
Q ss_pred ccccCCCCceEEEEeecCHHHHHHHHHHHh--hccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARKMTRFIE--LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIR 263 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 263 (360)
||.++++| ||+++ ++++++.+..... ..+.+.+.+.+.++.++++.+.. .+.++.+++++++++++.+.|+
T Consensus 235 sK~~~~~G---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~~~~l~~~L~ 307 (384)
T 1bs0_A 235 GKGFGVSG---AAVLC-SSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRS---DEGDARREKLAALITRFRAGVQ 307 (384)
T ss_dssp SSTTSSCC---EEEEE-CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhccC---cEEEe-CHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHH
Confidence 99999777 99999 8999998876532 12336788888888877774321 2677899999999999999999
Q ss_pred hcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEecC--ChHH
Q 018172 264 QSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGA--DAKYARVSMLS--REEI 336 (360)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~~--~~e~ 336 (360)
+++ +.+.. +.++|+|+.+++. ..+.+.|.++||.++||..|+. ..+++|++++. ++++
T Consensus 308 ~~g-~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~ 372 (384)
T 1bs0_A 308 DLP-FTLAD--------------SCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQD 372 (384)
T ss_dssp TSS-CEECS--------------CCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHH
T ss_pred hcC-CcccC--------------CCCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHH
Confidence 873 33321 2334677877642 6677778888999999987753 34799999975 8999
Q ss_pred HHHHHHHHHHH
Q 018172 337 FNIFLERLSAI 347 (360)
Q Consensus 337 ~~~~~~~l~~~ 347 (360)
+++++++|+++
T Consensus 373 i~~~~~~l~~~ 383 (384)
T 1bs0_A 373 IDRLLEVLHGN 383 (384)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999999875
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=243.67 Aligned_cols=278 Identities=14% Similarity=0.101 Sum_probs=216.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC-
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG- 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~- 116 (360)
..++|++++++++. + ++|++++| ++++..++..++++||. |+++.|+|..+...++..|.+++.++.
T Consensus 92 ~~~l~~~la~~~g~------~-~~i~~~sG-s~a~~~~~~~~~~~gd~----v~~~~~~~~~~~~~~~~~g~~~~~~~~~ 159 (401)
T 1fc4_A 92 HKELEQKLAAFLGM------E-DAILYSSC-FDANGGLFETLLGAEDA----IISDALNHASIIDGVRLCKAKRYRYANN 159 (401)
T ss_dssp HHHHHHHHHHHHTC------S-EEEEESCH-HHHHHTTHHHHCCTTCE----EEEETTCCHHHHHHHHTSCSEEEEECTT
T ss_pred HHHHHHHHHHHhCC------C-cEEEeCCh-HHHHHHHHHHHcCCCCE----EEEcchhHHHHHHHHHHcCCceEEECCC
Confidence 38999999999975 3 56666665 77888899999999998 999999999898889999999998874
Q ss_pred Ccccccc--C---C---CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeeccc-CCCCC------cCCC-CCCcc
Q 018172 117 DANTFDK--N---N---GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYY-WPQYT------PITG-AADHD 179 (360)
Q Consensus 117 ~~~~~~~--~---~---~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~-~~~~~------~~~~-~~~~~ 179 (360)
|.+.++. + + ++++|++++||||||.+++ +.+.++|+++|+++|+|++|+ +.... ...+ ..+.+
T Consensus 160 d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~d 239 (401)
T 1fc4_A 160 DMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVD 239 (401)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCS
T ss_pred CHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCc
Confidence 3343332 1 1 6899999999999999998 678888999999999999996 32211 1112 23568
Q ss_pred EEEecccccc-CCCCceEEEEeecCHHHHHHHHHHHh--hccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHH
Q 018172 180 IMLFTLSKCT-GHAGSRIGWALVKDTEVARKMTRFIE--LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWN 256 (360)
Q Consensus 180 i~~~S~sK~~-~~~G~r~G~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (360)
+++.|+||.+ +++| ||+++ ++++++.+..... ..+.+.+.+.|.++.++++.+. ..++.+++++++++
T Consensus 240 i~~~s~sK~~~~~~g---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~ 310 (401)
T 1fc4_A 240 IITGTLGKALGGASG---GYTAA-RKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVE-----AGSELRDRLWANAR 310 (401)
T ss_dssp EEEEESSSTTCSSSC---EEEEE-CHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred EEEecchhhccCCCC---EEEEc-CHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHH
Confidence 9999999999 6555 99999 8999999876542 1255788899999888887431 24678889999999
Q ss_pred HHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCC--CCeEEEEec
Q 018172 257 MLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGAD--AKYARVSML 331 (360)
Q Consensus 257 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~--~~~~R~s~~ 331 (360)
++.+.|+++ ++.+. + +.++|+|+++++. ..+.+.|.++||.++||..|+.. .+++|+++.
T Consensus 311 ~l~~~L~~~-g~~~~-~-------------~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~ 375 (401)
T 1fc4_A 311 QFREQMSAA-GFTLA-G-------------ADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMS 375 (401)
T ss_dssp HHHHHHHHT-TCCBC-C-------------SSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECC
T ss_pred HHHHHHHHc-CCccc-C-------------CCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeC
Confidence 999999987 34433 2 2344788888652 66777888889999999877642 468999997
Q ss_pred C--ChHHHHHHHHHHHHHHhch
Q 018172 332 S--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 332 ~--~~e~~~~~~~~l~~~~~~~ 351 (360)
. +++++++++++|++++++.
T Consensus 376 ~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 376 AAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 3 8999999999999998754
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-31 Score=244.73 Aligned_cols=288 Identities=15% Similarity=0.070 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc----CCCCCCCceEEEeCCCCCCcHHHHHH---hCCee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS----SPGGPEPISVVSAAPYYSQYPAETDY---LRSGL 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~----~~gd~~~~~vl~~~p~~~~~~~~~~~---~g~~~ 111 (360)
.++|+.++++++. ++++|++|+|+++++..++..+. ++||+ |++++|+|+.+...+.. .|+++
T Consensus 46 ~~l~~~la~~~g~------~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~----Vl~~~~~~~~~~~~~~~~~~~g~~~ 115 (382)
T 4eb5_A 46 QEAREKVAKLVNG------GGGTVVFTSGATEANNLAIIGYAMRNARKGKH----ILVSAVEHMSVINPAKFLQKQGFEV 115 (382)
T ss_dssp HHHHHHHHHHHTC------TTEEEEEESSHHHHHHHHHHHHHHHHGGGCCE----EEEETTCCHHHHHHHHHHTTTTCEE
T ss_pred HHHHHHHHHHhCC------CCCeEEEcCchHHHHHHHHHHHHhhccCCCCE----EEECCCcchHHHHHHHHHHhCCcEE
Confidence 8999999999985 44689999999999999999997 88998 99999999988777654 69999
Q ss_pred eeecCCccc-ccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEE
Q 018172 112 YKWDGDANT-FDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182 (360)
Q Consensus 112 ~~~~~~~~~-~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~ 182 (360)
+.++.+.++ ++. ++++++|++++|+||||.+++ +.+.++|+++|++ |+|++|..+..+......+.++++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~ 194 (382)
T 4eb5_A 116 EYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLT 194 (382)
T ss_dssp EEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEE
T ss_pred EEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEE
Confidence 999876432 211 357899999999999999998 6788889989999 999999854322111223578999
Q ss_pred eccccccCCCCceEEEEeecCHHHHHHHHH----HHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTR----FIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
+|+||.+|++| +||++++++..+..+.. .......+.+...+.++.++++.+. +.+++.+++++++++++
T Consensus 195 ~s~sK~~g~~g--~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~----~~~~~~~~~~~~~~~~l 268 (382)
T 4eb5_A 195 ISSNDIYGPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITA----MEWREEAERLRRLRDRI 268 (382)
T ss_dssp EETGGGTCCSS--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred eehHHhcCCCc--eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHH
Confidence 99999988767 78888844311111100 0112234556666666666666432 46788999999999999
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCCCCC---------------
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRRFGA--------------- 321 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~f~~--------------- 321 (360)
.+.|++++++.+..+.+. ..++++++.+++ .+.+.+.|.++||.+++|..|..
T Consensus 269 ~~~L~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~ 338 (382)
T 4eb5_A 269 IDNVLKIEESYLNGHPEK----------RLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLK 338 (382)
T ss_dssp HHHHTTSTTEEECSCSSS----------BCTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCC
T ss_pred HHHHhhCCCeEEeCCccc----------CCCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCC
Confidence 999998866655444321 113355666652 36677788889999999976432
Q ss_pred ---CCCeEEEEecC--ChHHHHHHHHHHHHHHhchhc
Q 018172 322 ---DAKYARVSMLS--REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 322 ---~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~~ 353 (360)
.++++||+++. ++|++++++++|++++++.++
T Consensus 339 ~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 339 HEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp HHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 15799999974 899999999999999977553
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=243.01 Aligned_cols=285 Identities=13% Similarity=0.093 Sum_probs=213.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh---cCCCCCCCceEEEeCCCCCCcHHHHHH----hCCe
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL---SSPGGPEPISVVSAAPYYSQYPAETDY----LRSG 110 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l---~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~ 110 (360)
..++|++++++++. ++++|++|+|+++++..++.++ +++||+ |+++.|+|..+...+.. .|++
T Consensus 71 ~~~l~~~la~~~g~------~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~----vi~~~~~~~~~~~~~~~~~~~~g~~ 140 (406)
T 3cai_A 71 LDAAREAVADLVNA------DPGGVVLGADRAVLLSLLAEASSSRAGLGYE----VIVSRLDDEANIAPWLRAAHRYGAK 140 (406)
T ss_dssp HHHHHHHHHHHHTC------CGGGEEEESCHHHHHHHHHHHTGGGGBTTCE----EEEETTSCGGGTHHHHHHHHHHBCE
T ss_pred HHHHHHHHHHHhCC------CCCeEEEeCChHHHHHHHHHHHhhccCCCCE----EEEcCCccHHHHHHHHHHHHhcCCe
Confidence 38999999999985 4468999999999999999887 788988 99999999987766554 6999
Q ss_pred eeeecCCc-c------cccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccE
Q 018172 111 LYKWDGDA-N------TFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDI 180 (360)
Q Consensus 111 ~~~~~~~~-~------~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i 180 (360)
++.++.+. + .++. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+..+......+.++
T Consensus 141 v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~ 220 (406)
T 3cai_A 141 VKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADV 220 (406)
T ss_dssp EEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSE
T ss_pred EEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCE
Confidence 99988762 2 2211 468999999999999999998 788888999999999999998643321112345789
Q ss_pred EEeccccccCCCCceEE-EEeecCHHHHHHHHHHHh---------hccccCChHHHHHHHHHhcccCCC-----------
Q 018172 181 MLFTLSKCTGHAGSRIG-WALVKDTEVARKMTRFIE---------LGSIGVSKESQLRAAKILGIVSDD----------- 239 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G-~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~----------- 239 (360)
++.|+||.+| ++ +| |+++ ++++++.+..... ....+.+...+.++.++++.+...
T Consensus 221 ~~~s~~K~~g-~~--~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~ 296 (406)
T 3cai_A 221 VTVNAHAWGG-PP--IGAMVFR-DPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRER 296 (406)
T ss_dssp EEEEGGGGTS-CS--CEEEEES-CHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHH
T ss_pred EEeehhhhcC-CC--cCeEEEE-ehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhh
Confidence 9999999887 55 89 9998 7888777654321 113445666665655566543221
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCC
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGR 317 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~ 317 (360)
+..++++.+++++++++++.+.|++++++.+..+... .+.++++.+++ ...+.+.|.++||.+++|.
T Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~g~ 365 (406)
T 3cai_A 297 LAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEA-----------QIPVVSFAVHKVPADRVVQRLADNGILAIANT 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSS-----------BCSEEEEEETTBCHHHHHHHHHHTTEECEECC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccc-----------cCCEEEEEECCcCHHHHHHHHHHCCcEEecCC
Confidence 1126889999999999999999999866655443211 12256666653 3667778888999999987
Q ss_pred ------CCCC--CCCeEEEEecC--ChHHHHHHHHHHHHH
Q 018172 318 ------RFGA--DAKYARVSMLS--REEIFNIFLERLSAI 347 (360)
Q Consensus 318 ------~f~~--~~~~~R~s~~~--~~e~~~~~~~~l~~~ 347 (360)
.|+. ..+++|+++.. ++|++++++++|+++
T Consensus 366 ~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 366 GSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp SCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred hHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence 4443 24799999976 799999999998753
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=243.90 Aligned_cols=285 Identities=15% Similarity=0.090 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc----CCCCCCCceEEEeCCCCCCcHHHHHH---hCCee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS----SPGGPEPISVVSAAPYYSQYPAETDY---LRSGL 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~----~~gd~~~~~vl~~~p~~~~~~~~~~~---~g~~~ 111 (360)
.++|+.++++++. ++++|++|+|+++++..++..+. ++||+ |+++.|+|+.+...+.. .|+++
T Consensus 46 ~~~~~~la~~~~~------~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~----vi~~~~~~~~~~~~~~~~~~~g~~~ 115 (382)
T 4hvk_A 46 QEAREKVAKLVNG------GGGTVVFTSGATEANNLAIIGYAMRNARKGKH----ILVSAVEHMSVINPAKFLQKQGFEV 115 (382)
T ss_dssp HHHHHHHHHHTTC------TTEEEEEESSHHHHHHHHHHHHHHHHGGGCCE----EEEETTCCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCC------CcCeEEEECCchHHHHHHHHHhhhhhcCCCCE----EEECCCCcHHHHHHHHHHHhcCCEE
Confidence 6899999999885 55689999999999999999987 89998 99999999998876655 59999
Q ss_pred eeecCCccc-ccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEE
Q 018172 112 YKWDGDANT-FDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182 (360)
Q Consensus 112 ~~~~~~~~~-~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~ 182 (360)
+.++.+.++ ++. ++++++|++++|+||||.+++ +.+.++|+++|+ +|+|++|..+.........+.++++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~ 194 (382)
T 4hvk_A 116 EYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLT 194 (382)
T ss_dssp EEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEE
T ss_pred EEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEE
Confidence 999876433 211 468899999999999999988 678889999999 9999998754332222234578999
Q ss_pred eccccccCCCCceEEEEeecCHHHHHHHHHH-------HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 018172 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRF-------IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERW 255 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (360)
.|+||.+|++| +|++++.++. .+... ......+.+...+.++.++++.. ..++++.++++++++
T Consensus 195 ~s~~K~~g~~g--~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~----~~~~~~~~~~~~~~~ 265 (382)
T 4hvk_A 195 ISSNDIYGPKG--VGALWIRKEA---KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEIT----AMEWREEAERLRRLR 265 (382)
T ss_dssp EESGGGTSCTT--CEEEEEETTC---CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred EeHHHhcCCCc--eEEEEEcCcc---CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHH----HhhHHHHHHHHHHHH
Confidence 99999888777 6666663332 11111 11123445667777776666532 267889999999999
Q ss_pred HHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCCCCCC-----------
Q 018172 256 NMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRRFGAD----------- 322 (360)
Q Consensus 256 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~f~~~----------- 322 (360)
+++.+.|++++++.+..+.+.. .++++++.+++ .+.+.+.|.++||.+++|..|...
T Consensus 266 ~~l~~~L~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~ 335 (382)
T 4hvk_A 266 DRIIDNVLKIEESYLNGHPEKR----------LPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMAC 335 (382)
T ss_dssp HHHHHHHTTSTTEEECSCSSSB----------CTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHT
T ss_pred HHHHHHHhcCCCeEEeCCcccc----------CCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHc
Confidence 9999999988777665544211 12244555543 377888889999999999876532
Q ss_pred -------CCeEEEEecC--ChHHHHHHHHHHHHHHhchhc
Q 018172 323 -------AKYARVSMLS--REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 323 -------~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~~ 353 (360)
++++|++++. ++|++++++++|++++++.++
T Consensus 336 g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 336 GLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp TCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5799999975 899999999999999987654
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-30 Score=238.95 Aligned_cols=290 Identities=12% Similarity=0.073 Sum_probs=218.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCC--CcHHHHHHhCCeeeeecC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS--QYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~--~~~~~~~~~g~~~~~~~~ 116 (360)
.++++.++++++. ..+++|++|+|+++++..++..++++||+ |+++.++|. .+...++..|.+++.++.
T Consensus 59 ~~l~~~la~~~~~-----~~~~~v~~~~gg~~al~~~~~~~~~~gd~----vl~~~~~~~~~~~~~~~~~~g~~~~~~~~ 129 (393)
T 3kgw_A 59 EEIKQGIQYVFQT-----RNPLTLVVSGSGHCAMETALFNLLEPGDS----FLTGTNGIWGMRAAEIADRIGARVHQMIK 129 (393)
T ss_dssp HHHHHHHHHHHTC-----CCSEEEEESCCTTTHHHHHHHHHCCTTCE----EEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHhCC-----CCCcEEEEeCCcHHHHHHHHHhcCCCCCE----EEEEeCCchhHHHHHHHHHcCCceEEEeC
Confidence 7889999998885 12335999999999999999999999998 999988874 236778888999999887
Q ss_pred Cccc-ccc-------CC-CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccc
Q 018172 117 DANT-FDK-------NN-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLS 186 (360)
Q Consensus 117 ~~~~-~~~-------~~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~s 186 (360)
+.++ ++. ++ ++++|++++||||||.+++ +.+.++|+++|+++|+|++|..+.........+.++++.|+|
T Consensus 130 ~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~s 209 (393)
T 3kgw_A 130 KPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQ 209 (393)
T ss_dssp CTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESS
T ss_pred CCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCc
Confidence 6543 222 23 7899999999999999998 678888999999999999998544333334556789999999
Q ss_pred cccCCCCceEEEEeecCHHHHHHHHHHHh-----------------------hccccCChHHHHHHHHHhcccCCCchhH
Q 018172 187 KCTGHAGSRIGWALVKDTEVARKMTRFIE-----------------------LGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 187 K~~~~~G~r~G~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
|.++ .+.++||+++ ++++++.+..... ....+.+...+.++.++++... +..
T Consensus 210 K~~~-~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~---~~~ 284 (393)
T 3kgw_A 210 KVLN-APPGISLISF-NDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIA---EQG 284 (393)
T ss_dssp STTC-CCSSCEEEEE-CHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHH---HHC
T ss_pred cccc-CCCceeEEEE-CHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHH---Hhh
Confidence 9774 2334899998 8999888865321 1123557777777767666432 145
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhh-CeeeeCCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAE-RIMARGGRRF 319 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~-gI~~~pg~~f 319 (360)
+++.+++++++++++.+.|+++ ++.+..+.+.. ..+.++++.+++ ...+.+.|.++ ||.+++|..+
T Consensus 285 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~ 354 (393)
T 3kgw_A 285 LENCWRRHREATAHLHKHLQEM-GLKFFVKDPEI---------RLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGP 354 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGG---------BCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhh---------cCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCccc
Confidence 7899999999999999999998 55554333222 112355666653 25666666666 9999998855
Q ss_pred CCCCCeEEEEe-cC--ChHHHHHHHHHHHHHHhchhc
Q 018172 320 GADAKYARVSM-LS--REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 320 ~~~~~~~R~s~-~~--~~e~~~~~~~~l~~~~~~~~~ 353 (360)
. .++++|+++ +. +++++++++++|++++++.++
T Consensus 355 ~-~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 390 (393)
T 3kgw_A 355 T-EERVLRIGLLGYNATTENVDRVAEALREALQHCPK 390 (393)
T ss_dssp G-TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCB
T ss_pred C-CCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhh
Confidence 4 367999998 53 899999999999999987543
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=234.30 Aligned_cols=284 Identities=10% Similarity=0.054 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeC-CCCCC-cHHHHHHhCCeeeeecC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAA-PYYSQ-YPAETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~-p~~~~-~~~~~~~~g~~~~~~~~ 116 (360)
.++|++++++++. + ...+++++|+|+++++..++..+.++||. |+++. ++|+. +..++...|++++.++.
T Consensus 40 ~~l~~~la~~~g~---~-~~~~~v~~~~g~t~a~~~~~~~~~~~gd~----vi~~~~~~~~~~~~~~~~~~g~~~~~v~~ 111 (366)
T 1m32_A 40 EQIRQQLTALATA---S-EGYTSVLLQGSGSYAVEAVLGSALGPQDK----VLIVSNGAYGARMVEMAGLMGIAHHAYDC 111 (366)
T ss_dssp HHHHHHHHHHHCS---S-SSEEEEEEESCHHHHHHHHHHHSCCTTCC----EEEEESSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHhCC---C-CcCcEEEEecChHHHHHHHHHHhcCCCCe----EEEEeCCCccHHHHHHHHHhCCceEEEeC
Confidence 9999999999972 1 11247999999999999999999999998 77665 66764 56777888999998887
Q ss_pred Cccc-ccc---------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecc
Q 018172 117 DANT-FDK---------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTL 185 (360)
Q Consensus 117 ~~~~-~~~---------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~ 185 (360)
+.++ ++. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+..+......+.+++++|+
T Consensus 112 ~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~ 191 (366)
T 1m32_A 112 GEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSA 191 (366)
T ss_dssp CTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEES
T ss_pred CCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecC
Confidence 6432 211 235899999999999999998 67888899899999999999865433222334678999999
Q ss_pred cccc-CCCCceEEEEeecCHHHHHHHHHHH------------------hhccccCChHHHHHHHHHhcccCCCchhH--H
Q 018172 186 SKCT-GHAGSRIGWALVKDTEVARKMTRFI------------------ELGSIGVSKESQLRAAKILGIVSDDYPNF--F 244 (360)
Q Consensus 186 sK~~-~~~G~r~G~~~~~~~~~~~~l~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 244 (360)
||.+ +++ ++||+++ ++++++.+.... .....+.+...+.++.++++.+. .+ +
T Consensus 192 ~K~~~~~~--g~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----~~g~~ 264 (366)
T 1m32_A 192 NKCIQGVP--GFAFVIA-REQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELA----KEGGV 264 (366)
T ss_dssp SSTTCCCS--SEEEEEE-EHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHH----HHTHH
T ss_pred cccccCCC--ceEEEEE-CHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHH----HccCH
Confidence 9976 544 4799999 777776653310 01124677777877777776432 33 6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----hHHHHHHHHhhCeeeeCCCCC
Q 018172 245 EYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----DEDCEKLLRAERIMARGGRRF 319 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gI~~~pg~~f 319 (360)
++.+++++++++++.+.|+++ ++.+..+... ..+.++|+.+++ ...+.+.|.++||.++||..|
T Consensus 265 ~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~ 333 (366)
T 1m32_A 265 AARHQRYQQNQRSLVAGMRAL-GFNTLLDDEL----------HSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS 333 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGG----------BCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHC-CCeeccCchh----------cCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCC
Confidence 788999999999999999988 4554333110 122367787763 267778888889999999877
Q ss_pred CCCCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 320 GADAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 320 ~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
+ .+++|++++. +++++++++++|++++++
T Consensus 334 ~--~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 334 Q--SDCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp S--SCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred C--CCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 3 6799999975 799999999999998764
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=237.42 Aligned_cols=283 Identities=13% Similarity=0.065 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc--HHHHHHhCCeeeeecC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY--PAETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~--~~~~~~~g~~~~~~~~ 116 (360)
+++|++++++++.. . ++++|++|+|+++++..++..+.+ |+ |+++.|+|..+ ...++..|++++.++.
T Consensus 36 ~~l~~~la~~~g~~---~-~~~~v~~t~g~t~a~~~~~~~~~~--d~----vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 105 (353)
T 2yrr_A 36 RAIQERLAALFDPG---E-GALVAALAGSGSLGMEAGLANLDR--GP----VLVLVNGAFSQRVAEMAALHGLDPEVLDF 105 (353)
T ss_dssp HHHHHHHHHHHCCC---T-TCEEEEESSCHHHHHHHHHHTCSC--CC----EEEEECSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHhCCC---C-CCceEEEcCCcHHHHHHHHHHhcC--Cc----EEEEcCCCchHHHHHHHHHcCCceEEEeC
Confidence 89999999999851 1 246899999999999999999986 66 99999998875 4556778999999987
Q ss_pred Cccc-ccc-------CC-CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccc
Q 018172 117 DANT-FDK-------NN-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLS 186 (360)
Q Consensus 117 ~~~~-~~~-------~~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~s 186 (360)
+.++ ++. ++ ++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+..+......+.++++.|++
T Consensus 106 ~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~ 185 (353)
T 2yrr_A 106 PPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQ 185 (353)
T ss_dssp CTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTT
T ss_pred CCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCc
Confidence 6442 221 23 7899999999999999998 677888998999999999997543321112234589999999
Q ss_pred ccc-CCCCceEEEEeecCHHHHHHHH-------------HH--HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHH
Q 018172 187 KCT-GHAGSRIGWALVKDTEVARKMT-------------RF--IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRL 250 (360)
Q Consensus 187 K~~-~~~G~r~G~~~~~~~~~~~~l~-------------~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (360)
|.+ +++| +||+++ ++++++.+. .. ......+.+...+.++.++++.+.. ..+++.+++
T Consensus 186 K~~~~~~g--~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~ 259 (353)
T 2yrr_A 186 KCLSAPPG--LAPIAA-SLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLE---EGVAARERR 259 (353)
T ss_dssp STTCCCSS--CEEEEE-CHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHH---HCHHHHHHH
T ss_pred ccccCCCc--eEEEEE-CHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHH---hhHHHHHHH
Confidence 954 5566 799999 788877664 11 1122345677777777776764321 337888999
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCCCCCCCCCeEE
Q 018172 251 MSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGGRRFGADAKYAR 327 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~~f~~~~~~~R 327 (360)
++++++++.+.|+++ ++.+..+.. ..+.++|+.+++ .+.+.+.|.++||.++||..|.. ++++|
T Consensus 260 ~~~~~~~l~~~L~~~-g~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~-~~~iR 326 (353)
T 2yrr_A 260 AREVYAWVLEELKAR-GFRPYPKAS-----------PLPTVLVVRPPEGVDADRLVRALYAEGVAVAGGIGPTR-GQVLR 326 (353)
T ss_dssp HHHHHHHHHHHHHHT-TCEESCSSS-----------BCTTEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGT-TTCEE
T ss_pred HHHHHHHHHHHHHHC-CCccccCcc-----------CCCeEEEEECCCCCCHHHHHHHHHHCCEEEeCCccccC-CCeEE
Confidence 999999999999987 555443321 012245677652 36777888888999999987753 67999
Q ss_pred EEecC--ChHHHH-HHHHHHHHHHhc
Q 018172 328 VSMLS--REEIFN-IFLERLSAIQGG 350 (360)
Q Consensus 328 ~s~~~--~~e~~~-~~~~~l~~~~~~ 350 (360)
+++.. ++++++ +++++|++++++
T Consensus 327 i~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 327 LGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp EECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred EecCccCCHHHHHHHHHHHHHHHHhh
Confidence 99843 888888 999999998764
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=246.88 Aligned_cols=278 Identities=11% Similarity=0.063 Sum_probs=212.5
Q ss_pred HHHHHH-HHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeec--
Q 018172 39 PELAEA-INNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWD-- 115 (360)
Q Consensus 39 ~~lr~~-la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~-- 115 (360)
+++|+. ++++++. + +|++|+|+++++..++..++++||+ |+++.|+|..+...++..|++++.++
T Consensus 56 ~~l~~~~la~~~~~------~--~v~~~~g~t~a~~~~~~~~~~~gd~----vl~~~~~~~~~~~~~~~~g~~~~~v~~~ 123 (371)
T 2e7j_A 56 HDFIHNQLPKFLGC------D--VARVTNGAREAKFAVMHSLAKKDAW----VVMDENCHYSSYVAAERAGLNIALVPKT 123 (371)
T ss_dssp HHHHHTHHHHHTTS------S--EEEEESSHHHHHHHHHHHHCCTTCE----EEEETTCCHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHcCC------C--EEEEeCChHHHHHHHHHHHhCCCCE----EEEccCcchHHHHHHHHcCCeEEEeecc
Confidence 999999 9999985 3 8999999999999999999999998 99999999999999999999999998
Q ss_pred CCcc------cccc--C-----CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEE
Q 018172 116 GDAN------TFDK--N-----NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181 (360)
Q Consensus 116 ~~~~------~~~~--~-----~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~ 181 (360)
.+.+ .++. + +++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+..+......+.+++
T Consensus 124 ~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~ 203 (371)
T 2e7j_A 124 DYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFI 203 (371)
T ss_dssp CTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEE
T ss_pred cCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEE
Confidence 6532 2211 2 67899999999999999988 6788889999999999999997543211223356799
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHH-HHHHHh--hc-----cccCChHHHHHHHHHhcccCCCchhHHHHHHHHH--
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARK-MTRFIE--LG-----SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM-- 251 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~-l~~~~~--~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-- 251 (360)
++|+||.++. +.|+||+++ ++++++. +..... .. ..+.+...+.++.++++.+. . +.++++
T Consensus 204 ~~s~sK~~~~-~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~---~~~~~~~~ 274 (371)
T 2e7j_A 204 VGSGHKSMAA-SGPIGVMGM-KEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVR----E---RIKRWDEE 274 (371)
T ss_dssp EEEHHHHSSC-CSSCEEEEE-CTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHH----H---HGGGHHHH
T ss_pred EecCCcCCCC-CCCcEEEEE-echhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHH----H---HHHHHHHH
Confidence 9999999884 459999999 6777666 654332 11 33455555555555555221 1 566777
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCC-----CCCCeE
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFG-----ADAKYA 326 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~-----~~~~~~ 326 (360)
+++++++.+.|+++ ++.+..+.. ..++++|+++++...+.+.|.++||.+.| ..+. ..++++
T Consensus 275 ~~~~~~l~~~L~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-~~~~~~~~g~~~~~i 341 (371)
T 2e7j_A 275 VEKARRFAAEMEKL-GIKQLGDNP-----------HNHDLMFFHAEVLYEISKKAKGGRFFLYR-ELKSRKIHGIKPGLT 341 (371)
T ss_dssp HHHHHHHHHHHHHT-TCEEESSSS-----------CCSSEEEEECHHHHHHHHHSSSGGGHHHH-HHHHTTEECSCTTCC
T ss_pred HHHHHHHHHHHHHc-CcEEecCCC-----------ccCceEEEECCCHHHHHHHHHHCCEEEEe-ccccccccCCCCCce
Confidence 88889999999887 555443321 12347788876336677788899999988 4332 236799
Q ss_pred E-EEec---CChHHHHHHHHHHHHHHhc
Q 018172 327 R-VSML---SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 327 R-~s~~---~~~e~~~~~~~~l~~~~~~ 350 (360)
| ++++ .++|++++++++|++++++
T Consensus 342 Rii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 342 RYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp SEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 9 9997 5899999999999998864
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=236.83 Aligned_cols=287 Identities=12% Similarity=0.040 Sum_probs=218.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCc-EEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC--cHHHHHHhCCeeeeec
Q 018172 39 PELAEAINNLHHVVDNAVSDGRH-IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ--YPAETDYLRSGLYKWD 115 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~-i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~--~~~~~~~~g~~~~~~~ 115 (360)
.++++.++++++. +.++ +++|+|+++++..++..++++||+ |+++.|+|.+ +...++..|++++.++
T Consensus 49 ~~~~~~la~~~~~------~~~~~v~~~~sgt~al~~~~~~~~~~gd~----Vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 118 (411)
T 3nnk_A 49 NEVMALYRGVFRT------ENRWTMLVDGTSRAGIEAILVSAIRPGDK----VLVPVFGRFGHLLCEIARRCRAEVHTIE 118 (411)
T ss_dssp HHHHHHHHHHHTC------CCSEEEEEESCHHHHHHHHHHHHCCTTCE----EEEEECSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHhCC------CCCcEEEECCCcHHHHHHHHHHhcCCCCE----EEEecCCchHHHHHHHHHHcCCeEEEEe
Confidence 7889999999885 3334 888999999999999999999998 9999999977 8888999999999998
Q ss_pred CCcccc-cc-------C-CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecc
Q 018172 116 GDANTF-DK-------N-NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTL 185 (360)
Q Consensus 116 ~~~~~~-~~-------~-~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~ 185 (360)
.+.++. +. + .++++|++++|+||||.+++ +.+.++|+++|+++|+|+++..+..+......+.++++.|+
T Consensus 119 ~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~ 198 (411)
T 3nnk_A 119 VPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGM 198 (411)
T ss_dssp CCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCS
T ss_pred cCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecC
Confidence 764322 11 2 27899999999999999988 67888899899999999998865443333455688999999
Q ss_pred ccccCCCCceEEEEeecCHHHHHHHHHHH------------------------------------hhccccCChHHHHHH
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARKMTRFI------------------------------------ELGSIGVSKESQLRA 229 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~l~~~~------------------------------------~~~~~~~~~~~~~~~ 229 (360)
||.++ .+.++||+++ ++++++.+.... .....+.+...+.++
T Consensus 199 ~K~l~-~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 276 (411)
T 3nnk_A 199 QKCLG-GPSGTSPITL-SARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGA 276 (411)
T ss_dssp TTTTC-CCSSEEEEEE-CHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHH
T ss_pred ccccC-CCCceEEEEE-CHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHH
Confidence 99744 3335899998 899988887543 112235567777777
Q ss_pred HHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHH
Q 018172 230 AKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLL 306 (360)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l 306 (360)
.++++.... ..+++.+++++++++++.+.|+++ ++.+..+.+. ..++++++.+++ .+.+.+.|
T Consensus 277 ~~al~~~~~---~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~l 342 (411)
T 3nnk_A 277 RECARLILQ---EGLDYGIARHKLHGDALVKGIQAM-GLETFGDLKH----------KMNNVLGVVIPQGINGDQARKLM 342 (411)
T ss_dssp HHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGG----------BCSSEEEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHc-CCEeCCCccc----------ccccEEEEECCCCCCHHHHHHHH
Confidence 676664321 237889999999999999999987 4555444321 123467777753 25666666
Q ss_pred Hhh-CeeeeCCCCCCCCCCeEEEEe-cC--ChHHHHHHHHHHHHHHhchh
Q 018172 307 RAE-RIMARGGRRFGADAKYARVSM-LS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 307 ~~~-gI~~~pg~~f~~~~~~~R~s~-~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
.++ ||.+++|.... .++++|+++ .. ++|++++++++|++++++..
T Consensus 343 ~~~~gi~v~~g~~~~-~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 343 LEDFGIEIGTSFGPL-HGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp HHHHSEEEEECCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCeEEeCccCCC-CCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 554 99999985332 367999998 43 79999999999999997653
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=243.74 Aligned_cols=285 Identities=15% Similarity=0.102 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHh---CCee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYL---RSGL 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~---g~~~ 111 (360)
.++|+.++++++. ++++|++|+|+++++..++..+.+ +||. |+++.|+|+.+...+..+ |+++
T Consensus 71 ~~l~~~la~~~~~------~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~----Vl~~~~~~~~~~~~~~~~~~~g~~~ 140 (423)
T 3lvm_A 71 DIARNQIADLVGA------DPREIVFTSGATESDNLAIKGAANFYQKKGKH----IITSKTEHKAVLDTCRQLEREGFEV 140 (423)
T ss_dssp HHHHHHHHHHHTC------CGGGEEEESSHHHHHHHHHHHHHHHHTTTCCE----EEEETTSCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCC------CCCeEEEeCChHHHHHHHHHHHHHhhccCCCE----EEECCccchHHHHHHHHHHHcCCEE
Confidence 7899999999986 556899999999999999998873 7888 999999999998877544 9999
Q ss_pred eeecCCccc------ccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEE
Q 018172 112 YKWDGDANT------FDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182 (360)
Q Consensus 112 ~~~~~~~~~------~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~ 182 (360)
+.++.+.++ ++. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+..+......+.++++
T Consensus 141 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~ 220 (423)
T 3lvm_A 141 TYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 220 (423)
T ss_dssp EEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEE
T ss_pred EEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEE
Confidence 999876432 211 468899999999999999998 67888999999999999999875543333455678999
Q ss_pred eccccccCCCCceEEEEeecCHHHHHHHHHHH-------hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 018172 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFI-------ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERW 255 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (360)
.|+||.+|++| +||+++ +++..+.+.... .....+.+...+.++.++++.+. .++++.++++++++
T Consensus 221 ~s~sK~~g~~g--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----~~~~~~~~~~~~~~ 293 (423)
T 3lvm_A 221 FSGHKIYGPKG--IGALYV-RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAK----EEMATEMERLRGLR 293 (423)
T ss_dssp EESTTTTSCSS--CEEEEE-CBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred echHHhcCCCC--eEEEEE-eccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 99999988777 899998 555555444322 12234566677777666666432 45889999999999
Q ss_pred HHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--chHHHHHHHHhhCeeeeCCCCCCCC-----------
Q 018172 256 NMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--EDEDCEKLLRAERIMARGGRRFGAD----------- 322 (360)
Q Consensus 256 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gI~~~pg~~f~~~----------- 322 (360)
+++.+.|++++++.+..+.+.. .++++++.++ +...+.+.|.+ |.+.+|..|...
T Consensus 294 ~~l~~~L~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~ 361 (423)
T 3lvm_A 294 NRLWNGIKDIEEVYLNGDLEHG----------APNILNVSFNYVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRAL 361 (423)
T ss_dssp HHHHHHHTTSTTEEEESCSTTB----------CTTEEEEEETTSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHH
T ss_pred HHHHHHHhcCCCEEEeCCcccc----------CCCeEEEEeCCCCHHHHHHHHhh--heeccCccccCCCccccHHHHHh
Confidence 9999999988776665444311 1123333333 23666777766 999998765421
Q ss_pred -------CCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 323 -------AKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 323 -------~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
.+++|+++.. ++|++++++++|++++++.+
T Consensus 362 g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~ 400 (423)
T 3lvm_A 362 GLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLR 400 (423)
T ss_dssp TCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 4799999975 88999999999999997654
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-29 Score=235.09 Aligned_cols=285 Identities=14% Similarity=0.044 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEE-EcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC--cHHHHHHhCCeeeeec
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIV-IGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ--YPAETDYLRSGLYKWD 115 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~-~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~--~~~~~~~~g~~~~~~~ 115 (360)
.++|+.++++++. +.++++ +++|+++++..++..++++||+ |+++.|+|.. +...++..|++++.++
T Consensus 47 ~~l~~~la~~~g~------~~~~~~~~~~s~t~al~~~~~~l~~~gd~----Vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 116 (416)
T 3isl_A 47 NETMEMLRELFQT------KNRWAYPIDGTSRAGIEAVLASVIEPEDD----VLIPIYGRFGYLLTEIAERYGANVHMLE 116 (416)
T ss_dssp HHHHHHHHHHTTC------CCSEEEEEESCHHHHHHHHHHHHCCTTCE----EEEEESSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHhCC------CCCcEEEecCcHHHHHHHHHHHhcCCCCE----EEEecCCcccHHHHHHHHhcCCeeEEEe
Confidence 7889999999885 444555 8899999999999999999998 9999999987 6778888999999998
Q ss_pred CCcccc-cc-------C-CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecc
Q 018172 116 GDANTF-DK-------N-NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTL 185 (360)
Q Consensus 116 ~~~~~~-~~-------~-~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~ 185 (360)
.+.++. +. + +++++|++++||||||..++ +.+.++|+++|+++|+|++|+.+.........+.++++.|+
T Consensus 117 ~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~ 196 (416)
T 3isl_A 117 CEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGT 196 (416)
T ss_dssp CCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCS
T ss_pred cCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecC
Confidence 764432 11 2 47899999999999999998 77888999999999999999865444333456688999999
Q ss_pred ccccCCCCceEEEEeecCHHHHHHHHHHH--------------------------------------hhccccCChHHHH
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARKMTRFI--------------------------------------ELGSIGVSKESQL 227 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~l~~~~--------------------------------------~~~~~~~~~~~~~ 227 (360)
||.++ .+.++|++++ ++++++.+...+ .....+.+...+.
T Consensus 197 ~K~l~-g~~g~g~~~~-~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (416)
T 3isl_A 197 QKCLS-VPSGMAPITY-NERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLY 274 (416)
T ss_dssp SSTTC-CCSSEEEEEE-CHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHH
T ss_pred ccccC-CCCCeEEEEE-CHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHH
Confidence 99643 3335899998 888888876421 1123355677777
Q ss_pred HHHHHhcccCCCchhH-HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHH
Q 018172 228 RAAKILGIVSDDYPNF-FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCE 303 (360)
Q Consensus 228 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 303 (360)
++.++++... .+ +++.+++++++++++.+.|++. ++.+..+.+. ..+.++++.+++ .+.+.
T Consensus 275 a~~~al~~~~----~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~ 339 (416)
T 3isl_A 275 ALREGVRLVL----EEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSC----------KMPVVTCVEIPGGIDGESVR 339 (416)
T ss_dssp HHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGG----------BCTTEEEEECCTTCCHHHHH
T ss_pred HHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccc----------cCCcEEEEeCCCCCCHHHHH
Confidence 7777776432 44 8899999999999999999986 5555544321 122356777753 26666
Q ss_pred HHHHhh-CeeeeCCCCCCCCCCeEEEEecC--ChHH-HHHHHHHHHHHHhch
Q 018172 304 KLLRAE-RIMARGGRRFGADAKYARVSMLS--REEI-FNIFLERLSAIQGGS 351 (360)
Q Consensus 304 ~~l~~~-gI~~~pg~~f~~~~~~~R~s~~~--~~e~-~~~~~~~l~~~~~~~ 351 (360)
+.|.++ ||.+++|.... .++++|+++.. ++++ +++++++|++++++.
T Consensus 340 ~~L~~~~gi~v~~g~~~~-~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 340 DMLLAQFGIEIASSFGPL-AGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp HHHHHHHCEECBCCCSTT-TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCEEEecCCCCC-CCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 666665 99999987433 46799999933 5555 999999999999764
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=237.08 Aligned_cols=278 Identities=11% Similarity=0.057 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc--CCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS--SPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~--~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
+++|++++++++. +++|++|+|++ ++..++..+. .+||. |+++.|+|..+...++..|++++.++.
T Consensus 94 ~~l~~~la~~~~~-------~~~i~~~sG~~-a~~~~~~~l~~~~~gd~----Vl~~~~~~~~~~~~~~~~g~~~~~v~~ 161 (401)
T 2bwn_A 94 RRLEAEIAGLHQK-------EAALVFSSAYN-ANDATLSTLRVLFPGLI----IYSDSLNHASMIEGIKRNAGPKRIFRH 161 (401)
T ss_dssp HHHHHHHHHHTTC-------SEEEEESCHHH-HHHHHHHHHHHHSTTCE----EEEETTCCHHHHHHHHHSCCCEEEECT
T ss_pred HHHHHHHHHHhCC-------CcEEEECCcHH-HHHHHHHHHhcCCCCCE----EEECchhhHHHHHHHHHcCCeEEEEcC
Confidence 8999999999873 46899988876 6666666553 57887 999999999999999999999999987
Q ss_pred C-cccccc-----C-CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC----cCC---CC-CCccE
Q 018172 117 D-ANTFDK-----N-NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT----PIT---GA-ADHDI 180 (360)
Q Consensus 117 ~-~~~~~~-----~-~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~----~~~---~~-~~~~i 180 (360)
+ .+.++. + +++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+.+. ... +. .+.++
T Consensus 162 ~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i 241 (401)
T 2bwn_A 162 NDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDI 241 (401)
T ss_dssp TCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSE
T ss_pred CCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcE
Confidence 5 222221 1 57899999999999999998 67888899999999999999843221 111 11 13478
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh--ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL--GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
+++|+||+++++| ||+++ ++++++.+...... ...+.+++.+.++.++++.+.. ..+++.+++++++++++
T Consensus 242 ~~~s~sK~~~~~G---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~~~l 314 (401)
T 2bwn_A 242 FNGTLAKAYGVFG---GYIAA-SARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKT---AEGQKLRDAQQMHAKVL 314 (401)
T ss_dssp EEEESSSTTCSCC---EEEEE-CHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH
T ss_pred EEeechhhccCCC---CEEec-CHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHH
Confidence 9999999999888 99998 88888888754321 2234556777777777775432 34688899999999999
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHH-HhhCeeeeCCCCCCCC--CCeEEEEecC
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLL-RAERIMARGGRRFGAD--AKYARVSMLS 332 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l-~~~gI~~~pg~~f~~~--~~~~R~s~~~ 332 (360)
.+.|+++ ++.+..+. ++++|+.+++. ..+.+.| +++||.++|+..|+.. .+++|++++.
T Consensus 315 ~~~L~~~-g~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~ 379 (401)
T 2bwn_A 315 KMRLKAL-GMPIIDHG--------------SHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSP 379 (401)
T ss_dssp HHHHHHH-TCCBCCCS--------------SSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCT
T ss_pred HHHHHHC-CCcccCCC--------------CCeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeC
Confidence 9999987 55544332 23678888752 5566666 5889999999877642 3589999974
Q ss_pred --ChHHHHHHHHHHHHHHhc
Q 018172 333 --REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 333 --~~e~~~~~~~~l~~~~~~ 350 (360)
+++++++++++|++++++
T Consensus 380 ~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 380 VHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp TSCHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 899999999999998754
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-30 Score=238.57 Aligned_cols=275 Identities=15% Similarity=0.063 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCC-------------CCCCCceEEEeCCCCCCcHHHHH
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSP-------------GGPEPISVVSAAPYYSQYPAETD 105 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~-------------gd~~~~~vl~~~p~~~~~~~~~~ 105 (360)
.++++.++++++. ++++|++|+|+++++..++..+.++ ||+ |+++.|+|..+...++
T Consensus 72 ~~l~~~la~~~~~------~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~----vl~~~~~~~~~~~~~~ 141 (397)
T 3f9t_A 72 EKAVALLGSLLNN------KDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPK----IIVPITAHFSFEKGRE 141 (397)
T ss_dssp HHHHHHHHHHTTC------TTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCE----EEEETTCCTHHHHHHH
T ss_pred HHHHHHHHHHhCC------CCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeE----EEECCcchhHHHHHHH
Confidence 4566677777764 4568999999999999999998765 777 9999999999999999
Q ss_pred HhCCeeeeecCCccc-ccc-------CC-CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC-----
Q 018172 106 YLRSGLYKWDGDANT-FDK-------NN-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT----- 170 (360)
Q Consensus 106 ~~g~~~~~~~~~~~~-~~~-------~~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~----- 170 (360)
..|++++.++.+.+. ++. ++ +++++++++|+||||.+.+ +.+.++|+++|+++|+|++|......
T Consensus 142 ~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~ 221 (397)
T 3f9t_A 142 MMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDK 221 (397)
T ss_dssp HHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGG
T ss_pred HcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccc
Confidence 999999999876432 221 24 7899999999999999988 67888899999999999999842211
Q ss_pred --------c-CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccc-----------cCChHHHHHHH
Q 018172 171 --------P-ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI-----------GVSKESQLRAA 230 (360)
Q Consensus 171 --------~-~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~ 230 (360)
+ .... +.++++.|++|.++ +|.|+|+++++++.+.+.+......... +.+...+.++.
T Consensus 222 ~~~~~~~~~~~~~~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 299 (397)
T 3f9t_A 222 YKKKGVNYKFDFSL-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVL 299 (397)
T ss_dssp GCCTTCCCCCSGGG-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHH
T ss_pred cccccccccccccc-cCCeEEEccccccC-CCCCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHH
Confidence 1 1123 67899999999776 7789999998666665554322211111 12344555554
Q ss_pred HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhC
Q 018172 231 KILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAER 310 (360)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 310 (360)
..+. ...+++..++++++++++.+.|+++ ++.+..+. .++++++..++...+.+.|.++|
T Consensus 300 ~~~~------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~g 359 (397)
T 3f9t_A 300 RYLG------REGQRKIVNECMENTLYLYKKLKEN-NFKPVIEP-------------ILNIVAIEDEDYKEVCKKLRDRG 359 (397)
T ss_dssp HHHH------HHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCC-------------SSSEEEEECTTHHHHHHHHHHTT
T ss_pred HHHh------HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCC-------------CccEEEEEeCCHHHHHHHHHhCC
Confidence 4443 2677888899999999999999998 45433332 23467888776677788888889
Q ss_pred eeeeCCCCCCCCCCeEEEEecC--ChHHHHHHHHHHHHHHh
Q 018172 311 IMARGGRRFGADAKYARVSMLS--REEIFNIFLERLSAIQG 349 (360)
Q Consensus 311 I~~~pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~ 349 (360)
|.+++|.. ++++|+++.. ++|++++++++|++++.
T Consensus 360 i~v~~~~~----~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 360 IYVSVCNC----VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CBCEECSS----SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred eEEeccCC----CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 99999762 5799999974 89999999999999875
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=232.17 Aligned_cols=282 Identities=12% Similarity=0.126 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC-cHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ-YPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~-~~~~~~~~g~~~~~~~~~ 117 (360)
.++++.++++++. ..+++|++|+|++++++.++.++.++ +. +++..+.|.. +...++..|++++.++.+
T Consensus 46 ~~~~~~la~~~g~-----~~~~~v~~~~g~t~al~~~~~~l~~~-~~----i~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 115 (362)
T 3ffr_A 46 KTASDNLKTLLEL-----PSNYEVLFLASATEIWERIIQNCVEK-KS----FHCVNGSFSKRFYEFAGELGREAYKEEAA 115 (362)
T ss_dssp HHHHHHHHHHTTC-----CTTEEEEEESCHHHHHHHHHHHHCSS-EE----EEEECSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHhCC-----CCCcEEEEeCCchHHHHHHHHhccCC-cE----EEEcCcHHHHHHHHHHHHhCCCeEEEecC
Confidence 6677777777764 13468999999999999999999877 43 5566666662 334677789999988764
Q ss_pred c------cccccCCCeeEEEEcCCCCCCcccch-HHHHHHhhhc-CcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 118 A------NTFDKNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSA-EGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 118 ~------~~~~~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~-~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
. +.++.++++++|++++||||||.+++ +.+.++|+++ |+++|+|++|..+..+.... ..+++++|+||.+
T Consensus 116 ~~~~~d~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~--~~d~~~~s~~K~~ 193 (362)
T 3ffr_A 116 FGKGFYPADITVPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWT--KIDSVFFSVQKCF 193 (362)
T ss_dssp TTCCCCGGGCCCCTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTT--SCSEEEEETTSTT
T ss_pred CCCCCCHHHHhccCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChh--HCcEEEEeccccc
Confidence 3 33334578999999999999999999 6777889999 99999999998654322111 2679999999999
Q ss_pred C-CCCceEEEEeecCHHHHHHHHHHHh---------------------hccccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 190 G-HAGSRIGWALVKDTEVARKMTRFIE---------------------LGSIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 190 ~-~~G~r~G~~~~~~~~~~~~l~~~~~---------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
+ ++| +|++++ ++++++.+..... ....+.+...+.++.++++.+.. ..+++.
T Consensus 194 ~~~~G--~g~~~~-~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~---~~~~~~ 267 (362)
T 3ffr_A 194 GLPAG--LGVWIL-NDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQ---ISADGI 267 (362)
T ss_dssp CCCSC--CEEEEE-EHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH---HCHHHH
T ss_pred CCCCc--eEEEEE-CHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHH---ccHHHH
Confidence 8 777 577777 7888888876543 11455677777777777764322 337889
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-hHHHHHHHHhhCeeeeCCCCCCCCCCeE
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-DEDCEKLLRAERIMARGGRRFGADAKYA 326 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gI~~~pg~~f~~~~~~~ 326 (360)
+++++++++++.+.|++++++.+..+.... ....++|+.+++ ...+.+.|.++||.+++|..+. .++++
T Consensus 268 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~-~~~~i 337 (362)
T 3ffr_A 268 RKQTEEKAALINTYIESSKVFSFGVEDAKL---------RSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSK-KETQI 337 (362)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEESSSCGGG---------BCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGG-TTTEE
T ss_pred HHHHHHHHHHHHHHHHHccCceeccCChhh---------cCCceEEEecCCCHHHHHHHHHHCCeEEecCcccc-CCCEE
Confidence 999999999999999999777665533221 112256666664 4777888888899999986543 36799
Q ss_pred EEEecC--ChHHHHHHHHHHHHHH
Q 018172 327 RVSMLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 327 R~s~~~--~~e~~~~~~~~l~~~~ 348 (360)
|+|+.. ++|++++++++|++++
T Consensus 338 Ris~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 338 RIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 999865 8999999999999875
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=239.34 Aligned_cols=281 Identities=12% Similarity=0.088 Sum_probs=214.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC-
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG- 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~- 116 (360)
..+|++.++++++. + +.++++++++++..++..++++||. |+++.|+|..+...++..|.+++.++.
T Consensus 111 ~~~l~~~la~~~g~-------~-~~i~~~sGs~a~~~al~~l~~~gd~----vl~~~~~h~~~~~~~~~~g~~~~~~~~~ 178 (427)
T 2w8t_A 111 HMEVEQALRDFYGT-------T-GAIVFSTGYMANLGIISTLAGKGEY----VILDADSHASIYDGCQQGNAEIVRFRHN 178 (427)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHHSCTTCE----EEEETTCCHHHHHHHHHSCSEEEEECTT
T ss_pred HHHHHHHHHHHhCC-------C-ceEEecCcHHHHHHHHHHhcCCCCE----EEECCcccHHHHHHHHHcCCeeEEeCCC
Confidence 38999999999974 3 3455555677888899999999998 999999999999999999999998873
Q ss_pred Ccccccc---C--C-CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCc----C---CC-CCCccEE
Q 018172 117 DANTFDK---N--N-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTP----I---TG-AADHDIM 181 (360)
Q Consensus 117 ~~~~~~~---~--~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~----~---~~-~~~~~i~ 181 (360)
|.+.++. . + ++++|++++++||||.+++ +.+.++|+++|+++|+||+|..+.+.. . .+ ..+.+++
T Consensus 179 d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~ 258 (427)
T 2w8t_A 179 SVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFV 258 (427)
T ss_dssp CHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEE
T ss_pred CHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEE
Confidence 3333322 1 1 7899999999999999998 778889999999999999999643321 1 12 2356899
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHH-h-hccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHH
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI-E-LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLR 259 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (360)
+.||||.+|++| ||+++ ++++++.+.... . ..+.+.++..+.++.++++.+. .+++.+++++++++++.
T Consensus 259 ~~s~sK~~g~~g---G~v~~-~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~-----~~~~~~~~~~~~~~~l~ 329 (427)
T 2w8t_A 259 VGTFSKSVGTVG---GFVVS-NHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM-----TAHEKRERLWSNARALH 329 (427)
T ss_dssp EEESSSTTCSCC---EEEEE-CCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHT-----SCHHHHHHHHHHHHHHH
T ss_pred EecchhhhccCC---CEEEe-CHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHH
Confidence 999999999777 99998 778888776541 1 2244566666666667777432 25678899999999999
Q ss_pred HHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEecC--
Q 018172 260 QVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGA--DAKYARVSMLS-- 332 (360)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~~-- 332 (360)
+.|+++ ++.+..+. ..++++|+.+++. ..+.+.|.++||.+.||..|+. ..+++|++++.
T Consensus 330 ~~L~~~-g~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~ 396 (427)
T 2w8t_A 330 GGLKAM-GFRLGTET------------CDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEH 396 (427)
T ss_dssp HHHHHH-TCEESCSS------------CCSSEEEEEESSHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTC
T ss_pred HHHHHc-CCcccCCC------------CCCCEEEEEECCHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCC
Confidence 999987 44433111 1334778888753 6677778888999999987764 24689999976
Q ss_pred ChHHHHHHHHHHHHHHhchh
Q 018172 333 REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 333 ~~e~~~~~~~~l~~~~~~~~ 352 (360)
+++++++++++|++++++..
T Consensus 397 t~e~i~~~~~~l~~~l~~~~ 416 (427)
T 2w8t_A 397 TPAQIQTVLGMFQAAGRAVG 416 (427)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999987653
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=241.68 Aligned_cols=283 Identities=13% Similarity=0.077 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc----CCCC-CCCceEEEeCCCCCCcHHHHHH---hCCe
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS----SPGG-PEPISVVSAAPYYSQYPAETDY---LRSG 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~----~~gd-~~~~~vl~~~p~~~~~~~~~~~---~g~~ 110 (360)
.++|+.++++++. ++++|++|+|+++++..++..+. ++|| . |+++.++|+.+...+.. .|++
T Consensus 66 ~~l~~~la~~~~~------~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~----Vl~~~~~~~~~~~~~~~~~~~g~~ 135 (400)
T 3vax_A 66 ERAREYLASTVSA------EPDELIFTSGATESNNIALLGLAPYGERTGRRH----IITSAIEHKAVLEPLEHLAGRGFE 135 (400)
T ss_dssp HHHHHHHHHHTTC------CGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCE----EEEETTSCHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHcCC------CCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCE----EEECccccHhHHHHHHHHHhcCCe
Confidence 7888889998885 45689999999999999999998 8899 8 99999999988766655 5999
Q ss_pred eeeecCCccc------ccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEE
Q 018172 111 LYKWDGDANT------FDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181 (360)
Q Consensus 111 ~~~~~~~~~~------~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~ 181 (360)
++.++.+.++ +.. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|+.+......... .+++
T Consensus 136 ~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~ 214 (400)
T 3vax_A 136 VDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMI 214 (400)
T ss_dssp EEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEE
T ss_pred EEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEE
Confidence 9999876432 221 468999999999999999988 77888999999999999999865433322333 7899
Q ss_pred EeccccccCCCCceEEEEe-ecCHHHH---HHHHHHH-------hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHH
Q 018172 182 LFTLSKCTGHAGSRIGWAL-VKDTEVA---RKMTRFI-------ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRL 250 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~-~~~~~~~---~~l~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (360)
+.|+||.+|++| +|+++ +.++++. ..+.... .....+.+...+.++.++++.+. .++++.+++
T Consensus 215 ~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----~~~~~~~~~ 288 (400)
T 3vax_A 215 SISGHKIGAPKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFE----AEHAQWQVA 288 (400)
T ss_dssp EEETGGGTSCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH----HSHHHHHHH
T ss_pred EEeHHHhCCCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHH----hhHHHHHHH
Confidence 999999888666 56666 6442111 1111111 22344566777777766666432 567899999
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCCCCC-------
Q 018172 251 MSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRRFGA------- 321 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~f~~------- 321 (360)
++++++++.+.|+ .+++.+..+.+. ..++++++.+++ .+.+.+.|. +||.+++|..|..
T Consensus 289 ~~~~~~~l~~~L~-~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~ 356 (400)
T 3vax_A 289 AQDLRSRLLAGLA-STSFQVNGDQDH----------VVPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASFTPSH 356 (400)
T ss_dssp HHHHHHHHHHHHT-TTTCEECSCTTS----------BCTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHH
T ss_pred HHHHHHHHHHhhC-CCCEEEeCCccc----------CCCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCCCCCccH
Confidence 9999999999999 766666554432 112355555553 377788888 9999999875532
Q ss_pred -------C----CCeEEEEe-cC--ChHHHHHHHHHHHHHHhc
Q 018172 322 -------D----AKYARVSM-LS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 322 -------~----~~~~R~s~-~~--~~e~~~~~~~~l~~~~~~ 350 (360)
. .+++||++ .. ++|++++++++|++++++
T Consensus 357 ~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 357 VLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp HHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred HHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 1 48999999 64 789999999999988753
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=229.81 Aligned_cols=291 Identities=10% Similarity=0.041 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc---CCCCCCCceEEEe-CCCCCCc-HHHHHHhCCeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS---SPGGPEPISVVSA-APYYSQY-PAETDYLRSGLYK 113 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~---~~gd~~~~~vl~~-~p~~~~~-~~~~~~~g~~~~~ 113 (360)
.++|+.++++++.. ..++ +++|++|+|+++++..++..+. ++||+ |+++ .|.|... ...++..|++++.
T Consensus 41 ~~~~~~l~~~~~~~-~~~~-~~~v~~~~g~t~al~~~~~~~~~~~~~gd~----vlv~~~~~~~~~~~~~~~~~g~~~~~ 114 (385)
T 2bkw_A 41 QRVLKNTRAVFKSA-AASK-SQPFVLAGSGTLGWDIFASNFILSKAPNKN----VLVVSTGTFSDRFADCLRSYGAQVDV 114 (385)
T ss_dssp HHHHHHHHHHTTCC-GGGT-CEEEEEESCTTHHHHHHHHHHSCTTCSCCE----EEEECSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCCC-CCCC-CceEEEcCchHHHHHHHHHHHhccCCCCCe----EEEEcCCcchHHHHHHHHHcCCceEE
Confidence 78899999998752 1122 3589999999999999999997 88987 8887 5566665 3677888999999
Q ss_pred ecC-Cccc-ccc-------CC-CeeEEEEcCCCCCCcccch-HHHHHHhhhc--CcEEEEeecccCCCCCcCCCCCCccE
Q 018172 114 WDG-DANT-FDK-------NN-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSA--EGKLIHDLAYYWPQYTPITGAADHDI 180 (360)
Q Consensus 114 ~~~-~~~~-~~~-------~~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~--~~~li~D~ay~~~~~~~~~~~~~~~i 180 (360)
++. +.++ ++. ++ ++++|++++|+||||.+++ +.+.++|+++ |+++|+|++|..+..+......+.++
T Consensus 115 v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~ 194 (385)
T 2bkw_A 115 VRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDF 194 (385)
T ss_dssp ECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSE
T ss_pred EecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceE
Confidence 987 5332 221 23 7899999999999999988 6778888888 99999999998654322233456789
Q ss_pred EEecccccc-CCCCceEEEEeecCHHHHH-HHH------------------HH-Hhhc------cccCChHHHHHHHHHh
Q 018172 181 MLFTLSKCT-GHAGSRIGWALVKDTEVAR-KMT------------------RF-IELG------SIGVSKESQLRAAKIL 233 (360)
Q Consensus 181 ~~~S~sK~~-~~~G~r~G~~~~~~~~~~~-~l~------------------~~-~~~~------~~~~~~~~~~~~~~~l 233 (360)
++.|+||.+ +++| +||+++ ++++++ .+. .. .... ..+.+...+.++.+++
T Consensus 195 ~~~s~~K~~~~~~G--~G~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al 271 (385)
T 2bkw_A 195 ALTASQKAIGAPAG--LSISLC-SSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVAL 271 (385)
T ss_dssp EEEESSSTTCCCSC--EEEEEE-CHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHH
T ss_pred EEecCccccccCCc--ceEEEE-cHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHH
Confidence 999999965 4567 599998 777766 442 11 0111 1356677777777777
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHH-HhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCee
Q 018172 234 GIVSDDYPNFFEYGRRLMSERWNMLRQVI-RQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIM 312 (360)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~ 312 (360)
+.+.. ..+++.+++++++++++.+.| +++ ++.+..+.+..+ ..++++|+.+++...+.+.|.++||.
T Consensus 272 ~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~gi~ 339 (385)
T 2bkw_A 272 KEILE---EGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNM--------SAHGLTAVYVADPPDVIAFLKSHGVV 339 (385)
T ss_dssp HHHHH---HCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTT--------BCSSCEEEECSCHHHHHHHHHHTTEE
T ss_pred HHHHH---ccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccc--------cCCceEEEecCCHHHHHHHHHHCCeE
Confidence 64321 237788899999999999999 887 455443321100 12447788887666677777889999
Q ss_pred eeCCCCCCCCCCeEEEE-ec-----CChHHHHHHHHHHHHHHhc
Q 018172 313 ARGGRRFGADAKYARVS-ML-----SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 313 ~~pg~~f~~~~~~~R~s-~~-----~~~e~~~~~~~~l~~~~~~ 350 (360)
+++|..+....+++|+| ++ .++|++++++++|++++++
T Consensus 340 v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 340 IAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp CBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred EeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 99988665456799999 75 3899999999999998865
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=231.98 Aligned_cols=288 Identities=13% Similarity=0.089 Sum_probs=205.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH----HHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET----DYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~~~~ 113 (360)
..++|+.++++++. + +.++++++++++..++..++++||+ |+++.|+|.++...+ +..|.+++.
T Consensus 66 ~~~l~~~la~~~g~-------~-~~i~~~sG~~a~~~~l~~~~~~gd~----vi~~~~~~~~~~~~~~~~~~~~g~~~~~ 133 (398)
T 2rfv_A 66 TDALEKKLAVLERG-------E-AGLATASGISAITTTLLTLCQQGDH----IVSASAIYGCTHAFLSHSMPKFGINVRF 133 (398)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESSHHHHHHHHHHHHCCTTCE----EEEESSSCHHHHHHHHTHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCC-------C-cEEEECCHHHHHHHHHHHHhCCCCE----EEEcCCCcccHHHHHHHHHHHcCCEEEE
Confidence 38999999999984 3 4555555669999999999999998 999999999988776 778999999
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+.... ....+.++++.|+||.+
T Consensus 134 v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-~~~~~~di~~~s~sK~~ 212 (398)
T 2rfv_A 134 VDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ-PLQLGADIVVHSVTKYI 212 (398)
T ss_dssp ECTTSHHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-GGGGTCSEEEEETTTTT
T ss_pred eCCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-chhhCCcEEEEeCcccc
Confidence 8864 334432 467999999999999999998 678888999999999999998654322 12346899999999999
Q ss_pred CCCCceE-EEEeecCHHHHH-HHHHHHhhc-cccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 190 GHAGSRI-GWALVKDTEVAR-KMTRFIELG-SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 190 ~~~G~r~-G~~~~~~~~~~~-~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
+.+|+|+ ||+++ ++++++ .+....... +.+.+++.+.++.++++.+ ....+.+.++.+.+.+.|++++
T Consensus 213 ~~~g~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~l~~~l~~~~ 283 (398)
T 2rfv_A 213 NGHGDVIGGIIVG-KQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTL--------GIRMERHCENALKIARFLEGHP 283 (398)
T ss_dssp TCSSCCCCEEEEE-CHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTH--------HHHHHHHHHHHHHHHHHHHTCT
T ss_pred cCCCCceEEEEEE-CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHHHHcCC
Confidence 8899998 99998 788776 666555544 5678888898888877621 2223445666777777887754
Q ss_pred CcccCCCCCc----ccccccccCCCCCCcccccCCch-HHHHHHHHhh---CeeeeCCCCCC------------------
Q 018172 267 VFGLPEYPLE----YCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAE---RIMARGGRRFG------------------ 320 (360)
Q Consensus 267 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~---gI~~~pg~~f~------------------ 320 (360)
.+.....++. .+.+......+.++++++++++. .....++.+. |+.+.+|..|.
T Consensus 284 ~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~ 363 (398)
T 2rfv_A 284 SITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEER 363 (398)
T ss_dssp TEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHH
T ss_pred CeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHH
Confidence 2211100000 00000000123566778888753 3444444444 88888886542
Q ss_pred ----CCCCeEEEEecC--ChHHHHHHHHHHHHH
Q 018172 321 ----ADAKYARVSMLS--REEIFNIFLERLSAI 347 (360)
Q Consensus 321 ----~~~~~~R~s~~~--~~e~~~~~~~~l~~~ 347 (360)
..++++|||++. ++++++++.++|+++
T Consensus 364 ~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 364 LKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp HHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 236899999977 678888888887654
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=234.53 Aligned_cols=287 Identities=12% Similarity=0.072 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~~ 114 (360)
.++++.++++++. + ++++++|+++++..++. ++++||+ |+++.|+|..+... ++..|++++.+
T Consensus 136 ~~l~~~la~~~g~-------~-~~i~~~sGt~al~~~l~-~~~~Gd~----Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v 202 (464)
T 1ibj_A 136 DALESLLAKLDKA-------D-RAFCFTSGMAALSAVTH-LIKNGEE----IVAGDDVYGGSDRLLSQVVPRSGVVVKRV 202 (464)
T ss_dssp HHHHHHHHHHHTC-------S-EEEEESSHHHHHHHHHT-TSCTTCE----EEEESSCCHHHHHHHHHTSGGGTCEEEEE
T ss_pred HHHHHHHHHHhCC-------C-eEEEECCHHHHHHHHHH-HhCCCCE----EEEECCCchhHHHHHHHHHHHcCCEEEEe
Confidence 4555666666652 3 67777777899988875 7889998 99999999998764 46679999998
Q ss_pred cCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-CcCCCCCCccEEEecccccc
Q 018172 115 DGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-TPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 115 ~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-~~~~~~~~~~i~~~S~sK~~ 189 (360)
+.+ .+.++. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+.. .++ ..++++++.|+||.+
T Consensus 203 ~~~d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~--~~~~div~~S~sK~~ 280 (464)
T 1ibj_A 203 NTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL--ELGADIVMHSATKFI 280 (464)
T ss_dssp CTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGG--GTTCSEEEEETTTTT
T ss_pred CCCCHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChh--hcCCEEEEECCcccc
Confidence 864 344433 468999999999999999998 6788889999999999999986532 122 257899999999988
Q ss_pred CC-CCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 GH-AGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~~-~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+. .|+|+||++++++++++.+.......+.+.+++.|.++.+.++.+. ..+++.. ++.+.+.+.+++++.+
T Consensus 281 ~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~~----~r~~~~~----~~~~~l~~~l~~~~~v 352 (464)
T 1ibj_A 281 AGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA----LRIEKQQ----ENARKIAMYLSSHPRV 352 (464)
T ss_dssp TCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHH----HHHHHHH----HHHHHHHHHHHTCTTC
T ss_pred cCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHH----HHHHHHH----HHHHHHHHHHHhCCCc
Confidence 64 4999999999557898988877765567788888888877776221 2233222 2233344455443211
Q ss_pred ccCCCCC--c--ccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCC------------C----------C
Q 018172 269 GLPEYPL--E--YCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGR------------R----------F 319 (360)
Q Consensus 269 ~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~------------~----------f 319 (360)
.-.-..+ . .+.+......+.++++++.+++. ..+.+.|+..||.+++|. . +
T Consensus 353 ~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~ 432 (464)
T 1ibj_A 353 KKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREAR 432 (464)
T ss_dssp CEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSS
T ss_pred eEEECCCCCCCcchHHHhccCCCCceEEEEEECCHHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhc
Confidence 0000000 0 00000001113456888888643 345566666899998885 1 1
Q ss_pred CCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 320 GADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 320 ~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
|..++++|+|++. |++++++++|++++++
T Consensus 433 g~~~~~iRlsvg~--edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 433 GLTEDLVRISAGI--EDVDDLISDLDIAFKT 461 (464)
T ss_dssp SCCTTCEEEECCS--SCHHHHHHHHHHHHHS
T ss_pred CCCcCeEEEEeCC--CCHHHHHHHHHHHHhh
Confidence 2336799999976 8899999999999865
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=225.69 Aligned_cols=285 Identities=14% Similarity=0.138 Sum_probs=204.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH----HHhCCeeeeec
Q 018172 40 ELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET----DYLRSGLYKWD 115 (360)
Q Consensus 40 ~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~~~~~~ 115 (360)
+||++++++++. + +.+++++| ++++..++..++++||+ |+++.|+|..+...+ +..|.+++.++
T Consensus 2 ~l~~~la~~~g~------~-~~i~~~sG-~~a~~~~~~~~~~~g~~----v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 69 (331)
T 1pff_A 2 ALEGKIAKLEHA------E-ACAATASG-MGAIAASVWTFLKAGDH----LISDDCLYGCTHALFEHQLRKFGVEVDFID 69 (331)
T ss_dssp HHHHHHHHHHTC------S-EEEEESSH-HHHHHHHHHHHCCTTCE----EEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred hHHHHHHHHhCC------C-eEEEeCCh-HHHHHHHHHHhcCCCCE----EEEcCCCcchHHHHHHHHHHhcCCEEEEeC
Confidence 689999999985 3 45666665 89999999999999998 999999999987765 44799998887
Q ss_pred C-Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhh-cCcEEEEeecccCCCC-CcCCCCCCccEEEecccccc
Q 018172 116 G-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRS-AEGKLIHDLAYYWPQY-TPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 116 ~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~-~~~~li~D~ay~~~~~-~~~~~~~~~~i~~~S~sK~~ 189 (360)
. |.+.+.. ++++++|++++|+||||.+++ +.+.++|++ +|+++|+|++|..+.. .++ ..++++++.|+||.+
T Consensus 70 ~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~d~~~~s~~K~~ 147 (331)
T 1pff_A 70 MAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL--DLGVDIVVHSATKYI 147 (331)
T ss_dssp TTSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG--GGTCSEEEEETTTTT
T ss_pred CCCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh--hcCCcEEEEECcccc
Confidence 4 3444433 467899999999999999998 778899999 9999999999985322 122 356899999999999
Q ss_pred CCCCce-EEEEeecCH-HHHHHHHHHHhh-ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 190 GHAGSR-IGWALVKDT-EVARKMTRFIEL-GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 190 ~~~G~r-~G~~~~~~~-~~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
+.+|.| +||+++ ++ ++++.+...... .+.+.+++.+.++...++ .+....+...++.+.+.+.+++.+
T Consensus 148 ~~~~~r~~G~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~l~~~~ 218 (331)
T 1pff_A 148 NGHTDVVAGLVCS-RADIIAKVKSQGIKDITGAIISPHDAWLITRGTL--------TLDMRVKRAAENAQKVAEFLHEHK 218 (331)
T ss_dssp SSSSSCCCEEEEE-CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCceEEEEEe-CcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcc--------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999 799998 66 899888876654 456777888777655554 233334445556666666666553
Q ss_pred CcccCCCCC--c--ccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCC------------------------
Q 018172 267 VFGLPEYPL--E--YCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRR------------------------ 318 (360)
Q Consensus 267 ~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~------------------------ 318 (360)
.+.....++ . .+.+......+.++++.+.+++.+.+.+.|.++||.+++.+.
T Consensus 219 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~ 298 (331)
T 1pff_A 219 AVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEERE 298 (331)
T ss_dssp TCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHH
T ss_pred CeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHH
Confidence 211100000 0 000000011234567777777557888999999998876531
Q ss_pred -CCCCCCeEEEEecC--ChHHHHHHHHHHHHH
Q 018172 319 -FGADAKYARVSMLS--REEIFNIFLERLSAI 347 (360)
Q Consensus 319 -f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~ 347 (360)
++..++++|+|+.. +++++++++++|+++
T Consensus 299 ~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 299 AAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp HTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred hcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 22336899999977 678888888887653
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=230.13 Aligned_cols=266 Identities=11% Similarity=-0.005 Sum_probs=186.8
Q ss_pred CcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH---HHHHhCCeeeeecCCcccccc-CCCeeE-EEEcC
Q 018172 60 RHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA---ETDYLRSGLYKWDGDANTFDK-NNGAYI-EVVNS 134 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~-~~~~~~-i~~~~ 134 (360)
+++++|+|+++++..++..+ +||+ |+++.|+|+.+.. .++..|++++.+ .|.+.+.. ++++++ |++++
T Consensus 77 ~~~~~~~ggt~a~~~~~~~~--~gd~----Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-~d~~~l~~~~~~~~~~v~~~~ 149 (374)
T 2aeu_A 77 DKCVGFNRTSSAILATILAL--KPKK----VIHYLPELPGHPSIERSCKIVNAKYFES-DKVGEILNKIDKDTLVIITGS 149 (374)
T ss_dssp EEEEEESSHHHHHHHHHHHH--CCSE----EEEECSSSSCCTHHHHHHHHTTCEEEEE-SCHHHHHTTCCTTEEEEEECB
T ss_pred ceEEEEcChHHHHHHHHHhC--CCCE----EEEecCCCCccHHHHHHHHHcCcEEEEe-CCHHHHHhcCCCccEEEEEcc
Confidence 58999999999999999988 8998 9999999887655 677789999888 66554433 457899 99999
Q ss_pred CCCCCc-ccch-HHHHHHhhhcCcEEEEeecccCCC----CCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHH
Q 018172 135 PNNPDG-TIRE-AVLAKVNRSAEGKLIHDLAYYWPQ----YTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVAR 208 (360)
Q Consensus 135 p~NPtG-~~~~-~~~~~~~~~~~~~li~D~ay~~~~----~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~ 208 (360)
|||||| ...+ +.+.++|+++|+++|+|++|.... ........+.+++++|+||.+ +|+|+||+++ ++++++
T Consensus 150 p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l--~g~~~G~~~~-~~~~~~ 226 (374)
T 2aeu_A 150 TMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLM--EGPRGGLLAG-KKELVD 226 (374)
T ss_dssp CTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSS--SSCSCEEEEE-EHHHHH
T ss_pred CCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccc--cCcceEEEEE-CHHHHH
Confidence 999999 4444 577788888999999999997431 110011235689999999985 5789999998 789999
Q ss_pred HHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHH----HHHHHHHHHhc---CCccc-CCCCCccccc
Q 018172 209 KMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSER----WNMLRQVIRQS---GVFGL-PEYPLEYCNF 280 (360)
Q Consensus 209 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~---~~~~~-~~~~~~~~~~ 280 (360)
.+.......+.+.+++.|.++.++++.+. ...+++..+..+.. ++.+.+.|..+ .++.+ ..+.+.+
T Consensus 227 ~l~~~~~~~~~~~~~~~~~a~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~--- 300 (374)
T 2aeu_A 227 KIYIEGTKFGLEAQPPLLAGIYRALKNFN---LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFV--- 300 (374)
T ss_dssp HHHHHHHTTTCBCCHHHHHHHHHHHHHCC---HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEE---
T ss_pred HHHHhhccccCCCCHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEE---
Confidence 99887765556788899988888887431 11222222222222 45555555543 12222 2233322
Q ss_pred ccccCCCCCCcccccCCch-------HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-C--hHHHHHHHHHHHHHHhc
Q 018172 281 TGKFTNSHPGFAWLESKED-------EDCEKLLRAERIMARGGRRFGADAKYARVSMLS-R--EEIFNIFLERLSAIQGG 350 (360)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~--~e~~~~~~~~l~~~~~~ 350 (360)
|.|.+.++. +.+.++++++||.++||..|....+++||+++. + +++++++.+++++.+.+
T Consensus 301 ----------~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~ 370 (374)
T 2aeu_A 301 ----------IKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKM 370 (374)
T ss_dssp ----------EEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred ----------EEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHH
Confidence 344444332 145577888999999998775456799999965 2 23478888888887765
Q ss_pred h
Q 018172 351 S 351 (360)
Q Consensus 351 ~ 351 (360)
.
T Consensus 371 ~ 371 (374)
T 2aeu_A 371 A 371 (374)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=231.42 Aligned_cols=284 Identities=13% Similarity=0.062 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc------CCCCCCCceEEEeCCCCCCcHHHH----HHh-
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS------SPGGPEPISVVSAAPYYSQYPAET----DYL- 107 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~------~~gd~~~~~vl~~~p~~~~~~~~~----~~~- 107 (360)
.++|+.++++++. ++++|++|+|+++++..++..++ ++||+ .|+++.++|+.+...+ +..
T Consensus 74 ~~l~~~la~~~g~------~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~---vii~~~~~~~~~~~~~~~~~~~~~ 144 (416)
T 1qz9_A 74 ERLGNRLATLIGA------RDGEVVVTDTTSINLFKVLSAALRVQATRSPERR---VIVTETSNFPTDLYIAEGLADMLQ 144 (416)
T ss_dssp HHHHHHHHTTTTC------CTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCC---EEEEETTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCC------CcccEEEeCChhHHHHHHHHhhcccccccCCCCc---EEEEcCCCCCchHHHHHHHHHHhc
Confidence 7899999998875 44689999999999998888876 88886 2455556887655443 234
Q ss_pred -CCeeeeecCCcccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEe
Q 018172 108 -RSGLYKWDGDANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLF 183 (360)
Q Consensus 108 -g~~~~~~~~~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~ 183 (360)
|++++.++. .+.++. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+.........+.++++.
T Consensus 145 ~g~~~~~v~~-~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~ 223 (416)
T 1qz9_A 145 QGYTLRLVDS-PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIG 223 (416)
T ss_dssp SSCEEEEESS-GGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEE
T ss_pred CCceEEEeCc-HHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEe
Confidence 999998876 444433 467899999999999999988 678888998999999999998643321112234689999
Q ss_pred ccccccCCCCceE-EEEeecCHHHHHHHHHHH-----------------------hhccccCChHHHHHHHHHhcccCCC
Q 018172 184 TLSKCTGHAGSRI-GWALVKDTEVARKMTRFI-----------------------ELGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 184 S~sK~~~~~G~r~-G~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
|+||.++ +|.++ |++++ ++++++.+.... .....+.+...+.++.++++.+..
T Consensus 224 s~~K~l~-~g~~~~g~l~~-~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~- 300 (416)
T 1qz9_A 224 CTYKYLN-GGPGSQAFVWV-SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQ- 300 (416)
T ss_dssp CSSSTTC-CCTTCCCEEEE-CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTT-
T ss_pred cCcccCC-CCCCCeEEEEE-CHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHh-
Confidence 9999875 67778 99998 677766554321 112234667777777777765432
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhc-C--CcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCC
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQS-G--VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGG 316 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg 316 (360)
..+++.+++++++++++.+.|+++ + ++.+..+.+.. ..++++|+.+++...+.+.|.++||.+...
T Consensus 301 --~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~l~~~gi~~~~~ 369 (416)
T 1qz9_A 301 --TDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHA---------KRGSHVSFEHPEGYAVIQALIDRGVIGDYR 369 (416)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGG---------GBCSEEEEECTTHHHHHHHHHTTTEECEEE
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHH---------HcCCEEEEecCCHHHHHHHHHhCCcEeccC
Confidence 457889999999999999999886 4 55554443210 123467888876677778888899997531
Q ss_pred CCCCCCCCeEEEEecC---ChHHHHHHHHHHHHHHhch
Q 018172 317 RRFGADAKYARVSMLS---REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 317 ~~f~~~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~ 351 (360)
..+++|+++.. +++++++++++|++++++.
T Consensus 370 -----~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 370 -----EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp -----TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -----CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 36799999962 9999999999999998753
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=224.48 Aligned_cols=288 Identities=13% Similarity=0.125 Sum_probs=206.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~ 113 (360)
..++|++++++++. + +.|++++| ++++..++..++++||+ |+++.|+|.+.... ++..|.+++.
T Consensus 54 ~~~l~~~la~~~~~------~-~~i~~~sG-t~a~~~~~~~~~~~g~~----vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (386)
T 1cs1_A 54 RDVVQRALAELEGG------A-GAVLTNTG-MSAIHLVTTVFLKPGDL----LVAPHDCYGGSYRLFDSLAKRGCYRVLF 121 (386)
T ss_dssp HHHHHHHHHHHHTC------S-EEEEESSH-HHHHHHHHHHHCCTTCE----EEEETTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHHHHHhCC------C-cEEEeCCH-HHHHHHHHHHHhCCCCE----EEEecCCcHhHHHHHHHHHHhcCCEEEE
Confidence 38999999999985 3 56777666 99999999999999998 99999999975553 3667999998
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+..... ...+.++++.|+||.+
T Consensus 122 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~di~~~s~sK~~ 200 (386)
T 1cs1_A 122 VDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNP-LALGADLVLHSCTKYL 200 (386)
T ss_dssp ECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCG-GGGTCSEEEEETTTTT
T ss_pred eCCCCHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCc-cccCceEEEEcCcccc
Confidence 8763 333332 357899999999999999988 7788889999999999999986543221 2356889999999999
Q ss_pred CCCCceE-EEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 GHAGSRI-GWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~~~G~r~-G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+.+|.|+ ||++++++++++.+.......+.+.++..+.++.+.++ .+....+.+.++++.+.+.|++++.+
T Consensus 201 ~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~~~~l~~~l~~~~~l 272 (386)
T 1cs1_A 201 NGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR--------TLVPRMELAQRNAQAIVKYLQTQPLV 272 (386)
T ss_dssp TCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT--------THHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred cCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc--------HHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 9899887 99998556898998877665556678888777666554 24455666777888888888876543
Q ss_pred ccCCCCC--c--ccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCC------------------------
Q 018172 269 GLPEYPL--E--YCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRF------------------------ 319 (360)
Q Consensus 269 ~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f------------------------ 319 (360)
.....++ . .+.+......+.++++.+.+++. +.+.+.|.++||.+++.+ +
T Consensus 273 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~g~~~sl~~~~~~~~~~~~~~~~~~ 351 (386)
T 1cs1_A 273 KKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAES-LGGVESLISHAATMTHAGMAPEARA 351 (386)
T ss_dssp EEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSC-CCSSSCEEEEGGGTTTTTSCHHHHH
T ss_pred EEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHhCCcceEccc-CCCcceeeecccccccccCCHHHHH
Confidence 2110110 0 00000000123456777777654 778888889999987421 2
Q ss_pred --CCCCCeEEEEecC--ChHHHHHHHHHHHHH
Q 018172 320 --GADAKYARVSMLS--REEIFNIFLERLSAI 347 (360)
Q Consensus 320 --~~~~~~~R~s~~~--~~e~~~~~~~~l~~~ 347 (360)
|..++++|+|+.. ++++++.+.++|+++
T Consensus 352 ~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 352 AAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp HHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 2235899999976 456666666666554
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=230.77 Aligned_cols=278 Identities=11% Similarity=0.026 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCC-c-EEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc--HHHHHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGR-H-IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY--PAETDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~-~-i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~--~~~~~~~g~~~~~~ 114 (360)
+++|+.++++++. +++ + +++|+|++++++.++.+++++||+ |+++.+.+... ...++..| +++.+
T Consensus 52 ~~~~~~la~~~g~------~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~----vl~~~~~~~~~~~~~~~~~~g-~~~~v 120 (362)
T 2c0r_A 52 NEAQARLLALLGN------PTGYKVLFIQGGASTQFAMIPMNFLKEGQT----ANYVMTGSWASKALKEAKLIG-DTHVA 120 (362)
T ss_dssp HHHHHHHHHHTTC------CSSEEEEEESSHHHHHHHHHHHHHCCTTCE----EEEEECSHHHHHHHHHHHHHS-CEEEE
T ss_pred HHHHHHHHHHhCC------CCCcEEEEECCCchHHHHHHHHhcCCCCCe----EEEEecCcHhHHHHHHHHHhC-CeEEE
Confidence 6777777777775 432 5 578899999999999999999998 88876654432 35677789 98887
Q ss_pred cCCc---cc-------cccCCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEec
Q 018172 115 DGDA---NT-------FDKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFT 184 (360)
Q Consensus 115 ~~~~---~~-------~~~~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S 184 (360)
+.+. .+ +..++++++|++++|+||||..+++ +.++ +|+++++|++|..+..+.... +.++++.|
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~t~~v~~~~~~n~tG~~~~~-l~~i---~~~~vivD~a~~~~~~~~~~~--~~d~~~~s 194 (362)
T 2c0r_A 121 ASSEASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFKA-FPDT---GSVPLIGDMSSDILSRPFDLN--QFGLVYAG 194 (362)
T ss_dssp EECGGGTTCSCCCGGGCCCCTTEEEEEEESEETTTTEECSS-CCCC---TTSCEEEECTTTTTSSCCCGG--GCSEEEEE
T ss_pred ecccccccccCCCHHHcccCCCcCEEEEeCCcCccceeccc-cccc---CCCEEEEEChhhccCCccchh--HCcEEEEe
Confidence 7542 11 1225689999999999999997552 2222 799999999998654332112 23688999
Q ss_pred cccccCCCCceEEEEeecCHHHHHHHHHH------------HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHH
Q 018172 185 LSKCTGHAGSRIGWALVKDTEVARKMTRF------------IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMS 252 (360)
Q Consensus 185 ~sK~~~~~G~r~G~~~~~~~~~~~~l~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 252 (360)
+||.+|++| +||+++ ++++++.+.+. ......+.+.+.|.++.++++.+.+. ..+++.+++++
T Consensus 195 ~~K~~g~~G--~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~ 269 (362)
T 2c0r_A 195 AQKNLGPSG--VTVVIV-REDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEER--GGLEGVQQANR 269 (362)
T ss_dssp TTTTTCCSS--CEEEEE-EGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHT--THHHHHHHHHH
T ss_pred ccccccCcC--cEEEEE-cHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHh--CCHHHHHHHHH
Confidence 999999888 999998 66766555321 11234577888888888888754321 26899999999
Q ss_pred HHHHHHHHHHHhcCCc-ccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEE
Q 018172 253 ERWNMLRQVIRQSGVF-GLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARV 328 (360)
Q Consensus 253 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~ 328 (360)
++++++.+.|++++++ .+..+.. . ..+.++++.+++. ..+.+.|.++||.+.||..+ .+++|+
T Consensus 270 ~~~~~l~~~L~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~---~~~iRi 336 (362)
T 2c0r_A 270 KKASLIYDAIDQSGGFYRGCVDVD-S---------RSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRS---VGGLRA 336 (362)
T ss_dssp HHHHHHHHHHHTSTTSSEESSCGG-G---------BCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTT---TCSEEE
T ss_pred HHHHHHHHHHHHcCCccccCCChH-H---------cCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCC---CCEEEE
Confidence 9999999999998633 3322111 0 1122567777642 66777889999999988766 357999
Q ss_pred EecC--ChHHHHHHHHHHHHHHhch
Q 018172 329 SMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 329 s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
|++. ++|++++++++|++++++.
T Consensus 337 s~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 337 SIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9975 8999999999999988643
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-28 Score=227.72 Aligned_cols=275 Identities=17% Similarity=0.136 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC-C
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG-D 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~-~ 117 (360)
.++++.++++++. ++.+++ +++++++..++..++++||. |+++.|+|..+...+...|++++.++. |
T Consensus 107 ~~l~~~la~~~g~-------~~~i~~-~sGt~a~~~~l~~~~~~gd~----Vl~~~~~~~~~~~~~~~~g~~~~~~~~~d 174 (409)
T 3kki_A 107 PMIEKRLAKFTGF-------DECLLS-QSGWNANVGLLQTICQPNTN----VYIDFFAHMSLWEGARYANAQAHPFMHNN 174 (409)
T ss_dssp CHHHHHHHHHHTC-------SEEEEE-SCHHHHHHHHHHHHCCTTCE----EEEETTSCHHHHHHHHHTTCEEEEECTTC
T ss_pred HHHHHHHHHHhCC-------CeEEEe-cchHHHHHHHHHHhcCCCCE----EEECCCcCHHHHHHHHHcCCeEEEecCCC
Confidence 7899999999884 334555 45579999999999999998 999999999999999999999998874 4
Q ss_pred cccccc---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCc----C---CC-CCCccEEEecc
Q 018172 118 ANTFDK---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTP----I---TG-AADHDIMLFTL 185 (360)
Q Consensus 118 ~~~~~~---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~----~---~~-~~~~~i~~~S~ 185 (360)
.+.++. +.++++|++++|+||||.+++ +.+.++|+++|+++|+||+|.++.+.. . .+ ..+.++++.|+
T Consensus 175 ~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~ 254 (409)
T 3kki_A 175 CDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASL 254 (409)
T ss_dssp HHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEES
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeec
Confidence 444433 235799999999999999998 778889999999999999998633211 0 11 23567999999
Q ss_pred ccccCCCCceEEEEeecCHHHHHHHHHHHhh--ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARKMTRFIEL--GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIR 263 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 263 (360)
||.++++| ||+++ ++++++.+...... .+.+.+...+.++.++++.+ ...++.+++++++++++.+.|+
T Consensus 255 sK~~~~~g---g~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~-----~~~~~~~~~~~~~~~~l~~~L~ 325 (409)
T 3kki_A 255 AKTFAYRA---GAIWC-NNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEII-----ESADNRRQHLDRMARKLRIGLS 325 (409)
T ss_dssp SSTTCSSC---EEEEE-SSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCCc---eEEEE-CHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHH
Confidence 99999664 99998 77777777654322 22335566666666666633 2236788899999999999999
Q ss_pred hcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEecC--ChHH
Q 018172 264 QSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGA--DAKYARVSMLS--REEI 336 (360)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~~--~~e~ 336 (360)
+++ +.+. +.++++|+.+++. ..+.+.|.++||.+.|+..+.. ..+++||++.. ++|+
T Consensus 326 ~~g-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~ 389 (409)
T 3kki_A 326 QLG-LTIR---------------SESQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQ 389 (409)
T ss_dssp TTT-CCCC---------------CSSSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHH
T ss_pred HcC-CccC---------------CCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHH
Confidence 883 3322 2334677777653 5577778888999988654322 35799999964 8999
Q ss_pred HHHHHHHHHHHHhc
Q 018172 337 FNIFLERLSAIQGG 350 (360)
Q Consensus 337 ~~~~~~~l~~~~~~ 350 (360)
+++++++|++++++
T Consensus 390 i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 390 IAKIIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999875
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=222.54 Aligned_cols=286 Identities=10% Similarity=-0.001 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH--HHHHHhCCeeeeecC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP--AETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~--~~~~~~g~~~~~~~~ 116 (360)
.++++.++++++.. ...+.+++|+|++++++.++..++++||+ |+++.|.|.... ..+...|.+++.++.
T Consensus 55 ~~~~~~la~~~g~~----~~~~~i~~~~ggt~al~~~~~~~~~~gd~----vi~~~~~~~~~~~~~~~~~~g~~~~~v~~ 126 (376)
T 3f0h_A 55 LENEKFMLEYAKAP----EGSKAVFMTCSSTGSMEAVVMNCFTKKDK----VLVIDGGSFGHRFVQLCEIHEIPYVALKL 126 (376)
T ss_dssp HHHHHHHHHHHTCC----TTCEEEEESSCHHHHHHHHHHHHCCTTCC----EEEEESSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHhCCC----CCceEEEEcCChhHHHHHHHHhccCCCCe----EEEEeCChhhHHHHHHHHHcCCceEEEeC
Confidence 66777788887751 01134555999999999999999999998 999988766543 346667999988876
Q ss_pred Ccc------cccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccc
Q 018172 117 DAN------TFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSK 187 (360)
Q Consensus 117 ~~~------~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK 187 (360)
+.+ .++. +++++++++++|+||||.+++ +.+.++|+++|+++|+|++|..+.........+.++++.|+||
T Consensus 127 ~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K 206 (376)
T 3f0h_A 127 EHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQK 206 (376)
T ss_dssp CTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTT
T ss_pred CCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcc
Confidence 532 2221 468999999999999999998 6788899999999999999986543322223456799999999
Q ss_pred ccC-CCCceEEEEeecCHHHHHHHHHHHh-----------------hccccCChHHHHHHHHHhcccCCCchhHHHHHHH
Q 018172 188 CTG-HAGSRIGWALVKDTEVARKMTRFIE-----------------LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRR 249 (360)
Q Consensus 188 ~~~-~~G~r~G~~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (360)
.++ ++| +|++++ ++++++.+..... ....+.+...+.++.++++.+.+. ..+++.++
T Consensus 207 ~l~~~~G--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~ 281 (376)
T 3f0h_A 207 VLACPPG--ISVIVL-APRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKH--GGADAEVA 281 (376)
T ss_dssp TTCCCSS--CEEEEE-CHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHT--THHHHHHH
T ss_pred cccCCCc--eEEEEE-CHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHh--cCHHHHHH
Confidence 998 666 677887 8888888764211 012234444445555555543221 25888999
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCccccc-CCchHHHHHHHHhh-CeeeeCCCCCCCCCCeEE
Q 018172 250 LMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLE-SKEDEDCEKLLRAE-RIMARGGRRFGADAKYAR 327 (360)
Q Consensus 250 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~-gI~~~pg~~f~~~~~~~R 327 (360)
+++++++++.+.|++++ +.+..+.... ..+.+.. -.+.+.+.+.|.++ ||.++||.... ..+++|
T Consensus 282 ~~~~~~~~l~~~L~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~-~~~~lR 348 (376)
T 3f0h_A 282 RIASQAADFRAKIKDLP-FELVSESPAN-----------GVTSVHPTTANAYDIFLKLKDEYGIWICPNGGEM-KDTIFR 348 (376)
T ss_dssp HHHHHHHHHHHHTTTSS-EEECCSSBBT-----------TEEEEEESSSCHHHHHHHHHHHSSEECEECCGGG-TTTCEE
T ss_pred HHHHHHHHHHHHHHHcC-CccCccccCc-----------eEEEEeCCCCCHHHHHHHHHHhCCEEEecCcccc-CCCEEE
Confidence 99999999999998874 3333222111 0111211 11236677777777 99999984322 367999
Q ss_pred EEecC--ChHHHHHHHHHHHHHHhc
Q 018172 328 VSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 328 ~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
+++.. ++|++++++++|++++++
T Consensus 349 is~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 349 VGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp EECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHh
Confidence 99853 899999999999999865
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=227.12 Aligned_cols=279 Identities=13% Similarity=0.057 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCCh-HHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGS-TQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~-t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
+++|+.++++++. .++++|++|+|+ ++++..++..+..+|+. +..|+++.++|.. ...++..| +++.++.+
T Consensus 51 ~~l~~~la~~~g~-----~~~~~v~~~~g~gt~al~~~~~~l~~~~~~-g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~ 122 (360)
T 1w23_A 51 EQAQNLLRELLQI-----PNDYQILFLQGGASLQFTMLPMNLLTKGTI-GNYVLTGSWSEKA-LKEAKLLG-ETHIAAST 122 (360)
T ss_dssp HHHHHHHHHHHTC-----CTTEEEEEESSHHHHHHHHHHHHHCCTTCE-EEEEECSHHHHHH-HHHHHTTS-EEEEEEEC
T ss_pred HHHHHHHHHHhCC-----CCCceEEEECCcchHHHHHHHHHhcCCCCc-ccEEEecchhHHH-HHHHHHhC-CeEEeecc
Confidence 7889999998885 123589999999 99999999999866421 1227777777754 33466679 99888765
Q ss_pred c-------ccccc---CCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccc
Q 018172 118 A-------NTFDK---NNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSK 187 (360)
Q Consensus 118 ~-------~~~~~---~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK 187 (360)
. +.+.. ++++++|++++|+||||.+++ ++++++|+++|+|++|..+..+...... +++++|+||
T Consensus 123 ~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~----~i~~~~~~~li~D~a~~~~~~~~~~~~~--di~~~s~sK 196 (360)
T 1w23_A 123 KANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ----NFPEINHAPLIADMSSDILSRPLKVNQF--GMIYAGAQK 196 (360)
T ss_dssp GGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECS----SCCCCCSSCEEEECTTTTTSSCCCGGGC--SEEEEETTT
T ss_pred cccCcCCccchHhhccCCCCCEEEEeCCCCCcceecc----cccccCCceEEEechhhcCCCCcCcccC--CEEEEEccc
Confidence 3 23322 467999999999999999988 3344699999999999865432111222 689999999
Q ss_pred ccCCCCceEEEEeecCHHHHHHHHHHH------------hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 018172 188 CTGHAGSRIGWALVKDTEVARKMTRFI------------ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERW 255 (360)
Q Consensus 188 ~~~~~G~r~G~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (360)
.++++| +||+++ ++++++.+.... .....+.+...+.++.++++.+.+. ..+++.++++++++
T Consensus 197 ~~~~~G--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~~~ 271 (360)
T 1w23_A 197 NLGPSG--VTVVIV-KKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDL--GGAEAIAKQNEEKA 271 (360)
T ss_dssp TTSCTT--CEEEEE-EHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHH
T ss_pred ccCCCC--cEEEEE-cHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHH
Confidence 999777 999998 677776654321 0112345666666676667643211 26889999999999
Q ss_pred HHHHHHHHhcCCc-ccC-CCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe
Q 018172 256 NMLRQVIRQSGVF-GLP-EYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSM 330 (360)
Q Consensus 256 ~~l~~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~ 330 (360)
+++.+.|++++++ ... .+.. ..+.++|+.+++. ..+.+.|.++||.++||..+ ++++|+|+
T Consensus 272 ~~l~~~L~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~---~~~iRis~ 337 (360)
T 1w23_A 272 KIIYDTIDESNGFYVGHAEKGS-----------RSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRS---VGGCRASI 337 (360)
T ss_dssp HHHHHHHHTTTTSSEESSCGGG-----------BCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTT---TCSEEEEC
T ss_pred HHHHHHHHHccCcccccCCchh-----------ccCcEEEEEcCCCccHHHHHHHHHHCCeeeecCCCC---CCeEEEEe
Confidence 9999999988643 221 1110 1122688888753 45666788899999998754 56899999
Q ss_pred cC--ChHHHHHHHHHHHHHHhc
Q 018172 331 LS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 331 ~~--~~e~~~~~~~~l~~~~~~ 350 (360)
.. ++|++++++++|++++++
T Consensus 338 ~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 338 YNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhh
Confidence 74 899999999999998754
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=225.21 Aligned_cols=289 Identities=13% Similarity=0.126 Sum_probs=201.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~ 113 (360)
..+||++++++++. . ++|++++| ++++..++. ++++||+ |++++|+|...... ++..|++++.
T Consensus 69 ~~~l~~~la~~~g~------~-~~i~~~sG-~~ai~~~~~-l~~~gd~----Vl~~~~~y~~~~~~~~~~~~~~G~~v~~ 135 (403)
T 3cog_A 69 RNCLEKAVAALDGA------K-YCLAFASG-LAATVTITH-LLKAGDQ----IICMDDVYGGTNRYFRQVASEFGLKISF 135 (403)
T ss_dssp HHHHHHHHHHHHTC------S-EEEEESCH-HHHHHHHHT-TSCTTCE----EEEESSCCHHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC------C-cEEEECCH-HHHHHHHHH-HhCCCCE----EEEeCCCcchHHHHHHHHHHHcCCEEEE
Confidence 37999999999985 3 56777776 589999998 8999998 99999999986554 3567999999
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcC-cEEEEeecccCCCC-CcCCCCCCccEEEecccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAE-GKLIHDLAYYWPQY-TPITGAADHDIMLFTLSK 187 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~-~~li~D~ay~~~~~-~~~~~~~~~~i~~~S~sK 187 (360)
++.+ .+.+.. ++++++|++++|+||||.+++ +.+.++|+++| +++|+|++|..+.+ .++ ..+.+++++|+||
T Consensus 136 v~~~d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~--~~~~div~~S~sK 213 (403)
T 3cog_A 136 VDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPL--ALGADISMYSATK 213 (403)
T ss_dssp ECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTT--TTTCSEEEEETTT
T ss_pred ECCCCHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCcc--ccCCeEEEEcChh
Confidence 9874 334432 468999999999999999998 67888899899 99999999987532 222 2578999999999
Q ss_pred ccCCCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 188 CTGHAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 188 ~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
.++.+| .|+||++++++++++.+......++.+.+++.+.++...++. +....++..++.+.+.+.+++++
T Consensus 214 ~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~--------l~~r~~~~~~n~~~l~~~l~~~~ 285 (403)
T 3cog_A 214 YMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKT--------LHVRMEKHFKNGMAVAQFLESNP 285 (403)
T ss_dssp TTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH--------HHHHHHHHHHHHHHHHHHHhcCC
Confidence 998666 479999985689999998777666667788888887776652 22233444556666667776653
Q ss_pred CcccCCCCCc----ccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeC---C----------CCC---------
Q 018172 267 VFGLPEYPLE----YCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARG---G----------RRF--------- 319 (360)
Q Consensus 267 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~p---g----------~~f--------- 319 (360)
.+...-.++- .+.+......+.++++.+.+++. +.+.+.+.+.||.++. | ..+
T Consensus 286 ~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~ 365 (403)
T 3cog_A 286 WVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDR 365 (403)
T ss_dssp TEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHH
T ss_pred CEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHH
Confidence 2221111100 00000001113355666677654 6777888888886542 2 111
Q ss_pred ---CCCCCeEEEEecC--ChHHHHHHHHHHHHHHh
Q 018172 320 ---GADAKYARVSMLS--REEIFNIFLERLSAIQG 349 (360)
Q Consensus 320 ---~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~ 349 (360)
|..++++|+|++. ++++++.+.++|.+++.
T Consensus 366 ~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 366 DVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp HHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred HhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence 3336799999977 45666666666665543
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-28 Score=225.08 Aligned_cols=267 Identities=15% Similarity=0.077 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHh---hc---CCC-CCCCceEEEeCCCCCCcHHHHHHhCCe-
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYA---LS---SPG-GPEPISVVSAAPYYSQYPAETDYLRSG- 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~---l~---~~g-d~~~~~vl~~~p~~~~~~~~~~~~g~~- 110 (360)
.++|++++++++. + ++|++|+|+++++..++.. +. ++| |+ |++++|+|..+...+...+..
T Consensus 73 ~~l~~~la~~~g~------~-~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~----vl~~~~~y~~~~~~~~~~~~~~ 141 (375)
T 2eh6_A 73 EELAHKLVKHFWT------E-GKVFFANSGTESVEAAIKLARKYWRDKGKNKWK----FISFENSFHGRTYGSLSATGQP 141 (375)
T ss_dssp HHHHHHHHHTSSS------C-EEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCE----EEEEBTCCCCSSHHHHHHCBCG
T ss_pred HHHHHHHHhhcCC------C-CeEEEeCchHHHHHHHHHHHHHHhccCCCCCCE----EEEECCCcCCCchhhhhhcCCc
Confidence 8999999999864 4 6899999999999999875 34 677 77 999999999887766554322
Q ss_pred ------------eeeec-CCcccccc--CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCC
Q 018172 111 ------------LYKWD-GDANTFDK--NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYT 170 (360)
Q Consensus 111 ------------~~~~~-~~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~ 170 (360)
+..++ .|.+.++. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|.+....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~ 221 (375)
T 2eh6_A 142 KFHKGFEPLVPGFSYAKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRT 221 (375)
T ss_dssp GGTTTTCSCCSSEEEECTTCHHHHHTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred cccCCCCCCCCCceeCCCchHHHHHHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Confidence 22332 23344433 357899999999999999954 45678888899999999999842211
Q ss_pred c--C-CCCCC--ccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHH
Q 018172 171 P--I-TGAAD--HDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFE 245 (360)
Q Consensus 171 ~--~-~~~~~--~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (360)
. . ....+ .+++ ||||.++ +|+|+||+++ ++++++.+.......+++.+++.|.++.++++. ++
T Consensus 222 ~~~~~~~~~~~~~d~~--s~SK~~~-~g~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~ 289 (375)
T 2eh6_A 222 GEFYAYQHFNLKPDVI--ALAKGLG-GGVPIGAILA-REEVAQSFTPGSHGSTFGGNPLACRAGTVVVDE--------VE 289 (375)
T ss_dssp SSSSGGGGGTCCCSEE--EECGGGG-TTSCCEEEEE-EHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHH--------HH
T ss_pred CcchhhhhcCCCCCEE--EEccccc-CCCCeEEEEE-cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHH--------HH
Confidence 1 1 11112 2333 7889999 7999999999 678877776532334567788888888777762 12
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCCCCC
Q 018172 246 YGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGADAK 324 (360)
Q Consensus 246 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~~~~ 324 (360)
+.+++++++++++.+.|++++... . .+.++|+|+++++. ..+.+.|.++||.+.|+. ++
T Consensus 290 ~~~~~~~~~~~~l~~~L~~~~~~~-~--------------~~~g~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~ 349 (375)
T 2eh6_A 290 KLLPHVREVGNYFKEKLKELGKGK-V--------------KGRGLMLGLELERECKDYVLKALEKGLLINCTA-----GK 349 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSE-E--------------EEETTEEEEECSSCCHHHHHHHHHTTEECEEET-----TT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-c--------------eEEEEEEEEEEcCcHHHHHHHHHHCCCEEecCC-----CC
Confidence 778888999999999998875311 1 12345788888644 667777778999999852 67
Q ss_pred eEEEEec--CChHHHHHHHHHHHHHH
Q 018172 325 YARVSML--SREEIFNIFLERLSAIQ 348 (360)
Q Consensus 325 ~~R~s~~--~~~e~~~~~~~~l~~~~ 348 (360)
++|+++. .++|++++++++|++++
T Consensus 350 ~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 350 VLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 9999975 38999999999998764
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-27 Score=218.92 Aligned_cols=287 Identities=14% Similarity=0.073 Sum_probs=208.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH----HHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET----DYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~~~~ 113 (360)
..+||++++++++. + ++++++|+++++..++..++++||+ |+++.|+|..+...+ +..|.+++.
T Consensus 68 ~~~l~~~la~~~g~-------~-~~~~~~sGt~A~~~al~~~~~~gd~----Vi~~~~~y~~~~~~~~~~~~~~g~~~~~ 135 (392)
T 3qhx_A 68 RTALEAALAAVEDA-------A-FGRAFSSGMAAADCALRAMLRPGDH----VVIPDDAYGGTFRLIDKVFTGWNVEYTP 135 (392)
T ss_dssp HHHHHHHHHHHTTC-------S-EEEEESSHHHHHHHHHHHHCCTTCE----EEEETTCCHHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC-------C-cEEEECCHHHHHHHHHHHHhCCCCE----EEEeCCCcchHHHHHHHHHHhcCcEEEE
Confidence 37899999999984 3 6888888899999999999999998 999999999887766 667999999
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+. .......+.++++.|+||.+
T Consensus 136 v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~-~~~~~~~~~di~~~S~sK~l 214 (392)
T 3qhx_A 136 VALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPA-LQQPLSLGADVVLHSTTKYI 214 (392)
T ss_dssp ECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTT-TCCGGGGTCSEEEEETTTTT
T ss_pred eCCCCHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccc-cCChHHhCCcEEEEcCcccc
Confidence 8864 334433 468999999999999999988 778889999999999999998542 11222456789999999999
Q ss_pred CCCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 GHAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+.+| .++||++++++++.+.+.......+.+.++..+.++...++. +....++..++.+.+.+.|.+++.+
T Consensus 215 g~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~--------l~~~~~~~~~~~~~l~~~L~~~~~v 286 (392)
T 3qhx_A 215 GGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKT--------LVLRMQRHSENAAAVAEFLAEHPAI 286 (392)
T ss_dssp TCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred CCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH--------HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9777 799999995589999998877767778888888877776652 3344556677778888888888654
Q ss_pred ccCCCCCcc----cccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeCCCCCC-------------------C
Q 018172 269 GLPEYPLEY----CNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARGGRRFG-------------------A 321 (360)
Q Consensus 269 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~pg~~f~-------------------~ 321 (360)
....+++.. +........+.+.++++.++++ +.+.+.|+..++.+..|..+. .
T Consensus 287 ~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~ 366 (392)
T 3qhx_A 287 STVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEV 366 (392)
T ss_dssp EEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCC
T ss_pred ceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCC
Confidence 333222110 0000111134466788888762 445566666677777665431 2
Q ss_pred CCCeEEEEecCChHHHHHHHHHHHHH
Q 018172 322 DAKYARVSMLSREEIFNIFLERLSAI 347 (360)
Q Consensus 322 ~~~~~R~s~~~~~e~~~~~~~~l~~~ 347 (360)
.++.+|||++. |+.++.++.+.+.
T Consensus 367 ~~~~iRlSvg~--e~~~~~i~~l~~a 390 (392)
T 3qhx_A 367 PDDLVRLSVGI--EDVADLLDDLKQA 390 (392)
T ss_dssp CTTEEEEECCS--SCHHHHHHHHHHH
T ss_pred CCCeEEEEecc--CCHHHHHHHHHHH
Confidence 36789999966 2334444444444
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=221.97 Aligned_cols=280 Identities=11% Similarity=-0.012 Sum_probs=195.2
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCC--CCCceEEEeCCCCCCcHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGG--PEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd--~~~~~vl~~~p~~~~~~~ 102 (360)
..|++..+. .+||++++++++. ++.+++ +|+++++..++..+.++|| . |+++.++|.....
T Consensus 41 ~~y~~~~~~-----~~l~~~la~~~~~-------~~~i~~-~~G~~a~~~al~~~~~~gd~~~----vi~~~~~~~~~~~ 103 (357)
T 3lws_A 41 DQYGTGAII-----EPFEQKFADVLGM-------DDAVFF-PSGTMAQQVALRIWSDETDNRT----VAYHPLCHLEIHE 103 (357)
T ss_dssp EETTEETTH-----HHHHHHHHHHHTC-------SEEEEE-SCHHHHHHHHHHHHHHHHTCCE----EEECTTCHHHHSS
T ss_pred ccccCChHH-----HHHHHHHHHHhCC-------CcEEEe-cCcHHHHHHHHHHHhhcCCCcE----EEecccceeeeec
Confidence 347655555 9999999999984 334444 6678899999999988887 4 7777766554333
Q ss_pred ---HHHHhCCeeeeecCCc-----cccccCCCeeEEEEcCCCCCC-cccch----HHHHHHhhhcCcEEEEeecccC---
Q 018172 103 ---ETDYLRSGLYKWDGDA-----NTFDKNNGAYIEVVNSPNNPD-GTIRE----AVLAKVNRSAEGKLIHDLAYYW--- 166 (360)
Q Consensus 103 ---~~~~~g~~~~~~~~~~-----~~~~~~~~~~~i~~~~p~NPt-G~~~~----~~~~~~~~~~~~~li~D~ay~~--- 166 (360)
.....|++++.++.+. +.+...++++++++++||||| |.+++ +.+.++|+++|+++|+|++|.+
T Consensus 104 ~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~ 183 (357)
T 3lws_A 104 QDGLKELHPIETILVGAADRLMTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEML 183 (357)
T ss_dssp TTHHHHHSSCEEEECSCTTSCCCHHHHHTCCSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHH
T ss_pred cchhhhccCcEEEEecCCCCCcCHHHHhcCcCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhh
Confidence 3555699998887432 223222458999999999998 99886 3566788889999999999861
Q ss_pred ---C-CCCcCCCCCCccEEEecccccc-CCCCceEEEEeecCHHHHHHHHHHHhhccccC--ChHHHHHHHHHhcccCCC
Q 018172 167 ---P-QYTPITGAADHDIMLFTLSKCT-GHAGSRIGWALVKDTEVARKMTRFIELGSIGV--SKESQLRAAKILGIVSDD 239 (360)
Q Consensus 167 ---~-~~~~~~~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 239 (360)
+ ....+. ...++++.|+||.+ ++.| ||+++ ++++++.+.+.+.....+. ..+.+.++.+.++
T Consensus 184 ~~~~~~~~~~~--~~~d~~~~s~sK~~~~~~g---g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----- 252 (357)
T 3lws_A 184 PYYEKTAAEIA--GLFDSIYISFYKGLGGIAG---AILAG-PAAFCQTARIWKRRYGGDLISLYPYIVSADYYYE----- 252 (357)
T ss_dssp HHHTCCHHHHH--TTSSEEEEESSSTTCCSSC---EEEEE-CHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHH-----
T ss_pred hhcCCChHHHH--hcCCEEEEeccccCCCCce---EEEEc-CHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHH-----
Confidence 1 111111 22345689999999 5444 99988 8999999987665433332 2333334334444
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCccc-CCCCCcccccccccCCCCCCcccccCCc-----hHHHHHHHHhhCeee
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGL-PEYPLEYCNFTGKFTNSHPGFAWLESKE-----DEDCEKLLRAERIMA 313 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gI~~ 313 (360)
.+.+++ +++.++++++.+.|++++++.+ ..+. .++|+|+++++ .+.+.+.|.++||.+
T Consensus 253 --~~~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v 316 (357)
T 3lws_A 253 --LRKDRM-GQYYEQAKQLAEQFNALPGVHTTPEVP-------------VSNMFHLHFDGQAADISPKLEQVQEETGLGF 316 (357)
T ss_dssp --HHTTCH-HHHHHHHHHHHHHHHTSTTEEEESSSC-------------SSSEEEEEEESCHHHHHHHHHHHHHHHCEES
T ss_pred --HHHHHH-HHHHHHHHHHHHHHHhCCCCeeccCCC-------------cceEEEEEecCChHHHHHHHHHHHHhcCeEE
Confidence 223333 3357778899999999877665 3333 33478888764 256788899999999
Q ss_pred eCCCCCCCCCCeEEEEec-----CChHHHHHHHHHHHHHH
Q 018172 314 RGGRRFGADAKYARVSML-----SREEIFNIFLERLSAIQ 348 (360)
Q Consensus 314 ~pg~~f~~~~~~~R~s~~-----~~~e~~~~~~~~l~~~~ 348 (360)
+||..|..+..++|+++. .++|++++++++|.+.+
T Consensus 317 ~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 317 VGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp CSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred ecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 999766643458999975 27799999999998765
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=218.27 Aligned_cols=277 Identities=11% Similarity=0.053 Sum_probs=191.3
Q ss_pred cccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH---
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA--- 102 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~--- 102 (360)
.|.+..+. ++||++++++++. + ++++++|+++++.+++..++++||+ |+++.|+|.....
T Consensus 33 ~y~~~~~~-----~~l~~~la~~~g~-------~-~~~~~~~gt~a~~~~~~~~~~~gd~----Vl~~~~~~~~~~~~~~ 95 (347)
T 1jg8_A 33 VYGEDPTI-----NELERLAAETFGK-------E-AALFVPSGTMGNQVSIMAHTQRGDE----VILEADSHIFWYEVGA 95 (347)
T ss_dssp GGTCCHHH-----HHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHHCCTTCE----EEEETTCHHHHSSTTH
T ss_pred ccCCChHH-----HHHHHHHHHHhCC-------c-eEEEecCcHHHHHHHHHHhcCCCCE----EEEcCcchhhhccccc
Confidence 46655665 9999999999984 2 5778888899999999999999998 9999999975432
Q ss_pred HHHHhCCeeeeecCC------cccccc--C------CCeeEEEEcCCCCCC-cccch----HHHHHHhhhcCcEEEEeec
Q 018172 103 ETDYLRSGLYKWDGD------ANTFDK--N------NGAYIEVVNSPNNPD-GTIRE----AVLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~------~~~~~~--~------~~~~~i~~~~p~NPt-G~~~~----~~~~~~~~~~~~~li~D~a 163 (360)
.+...|++++.+ .+ .+.+.. + +++++|++++||||| |.+++ +.+.++|+++|+++|+|++
T Consensus 96 ~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a 174 (347)
T 1jg8_A 96 MAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGA 174 (347)
T ss_dssp HHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEET
T ss_pred hhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehh
Confidence 567789998887 32 222211 2 268999999999999 99987 3556788889999999998
Q ss_pred ccCC-----CCCcCCCCCCccEEEeccccccCCCCceEE-EEeecCHHHHHHHHHHHhhcccc--CChHHHHHHHHHhcc
Q 018172 164 YYWP-----QYTPITGAADHDIMLFTLSKCTGHAGSRIG-WALVKDTEVARKMTRFIELGSIG--VSKESQLRAAKILGI 235 (360)
Q Consensus 164 y~~~-----~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G-~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~ 235 (360)
|..+ ......-....+.++.|+||.++.+ +| |+++ ++++++.+...+...+.+ .+...+.++...++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~---~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 250 (347)
T 1jg8_A 175 RIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP---VGSVVVG-DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTK 250 (347)
T ss_dssp THHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS---SCEEEEE-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHH
T ss_pred hhhcchhhcCCChHHhcccccEEEEecccccCCC---ceEEEEc-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Confidence 6421 1111100012335567899998843 56 4555 888988887665443333 344555555555653
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCe
Q 018172 236 VSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERI 311 (360)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI 311 (360)
.. ..++ +. .++++.+.+.|+++ ++.+..+ ++.++|+|+++++ ...+.+.|.++||
T Consensus 251 ~~----~~~~---~~-~~~~~~l~~~L~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi 309 (347)
T 1jg8_A 251 MV----DRLK---ED-HENARFLALKLKEI-GYSVNPE------------DVKTNMVILRTDNLKVNAHGFIEALRNSGV 309 (347)
T ss_dssp SS----TTHH---HH-HHHHHHHHHHHHHH-TCBCCGG------------GCCSSEEEEECTTSSSCHHHHHHHHHHHTE
T ss_pred HH----HHHH---HH-HHHHHHHHHHHHhc-CceeccC------------CCcceEEEEEcccccCCHHHHHHHHHHCCC
Confidence 21 2222 22 34667888888877 4443111 1234478888763 3667777788999
Q ss_pred eeeCCCCCCCCCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 312 MARGGRRFGADAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 312 ~~~pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
.++++. .+++|+++.. ++|++++++++|++++++
T Consensus 310 ~v~~~~-----~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 310 LANAVS-----DTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp ECEEEE-----TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEecCC-----CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 999852 4689999844 899999999999998754
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=222.03 Aligned_cols=286 Identities=13% Similarity=0.112 Sum_probs=203.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~ 113 (360)
..+|++.++++++. +++++++|+++++..++..++++||+ |+++.|+|..+...+.. .|.+++.
T Consensus 83 ~~~l~~~la~~~g~--------~~~~~~~sG~~Ai~~al~~l~~~Gd~----Vi~~~~~y~~~~~~~~~~~~~~g~~~~~ 150 (414)
T 3ndn_A 83 VSVFEERLRLIEGA--------PAAFATASGMAAVFTSLGALLGAGDR----LVAARSLFGSCFVVCSEILPRWGVQTVF 150 (414)
T ss_dssp HHHHHHHHHHHHTC--------SEEEEESSHHHHHHHHHHTTCCTTCE----EEEESCCCHHHHHHHHTHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHCC--------CcEEEECCHHHHHHHHHHHHhCCCCE----EEEcCCccchHHHHHHHHHHHcCcEEEE
Confidence 37888888888873 36888888899999999999999998 99999999998877654 8999999
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-CCcCCCCCCccEEEeccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ-YTPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~-~~~~~~~~~~~i~~~S~sK~ 188 (360)
++.+ .+.+.. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+. ..++ ..+.++++.|+||.
T Consensus 151 v~~~d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~--~~g~div~~S~sK~ 228 (414)
T 3ndn_A 151 VDGDDLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGF--PLGVDVVVYSGTKH 228 (414)
T ss_dssp ECTTCHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCG--GGTCSEEEEETTTT
T ss_pred eCCCCHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCch--hcCCCeEeccCCcc
Confidence 9874 344433 567999999999999999988 678889999999999999998431 1122 44568999999999
Q ss_pred cCCCC-ceEEEEeecCHHHHH-HHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 189 TGHAG-SRIGWALVKDTEVAR-KMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 189 ~~~~G-~r~G~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
++.+| +++|++++ +++.+. .+.......+.+.++....++...+ +.+....++..++++.+.+.|++++
T Consensus 229 l~~~G~~~~G~vv~-~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l--------~~l~~r~~~~~~~a~~l~~~L~~~p 299 (414)
T 3ndn_A 229 IDGQGRVLGGAILG-DREYIDGPVQKLMRHTGPAMSAFNAWVLLKGL--------ETLAIRVQHSNASAQRIAEFLNGHP 299 (414)
T ss_dssp TTCSSCCCCEEEEE-CHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHG--------GGHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ccCCCCceEEEEEE-CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99778 89999998 676665 6665554445555655554444433 3345556666788889999999887
Q ss_pred CcccCCCCCcc----cccccccCCCCCCcccccCCc-----h---HHHHHHHHhhCeeeeCCCCC---------------
Q 018172 267 VFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKE-----D---EDCEKLLRAERIMARGGRRF--------------- 319 (360)
Q Consensus 267 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~l~~~gI~~~pg~~f--------------- 319 (360)
.+....+++.. +........+.+.++++.+++ . ..+.+.|+..++.+.+|..+
T Consensus 300 ~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~ 379 (414)
T 3ndn_A 300 SVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMG 379 (414)
T ss_dssp TEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTH
T ss_pred CEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCCceeeCccccccccCC
Confidence 55433222210 000111123456788998864 3 44556666667777777543
Q ss_pred -------CCCCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 320 -------GADAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 320 -------~~~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
|..++++|||++. |+.+.+++.|.+.+
T Consensus 380 ~~~~~~~g~~~~~iRlsvG~--e~~~dli~dl~~al 413 (414)
T 3ndn_A 380 PEGRAAIGLGDGVVRISVGL--EDTDDLIADIDRAL 413 (414)
T ss_dssp HHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence 3346799999965 33455566665554
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=217.20 Aligned_cols=288 Identities=19% Similarity=0.157 Sum_probs=204.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH----HHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET----DYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~~~~ 113 (360)
.+++|+.++++++. + ++++|+|++++++.++..++++||+ |+++.|+|......+ +..|.+++.
T Consensus 58 ~~~l~~~la~~~g~-------~-~~~~~~~gt~a~~~al~~l~~~gd~----vi~~~~~~~~~~~~~~~~~~~~g~~~~~ 125 (412)
T 2cb1_A 58 AKALEERLKALEGA-------L-EAVVLASGQAATFAALLALLRPGDE----VVAAKGLFGQTIGLFGQVLSLMGVTVRY 125 (412)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESSHHHHHHHHHHTTCCTTCE----EEEETTCCHHHHHHHHHTTTTTTCEEEE
T ss_pred HHHHHHHHHHHhCC-------C-cEEEECCHHHHHHHHHHHHhCCCCE----EEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence 48999999999984 3 7999999999999999999999998 999999998766653 457999999
Q ss_pred ecCCcccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccccC
Q 018172 114 WDGDANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTG 190 (360)
Q Consensus 114 ~~~~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~~ 190 (360)
++.+.+.++. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+.........+.++++.|+||.++
T Consensus 126 ~~~~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~ 205 (412)
T 2cb1_A 126 VDPEPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWAS 205 (412)
T ss_dssp ECSSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTT
T ss_pred ECCCHHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCccccc
Confidence 9887655543 568999999999999999998 7788889999999999999986522222223568999999999998
Q ss_pred CCCceEEEEeecC-H--------------------------HHHHHHHHHH-hhccccCChHHHHHHHHHhcccCCCchh
Q 018172 191 HAGSRIGWALVKD-T--------------------------EVARKMTRFI-ELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 191 ~~G~r~G~~~~~~-~--------------------------~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
.+|.|+|++++.+ . ++.+.++... ...+...++.....+...++
T Consensus 206 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~-------- 277 (412)
T 2cb1_A 206 GHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLE-------- 277 (412)
T ss_dssp CSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGG--------
T ss_pred CCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCc--------
Confidence 8999999988744 2 4455555443 21223344444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcc----cccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCC-
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGR- 317 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~- 317 (360)
.++...++..++.+++.+.|.+++++.....++.. +........+.+.++.+.+.+.+.+.+.|.+.||.+ .++
T Consensus 278 ~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~~~~~~~~~~l~~~~i~~-~~s~ 356 (412)
T 2cb1_A 278 TVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLGDLERASRFLGAIRLLK-AANL 356 (412)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEECSSHHHHHHHHHHCSSEE-CSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHHHhCCeee-eccc
Confidence 23444555667888899999988766633222110 000000001234466666633377888898899998 764
Q ss_pred --------CC----------------CCCCCeEEEEecC--ChHHHHHHHHHHHH
Q 018172 318 --------RF----------------GADAKYARVSMLS--REEIFNIFLERLSA 346 (360)
Q Consensus 318 --------~f----------------~~~~~~~R~s~~~--~~e~~~~~~~~l~~ 346 (360)
.+ |..++.+|+|++. ++++++.+.++|++
T Consensus 357 g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 357 GDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp SCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred CCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 11 1126799999977 67888888887764
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=220.31 Aligned_cols=287 Identities=14% Similarity=0.101 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~~ 114 (360)
.++|++++++++. ++.|++++|+ +++..++..++++||+ |+++.|+|.++... ++..|++++.+
T Consensus 117 ~~l~~~lA~l~g~-------~~~v~~~sG~-~Ai~~al~~l~~~Gd~----Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v 184 (445)
T 1qgn_A 117 VVLEEKISALEGA-------ESTLLMASGM-CASTVMLLALVPAGGH----IVTTTDCYRKTRIFIETILPKMGITATVI 184 (445)
T ss_dssp HHHHHHHHHHHTC-------SEEEEESCHH-HHHHHHHHHHSCSSCE----EEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred HHHHHHHHHHhCC-------CcEEEeCCHH-HHHHHHHHHHhCCCCE----EEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence 6999999999984 3466666665 9999999999999998 99999999987764 55679999998
Q ss_pred cCC-cccccc--CCCe-eEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 115 DGD-ANTFDK--NNGA-YIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 115 ~~~-~~~~~~--~~~~-~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
+.+ .+.+.. ++++ ++|++++|+||||.+.+ +.+.++|+++|+++|+|++|..+... .+...+.+++++|+||.+
T Consensus 185 ~~~d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~-~~~~~g~Div~~S~sK~~ 263 (445)
T 1qgn_A 185 DPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-KALALGADLVLHSATKFL 263 (445)
T ss_dssp CSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CTTTTTCSEEEECTTTTT
T ss_pred CCCCHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-CccccCCEEEEECCcccc
Confidence 764 334432 3568 99999999999999998 77888899999999999999864322 223456789999999999
Q ss_pred CCCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 GHAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+..| .++||+++ ++++++.+.......+.+.++....++...++ .+....++..++.+.+.+.|.+++.+
T Consensus 264 gg~gd~~~G~l~~-~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~--------~l~~r~~~~~~~a~~l~~~L~~~p~v 334 (445)
T 1qgn_A 264 GGHNDVLAGCISG-PLKLVSEIRNLHHILGGALNPNAAYLIIRGMK--------TLHLRVQQQNSTALRMAEILEAHPKV 334 (445)
T ss_dssp TCSSSCCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGG--------GHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred cccccceEEEEEE-CHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 8554 47999998 88999988776654444456665555544443 23344455666788899999988765
Q ss_pred c-cCCCCC-c--ccccccccCCCCCCcccccCCch-HHHHHHHHh---hCeeeeCCCCC---------------------
Q 018172 269 G-LPEYPL-E--YCNFTGKFTNSHPGFAWLESKED-EDCEKLLRA---ERIMARGGRRF--------------------- 319 (360)
Q Consensus 269 ~-~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~---~gI~~~pg~~f--------------------- 319 (360)
. +..|.. . .+........+.++++++.+++. +...+.+.+ .++.+..|..+
T Consensus 335 ~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~ 414 (445)
T 1qgn_A 335 RHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAK 414 (445)
T ss_dssp EEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHT
T ss_pred eEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHh
Confidence 2 222210 0 00000001123566788888753 334444433 36777776543
Q ss_pred -CCCCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 320 -GADAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 320 -~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
|..++.+|||++ .|+++.+++.|+++++
T Consensus 415 ~g~~~~~iRlSvG--~Edid~li~~L~~al~ 443 (445)
T 1qgn_A 415 YGIMDNLVRFSFG--VEDFDDLKADILQALD 443 (445)
T ss_dssp TTCCSSEEEEECC--SSCHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEec--cCCHHHHHHHHHHHHh
Confidence 334579999996 4578999999998875
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=217.93 Aligned_cols=288 Identities=14% Similarity=0.139 Sum_probs=205.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~ 113 (360)
..+||++++++++. + +.++++++++++..++..++++||+ |+++.|+|..+... ++..|.+++.
T Consensus 61 ~~~l~~~la~~~g~-------~-~~i~~~sG~~ai~~~~~~~~~~gd~----vl~~~~~y~~~~~~~~~~~~~~g~~~~~ 128 (389)
T 3acz_A 61 VEQFEEMVCSIEGA-------A-GSAAFGSGMGAISSSTLAFLQKGDH----LIAGDTLYGCTVSLFTHWLPRFGIEVDL 128 (389)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESSHHHHHHHHHTTTCCTTCE----EEEESSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCC-------C-eEEEeCCHHHHHHHHHHHHhCCCCE----EEEeCCCchHHHHHHHHHHHHcCCEEEE
Confidence 37999999999984 3 4566666789999999999999998 99999999987766 5778999999
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-CcCCCCCCccEEEeccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-TPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-~~~~~~~~~~i~~~S~sK~ 188 (360)
++.+ .+.+.. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+.. .++ ..+.++++.|+||.
T Consensus 129 v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~--~~~~di~~~S~sK~ 206 (389)
T 3acz_A 129 IDTSDVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPL--ELGADIALHSVSKY 206 (389)
T ss_dssp ECTTCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGG--GTTCSEEEEETTTT
T ss_pred ECCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCcc--ccCCeEEEECChhh
Confidence 8753 344433 467899999999999999998 7788889989999999999986432 222 25689999999999
Q ss_pred cCCCCceE-EEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 189 TGHAGSRI-GWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 189 ~~~~G~r~-G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
++.+|.|+ ||++++++++++.+.......+.+.++..+.++...++. +....++..++.+.+.+.|++++.
T Consensus 207 ~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~--------l~~r~~~~~~~~~~l~~~l~~~~~ 278 (389)
T 3acz_A 207 INGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKT--------LPIRMQIHMENGLKVAKFLEQHEK 278 (389)
T ss_dssp TTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccH--------HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99899998 999994338999888776545566677777766666652 223334555667777777777643
Q ss_pred cccCCCCCc----ccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeC---C------CCC---------------
Q 018172 268 FGLPEYPLE----YCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARG---G------RRF--------------- 319 (360)
Q Consensus 268 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~p---g------~~f--------------- 319 (360)
+.....++- .+.+......+.++++.+.+++.+.+.+.|.+.||.+++ | ..+
T Consensus 279 v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~ 358 (389)
T 3acz_A 279 IVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRK 358 (389)
T ss_dssp EEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSHHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHH
T ss_pred eeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECCHHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHh
Confidence 222111110 000000011234567777776556778888888998877 3 111
Q ss_pred -CCCCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 320 -GADAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 320 -~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
|..++++|+|++.. +.+++++.|.+.++
T Consensus 359 ~g~~~~~iRlsvg~~--~~~~li~~l~~al~ 387 (389)
T 3acz_A 359 QGITPELVRISVGIE--NVDDIIADLKQALE 387 (389)
T ss_dssp HTCCTTEEEEECCSS--CHHHHHHHHHHHHT
T ss_pred cCCCcCeEEEEeccC--CHHHHHHHHHHHHh
Confidence 22357999999653 55667777777664
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=218.60 Aligned_cols=287 Identities=15% Similarity=0.175 Sum_probs=203.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH----HHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET----DYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~~~~ 113 (360)
..++|+.++++++. ++ .++++++++++..++..++++||+ |+++.|+|..+...+ ...|.+++.
T Consensus 67 ~~~l~~~la~~~g~-------~~-~i~~~sG~~a~~~~l~~~~~~gd~----vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 134 (398)
T 1gc0_A 67 LNLLEARMASLEGG-------EA-GLALASGMGAITSTLWTLLRPGDE----VLLGNTLYGCTFAFLHHGIGEFGVKLRH 134 (398)
T ss_dssp HHHHHHHHHHHHTC-------SE-EEEESSHHHHHHHHHHHHCCTTCE----EEEESSCCSHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC-------Cc-EEEECCHHHHHHHHHHHHhcCCCE----EEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence 48999999999984 33 444555579999999999999998 999999999988776 667999998
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-CcCCCCCCccEEEeccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-TPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-~~~~~~~~~~i~~~S~sK~ 188 (360)
++.+ .+.+.. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+.. .++ ..+.++++.|+||.
T Consensus 135 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~--~~~~d~~~~S~sK~ 212 (398)
T 1gc0_A 135 VDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPL--ELGADLVVHSATKY 212 (398)
T ss_dssp ECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGG--GGTCSEEEEETTTT
T ss_pred ECCCCHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCch--hhCceEEEECCccc
Confidence 8753 333332 468999999999999999998 7788889999999999999985321 122 34678999999999
Q ss_pred cCCCCceE-EEEeecCHHHHH-HHHHHHhh-ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 018172 189 TGHAGSRI-GWALVKDTEVAR-KMTRFIEL-GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS 265 (360)
Q Consensus 189 ~~~~G~r~-G~~~~~~~~~~~-~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (360)
++.+|.|+ ||+++ +++.++ .+...... .+.+.+++.+.++.+.++. +....+...++.+.+.+.|+++
T Consensus 213 ~~~~~~~~~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~l~~~L~~~ 283 (398)
T 1gc0_A 213 LSGHGDITAGIVVG-SQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT--------LNLRMDRHCANAQVLAEFLARQ 283 (398)
T ss_dssp TTCSSSCCCEEEEE-CHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCeEEEEEE-ChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccch--------HHHHHHHHHHHHHHHHHHHhcC
Confidence 99999998 99988 666655 56555544 4566788888777666652 3445556677777788888776
Q ss_pred CCcccCCCCCc----ccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeC---CCC-------------------
Q 018172 266 GVFGLPEYPLE----YCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARG---GRR------------------- 318 (360)
Q Consensus 266 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~p---g~~------------------- 318 (360)
+.+.....++. .+........+.++++.+.+++. +.+.+.+.+.+|.++. |..
T Consensus 284 ~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~ 363 (398)
T 1gc0_A 284 PQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEE 363 (398)
T ss_dssp TTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHH
T ss_pred CCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHH
Confidence 53321111000 00000001124566777788755 6788888888988766 321
Q ss_pred ---CCCCCCeEEEEecC--ChHHHHHHHHHHHHH
Q 018172 319 ---FGADAKYARVSMLS--REEIFNIFLERLSAI 347 (360)
Q Consensus 319 ---f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~ 347 (360)
.|..++++|+|++. ++++++.+.++|+++
T Consensus 364 ~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 364 RAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp HHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 12235899999977 577888888877764
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-26 Score=215.18 Aligned_cols=285 Identities=13% Similarity=0.066 Sum_probs=206.3
Q ss_pred cccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
.|.+..+. .++|++++++++. + ++++++|+++++..++..+ +++||+ |+++.|+|..+...+
T Consensus 58 ~y~~~~~~-----~~l~~~la~~~~~-------~-~~v~~~~Gt~a~~~~l~~~~~~~gd~----vl~~~~~~~~~~~~~ 120 (399)
T 2oga_A 58 RYLLGPEL-----EGFEAEFAAYCET-------D-HAVGVNSGMDALQLALRGLGIGPGDE----VIVPSHTYIASWLAV 120 (399)
T ss_dssp CCSSSHHH-----HHHHHHHHHHTTS-------S-EEEEESCHHHHHHHHHHHTTCCTTCE----EEEESSSCTHHHHHH
T ss_pred CCCCchhH-----HHHHHHHHHHHCC-------C-eEEEecCHHHHHHHHHHHhCCCCcCE----EEECCCccHHHHHHH
Confidence 46555555 9999999999985 2 5777777899999999999 889998 999999999999999
Q ss_pred HHhCCeeeeecCCccc--ccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCC
Q 018172 105 DYLRSGLYKWDGDANT--FDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITG 174 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~~--~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~ 174 (360)
+..|++++.++.+.+. ++. ++++++|+ |+||||...+ +.+.++|+++|+++|+|++|..+.......
T Consensus 121 ~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~ 197 (399)
T 2oga_A 121 SATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRR 197 (399)
T ss_dssp HHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEE
T ss_pred HHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCee
Confidence 9999999999876532 221 35788877 6789999987 778888998999999999998643211110
Q ss_pred -CCCccEEEecc--ccccCCCCceEEEEeecCHHHHHHHHHHHhhc------------cccCChHHHHHHHHHhcccCCC
Q 018172 175 -AADHDIMLFTL--SKCTGHAGSRIGWALVKDTEVARKMTRFIELG------------SIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 175 -~~~~~i~~~S~--sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
..-.++++.|+ ||.++.+| |+||++++++++++.+....... ....+.+.+.++.+.++
T Consensus 198 ~~~~~di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~----- 271 (399)
T 2oga_A 198 IGAGSSVAAFSFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLA----- 271 (399)
T ss_dssp TTCTTCEEEEECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHH-----
T ss_pred cccccCEEEEeCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHH-----
Confidence 11137899999 79999779 99999985589998887765431 12345666655555554
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCC-CCCcccccccccCCCCCCccc--ccC--CchHHHHHHHHhhCeeee
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPE-YPLEYCNFTGKFTNSHPGFAW--LES--KEDEDCEKLLRAERIMAR 314 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~l~~~gI~~~ 314 (360)
.+++..++.+++.+++.+.|++++++.+.. +.++ +++| +.+ .+...+.+.|.++||.++
T Consensus 272 ---~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~L~~~gI~v~ 335 (399)
T 2oga_A 272 ---HLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDT-------------DPVWHLFTVRTERRDELRSHLDARGIDTL 335 (399)
T ss_dssp ---THHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTE-------------ECCCSSEEEECSSHHHHHHHHHHTTBCCB
T ss_pred ---HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCC-------------cceeEEEEEECCCHHHHHHHHHHCCCcee
Confidence 233455566677788888888876655432 2222 1333 222 234778888889999998
Q ss_pred CCCCC-----------CCC-----------CCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 315 GGRRF-----------GAD-----------AKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 315 pg~~f-----------~~~-----------~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
++... +.. .+++||++.. ++|++++++++|++++++.+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l~ 397 (399)
T 2oga_A 336 THYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERVD 397 (399)
T ss_dssp CSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 85421 100 2579999864 89999999999999987643
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-27 Score=216.34 Aligned_cols=276 Identities=13% Similarity=0.115 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH--HHHh--CCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE--TDYL--RSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~--~~~~--g~~~~~~ 114 (360)
.++++.++++++ ++++|++|+|+++++..++..+.++||. |+++.|+|...... +... |.+++.+
T Consensus 46 ~~l~~~la~~~g-------~~~~v~~~~~gt~a~~~al~~~~~~gd~----vi~~~~~~~~~~~~~~~~~~~~g~~~~~v 114 (356)
T 1v72_A 46 AQVKRKFCEIFE-------RDVEVFLVPTGTAANALCLSAMTPPWGN----IYCHPASHINNDECGAPEFFSNGAKLMTV 114 (356)
T ss_dssp HHHHHHHHHHHT-------SCCEEEEESCHHHHHHHHHHTSCCTTEE----EEECTTSHHHHSSTTHHHHHTTSCEEEEC
T ss_pred HHHHHHHHHHhC-------CCCcEEEeCCccHHHHHHHHHhcCCCCE----EEEcCccchhhhhchHHHHHhCCcEEEEe
Confidence 788888888876 2346999999999999999999999998 99999999877666 7777 9999988
Q ss_pred cCC-----cccccc---CC-------CeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCC-----CCC
Q 018172 115 DGD-----ANTFDK---NN-------GAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWP-----QYT 170 (360)
Q Consensus 115 ~~~-----~~~~~~---~~-------~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~-----~~~ 170 (360)
+.+ .+.++. ++ ++++|++++||| ||.+++ +.+.++|+++|+++|+|++|... ...
T Consensus 115 ~~~~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~ 193 (356)
T 1v72_A 115 DGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS 193 (356)
T ss_dssp CCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC
T ss_pred cCCCCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC
Confidence 764 222222 22 689999999987 999887 35667888899999999998631 111
Q ss_pred -cCCC-CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHH
Q 018172 171 -PITG-AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGR 248 (360)
Q Consensus 171 -~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (360)
.... ..+.++++.|+||. +. ....||+++ ++++++.+.......+. .+...+.++.+.++.+.+ ....+..
T Consensus 194 ~~~~~~~~~~d~~~~s~sK~-g~-~~G~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~---~~~~~~~ 266 (356)
T 1v72_A 194 PAEMTWKAGVDALSFGATKN-GV-LAAEAIVLF-NTSLATEMSYRRKRAGH-LSSKMRFLSAQIDAYLTD---DLWLRNA 266 (356)
T ss_dssp TTTTTGGGTCCEEEECCGGG-TC-SSCEEEEES-SGGGHHHHHHHHHHTTC-CCSSTHHHHHHHHHHTST---THHHHHH
T ss_pred HHHhhhhhcCCEEEEecccC-CC-cCccEEEEE-CHHHHhhHHHHhhccCc-hhhhHHHHHHHHHHHHHh---hhHHHHH
Confidence 1111 12345667799997 42 233448887 78888887765432221 111122222222333222 3445567
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEE
Q 018172 249 RLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARV 328 (360)
Q Consensus 249 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~ 328 (360)
++++++++++.+.|++++++.+..|.+ ++|+|++++ ..+.+.|.++||.++||. |+ ++++|+
T Consensus 267 ~~~~~~~~~l~~~L~~~~g~~~~~~~~-------------~~~~~~~~~--~~~~~~l~~~gi~v~~g~-~~--~~~iRi 328 (356)
T 1v72_A 267 RKANAAAQRLAQGLEGLGGVEVLGGTE-------------ANILFCRLD--SAMIDALLKAGFGFYHDR-WG--PNVVRF 328 (356)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEEESCCC-------------SSEEEEEEC--HHHHHHHHHTTCBCBCSS-SS--TTEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCcEEccCCC-------------ccEEEEEcC--HHHHHHHHhcCeEEeccc-cC--CCeEEE
Confidence 778888999999998876665544433 347788776 356666788899999987 65 679999
Q ss_pred EecC--ChHHHHHHHHHHHHHHhch
Q 018172 329 SMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 329 s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
++.. ++|++++++++|++++++.
T Consensus 329 ~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 329 VTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp ECCTTCCHHHHHHHHHHHHHTC---
T ss_pred EecCCCCHHHHHHHHHHHHHHHHhh
Confidence 9754 8999999999999988654
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=217.66 Aligned_cols=291 Identities=15% Similarity=0.118 Sum_probs=204.7
Q ss_pred ccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHH
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETD 105 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~ 105 (360)
|.+..+. .++|++++++++. + ++|++|+| |+++++++..+ +++||+ |+++.|+|..+...++
T Consensus 34 ~~~~~~~-----~~l~~~la~~~~~------~-~~i~~~sG-t~al~~~l~~l~~~~gd~----Vi~~~~~~~~~~~~~~ 96 (388)
T 1b9h_A 34 RMGGDEV-----NSFEREFAAHHGA------A-HALAVTNG-THALELALQVMGVGPGTE----VIVPAFTFISSSQAAQ 96 (388)
T ss_dssp TTTCSHH-----HHHHHHHHHHTTC------S-EEEEESCH-HHHHHHHHHHTTCCTTCE----EEEESSSCTHHHHHHH
T ss_pred ecCCHHH-----HHHHHHHHHHhCC------C-eEEEeCCH-HHHHHHHHHHcCCCCcCE----EEECCCccHHHHHHHH
Confidence 4445555 9999999999985 3 57888777 89999999999 889998 9999999999999999
Q ss_pred HhCCeeeeecCCccc--ccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCc-C-C
Q 018172 106 YLRSGLYKWDGDANT--FDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTP-I-T 173 (360)
Q Consensus 106 ~~g~~~~~~~~~~~~--~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~-~-~ 173 (360)
..|++++.++++.+. ++. ++++++|+ |+||||.+.+ +.+.++|+++|+++|+|++|+.+.... . .
T Consensus 97 ~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~ 173 (388)
T 1b9h_A 97 RLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRV 173 (388)
T ss_dssp HTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEG
T ss_pred HcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeec
Confidence 999999999877542 221 35778777 9999999988 778888998999999999998543210 1 1
Q ss_pred CCCCccEEEeccccccCCCCceEEEEeecCHHH--HHHHHHHHhhc-----------cccCC-hHHHHHHHHHhcccCCC
Q 018172 174 GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEV--ARKMTRFIELG-----------SIGVS-KESQLRAAKILGIVSDD 239 (360)
Q Consensus 174 ~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~--~~~l~~~~~~~-----------~~~~~-~~~~~~~~~~l~~~~~~ 239 (360)
...+ ++.+.||||..+++|.|+||++++++.+ ++.+....... ..+.+ .+.+.+++.++..
T Consensus 174 ~~~~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~---- 248 (388)
T 1b9h_A 174 GELD-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ---- 248 (388)
T ss_dssp GGSS-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH----
T ss_pred cccc-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHH----
Confidence 1222 6889999977666677999999843335 56665443210 00111 1222222222221
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----h-HHHHHHHHhhCeeee
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----D-EDCEKLLRAERIMAR 314 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~gI~~~ 314 (360)
.+++++.+++++++++++.+.|++++++.+..+... .....++++|+.+++ . +.+.+.|.++||.++
T Consensus 249 -~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~ 320 (388)
T 1b9h_A 249 -LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVR-------ADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAF 320 (388)
T ss_dssp -HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTT-------CCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEE
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcC-------CCccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcc
Confidence 145677888888999999999998866554432110 001224578888874 2 667788888999998
Q ss_pred CCCCCC----------CC------------------CCeEEEEecC---ChHHHHHHHHHHHHHHhc
Q 018172 315 GGRRFG----------AD------------------AKYARVSMLS---REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 315 pg~~f~----------~~------------------~~~~R~s~~~---~~e~~~~~~~~l~~~~~~ 350 (360)
++.... .. .+.+||++.. ++|++++++++|++++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 321 AAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp ECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 864310 00 1259999855 789999999999998754
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=218.51 Aligned_cols=281 Identities=11% Similarity=0.072 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEE-cCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc-HHHHHHh--CCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVI-GTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY-PAETDYL--RSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~-t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~-~~~~~~~--g~~~~~~ 114 (360)
+++|+.++++++. .++++|++ |+|++++++.++.+++++| . +++..+.|... ...+... |.+++.+
T Consensus 81 ~~~~~~la~~~g~-----~~~~~i~~~t~g~t~al~~~~~~l~~~g-v----~~v~~~~~~~~~~~~~~~~~~g~~~~~v 150 (398)
T 2fyf_A 81 GRVRSGLAELFSL-----PDGYEVILGNGGATAFWDAAAFGLIDKR-S----LHLTYGEFSAKFASAVSKNPFVGEPIII 150 (398)
T ss_dssp HHHHHHHHHHTTC-----CTTCEEEEEETCHHHHHHHHHHHTCSSC-E----EEEECSHHHHHHHHHHHHCTTSCCCEEE
T ss_pred HHHHHHHHHHhCC-----CCCceEEEeCCchhHHHHHHHHHhcCCC-e----EEEeCCHHHHHHHHHHHHhCCCCceEEE
Confidence 7889999998885 12358998 9999999999999998876 1 23344444321 2244555 7888888
Q ss_pred cCCccccc----cCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 115 DGDANTFD----KNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 115 ~~~~~~~~----~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
+.+ ++.. .++++++|++++|+||||.+++ +++.++ +|+++|+|++|..+..+. +..+.++++.|+||.+
T Consensus 151 ~~~-~g~~~~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~--~~~~~di~~~s~sK~~ 224 (398)
T 2fyf_A 151 TSD-PGSAPEPQTDPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPV--DIAETDAYYFAPQKNF 224 (398)
T ss_dssp ECC-TTCCCCCCCCTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCC--CGGGCSEEEECTTSTT
T ss_pred ecC-CCCCCCccccCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCccc--CcccCcEEEEecCccc
Confidence 776 2221 2467899999999999999988 333332 899999999998654321 1123678999999999
Q ss_pred CCCCceEEEEeecCHHHHHHHHHHH---------------------hhccccCChHHHHHHHHHhcccCCCchhHHHHHH
Q 018172 190 GHAGSRIGWALVKDTEVARKMTRFI---------------------ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGR 248 (360)
Q Consensus 190 ~~~G~r~G~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (360)
+++| ++||+++ ++++++.+.+.. .....+.+...+.++.++++.+.+. .++++.+
T Consensus 225 ~~~g-g~g~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~--g~~~~~~ 300 (398)
T 2fyf_A 225 ASDG-GLWLAIM-SPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGN--GGLDWAV 300 (398)
T ss_dssp CSCS-SEEEEEE-CHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHH--TSHHHHH
T ss_pred CCCC-ceEEEEE-CHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHc--cCHHHHH
Confidence 9775 6999998 788888875431 1122346666777777777643210 2278899
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCC-cccccCCc---hHHHHHHHHhhCeeeeCCCCCCCCCC
Q 018172 249 RLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPG-FAWLESKE---DEDCEKLLRAERIMARGGRRFGADAK 324 (360)
Q Consensus 249 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~l~~~gI~~~pg~~f~~~~~ 324 (360)
++++++++++.+.|++++++.+..+... ..++ ++|+.+++ ...+.+.|.++||.+++|... .+.+
T Consensus 301 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~-~~~~ 369 (398)
T 2fyf_A 301 KRTADSSQRLYSWAQERPYTTPFVTDPG----------LRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRK-LGRN 369 (398)
T ss_dssp HHHHHHHHHHHHHHHHSTTEEESCCSGG----------GBCSSEEEEEECTTSCHHHHHHHHHHTTCBCCSCCTT-TCSS
T ss_pred HHHHHHHHHHHHHHHHcCCceeccCChh----------hcCCcEEEEECCCCCCHHHHHHHHHHCCcEEecCccc-CCCC
Confidence 9999999999999999865555421100 0122 67887753 367778888889999987322 2357
Q ss_pred eEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 325 YARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 325 ~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
++|+|+.. ++|++++++++|++++++
T Consensus 370 ~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 370 QLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 99999974 899999999999998764
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=226.12 Aligned_cols=277 Identities=12% Similarity=0.023 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH---hhcCCCCCCCceEEEeCCCCCCcH-HHHHHhCCe----
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALY---ALSSPGGPEPISVVSAAPYYSQYP-AETDYLRSG---- 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~---~l~~~gd~~~~~vl~~~p~~~~~~-~~~~~~g~~---- 110 (360)
.+||++++++++ + . .+++|++|+|+++++..++. .+.++| . |++++|+|+.+. ..+...|.+
T Consensus 87 ~~l~~~la~~~~--~-~--~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~----vi~~~p~y~~~~~~~~~~~g~~~~~~ 156 (426)
T 1sff_A 87 LELCEIMNQKVP--G-D--FAKKTLLVTTGSEAVENAVKIARAATKRS-G----TIAFSGAYHGRTHYTLALTGKVNPYS 156 (426)
T ss_dssp HHHHHHHHHHSS--C-S--SCEEEEEESSHHHHHHHHHHHHHHHHTCC-E----EEEETTCCCCSSHHHHHHSSCCTTTT
T ss_pred HHHHHHHHHhCC--c-c--cccEEEEeCchHHHHHHHHHHHHHhhCCC-e----EEEECCCcCCCchHhhhhcCCccccc
Confidence 999999999984 1 1 23689999999999999988 667766 5 999999998765 456655643
Q ss_pred ---------eeeecCCc-----------ccccc--C-----CCeeEEEE-cCCCCCCc-ccch----HHHHHHhhhcCcE
Q 018172 111 ---------LYKWDGDA-----------NTFDK--N-----NGAYIEVV-NSPNNPDG-TIRE----AVLAKVNRSAEGK 157 (360)
Q Consensus 111 ---------~~~~~~~~-----------~~~~~--~-----~~~~~i~~-~~p~NPtG-~~~~----~~~~~~~~~~~~~ 157 (360)
++.++.+. +.++. + +++++|++ ++++| || ..++ +.+.++|+++|++
T Consensus 157 ~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~ 235 (426)
T 1sff_A 157 AGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIM 235 (426)
T ss_dssp TTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCE
T ss_pred cccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCE
Confidence 55555432 12211 1 46677777 46778 99 5564 4667889999999
Q ss_pred EEEeecccCCCCC-c-C-CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhc
Q 018172 158 LIHDLAYYWPQYT-P-I-TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILG 234 (360)
Q Consensus 158 li~D~ay~~~~~~-~-~-~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 234 (360)
+|+||+|.+.... . . ....+....+.||||.++. |+|+||+++ ++++++.+.......+.+.|++.|.++.++++
T Consensus 236 li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~-GlriG~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~ 313 (426)
T 1sff_A 236 LIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAG-GFPLAGVTG-RAEVMDAVAPGGLGGTYAGNPIACVAALEVLK 313 (426)
T ss_dssp EEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGT-SSCCEEEEE-EHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHH
T ss_pred EEEechhhccCcccchhhhhhcCCCCCEEEEcccccC-CCceEEEEE-cHHHHhhhccCCcCcCCCCCHHHHHHHHHHHH
Confidence 9999999943211 1 1 1222333445599999995 999999999 78888877643334567789999999988777
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHhc----CCcccCCCCCcccccccccCCCCCCcccccCC--------c---h
Q 018172 235 IVSDDYPNFFEYGRRLMSERWNMLRQVIRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------E---D 299 (360)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~ 299 (360)
.+.+ ++..++++++++++.+.|+++ +.+... .+.++|+|++++ + .
T Consensus 314 ~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--------------~~~g~~~~~~~~~~~~~~~~~~~~~ 373 (426)
T 1sff_A 314 VFEQ------ENLLQKANDLGQKLKDGLLAIAEKHPEIGDV--------------RGLGAMIAIELFEDGDHNKPDAKLT 373 (426)
T ss_dssp HHHH------TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEE--------------EEETTEEEEEEBGGGCTTSBCHHHH
T ss_pred HHHh------cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE--------------EEEEEEEEEEEecCccccCCChHHH
Confidence 4422 134455666667777766654 211111 123457788773 2 2
Q ss_pred HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhch
Q 018172 300 EDCEKLLRAERIMARGGRRFGADAKYARVSML--SREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 300 ~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~~ 351 (360)
..+.+.|.++||.++||..+ ++++||+++ .+++++++++++|++++.+.
T Consensus 374 ~~l~~~l~~~gi~v~~~~~~---~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 374 AEIVARARDKGLILLSCGPY---YNVLRILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp HHHHHHHHHTTEECEEESTT---SCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcEEecCCCC---CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 55677777889999998764 569999985 39999999999999998653
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=222.23 Aligned_cols=275 Identities=10% Similarity=0.045 Sum_probs=200.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCC----------CCCCCceEEEeCCCCCCcHHHHHHh
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSP----------GGPEPISVVSAAPYYSQYPAETDYL 107 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~----------gd~~~~~vl~~~p~~~~~~~~~~~~ 107 (360)
..++++.++++++ . +++++|+|+++++..++..+..+ ++. |+++.|+|......+...
T Consensus 80 ~~~l~~~la~~~g-------~-~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~----vi~~~~~~~~~~~~~~~~ 147 (392)
T 3ruy_A 80 LGPWYEKVAKLTN-------K-EMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAE----IIVCEDNFHGRTMGAVSM 147 (392)
T ss_dssp HHHHHHHHHHHHT-------C-SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCE----EEEETTCCCCSSHHHHHT
T ss_pred HHHHHHHHHHhcC-------C-CEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcE----EEEEcCCcCCCCHhhhhc
Confidence 4888888888887 3 48999999999999999877643 455 999999998776665544
Q ss_pred CCe-------------eeeecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccC
Q 018172 108 RSG-------------LYKWDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYW 166 (360)
Q Consensus 108 g~~-------------~~~~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~ 166 (360)
+.. +..++. |.+.++. ++++++|++++|+||||.+++ +.+.++|+++|+++|+||+|.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~ 227 (392)
T 3ruy_A 148 SSNEEYKRGFGPMLPGIIVIPYGDLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTG 227 (392)
T ss_dssp CSCTTTTTTCCSCCSSEEEECTTCHHHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTT
T ss_pred cCChhhccccCCCCCCCeeeCcccHHHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhC
Confidence 322 334443 3333332 468999999999999999986 4677889999999999999974
Q ss_pred CCCC--cC-CCCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 167 PQYT--PI-TGAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 167 ~~~~--~~-~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
.... .. ....+...-+.||||.++ +| +|+||+++ ++++++.+.......+++.+++.+.++.++++.+ .
T Consensus 228 ~~~~g~~~~~~~~~~~~d~~~~SK~l~-gG~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~ 300 (392)
T 3ruy_A 228 LGRTGKVFACDWDNVTPDMYILGKALG-GGVFPISCAAA-NRDILGVFEPGSHGSTFGGNPLACAVSIAALEVL-----E 300 (392)
T ss_dssp TTTTSSSSGGGGGTCCCSEEEECGGGG-TTTSCCEEEEE-CHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHH-----H
T ss_pred CCccccchhhhccCCCCCEEEEchhhh-CChhhhEEEEE-CHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHH-----H
Confidence 2211 11 111111112337789877 57 99999999 8898888876666667889999999999988743 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCC
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGA 321 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~ 321 (360)
. ++.+++++++++++.+.|++++...+. ...+.++|+++.+++. ..+.+.|.++||.+.||.
T Consensus 301 ~-~~~~~~~~~~~~~l~~~L~~~~~~~~~------------~~~~~g~~~~~~~~~~~~~l~~~l~~~gi~v~~~~---- 363 (392)
T 3ruy_A 301 E-EKLTERSLQLGEKLVGQLKEIDNPMIT------------EVRGKGLFIGIELNEPARPYCEQLKAAGLLCKETH---- 363 (392)
T ss_dssp H-TTHHHHHHHHHHHHHHHHTTCCCTTEE------------EEEEETTEEEEEESSCSHHHHHHHHTTTEECCCBT----
T ss_pred h-hhHHHHHHHHHHHHHHHHHHhcCCCce------------EEEeeeeEEEEEEcchHHHHHHHHHHCCcEEecCC----
Confidence 1 677888999999999999887321110 0112344566666533 777778889999999874
Q ss_pred CCCeEEEEe--cCChHHHHHHHHHHHHHHh
Q 018172 322 DAKYARVSM--LSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 322 ~~~~~R~s~--~~~~e~~~~~~~~l~~~~~ 349 (360)
++++|+++ ..++|++++++++|++++.
T Consensus 364 -~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 392 (392)
T 3ruy_A 364 -ENVIRIAPPLVISEEDLEWAFQKIKAVLS 392 (392)
T ss_dssp -TTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 67999994 3489999999999998863
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-27 Score=219.31 Aligned_cols=289 Identities=12% Similarity=0.056 Sum_probs=196.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH----HHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA----ETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~----~~~~~g~~~~~ 113 (360)
..++|++++++++. ++ .+++++++++++.++. ++++||+ |+++.|+|.+... .++..|++++.
T Consensus 57 ~~~lr~~la~~~g~-------~~-~i~~~sGt~a~~~al~-~~~~gd~----Vi~~~~~y~~~~~~~~~~~~~~G~~v~~ 123 (393)
T 1n8p_A 57 RENLERAVAALENA-------QY-GLAFSSGSATTATILQ-SLPQGSH----AVSIGDVYGGTHRYFTKVANAHGVETSF 123 (393)
T ss_dssp HHHHHHHHHHHTTC-------SE-EEEESCHHHHHHHHHH-TSCSSCE----EEEESSCCHHHHHHHHHTSTTTCSCCEE
T ss_pred HHHHHHHHHHHhCC-------Cc-EEEECChHHHHHHHHH-HcCCCCE----EEEeCCCchHHHHHHHHHHHHcCcEEEE
Confidence 38999999999985 33 4445455999999999 8899998 9999999986554 45567999998
Q ss_pred ecCCcccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhc----CcEEEEeecccCCCCCcCCCCCCccEEEeccc
Q 018172 114 WDGDANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSA----EGKLIHDLAYYWPQYTPITGAADHDIMLFTLS 186 (360)
Q Consensus 114 ~~~~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~----~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~s 186 (360)
++.+.+.++. ++++++|++++||||||.+++ +.+.++|+++ |+++|+|++|..+..... ...+.++++.|+|
T Consensus 124 v~~~d~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~-~~~~~di~~~S~s 202 (393)
T 1n8p_A 124 TNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNP-LNFGADIVVHSAT 202 (393)
T ss_dssp ESSHHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCG-GGGTCSEEEEETT
T ss_pred eCCChHHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCH-HHcCCeEEEEECc
Confidence 8764233332 467999999999999999998 6788888889 999999999985432211 2236889999999
Q ss_pred cccCCCCceE-EEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 018172 187 KCTGHAGSRI-GWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS 265 (360)
Q Consensus 187 K~~~~~G~r~-G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (360)
|.++.+|+|+ ||++++++++++.+.......+.+.++..+.++...++ .+....+...++.+.+.+.|.++
T Consensus 203 K~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~~~~l~~~L~~~ 274 (393)
T 1n8p_A 203 KYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLK--------TLHLRVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp TTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT--------THHHHHHHHHHHHHHHHHHHTSC
T ss_pred ccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc--------hHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999 99988458899988877654455566666655555454 23344555566777778888776
Q ss_pred CC-cccC-CCCC-cc--cccccccCCC-C-CCcccccCCch-HHHH---HHHHhhCeeeeCCC----------CC-----
Q 018172 266 GV-FGLP-EYPL-EY--CNFTGKFTNS-H-PGFAWLESKED-EDCE---KLLRAERIMARGGR----------RF----- 319 (360)
Q Consensus 266 ~~-~~~~-~~~~-~~--~~~~~~~~~~-~-~~~~~~~~~~~-~~~~---~~l~~~gI~~~pg~----------~f----- 319 (360)
+. +... .|.- .. +........+ . ++++++.+++. .... +.|...++.+..|+ .+
T Consensus 275 ~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~ 354 (393)
T 1n8p_A 275 KENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIP 354 (393)
T ss_dssp TTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSC
T ss_pred CCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCCCCCcceeeccccccccccC
Confidence 53 2211 1110 00 0000000012 3 56788888643 3333 33433344443332 11
Q ss_pred -------CCCCCeEEEEecC--ChHHHHHHHHHHHHHH
Q 018172 320 -------GADAKYARVSMLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 320 -------~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~ 348 (360)
|..++.+|+|++. ++++++.+.++|+++.
T Consensus 355 ~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 355 KEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp TTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 2235789999977 6788888888887653
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=226.15 Aligned_cols=286 Identities=12% Similarity=0.018 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc--------CCCCCCCceEEEeCCCCCCc----------
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS--------SPGGPEPISVVSAAPYYSQY---------- 100 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~--------~~gd~~~~~vl~~~p~~~~~---------- 100 (360)
.++|++++++++. ++++|++|+|+++++..++..+. ++||+ |+++.|+|..+
T Consensus 64 ~~l~~~la~~~g~------~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~----vl~~~p~y~~~~~i~~~~~~h 133 (432)
T 3a9z_A 64 NTARASLAKMIGG------KPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRT----VDQISPEEGTRPHFITCTVEH 133 (432)
T ss_dssp HHHHHHHHHHHTC------CGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEETTCC
T ss_pred HHHHHHHHHHcCC------CcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCcc----ccccccccccCCeEEEecCcc
Confidence 6999999999985 45689999999999999999886 58988 99999999876
Q ss_pred -------HHHHHHhCCeeeeecCCc-cc-ccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcC--------
Q 018172 101 -------PAETDYLRSGLYKWDGDA-NT-FDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAE-------- 155 (360)
Q Consensus 101 -------~~~~~~~g~~~~~~~~~~-~~-~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~-------- 155 (360)
...++..|++++.++.+. ++ ++. ++++++|++++|+||||.+++ +++.++|++++
T Consensus 134 ~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~ 213 (432)
T 3a9z_A 134 DSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGL 213 (432)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccC
Confidence 233445699999998764 22 211 357999999999999999998 67788888888
Q ss_pred --cEEEEeecccCCCCCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHH-HHHHHHH-------HhhccccCChHH
Q 018172 156 --GKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEV-ARKMTRF-------IELGSIGVSKES 225 (360)
Q Consensus 156 --~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~-~~~l~~~-------~~~~~~~~~~~~ 225 (360)
+++|+|++|..+.........+.++++.|+||.+| .|+||+++ ++++ ...+... ......+.+.+.
T Consensus 214 ~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g---~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (432)
T 3a9z_A 214 PRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYG---PRIGALYV-RGVGKLTPLYPMLFGGGQERNFRPGTENTPM 289 (432)
T ss_dssp CCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTC---CSCEEEEE-TTBTTTBCCCCSCCSSCGGGGTSCSCCCHHH
T ss_pred CceEEEEEchhhhCCcccChhhcCCCEEEEehhHhcC---CcceEEEE-ccccccCCcCceeecCCccccccCCCcCHHH
Confidence 99999999986543211112245678999999875 45999999 4443 2222211 122334677788
Q ss_pred HHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccc--CCCC-CcccccccccCCCCCCcccccCCc----
Q 018172 226 QLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGL--PEYP-LEYCNFTGKFTNSHPGFAWLESKE---- 298 (360)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---- 298 (360)
+.++.++++.+. .++++.+++++++++++.+.|++++++.+ ..+. +.. ..+.++++.+++
T Consensus 290 ~~a~~aal~~~~----~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 356 (432)
T 3a9z_A 290 IAGLGKAADLVS----ENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVE---------RLPNTCNFSIQGSQLR 356 (432)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCC---------BCTTEEEEEECSTTCC
T ss_pred HHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCccc---------CCCCEEEEEeCCCCCc
Confidence 877777776432 56889999999999999999988633322 1221 000 111122333322
Q ss_pred hHHHHHHHHhhCeeeeCCCCC---------------CCC----CCeEEEEecC--ChHHHHHHHHHHHHHHhchhc
Q 018172 299 DEDCEKLLRAERIMARGGRRF---------------GAD----AKYARVSMLS--REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 299 ~~~~~~~l~~~gI~~~pg~~f---------------~~~----~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~~ 353 (360)
...+.+.+ .+|.+.+|..+ |.. .+++||++.. ++|++++++++|++++++.++
T Consensus 357 ~~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 357 GYMVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp HHHHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHh--cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 23343333 37777776544 211 3799999976 899999999999999876543
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=216.77 Aligned_cols=275 Identities=15% Similarity=0.127 Sum_probs=197.0
Q ss_pred HHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc---HHHHHHhCC--eeeeecCCc
Q 018172 44 AINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY---PAETDYLRS--GLYKWDGDA 118 (360)
Q Consensus 44 ~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~---~~~~~~~g~--~~~~~~~~~ 118 (360)
.++++++. +.++|++++| ++++..++..++++||+ |+++.|+|..+ ...++..|. ..+.++++.
T Consensus 77 ~la~~~g~------~~~~i~~~sG-t~a~~~~~~~~~~~gd~----Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 145 (407)
T 2dkj_A 77 RAKALFGA------AWANVQPHSG-SQANMAVYMALMEPGDT----LMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRP 145 (407)
T ss_dssp HHHHHHTC------SEEECCCSSH-HHHHHHHHHHHCCTTCE----EEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCT
T ss_pred HHHHHhCC------CcceEEecch-HHHHHHHHHHhcCCCCE----EEEecccccCccchHHHHHhcCceEEEEecCCCc
Confidence 67777775 3434666666 56999999999999998 99999999998 355566666 444443332
Q ss_pred c--cccc-------C-CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCC----CCCcCCCCCCccEEEe
Q 018172 119 N--TFDK-------N-NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWP----QYTPITGAADHDIMLF 183 (360)
Q Consensus 119 ~--~~~~-------~-~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~----~~~~~~~~~~~~i~~~ 183 (360)
+ .++. + .++++|++++|+|| ...+ +.+.++|+++|+++|+|++|..+ ...... ....+++++
T Consensus 146 ~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~-~~~~di~~~ 222 (407)
T 2dkj_A 146 DTELIDLEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP-LPYAHVVTS 222 (407)
T ss_dssp TTSSCCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC-TTTCSEEEE
T ss_pred ccCccCHHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCc-cccccEEEE
Confidence 1 1211 1 37899999999998 3444 67778888899999999999741 111111 113689999
Q ss_pred ccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHH-HHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 018172 184 TLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQL-RAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVI 262 (360)
Q Consensus 184 S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (360)
|+||.+ +|.|+||++++++++++.+......+..+.+.+.+. ++.++++.... .++++.+++++++++++.+.|
T Consensus 223 s~sK~l--~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~~~l~~~L 297 (407)
T 2dkj_A 223 TTHKTL--RGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQ---PEFKEYSRLVVENAKRLAEEL 297 (407)
T ss_dssp ESSGGG--CCCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccC--CCCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHH
Confidence 999954 588999999933899999887764444444334333 55556653322 678899999999999999999
Q ss_pred HhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeeeCCCCC----C-CCCCeEEEEec--
Q 018172 263 RQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMARGGRRF----G-ADAKYARVSML-- 331 (360)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~pg~~f----~-~~~~~~R~s~~-- 331 (360)
+++ ++.+..+. +.++|+|+.++. ...+.+.|.++||.+++|..| + ..++++|+++.
T Consensus 298 ~~~-g~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~ 364 (407)
T 2dkj_A 298 ARR-GYRIVTGG------------TDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAI 364 (407)
T ss_dssp HHT-TCEEGGGS------------CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHH
T ss_pred HhC-CceeecCC------------CCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccc
Confidence 988 44443211 234477888763 367778888999999998754 2 13678999995
Q ss_pred ----CChHHHHHHHHHHHHHHhc
Q 018172 332 ----SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 332 ----~~~e~~~~~~~~l~~~~~~ 350 (360)
.+++++++++++|++++++
T Consensus 365 ~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 365 TTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp HHTTCCGGGHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHhc
Confidence 6899999999999999876
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=218.13 Aligned_cols=278 Identities=15% Similarity=0.086 Sum_probs=201.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC-------CC-CCCCceEEEeCCCCCCcHHHHHHhCC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS-------PG-GPEPISVVSAAPYYSQYPAETDYLRS 109 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~-------~g-d~~~~~vl~~~p~~~~~~~~~~~~g~ 109 (360)
..++++.++++++ . ++|++|+|+++++..++..+.. +| |. |++++|+|..+...+...+.
T Consensus 83 ~~~l~~~la~~~~-------~-~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~----vi~~~~~y~~~~~~~~~~~~ 150 (406)
T 4adb_A 83 VLRLAKKLIDATF-------A-DRVFFCNSGAEANEAALKLARKFAHDRYGSHKSG----IVAFKNAFHGRTLFTVSAGG 150 (406)
T ss_dssp HHHHHHHHHHHSS-------C-SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCE----EEEETTCCCCSSHHHHHHSS
T ss_pred HHHHHHHHHhhCC-------C-CeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcE----EEEECCCcCCCcHHHhhccC
Confidence 3777777777775 2 3899999999999999998864 55 66 99999999999766665554
Q ss_pred -------------eeeeecC-Ccccccc--CCCeeEEEEcCCCCCCcccc--h----HHHHHHhhhcCcEEEEeecccCC
Q 018172 110 -------------GLYKWDG-DANTFDK--NNGAYIEVVNSPNNPDGTIR--E----AVLAKVNRSAEGKLIHDLAYYWP 167 (360)
Q Consensus 110 -------------~~~~~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~--~----~~~~~~~~~~~~~li~D~ay~~~ 167 (360)
++..++. |.+.++. ++++++|+++ |+||||.++ + +.+.++|+++|+++|+||+|.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~ 229 (406)
T 4adb_A 151 QPAYSQDFAPLPADIRHAAYNDINSASALIDDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGV 229 (406)
T ss_dssp CGGGTGGGCSCCSSEEEECTTCHHHHHTTCSTTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CccccccCCCCCCCceEeCCCcHHHHHHHhcCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 3333332 3333333 3678999988 999999876 4 46778899999999999999742
Q ss_pred CCCc--CC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 168 QYTP--IT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 168 ~~~~--~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
.... .. .....+++ ||||.++ +|+|+||+++ ++++++.+.......+++.+++.|.++.++++.+..
T Consensus 230 ~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---- 301 (406)
T 4adb_A 230 GRTGELYAYMHYGVTPDLL--TTAKALG-GGFPVGALLA-TEECARVMTVGTHGTTYGGNPLASAVAGKVLELINT---- 301 (406)
T ss_dssp TTTSSSSHHHHHTCCCSEE--EECGGGG-TTSCCEEEEE-CHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS----
T ss_pred CccchhHHHHhcCCCCCEE--Eechhhc-CCCCeEEEEE-cHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh----
Confidence 2111 11 01122333 7799999 9999999998 899998887766566788999999999988875421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----hHHHHHHHHhhCeeeeCCC
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----DEDCEKLLRAERIMARGGR 317 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gI~~~pg~ 317 (360)
++.+++++++++++.+.|+++.. ...... ...+.++++|+.+++ ...+.+.|.++||.+.|+.
T Consensus 302 --~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~ 369 (406)
T 4adb_A 302 --PEMLNGVKQRHDWFVERLNTINH-RYGLFS---------EVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAG 369 (406)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHH-HHCCEE---------EEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESS
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHH-hCCCce---------EEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecC
Confidence 56777888888888888877521 000000 011234467777764 3677788888899999854
Q ss_pred CCCCCCCeEEEEe--cCChHHHHHHHHHHHHHHhchhc
Q 018172 318 RFGADAKYARVSM--LSREEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 318 ~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~~~~ 353 (360)
++++|+++ ..++|++++++++|++++++.++
T Consensus 370 -----~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 370 -----GNVVRFAPALNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp -----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred -----CCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 67999954 44999999999999999987654
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=220.41 Aligned_cols=284 Identities=9% Similarity=-0.038 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC--------CCCCCCceEEEeCCCCCCcHHHHHHhCC-
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS--------PGGPEPISVVSAAPYYSQYPAETDYLRS- 109 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~--------~gd~~~~~vl~~~p~~~~~~~~~~~~g~- 109 (360)
.++++.++++++. ..++|++|+|+++++..++..+.. +++. |++.+|+|..+...+..++.
T Consensus 75 ~~l~~~la~~~~~------~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~----vi~~~~~yhg~~~~~~~~~~~ 144 (430)
T 3i4j_A 75 EEYAGRLARFVGL------PTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFK----VITRVPSYHGASLGSLAASGM 144 (430)
T ss_dssp HHHHHHHHHHTTC------TTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCE----EEEETTC--------------
T ss_pred HHHHHHHHHhCCC------CCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcE----EEEEeCCcCCCCcccccccCc
Confidence 5566666665542 345899999999999999988863 3455 99999999988766554433
Q ss_pred --------------eeeeecCCc---------ccccc--C----CCeeEEEEcCCCC-CCcccch-----HHHHHHhhhc
Q 018172 110 --------------GLYKWDGDA---------NTFDK--N----NGAYIEVVNSPNN-PDGTIRE-----AVLAKVNRSA 154 (360)
Q Consensus 110 --------------~~~~~~~~~---------~~~~~--~----~~~~~i~~~~p~N-PtG~~~~-----~~~~~~~~~~ 154 (360)
++..++.+. +.++. + .++++|+++.+|| ++|...+ +.+.++|+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~ 224 (430)
T 3i4j_A 145 GARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEA 224 (430)
T ss_dssp -----------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHH
T ss_pred cccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHc
Confidence 233333221 22221 1 3455666666677 8998654 4677889999
Q ss_pred CcEEEEeecccCCCCC-cC--CCCC-CccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHH----HhhccccCChHH
Q 018172 155 EGKLIHDLAYYWPQYT-PI--TGAA-DHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRF----IELGSIGVSKES 225 (360)
Q Consensus 155 ~~~li~D~ay~~~~~~-~~--~~~~-~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~----~~~~~~~~~~~~ 225 (360)
|+++|+||+|.+.... .. .... +...-+.+|||.++ .| +|+||+++ ++++++.+.+. ....+++.|+++
T Consensus 225 ~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~sK~l~-~G~~r~G~~~~-~~~i~~~~~~~~~~~~~~~t~~~~~~~ 302 (430)
T 3i4j_A 225 GIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLA-AGYAPLAGLLA-APQVYETVMGGSGAFMHGFTYAGHPVS 302 (430)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEECGGGT-TTSSCCEEEEE-CHHHHHHHHHTTCBCCCCCTTTTCHHH
T ss_pred CCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEccccc-CCccccEEEEE-CHHHHHHHhccCCcccccCCCCCCHHH
Confidence 9999999999843211 11 1112 22222447899999 69 99999999 89999999874 344667899999
Q ss_pred HHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch------
Q 018172 226 QLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED------ 299 (360)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 299 (360)
|.++.++++.+.+. .+.++.++..+..++.+.+.+.+++.+....+. ++|+++.+.+.
T Consensus 303 ~aaa~aal~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------g~~~~~~~~~~~~~~~~ 366 (430)
T 3i4j_A 303 VAAGLSVLDIVERE--DLTGAAKERGAQLLAGLQALQARFPQMMQVRGT--------------GLLLGVVLGDLATGQAF 366 (430)
T ss_dssp HHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE--------------TTEEEEEEC--------
T ss_pred HHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE--------------EEEEEEEeccccccCCC
Confidence 99999988754332 566666666666666666666566544433332 33556655321
Q ss_pred ------HHHHHHHHhhCeeeeCCCCC--CCCCCeEEEEec--CChHHHHHHHHHHHHHHhc
Q 018172 300 ------EDCEKLLRAERIMARGGRRF--GADAKYARVSML--SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 300 ------~~~~~~l~~~gI~~~pg~~f--~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~ 350 (360)
..+.+.|.++||.++|+..+ +...+++||+++ .++|++++++++|++++++
T Consensus 367 ~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 367 ETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp ----CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 45777788999999997422 224679999986 4999999999999999875
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=207.75 Aligned_cols=289 Identities=13% Similarity=0.105 Sum_probs=206.5
Q ss_pred cccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
.|.+..+. .++|++++++++. + ++++++|+++++..++..+ +++||+ |+++.|+|..+...+
T Consensus 33 ~~~~~~~~-----~~l~~~la~~~~~-------~-~~~~~~~gt~a~~~~~~~~~~~~gd~----v~~~~~~~~~~~~~~ 95 (374)
T 3uwc_A 33 DFTLGAEL-----EKFEKRFAALHNA-------P-HAIGVGTGTDALAMSFKMLNIGAGDE----VITCANTFIASVGAI 95 (374)
T ss_dssp CCSSCHHH-----HHHHHHHHHHTTC-------S-EEEEESCHHHHHHHHHHHTTCCTTCE----EEEESSSCHHHHHHH
T ss_pred CcccChhH-----HHHHHHHHHHhCC-------C-cEEEeCCHHHHHHHHHHHcCCCCCCE----EEECCCccHHHHHHH
Confidence 35555665 9999999999985 3 7889999999999999999 999998 999999999999999
Q ss_pred HHhCCeeeeecCC------cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCc-CCC
Q 018172 105 DYLRSGLYKWDGD------ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTP-ITG 174 (360)
Q Consensus 105 ~~~g~~~~~~~~~------~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~-~~~ 174 (360)
+..|.+++.++.+ .+.+.. ++++++|+ |+||||...+ +.+.++|+++|+++|+|++|..+.... ..-
T Consensus 96 ~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~ 172 (374)
T 3uwc_A 96 VQAGATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFV 172 (374)
T ss_dssp HHTTCEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEET
T ss_pred HHcCCEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeec
Confidence 9999999998875 222322 35778877 8999999988 778888999999999999998643211 111
Q ss_pred CCCccEEEeccc--cccCCCCceEEEEeecCHHHHHHHHHHHhhcc------------ccCChHHHHHHHHHhcccCCCc
Q 018172 175 AADHDIMLFTLS--KCTGHAGSRIGWALVKDTEVARKMTRFIELGS------------IGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 175 ~~~~~i~~~S~s--K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
....++++.|+| |.++.+|. .|+++++++++.+.+........ ...+.....+....+
T Consensus 173 ~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~------- 244 (374)
T 3uwc_A 173 GSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM------- 244 (374)
T ss_dssp TSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG-------
T ss_pred cccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH-------
Confidence 111478888877 99985465 88988867788888877653211 112222222221111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCC-cccCCCC-CcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGV-FGLPEYP-LEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~ 318 (360)
..+++..++.+++.+++.+.|+++++ +.+.... +....| ..+.+..++.+.+.+.|+++||.++++..
T Consensus 245 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~L~~~gi~v~~~~~ 314 (374)
T 3uwc_A 245 -NQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVF---------HIYVLRVKYRDQLFQYLKDNGIEVKIHYP 314 (374)
T ss_dssp -GGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCC---------SSEEEEETTHHHHHHHHHHTTBCCBCSCS
T ss_pred -HHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceee---------EEEEEEcCCHHHHHHHHHHCCCccccCCC
Confidence 45667778888888899999988875 5543222 111110 01223334447888889999999998752
Q ss_pred C-----------CC-----------CCCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 319 F-----------GA-----------DAKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 319 f-----------~~-----------~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
. +. ..+.+|+++.. ++|++++++++|++++++..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~~ 372 (374)
T 3uwc_A 315 IAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEKH 372 (374)
T ss_dssp SCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTTT
T ss_pred CccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 1 00 01579998865 89999999999999997653
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-27 Score=219.11 Aligned_cols=274 Identities=15% Similarity=0.070 Sum_probs=194.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc--CCCCCCCceEEEeCCCCCCc-HHHHHHhCCe----
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS--SPGGPEPISVVSAAPYYSQY-PAETDYLRSG---- 110 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~--~~gd~~~~~vl~~~p~~~~~-~~~~~~~g~~---- 110 (360)
..++++.++++++. ..++|++|+|+++++..++..+. .+|+. |++++|+|+.. ...+...|.+
T Consensus 89 ~~~l~~~la~~~~~------~~~~v~~~~gg~~a~~~al~~~~~~~~~~~----vi~~~~~y~~~~~~~~~~~g~~~~~~ 158 (395)
T 1vef_A 89 RGEFYRTLTAILPP------ELNRVFPVNSGTEANEAALKFARAHTGRKK----FVAAMRGFSGRTMGSLSVTWEPKYRE 158 (395)
T ss_dssp HHHHHHHHHHTSCT------TEEEEEEESSHHHHHHHHHHHHHHHHSCCE----EEEETTCCCCSSHHHHHTCCCHHHHG
T ss_pred HHHHHHHHHHhcCC------CcCEEEEcCcHHHHHHHHHHHHHHHhCCCe----EEEEcCCcCCCchhhhhhcCCccccc
Confidence 37888888888753 34689999999999999998764 56776 99999999754 4566666765
Q ss_pred --------eeeec-CCcccccc--CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCC--cC
Q 018172 111 --------LYKWD-GDANTFDK--NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYT--PI 172 (360)
Q Consensus 111 --------~~~~~-~~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~--~~ 172 (360)
+..++ .|.+.++. ++++++|+++.++||||.+++ +.+.++|+++|+++|+|++|.+.... ..
T Consensus 159 ~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~ 238 (395)
T 1vef_A 159 PFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF 238 (395)
T ss_dssp GGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred ccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchh
Confidence 33333 23344432 457889888777889998764 45678899999999999999842111 11
Q ss_pred C---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHH
Q 018172 173 T---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRR 249 (360)
Q Consensus 173 ~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (360)
. .....+++ ||||.++. |+|+||+++ ++++++.+.......+++.+.+.+.++.++++.+. . ++.++
T Consensus 239 ~~~~~~~~~d~~--s~sK~~~~-g~~~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~----~--~~~~~ 308 (395)
T 1vef_A 239 AFEHFGIVPDIL--TLAKALGG-GVPLGVAVM-REEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE----R--TRLWE 308 (395)
T ss_dssp THHHHTCCCSEE--EECGGGGT-TSSCEEEEE-EHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH----H--HTTHH
T ss_pred HhhhcCCCCCEE--EEcccccC-CCceEEEEe-hHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHH----h--CCHHH
Confidence 0 01122333 88999994 999999999 67777776553233456688888888888776431 1 35678
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHH-hhCeeeeCCCCCCCCCCeEE
Q 018172 250 LMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLR-AERIMARGGRRFGADAKYAR 327 (360)
Q Consensus 250 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~-~~gI~~~pg~~f~~~~~~~R 327 (360)
+++++++++.+.|++++. .... ...+.++|+|+++++. ..+.+.|. ++||.++|+ .++++|
T Consensus 309 ~~~~~~~~l~~~l~~~~~-~~~~-----------~~~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~-----~~~~iR 371 (395)
T 1vef_A 309 RAAELGPWFMEKLRAIPS-PKIR-----------EVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQA-----GPTVIR 371 (395)
T ss_dssp HHHHHHHHHHHHHHTSCC-TTEE-----------EEEEETTEEEEEESSCSHHHHHHHHHHHCEECEES-----STTEEE
T ss_pred HHHHHHHHHHHHHHHhhc-CceE-----------EEEEEEEEEEEEEcChHHHHHHHHHHHCCeEEecC-----CCCEEE
Confidence 888899999999988743 1100 0113345788888653 66667777 899999986 267999
Q ss_pred EEec--CChHHHHHHHHHHHHHH
Q 018172 328 VSML--SREEIFNIFLERLSAIQ 348 (360)
Q Consensus 328 ~s~~--~~~e~~~~~~~~l~~~~ 348 (360)
|+++ .+++++++++++|++++
T Consensus 372 i~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 372 FLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 9875 38999999999999876
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=209.16 Aligned_cols=281 Identities=14% Similarity=0.055 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
.++|++++++++. +++++|+|+++++..++..+ +++||+ |+++.|+|..+...++..|++++.++.+
T Consensus 42 ~~l~~~la~~~~~--------~~~~~~~~gt~al~~~~~~~~~~~gd~----Vl~~~~~~~~~~~~~~~~g~~~~~v~~~ 109 (393)
T 1mdo_A 42 QELEAAFCRLTGN--------QYAVAVSSATAGMHIALMALGIGEGDE----VITPSMTWVSTLNMIVLLGANPVMVDVD 109 (393)
T ss_dssp HHHHHHHHHHHCC--------SEEEEESCHHHHHHHHHHHTTCCTTCE----EEEESSSCHHHHHHHHHTTCEEEEECBC
T ss_pred HHHHHHHHHHhCC--------CcEEEecChHHHHHHHHHHcCCCCCCE----EEeCCCccHhHHHHHHHCCCEEEEEecc
Confidence 9999999999984 37999999999999999999 899998 9999999999999999999999999877
Q ss_pred cccc--cc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCC-ccEEEeccc
Q 018172 118 ANTF--DK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAAD-HDIMLFTLS 186 (360)
Q Consensus 118 ~~~~--~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~-~~i~~~S~s 186 (360)
.+++ +. ++++++|+++ ||||...+ +.+.++|+++|+++|+|++|+.+..... ...+ +++++.|+|
T Consensus 110 ~~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~~~~~d~~~~S~~ 185 (393)
T 1mdo_A 110 RDTLMVTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKG-RHIGARGTAIFSFH 185 (393)
T ss_dssp TTTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETT-EETTSSSEEEEECC
T ss_pred CCcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECC-eecCCCCeEEEeCC
Confidence 5432 21 3578888865 48999887 6788889889999999999985421111 1122 789999999
Q ss_pred cccCCCCceEEEEeecCHHHHHHHHHHHhhcc------------------------ccCChHHHHHHHHHhcccCCCchh
Q 018172 187 KCTGHAGSRIGWALVKDTEVARKMTRFIELGS------------------------IGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 187 K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~------------------------~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
|..+++|.|+||++++++++++.+........ ...+.+...++...+ .
T Consensus 186 k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l--------~ 257 (393)
T 1mdo_A 186 AIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL--------Q 257 (393)
T ss_dssp TTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH--------H
T ss_pred CCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHH--------H
Confidence 43334456899999855889998876543211 012333322222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc------hHHHHHHHHhhCeeeeCC
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE------DEDCEKLLRAERIMARGG 316 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~gI~~~pg 316 (360)
.+++..++.+++++++.+.|++++ +.+..+... .....+.++|+.+++ .+.+.+.|.++||.+++|
T Consensus 258 ~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~ 329 (393)
T 1mdo_A 258 KLDALNARRAAIAAQYHQAMADLP-FQPLSLPSW-------EHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLH 329 (393)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSS-------CEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCC-------CCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccc
Confidence 345566666778888899998876 443321100 001223367888763 377888888999999997
Q ss_pred CCC--------------CC------CCCeEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 317 RRF--------------GA------DAKYARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 317 ~~f--------------~~------~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
..+ .. ..+++|+++.. ++|++++++++|++++...
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 330 FRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp CCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred cCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 643 11 13479999964 9999999999999988764
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=222.06 Aligned_cols=287 Identities=10% Similarity=0.024 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH----HHHHhCCeeee-
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA----ETDYLRSGLYK- 113 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~----~~~~~g~~~~~- 113 (360)
.++++.++++++. ++++|++|+|+++++++++.+++++|+. +.+|+++.|+|++... .++..|++++.
T Consensus 114 ~~l~~~la~~~g~------~~~~v~~t~g~t~al~~~~~~~~~~~~~-~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~ 186 (465)
T 3e9k_A 114 ESIVGLMKDIVGA------NEKEIALMNALTVNLHLLMLSFFKPTPK-RYKILLEAKAFPSDHYAIESQLQLHGLNIEES 186 (465)
T ss_dssp HHHHGGGHHHHTC------CGGGEEECSCHHHHHHHHHHHHCCCCSS-SCEEEEETTCCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHcCC------CcCCEEEECCHHHHHHHHHHHhccccCC-CCEEEEcCCcCCchHHHHHHHHHHcCCcceee
Confidence 6788999999886 5579999999999999999999877653 3459999999998544 56667888632
Q ss_pred ---e-cCC------cccccc--C---CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCC
Q 018172 114 ---W-DGD------ANTFDK--N---NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAAD 177 (360)
Q Consensus 114 ---~-~~~------~~~~~~--~---~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~ 177 (360)
+ +.+ .+.+.. + +++++|++++||||||.+++ +.+.++|+++|+++|+|++|+.+..+......+
T Consensus 187 ~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~ 266 (465)
T 3e9k_A 187 MRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWG 266 (465)
T ss_dssp EEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHT
T ss_pred eEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcC
Confidence 2 322 222221 1 57999999999999999998 678888999999999999998655443333456
Q ss_pred ccEEEeccccccC-CCCceEEEEeecCHHHHHHHHHHHh-------------------------hccccCChHHHHHHHH
Q 018172 178 HDIMLFTLSKCTG-HAGSRIGWALVKDTEVARKMTRFIE-------------------------LGSIGVSKESQLRAAK 231 (360)
Q Consensus 178 ~~i~~~S~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~~~~~~~~~~ 231 (360)
.+++++|++|.+. .|+ ++|++++ ++++.+.+..... +...+.+.....++.+
T Consensus 267 ~D~~~~s~~K~l~~gp~-~~g~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~a 344 (465)
T 3e9k_A 267 VDFACWCSYKYLNAGAG-GIAGAFI-HEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHA 344 (465)
T ss_dssp CCEEEECSSSTTCCCTT-CCCEEEE-CGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHH
T ss_pred CCEEEECcccccccCCC-ceEEEEE-cHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHH
Confidence 7899999999993 243 6899988 6776554431110 0111455566666666
Q ss_pred HhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc----------CCcccCCCCCcccccccccCCCCCCcccccCCch-H
Q 018172 232 ILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS----------GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-E 300 (360)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 300 (360)
+++.+.. ..+++++++++++++++.+.|+++ +++.+..|... ...++++++.++.. .
T Consensus 345 al~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~---------~~~g~~~~~~~~~~~~ 412 (465)
T 3e9k_A 345 SLEIFKQ---ATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHV---------EERGCQLTITFSVPNK 412 (465)
T ss_dssp HHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSG---------GGBCSCEEEEECCTTC
T ss_pred HHHHHHH---cCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCH---------hhcccEEEEEecCCHH
Confidence 6664421 348899999999999999999885 45555544310 01244677777633 6
Q ss_pred HHHHHHHhhCeeeeCCCCCCCCCCeEEEEec-C--ChHHHHHHHHHHHHHHhch
Q 018172 301 DCEKLLRAERIMARGGRRFGADAKYARVSML-S--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 301 ~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~-~--~~e~~~~~~~~l~~~~~~~ 351 (360)
.+.+.|.++||.++. . .++++|+|+. . +++++++++++|++++++.
T Consensus 413 ~l~~~L~~~Gi~v~~----~-~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 413 DVFQELEKRGVVCDK----R-NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp CHHHHHHTTTEECEE----E-TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHCCEEEec----C-CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 777888889999873 2 3679999972 3 8999999999999999764
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=215.48 Aligned_cols=273 Identities=11% Similarity=0.068 Sum_probs=195.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC------CC-CCCCceEEEeCCCCCCc-HHHHHHhCC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS------PG-GPEPISVVSAAPYYSQY-PAETDYLRS 109 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~------~g-d~~~~~vl~~~p~~~~~-~~~~~~~g~ 109 (360)
..++++.++++++ . +++++|+|+++++..++..+.. +| +. |++++|+|... ...+...|.
T Consensus 84 ~~~l~~~la~~~g-------~-~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~----vi~~~~~yh~~~~~~~~~~g~ 151 (397)
T 2ord_A 84 QMELAELLSKNTF-------G-GKVFFANTGTEANEAAIKIARKYGKKKSEKKYR----ILSAHNSFHGRTLGSLTATGQ 151 (397)
T ss_dssp HHHHHHHHHHTTT-------S-CEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCE----EEEEBTCCCCSSHHHHHHSBC
T ss_pred HHHHHHHHHHhcC-------C-CeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCce----EEEEcCCcCCCchhhhhccCC
Confidence 3777778877776 3 4899999999999999988863 44 55 99999999665 447777787
Q ss_pred e------------eeeecC-Ccccccc--CCCeeEEEEcCCCCCCcc-cch----HHHHHHhhhcCcEEEEeecccCCCC
Q 018172 110 G------------LYKWDG-DANTFDK--NNGAYIEVVNSPNNPDGT-IRE----AVLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 110 ~------------~~~~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~-~~~----~~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
+ ++.++. |.+.++. ++++++|++++|+||||. +++ +.+.++|+++|+++|+||+|.+...
T Consensus 152 ~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~ 231 (397)
T 2ord_A 152 PKYQKPFEPLVPGFEYFEFNNVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGR 231 (397)
T ss_dssp HHHHGGGCSCCTTEEEECTTCHHHHHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred hhhccccCCCCCCeeEecCCCHHHHHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCcc
Confidence 6 666653 3344432 467999999999999999 666 4567788889999999999984221
Q ss_pred C--cCC-C--CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHH
Q 018172 170 T--PIT-G--AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFF 244 (360)
Q Consensus 170 ~--~~~-~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (360)
. ... . ....+++ ||||.++ +|+|+||+++ +++++ .+.......+++.+++.|.++.++++.+..
T Consensus 232 ~g~~~~~~~~~~~~d~~--s~sK~~~-~G~r~G~~~~-~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~------ 300 (397)
T 2ord_A 232 TGKLFAYQKYGVVPDVL--TTAKGLG-GGVPIGAVIV-NERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTK------ 300 (397)
T ss_dssp TSSSSHHHHHTCCCSEE--EECGGGG-TTSCCEEEEE-CSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTS------
T ss_pred CccchhhhhhCCCCCee--eeccccC-CCcCeEEEEE-chHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHh------
Confidence 1 110 0 1112333 8899999 8999999999 55565 554323345667889999999888875432
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-CcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCCCCC
Q 018172 245 EYGRRLMSERWNMLRQVIRQSG-VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGGRRFG 320 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~~f~ 320 (360)
++.+++++++++++.+.|++++ ++.... ...+.++|+|+++++ ...+.+.|.++||.+.||.
T Consensus 301 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----------~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~--- 366 (397)
T 2ord_A 301 EGFLEEVEEKGNYLMKKLQEMKEEYDVVA-----------DVRGMGLMIGIQFREEVSNREVATKCFENKLLVVPAG--- 366 (397)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCTTEE-----------EEEEETTEEEEEECTTSCHHHHHHHHHHTTEECEEET---
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCceE-----------EEEEEeEEEEEEECChHHHHHHHHHHHHCCCEEccCC---
Confidence 3567788888888888887752 111100 001234467777764 3667777878999999963
Q ss_pred CCCCeEEEEec--CChHHHHHHHHHHHHHHh
Q 018172 321 ADAKYARVSML--SREEIFNIFLERLSAIQG 349 (360)
Q Consensus 321 ~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~ 349 (360)
++++|+++. .++|++++++++|+++++
T Consensus 367 --~~~iRis~~~~~~~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 367 --NNTIRFLPPLTVEYGEIDLAVETLKKVLQ 395 (397)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEECCcCCCHHHHHHHHHHHHHHHh
Confidence 579999954 499999999999999875
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-26 Score=213.07 Aligned_cols=277 Identities=13% Similarity=0.073 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc-------CCCCCCCceEEEeCCCCCCcHHHHHHhC---
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS-------SPGGPEPISVVSAAPYYSQYPAETDYLR--- 108 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~-------~~gd~~~~~vl~~~p~~~~~~~~~~~~g--- 108 (360)
.++++.++++++ . ++|++|+|+++++..++..+. .+++. |++.+|+|..+...+...+
T Consensus 81 ~~l~~~la~~~~-------~-~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~----vi~~~~~yhg~~~~~~~~~~~~ 148 (395)
T 3nx3_A 81 AAAAKNLAKASA-------L-ERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQ----FIAFKHSFHGRTLGALSLTANE 148 (395)
T ss_dssp HHHHHHHHHHHT-------C-SEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCE----EEEETTCCCCSSHHHHTTCCCH
T ss_pred HHHHHHHHHhcC-------C-CeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCE----EEEEcCCcCCCCHHHHhhcCCc
Confidence 667777777665 3 589999999999999988775 34565 9999999988765544433
Q ss_pred ----------CeeeeecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCC
Q 018172 109 ----------SGLYKWDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYT 170 (360)
Q Consensus 109 ----------~~~~~~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~ 170 (360)
.++..++. |.+.++. ++++++|++..++|++|...+ +.+.++|+++|+++|+||+|.+....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~ 228 (395)
T 3nx3_A 149 KYQKPFKPLISGVKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRS 228 (395)
T ss_dssp HHHGGGCSCCSCEEEECTTCHHHHHTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred ccccccCCCCCCcEEeCCCCHHHHHHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcC
Confidence 23444443 3333333 367889988888888888754 45678899999999999999843211
Q ss_pred c--C-CCCCCccEEEeccccccCCCCceEEEEeecCHHH-HHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHH
Q 018172 171 P--I-TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEV-ARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEY 246 (360)
Q Consensus 171 ~--~-~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 246 (360)
. . ....+....+.|+||.++ .|+|+||+++ ++++ ++.+.......+++.|++++.++.++++.+.+. .+.++
T Consensus 229 g~~~~~~~~~~~~d~~t~sK~~~-~G~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~--~~~~~ 304 (395)
T 3nx3_A 229 GKFFAYEHAQILPDIMTSAKALG-CGLSVGAFVI-NQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEE--KILEN 304 (395)
T ss_dssp SSSSGGGGGTCCCSEEEECGGGT-TTSCCEEEEE-CHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHT--THHHH
T ss_pred CcchhHHhcCCCCCEEEeccccc-CCCceEEEEE-chhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhh--HHHHH
Confidence 1 1 112222333568899999 5999999999 7888 888766554567788999999999888754322 55566
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCCCCCCCC
Q 018172 247 GRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGGRRFGADA 323 (360)
Q Consensus 247 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~~f~~~~ 323 (360)
.++..+..++.+.+.+..++.+... .+.++|+|+.+++ ...+.+.|.++||.++|+. +
T Consensus 305 ~~~~~~~~~~~l~~~~~~~~~~~~~--------------~~~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~ 365 (395)
T 3nx3_A 305 VNKLTPYLEQSLDELINEFDFCKKR--------------KGLGFMQGLSLDKSVKVAKVIQKCQENALLLISCG-----E 365 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEEEE--------------EEETTEEEEEECTTSCHHHHHHHHHHTTEECEEET-----T
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEE--------------EeEEEEEEEEeCCcchHHHHHHHHHHCCCEEecCC-----C
Confidence 6665555566666655555432221 1334477777765 2677788889999999863 6
Q ss_pred CeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 324 KYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 324 ~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
+++||++.. ++|++++++++|++++++
T Consensus 366 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 366 NDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 799998543 999999999999998864
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-25 Score=208.18 Aligned_cols=286 Identities=12% Similarity=0.072 Sum_probs=196.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH----HHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET----DYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~~~~ 113 (360)
..++|++++++++. + ++++++|++++++.++.+++++||+ |+++.|.|.+....+ +..|++++.
T Consensus 84 ~~~le~~lA~l~g~-------~-~~i~~ssGt~Ai~~al~~l~~~Gd~----Vi~~~~~y~~~~~~~~~~l~~~G~~v~~ 151 (415)
T 2fq6_A 84 HFSLQQAMCELEGG-------A-GCVLFPCGAAAVANSILAFIEQGDH----VLMTNTAYEPSQDFCSKILSKLGVTTSW 151 (415)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESSHHHHHHHHHHTTCCTTCE----EEEETTSCHHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC-------C-eEEEeCCHHHHHHHHHHHHhCCCCE----EEEeCCCchHHHHHHHHHHHHcCcEEEE
Confidence 37899999999984 3 4667788899999999999999998 999999999887654 456999998
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhh--cCcEEEEeecccCCC-CCcCCCCCCccEEEeccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRS--AEGKLIHDLAYYWPQ-YTPITGAADHDIMLFTLS 186 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~--~~~~li~D~ay~~~~-~~~~~~~~~~~i~~~S~s 186 (360)
++.+ .+.++. +++|++|++++|+||||.+++ +.+.++|++ +|+++|+|++|..+. ..++ ..+.+++++|+|
T Consensus 152 v~~~d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~--~~g~Div~~S~s 229 (415)
T 2fq6_A 152 FDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL--DFGIDVSIQAAT 229 (415)
T ss_dssp ECTTCGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG--GGTCSEEEEETT
T ss_pred ECCCCHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc--ccCCeEEEEeCc
Confidence 8753 455544 567999999999999999998 788899999 999999999998542 1222 356789999999
Q ss_pred cccCCCCce-EEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 018172 187 KCTGHAGSR-IGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS 265 (360)
Q Consensus 187 K~~~~~G~r-~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (360)
|.++.+|.+ +||+++ ++++++.+.......+...++....++...+ +.+....++..++.+.+.+.|.++
T Consensus 230 K~lg~~g~~~~G~l~~-~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l--------~~l~~r~~~~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 230 KYLVGHSDAMIGTAVC-NARCWEQLRENAYLMGQMVDADTAYITSRGL--------RTLGVRLRQHHESSLKVAEWLAEH 300 (415)
T ss_dssp TTTTCSSSCCCEEEEE-CTTTHHHHHHHHHHTTCCCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccCCCCCceEEEEEe-CHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999988765 589888 6678888876655434444554444333333 334445555677778888888887
Q ss_pred CCcccCCCCCcc----cccccccCCCCCCcccccCCc---hHHHHHHHHhh---CeeeeCCCC-----------------
Q 018172 266 GVFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAE---RIMARGGRR----------------- 318 (360)
Q Consensus 266 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~---gI~~~pg~~----------------- 318 (360)
+.+.....++.. +........+.+..+++.+++ .+.....+.+- ++.+..|+.
T Consensus 301 ~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~ 380 (415)
T 2fq6_A 301 PQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRP 380 (415)
T ss_dssp TTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCT
T ss_pred CCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccc
Confidence 543322111100 000000012345677888876 34455555444 344444421
Q ss_pred ---CCCCCCeEEEEecC--ChHHHHHHHHHHHH
Q 018172 319 ---FGADAKYARVSMLS--REEIFNIFLERLSA 346 (360)
Q Consensus 319 ---f~~~~~~~R~s~~~--~~e~~~~~~~~l~~ 346 (360)
.+..++.+|||++. ++++++.+.++|++
T Consensus 381 ~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 381 QGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp TCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred hhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 33345799999977 56667777776653
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=210.12 Aligned_cols=286 Identities=18% Similarity=0.101 Sum_probs=202.0
Q ss_pred cccC-CCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 26 YLSD-MGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 26 ~y~~-~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
.|++ ..+. .++|++++++++. +++++|+|+++++..++..+. +||+ |+++.|+|..+...+
T Consensus 46 ~y~~~~~~~-----~~l~~~la~~~~~--------~~v~~~~ggt~al~~~l~~l~-~gd~----Vlv~~~~~~~~~~~~ 107 (424)
T 2po3_A 46 WLSNGGPLV-----REFEERVAGLAGV--------RHAVATCNATAGLQLLAHAAG-LTGE----VIMPSMTFAATPHAL 107 (424)
T ss_dssp CCSSSCHHH-----HHHHHHHHHHHTS--------SEEEEESCHHHHHHHHHHHHT-CCSE----EEEESSSCTHHHHHH
T ss_pred CcccCCHHH-----HHHHHHHHHHhCC--------CeEEEeCCHHHHHHHHHHHcC-CCCE----EEECCCccHHHHHHH
Confidence 4665 5665 9999999999984 489999999999999999985 6777 999999999999999
Q ss_pred HHhCCeeeeecCCccccc-------c--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-C--Cc
Q 018172 105 DYLRSGLYKWDGDANTFD-------K--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ-Y--TP 171 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~-------~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~-~--~~ 171 (360)
...|++++.++.+.+++. . ++++++|+++ ||||...+ +.+.++|+++|+++|+|++|..+. + .+
T Consensus 108 ~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~ 184 (424)
T 2po3_A 108 RWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRP 184 (424)
T ss_dssp HHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEE
T ss_pred HHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCee
Confidence 999999999987653221 1 3578998875 48999877 678888888999999999998422 1 11
Q ss_pred CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhcccc---------CChHHHHHHHHHhcccCCCchh
Q 018172 172 ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIG---------VSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 172 ~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
+ ... .++++.||||..+++|.|+||++++++++++.+.........+ ...+.+.+++.++.. ..
T Consensus 185 ~-~~~-~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-----~~ 257 (424)
T 2po3_A 185 A-GSL-GDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS-----LD 257 (424)
T ss_dssp T-TSS-SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH-----HH
T ss_pred c-ccc-cCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH-----HH
Confidence 1 111 2499999996666677899999994489999888765432111 001223333333331 15
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCC-CCCcccccccccCCCCCCcccccCCc------hHHHHHHHHhhCeeeeC
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPE-YPLEYCNFTGKFTNSHPGFAWLESKE------DEDCEKLLRAERIMARG 315 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~gI~~~p 315 (360)
.+++..++.+++++++.+.|++++++.+.. +.++...| .++++.+++ .+.+.+.|.++||.+++
T Consensus 258 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~ 328 (424)
T 2po3_A 258 AFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNH---------QYVIVEIDEATTGIHRDLVMEVLKAEGVHTRA 328 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCC---------CCEEEEECHHHHSSCHHHHHHHHHHTTEECBC
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcccc---------EEEEEEECCccchhhHHHHHHHHHHCCCceec
Confidence 566777778888888888888776665544 33322111 123355552 36778888999999987
Q ss_pred CCCCCC---------------CCCe-------EEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 316 GRRFGA---------------DAKY-------ARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 316 g~~f~~---------------~~~~-------~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
. |.. .++. +|+++.. ++|++++++++|.+++++
T Consensus 329 ~--~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~ 385 (424)
T 2po3_A 329 Y--FSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATR 385 (424)
T ss_dssp T--TCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHH
T ss_pred c--cCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 2 210 0122 6666323 899999999999998864
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=208.24 Aligned_cols=284 Identities=10% Similarity=-0.029 Sum_probs=194.0
Q ss_pred ccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH--H
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA--E 103 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~--~ 103 (360)
|....|. .++++++++++.. .| . ++++|++|+|+++++..++..+.++||+ |++++|+|..+.. .
T Consensus 41 ~~~~~g~-----~~~~~~~~~~l~~~~g--~-~~~~v~~~~g~t~a~~~~~~~~~~~gd~----vl~~~~~~~~~~~~~~ 108 (359)
T 1svv_A 41 QHAGYGQ-----DSHCAKAARLIGELLE--R-PDADVHFISGGTQTNLIACSLALRPWEA----VIATQLGHISTHETGA 108 (359)
T ss_dssp CCCSTTC-----SHHHHHHHHHHHHHHT--C-TTSEEEEESCHHHHHHHHHHHHCCTTEE----EEEETTSHHHHSSTTH
T ss_pred ccccccc-----cHHHHHHHHHHHHHhC--C-CCccEEEeCCchHHHHHHHHHHhCCCCE----EEEcccchHHHHHHHH
Confidence 5555554 5555555554322 12 1 4568999999999999999999999988 9999999999887 4
Q ss_pred HHHhCCeeeeecCCcccccc-------CC-------CeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeeccc
Q 018172 104 TDYLRSGLYKWDGDANTFDK-------NN-------GAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYY 165 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~-------~~-------~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~ 165 (360)
++..|.+++.++.+...++. ++ ++++|++++| ||||.+++ +.+.++|+++|+++|+|++|.
T Consensus 109 ~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~ 187 (359)
T 1svv_A 109 IEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARL 187 (359)
T ss_dssp HHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTH
T ss_pred HhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccch
Confidence 78889999999876322221 12 3899999999 79999987 346678888999999999993
Q ss_pred C---CCCCcCCCC----CCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccc--cCChHHHHHHHHHhccc
Q 018172 166 W---PQYTPITGA----ADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI--GVSKESQLRAAKILGIV 236 (360)
Q Consensus 166 ~---~~~~~~~~~----~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~ 236 (360)
+ +........ ...++++.|++|..+ ..++|+++. ++++++.+......... +.+.....++.++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~--~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 262 (359)
T 1svv_A 188 ASALSSPVNDLTLADIARLTDMFYIGATKAGG--MFGEALIIL-NDALKPNARHLIKQRGALMAKGWLLGIQFEVLMK-- 262 (359)
T ss_dssp HHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC--SSCEEEEEC-SGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTS--
T ss_pred hhhhcCCCcchhhhhhhhcCCEEEEecccCCC--CCceEEEEE-cccHHHHHHHHHhcCCcccccchhhHHHHHHHHh--
Confidence 2 222111110 234688899999754 345899988 78887777654321211 222223333333343
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhh-CeeeeC
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAE-RIMARG 315 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gI~~~p 315 (360)
. ..+++.+++++++++++.+.| +.+++.+..+.++ +|+|++++ ..+.+.|.++ ||.+.+
T Consensus 263 -~---~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~-------------~~~~~~~~--~~~~~~l~~~~gi~v~~ 322 (359)
T 1svv_A 263 -D---NLFFELGAHSNKMAAILKAGL-EACGIRLAWPSAS-------------NQLFPILE--NTMIAELNNDFDMYTVE 322 (359)
T ss_dssp -T---THHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSS-------------SEECBEEE--HHHHHHHTTTEECEEEE
T ss_pred -h---hhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCcc-------------ceEEEEcC--HHHHHHHHHhcCEEEEe
Confidence 2 456788999999999999999 5556665544433 36777665 4556666677 999832
Q ss_pred CCCCCCCCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 316 GRRFGADAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 316 g~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
.. ...++++|++++. +++++++++++|++++++
T Consensus 323 ~~--~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 323 PL--KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp EE--TTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred cc--cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 11 1235689998753 899999999999988754
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-25 Score=204.22 Aligned_cols=281 Identities=13% Similarity=0.022 Sum_probs=200.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh---cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL---SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKW 114 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l---~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~ 114 (360)
..++|++++++++. + ++++|+|+++++..++..+ +++||+ |+++.|+|..+...+...|++++.+
T Consensus 34 ~~~l~~~la~~~~~-------~-~v~~~~ggt~al~~~~~~~~~~~~~gd~----Vl~~~~~~~~~~~~~~~~g~~~~~~ 101 (375)
T 2fnu_A 34 SLLFEEALCEFLGV-------K-HALVFNSATSALLTLYRNFSEFSADRNE----IITTPISFVATANMLLESGYTPVFA 101 (375)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHSSCCCTTSCE----EEECSSSCTHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHhCC-------C-eEEEeCCHHHHHHHHHHHhcccCCCCCE----EEECCCccHhHHHHHHHCCCEEEEe
Confidence 39999999999985 2 8999999999999999999 888988 9999999999999999999999988
Q ss_pred cCCcc------cccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcC--CCCCCccEEEe
Q 018172 115 DGDAN------TFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPI--TGAADHDIMLF 183 (360)
Q Consensus 115 ~~~~~------~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~--~~~~~~~i~~~ 183 (360)
+.+.+ .+.. ++++++|++++| ||.+.+ +.+.++|+++|+++|+|++|..+..... .+..+ ++.+.
T Consensus 102 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~-~i~~~ 177 (375)
T 2fnu_A 102 GIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFA-LASVF 177 (375)
T ss_dssp CBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSS-SEEEE
T ss_pred ccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccC-CeEEE
Confidence 87543 2222 357888887766 999988 7788889889999999999986533211 12222 57888
Q ss_pred ccc--cccCCCCceEEEEee-cCHHHHHHHHHHHhhcc------------ccCC-hHHHHHHHHHhcccCCCchhHHHHH
Q 018172 184 TLS--KCTGHAGSRIGWALV-KDTEVARKMTRFIELGS------------IGVS-KESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 184 S~s--K~~~~~G~r~G~~~~-~~~~~~~~l~~~~~~~~------------~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
|+| |.+++ | +|++++ +++++++.+........ .+.+ ...+..++..+.. ...+++.
T Consensus 178 s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-----~~~~~~~ 249 (375)
T 2fnu_A 178 SFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQ-----LKKAPFL 249 (375)
T ss_dssp ECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHH-----HTTHHHH
T ss_pred eCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHH-----HHHHHHH
Confidence 888 99984 6 677776 35888888877653221 1111 1222222222221 1456788
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCC-CcccccccccCCCCCCcccccCC-----chHHHHHHHHhhCeeeeCC----C
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYP-LEYCNFTGKFTNSHPGFAWLESK-----EDEDCEKLLRAERIMARGG----R 317 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gI~~~pg----~ 317 (360)
.++++++++++.+.|++++++.+..+. +.. ....++++.++ +...+.+.|.++||.++.+ .
T Consensus 250 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~ 320 (375)
T 2fnu_A 250 MQKREEAALTYDRIFKDNPYFTPLHPLLKDK---------SSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIY 320 (375)
T ss_dssp HHHHHHHHHHHHHHHTTCSSEEESGGGCSSC---------CCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGG
T ss_pred HHHHHHHHHHHHHHhhcCCCccccCCCCCCC---------cceEEEEEEeCccccchHHHHHHHHHHCCCCccccccccc
Confidence 888999999999999998666554331 100 11123455555 2367778888999999832 1
Q ss_pred ---CCC-------C------CCCeEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 318 ---RFG-------A------DAKYARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 318 ---~f~-------~------~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
.|+ . ..+++|+++.. ++|++++++++|++++++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 321 QYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp GSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 111 0 02689999975 8999999999999998653
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=216.65 Aligned_cols=284 Identities=10% Similarity=0.027 Sum_probs=202.0
Q ss_pred HHHHHHH----HHHHhhcCCCCCCCCcE--EEcCChHHHHHHHHHhhcCCC--------CCCCceEEEeCCCCCCcHHHH
Q 018172 39 PELAEAI----NNLHHVVDNAVSDGRHI--VIGTGSTQLYQAALYALSSPG--------GPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 39 ~~lr~~l----a~~~~~~~~~~~~~~~i--~~t~G~t~~l~~~~~~l~~~g--------d~~~~~vl~~~p~~~~~~~~~ 104 (360)
.++++.+ +++++. +.++ +++ ++|+|+++++..++..+.++| |+ |+++.|+|..+...+
T Consensus 138 ~~le~~l~~~la~~~g~---~~~~-~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~----Vi~~~~~~~~~~~~~ 209 (514)
T 3mad_A 138 AKFEAEVVAMTAHMLGG---DAAG-GTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPE----AVVPVSAHAAFDKAA 209 (514)
T ss_dssp HHHHHHHHHHHHHHTTG---GGGT-SCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCE----EEEETTSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC---CCcc-CCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCe----EEEeCccchHHHHHH
Confidence 4555555 444443 2211 367 999999999999999998766 66 999999999999999
Q ss_pred HHhCCeeeeecCCcc------cccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC------
Q 018172 105 DYLRSGLYKWDGDAN------TFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY------ 169 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~------~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~------ 169 (360)
+..|++++.++.+.+ .++. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|++...
T Consensus 210 ~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~ 289 (514)
T 3mad_A 210 QYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERL 289 (514)
T ss_dssp HHHTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHT
T ss_pred HHcCCeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhc
Confidence 999999999987642 2221 468999999999999999988 7788899999999999999985321
Q ss_pred ----CcC-CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh----------ccccCChHHHHHHHHHhc
Q 018172 170 ----TPI-TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL----------GSIGVSKESQLRAAKILG 234 (360)
Q Consensus 170 ----~~~-~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~l~ 234 (360)
+++ ....+.++++.|++|.++ .|.++|+++++++.+.+........ ...+.+.....++.+++.
T Consensus 290 g~~~~~~~~~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~ 368 (514)
T 3mad_A 290 GYPVPPFDFRLEGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAML 368 (514)
T ss_dssp TCCCCCCSTTSTTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHH
T ss_pred CCCCCcccccCCCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHH
Confidence 122 134566899999999865 6788999998555443321100000 011223332333333343
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCee
Q 018172 235 IVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIM 312 (360)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~ 312 (360)
.+. ...+++..++++++++++.+.|++++++.+..+.. +++++..++ ...+.+.|.++||.
T Consensus 369 ~l~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~--------------~~~~~~~~~~~~~~l~~~L~~~Gi~ 431 (514)
T 3mad_A 369 SLG---EEGYLDATRRILQAADRLKAGVRAIPSLKILGDPL--------------WVIAVASDELNIYQVMEEMAGRGWR 431 (514)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCS--------------SEEEEECSSSCHHHHHHHHHTTTCB
T ss_pred HHh---HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCe--------------EEEEEeCCCCCHHHHHHHHHhcCCE
Confidence 322 26678889999999999999999987666554332 145565543 27788888899998
Q ss_pred eeCCCCCCCCCCeEEEEecC---ChHHHHHHHHHHHHHHhchh
Q 018172 313 ARGGRRFGADAKYARVSMLS---REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 313 ~~pg~~f~~~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~~ 352 (360)
+ +|..| ++++|+++.. ++|++++++++|++++++.+
T Consensus 432 v-~g~~~---~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~ 470 (514)
T 3mad_A 432 L-NGLHR---PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVR 470 (514)
T ss_dssp C-EEETT---TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHH
T ss_pred e-ccCCC---CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8 54433 4589999863 67999999999999997654
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=208.03 Aligned_cols=284 Identities=10% Similarity=-0.020 Sum_probs=190.3
Q ss_pred cccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH---H
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP---A 102 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~---~ 102 (360)
.|.+..+. .+||++++++++. +.. ++++|+++++..++..++++||.+ .|+++.+.|.... .
T Consensus 43 ~~~~~~~~-----~~l~~~la~~~~~-------~~~-i~~~~g~~a~~~a~~~~~~~g~~~--vvi~~~~~~~~~~~~~~ 107 (359)
T 3pj0_A 43 IYGNGAVI-----EDFETKIAKILGK-------QSA-VFFPSGTMAQQIALRIWADRKENR--RVAYHPLSHLEIHEQDG 107 (359)
T ss_dssp BTTBSHHH-----HHHHHHHHHHHTC-------SEE-EEESCHHHHHHHHHHHHHHHHTCC--EEEECTTCHHHHSSTTH
T ss_pred cccCCHHH-----HHHHHHHHHHhCC-------CcE-EEeCCHHHHHHHHHHHHHhcCCCc--EEEEeccceeeehhcch
Confidence 45555555 9999999999984 334 455777899999999998887741 1444545443322 2
Q ss_pred HHHHhCCeeeeecCCcccccc------CCCeeEEEEcCCCCCC-cccch-H---HHHHHhhhcCcEEEEeecccCCC---
Q 018172 103 ETDYLRSGLYKWDGDANTFDK------NNGAYIEVVNSPNNPD-GTIRE-A---VLAKVNRSAEGKLIHDLAYYWPQ--- 168 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~~~~~------~~~~~~i~~~~p~NPt-G~~~~-~---~~~~~~~~~~~~li~D~ay~~~~--- 168 (360)
.....|.+++.++.+...++. .+++++|++++||||| |.+++ + .+.++|+++|+++|+|++|....
T Consensus 108 ~~~~~g~~~~~v~~~~~~~d~~~l~~~~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~ 187 (359)
T 3pj0_A 108 LKELQQITPLLLGTANQLLTIDDIKSLREPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPF 187 (359)
T ss_dssp HHHHHCCEEEECSCTTSCCCHHHHHTCSSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHH
T ss_pred HHHhcCceEEecCCcCCCcCHHHHHhccCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhh
Confidence 235579999988764322221 4678999999999998 68887 3 34778888999999999986321
Q ss_pred --CCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCC--hHHHHHHHHHhcccCCCchhHH
Q 018172 169 --YTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVS--KESQLRAAKILGIVSDDYPNFF 244 (360)
Q Consensus 169 --~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 244 (360)
.....-....++++.|+||.++.++ + ||++. ++++++.+...+...+.+.+ ...+.++...++ ...
T Consensus 188 ~~~~~~~~~~~~d~~~~s~sK~~~~~~-g-g~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-------~~~ 257 (359)
T 3pj0_A 188 YQKSAEEICALFDSVYVSFYKGIGGIA-G-AILAG-NDDFVQEAKIWKRRYGGDLISLYPYILSADYYFE-------KRI 257 (359)
T ss_dssp HTCCHHHHHTTCSEEEEESSSTTCCSS-C-EEEEE-CHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHH-------HHG
T ss_pred hCCCHHHhhccCCEEEEeccccCCCcc-e-EEEEC-CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH-------HHH
Confidence 1110001234567789999887553 2 77777 89999999876543333332 233333333333 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccC-CCCCcccccccccCCCCCCcccccCCc-----hHHHHHHHHhhCeeeeCCCC
Q 018172 245 EYGRRLMSERWNMLRQVIRQSGVFGLP-EYPLEYCNFTGKFTNSHPGFAWLESKE-----DEDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gI~~~pg~~ 318 (360)
+. .+++.++++++.+.|++++++.+. .+. .++|+|++++. .+.+.+.|.++||.++||..
T Consensus 258 ~~-~~~~~~~~~~l~~~L~~~~g~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~ 323 (359)
T 3pj0_A 258 GK-MAEYFEAAKGLAERFNSCSGVKTVPEVP-------------VSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQ 323 (359)
T ss_dssp GG-HHHHHHHHHHHHHHHHTSTTEEEESSSC-------------SSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCE
T ss_pred HH-hHHHHHHHHHHHHHHhhCCCceeeccCC-------------cceEEEEEecCccchhHHHHHHHHHhcCcEecCCcc
Confidence 33 334678888999999998766652 333 23366666542 26788889999999999987
Q ss_pred CCC-CCCeEEEEec-----CChHHHHHHHHHHHHHH
Q 018172 319 FGA-DAKYARVSML-----SREEIFNIFLERLSAIQ 348 (360)
Q Consensus 319 f~~-~~~~~R~s~~-----~~~e~~~~~~~~l~~~~ 348 (360)
|+. ..+++|+++. .+.|++++++++|.+.+
T Consensus 324 ~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~l 359 (359)
T 3pj0_A 324 EKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKEL 359 (359)
T ss_dssp EEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred ccCCCceEEEEEecCccccCCHHHHHHHHHHHHhcC
Confidence 753 3568999885 37899999999988753
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=208.69 Aligned_cols=278 Identities=14% Similarity=0.106 Sum_probs=194.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH-H--HHHhC--Ceeeeec
Q 018172 41 LAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA-E--TDYLR--SGLYKWD 115 (360)
Q Consensus 41 lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~-~--~~~~g--~~~~~~~ 115 (360)
+|+.++++++. +.+.+++++| ++++..++..++++||. |+++.|+|+.+.. . +...| .+++.++
T Consensus 74 ~r~~la~~~g~------~~~~i~~~sG-t~a~~~a~~~~~~~gd~----Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 142 (405)
T 2vi8_A 74 ARERAKQLFGA------EHANVQPHSG-AQANMAVYFTVLEHGDT----VLGMNLSHGGHLTHGSPVNFSGVQYNFVAYG 142 (405)
T ss_dssp HHHHHHHHHTC------SEEECCCSSH-HHHHHHHHHHHCCTTCE----EEEECGGGTCCTTTTCTTSHHHHHSEEEEEC
T ss_pred HHHHHHHHhCC------CceEEEecCc-HHHHHHHHHHhcCCCCE----EEEecccccchhcccchhhhccceeEEEecc
Confidence 34688888875 3333445666 99999999999999998 9999999998854 2 12334 4777776
Q ss_pred CCccc-------ccc--CC-CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCC----CCCcCCCCCCccE
Q 018172 116 GDANT-------FDK--NN-GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWP----QYTPITGAADHDI 180 (360)
Q Consensus 116 ~~~~~-------~~~--~~-~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~----~~~~~~~~~~~~i 180 (360)
++.+. +.. ++ ++++|++ +|+|+ |...+ +.+.++|+++|+++|+|++|..+ ..... .....++
T Consensus 143 ~~~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-~~~~~di 219 (405)
T 2vi8_A 143 VDPETHVIDYDDVREKARLHRPKLIVA-AAAAY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPN-PVPYAHF 219 (405)
T ss_dssp BCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC-STTTCSE
T ss_pred cccccCCcCHHHHHHHHHhcCCeEEEE-eCCCC-CccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCC-ccccCCE
Confidence 54221 211 22 6788887 44443 34433 67788888899999999999831 11111 1124568
Q ss_pred EEeccccccC-CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHH-HHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTG-HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRA-AKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 181 ~~~S~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
+++|+||.++ ++| ||+++ ++++++.+.........+.+.+.+.++ .++++.... .++++.+++++++++++
T Consensus 220 ~~~s~sK~~~g~~g---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~---~~~~~~~~~~~~~~~~l 292 (405)
T 2vi8_A 220 VTTTTHKTLRGPRG---GMILC-QEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQ---DDFKAYAKRVVDNAKRL 292 (405)
T ss_dssp EEEESSSTTCCCSC---EEEEE-CHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCCCC---eEEEE-cHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHH
Confidence 9999999997 666 99998 789999888765444444433444443 456653322 67889999999999999
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeeeCCCC----CCC-CCCeEEEE
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMARGGRR----FGA-DAKYARVS 329 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~pg~~----f~~-~~~~~R~s 329 (360)
.+.|+++ ++.+..+. +.++++|+.++. ...+.+.|.++||.++||.. ++. .++++|+|
T Consensus 293 ~~~L~~~-g~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis 359 (405)
T 2vi8_A 293 ASALQNE-GFTLVSGG------------TDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIG 359 (405)
T ss_dssp HHHHHHT-TCEEGGGS------------CSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEE
T ss_pred HHHHHhC-CCeEecCC------------CCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEe
Confidence 9999988 45544332 123467887763 36677888899999999862 322 35689999
Q ss_pred ecC------ChHHHHHHHHHHHHHHhchh
Q 018172 330 MLS------REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 330 ~~~------~~e~~~~~~~~l~~~~~~~~ 352 (360)
+.. +++++++++++|++++.+..
T Consensus 360 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 360 TAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp CHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred eeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 973 79999999999999997653
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-26 Score=214.65 Aligned_cols=279 Identities=13% Similarity=0.001 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc--CCCCCCCceEEEeCCCCCCcHHHHHHh---------
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS--SPGGPEPISVVSAAPYYSQYPAETDYL--------- 107 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~--~~gd~~~~~vl~~~p~~~~~~~~~~~~--------- 107 (360)
.++++.++++++. ..++|++|+|+++++..++..+. ..++. |++.+|+|+.....+...
T Consensus 88 ~~l~~~la~~~~~------~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~----vi~~~~~yhg~~~~~~~~~~~~~~~~~ 157 (433)
T 1zod_A 88 VDLATRLANITPP------GLDRALLLSTGAESNEAAIRMAKLVTGKYE----IVGFAQSWHGMTGAAASATYSAGRKGV 157 (433)
T ss_dssp HHHHHHHHHHSCT------TCCEEEEESCHHHHHHHHHHHHHHHHTCCE----EEEETTCCCCSSHHHHHTCCSSCCSSS
T ss_pred HHHHHHHHHhCCC------CcCEEEEeCchHHHHHHHHHHHHHhhCCCe----EEEECCCcCCCChhHHhhcCCcccccc
Confidence 6777777777653 34689999999999999988653 23455 999999998765543322
Q ss_pred -----CCeeeeecC----------------Ccccccc--C----CCeeEEEEcCCCCCCcccch-----HHHHHHhhhcC
Q 018172 108 -----RSGLYKWDG----------------DANTFDK--N----NGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAE 155 (360)
Q Consensus 108 -----g~~~~~~~~----------------~~~~~~~--~----~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~ 155 (360)
|...+.++. |.+.++. + +++++|+++..+||||..++ +.+.++|+++|
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 237 (433)
T 1zod_A 158 GPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARG 237 (433)
T ss_dssp CCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHT
T ss_pred CCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC
Confidence 333333321 1122211 1 34556555433588997543 46778899999
Q ss_pred cEEEEeecccCCCC-CcC-C-CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh--ccccCChHHHHHHH
Q 018172 156 GKLIHDLAYYWPQY-TPI-T-GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL--GSIGVSKESQLRAA 230 (360)
Q Consensus 156 ~~li~D~ay~~~~~-~~~-~-~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~ 230 (360)
+++|+||+|.+... ... . ...+....+.||||.++ .|+|+||+++ ++++++.+...... .+++.|+++|.++.
T Consensus 238 ~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~-~G~~ig~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~ 315 (433)
T 1zod_A 238 MLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLG-AGLPLAAIVT-SAAIEERAHELGYLFYTTHVSDPLPAAVGL 315 (433)
T ss_dssp CEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHH-TTSSCEEEEE-CHHHHHHHHHTTCCCCCTTTTCHHHHHHHH
T ss_pred CEEEEeccccCCCcCchHhHHhhcCCCCCEEEeccccc-CCCCeeEEEE-hHHHHHhhccCCCCCCCCCCcCHHHHHHHH
Confidence 99999999984321 111 1 11111222458999999 5999999999 78999988763322 56778999999888
Q ss_pred HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc----CCcccCCCCCcccccccccCCCCCCcccccCCc--------
Q 018172 231 KILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-------- 298 (360)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 298 (360)
++++.+.+ +...++++++++++.+.|+++ +.+... ++.++|+|+++++
T Consensus 316 aal~~~~~------~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~--------------~~~g~~~~i~~~~~~~~~~~~ 375 (433)
T 1zod_A 316 RVLDVVQR------DGLVARANVMGDRLRRGLLDLMERFDCIGDV--------------RGRGLLLGVEIVKDRRTKEPA 375 (433)
T ss_dssp HHHHHHHH------TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE--------------EEETTEEEEEEEEETTTTEEC
T ss_pred HHHHHHHh------CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE--------------EEEEEEEEEEEecCccccCCC
Confidence 88874432 124455666666666666553 322111 1234466666542
Q ss_pred ---hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhc
Q 018172 299 ---DEDCEKLLRAERIMARGGRRFGADAKYARVSML--SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 299 ---~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~ 350 (360)
...+.+.|.++||.+.||..|+ .++++||+++ .+++++++++++|++++.+
T Consensus 376 ~~~~~~~~~~l~~~Gv~v~~~~~~~-~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 376 DGLGAKITRECMNLGLSMNIVQLPG-MGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp TTHHHHHHHHHHHTTEECCEECCTT-SCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCeEeccCCCC-CCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 2556677778999999988776 3579999764 4999999999999998764
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=212.79 Aligned_cols=279 Identities=10% Similarity=-0.002 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc---C----CCCCCCceEEEeCCCCCCcHHHHHHh----
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS---S----PGGPEPISVVSAAPYYSQYPAETDYL---- 107 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~---~----~gd~~~~~vl~~~p~~~~~~~~~~~~---- 107 (360)
.++++.++++++. ..++|++|+|++++++.++..+. + +|++ |++++|+|+.+...+...
T Consensus 89 ~~l~~~la~~~~~------~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~----vi~~~~~yh~~~~~~~~~~~~~ 158 (429)
T 1s0a_A 89 IELCRKLVAMTPQ------PLECVFLADSGSVAVEVAMKMALQYWQAKGEARQR----FLTFRNGYHGDTFGAMSVCDPD 158 (429)
T ss_dssp HHHHHHHHHHSCT------TCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCE----EEEETTCCCCSSHHHHTTSCTT
T ss_pred HHHHHHHHHhCCC------CCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCe----EEEECCCCCCCchhhhhhcCCc
Confidence 6677777777653 34689999999999999988653 2 5776 999999998865433221
Q ss_pred ------------CCeeeeecC----------Ccccccc--C---CCeeEEEEcCC-CCCCcccch-----HHHHHHhhhc
Q 018172 108 ------------RSGLYKWDG----------DANTFDK--N---NGAYIEVVNSP-NNPDGTIRE-----AVLAKVNRSA 154 (360)
Q Consensus 108 ------------g~~~~~~~~----------~~~~~~~--~---~~~~~i~~~~p-~NPtG~~~~-----~~~~~~~~~~ 154 (360)
+...+.++. |.+.++. + +++++|+++.. |||||..++ +.+.++|+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~ 238 (429)
T 1s0a_A 159 NSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE 238 (429)
T ss_dssp TTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHH
T ss_pred hhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHc
Confidence 233333321 1111211 1 35556655544 689997654 4567888999
Q ss_pred CcEEEEeecccCCCCC-cC--CCCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHHH-----hhccccCChHH
Q 018172 155 EGKLIHDLAYYWPQYT-PI--TGAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRFI-----ELGSIGVSKES 225 (360)
Q Consensus 155 ~~~li~D~ay~~~~~~-~~--~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~ 225 (360)
|+++|+||+|.+.... .. ....+...-+.||||.++ .| +|+||+++ ++++++.+.... ...+++.|+++
T Consensus 239 ~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~-~G~~~iG~~~~-~~~~~~~l~~~~~~~~~~~~t~~~n~~~ 316 (429)
T 1s0a_A 239 GILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALT-GGTMTLSATLT-TREVAETISNGEAGCFMHGPTFMGNPLA 316 (429)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGG-TSSSCCEEEEE-CHHHHHHHHTSTTSSCSCCCTTTTCHHH
T ss_pred CCEEEEeehhhCCcccchHHHhhhcCCCCCEEEeccccc-CCCccceEEEe-CHHHHHHhhcCCCcccccCCCCCCCHHH
Confidence 9999999999842211 10 111111111347899998 68 99999998 788888886531 22456788999
Q ss_pred HHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHH
Q 018172 226 QLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDC 302 (360)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 302 (360)
|.++.++++.+.+. +..++++++++++.+.|+++....... ...+.++|+|+++++ ...+
T Consensus 317 ~~a~~aal~~~~~~------~~~~~~~~~~~~l~~~L~~l~~~~~~~-----------~~~~~g~~~~~~~~~~~~~~~l 379 (429)
T 1s0a_A 317 CAAANASLAILESG------DWQQQVADIEVQLREQLAPARDAEMVA-----------DVRVLGAIGVVETTHPVNMAAL 379 (429)
T ss_dssp HHHHHHHHHHHHTC------HHHHHHHHHHHHHHHHHGGGGGCTTEE-----------EEEEETTEEEEEESSCBCHHHH
T ss_pred HHHHHHHHHHHHhC------CHHHHHHHHHHHHHHHHHHHhcCCCEE-----------EEEEeeEEEEEEECCcccHHHH
Confidence 99998888754332 355667778888888888762110000 011334577888764 3567
Q ss_pred HHHHHhhCeeeeCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhchh
Q 018172 303 EKLLRAERIMARGGRRFGADAKYARVSML--SREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 303 ~~~l~~~gI~~~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~~~ 352 (360)
.+.|.++||.++|+ .+++||+++ .++|++++++++|++++++.+
T Consensus 380 ~~~l~~~Gi~v~~~------~~~iRis~~~~~t~e~i~~~~~~l~~~~~~~~ 425 (429)
T 1s0a_A 380 QKFFVEQGVWIRPF------GKLIYLMPPYIILPQQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp HHHHHHTTEECCCB------TTEEEECCCTTCCHHHHHHHHHHHHHHTSSGG
T ss_pred HHHHHHCCCEEecc------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 77777899999883 369999954 499999999999999987644
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-25 Score=204.84 Aligned_cols=284 Identities=15% Similarity=0.067 Sum_probs=199.8
Q ss_pred ccc-CCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHH
Q 018172 26 YLS-DMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 26 ~y~-~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
.|+ +..+. .++|++++++++. . ++++++|+|+++..++..+ +++||+ |+++.|+|..+...
T Consensus 50 ~~~~~~~~~-----~~l~~~la~~~~~-------~-~~i~~~~gt~al~~~l~~~~~~~gd~----vl~~~~~~~~~~~~ 112 (391)
T 3dr4_A 50 WISSVGRFI-----VEFEKAFADYCGV-------K-HAIACNNGTTALHLALVAMGIGPGDE----VIVPSLTYIASANS 112 (391)
T ss_dssp CCSSCSHHH-----HHHHHHHHHHHTC-------S-EEEEESSHHHHHHHHHHHHTCCTTCE----EEEESSSCTHHHHH
T ss_pred CccCCChHH-----HHHHHHHHHHhCC-------C-cEEEeCCHHHHHHHHHHHcCCCCcCE----EEECCCchHHHHHH
Confidence 355 44555 9999999999985 3 6888888999999999999 899998 99999999999999
Q ss_pred HHHhCCeeeeecCCccc-------ccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-CcC
Q 018172 104 TDYLRSGLYKWDGDANT-------FDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-TPI 172 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~-------~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-~~~ 172 (360)
++..|++++.++.+.+. +.. ++++++|+ |+||||...+ +.+.++|+++|+++|+|++|+.+.. ...
T Consensus 113 ~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~ 189 (391)
T 3dr4_A 113 VTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGK 189 (391)
T ss_dssp HHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE
T ss_pred HHHCCCEEEEEecCccccCcCHHHHHHhcCCCceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCe
Confidence 99999999998876432 221 35788887 6789999887 7788889999999999999985322 111
Q ss_pred -CCCCCccEEEeccc--cccCCCCceEEEEeecCHHHHHHHHHHHhhccc------------cCChHHHHHHHHHhcccC
Q 018172 173 -TGAADHDIMLFTLS--KCTGHAGSRIGWALVKDTEVARKMTRFIELGSI------------GVSKESQLRAAKILGIVS 237 (360)
Q Consensus 173 -~~~~~~~i~~~S~s--K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~l~~~~ 237 (360)
.... .++.+.||| |.++ |.+.|+++++++++.+.+......... +.......++.....
T Consensus 190 ~~~~~-~di~~~S~s~~K~l~--~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~--- 263 (391)
T 3dr4_A 190 KSGSL-GDCATFSFFGNAIIT--TGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQ--- 263 (391)
T ss_dssp ETTSS-SSEEEEECBTTSSSC--CBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHH---
T ss_pred eeccc-CCEEEEECCCCCcCC--cCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHH---
Confidence 1111 247777876 7664 457899988678888888776543211 011122222222121
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC---CCcccccccccCCCCCCcccccCCc-----hHHHHHHHHhh
Q 018172 238 DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEY---PLEYCNFTGKFTNSHPGFAWLESKE-----DEDCEKLLRAE 309 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~ 309 (360)
...+++..++.+++.+++.+.|+++ ++.+..+ .+.. .....+++.+++ .+.+.+.|.++
T Consensus 264 ---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~l~~~L~~~ 330 (391)
T 3dr4_A 264 ---LERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGR---------HVFWMYTVRLGEGLSTTRDQVIKDLDAL 330 (391)
T ss_dssp ---HHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSC---------CCCSSEEEEECSSCSSCHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCc---------ceeEEEEEEECCccchhHHHHHHHHHHC
Confidence 1456677788888888999999888 5554433 1111 111123555554 37788889999
Q ss_pred CeeeeCCCCC---CC----------------CCCeEEEEecC--ChHHHHHHHHHHHHHH
Q 018172 310 RIMARGGRRF---GA----------------DAKYARVSMLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 310 gI~~~pg~~f---~~----------------~~~~~R~s~~~--~~e~~~~~~~~l~~~~ 348 (360)
||.+++|... .. ....+|+++.. ++|++++++++|++++
T Consensus 331 GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 331 GIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp TCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred CCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 9999987411 00 13468998865 8999999999998764
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-25 Score=204.45 Aligned_cols=286 Identities=11% Similarity=0.052 Sum_probs=200.3
Q ss_pred ccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHH
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETD 105 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~ 105 (360)
|.+..+. .++|++++++++. + ++++++|+|+++..++..+ +++||+ |+++.|+|..+...++
T Consensus 32 ~~~~~~~-----~~l~~~la~~~~~-------~-~~i~~~sgt~al~~~l~~l~~~~gd~----Vi~~~~~~~~~~~~~~ 94 (373)
T 3frk_A 32 FILGDED-----KKFEQEFADYCNV-------N-YCIGCGNGLDALHLILKGYDIGFGDE----VIVPSNTFIATALAVS 94 (373)
T ss_dssp CSSSHHH-----HHHHHHHHHHHTS-------S-EEEEESCHHHHHHHHHHHTTCCTTCE----EEEETTSCTHHHHHHH
T ss_pred ccCCchH-----HHHHHHHHHHhCC-------C-eEEEeCCHHHHHHHHHHHcCCCCcCE----EEECCCCcHHHHHHHH
Confidence 5555555 9999999999985 3 7999999999999999999 899998 9999999999999999
Q ss_pred HhCCeeeeecCCcc-------cccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCC-C
Q 018172 106 YLRSGLYKWDGDAN-------TFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPIT-G 174 (360)
Q Consensus 106 ~~g~~~~~~~~~~~-------~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~-~ 174 (360)
..|++++.++.+.+ .+.. ++++++|+ |+||||...+ +.+.++|+++|+++|+|++|+.+...... -
T Consensus 95 ~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~ 171 (373)
T 3frk_A 95 YTGAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKV 171 (373)
T ss_dssp HHSCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEET
T ss_pred HcCCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEec
Confidence 99999998876532 2222 35788888 7889999887 78888899999999999999854321111 1
Q ss_pred CCCccEEEeccc--cccCCCCceEEEEeecCHHHHHHHHHHHhhcc------------ccCChHHHHHHHHHhcccCCCc
Q 018172 175 AADHDIMLFTLS--KCTGHAGSRIGWALVKDTEVARKMTRFIELGS------------IGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 175 ~~~~~i~~~S~s--K~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
....++.+.||| |.++.+| +.|+++++++++.+.+......+. ...+.+...++...+
T Consensus 172 ~~~~d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~------- 243 (373)
T 3frk_A 172 GSLGDAAGFSFYPAKNLGSLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKL------- 243 (373)
T ss_dssp TSSSSEEEEECCTTSSSCCSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHH-------
T ss_pred cccccEEEEeCcCCCccCccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHH-------
Confidence 111468888877 9887435 378888867888888877664221 112333222222211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC-CcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYP-LEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRF 319 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f 319 (360)
..+++..++.+++.+++.+.|++++ +.++... +....+ ..+.+...+.+.+.+.|+++||.++++...
T Consensus 244 -~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~ 312 (373)
T 3frk_A 244 -KYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVW---------YTFVIRSEKRDELQKYLNNNGIGTLIHYPI 312 (373)
T ss_dssp -HTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCC---------SSEEEEESSHHHHHHHHHHTTBCCBCSCSS
T ss_pred -HHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceee---------EEEEEEeCCHHHHHHHHHHCCCCcccCcCC
Confidence 4456677777788888888888776 4443221 111110 012233344578889999999999976521
Q ss_pred C-----------C----C-------CCeEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 320 G-----------A----D-------AKYARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 320 ~-----------~----~-------~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
. . . .+.+|+++.. ++||+++++++|++...+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~~ 368 (373)
T 3frk_A 313 PIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLEH 368 (373)
T ss_dssp CGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC---
T ss_pred ccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 1 0 0 1579999866 9999999999999887664
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-24 Score=200.02 Aligned_cols=282 Identities=15% Similarity=0.122 Sum_probs=203.1
Q ss_pred cccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
.|.+..+. .++|++++++++. + ++++++|+|+++..++..+ +++||+ |+++.|+|..+...+
T Consensus 30 ~~~~~~~~-----~~l~~~la~~~~~-------~-~~~~~~sGt~al~~al~~~~~~~gd~----Vi~~~~~~~~~~~~~ 92 (367)
T 3nyt_A 30 QYILGPEV-----TELEDRLADFVGA-------K-YCISCANGTDALQIVQMALGVGPGDE----VITPGFTYVATAETV 92 (367)
T ss_dssp CCSSCHHH-----HHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHTTCCTTCE----EEEESSSCTHHHHHH
T ss_pred CccCChHH-----HHHHHHHHHHhCC-------C-cEEEeCCHHHHHHHHHHHhCCCCcCE----EEECCCccHHHHHHH
Confidence 35444555 9999999999985 3 7999999999999999999 889998 999999999999999
Q ss_pred HHhCCeeeeecCCccc-------ccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC-c-C
Q 018172 105 DYLRSGLYKWDGDANT-------FDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT-P-I 172 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~~-------~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~-~-~ 172 (360)
...|++++.++.+.+. ++. ++++++|+ |+||||...+ +.+.++|+++|+++|+|++|+.+... . .
T Consensus 93 ~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~ 169 (367)
T 3nyt_A 93 ALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKR 169 (367)
T ss_dssp HHTTCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEE
T ss_pred HHcCCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCee
Confidence 9999999998876542 221 35788887 8899998877 77888999999999999999853221 1 1
Q ss_pred CCCCCccEEEecc--ccccCCCCceEEEEeecCHHHHHHHHHHHhhc------------cccCChHHHHHHHHHhcccCC
Q 018172 173 TGAADHDIMLFTL--SKCTGHAGSRIGWALVKDTEVARKMTRFIELG------------SIGVSKESQLRAAKILGIVSD 238 (360)
Q Consensus 173 ~~~~~~~i~~~S~--sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~ 238 (360)
.+..+ ++.+.|| +|.++.+|. .|+++++++++.+.+....... +...+...+.++...+
T Consensus 170 ~~~~~-di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l----- 242 (367)
T 3nyt_A 170 SCNLS-TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKL----- 242 (367)
T ss_dssp TTSSS-SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHH-----
T ss_pred ccCCC-CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHH-----
Confidence 11222 7889997 899996576 8899887789998888765431 2334444444444433
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC-CCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCC
Q 018172 239 DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEY-PLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGR 317 (360)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~ 317 (360)
+.+++..++.+++.+++.+.|++++ +.+... .+....+ ..+.+..++.+.+.+.|+++||.++++.
T Consensus 243 ---~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~L~~~GI~~~~~~ 309 (367)
T 3nyt_A 243 ---EIFEEEIALRQKVAAEYDLSLKQVG-IGTPFIEVNNISVY---------AQYTVRMDNRESVQASLKAAGVPTAVHY 309 (367)
T ss_dssp ---HTHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCTTEECCC---------SSEEEECSSHHHHHHHHHHHTCCCBCSC
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhccCC-eeccCCCCCCceee---------EEEEEEeCCHHHHHHHHHHCCCceeccC
Confidence 3345566677777888888898884 333222 2211111 1234555555888899999999998765
Q ss_pred CC--------C-C----------CCCeEEEEecC--ChHHHHHHHHHHHHH
Q 018172 318 RF--------G-A----------DAKYARVSMLS--REEIFNIFLERLSAI 347 (360)
Q Consensus 318 ~f--------~-~----------~~~~~R~s~~~--~~e~~~~~~~~l~~~ 347 (360)
.. . . ....+|+++.. ++||++++++++++.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 310 PIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp SSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred CCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 31 1 0 02358999866 899999999988764
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=207.51 Aligned_cols=284 Identities=11% Similarity=0.034 Sum_probs=191.2
Q ss_pred cccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCC-CCcHHHH
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYY-SQYPAET 104 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~-~~~~~~~ 104 (360)
.|.+..+. .+||++++++++. +++++|+|+++++..++..++++|| +++.|+| ..+...+
T Consensus 70 ~y~~~~~~-----~~l~~~la~~~~~--------~~~~~~~~gt~a~~~al~~l~~~gd------i~~~~~~~~~~~~~~ 130 (456)
T 2ez2_A 70 AYAGSENF-----YHLERTVQELFGF--------KHIVPTHQGRGAENLLSQLAIKPGQ------YVAGNMYFTTTRYHQ 130 (456)
T ss_dssp CSSSCHHH-----HHHHHHHHHHHCC--------SEEEEESSHHHHHHHHHHHHCCTTC------EEEESSCCHHHHHHH
T ss_pred hcccChhH-----HHHHHHHHHHhCC--------CcEEEeCCcHHHHHHHHHHhCCCCC------EeccccccchhHHHH
Confidence 46655565 9999999999984 3799999999999999999988875 6778999 7778889
Q ss_pred HHhCCeeeeecCCcc-----------cccc-------CCC----eeEEEEcCCCC-CCcccch----HHHHHHhhhcCcE
Q 018172 105 DYLRSGLYKWDGDAN-----------TFDK-------NNG----AYIEVVNSPNN-PDGTIRE----AVLAKVNRSAEGK 157 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~-----------~~~~-------~~~----~~~i~~~~p~N-PtG~~~~----~~~~~~~~~~~~~ 157 (360)
...|++++.++++.+ .++. +++ +++|++++|+| |||.+++ +.+.++|+++|++
T Consensus 131 ~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~ 210 (456)
T 2ez2_A 131 EKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIK 210 (456)
T ss_dssp HHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCe
Confidence 999999998876521 1221 123 38999999999 9999887 4567888999999
Q ss_pred EEEeecccCC----------CCCcCC--------CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc--
Q 018172 158 LIHDLAYYWP----------QYTPIT--------GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG-- 217 (360)
Q Consensus 158 li~D~ay~~~----------~~~~~~--------~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~-- 217 (360)
+|+|++|..+ .+.... .... ++++.|++|..+ +| ++||+++.++++++.+.......
T Consensus 211 li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~-d~~~~S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~~~ 287 (456)
T 2ez2_A 211 VFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYA-DGCTMSGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVYEG 287 (456)
T ss_dssp EEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTC-SEEEEETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHHTC
T ss_pred EEEEccccccccccccccccccCCcchhhhhhhhcccC-CEEEEeCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhccC
Confidence 9999998752 222111 1222 345558888765 67 78999885688888887655321
Q ss_pred ---cccCChHHHHH-HHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCccc
Q 018172 218 ---SIGVSKESQLR-AAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAW 293 (360)
Q Consensus 218 ---~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (360)
..+.+.....+ +.+.++.+. ++..++.+++.+++.+.|++. ++.+..|.+++ ++|
T Consensus 288 ~~~~~~~~~~~~~a~a~~~~~~~~-------~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~~~-------------~~~ 346 (456)
T 2ez2_A 288 MPSYGGLAGRDMEAMAIGLREAMQ-------YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGH-------------AVF 346 (456)
T ss_dssp CTTTTTCCHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSS-------------EEE
T ss_pred cccccCcchhHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHhcC-CCccccCCCce-------------EEE
Confidence 12233333222 222222110 234444455567777788775 44444454443 455
Q ss_pred ccCC------ch-HH-----HHHHHHhhCeeeeC-CCCC-------C----CCCCeEEEEec---CChHHHHHHHHHHHH
Q 018172 294 LESK------ED-ED-----CEKLLRAERIMARG-GRRF-------G----ADAKYARVSML---SREEIFNIFLERLSA 346 (360)
Q Consensus 294 ~~~~------~~-~~-----~~~~l~~~gI~~~p-g~~f-------~----~~~~~~R~s~~---~~~e~~~~~~~~l~~ 346 (360)
+++. +. +. +..+++++||.+.+ |..| + ...+++||++. .++|++++++++|++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~ 426 (456)
T 2ez2_A 347 LDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIK 426 (456)
T ss_dssp EEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred EEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4431 11 22 33333788999766 4432 1 12478999997 589999999999999
Q ss_pred HHhchh
Q 018172 347 IQGGSI 352 (360)
Q Consensus 347 ~~~~~~ 352 (360)
++.+.+
T Consensus 427 ~l~~~~ 432 (456)
T 2ez2_A 427 LYQHKE 432 (456)
T ss_dssp HHHTGG
T ss_pred HHhhhh
Confidence 997643
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=211.05 Aligned_cols=267 Identities=13% Similarity=0.017 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHhhcCCCCCC-CCcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHH-HhC-------
Q 018172 39 PELAEAINNLHHVVDNAVSD-GRHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETD-YLR------- 108 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~-~~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~-~~g------- 108 (360)
.++++.++++++. + +++|++|+|+++++..++..+.. +|+. |++++|+|+.+...+. ..|
T Consensus 89 ~~l~~~la~~~~~------~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~----vi~~~p~yh~~~~~~~~~~~~~~~~~~ 158 (419)
T 2eo5_A 89 LELAKKLVTYSPG------NFQKKVFFSNSGTEAIEASIKVVKNTGRKY----IIAFLGGFHGRTFGSISLTASKAVQRS 158 (419)
T ss_dssp HHHHHHHHHHSSC------SSCEEEEEESSHHHHHHHHHHHHHTTSCCE----EEEETTCCCCSSHHHHHHCCSCGGGGC
T ss_pred HHHHHHHHHhCCC------CcCCEEEEeCchHHHHHHHHHHHHHhhCCc----EEEECCCcCCCCHhhHhhcCCcccccc
Confidence 6777777777653 3 46899999999999999987654 3776 9999999986654433 211
Q ss_pred ------CeeeeecCCc----------------------cccc-c--C-----CCeeEEEEcCCC-CCCccc-ch----HH
Q 018172 109 ------SGLYKWDGDA----------------------NTFD-K--N-----NGAYIEVVNSPN-NPDGTI-RE----AV 146 (360)
Q Consensus 109 ------~~~~~~~~~~----------------------~~~~-~--~-----~~~~~i~~~~p~-NPtG~~-~~----~~ 146 (360)
.+++.++.+. +.++ . + +++++|+ ++|+ ||||.. .+ +.
T Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi-~~p~~~~tG~~~~~~~~l~~ 237 (419)
T 2eo5_A 159 IVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIF-FEPIQGEGGYVIPPKNFFAE 237 (419)
T ss_dssp SSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEE-ECSSBTTTTSBCCCTTHHHH
T ss_pred ccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEE-EeCccCCCCCccCCHHHHHH
Confidence 2445555432 1333 2 1 3445555 4554 678975 43 46
Q ss_pred HHHHhhhcCcEEEEeecccCCCCC-cC--CCCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHHHhhccccCC
Q 018172 147 LAKVNRSAEGKLIHDLAYYWPQYT-PI--TGAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRFIELGSIGVS 222 (360)
Q Consensus 147 ~~~~~~~~~~~li~D~ay~~~~~~-~~--~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (360)
+.++|+++|+++|+||+|.+.... .. ....+...-+.||||.++ .| +|+||+++ +++++ .+ ......+++.|
T Consensus 238 l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~-~G~~riG~~~~-~~~~~-~~-~~~~~~t~~~n 313 (419)
T 2eo5_A 238 LQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALG-GGIMPIGATIF-RKDLD-FK-PGMHSNTFGGN 313 (419)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGG-TTTSCCEEEEE-EGGGC-CC-------CCCCC
T ss_pred HHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEeccccc-CCccceEEEEE-chHhh-cC-CcccCCCCCCC
Confidence 678899999999999999843211 10 111111111348999999 59 99999999 66766 66 32334567889
Q ss_pred hHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC-Cc--h
Q 018172 223 KESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES-KE--D 299 (360)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~ 299 (360)
+++|.++.++++.. ++.+++++++++++.+.|+++ +... ++.++|+|+++ ++ .
T Consensus 314 ~~~~~aa~aal~~~--------~~~~~~~~~~~~~l~~~L~~~--~~~~--------------~~~g~~~~i~~~~~~~~ 369 (419)
T 2eo5_A 314 ALACAIGSKVIDIV--------KDLLPHVNEIGKIFAEELQGL--ADDV--------------RGIGLAWGLEYNEKKVR 369 (419)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHTTS--SSEE--------------EEETTEEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHh--hhhe--------------EeeeEEEEEEEecCccH
Confidence 99999999988732 227888999999999999776 1111 13345778888 32 1
Q ss_pred -HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhc
Q 018172 300 -EDCEKLLRAERIMARGGRRFGADAKYARVSML--SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 300 -~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~ 350 (360)
. +.+.|.++||.++|+. .+++||+++ .++|++++++++|++++++
T Consensus 370 ~~-~~~~l~~~Gv~v~~~~-----~~~lRis~~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 370 DR-IIGESFKRGLLLLPAG-----RSAIRVIPPLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp HH-HHHHHHHTTEECEEET-----TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHCCCEEecCC-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 5 7777779999999863 569999764 4999999999999998864
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-25 Score=208.45 Aligned_cols=270 Identities=13% Similarity=0.070 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC-------CCC-CCCceEEEeCCCCCCcHH-HHHHhCC
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS-------PGG-PEPISVVSAAPYYSQYPA-ETDYLRS 109 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~-------~gd-~~~~~vl~~~p~~~~~~~-~~~~~g~ 109 (360)
.++++.++++++ . ++|++|+|+++++..++..+.. +|+ . |++++|+|..... .+...|.
T Consensus 102 ~~l~~~la~~~g-------~-~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~----vi~~~~~yh~~~~~~~~~~g~ 169 (420)
T 2pb2_A 102 LRLGRKLIDATF-------A-ERVLFMNSGTEANETAFKLARHYACVRHSPFKTK----IIAFHNAFHGRSLFTVSVGGQ 169 (420)
T ss_dssp HHHHHHHHHHSS-------C-SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCE----EEEETTCCCCSSHHHHHHSSC
T ss_pred HHHHHHHHhhCC-------C-CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCE----EEEEeCCcCCcCHHHHHhcCC
Confidence 666666666654 3 5899999999999999998865 664 5 9999999987754 4445554
Q ss_pred e------------eeeecC-Ccccccc--CCCeeEEEEcCCCCCCcc-cch----HHHHHHhhhcCcEEEEeecccCCCC
Q 018172 110 G------------LYKWDG-DANTFDK--NNGAYIEVVNSPNNPDGT-IRE----AVLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 110 ~------------~~~~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~-~~~----~~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
+ +..++. |.+.++. ++++++|+++.++|++|. +++ +.+.++|+++|+++|+||+|.+...
T Consensus 170 ~~~~~~~~p~~~~~~~~~~~d~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~ 249 (420)
T 2pb2_A 170 PKYSDGFGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGR 249 (420)
T ss_dssp HHHHTTSSSCCSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred ccccccCCCCCCCeEEecCCCHHHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCccc
Confidence 3 444442 3344432 467899999888888885 344 4677889999999999999974221
Q ss_pred C--cC----CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 170 T--PI----TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 170 ~--~~----~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
. .. .+. ..+++ ||||.++ +|+|+||+++ ++++++.+.......+++.|++.|.++.++++.+.+
T Consensus 250 ~g~~~~~~~~~~-~~dii--t~sK~l~-~G~~iG~~~~-~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~----- 319 (420)
T 2pb2_A 250 TGDLFAYMHYGV-TPDIL--TSAKALG-GGFPVSAMLT-TQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINT----- 319 (420)
T ss_dssp TSSSSHHHHHTC-CCSEE--EECGGGG-TTSCCEEEEE-CHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSS-----
T ss_pred CCcHHHHHhcCC-CCCeE--Eeccccc-CCCceEEEEE-hHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh-----
Confidence 1 11 111 22333 7899999 8999999999 788887776544445678899999999888875532
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCcccCCCCCcccccccccCCCCCCcccccCCc-----hHHHHHHHHhhCeeee
Q 018172 244 FEYGRRLMSERWNMLRQVIRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----DEDCEKLLRAERIMAR 314 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gI~~~ 314 (360)
++..++++++++++.+.|+++ +.+... ++.++|+++.+++ ...+.+.|.++||.+.
T Consensus 320 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--------------~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~ 384 (420)
T 2pb2_A 320 -PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDI--------------RGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVL 384 (420)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE--------------EEETTEEEEEECGGGTTCHHHHHHHHHHTTEECE
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE--------------EecceEEEEEECCCchHHHHHHHHHHHHCCCEEE
Confidence 356677788888888888765 211111 1234466777653 3567777778999999
Q ss_pred CCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhc
Q 018172 315 GGRRFGADAKYARVSML--SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 315 pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~ 350 (360)
|+. ++++||++. .++|++++++++|++++++
T Consensus 385 ~~~-----~~~iRl~~~~~~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 385 NAG-----ADVMRFAPSLVVEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp ESS-----TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eCC-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 863 579999953 4999999999999998864
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-25 Score=212.84 Aligned_cols=284 Identities=10% Similarity=0.050 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcC-----CC---CCCCceEEEeCCCCCCcHHHHHHhCC
Q 018172 39 PELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSS-----PG---GPEPISVVSAAPYYSQYPAETDYLRS 109 (360)
Q Consensus 39 ~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~-----~g---d~~~~~vl~~~p~~~~~~~~~~~~g~ 109 (360)
.++++.+++++. ..|.+.. .+++++|+|+++++..++.++.+ +| +. |+++.|+|..+...++..|+
T Consensus 106 ~~l~~~~~~~la~~~g~~~~-~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~----Vi~~~~~h~~~~~~~~~~G~ 180 (497)
T 3mc6_A 106 RKMESEVVSMVLRMFNAPSD-TGCGTTTSGGTESLLLACLSAKMYALHHRGITEPE----IIAPVTAHAGFDKAAYYFGM 180 (497)
T ss_dssp HHHHHHHHHHHHHHTTCCTT-TCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCE----EEEETTSCHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhCCCCC-CCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCce----EEEeCCccHHHHHHHHHcCC
Confidence 566666655432 2233222 35899999999999999998864 45 55 99999999999999999999
Q ss_pred eeeeecCCcc-------cccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCC-----------C
Q 018172 110 GLYKWDGDAN-------TFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWP-----------Q 168 (360)
Q Consensus 110 ~~~~~~~~~~-------~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~-----------~ 168 (360)
+++.++.+.+ .+.. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++|+.. .
T Consensus 181 ~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~ 260 (497)
T 3mc6_A 181 KLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKN 260 (497)
T ss_dssp EEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCS
T ss_pred eEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccC
Confidence 9999987652 2221 457999999999999999988 67778888899999999999731 1
Q ss_pred CCcC-CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHH-hhc---c---c----cCC---hHHHHHHHHHh
Q 018172 169 YTPI-TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI-ELG---S---I----GVS---KESQLRAAKIL 233 (360)
Q Consensus 169 ~~~~-~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-~~~---~---~----~~~---~~~~~~~~~~l 233 (360)
.++. ....+.++++.|++|.++ .|.++|+++++++.+ ....... ... . . +.+ ..++.++...+
T Consensus 261 ~~~~~~~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l 338 (497)
T 3mc6_A 261 LPLLDFRVPGVTSISCDTHKYGF-APKGSSVIMYRNSDL-RMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNM 338 (497)
T ss_dssp CCCCSTTSTTCCEEEEETTTTTC-CCSSCEEEECSSHHH-HTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHH
T ss_pred CccccccCCCCcEEEECchhhcC-CCCCceeEEecCHHH-HhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHH
Confidence 1112 234566899999999764 677899999854443 3221111 000 0 0 011 22233333333
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHh-cCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhC
Q 018172 234 GIVSDDYPNFFEYGRRLMSERWNMLRQVIRQ-SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAER 310 (360)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~g 310 (360)
. ...+++..++..++.+++.+.|++ ++++.+..+. ..+++++..++ ...+.+.|.++|
T Consensus 339 ~------~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~L~~~G 399 (497)
T 3mc6_A 339 G------ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP-------------RYSVISFSSKTLNIHELSDRLSKKG 399 (497)
T ss_dssp H------HHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC-------------CSSEEEEECTTTTHHHHHHHHHTTT
T ss_pred h------HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-------------CeeEEEEeCCCCCHHHHHHHHHhCC
Confidence 3 256678888899999999999999 5766654332 12244445443 377888899999
Q ss_pred eeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHHhchh
Q 018172 311 IMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 311 I~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~~ 352 (360)
|.++++.. +..+|++++. ++|++++++++|++++.+.+
T Consensus 400 i~v~~~~~----~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~ 438 (497)
T 3mc6_A 400 WHFNALQK----PVALHMAFTRLSAHVVDEICDILRTTVQELK 438 (497)
T ss_dssp CBCEECCS----SCCEEEECCTTTTCTHHHHHHHHHHHHHHHT
T ss_pred EEEecCCC----CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 99886532 3468999876 89999999999999997643
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=212.13 Aligned_cols=271 Identities=13% Similarity=0.062 Sum_probs=194.8
Q ss_pred cEEEcCChHHHHHHHHHhh----cCCCC-CCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCccc------ccc--CCCe
Q 018172 61 HIVIGTGSTQLYQAALYAL----SSPGG-PEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANT------FDK--NNGA 127 (360)
Q Consensus 61 ~i~~t~G~t~~l~~~~~~l----~~~gd-~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~------~~~--~~~~ 127 (360)
.+++|+|+++++..++..+ .++|| ..+.+|+++.|+|+.+...++..|++++.++.+.++ ++. ++++
T Consensus 125 ~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~~t 204 (474)
T 1wyu_B 125 ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGPHV 204 (474)
T ss_dssp EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTE
T ss_pred eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhCCCc
Confidence 4778899999998765554 35777 222349999999999999999999999999875332 211 4679
Q ss_pred eEEEEcCCCCCCcccc-h-HHHHHHhhhcCcEEEEeecccCCCCCcC-CCCCCccEEEeccccccCCC-C---ceEEEEe
Q 018172 128 YIEVVNSPNNPDGTIR-E-AVLAKVNRSAEGKLIHDLAYYWPQYTPI-TGAADHDIMLFTLSKCTGHA-G---SRIGWAL 200 (360)
Q Consensus 128 ~~i~~~~p~NPtG~~~-~-~~~~~~~~~~~~~li~D~ay~~~~~~~~-~~~~~~~i~~~S~sK~~~~~-G---~r~G~~~ 200 (360)
++|++++| ||||.+. + +.+.++|+++|+++|+|++|..+..... ....+.++++.|+||.|+.| | .|+||++
T Consensus 205 ~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~ 283 (474)
T 1wyu_B 205 AALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVG 283 (474)
T ss_dssp EEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEE
T ss_pred eEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEE
Confidence 99999998 5899884 4 6788889989999999999975432111 12335789999999999876 4 5999999
Q ss_pred ecCHHHHHHHHH-HH------------------hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHH
Q 018172 201 VKDTEVARKMTR-FI------------------ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQV 261 (360)
Q Consensus 201 ~~~~~~~~~l~~-~~------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (360)
+ ++++++.+.. .. .....+.+...+.++.+.+..+. .+.+++..+++.++++++.+.
T Consensus 284 ~-~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g---~~~l~~~~~~~~~~~~~l~~~ 359 (474)
T 1wyu_B 284 V-KAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG---LEGLKKAAALAVLNARYLKEL 359 (474)
T ss_dssp E-CGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred E-cHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 9 6777666541 10 01123456677777777665321 266888899999999999999
Q ss_pred HHhcCCcccCCCCCcccccccccCCCCCCcccccCC---chHHHHHHHHhhCeeeeCCCCCCC-CCCeEEEEecC--ChH
Q 018172 262 IRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK---EDEDCEKLLRAERIMARGGRRFGA-DAKYARVSMLS--REE 335 (360)
Q Consensus 262 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gI~~~pg~~f~~-~~~~~R~s~~~--~~e 335 (360)
|+++ ++.+..+...+. .++++++ +...+.+.|.++||.+ |+..|+. ..+++||+++. +++
T Consensus 360 L~~~-g~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~L~~~Gi~~-~~~~~~~~~~~~lRis~~~~~t~e 425 (474)
T 1wyu_B 360 LKEK-GYRVPYDGPSMH------------EFVAQPPEGFRALDLAKGLLELGFHP-PTVYFPLIVKEALMVEPTETEAKE 425 (474)
T ss_dssp HHHT-TCBCSSCSSCCS------------CEEEBCSTTCCHHHHHHHHHHTTCCC-CEESCSTTSTTCEEECCCTTSCHH
T ss_pred Hhhc-CcEecCCCCcce------------EEEEEcCCCCCHHHHHHHHHHCCccc-cccccccccCCEEEEEeecCCCHH
Confidence 9987 555432221110 1344442 2266777777889985 6666642 36799999976 899
Q ss_pred HHHHHHHHHHHHHhc
Q 018172 336 IFNIFLERLSAIQGG 350 (360)
Q Consensus 336 ~~~~~~~~l~~~~~~ 350 (360)
++++++++|++++++
T Consensus 426 ~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 426 TLEAFAEAMGALLKK 440 (474)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999876
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=210.84 Aligned_cols=282 Identities=13% Similarity=0.072 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc-----C---CCCCCCceEEEeCCCCCCcHHHHHHhCCe
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS-----S---PGGPEPISVVSAAPYYSQYPAETDYLRSG 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~-----~---~gd~~~~~vl~~~p~~~~~~~~~~~~g~~ 110 (360)
.+|++.++++++. ..+ |++|+|+++++..++..+. . +++. |++.+|+|..+...+...+..
T Consensus 94 ~~la~~l~~~~~~------~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~----vi~~~~~yhg~~~~~~~~~~~ 162 (452)
T 3n5m_A 94 IKLAEKLNEWLGG------EYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYK----FMSRYRGYHGNTMATMAATGQ 162 (452)
T ss_dssp HHHHHHHHHHHTS------CEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCE----EEEETTCCCCSSHHHHHSCCC
T ss_pred HHHHHHHHHhCCC------Cce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCE----EEEECCCcCCCCHHHHhcCCc
Confidence 5666666666553 333 9999999999999999887 4 5565 999999999887666555432
Q ss_pred e-------------eeecC---------C---------cccccc--C----CCeeEEEEcCC-CCCCcccch-----HHH
Q 018172 111 L-------------YKWDG---------D---------ANTFDK--N----NGAYIEVVNSP-NNPDGTIRE-----AVL 147 (360)
Q Consensus 111 ~-------------~~~~~---------~---------~~~~~~--~----~~~~~i~~~~p-~NPtG~~~~-----~~~ 147 (360)
. ..++. | .+.++. + +++++|+++.+ +| ||.+++ +.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l 241 (452)
T 3n5m_A 163 AQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAV 241 (452)
T ss_dssp GGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHH
T ss_pred hhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHH
Confidence 2 12221 0 122211 1 45677888777 89 998763 467
Q ss_pred HHHhhhcCcEEEEeecccCCCCCc---CCCCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHH------HHhhc
Q 018172 148 AKVNRSAEGKLIHDLAYYWPQYTP---ITGAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTR------FIELG 217 (360)
Q Consensus 148 ~~~~~~~~~~li~D~ay~~~~~~~---~~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~------~~~~~ 217 (360)
.++|+++|+++|+||+|.+..... .....+...-+.+|||.++ .| +|+||+++ ++++++.+.. +....
T Consensus 242 ~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~-~G~~~ig~~~~-~~~i~~~~~~~~~~~~~~~~~ 319 (452)
T 3n5m_A 242 HETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGIT-SAYLPLSATAV-KREIYEAFKGKGEYEFFRHIN 319 (452)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGG-TTSSCCEEEEE-EHHHHGGGCSSSTTCSCCCCC
T ss_pred HHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeeccccc-CCCcceEEEEE-CHHHHHHHhhccCCCCccccC
Confidence 788999999999999998532111 1122222223457899999 49 99999998 8999888843 11235
Q ss_pred cccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC
Q 018172 218 SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297 (360)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
+++.|++++.++.++++.+.+. ...++.++.....++.+.+.+.+++.+.... +.+.|+++.+.
T Consensus 320 t~~~~~~~~aaa~aal~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--------------~~g~~~~i~~~ 383 (452)
T 3n5m_A 320 TFGGNPAACALALKNLEIIENE--NLIERSAQMGSLLLEQLKEEIGEHPLVGDIR--------------GKGLLVGIELV 383 (452)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTTCTTEEEEE--------------ESSSCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE--------------EEEEEEEEEEe
Confidence 6788999999999988754322 4455555555555555555445554333222 23334555442
Q ss_pred c----------h--HHHHHHHHhhCeeeeCCCCCCC-CCCeEEEEe--cCChHHHHHHHHHHHHHHhc
Q 018172 298 E----------D--EDCEKLLRAERIMARGGRRFGA-DAKYARVSM--LSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 298 ~----------~--~~~~~~l~~~gI~~~pg~~f~~-~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~ 350 (360)
+ . ..+.+.|.++||.++|+..|.. .++++||++ ..++|++++++++|++++.+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 384 NDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp EETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred cCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1 1 3567788899999999886643 367999974 44999999999999999864
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-24 Score=200.89 Aligned_cols=278 Identities=14% Similarity=0.100 Sum_probs=187.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH---HHHHh--CCeeeeec
Q 018172 41 LAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA---ETDYL--RSGLYKWD 115 (360)
Q Consensus 41 lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~---~~~~~--g~~~~~~~ 115 (360)
+++.++++++. +.++|++++| ++++..++..++++||+ |+++.|+|..+.. .+... +..++.++
T Consensus 76 ~~~~la~~~g~------~~~~i~~~sG-t~a~~~~~~~~~~~gd~----vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 144 (417)
T 3n0l_A 76 AIERCKKLFNC------KFANVQPNSG-SQANQGVYAALINPGDK----ILGMDLSHGGHLTHGAKVSSSGKMYESCFYG 144 (417)
T ss_dssp HHHHHHHHHTC------SEEECCCSSH-HHHHHHHHHHHSCTTCE----EEEECC----------------CCSEEEEEC
T ss_pred HHHHHHHHhCC------CCcceEeccH-HHHHHHHHHHhcCCCCE----EEecccccccccchhhhhhhhcceeeeEecc
Confidence 34467777775 4446888888 79999999999999998 9999999987655 33333 34455555
Q ss_pred CCcc------cccc--C-CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccC-----CCCCcCCCCCCccE
Q 018172 116 GDAN------TFDK--N-NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYW-----PQYTPITGAADHDI 180 (360)
Q Consensus 116 ~~~~------~~~~--~-~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~-----~~~~~~~~~~~~~i 180 (360)
.+.+ .+.. + +++++|++++||| |..++ +.+.++|+++|+++|+|++|.. +..+.. ....++
T Consensus 145 ~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~~~~di 220 (417)
T 3n0l_A 145 VELDGRIDYEKVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSP--FPYAHV 220 (417)
T ss_dssp CCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCC--TTTCSE
T ss_pred CCCCCCcCHHHHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCc--cccceE
Confidence 5422 1211 2 4789999888886 77777 6778889999999999999752 111111 124679
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccc-cCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI-GVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLR 259 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (360)
++.|+||.+ +|.|+||++++++++.+.+......... +.+...+.++..++.... +..+++.+++++++++++.
T Consensus 221 ~~~s~sK~l--~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~---~~~~~~~~~~~~~~~~~l~ 295 (417)
T 3n0l_A 221 VSSTTHKTL--RGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNL---SDEWKVYAKQVRTNAQVLA 295 (417)
T ss_dssp EEEESSTTT--CSCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHT---SHHHHHHHHHHHHHHHHHH
T ss_pred EEeeCcccc--CCCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHH
Confidence 999999987 6888999999448999998877654333 334444444444454322 1667889999999999999
Q ss_pred HHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeeeCCCCCCC-----CCCeEEEEe
Q 018172 260 QVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMARGGRRFGA-----DAKYARVSM 330 (360)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~pg~~f~~-----~~~~~R~s~ 330 (360)
+.|++. ++.+... + ..++++|+.+.. ...+.++|.++||.++++..+.. ....+|+++
T Consensus 296 ~~L~~~-g~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~ 362 (417)
T 3n0l_A 296 NVLMDR-KFKLVSD-G-----------TDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGT 362 (417)
T ss_dssp HHHHHT-TCEEGGG-S-----------CSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEEC
T ss_pred HHHHhC-CceeccC-C-----------CCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecC
Confidence 999885 3443321 1 223366777642 37888899999999987543321 245799987
Q ss_pred c------CChHHHHHHHHHHHHHHhch
Q 018172 331 L------SREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 331 ~------~~~e~~~~~~~~l~~~~~~~ 351 (360)
. .+++++++++++|.+++.+.
T Consensus 363 ~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 363 PALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 4 25799999999999999753
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=211.54 Aligned_cols=267 Identities=11% Similarity=0.009 Sum_probs=177.2
Q ss_pred CcEEEcCChHHHHHHHHHhh--cCCCCCCCceEEEeCCCCCCcHHHHHHh-CCee--------------eeecCC-----
Q 018172 60 RHIVIGTGSTQLYQAALYAL--SSPGGPEPISVVSAAPYYSQYPAETDYL-RSGL--------------YKWDGD----- 117 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l--~~~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~~--------------~~~~~~----- 117 (360)
+++++|+|+++++..++..+ ..+++. |++.+|+|......+..+ |... ..++.+
T Consensus 105 ~~v~~~~ggsea~~~al~~~~~~~~~~~----vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (439)
T 3dxv_A 105 HKIWFGHSGSDANEAAYRAIVKATGRSG----VIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRND 180 (439)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSCCE----EEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTB
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhCCCE----EEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCccccc
Confidence 58999999999999999885 234455 888899987665554443 3221 223322
Q ss_pred ------cccccc------CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCc--C-CCCCC
Q 018172 118 ------ANTFDK------NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTP--I-TGAAD 177 (360)
Q Consensus 118 ------~~~~~~------~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~--~-~~~~~ 177 (360)
.+.++. .+++++|+++.++|++|.+.+ +.+.++|+++|+++|+||+|.+..... . ....+
T Consensus 181 ~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~ 260 (439)
T 3dxv_A 181 PTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEG 260 (439)
T ss_dssp TTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTT
T ss_pred ccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcC
Confidence 222211 346788888888889998866 567788999999999999998421111 1 11112
Q ss_pred ccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH
Q 018172 178 HDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNM 257 (360)
Q Consensus 178 ~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (360)
...-+.||||.++ +|+|+||+++ ++++++.+.......++ .+++++.++.++++.+.+. ...++.++..+..++.
T Consensus 261 ~~~di~s~sK~~~-~G~riG~~~~-~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~--~~~~~~~~~~~~~~~~ 335 (439)
T 3dxv_A 261 FVPDILVLGKGLG-GGLPLSAVIA-PAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRD--DLPAMAERKGRLLRDG 335 (439)
T ss_dssp CCCSEEEECGGGG-TTSCCEEEEE-EHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcchhc-CCcceEEEEE-CHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHH
Confidence 1122339999999 7999999999 78988888765444566 8899999988888744321 4444444444444444
Q ss_pred HHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC--------Cch---HHHHHHHHhhCeeeeCCCCCCCCCCeE
Q 018172 258 LRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES--------KED---EDCEKLLRAERIMARGGRRFGADAKYA 326 (360)
Q Consensus 258 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~ 326 (360)
+.+.+..++.+.... +.++|+|+.+ ++. ..+.+.|.++||.++|+..+ .+++
T Consensus 336 l~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---~~~i 398 (439)
T 3dxv_A 336 LSELAKRHPLIGDIR--------------GRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMN---GNVL 398 (439)
T ss_dssp HHHHHHHCTTEEEEE--------------EETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTT---SCEE
T ss_pred HHHHHHhCCCeEEEE--------------EEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCC---CCEE
Confidence 444444444332222 2334666655 232 55677778889999997533 4699
Q ss_pred EEEec--CChHHHHHHHHHHHHHHhchh
Q 018172 327 RVSML--SREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 327 R~s~~--~~~e~~~~~~~~l~~~~~~~~ 352 (360)
||+++ .++|++++++++|++++.+..
T Consensus 399 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 399 EFTPPLTITETDIHKALDLLDRAFSELS 426 (439)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99764 389999999999999998764
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=210.08 Aligned_cols=281 Identities=10% Similarity=0.020 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC--CCCCCCceEEEeCCCCCCcHHHHHHhCC-------
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS--PGGPEPISVVSAAPYYSQYPAETDYLRS------- 109 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~--~gd~~~~~vl~~~p~~~~~~~~~~~~g~------- 109 (360)
.+|++.++++++ ..++|++|+|+++++..++..+.. +++. |++.+|+|..+...+...+.
T Consensus 98 ~~l~~~la~~~~-------~~~~v~~~~sGsea~~~ai~~a~~~~~~~~----vi~~~~~yhg~~~~~~~~~g~~~~~~~ 166 (434)
T 3l44_A 98 VKFAKMLKEAMP-------ALDKVRFVNSGTEAVMTTIRVARAYTGRTK----IMKFAGCYHGHSDLVLVAAGSGPSTLG 166 (434)
T ss_dssp HHHHHHHHHHCT-------TCSEEEEESSHHHHHHHHHHHHHHHHCCCE----EEEETTCCCCSSGGGGBC-------CC
T ss_pred HHHHHHHHHhCC-------CCCEEEEeCchHHHHHHHHHHHHHhhCCCE----EEEEcCccCCCcHHHHhhcCCcccccC
Confidence 566666666654 245899999999999999988754 5566 99999999887654433221
Q ss_pred -------------eeeeecC-Ccccccc-----CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeeccc
Q 018172 110 -------------GLYKWDG-DANTFDK-----NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYY 165 (360)
Q Consensus 110 -------------~~~~~~~-~~~~~~~-----~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~ 165 (360)
++..++. |.+.++. .+++++|+++.++|++|.+.+ +.+.++|+++|+++|+||+|.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~ 246 (434)
T 3l44_A 167 TPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVIT 246 (434)
T ss_dssp CBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTT
T ss_pred CCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 2222322 2233322 134566666666667777764 567889999999999999998
Q ss_pred CCCCCcCC--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHH---HhhccccCChHHHHHHHHHhcccCCCc
Q 018172 166 WPQYTPIT--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRF---IELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 166 ~~~~~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
+....... ...+...-+.||||.++ +|+|+||+++ ++++++.+.+. ....+++.|++++.++.++++.+.+.
T Consensus 247 g~~~g~~~~~~~~~~~~di~t~sK~~~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~- 323 (434)
T 3l44_A 247 AFRFMYGGAQDLLGVTPDLTALGKVIG-GGLPIGAYGG-KKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQE- 323 (434)
T ss_dssp TTTSSSSCHHHHHTCCCSEEEEEGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTST-
T ss_pred ceeccccHHHHHcCCCCCeeehhhhhc-CCcCeeeEEE-cHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcc-
Confidence 53111110 11111122568999999 8999999988 89998887652 23356789999999999988865442
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC-------------Cch---HHHHH
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES-------------KED---EDCEK 304 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~---~~~~~ 304 (360)
...++.++.....++.+.+.+..++...... +.++|+++.+ ++. ..+.+
T Consensus 324 -~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (434)
T 3l44_A 324 -GLYEKLDELGATLEKGILEQAAKHNIDITLN--------------RLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFK 388 (434)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHTTCCEEEE--------------EETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE--------------eeccEEEEEEecCcccchhhccccCHHHHHHHHH
Confidence 5555555555555555555444443322111 2233445543 121 45677
Q ss_pred HHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhchhc
Q 018172 305 LLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 305 ~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~~ 353 (360)
.|.++||.++|+. .+++|+++..++|++++++++|++++.+.++
T Consensus 389 ~l~~~Gv~v~~~~-----~~~~rl~~~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 389 LMLQEGVNLAPSK-----YEAWFLTTEHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp HHHHTTEECCSST-----TCCEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCeEEeecC-----CCcEEEecccCHHHHHHHHHHHHHHHHHHHh
Confidence 7888999999864 3578998767999999999999999976543
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=208.08 Aligned_cols=268 Identities=9% Similarity=-0.002 Sum_probs=187.4
Q ss_pred CCcEEEcCChHHHHHHHHHhhcC-------C-CCCCCceEEEeCCCCCCcHHHHHHhCCe-------------eeeecCC
Q 018172 59 GRHIVIGTGSTQLYQAALYALSS-------P-GGPEPISVVSAAPYYSQYPAETDYLRSG-------------LYKWDGD 117 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~l~~-------~-gd~~~~~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~ 117 (360)
.++|++|+|+++++..+++.+.+ + ++. |++.+|+|..+...+..++.. +..++..
T Consensus 112 ~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~----vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 187 (460)
T 3gju_A 112 MSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKK----IISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAP 187 (460)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCE----EEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCC
T ss_pred cCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCE----EEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCC
Confidence 35899999999999999998864 3 454 999999999887666554322 2233311
Q ss_pred c-------------------ccccc------CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC
Q 018172 118 A-------------------NTFDK------NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP 167 (360)
Q Consensus 118 ~-------------------~~~~~------~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~ 167 (360)
. +.++. .+++++|+++.++|++|...+ +.+.++|+++|+++|+||+|.+.
T Consensus 188 ~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 267 (460)
T 3gju_A 188 YYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGF 267 (460)
T ss_dssp CGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred ccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 1 12211 145677777777778887543 46778999999999999999843
Q ss_pred CCCc-CC--CCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHH-------HhhccccCChHHHHHHHHHhccc
Q 018172 168 QYTP-IT--GAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRF-------IELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 168 ~~~~-~~--~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
.... .. ...+...-+.+|||+++ .| +|+||+++ ++++++.+... ....+++.|+++|.++.++++.+
T Consensus 268 gr~g~~~~~~~~~~~pdi~t~sK~l~-gG~~~lg~v~~-~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~ 345 (460)
T 3gju_A 268 GRLGTMFGSDHYGIKPDLITIAKGLT-SAYAPLSGVIV-ADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELI 345 (460)
T ss_dssp TTTSSSCHHHHHTCCCSEEEECGGGT-TTSSCCEEEEE-EHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHH
T ss_pred CcccccchHhhcCCCCCeeeeehhhc-CCCCCeEEEEE-CHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 2111 11 11112222457899998 56 89999999 89999998643 33457789999999999988865
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--------------hHHH
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--------------DEDC 302 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 302 (360)
.+. ..+++.++..+..++.+.+.+.+++.+....+.|. |+++.+.+ ...+
T Consensus 346 ~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (460)
T 3gju_A 346 DEM--DLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGM--------------LAAVEFVADKDDRVFFDASQKIGPQV 409 (460)
T ss_dssp HHT--THHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETT--------------EEEEEECSBTTTTBCCCGGGCHHHHH
T ss_pred Hhc--cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeE--------------EEEEEEccCccccccccchHHHHHHH
Confidence 433 67777888888888888788877764443333333 33443321 1457
Q ss_pred HHHHHhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHHhchh
Q 018172 303 EKLLRAERIMARGGRRFGADAKYARVSM--LSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 303 ~~~l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
.+.|.++||.++|+. ..+++||++ ..++|++++++++|++++.+..
T Consensus 410 ~~~l~~~Gv~v~~~~----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 410 ATALAASGVIGRAMP----QGDILGFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp HHHHHHTTEECEECS----SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEecCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 778888999999965 257999994 4599999999999999987643
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-25 Score=209.98 Aligned_cols=283 Identities=13% Similarity=0.094 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC--CCCCCCceEEEeCCCCCCcHHHHHHhCC-------
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS--PGGPEPISVVSAAPYYSQYPAETDYLRS------- 109 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~--~gd~~~~~vl~~~p~~~~~~~~~~~~g~------- 109 (360)
.+|++.++++++. ...++|++|+|+++++..+++.+.. .++. |++.+++|..+...+..++.
T Consensus 110 ~~la~~l~~~~~~-----~~~~~v~~~~sGseA~~~alk~a~~~~g~~~----ii~~~~~yhg~~~~~~~~~~~~~~~~~ 180 (453)
T 4ffc_A 110 VQVAELLNALTPG-----DHDKRTALFNSGAEAVENAIKVARLATGRPA----VVAFDNAYHGRTNLTMALTAKSMPYKS 180 (453)
T ss_dssp HHHHHHHHHHSSC-----SSCEEEEEESSHHHHHHHHHHHHHHHHCCCE----EEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred HHHHHHHHHhCCC-----CCCcEEEEeCcHHHHHHHHHHHHHHhcCCCE----EEEEcCccCCcchHHHhhcCCCccccc
Confidence 4444555544431 1235899999999999999987753 3344 99999999988776655533
Q ss_pred -------eeeeecCC-----c-------------ccccc--CCCeeEEEEcCCCCCCc-cc-ch----HHHHHHhhhcCc
Q 018172 110 -------GLYKWDGD-----A-------------NTFDK--NNGAYIEVVNSPNNPDG-TI-RE----AVLAKVNRSAEG 156 (360)
Q Consensus 110 -------~~~~~~~~-----~-------------~~~~~--~~~~~~i~~~~p~NPtG-~~-~~----~~~~~~~~~~~~ 156 (360)
.+..++.+ . +.++. .+++.++++..|+|++| .+ .+ +.+.++|+++|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~ 260 (453)
T 4ffc_A 181 QFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGV 260 (453)
T ss_dssp TSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 22333322 1 11111 24567777788888766 33 33 467788999999
Q ss_pred EEEEeecccCCCCC-cCC--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHh
Q 018172 157 KLIHDLAYYWPQYT-PIT--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKIL 233 (360)
Q Consensus 157 ~li~D~ay~~~~~~-~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 233 (360)
++|+||+|.+.... ... ...+....+.||||.++ .|+|+||+++ ++++++.+.......+++.|+++|.++.+++
T Consensus 261 llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~-~G~~~G~~~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal 338 (453)
T 4ffc_A 261 VFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIA-GGMPLSAVTG-RAELMDAVYAGGLGGTYGGNPVTCAAAVAAL 338 (453)
T ss_dssp EEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGG-TTSSCEEEEE-EHHHHTTSCTTSSCCSSSSCHHHHHHHHHHH
T ss_pred EEEEecCccCCCcccccchhhhcCCCcchHhhhhhhc-CCcCeEEEEE-CHHHHhhhcccCcCCCCCcCHHHHHHHHHHH
Confidence 99999999853211 111 11222333568999999 4999999998 8999988876666678889999999999988
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-------ch---HHHH
Q 018172 234 GIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-------ED---EDCE 303 (360)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~ 303 (360)
+.+.+. ...++.++.....++.+.+.+.+++.+.... +.++|+|+.+. +. ..+.
T Consensus 339 ~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 402 (453)
T 4ffc_A 339 GVMREL--DLPARARAIEASVTSRLSALAEEVDIIGEVR--------------GRGAMLAIEIVKPGTLEPDAALTKSIA 402 (453)
T ss_dssp HHHHHT--THHHHHHHHHHHHHHHHHHHHHHCSSEEEEE--------------EETTEEEEEEBCTTSCCBCHHHHHHHH
T ss_pred HHhhhh--hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE--------------eeceEEEEEEecCcccCCCHHHHHHHH
Confidence 754332 5555555555555566666556665433222 22335666552 22 5677
Q ss_pred HHHHhhCeeeeCCCCCCCCCCeEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 304 KLLRAERIMARGGRRFGADAKYARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 304 ~~l~~~gI~~~pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
+.|.++||.++|+..|+ +++||+++. ++|++++++++|.+++.+.
T Consensus 403 ~~l~~~Gv~v~~~~~~~---~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (453)
T 4ffc_A 403 AEALSQGVLILTCGTFG---NVIRLLPPLVIGDDLLDEGITALSDIIRAK 449 (453)
T ss_dssp HHHHHTTEECCEECTTS---CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCEEecCCCCC---CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78889999999976553 589997643 8999999999999999764
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-23 Score=196.03 Aligned_cols=290 Identities=12% Similarity=0.068 Sum_probs=198.6
Q ss_pred ccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHH
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETD 105 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~ 105 (360)
|++..|.+ ....++++.++++++. + ++++++|+++++..++..+ +++||+ |+++.|+|..+...++
T Consensus 34 ~~~~~g~~-~l~~~l~~~la~~~g~-------~-~~i~~~~gt~al~~~~~~~~~~~gd~----Vl~~~~~~~~~~~~~~ 100 (418)
T 2c81_A 34 SGYWTGEE-SMERKFAKAFADFNGV-------P-YCVPTTSGSTALMLALEALGIGEGDE----VIVPSLTWIATATAVL 100 (418)
T ss_dssp TSBCCSSC-CHHHHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHTTCCTTCE----EEEESSSCTHHHHHHH
T ss_pred cCcccCCH-HHHHHHHHHHHHHhCC-------C-cEEEeCCHHHHHHHHHHHcCCCCcCE----EEECCCccHhHHHHHH
Confidence 55555520 0128888889988885 2 4666777789999999999 889998 9999999999999999
Q ss_pred HhCCeeeeecCCcccc--cc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-CCcC-C
Q 018172 106 YLRSGLYKWDGDANTF--DK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ-YTPI-T 173 (360)
Q Consensus 106 ~~g~~~~~~~~~~~~~--~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~-~~~~-~ 173 (360)
..|++++.++.+.+.+ +. ++++++|++ +||||...+ +.+.++|+++|+++|+|++|..+. +... .
T Consensus 101 ~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~ 177 (418)
T 2c81_A 101 NVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRA 177 (418)
T ss_dssp HTTCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEET
T ss_pred HcCCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEec
Confidence 9999999988764322 11 357888885 458998877 678888988999999999998654 2111 1
Q ss_pred CCCCccEEEecc--ccccCCCCceEEEEeecCHHHHHHHHHHHhhccc------------c--C---C--------hHHH
Q 018172 174 GAADHDIMLFTL--SKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI------------G--V---S--------KESQ 226 (360)
Q Consensus 174 ~~~~~~i~~~S~--sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~------------~--~---~--------~~~~ 226 (360)
... .++.+.|| ||.++. | |+||++++++++++.+......... . . . ...+
T Consensus 178 ~~~-~~~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 254 (418)
T 2c81_A 178 GTI-GDIGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQ 254 (418)
T ss_dssp TSS-SSEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHH
T ss_pred ccc-cceEEEeccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHH
Confidence 111 24777777 999995 8 9999998558888888766543211 1 0 0 1111
Q ss_pred HHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccC-CCCC-cccccccccCCCCCCcccccCC-------
Q 018172 227 LRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLP-EYPL-EYCNFTGKFTNSHPGFAWLESK------- 297 (360)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~------- 297 (360)
.++. +..+ +.+++..++.+++++++.+.|++++++.+. .+.+ +...|. .+.+.++
T Consensus 255 aa~~--~~~l-----~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 318 (418)
T 2c81_A 255 SAIL--LDQL-----QELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYY---------GYVFRFDPVKFGGL 318 (418)
T ss_dssp HHHH--HHHH-----TTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCS---------EEEEEECGGGTTTC
T ss_pred HHHH--HHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccE---------EEEEEEcccccccc
Confidence 1111 1111 345667777778888999999888666665 2333 221110 1114444
Q ss_pred chHHHHHHHHhh-Cee---eeCCCCC----------------------------CCC-------CCeEEEEec--C-ChH
Q 018172 298 EDEDCEKLLRAE-RIM---ARGGRRF----------------------------GAD-------AKYARVSML--S-REE 335 (360)
Q Consensus 298 ~~~~~~~~l~~~-gI~---~~pg~~f----------------------------~~~-------~~~~R~s~~--~-~~e 335 (360)
+.+.+.+.|.++ ||. +.+|... +.. .+.+|+++. . ++|
T Consensus 319 ~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~e 398 (418)
T 2c81_A 319 NADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPS 398 (418)
T ss_dssp CHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHH
T ss_pred CHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHH
Confidence 236777778788 999 8887511 000 147999985 3 899
Q ss_pred HHHHHHHHHHHHHhch
Q 018172 336 IFNIFLERLSAIQGGS 351 (360)
Q Consensus 336 ~~~~~~~~l~~~~~~~ 351 (360)
|+++++++|++++++.
T Consensus 399 di~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 399 HLSLLVDAVAELARKF 414 (418)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=204.56 Aligned_cols=266 Identities=14% Similarity=0.071 Sum_probs=181.0
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CC-CCCCceEEEeCCCCCCcHHHHHHhCC--------------eeeeecCCc-----
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PG-GPEPISVVSAAPYYSQYPAETDYLRS--------------GLYKWDGDA----- 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~g-d~~~~~vl~~~p~~~~~~~~~~~~g~--------------~~~~~~~~~----- 118 (360)
++|++|+|+++++..+++.+.. +| +. |++.+++|+.+...+..++. .+..++.+.
T Consensus 123 ~~v~~~~sGseA~~~Alk~a~~~~g~~~----ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (451)
T 3oks_A 123 KRSALFNSGSEAVENAVKIARSHTHKPA----VVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDA 198 (451)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHCCCE----EEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHG
T ss_pred CEEEEeCcHHHHHHHHHHHHHHhcCCCe----EEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccc
Confidence 5899999999999999987754 34 44 99999999988766655432 233333320
Q ss_pred -----------cccc-------c--CCCeeEEEEcCCCCCCc-ccch-----HHHHHHhhhcCcEEEEeecccCCCCC-c
Q 018172 119 -----------NTFD-------K--NNGAYIEVVNSPNNPDG-TIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYT-P 171 (360)
Q Consensus 119 -----------~~~~-------~--~~~~~~i~~~~p~NPtG-~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~-~ 171 (360)
+.++ . .+++.++++..|+|++| .+.+ +.+.++|+++|+++|+||+|.+.... .
T Consensus 199 ~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~ 278 (451)
T 3oks_A 199 EFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA 278 (451)
T ss_dssp GGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred ccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc
Confidence 0111 0 22456666667766654 4433 46778899999999999999843211 1
Q ss_pred C--CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHH
Q 018172 172 I--TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRR 249 (360)
Q Consensus 172 ~--~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (360)
. ....+...-+.||||.++ .|+|+||+++ ++++++.+.......+++.|+++|.++.++++.+.+. ...++.++
T Consensus 279 ~~~~~~~~~~pdi~t~sK~l~-~G~~iG~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~--~~~~~~~~ 354 (451)
T 3oks_A 279 MFACEHEGIDPDLIVTAKGIA-GGLPLSAVTG-RAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESE--GLVARAQQ 354 (451)
T ss_dssp SSGGGGGTCCCSEEEECGGGG-TTSSCEEEEE-EHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHT--THHHHHHH
T ss_pred chhhhhcCCCCCeeeehhhhh-CCcceEEEEE-CHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhh--hHHHHHHH
Confidence 1 112222222448999999 5999999998 8999988876666678889999999999988754332 45555555
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC-------Cch---HHHHHHHHhhCeeeeCCCCC
Q 018172 250 LMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES-------KED---EDCEKLLRAERIMARGGRRF 319 (360)
Q Consensus 250 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~l~~~gI~~~pg~~f 319 (360)
.....++.+.+.+.+++.+.... +.+.|+|+.+ ++. ..+.+.|.++||.++|+..|
T Consensus 355 ~~~~l~~~L~~~~~~~~~~~~~~--------------~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 420 (451)
T 3oks_A 355 IEKIMKDRLGRLQAEDDRIGDVR--------------GRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTY 420 (451)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEE--------------EETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTT
T ss_pred HHHHHHHHHHHHHhhCCCeEEEE--------------EeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCC
Confidence 55555555555555555333222 2233556655 222 56777888999999997655
Q ss_pred CCCCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 320 GADAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 320 ~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
+ +++||+++. ++|++++++++|++++.+
T Consensus 421 ~---~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 421 G---NVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp S---CEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred C---CEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 4 589997643 899999999999999864
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-24 Score=205.16 Aligned_cols=281 Identities=14% Similarity=0.066 Sum_probs=193.1
Q ss_pred HHHH----HHHHHHHhhcCCCCCC-CCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH--------HHH
Q 018172 39 PELA----EAINNLHHVVDNAVSD-GRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA--------ETD 105 (360)
Q Consensus 39 ~~lr----~~la~~~~~~~~~~~~-~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~--------~~~ 105 (360)
.+++ +.+++++|. +.+. ..+|++++|+ +++..++.+++++||+ |++++|+|.++.. .+.
T Consensus 89 ~~le~~~~~~~a~~~g~---~~~~~~~~V~~~sGs-~an~~~~~all~pGD~----Vl~~~~~~~~~~~~~~~~~~~~v~ 160 (483)
T 1rv3_A 89 DELETLCQKRALQAYGL---DPQCWGVNVQPYSGS-PANFAVYTALVEPHGR----IMGLDLPDGGHLTHGFMTDKKKIS 160 (483)
T ss_dssp HHHHHHHHHHHHHHTTC---CTTTEEEECCCSSHH-HHHHHHHHHHTCTTCE----EEEECGGGTCCGGGCCBCSSCBCS
T ss_pred HHHHHHHHHHHHHHhCC---CcccCceEEEECCcH-HHHHHHHHHhcCCCCE----EEEecCccCcCcchhhhhcccCcc
Confidence 5555 555566664 1110 0248888887 8888889999999998 9999999988864 234
Q ss_pred HhC--CeeeeecCCcccccc---------C-CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCC-----
Q 018172 106 YLR--SGLYKWDGDANTFDK---------N-NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWP----- 167 (360)
Q Consensus 106 ~~g--~~~~~~~~~~~~~~~---------~-~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~----- 167 (360)
..| .+++.++++.+.... . +++|+|++ +++||+ .+++ +.+.++|+++|+++++|++|..+
T Consensus 161 ~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~ 238 (483)
T 1rv3_A 161 ATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAG 238 (483)
T ss_dssp HHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHT
T ss_pred cccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccC
Confidence 445 555555444322211 2 57899999 899988 6667 78888999999999999998721
Q ss_pred -CCCcCCCCCCccEEEeccccccCCCCceEEEEeecCH--------------HHHHHHHHHHhhc-cccCChHHHHHHHH
Q 018172 168 -QYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDT--------------EVARKMTRFIELG-SIGVSKESQLRAAK 231 (360)
Q Consensus 168 -~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~--------------~~~~~l~~~~~~~-~~~~~~~~~~~~~~ 231 (360)
...++. ..+++++|+||.+ +|.|.||++++++ ++.+.+....... ..+.+...+.++..
T Consensus 239 ~~~~p~~---~~div~~s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~ 313 (483)
T 1rv3_A 239 VVPSPFE---HCHVVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAV 313 (483)
T ss_dssp SSCCGGG---TCSEEEEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHH
T ss_pred CCCCCCC---CCcEEEecCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHH
Confidence 111221 4679999999987 5788899999543 2444454332211 22344444445555
Q ss_pred HhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC----chHHHHHHHH
Q 018172 232 ILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK----EDEDCEKLLR 307 (360)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~ 307 (360)
+++.... ..+++.++++.++++++.+.|.++ ++.+..+... ..++|+++. +...+.+.|.
T Consensus 314 Al~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~------------~~~~~v~~~~~g~~~~~~~~~L~ 377 (483)
T 1rv3_A 314 ALKQAMT---PEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSD------------NHLILVDLRSKGTDGGRAEKVLE 377 (483)
T ss_dssp HHHHHTS---HHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCS------------SSEEEEEGGGGTCCHHHHHHHHH
T ss_pred HHHHHhC---hhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCC------------CceEEEeccCCCCCHHHHHHHHH
Confidence 6664432 567889999999999999999988 5555433111 114555553 2367888899
Q ss_pred hhCeeee----CCCCCCCCCCeEEEEecC--C----hHHHHHHHHHHHHHHhc
Q 018172 308 AERIMAR----GGRRFGADAKYARVSMLS--R----EEIFNIFLERLSAIQGG 350 (360)
Q Consensus 308 ~~gI~~~----pg~~f~~~~~~~R~s~~~--~----~e~~~~~~~~l~~~~~~ 350 (360)
+.||.+. ||......++++|||+.. + ++++++++++|.+++..
T Consensus 378 ~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 378 ACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp HTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999 887432246799999965 5 89999999999999875
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=199.09 Aligned_cols=287 Identities=14% Similarity=0.075 Sum_probs=189.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH----HHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA----ETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~----~~~~~g~~~~~ 113 (360)
..+|+++++++++. ++ .++++++++++..++..++++||+ |+++.|+|..+.. .++..|++++.
T Consensus 84 ~~~le~~lA~l~g~-------~~-~v~~~sG~~Ai~~al~al~~~Gd~----Vi~~~~~y~~~~~~~~~~~~~~G~~~~~ 151 (430)
T 3ri6_A 84 VEDLEQRLKNLTGA-------LG-VLALGSGMAAISTAILTLARAGDS----VVTTDRLFGHTLSLFQKTLPSFGIEVRF 151 (430)
T ss_dssp HHHHHHHHHHHHTC-------SE-EEEESCHHHHHHHHHHHHCCTTCE----EEEETTCCHHHHHHHHTHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHCC-------Cc-EEEECCHHHHHHHHHHHHhCCCCE----EEEcCCCchhHHHHHHHHHHHcCCEEEE
Confidence 48999999999984 33 455556679999999999999998 9999999998887 66778999999
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.+ .+.+.. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+.. ..+...+.++++.|+||.+
T Consensus 152 v~~~d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-~~~~~~g~div~~S~sK~l 230 (430)
T 3ri6_A 152 VDVMDSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-LEAKRLGVDIEVLSSTKFI 230 (430)
T ss_dssp ECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-CCGGGGTCSEEEEECCCEE
T ss_pred eCCCCHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-CChHHcCCEEEEECCcccc
Confidence 9865 334432 568999999999999999998 6788899999999999999986433 1122445789999999999
Q ss_pred CCCCceEEEEee--cCHH------------------HHHHHHH-HHhhccccCChHHHHHHHHHhcccCCCchhHHHHHH
Q 018172 190 GHAGSRIGWALV--KDTE------------------VARKMTR-FIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGR 248 (360)
Q Consensus 190 ~~~G~r~G~~~~--~~~~------------------~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (360)
+.+|..+|.+++ .+.. +++.+.. .....+...++.....+...+ +.+....
T Consensus 231 ~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l--------~~l~~r~ 302 (430)
T 3ri6_A 231 SGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGL--------ETMALRI 302 (430)
T ss_dssp ETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHH--------HHHHHHH
T ss_pred cCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhh--------hhHHHHH
Confidence 866655555554 2311 1233322 112223334444433333322 3344445
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCcc----cccccccCCCCCC-cccccCCchHH---HHHHHHhhCeeeeCCCCCC
Q 018172 249 RLMSERWNMLRQVIRQSGVFGLPEYPLEY----CNFTGKFTNSHPG-FAWLESKEDED---CEKLLRAERIMARGGRRFG 320 (360)
Q Consensus 249 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~l~~~gI~~~pg~~f~ 320 (360)
++..++.+.+.+.|++++.+..+.+++.. +....... +.+. ++|+.+++.+. +.+.|+-.++.+.+|..+.
T Consensus 303 ~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~-g~Gg~~lsf~l~~~~~~~~~~~~l~~~~~~~s~G~~~s 381 (430)
T 3ri6_A 303 ERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQF-RYAGSILTFELESKEASYRFMDALKLIRRATNIHDNKS 381 (430)
T ss_dssp HHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHC-SSCCSEEEEECSSHHHHHHHHHHCSSSEECSCCSCSSC
T ss_pred HHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhC-CCCceEEEEEECCHHHHHHHHHhCCcceecCCCCCCCc
Confidence 56678888999999988766643333210 00000011 3355 78999985433 4444444566666775443
Q ss_pred ----------------------CCCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 321 ----------------------ADAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 321 ----------------------~~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
..++++|+|++. |+.+.+++.|++.+
T Consensus 382 li~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~--E~~~dl~~dl~~al 429 (430)
T 3ri6_A 382 LILSPYHVIYALNSHEERLKLEISPAMMRLSVGI--EEIEDLKEDILQAL 429 (430)
T ss_dssp EEECTGGGC---------CGGGSCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred eeeCCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHhh
Confidence 246789999965 23344555555544
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=208.37 Aligned_cols=267 Identities=10% Similarity=-0.015 Sum_probs=179.1
Q ss_pred CCcEEEcCChHHHHHHHHHhhcC--------CCCCCCceEEEeCCCCCCcHHHHHHhCCe-------------eeeec--
Q 018172 59 GRHIVIGTGSTQLYQAALYALSS--------PGGPEPISVVSAAPYYSQYPAETDYLRSG-------------LYKWD-- 115 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~l~~--------~gd~~~~~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~-- 115 (360)
.++|++|+|+++++..++..+.+ +++. |++.+|+|..+...+...+.. +..++
T Consensus 111 ~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~----vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 186 (459)
T 4a6r_A 111 FDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKT----LIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQP 186 (459)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCE----EEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCC
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCE----EEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCC
Confidence 45899999999999999999875 3454 999999999988766665332 22222
Q ss_pred C--------C--------cccccc-----C-CCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCC
Q 018172 116 G--------D--------ANTFDK-----N-NGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 116 ~--------~--------~~~~~~-----~-~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
. | .+.++. . +++++|+++.++|++|.+.+ +.+.++|+++|+++|+||+|.+..
T Consensus 187 ~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g 266 (459)
T 4a6r_A 187 WWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFG 266 (459)
T ss_dssp CHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred ccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 1 1 112211 1 34455555555566777653 567889999999999999998532
Q ss_pred CCc-CC--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHH---HHHhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 169 YTP-IT--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMT---RFIELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 169 ~~~-~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
... .. ...+...-+.+|||.++..|+|+||+++ ++++++.+. ......+++.|+++|.++.++|+.+.+. .
T Consensus 267 r~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~--~ 343 (459)
T 4a6r_A 267 RTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFV-GKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDE--G 343 (459)
T ss_dssp TTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEE-CHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHT--C
T ss_pred cccccchHhhcCCCCCeeehhhhhcCCCCCccceee-CHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcc--h
Confidence 111 11 1111111244788999844499999999 899999987 3344457889999999999988854332 5
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--------------hHHHHHHHH
Q 018172 243 FFEYGR-RLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--------------DEDCEKLLR 307 (360)
Q Consensus 243 ~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~ 307 (360)
.+++.+ +.....++.+.+.|.+++.+....+.|. |+++.+.+ ...+.+.|.
T Consensus 344 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 409 (459)
T 4a6r_A 344 IVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGM--------------VQAFTLVKNKAKRELFPDFGEIGTLCRDIFF 409 (459)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETT--------------EEEEEECSBTTTTBCCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEE--------------EEEEEEecCccccccccchHHHHHHHHHHHH
Confidence 566666 5555555666566665554333333333 44443321 245677788
Q ss_pred hhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHHhchh
Q 018172 308 AERIMARGGRRFGADAKYARVSM--LSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 308 ~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
++||.++|+. +++||++ ..++|++++++++|++++.+..
T Consensus 410 ~~Gv~v~~~g------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 410 RNNLIMRACG------DHIVSAPPLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp HTTEECEEET------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HCCeEEecCC------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999852 6999994 4599999999999999997653
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-24 Score=203.16 Aligned_cols=273 Identities=14% Similarity=-0.010 Sum_probs=187.4
Q ss_pred cEEEcCChHHHHHHHHHhhcC--------CC---CCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCcccc--cc----
Q 018172 61 HIVIGTGSTQLYQAALYALSS--------PG---GPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTF--DK---- 123 (360)
Q Consensus 61 ~i~~t~G~t~~l~~~~~~l~~--------~g---d~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~--~~---- 123 (360)
.+++|+|+|+++..++.++.+ +| +. ..|++++ +|..+...++.+|++++.++.+.+.+ +.
T Consensus 105 ~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~--~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~ 181 (452)
T 2dgk_A 105 VGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDK--PNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMI 181 (452)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSC--CEEEESS-CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHH
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--cEEEECC-CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHH
Confidence 499999999999999888754 45 21 1399999 99999999999999999998764222 21
Q ss_pred ---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhc------CcEEEEeecccCCCC-------CcCCCCCCccEEEeccc
Q 018172 124 ---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSA------EGKLIHDLAYYWPQY-------TPITGAADHDIMLFTLS 186 (360)
Q Consensus 124 ---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~------~~~li~D~ay~~~~~-------~~~~~~~~~~i~~~S~s 186 (360)
+++|++|++++|+||||.+.+ +.+.++|+++ ++++++|++|..... .......+.+.++.|++
T Consensus 182 ~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~h 261 (452)
T 2dgk_A 182 EACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGH 261 (452)
T ss_dssp HHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETT
T ss_pred HHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcc
Confidence 467899999999999999988 7788888874 999999999985321 11112335567888999
Q ss_pred cccCCCCceEEEEeecCHHHH-HHHHHHHhhc---------cccC---ChHHHHHHHHHhcccCCCchhHHHHHHHHHHH
Q 018172 187 KCTGHAGSRIGWALVKDTEVA-RKMTRFIELG---------SIGV---SKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 187 K~~~~~G~r~G~~~~~~~~~~-~~l~~~~~~~---------~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
| |++.|.++||+++++++++ +.+.....+. ..+. ....+.++...+. ...+++..+++.+
T Consensus 262 K-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg------~~g~~~~~~~~~~ 334 (452)
T 2dgk_A 262 K-FGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG------REGYTKVQNASYQ 334 (452)
T ss_dssp T-TTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred c-ccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh------HHHHHHHHHHHHH
Confidence 9 6668899999999555433 3331101110 0111 2233444433332 2667888999999
Q ss_pred HHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-------hHHHHHHHHhhCeeeeCCCCCC-C-CCC
Q 018172 254 RWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-------DEDCEKLLRAERIMARGGRRFG-A-DAK 324 (360)
Q Consensus 254 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~gI~~~pg~~f~-~-~~~ 324 (360)
+++++.+.|++++++.+..+... .+..+++.+.+++ ...+.+.|.++||.++...... . ..+
T Consensus 335 ~a~~l~~~L~~~~~~~~~~~~~~---------~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~ 405 (452)
T 2dgk_A 335 VAAYLADEIAKLGPYEFICTGRP---------DEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIV 405 (452)
T ss_dssp HHHHHHHHHHTTSSEEEEEECCT---------TTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCE
T ss_pred HHHHHHHHHHhCCCeEEecCCCC---------CCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeE
Confidence 99999999999976666432100 0112244444432 2678888889999765322111 1 245
Q ss_pred eEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 325 YARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 325 ~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
++|+++.. ++|++++++++|++++.+.+
T Consensus 406 ~lRis~~~~~t~e~id~li~~l~~~~~~~~ 435 (452)
T 2dgk_A 406 VMRIMCRRGFEMDFAELLLEDYKASLKYLS 435 (452)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999966 78999999999999987543
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-23 Score=193.73 Aligned_cols=277 Identities=16% Similarity=0.121 Sum_probs=180.1
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC---cHHHHHHhCC--eeeeecCC
Q 018172 43 EAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ---YPAETDYLRS--GLYKWDGD 117 (360)
Q Consensus 43 ~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~---~~~~~~~~g~--~~~~~~~~ 117 (360)
+.++++++. +...++++|+++++..++..++++||+ |+++.|+|.. +.......|. +++.++.+
T Consensus 85 ~~~~~~~~~-------~~~~v~~~~Gs~a~~~al~~~~~~gd~----Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 153 (425)
T 3ecd_A 85 ERVKRLFNA-------GHANVQPHSGAQANGAVMLALAKPGDT----VLGMSLDAGGHLTHGAKPALSGKWFNALQYGVS 153 (425)
T ss_dssp HHHHHHHTC-------SEEECCCSSHHHHHHHHHHHHCCTTCE----EEEECC------------------CEEEEECCC
T ss_pred HHHHHHhCC-------CCceeecCchHHHHHHHHHHccCCCCE----EEEcccccccceecchhhhhcccceeeeecCCC
Confidence 445666764 223355888899999999999999998 9999999988 2222223454 44555544
Q ss_pred cc--cccc--------CCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccC-----CCCCcCCCCCCccEEE
Q 018172 118 AN--TFDK--------NNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYW-----PQYTPITGAADHDIML 182 (360)
Q Consensus 118 ~~--~~~~--------~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~-----~~~~~~~~~~~~~i~~ 182 (360)
.+ .++. .+++++|++++|+||+-..+ +.+.++|+++|+++|+|++|.. +..... ....++++
T Consensus 154 ~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l-~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~--~~~~di~~ 230 (425)
T 3ecd_A 154 RDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRKLDF-ARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP--VEHAHVVT 230 (425)
T ss_dssp TTTSSCCHHHHHHHHHHHCCSEEEEECSCCCSCCCH-HHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--GGTCSEEE
T ss_pred cccCccCHHHHHHHHhhcCCcEEEEccccCCCcCCH-HHHHHHHHHcCCEEEEECcChHhhhhcccccCc--hhcCcEEE
Confidence 32 2221 24789999999999865444 5677788889999999999642 111111 11246899
Q ss_pred eccccccCCCCceEEEEeecCHHHHHHHHHHHhhccc-cCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHH
Q 018172 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI-GVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQV 261 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (360)
.|+||.+ +|.|+||++++++++.+.+......... +.+...+.++..++.... ..++++.+++++++++++.+.
T Consensus 231 ~s~sK~l--~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~---~~~~~~~~~~~~~~~~~l~~~ 305 (425)
T 3ecd_A 231 STTHKTL--RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEAL---TDDFKTYIDRVLANAQALGDV 305 (425)
T ss_dssp EESSGGG--CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHT---SHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCccc--CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHH
Confidence 9999988 5778999999557888888765543222 333444444443443221 167788999999999999999
Q ss_pred HHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeee----CCCCCCC-CCCeEEEEecC
Q 018172 262 IRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMAR----GGRRFGA-DAKYARVSMLS 332 (360)
Q Consensus 262 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~----pg~~f~~-~~~~~R~s~~~ 332 (360)
|.+.+ +.+..+. +.++++|+.++. .+.+.+.|.++||.++ ||..+.. ..+++|+++..
T Consensus 306 L~~~g-~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~ 372 (425)
T 3ecd_A 306 LKAGG-VDLVTGG------------TDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPA 372 (425)
T ss_dssp HHHTT-CEEGGGS------------CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHH
T ss_pred HHhCC-CeeccCC------------CCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchh
Confidence 98863 4433221 223467777653 2778888999999999 5433322 34689998532
Q ss_pred ------ChHHHHHHHHHHHHHHhch
Q 018172 333 ------REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 333 ------~~e~~~~~~~~l~~~~~~~ 351 (360)
+++++++++++|++++++.
T Consensus 373 ~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 373 GTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred heeccCCHHHHHHHHHHHHHHHhcc
Confidence 4899999999999998765
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-23 Score=193.86 Aligned_cols=285 Identities=12% Similarity=0.048 Sum_probs=192.5
Q ss_pred ccCCCC--ccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHH
Q 018172 27 LSDMGN--VCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 27 y~~~~g--~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
|.++.| . .++|++++++++. +++++|+|+++++..++.++ +++||+ |+++.|+|..+...
T Consensus 26 ~~~~~g~~~-----~~l~~~la~~~~~--------~~v~~~~ggt~al~~~~~~l~~~~gd~----Vl~~~~~~~~~~~~ 88 (394)
T 1o69_A 26 YIAPLGEFV-----NRFEQSVKDYSKS--------ENALALNSATAALHLALRVAGVKQDDI----VLASSFTFIASVAP 88 (394)
T ss_dssp TTSCTTHHH-----HHHHHHHHHHHCC--------SEEEEESCHHHHHHHHHHHTTCCTTCE----EEEESSSCGGGTHH
T ss_pred CccCCChHH-----HHHHHHHHHHhCC--------CcEEEeCCHHHHHHHHHHHcCCCCCCE----EEECCCccHHHHHH
Confidence 555455 5 9999999999984 48999999999999999999 899998 99999999999999
Q ss_pred HHHhCCeeeeecCCccc-ccc-------CC---CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-CC
Q 018172 104 TDYLRSGLYKWDGDANT-FDK-------NN---GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ-YT 170 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~-~~~-------~~---~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~-~~ 170 (360)
+...|++++.++.+.+. ++. ++ ++++|++++ |||...+ +.+.++|+++|+++|+|++|..+. +.
T Consensus 89 ~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~ 165 (394)
T 1o69_A 89 ICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYK 165 (394)
T ss_dssp HHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEET
T ss_pred HHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeC
Confidence 99999999999876321 111 12 689998875 8998776 678888988999999999998422 11
Q ss_pred c--CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCCh-----------HHHHHHHHHhcccC
Q 018172 171 P--ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSK-----------ESQLRAAKILGIVS 237 (360)
Q Consensus 171 ~--~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~ 237 (360)
. .....+.++...|.+|.+ +|.|+||++++++++++.+.........+.+. .....++..+..+
T Consensus 166 ~~~~~~~~~~~~~s~s~~K~l--~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l- 242 (394)
T 1o69_A 166 NKALGTFGEFGVYSYNGNKII--TTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQM- 242 (394)
T ss_dssp TEETTSSSSEEEEECCTTSSS--CCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH-
T ss_pred CcccccccCcEEEEEeCCccC--CCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHH-
Confidence 1 111122233344446655 46789999995589999888765432111110 1111122222211
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCC--cccccCC------------------
Q 018172 238 DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPG--FAWLESK------------------ 297 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------ 297 (360)
+++++..++++++++++.+.|+++ +.+..+... ..++ ++++.++
T Consensus 243 ----~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 306 (394)
T 1o69_A 243 ----EVLEQRVLKKREIYEWYKEFLGEY--FSFLDELEN----------SRSNRWLSTALINFDKNELNACQKDINISQK 306 (394)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTT----------EECCCSSEEEEESCCGGGSCCCCEEEECCCC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCC----------CcceeEEEEEEecchhhcccccccccccccc
Confidence 446667888899999999999876 333322100 0011 2344443
Q ss_pred ------chHHHHHHHHhhCeeeeCCCCC---C--CCC--------------CeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 298 ------EDEDCEKLLRAERIMARGGRRF---G--ADA--------------KYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 298 ------~~~~~~~~l~~~gI~~~pg~~f---~--~~~--------------~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
+.+.+.+.|.++||.+++|... . ... ..+|+.... ++||+++++++|++++..
T Consensus 307 ~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 307 NITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA 386 (394)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred ccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 2267888888999999998422 0 000 234444433 899999999999998765
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-24 Score=205.67 Aligned_cols=289 Identities=11% Similarity=0.095 Sum_probs=191.3
Q ss_pred cccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcH
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~ 101 (360)
.|.+..+. .+||++++++++. ++|++|+|+++++..++..+++ +||+. ..|+++.+.|..+.
T Consensus 71 ~y~~~~~~-----~~l~~~la~~~~~--------~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~-~~viv~~~~~~~~~ 136 (467)
T 1ax4_A 71 AYAGSRNY-----YDLKDKAKELFNY--------DYIIPAHQGRGAENILFPVLLKYKQKEGKAK-NPVFISNFHFDTTA 136 (467)
T ss_dssp CSSSCHHH-----HHHHHHHHHHHCC--------CEEEEESSHHHHHHHHHHHHHHHHHHTTCCS-SCEEEESSCCHHHH
T ss_pred ccccCccH-----HHHHHHHHHHcCC--------CcEEEcCCcHHHHHHHHHHHHHhhccCCCcc-ceEEEeccccchhh
Confidence 46666665 9999999999984 4899999999999999999988 88741 11677767767777
Q ss_pred HHHHHhCCeeeeecCCc----------c-cccc-------C----CCeeEEEEcCCCCCC-cccch----HHHHHHhhhc
Q 018172 102 AETDYLRSGLYKWDGDA----------N-TFDK-------N----NGAYIEVVNSPNNPD-GTIRE----AVLAKVNRSA 154 (360)
Q Consensus 102 ~~~~~~g~~~~~~~~~~----------~-~~~~-------~----~~~~~i~~~~p~NPt-G~~~~----~~~~~~~~~~ 154 (360)
..+...|.+++.++.+. + .++. + +++++|++++||||| |.+++ +.+.++|+++
T Consensus 137 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~ 216 (467)
T 1ax4_A 137 AHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQH 216 (467)
T ss_dssp HHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH
T ss_pred HHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHc
Confidence 88888899887654321 1 1111 1 368999999999999 88877 3577889999
Q ss_pred CcEEEEeecccC-----------CCC-CcCCCC-----CCccEEEeccccccCCC-CceEEEEeecCH-HHHHHHHHHHh
Q 018172 155 EGKLIHDLAYYW-----------PQY-TPITGA-----ADHDIMLFTLSKCTGHA-GSRIGWALVKDT-EVARKMTRFIE 215 (360)
Q Consensus 155 ~~~li~D~ay~~-----------~~~-~~~~~~-----~~~~i~~~S~sK~~~~~-G~r~G~~~~~~~-~~~~~l~~~~~ 215 (360)
|+++|+|+++.. ... .+.... ...++++.|+||.++++ | |+++++++ ++++.+.....
T Consensus 217 gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G---g~~~~~d~~~l~~~~~~~~~ 293 (467)
T 1ax4_A 217 GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG---GLVAIRDNEEIFTLARQRCV 293 (467)
T ss_dssp TCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC---EEEEESSCHHHHHHHHHHHH
T ss_pred CCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc---eEEEeCCHHHHHHHHHhhcc
Confidence 999999997542 110 111110 12346779999999876 4 77777436 88888766543
Q ss_pred hc----cc-cCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCC
Q 018172 216 LG----SI-GVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPG 290 (360)
Q Consensus 216 ~~----~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (360)
.. .. +.+...+.++...++...+ ++.++ ...++++++.+.|++. ++.+..|.+++
T Consensus 294 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~----~~~~~~~~l~~~L~~~-~~~~~~~~~~~------------- 353 (467)
T 1ax4_A 294 PMEGFVTYGGLAGRDMAAMVQGLEEGTE--EEYLH----YRIGQVKYLGDRLREA-GIPIQYPTGGH------------- 353 (467)
T ss_dssp HHTCSTTTTTCCHHHHHHHHHHHHHTTC--HHHHH----HHHHHHHHHHHHHHHT-TCCBCSSCCSS-------------
T ss_pred ccccccccCCccchHHHHHHHHHHHhhh--hhHHH----HHHHHHHHHHHHHHhC-CCCcccCCCce-------------
Confidence 21 12 2233333333334542221 12232 2235667888888773 45555555554
Q ss_pred ccccc-------CCc----hHHHHHHH-HhhCeeeeC-CCCC-CC----------CCCeEEEEec---CChHHHHHHHHH
Q 018172 291 FAWLE-------SKE----DEDCEKLL-RAERIMARG-GRRF-GA----------DAKYARVSML---SREEIFNIFLER 343 (360)
Q Consensus 291 ~~~~~-------~~~----~~~~~~~l-~~~gI~~~p-g~~f-~~----------~~~~~R~s~~---~~~e~~~~~~~~ 343 (360)
++|++ ++. ...+.+.| .++||.+.| |..+ +. ..+++||++. .+++++++++++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~ 433 (467)
T 1ax4_A 354 AVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADA 433 (467)
T ss_dssp EEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHH
T ss_pred EEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHH
Confidence 44544 321 24455555 899999999 6532 21 1379999997 489999999999
Q ss_pred HHHHHhch
Q 018172 344 LSAIQGGS 351 (360)
Q Consensus 344 l~~~~~~~ 351 (360)
|.+++++.
T Consensus 434 l~~~~~~~ 441 (467)
T 1ax4_A 434 LIGLKEKF 441 (467)
T ss_dssp HHTTHHHH
T ss_pred HHHHHHhh
Confidence 99988753
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=198.19 Aligned_cols=275 Identities=14% Similarity=0.116 Sum_probs=179.4
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH---HHHHHh--CCeeeeecCC
Q 018172 43 EAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP---AETDYL--RSGLYKWDGD 117 (360)
Q Consensus 43 ~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~---~~~~~~--g~~~~~~~~~ 117 (360)
+.++++++. +.++|++++| ++++..++..++++||+ |+++.|+|..+. ...... +...+.++.+
T Consensus 83 ~~la~~~~~------~~~~v~~~sG-s~a~~~a~~~~~~~gd~----v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 151 (420)
T 3gbx_A 83 DRAKELFGA------DYANVQPHSG-SQANFAVYTALLQPGDT----VLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID 151 (420)
T ss_dssp HHHHHHHTC------SEEECCCSSH-HHHHHHHHHHHCCTTCE----EEEEEEC------------CHHHHSEEEEEEEC
T ss_pred HHHHHHhCC------CCceeEecCc-HHHHHHHHHHhcCCCCE----EEecchhhcceeccchhhhhcccceeEEeccCC
Confidence 466666664 3445656666 88999999999999998 999999998743 222223 3444455443
Q ss_pred c------ccccc---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCC----CCCcCCCCCCccEEEe
Q 018172 118 A------NTFDK---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWP----QYTPITGAADHDIMLF 183 (360)
Q Consensus 118 ~------~~~~~---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~----~~~~~~~~~~~~i~~~ 183 (360)
. +.++. ..++++|++++||||+ ..+ +.+.++|+++|+++|+||+|..+ ...+. .....++++.
T Consensus 152 ~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~--~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~di~~~ 228 (420)
T 3gbx_A 152 ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSG--VVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPN-PVPHAHVVTT 228 (420)
T ss_dssp TTCSCCHHHHHHHHHHHCCSEEEECCTTCCS--CCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCC-STTTSSEEEE
T ss_pred ccCCcCHHHHHHHHHhcCCeEEEEecCccCC--ccCHHHHHHHHHHcCCEEEEECCcchhceecccCCc-ccccCCEEEe
Confidence 2 22221 1258999999999985 334 67788899899999999998621 11111 1123679999
Q ss_pred ccccccCCCCceEEEEeecC--HHHHHHHHHHHhhcccc-CChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHH
Q 018172 184 TLSKCTGHAGSRIGWALVKD--TEVARKMTRFIELGSIG-VSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQ 260 (360)
Q Consensus 184 S~sK~~~~~G~r~G~~~~~~--~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (360)
|+||.++ |.+.||+++++ .++.+.+......+..+ .+...+.++..++.... +.++++.+++++++++++.+
T Consensus 229 s~sK~~~--g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~---~~~~~~~~~~~~~~~~~l~~ 303 (420)
T 3gbx_A 229 TTHKTLA--GPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAM---EPEFKVYQQQVAKNAKAMVE 303 (420)
T ss_dssp ESSGGGC--SCSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHHHH
T ss_pred ecccCCC--CCCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHH---hHhHHHHHHHHHHHHHHHHH
Confidence 9999985 44459999843 38888877654433333 33444444443443222 26778999999999999999
Q ss_pred HHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeeeC-------CCCCCCCCCeEEEE
Q 018172 261 VIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMARG-------GRRFGADAKYARVS 329 (360)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~p-------g~~f~~~~~~~R~s 329 (360)
.|++. ++.+..+. ..++++|+.++. .+.+.+.|+++||.+.| |..|+ +..+||+
T Consensus 304 ~L~~~-g~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~--~~~iRi~ 368 (420)
T 3gbx_A 304 VFLNR-GYKVVSGG------------TENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV--TSGIRIG 368 (420)
T ss_dssp HHHHT-TCEEGGGS------------CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTT--CSEEEEE
T ss_pred HHHhc-CCeeccCC------------CCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCC--CcceEEe
Confidence 99885 34433211 223467777643 27788889999999998 44443 3469999
Q ss_pred ecC------ChHHHHHHHHHHHHHHhch
Q 018172 330 MLS------REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 330 ~~~------~~e~~~~~~~~l~~~~~~~ 351 (360)
+.. +++++++++++|++++.+.
T Consensus 369 ~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 369 SPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp CHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 853 4799999999999998663
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-24 Score=204.53 Aligned_cols=271 Identities=11% Similarity=0.030 Sum_probs=182.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC-
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG- 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~- 116 (360)
..++|+.+++ ++. + +++++|+|+|+++..++.+++++||. |+++.|+|.++...+...|++++.++.
T Consensus 59 ~~~~~~~la~-~g~------~-~~v~~~~G~t~a~~~~~~a~~~~gd~----Vlv~~~~h~s~~~~~~~~G~~~~~v~~~ 126 (446)
T 2x3l_A 59 ILKSMKQVEK-HSD------Y-DGYFLVNGTTSGILSVIQSFSQKKGD----ILMARNVHKSVLHALDISQQEGHFIETH 126 (446)
T ss_dssp HHHHHHHHCS-CTT------E-EEEEESSHHHHHHHHHHHTTTTSSSC----EEECTTCCHHHHHHHHHHTCCEEECEEE
T ss_pred HHHHHHHHHh-cCC------C-ceEEEeCCHHHHHHHHHHHhcCCCCE----EEEecCccHHHHHHHHHcCCeEEEEeCe
Confidence 3899999999 885 3 58999999999999999999999998 999999999999999999999988776
Q ss_pred -Ccc-----ccc----cCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccC-CCCC--cC-CCCCCccEE
Q 018172 117 -DAN-----TFD----KNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYW-PQYT--PI-TGAADHDIM 181 (360)
Q Consensus 117 -~~~-----~~~----~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~-~~~~--~~-~~~~~~~i~ 181 (360)
+.+ .++ .+++++++++++| |+||.+++ +.+.++|+++|+++|+|++|+. ..+. +. ....+.+++
T Consensus 127 ~~~~~~~~~~~d~~~l~~~~~~~v~~~~~-n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~ 205 (446)
T 2x3l_A 127 QSPLTNHYNKVNLSRLNNDGHKLVVLTYP-NYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYV 205 (446)
T ss_dssp ECTTTSSEEEEEC-------CCEEEEESS-CTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEE
T ss_pred eccccCcCCCCCHHHHcCCCceEEEEECC-CCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEE
Confidence 432 111 3467899999995 56999988 7788889889999999999985 1111 11 112345799
Q ss_pred EeccccccCCCCceEEEEeecCHHHHH--HHHHHHh-hccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVAR--KMTRFIE-LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~--~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
+.|+||.++ .+.++||+++ ++++++ .+..... ..+.+.+.....++.++++.+... ..++..++.+++.+++
T Consensus 206 ~~S~~K~l~-~~~g~g~l~~-~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~---g~~~~~~~~~~l~~~l 280 (446)
T 2x3l_A 206 VQSFHKTLP-ALTMGSVLYI-HKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTY---DSTLFFAKRAQLIECL 280 (446)
T ss_dssp EECHHHHSS-SCTTCEEEEE-ETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHH
T ss_pred EECCccccc-cccccEEEEE-cCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHH
Confidence 999999554 3344899998 444433 3332221 223334444333333333322110 0111334444444444
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeee-CCCCCCCCCCeEEEEecC--C
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMAR-GGRRFGADAKYARVSMLS--R 333 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~-pg~~f~~~~~~~R~s~~~--~ 333 (360)
.+. ++.+..+. .+.++|+.+++ ...+.+.|+++||.+. +| .+++|++++. +
T Consensus 281 ~~~-----g~~~~~~~-------------~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g------~~~iRi~~~~~~t 336 (446)
T 2x3l_A 281 ENK-----GFEMLQVD-------------DPLKLLIKYEGFTGHDIQNWFMNAHIYLELAD------DYQALAILPLWHH 336 (446)
T ss_dssp HHH-----TCEEEECS-------------STTEEEEECTTSCHHHHHHHHHHTTEEESEEC------SSCEEEECCCCCT
T ss_pred HHc-----CCEECcCC-------------CCeEEEEEeCCcCHHHHHHHHHHCCCEEEecC------CCEEEEEeecCCC
Confidence 444 33332221 12356777653 3677788888899987 43 3689999976 8
Q ss_pred hHHHHHHHHHHHHHHhch
Q 018172 334 EEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 334 ~e~~~~~~~~l~~~~~~~ 351 (360)
++++ +++++|++++++.
T Consensus 337 ~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 337 DDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp TCCC-CHHHHHHHHHTCC
T ss_pred HHHH-HHHHHHHHHHHhh
Confidence 8999 9999999998765
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.4e-24 Score=201.16 Aligned_cols=276 Identities=11% Similarity=0.019 Sum_probs=184.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc---------CCC-CCCCceEEEeCCCCCCcHH-HHHH
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS---------SPG-GPEPISVVSAAPYYSQYPA-ETDY 106 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~---------~~g-d~~~~~vl~~~p~~~~~~~-~~~~ 106 (360)
..+|++.++++++ . ++|++|+|+++++..++..+. ++| +. |++.+|+|..... .+..
T Consensus 109 ~~~l~~~la~~~g-------~-~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~----vi~~~~~yhg~~~~~~~~ 176 (433)
T 1z7d_A 109 LGICERYLTNLLG-------Y-DKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAK----IVVCKNNFSGRTLGCISA 176 (433)
T ss_dssp HHHHHHHHHHHHT-------C-SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCE----EEEETTC-----------
T ss_pred HHHHHHHHHhhcC-------C-CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCe----EEEEeCCcCCcchhhhcc
Confidence 3677888887775 3 489999999999999988764 356 66 9999999987644 3333
Q ss_pred hC------------CeeeeecC-Ccccccc---CCCeeEEEEcCCCCCCcccc-h----HHHHHHhhhcCcEEEEeeccc
Q 018172 107 LR------------SGLYKWDG-DANTFDK---NNGAYIEVVNSPNNPDGTIR-E----AVLAKVNRSAEGKLIHDLAYY 165 (360)
Q Consensus 107 ~g------------~~~~~~~~-~~~~~~~---~~~~~~i~~~~p~NPtG~~~-~----~~~~~~~~~~~~~li~D~ay~ 165 (360)
.| .++..++. |.+.++. ++++++|+++..+|+||.+. + +.+.++|+++|+++|+||+|.
T Consensus 177 ~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~ 256 (433)
T 1z7d_A 177 STTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT 256 (433)
T ss_dssp ---------------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred cCCccccccCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc
Confidence 33 24444543 3333322 45677777665567899864 3 577889999999999999998
Q ss_pred CCCCC-c-CC-CC--CCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCC
Q 018172 166 WPQYT-P-IT-GA--ADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 166 ~~~~~-~-~~-~~--~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
+.... . .. .. ...++ .||||.++ +| +|+||+++ ++++++.+.......+++.|++++.++.++++.+.+
T Consensus 257 g~g~~g~~~~~~~~~~~~di--~t~sK~l~-~G~~~~G~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~- 331 (433)
T 1z7d_A 257 GLGRTGKLLCVHHYNVKPDV--ILLGKALS-GGHYPISAVLA-NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN- 331 (433)
T ss_dssp TTTTTSSSSGGGGGTCCCSE--EEECGGGG-TTSSCCEEEEE-CHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH-
T ss_pred CCCcCCcchhhHhcCCCCCE--EEECcccc-CCCCCeEEEEE-CHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHh-
Confidence 42211 1 11 11 12233 38999999 89 99999999 788888776543445678899999888888874422
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcC-CcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeee
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSG-VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMAR 314 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~ 314 (360)
++..++++++++++.+.|+++. ...... ..++.++|+|+.+++ ...+.+.|.++||.+.
T Consensus 332 -----~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-----------~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~ 395 (433)
T 1z7d_A 332 -----EKLCENAEKLGGPFLENLKRELKDSKIVR-----------DVRGKGLLCAIEFKNELVNVLDICLKLKENGLITR 395 (433)
T ss_dssp -----TTHHHHHHHHHHHHHHHHHHHHTTCTTEE-----------EEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECC
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHHhCCCeE-----------EEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEe
Confidence 2456667777788888877651 111100 011334567777653 3567777778999999
Q ss_pred CCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhch
Q 018172 315 GGRRFGADAKYARVSML--SREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 315 pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~~ 351 (360)
|+ ..+++|+++. .++|++++++++|++++++.
T Consensus 396 ~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 396 DV-----HDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp EE-----TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cC-----CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 85 2579999764 39999999999999998653
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=200.69 Aligned_cols=274 Identities=13% Similarity=0.042 Sum_probs=192.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc---------CCC-CCCCceEEEeCCCCCCcH-HHHHH
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS---------SPG-GPEPISVVSAAPYYSQYP-AETDY 106 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~---------~~g-d~~~~~vl~~~p~~~~~~-~~~~~ 106 (360)
..++++.++++++ . ++|++++|+++++..++..+. .+| +. |++.+|+|.... ..+..
T Consensus 120 ~~~l~~~la~~~g-------~-~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~----vi~~~~~yhg~~~~~~~~ 187 (439)
T 2oat_A 120 LGEYEEYITKLFN-------Y-HKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAK----IVFAAGNFWGRTLSAISS 187 (439)
T ss_dssp HHHHHHHHHHHHT-------C-SEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCE----EEEETTCCCCSSHHHHTT
T ss_pred HHHHHHHHHHhcC-------C-CEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCe----EEEEcCCCCCCCHhHhhc
Confidence 3788888888775 3 489999999999999998875 345 55 999999998764 44444
Q ss_pred hC------------CeeeeecC-Ccccccc---CCCeeEEEEcCCCCCCcccc-h----HHHHHHhhhcCcEEEEeeccc
Q 018172 107 LR------------SGLYKWDG-DANTFDK---NNGAYIEVVNSPNNPDGTIR-E----AVLAKVNRSAEGKLIHDLAYY 165 (360)
Q Consensus 107 ~g------------~~~~~~~~-~~~~~~~---~~~~~~i~~~~p~NPtG~~~-~----~~~~~~~~~~~~~li~D~ay~ 165 (360)
.| .+++.++. |.+.++. ++++++|+++..+|++|.+. + +.+.++|+++|+++|+||+|.
T Consensus 188 ~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~ 267 (439)
T 2oat_A 188 STDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT 267 (439)
T ss_dssp CCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred CCChhcccCCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 44 34555553 3333332 35677777665567899765 2 577889999999999999997
Q ss_pred CCCCC--cCC-CC--CCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCC
Q 018172 166 WPQYT--PIT-GA--ADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 166 ~~~~~--~~~-~~--~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
+.... ... .. ...++ .|+||.++ .| +|+||+++ ++++++.+.......+++.|++++.++.++++.+.+
T Consensus 268 g~g~~g~~~~~~~~~~~~Di--~t~sK~l~-~G~~~~G~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~- 342 (439)
T 2oat_A 268 GLARTGRWLAVDYENVRPDI--VLLGKALS-GGLYPVSAVLC-DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEE- 342 (439)
T ss_dssp TTTTTSSSSGGGGGTCCCSE--EEECGGGG-TTSSCCEEEEE-CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH-
T ss_pred CCccCCcchhHHHhCCCCcE--EEeccccc-CCCCCeEEEEE-CHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhh-
Confidence 42211 111 11 12233 39999999 78 99999999 788888776543445678899999988888874421
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----hHHHHHHHHhhCeeee
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----DEDCEKLLRAERIMAR 314 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gI~~~ 314 (360)
++..++++++++++.+.|++++ ..... ..++.++|+|+.+++ ...+.+.|.++||.+.
T Consensus 343 -----~~~~~~~~~~~~~l~~~L~~l~-~~~~~-----------~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~ 405 (439)
T 2oat_A 343 -----ENLAENADKLGIILRNELMKLP-SDVVT-----------AVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAK 405 (439)
T ss_dssp -----TTHHHHHHHHHHHHHHHHTTSC-TTTEE-----------EEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECC
T ss_pred -----hhHHHHHHHHHHHHHHHHHHhc-CCCcE-----------EEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEe
Confidence 2456778888899999998763 21110 011334566776643 3567777778999999
Q ss_pred CCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhc
Q 018172 315 GGRRFGADAKYARVSML--SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 315 pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~ 350 (360)
|+ ..+++|+++. .++|++++++++|++++.+
T Consensus 406 ~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 406 PT-----HGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp BS-----SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred cC-----CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 84 2579999764 4999999999999998764
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=194.33 Aligned_cols=287 Identities=13% Similarity=0.070 Sum_probs=196.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHH-----HhCCeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETD-----YLRSGLY 112 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~-----~~g~~~~ 112 (360)
..+|++.++++.+. + ++++++++++++.. +..++++||+ |+++.|+|......+. ..|.+++
T Consensus 69 ~~~l~~~la~l~g~-------~-~~~~~~sG~~Ai~~-~~~l~~~gd~----Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 135 (400)
T 3nmy_A 69 RFAYERCVAALEGG-------T-RAFAFASGMAATST-VMELLDAGSH----VVAMDDLYGGTFRLFERVRRRTAGLDFS 135 (400)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESSHHHHHHH-HHTTSCTTCE----EEEESSCCHHHHHHHHHTHHHHHCCEEE
T ss_pred HHHHHHHHHHHhCC-------C-CEEEecCHHHHHHH-HHHHcCCCCE----EEEeCCCchHHHHHHHHhhHhhcCeEEE
Confidence 37899999999884 3 46666666999988 5678899998 9999999997666543 3599999
Q ss_pred eecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-CCcCCCCCCccEEEecccc
Q 018172 113 KWDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ-YTPITGAADHDIMLFTLSK 187 (360)
Q Consensus 113 ~~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~-~~~~~~~~~~~i~~~S~sK 187 (360)
.++.+ .+.++. ++++++|++++|+||||.+++ +.+.++|+++|+++|+|++|..+. ..++ ..+.++++.|+||
T Consensus 136 ~v~~~d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~--~~g~div~~S~sK 213 (400)
T 3nmy_A 136 FVDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPL--SLGADLVVHSATK 213 (400)
T ss_dssp EECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGG--GGTCSEEEEETTT
T ss_pred EECCCCHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh--hcCCcEEEecCcc
Confidence 88764 333332 468999999999999999998 778889999999999999997421 1111 2467899999999
Q ss_pred ccCCCCceEEE--EeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 018172 188 CTGHAGSRIGW--ALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS 265 (360)
Q Consensus 188 ~~~~~G~r~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (360)
.++.+|.++|+ +++.++++.+.+.......+.+.++..+.++...++ .++...++..++.+.+.+.|+++
T Consensus 214 ~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~--------~l~~r~~~~~~~a~~l~~~L~~~ 285 (400)
T 3nmy_A 214 YLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLK--------TLPLRMRAHCENALALAQWLETH 285 (400)
T ss_dssp TTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHT--------THHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHh--------HHHHHHHHHHHHHHHHHHHHHcC
Confidence 99878777755 555588999999887776677777777766666554 23444556677788888889888
Q ss_pred CCcccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHh---hCeeeeCCCCC------------------
Q 018172 266 GVFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRA---ERIMARGGRRF------------------ 319 (360)
Q Consensus 266 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~---~gI~~~pg~~f------------------ 319 (360)
+.+....+++.. +........+.+.++++.+++. +...+.+.+ .++.+..|..+
T Consensus 286 p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~ 365 (400)
T 3nmy_A 286 PAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVAR 365 (400)
T ss_dssp TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHH
T ss_pred CCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCCCCcceeeCccccccccCCHHH
Confidence 755443222210 0111111245567889998764 333333333 34444444322
Q ss_pred ----CCCCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 320 ----GADAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 320 ----~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
+..++.+|+|++.+ +.+.+++.|++.+.
T Consensus 366 ~~~~gi~~~liRlsvGle--~~~dli~dl~~al~ 397 (400)
T 3nmy_A 366 REQLGISDALVRLSVGIE--DLGDLRGDLERALV 397 (400)
T ss_dssp HHHHTCCTTEEEEECCSS--CHHHHHHHHHHHHC
T ss_pred HHhcCCCcCeEEEEeCcC--CHHHHHHHHHHHHh
Confidence 22467899999762 23344555666554
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-24 Score=201.10 Aligned_cols=286 Identities=11% Similarity=0.007 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC--CCCCCCceEEEeCCCCCCcHHHHHH-hCC------
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS--PGGPEPISVVSAAPYYSQYPAETDY-LRS------ 109 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~--~gd~~~~~vl~~~p~~~~~~~~~~~-~g~------ 109 (360)
.+|++.++++++ ..++|++|+|+++++..++..+.. +++. |++.+|+|..+...+.. .|.
T Consensus 96 ~~l~~~la~~~~-------~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~----vi~~~~~yhg~~~~~~~~~g~~~~~~~ 164 (429)
T 3k28_A 96 NKLAKLVIERVP-------SIEIVRMVNSGTEATMSALRLARGYTGRNK----ILKFIGCYHGHGDSLLIKAGSGVATLG 164 (429)
T ss_dssp HHHHHHHHHHST-------TCSEEEEESSHHHHHHHHHHHHHHHHTCCE----EEEEETCCCCSCGGGCSSCCTTC----
T ss_pred HHHHHHHHHhCC-------CCCEEEEeCChHHHHHHHHHHHHHhhCCCE----EEEECCCcCCCcHHHHHhcCCcccccC
Confidence 566666666653 235899999999999999988754 4455 99999999866543322 221
Q ss_pred -------------eeeeecC-Ccccccc-----CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeeccc
Q 018172 110 -------------GLYKWDG-DANTFDK-----NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYY 165 (360)
Q Consensus 110 -------------~~~~~~~-~~~~~~~-----~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~ 165 (360)
+++.++. |.+.++. .+++++|+++.++|++|.+.+ +.+.++|+++|+++|+||+|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~ 244 (429)
T 3k28_A 165 LPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMT 244 (429)
T ss_dssp -CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTT
T ss_pred CCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 1222222 2222222 135566666666667777765 567789999999999999997
Q ss_pred CCCCCcCC---CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHH---hhccccCChHHHHHHHHHhcccCCC
Q 018172 166 WPQYTPIT---GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI---ELGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 166 ~~~~~~~~---~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
+. ..... ...+...-+.||||.++ .|+|+||+++ ++++++.+.... ...+++.|+++|.++.++++...
T Consensus 245 g~-~~g~~~~~~~~~~~~di~t~sK~~~-~G~~iG~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-- 319 (429)
T 3k28_A 245 GF-RVAYNCGQGYYGVTPDLTCLGKVIG-GGLPVGAYGG-KAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-- 319 (429)
T ss_dssp TT-TSSTTHHHHHHTCCCSEEEECGGGG-TTSCCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC--
T ss_pred cc-ccCcchHHHHhCCCCceehhhhhhc-CCCCeEEEEE-cHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH--
Confidence 53 11110 11122222457999998 6999999998 899988875432 23467889999999999888432
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhc----CCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCee
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIM 312 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~ 312 (360)
++.++.++++++++.+.|+++ +.+......|.+..+.. ......+|..+..++. ..+.+.|.++||.
T Consensus 320 -----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 393 (429)
T 3k28_A 320 -----PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFF-TDEPVINYDAAKSSNLQFFAAYYREMVEQGVF 393 (429)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEES-SSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEE
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEE-ecCCcccccccccccHHHHHHHHHHHHHCCeE
Confidence 456666666666666666554 33222222233222110 0011112222222332 5567778899999
Q ss_pred eeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 313 ARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 313 ~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
++|+. .+.+|+++..++|++++++++|++++.+.
T Consensus 394 v~~~~-----~~~~r~~~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 394 LPPSQ-----FEGLFLSTVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp CCSST-----TSCBCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred EecCC-----CCCEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 99863 45789988779999999999999998764
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=200.11 Aligned_cols=280 Identities=10% Similarity=-0.012 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC-------CCCCCCceEEEeCCCCCCcHHHHHHhCC--
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS-------PGGPEPISVVSAAPYYSQYPAETDYLRS-- 109 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~-------~gd~~~~~vl~~~p~~~~~~~~~~~~g~-- 109 (360)
.+|++.++++++. ..++|++|+|+++++..+++.+.+ +|+. .|++.+++|......+...+.
T Consensus 121 ~~L~e~la~~~~~------~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~---~ii~~~~~yhg~~~~~~~~~~~~ 191 (457)
T 3tfu_A 121 ARLAKLLVDITPA------GLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR---RLMTWRGGYHGDTFLAMSICDPH 191 (457)
T ss_dssp HHHHHHHHHHSST------TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC---EEEEETTCCCCSSHHHHTTSCCC
T ss_pred HHHHHHHHHhCCC------CcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCc---eEEEEcCCcCCccHHhhcccCCc
Confidence 6777888877643 335899999999999999998864 5553 399999999887655554421
Q ss_pred ------------eeeeecCC--------cccccc--C---CCeeEEEEcC-CCCCCcccch-----HHHHHHhhhcCcEE
Q 018172 110 ------------GLYKWDGD--------ANTFDK--N---NGAYIEVVNS-PNNPDGTIRE-----AVLAKVNRSAEGKL 158 (360)
Q Consensus 110 ------------~~~~~~~~--------~~~~~~--~---~~~~~i~~~~-p~NPtG~~~~-----~~~~~~~~~~~~~l 158 (360)
.+..++.+ .+.++. + +++++|++.. ++||+|.+++ +.+.++|+++|+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gill 271 (457)
T 3tfu_A 192 GGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLL 271 (457)
T ss_dssp ----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEE
T ss_pred ccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 22223321 122221 1 5678888888 8999998874 56778999999999
Q ss_pred EEeecccCCCCC-cCC--CCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHH-----HhhccccCChHHHHHH
Q 018172 159 IHDLAYYWPQYT-PIT--GAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRF-----IELGSIGVSKESQLRA 229 (360)
Q Consensus 159 i~D~ay~~~~~~-~~~--~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~ 229 (360)
|+||+|.+.... ... ...+...-+.||||.++ .| +|+||+++ ++++++.+... ....+++.|++++.++
T Consensus 272 I~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~-gG~~~lG~v~~-~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa 349 (457)
T 3tfu_A 272 IFDEIATGFGRTGALFAADHAGVSPDIMCVGKALT-GGYLSLAATLC-TADVAHTISAGAAGALMHGPTFMANPLACAVS 349 (457)
T ss_dssp EEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGG-TTSSCCEEEEE-EHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHH
T ss_pred EEEcCccCCccccchhHhHhcCCCceEEEEChhhh-CCCcceEEEEE-cHHHHHHhhccCCCceeEecCCCcCHHHHHHH
Confidence 999999853211 111 11111111338999887 56 79999999 89999988632 2335678899999999
Q ss_pred HHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHH
Q 018172 230 AKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLL 306 (360)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l 306 (360)
.++|+.+.+. ...++++++.+++.+.|+++....... ..++.++|+++.+++. ..+.+.|
T Consensus 350 ~aaL~~~~~~------~~~~~~~~~~~~l~~~L~~l~~~~~v~-----------~vr~~G~~~~i~l~~~~~~~~~~~~l 412 (457)
T 3tfu_A 350 VASVELLLGQ------DWRTRITELAAGLTAGLDTARALPAVT-----------DVRVCGAIGVIECDRPVDLAVATPAA 412 (457)
T ss_dssp HHHHHHHHTS------CHHHHHHHHHHHHHHHHGGGGGSTTEE-----------EEEECSSCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHhcCCCee-----------eeecCCeEEEEEECCcccHHHHHHHH
Confidence 9988755332 345556666677777776652111000 1123455777777543 6677788
Q ss_pred HhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHHhchh
Q 018172 307 RAERIMARGGRRFGADAKYARVSM--LSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 307 ~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
.++||.++|. .+++||++ ..++|++++++++|++++.+.+
T Consensus 413 ~~~Gv~v~~~------~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 413 LDRGVWLRPF------RNLVYAMPPYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp HHTTEECCCB------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred HHCCeEEEec------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 8889999983 35899985 3499999999999999997643
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-24 Score=203.73 Aligned_cols=263 Identities=12% Similarity=0.008 Sum_probs=167.9
Q ss_pred CcEEEcCChHHHHHHHHHhhcC----CC----CCCCceEEEeCCCCCCcHHHHHHhCCe-------------eeeecCCc
Q 018172 60 RHIVIGTGSTQLYQAALYALSS----PG----GPEPISVVSAAPYYSQYPAETDYLRSG-------------LYKWDGDA 118 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~----~g----d~~~~~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~ 118 (360)
++|++|+|+++++..++..+.. +| +. |++.+|+|..+...+..++.. +..++.+.
T Consensus 105 ~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~----vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (448)
T 3dod_A 105 TRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQK----FIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPY 180 (448)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCE----EEEEC-----------------------------CEEECCCC
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCE----EEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCc
Confidence 5899999999999999998865 45 55 999999998776554443321 12222211
Q ss_pred -----------------ccccc-----CCCeeEEEEcCCC-CCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCC
Q 018172 119 -----------------NTFDK-----NNGAYIEVVNSPN-NPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYT 170 (360)
Q Consensus 119 -----------------~~~~~-----~~~~~~i~~~~p~-NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~ 170 (360)
+.++. .+++++|++..++ |++|...+ +.+.++|+++|+++|+||+|.+....
T Consensus 181 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~ 260 (448)
T 3dod_A 181 VYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRT 260 (448)
T ss_dssp CTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred cccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcc
Confidence 11221 2356667776666 88887654 56778999999999999999843211
Q ss_pred -cC--CCCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHH-------HHhhccccCChHHHHHHHHHhcccCCC
Q 018172 171 -PI--TGAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTR-------FIELGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 171 -~~--~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
.. ....+...-+.+|||.++ .| +|+||+++ ++++++.+.+ .....+++.|++++.++.++++.+.+.
T Consensus 261 g~~~a~~~~~~~~di~t~sK~l~-~G~~~ig~v~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 338 (448)
T 3dod_A 261 GKMFACEHENVQPDLMAAGKGIT-GGYLPIAVTFA-TEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESE 338 (448)
T ss_dssp SSSSGGGGGTCCCSEEEECGGGG-TTSSCCEEEEE-EHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred cchhhhhhcCCCCCEEEeccccc-CCcCceEEEEE-CHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcc
Confidence 11 112222222457899998 69 59999998 8999998875 434467788999999999988754332
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch--------------HHHHHH
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED--------------EDCEKL 305 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 305 (360)
...++.++..+..++.+.+ +..++.+.... +.+.|+|+.+++. ..+.+.
T Consensus 339 --~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~--------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (448)
T 3dod_A 339 --NIVEQVAEKSKKLHFLLQD-LHALPHVGDIR--------------QLGFMCGAELVRSKETKEPYPADRRIGYKVSLK 401 (448)
T ss_dssp --THHHHHHHHHHHHHHHHHH-HTTSTTEEEEE--------------EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHHH-HhcCCCeEEEE--------------eeeEEEEEEEccCcccccccchhhHHHHHHHHH
Confidence 4555555555555555555 55554322221 2233555555431 456777
Q ss_pred HHhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHHhch
Q 018172 306 LRAERIMARGGRRFGADAKYARVSM--LSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 306 l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~~ 351 (360)
|.++||.++|+ .+++||++ ..++|++++++++|++++.+.
T Consensus 402 l~~~Gv~~~~~------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 443 (448)
T 3dod_A 402 MRELGMLTRPL------GDVIAFLPPLASTAEELSEMVAIMKQAIHEV 443 (448)
T ss_dssp HHHTTEECCEE------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCcEEecc------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78889999986 26999954 449999999999999999764
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=195.82 Aligned_cols=285 Identities=12% Similarity=0.054 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH--HHHHHhCC--eeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP--AETDYLRS--GLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~--~~~~~~g~--~~~~~ 114 (360)
.++|+.++++++. + +.|++|+|+|++++.++.. +++||+ |++++++|.... ..++..|. +++.+
T Consensus 38 ~~~~~~l~~~~~~------~-~~v~~~~sgt~a~~~~~~~-~~~gd~----vi~~~~~~~~~~~~~~~~~~g~~~~~~~~ 105 (379)
T 3ke3_A 38 NDLLSNLKTVYNA------E-AAVIIPGSGTYGMEAVARQ-LTIDED----CLIIRNGWFSYRWTQILEKGKFAKSSTVL 105 (379)
T ss_dssp HHHHHHHHHHHTC------S-EEEEEESCHHHHHHHHHHH-HCTTCE----EEEEECSHHHHHHHHHHHHHCCSSEEEEE
T ss_pred HHHHHHHHHHhCC------C-CEEEEcCChhHHHHHHHHh-CCCCCe----EEEEeCCchhHHHHHHHHHhCCCCceEEE
Confidence 6777777788774 3 5799999999999998765 468988 999999887653 34555564 66666
Q ss_pred cCCc---------------ccccc---CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCCCcC
Q 018172 115 DGDA---------------NTFDK---NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQYTPI 172 (360)
Q Consensus 115 ~~~~---------------~~~~~---~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~~~~ 172 (360)
+.+. +.+.. ++++++|++++++||||.+++ +.+.++|+++|+++|+|+++. +..+..
T Consensus 106 ~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~~~ 184 (379)
T 3ke3_A 106 TAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCVWLD 184 (379)
T ss_dssp ECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTCCCC
T ss_pred eccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCcccc
Confidence 5432 22211 237899999999999999988 356778888999999999987 433222
Q ss_pred CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHh------------------h----ccccCChHHHHHHH
Q 018172 173 TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIE------------------L----GSIGVSKESQLRAA 230 (360)
Q Consensus 173 ~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~------------------~----~~~~~~~~~~~~~~ 230 (360)
....+.++++.|++|.++ .+.++|++++ ++++++.+..... . ...+.|...+.++.
T Consensus 185 ~~~~~~d~~~~s~~K~l~-~~~g~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~ 262 (379)
T 3ke3_A 185 MKELGIDVLISAPQKGWS-STPCAGLVML-SAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFR 262 (379)
T ss_dssp HHHHTCSEEEECTTTTTC-SCCCEEEEEE-CHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHH
T ss_pred ccccCCCEEEecchhhcC-CCCceEEEEE-CHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHH
Confidence 233467899999999886 3345899998 7888887754110 0 11266777777777
Q ss_pred HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchH-HHHHHHHhh
Q 018172 231 KILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDE-DCEKLLRAE 309 (360)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 309 (360)
++++.+.+ ..+++.+++++++++++.+.|++++ +.+..+.+.. .+....+..++.+ ...+.|.++
T Consensus 263 aal~~~~~---~g~~~~~~~~~~l~~~l~~~l~~~g-~~~~~~~~~~----------~~~i~~~~~~~~~~~~~~~L~~~ 328 (379)
T 3ke3_A 263 DAILEAKE---IGFDILRDAQWELGNRVRKVLTDKG-IESVAAEGFE----------APGVVVSYTERDDMHKGSAFAEA 328 (379)
T ss_dssp HHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHTT-CCBSBCTTCB----------CSSEEEEECSCHHHHSSHHHHHT
T ss_pred HHHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHcC-CEecCCcccc----------CceEEEEccCCcchHHHHHHHHC
Confidence 77775431 3378889999999999999999884 4443332110 0111222333332 226778889
Q ss_pred CeeeeCCCCCCC----CCCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 310 RIMARGGRRFGA----DAKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 310 gI~~~pg~~f~~----~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
||.+.+|..+.. ..+.+|+|+.. +++++++++++|++++++..
T Consensus 329 Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 329 GLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp TCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999876532 26799999865 89999999999999987643
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-22 Score=189.26 Aligned_cols=277 Identities=14% Similarity=0.067 Sum_probs=187.7
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH-H----HHHhCCeeeeecCC
Q 018172 43 EAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA-E----TDYLRSGLYKWDGD 117 (360)
Q Consensus 43 ~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~-~----~~~~g~~~~~~~~~ 117 (360)
+.++++++. + ...++++|+++++..++..++++||+ |+++.|+|..+.. . ....+..++.++.+
T Consensus 98 ~~la~~~g~------~-~~~v~~~sGs~a~~~a~~~~~~~Gd~----Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 166 (447)
T 3h7f_A 98 DRAKALFGA------E-FANVQPHSGAQANAAVLHALMSPGER----LLGLDLANGGHLTHGMRLNFSGKLYENGFYGVD 166 (447)
T ss_dssp HHHHHHHTC------S-EEECCCSSHHHHHHHHHHHHCCTTCE----EEEECGGGTCCGGGTCTTSHHHHSSEEEEECCC
T ss_pred HHHHHHcCC------C-ceEEEeCCHHHHHHHHHHHhcCCCCE----EEecCcccccccchhhhhhhcCCeeEEEEcCcC
Confidence 667777774 2 23333777899999999999999998 9999999988321 1 22235566666654
Q ss_pred cccccc----------CCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccC-----CCCCcCCCCCCccEEE
Q 018172 118 ANTFDK----------NNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYW-----PQYTPITGAADHDIML 182 (360)
Q Consensus 118 ~~~~~~----------~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~-----~~~~~~~~~~~~~i~~ 182 (360)
.+.... ..++++|++++|+||++..+ +.+.++|+++|+++|+|++|.. +...... ...++++
T Consensus 167 ~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~~l-~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~--~~~di~~ 243 (447)
T 3h7f_A 167 PATHLIDMDAVRATALEFRPKVIIAGWSAYPRVLDF-AAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV--PHADVVS 243 (447)
T ss_dssp TTTCSCCHHHHHHHHHHHCCSEEEEECSSCCSCCCH-HHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST--TTCSEEE
T ss_pred cccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCccCH-HHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC--CCCcEEE
Confidence 332211 23688999999999998733 6777888889999999999752 1111111 2456899
Q ss_pred eccccccCCCCceEEEEeecCHHHHHHHHHHHhhcccc-CChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHH
Q 018172 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIG-VSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQV 261 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (360)
.|+||.++ |+|+||+++ ++++++.+.........+ .+...+.++..++..... ..+++.++++.++++++.+.
T Consensus 244 ~s~sK~l~--G~~gG~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~---~~~~~~~~~~~~~~~~l~~~ 317 (447)
T 3h7f_A 244 TTVHKTLG--GGRSGLIVG-KQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAAT---PEFADRQRRTLSGARIIADR 317 (447)
T ss_dssp EESSGGGC--CCSCEEEEE-CGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcCCC--CCCeEEEEE-CHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHHHH
Confidence 99999875 789999998 788888887765433333 333334555555543322 57788999999999999999
Q ss_pred HHhc----CCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeee----CCCCCCC-CCCeEEE
Q 018172 262 IRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMAR----GGRRFGA-DAKYARV 328 (360)
Q Consensus 262 l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~----pg~~f~~-~~~~~R~ 328 (360)
|.+. +++.+.... ..++++|+++.. ...+.++|+++||.++ |+..++. .++++|+
T Consensus 318 L~~~~~~~~g~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRi 385 (447)
T 3h7f_A 318 LMAPDVAKAGVSVVSGG------------TDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRI 385 (447)
T ss_dssp HTSHHHHHTTCEEGGGS------------CSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEE
T ss_pred HHhccccCCCeEEecCC------------CCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceec
Confidence 9876 233332110 223366776642 2778888888899998 6532222 3678999
Q ss_pred Eec------CChHHHHHHHHHHHHHHhch
Q 018172 329 SML------SREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 329 s~~------~~~e~~~~~~~~l~~~~~~~ 351 (360)
+.. .+++++++++++|.+++.+.
T Consensus 386 g~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 386 GTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp ECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred cCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 863 36899999999999998764
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=198.40 Aligned_cols=277 Identities=11% Similarity=0.009 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH-HHHHHHHhhcC--CCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeec
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQ-LYQAALYALSS--PGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWD 115 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~-~l~~~~~~l~~--~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~ 115 (360)
.++|+.+++++|. +.+ +++|+|+|+ ++..++..+.. +++. |+++.++|.++...++..|++++.++
T Consensus 136 ~~~~~~la~~~g~------~~~-~~~t~g~te~a~~~al~~~~~~~~~~~----vi~~~~~h~s~~~~~~~~G~~~~~v~ 204 (456)
T 2z67_A 136 NKILESFFKQLGL------NVH-AIATPISTGMSISLCLSAARKKYGSNV----VIYPYASHKSPIKAVSFVGMNMRLVE 204 (456)
T ss_dssp HHHHHHHHHHTTC------CCE-EEEESSCHHHHHHHHHHHHHHHHCCCE----EEEECCCCHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHcCC------CCC-EEEeCcHHHHHHHHHHHHHHHhcCCCE----EEEECCCcHHHHHHHHHcCCCceEEE
Confidence 4577778888875 444 999999994 55545555433 5565 89899999999999999999998876
Q ss_pred C---C------ccccc----c---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC--cC-CC-
Q 018172 116 G---D------ANTFD----K---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT--PI-TG- 174 (360)
Q Consensus 116 ~---~------~~~~~----~---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~--~~-~~- 174 (360)
. + .+.++ . .+++.+|++++||||||.+.+ +++.++|+++|+++++|++|+..... +. ..
T Consensus 205 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~ 284 (456)
T 2z67_A 205 TVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA 284 (456)
T ss_dssp CEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH
T ss_pred EeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHh
Confidence 5 2 22221 1 146778889999999999988 78888899899999999999854321 11 10
Q ss_pred -CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHH
Q 018172 175 -AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 175 -~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
..+.++++.|++|.++ .+.++||++++++++++.+......+..+.+...+.++...+. ...+++..+++.+
T Consensus 285 ~~~~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~------~~~~~~~~~~~~~ 357 (456)
T 2z67_A 285 FKYRVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG------SKNYLELVKNQKN 357 (456)
T ss_dssp HTSCCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred hCCCCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 1156789999999665 6688999999668888877433221111122333433333332 2677889999999
Q ss_pred HHHHHHHHHHhcC---CcccCCCCCcccccccccCCCCCCcccccC--Cch-HHHHHHHHhhCe---eee------CCCC
Q 018172 254 RWNMLRQVIRQSG---VFGLPEYPLEYCNFTGKFTNSHPGFAWLES--KED-EDCEKLLRAERI---MAR------GGRR 318 (360)
Q Consensus 254 ~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~~~gI---~~~------pg~~ 318 (360)
+++++.+.|++++ +..+..+. +++++++ ++. ..+.+.|.++|| -+. +|..
T Consensus 358 ~~~~l~~~L~~~~~~~g~~v~~~~---------------~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~ 422 (456)
T 2z67_A 358 SKKLLDELLNDLSKKTGGKFLDVE---------------SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCY 422 (456)
T ss_dssp HHHHHHHHHHHHHHHSSCCBCCCC---------------CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTC
T ss_pred HHHHHHHHHHhcccccCCEecCCC---------------CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCcccccc
Confidence 9999999999884 44444333 2455555 443 567777888876 232 1333
Q ss_pred CCC-CCCeEEEEecC--ChHHHHHHHHHHHHHH
Q 018172 319 FGA-DAKYARVSMLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 319 f~~-~~~~~R~s~~~--~~e~~~~~~~~l~~~~ 348 (360)
+.. ..+++|+|++. ++|++++++++|++++
T Consensus 423 ~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 423 LGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp SSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 322 35799999874 8999999999998754
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=199.70 Aligned_cols=275 Identities=11% Similarity=0.027 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC--------CCCCCCceEEEeCCCCCCcHH-HHHHhC-
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS--------PGGPEPISVVSAAPYYSQYPA-ETDYLR- 108 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~--------~gd~~~~~vl~~~p~~~~~~~-~~~~~g- 108 (360)
.++++.++++++. ..++|++|+|+++++..++..+.. +++. |++.+|+|..... .+...|
T Consensus 96 ~~l~~~la~~~~~------~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~----vi~~~~~yhg~~~~~~~~~g~ 165 (449)
T 3a8u_X 96 FQLAEKITDLTPG------NLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTK----MIGRARGYHGVNIAGTSLGGV 165 (449)
T ss_dssp HHHHHHHHTTSST------TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCE----EEEETTCCCCSSHHHHHHCCC
T ss_pred HHHHHHHHHhCCC------CCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCE----EEEECCCcCCCChhhhhccCC
Confidence 5666666666542 346899999999999999988763 5666 9999999998754 454443
Q ss_pred -------------CeeeeecC---------C--------cccccc--C----CCeeEEEEcCCCCCCcccch-----HHH
Q 018172 109 -------------SGLYKWDG---------D--------ANTFDK--N----NGAYIEVVNSPNNPDGTIRE-----AVL 147 (360)
Q Consensus 109 -------------~~~~~~~~---------~--------~~~~~~--~----~~~~~i~~~~p~NPtG~~~~-----~~~ 147 (360)
...+.++. | .+.++. + +++++|+++..+||||.+.+ +.+
T Consensus 166 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l 245 (449)
T 3a8u_X 166 NGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRN 245 (449)
T ss_dssp HHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred hhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHH
Confidence 22333222 2 111111 1 34555555444578997554 567
Q ss_pred HHHhhhcCcEEEEeecccCCC-CCcC-C-C--CCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHH--------
Q 018172 148 AKVNRSAEGKLIHDLAYYWPQ-YTPI-T-G--AADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRF-------- 213 (360)
Q Consensus 148 ~~~~~~~~~~li~D~ay~~~~-~~~~-~-~--~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~-------- 213 (360)
.++|+++|+++|+||+|.+.. .... . . ....++ .|+||.++ .| +|+||+++ ++++++.+...
T Consensus 246 ~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di--~s~sK~l~-~G~~~~G~~~~-~~~~~~~l~~~~~~~~~~~ 321 (449)
T 3a8u_X 246 REICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDL--MCIAKQVT-NGAIPMGAVIA-STEIYQTFMNQPTPEYAVE 321 (449)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSE--EEECGGGG-TTSSCCEEEEE-EHHHHHHHHTCSSCTTSCS
T ss_pred HHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCE--EEEccccc-CCCCceEEEEE-CHHHHHHhhccCccccccc
Confidence 788999999999999996322 1111 0 1 111233 38899999 68 99999998 78888888753
Q ss_pred -HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcc
Q 018172 214 -IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFA 292 (360)
Q Consensus 214 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (360)
....+++.|++++.++.++++.+.+ +...++++++++++.+.|++++.+.... ..++.++|+
T Consensus 322 ~~~~~t~~~~~~~~aa~~aal~~~~~------~~~~~~~~~~~~~l~~~L~~l~~~~~~~-----------~~~~~g~~~ 384 (449)
T 3a8u_X 322 FPHGYTYSAHPVACAAGLAALCLLQK------ENLVQSVAEVAPHFEKALHGIKGAKNVI-----------DIRNFGLAG 384 (449)
T ss_dssp SCCCCTTTTCHHHHHHHHHHHHHHHH------TTHHHHHHHHHHHHHHHHHTTTTSTTEE-----------EEEEETTEE
T ss_pred ccccCCCcccHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHhcCCCeE-----------EEeeeEEEE
Confidence 1224567788999888888874321 2456777888888888887753221110 011344577
Q ss_pred cccCCch--------HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHHhc
Q 018172 293 WLESKED--------EDCEKLLRAERIMARGGRRFGADAKYARVSM--LSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 293 ~~~~~~~--------~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~ 350 (360)
|+.+++. ..+.+.|.++||.++|+ + +++||++ ..+++++++++++|++++++
T Consensus 385 ~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---g---~~iRis~~~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 385 AIQIAPRDGDAIVRPFEAGMALWKAGFYVRFG---G---DTLQFGPTFNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp EEEECCBTTBSSHHHHHHHHHHHHHTEECEEE---T---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCcccccccHHHHHHHHHHCCcEEecC---C---CEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 8777532 15777777889999986 1 6899995 45999999999999998864
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-22 Score=185.39 Aligned_cols=279 Identities=13% Similarity=0.107 Sum_probs=194.8
Q ss_pred HHHHHHH-HHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 39 PELAEAI-NNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 39 ~~lr~~l-a~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
.+||+++ +++++. . .++++++|+|++++.++..+ +++||+ |+++.|+|..+...+...|++++.+++
T Consensus 39 ~~l~~~~~a~~~g~------~-~~~v~~~sgt~al~~al~~l~~~~Gd~----Vi~~~~~~~~~~~~~~~~G~~~~~v~~ 107 (377)
T 3ju7_A 39 QRFEQTIMSGFFQN------R-GAVTTVANATLGLMAAIQLKKRKKGKY----ALMPSFTFPATPLAAIWCGLEPYFIDI 107 (377)
T ss_dssp HHHHHHHHHHTSTT------C-SEEEEESCHHHHHHHHHHHHSCTTCCE----EEEESSSCTHHHHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHhCC------C-CeEEEeCCHHHHHHHHHHHcCCCCcCE----EEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 8999999 999983 2 46899999999999999998 899998 999999999999999999999999987
Q ss_pred Ccccccc----------CCC--eeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcC--CCCCCccEE
Q 018172 117 DANTFDK----------NNG--AYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPI--TGAADHDIM 181 (360)
Q Consensus 117 ~~~~~~~----------~~~--~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~--~~~~~~~i~ 181 (360)
+.+.+.. +++ +++|+ |+||||...+ +.+.++|+ +|+++|+|++|+.+..... .+....++.
T Consensus 108 ~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~ 183 (377)
T 3ju7_A 108 SIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMI 183 (377)
T ss_dssp CTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEE
T ss_pred CCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEE
Confidence 6443222 234 88887 7889999988 78888999 9999999999985432111 111113455
Q ss_pred Eecc--ccccCCCCceEEEEeecCHHHHHHHHHHHhhc------------cccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 182 LFTL--SKCTGHAGSRIGWALVKDTEVARKMTRFIELG------------SIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 182 ~~S~--sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
+.|| +|.++ +| +.|++++.++++.+.++..+..+ ....+.+.+..+...+ +.++..
T Consensus 184 ~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l--------~~l~~~ 253 (377)
T 3ju7_A 184 IYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATM--------KKWDDK 253 (377)
T ss_dssp EEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHH--------HTHHHH
T ss_pred EEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHH--------HHHHHH
Confidence 6665 69998 45 67888887899999988876532 1223334333332322 445566
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccC-CCCCcccccccccCCCCCCcccccCCc---hHHHHHHHHhhCeeeeCCCC--CCC
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLP-EYPLEYCNFTGKFTNSHPGFAWLESKE---DEDCEKLLRAERIMARGGRR--FGA 321 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gI~~~pg~~--f~~ 321 (360)
.++.+++.+++.+.|++++++... .+..... ....|+.+.+++ .+.+.+.|+++||.++.+.. ...
T Consensus 254 ~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~ 325 (377)
T 3ju7_A 254 LKERTRISEWYKQLLQSNGLMKKGWQLQKTEA--------VIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQ 325 (377)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSC--------BCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGG
T ss_pred HHHHHHHHHHHHHHhcCCCCccccccCCCCCc--------ceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCcccc
Confidence 667777778888888888654221 1211110 111133455554 48899999999999987652 100
Q ss_pred ------------------CCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 322 ------------------DAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 322 ------------------~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
..+.+|+++.. ++|++++.++.|++++.+
T Consensus 326 ~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 326 QVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp SGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred chhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 02359999866 899999999999988765
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=196.83 Aligned_cols=270 Identities=12% Similarity=0.034 Sum_probs=187.3
Q ss_pred EcCChHHHHHHHHHhhcCC--------CCCC-CceEEEeCCCCCCcHHHHHHhCCeeeeecCCcccccc---------CC
Q 018172 64 IGTGSTQLYQAALYALSSP--------GGPE-PISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFDK---------NN 125 (360)
Q Consensus 64 ~t~G~t~~l~~~~~~l~~~--------gd~~-~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------~~ 125 (360)
+|+|+++++.+++.++..+ |+.. ...|+++.++|..+...++..|++++.++.+.+.+.. ++
T Consensus 122 ~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~ 201 (502)
T 3hbx_A 122 GTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDE 201 (502)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCT
T ss_pred ecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhh
Confidence 5899999999988887554 6511 1139999999999999999999999999876542221 46
Q ss_pred CeeEEEEcCCCCCCcccch-HHHHHHhhhc------CcEEEEeecccCC-------CCCcCCCCCCccEEEeccccccCC
Q 018172 126 GAYIEVVNSPNNPDGTIRE-AVLAKVNRSA------EGKLIHDLAYYWP-------QYTPITGAADHDIMLFTLSKCTGH 191 (360)
Q Consensus 126 ~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~------~~~li~D~ay~~~-------~~~~~~~~~~~~i~~~S~sK~~~~ 191 (360)
++++|++++|+||||.+.+ +.+.++|+++ |+++++|++|++. .........+.+.+..|.+|.++
T Consensus 202 ~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~- 280 (502)
T 3hbx_A 202 NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGL- 280 (502)
T ss_dssp TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTC-
T ss_pred CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccC-
Confidence 8999999999999999988 7788888878 9999999999842 22222234466788899999664
Q ss_pred CCceEEEEeecCHHHHHHHHHHH-hhcc---------ccC---ChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 192 AGSRIGWALVKDTEVARKMTRFI-ELGS---------IGV---SKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 192 ~G~r~G~~~~~~~~~~~~l~~~~-~~~~---------~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
.+.++||++..+++.+....... .+.. .+. ....+.++...+. .+.+.+..++..++.+++
T Consensus 281 ~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg------~~g~~~~~~~~~~~a~~l 354 (502)
T 3hbx_A 281 VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG------HEGYRNVMENCRENMIVL 354 (502)
T ss_dssp CCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 66789988885555432211100 0000 111 1223333333222 155677888888889999
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-----HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEec
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-----EDCEKLLRAERIMARGGRRFGA--DAKYARVSML 331 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~ 331 (360)
.+.|++++++.+..+. ...+++.+++++. ..+.+.|.++||.+........ ...++|+++.
T Consensus 355 ~~~L~~~~~~~~~~~~------------~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~ 422 (502)
T 3hbx_A 355 REGLEKTERFNIVSKD------------EGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIR 422 (502)
T ss_dssp HHHHHTTTCEEECSCS------------SSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECC
T ss_pred HHHHHhCCCEEEEeCC------------CCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeC
Confidence 9999999877765441 1123555555431 4788999999999754322211 2458999996
Q ss_pred C--ChHHHHHHHHHHHHHHhchh
Q 018172 332 S--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 332 ~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
. ++|+++.+++.|+++++..+
T Consensus 423 ~~~t~edid~li~~L~~~l~~l~ 445 (502)
T 3hbx_A 423 EDFSRTLAERLVIDIEKVMRELD 445 (502)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 5 89999999999999987654
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.90 E-value=9e-23 Score=193.80 Aligned_cols=291 Identities=11% Similarity=-0.019 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc--CCCCCCCceEEEeCCCCCCcHHHHH-HhC-------
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS--SPGGPEPISVVSAAPYYSQYPAETD-YLR------- 108 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~--~~gd~~~~~vl~~~p~~~~~~~~~~-~~g------- 108 (360)
.+|++.++++++ ..++|++|+|+++++..++..+. ..++. |++.+++|......+. ..+
T Consensus 96 ~~la~~l~~~~~-------~~~~v~~~~sGsea~~~al~~a~~~~~~~~----ii~~~~~yhg~~~~~~~~~~~~~~~~~ 164 (429)
T 4e77_A 96 VKMAQLVTDLVP-------TMDMVRMVNSGTEATMSAIRLARGYTGRDK----IIKFEGCYHGHADCLLVKAGSGALTLG 164 (429)
T ss_dssp HHHHHHHHHHST-------TCSEEEEESSHHHHHHHHHHHHHHHHCCCE----EEEETTCCCC-----------------
T ss_pred HHHHHHHHhhCC-------CCCEEEEeCcHHHHHHHHHHHHHHhhCCCE----EEEEcCccCCCChhhhhhcCCcccccC
Confidence 556666666553 24589999999999999988653 23444 8998899887754211 111
Q ss_pred ------------CeeeeecC-Ccccccc----C-CCeeEEEEcCCCCC-Ccccch-----HHHHHHhhhcCcEEEEeecc
Q 018172 109 ------------SGLYKWDG-DANTFDK----N-NGAYIEVVNSPNNP-DGTIRE-----AVLAKVNRSAEGKLIHDLAY 164 (360)
Q Consensus 109 ------------~~~~~~~~-~~~~~~~----~-~~~~~i~~~~p~NP-tG~~~~-----~~~~~~~~~~~~~li~D~ay 164 (360)
..+..++. |.+.++. . +++++| +.+|+|| +|.+.+ +.+.++|+++|+++|+||+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~v-i~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~ 243 (429)
T 4e77_A 165 QPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACI-IVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVM 243 (429)
T ss_dssp -CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEE-EECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETT
T ss_pred CCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEE-EECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 11222222 2222221 1 344444 4566655 566554 56788999999999999999
Q ss_pred cCCCCCcCC--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHH---HhhccccCChHHHHHHHHHhcccCCC
Q 018172 165 YWPQYTPIT--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRF---IELGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 165 ~~~~~~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
.+....... ...+...-+.|+||.++ +|+|+||+++ ++++++.+... ....+++.|++++.++.++++.+.+.
T Consensus 244 ~g~r~g~~~~~~~~~~~pdi~t~sK~~~-~G~~~G~~~~-~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 321 (429)
T 4e77_A 244 TGFRVALAGAQDYYHVIPDLTCLGKIIG-GGMPVGAFGG-RREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQV 321 (429)
T ss_dssp TBTTTBTTCHHHHTTCCCSEEEEEGGGG-TTSCCEEEEE-CHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTST
T ss_pred cCcccCcchHHHhcCCCCCeeeeccccc-CCCCeEEEEE-CHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 843111110 11111112459999999 8999999998 89998887653 12356688999999999988866442
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCC
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGG 316 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg 316 (360)
..+++.++.....++.+.+.+..++........|.+..+.-.......+|..+..++. ..+.+.|.++||.++|+
T Consensus 322 --~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~ 399 (429)
T 4e77_A 322 --GVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPS 399 (429)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSS
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeec
Confidence 5555555555555555555555554322221112211110000000111222222222 56777788899999986
Q ss_pred CCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 317 RRFGADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 317 ~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
. ...+|+++..++|++++++++|++++.+
T Consensus 400 ~-----~~~~~~~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 400 A-----FEAGFMSLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp T-----TSCEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred C-----CCCEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 4 2356777766999999999999999864
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-23 Score=194.34 Aligned_cols=287 Identities=16% Similarity=0.108 Sum_probs=189.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH----HHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET----DYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~~~~ 113 (360)
..++|++++++++. ++.+++++ +++++..++..++++||+ |+++.++|..+...+ +..|++++.
T Consensus 60 ~~~l~~~la~~~g~-------~~~v~~~s-Gt~A~~~~l~~~~~~gd~----vi~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (421)
T 2ctz_A 60 VDVLEKRLAALEGG-------KAALATAS-GHAAQFLALTTLAQAGDN----IVSTPNLYGGTFNQFKVTLKRLGIEVRF 127 (421)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEESS-HHHHHHHHHHHHCCTTCE----EEECSCCCHHHHHHHHTHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCC-------CceEEecC-HHHHHHHHHHHHhCCCCE----EEEeCCCchHHHHHHHHHHHHcCCEEEE
Confidence 38999999999985 34555555 599999999999999998 999999999887765 678999998
Q ss_pred e-cCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecc-cCCCC-CcCCCCCCccEEEeccc
Q 018172 114 W-DGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAY-YWPQY-TPITGAADHDIMLFTLS 186 (360)
Q Consensus 114 ~-~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay-~~~~~-~~~~~~~~~~i~~~S~s 186 (360)
+ +.+ .+.+.. ++++++|++++|+||||.+.+ +.+.++|+++|+++|+|++| ..+.. .++ ..+.+++++|+|
T Consensus 128 ~~~~~d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~--~~~~Di~~~s~~ 205 (421)
T 2ctz_A 128 TSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPL--AWGAALVTHSLT 205 (421)
T ss_dssp CCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGG--GGTCSEEEEETT
T ss_pred ECCCCCHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccCCcc--ccCCeEEEECCc
Confidence 8 764 334432 468999999999999999998 77888899999999999999 64321 122 345789999999
Q ss_pred cccCCCCceEEEEeecC--HHH----HHHHHH----------------------H----HhhccccCChHHHHHHHHHhc
Q 018172 187 KCTGHAGSRIGWALVKD--TEV----ARKMTR----------------------F----IELGSIGVSKESQLRAAKILG 234 (360)
Q Consensus 187 K~~~~~G~r~G~~~~~~--~~~----~~~l~~----------------------~----~~~~~~~~~~~~~~~~~~~l~ 234 (360)
|.++.+|.|+|++++.+ .++ .+.+.. . ....+...++....++...++
T Consensus 206 K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~ 285 (421)
T 2ctz_A 206 KWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGME 285 (421)
T ss_dssp TTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHT
T ss_pred ccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcc
Confidence 99998999999888842 111 111210 0 011122444454444444443
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcc----cccccccC-CCCCCcccccCCch-HHHHHHHHh
Q 018172 235 IVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEY----CNFTGKFT-NSHPGFAWLESKED-EDCEKLLRA 308 (360)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~ 308 (360)
. +....++..++.+++.+.|.+++++....+++.. +....... .+.+..+.+.+++. +.....+.+
T Consensus 286 -------~-l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~ 357 (421)
T 2ctz_A 286 -------T-LSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISR 357 (421)
T ss_dssp -------T-HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHT
T ss_pred -------h-HHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHh
Confidence 2 3334445557888999999998776654222110 00000000 24455677777653 444444444
Q ss_pred ---hCeeeeCCCCC----------------------CCCCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 309 ---ERIMARGGRRF----------------------GADAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 309 ---~gI~~~pg~~f----------------------~~~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
.++.+..|... |..++.+|+|++. |+++.+++.|.+.+
T Consensus 358 l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~--e~~~~li~~l~~al 420 (421)
T 2ctz_A 358 LKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL--EHVEDLKAELKEAL 420 (421)
T ss_dssp CSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHT
T ss_pred CCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 34455544211 2235799999854 46778888887765
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.5e-23 Score=194.19 Aligned_cols=277 Identities=13% Similarity=0.057 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc--CCCCCCCceEEEeCCCCCCcHHHHHHh-CCe-----
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS--SPGGPEPISVVSAAPYYSQYPAETDYL-RSG----- 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~--~~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~----- 110 (360)
.+|++.++++++ ..++|++|+|+++++..++.... ..++. |++.+|+|..+...+... |..
T Consensus 95 ~~la~~l~~~~~-------~~~~v~~~~ggsea~~~al~~a~~~~~~~~----vi~~~~~yhg~~~~~~~~~~~~~~~~~ 163 (427)
T 3fq8_A 95 NVLAEMVNDAVP-------SIEMVRFVNSGTEACMAVLRIMRAYTGRDK----IIKFEGCYHGHADMFLVKAGSGVATLG 163 (427)
T ss_dssp HHHHHHHHHHST-------TCSEEEEESSHHHHHHHHHHHHHHHHCCCE----EEEEETCCCCSCGGGCSSCCTHHHHHT
T ss_pred HHHHHHHHHhCC-------CCCEEEEeCCHHHHHHHHHHHHHHhhCCCE----EEEECCCcCCCCHHHHHhcCCcccccC
Confidence 445555555443 24589999999999999985442 22344 999889998755433222 111
Q ss_pred --------------eeeecC-Ccccccc-----CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeeccc
Q 018172 111 --------------LYKWDG-DANTFDK-----NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYY 165 (360)
Q Consensus 111 --------------~~~~~~-~~~~~~~-----~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~ 165 (360)
+..++. |.+.++. ..++++|+++.++|++|.+.+ +.+.++|+++|+++|+||+|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~ 243 (427)
T 3fq8_A 164 LPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT 243 (427)
T ss_dssp CCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred CCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 222222 2233322 236778888878888998876 467789999999999999998
Q ss_pred CCCCCcC---CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHH---hhccccCChHHHHHHHHHhcccCCC
Q 018172 166 WPQYTPI---TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI---ELGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 166 ~~~~~~~---~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
+. .... ....+...-+.|+||.++ +|+|+||+++ ++++++.+.... ...+++.|++++.++.++++.+.+.
T Consensus 244 g~-~~g~~~~~~~~~~~~di~t~sK~~~-~G~~~G~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~ 320 (427)
T 3fq8_A 244 GF-RIAYGGVQEKFGVTPDLTTLGKIIG-GGLPVGAYGG-KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQP 320 (427)
T ss_dssp BT-TTBTTHHHHHTTCCCSEEEECGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTST
T ss_pred cc-ccCcchhhHhcCCCCChhhhhhhhh-CCcceEEEEE-cHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhc
Confidence 43 1111 011122222568899999 8999999998 899988886532 2345677999999999888765432
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-------------ch---HHHH
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-------------ED---EDCE 303 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~---~~~~ 303 (360)
...++.++..+..++.+.+.+..++...... +.++++|+.+. +. ..+.
T Consensus 321 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 384 (427)
T 3fq8_A 321 --GTYEYLDQITKRLSDGLLAIAQETGHAACGG--------------QVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFH 384 (427)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHTTCCCEEE--------------EETTEEEEESSSCCCCSHHHHTTSCHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE--------------EeeeEEEEEEecCccccccccccccHHHHHHHH
Confidence 4455555444444444544444443211111 12224444432 21 4577
Q ss_pred HHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 304 KLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 304 ~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
+.|.++||.++|+. ...+|+++..++|++++++++|++++.+
T Consensus 385 ~~l~~~Gi~v~~~~-----~~r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 385 RGMLEQGIYLAPSQ-----FEAGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp HHHHHTTEECCSST-----TSCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEecCC-----CCCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 78888999999864 2356666666999999999999998863
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=192.76 Aligned_cols=279 Identities=16% Similarity=0.118 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHh-hcCCCCCCCceEEEeCCCCCCcHHHH----HHhCCeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYA-LSSPGGPEPISVVSAAPYYSQYPAET----DYLRSGLYK 113 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~-l~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~~~~ 113 (360)
.++++.+++++|. +.+++++++|++.+...+... ..++||+ |+++.++|+.+...+ +..|++++.
T Consensus 111 ~~~~~~la~~~g~------~~~~i~~~~g~taa~ea~~~a~~~~~gd~----Viv~~~~h~s~~~~~~~~a~~~G~~v~~ 180 (438)
T 1wyu_A 111 FEYQTMIAELAGL------EIANASMYDGATALAEGVLLALRETGRMG----VLVSQGVHPEYRAVLRAYLEAVGAKLLT 180 (438)
T ss_dssp HHHHHHHHHHHTS------SEECSCBSSHHHHHHHHHHHHHHHHTCCE----EEEETTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCC------CccceEEeCcHHHHHHHHHHHHhcCCCCE----EEEcCccCHhHHHHHHHHHHHCCCEEEE
Confidence 6788888888885 445789999999443333332 2467887 999999999988665 447999998
Q ss_pred ecCCccccc---cCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeec-ccCCCCCcCCCCCCccEEEeccccc
Q 018172 114 WDGDANTFD---KNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLA-YYWPQYTPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~~~~~~~~---~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~a-y~~~~~~~~~~~~~~~i~~~S~sK~ 188 (360)
++.+...++ .++++++|++++| ||||.+.+ +.+.++|+++|+++++|.. .+.+.. ...+..+.+++++| +|.
T Consensus 181 v~~~~~~~d~~~i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~-~~~~~~g~D~~~~s-~kk 257 (438)
T 1wyu_A 181 LPLEGGRTPLPEVGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVL-KPPGAYGADIAVGD-GQS 257 (438)
T ss_dssp ECCBTTBCCCCCCCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTB-CCHHHHTCSEEEEE-CTT
T ss_pred EcCcCCccCHHHhCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCc-CCCccCCCCEEEEC-Ccc
Confidence 875221111 2568999999999 99999988 6788888889999996632 221111 11134456788888 665
Q ss_pred cC----CCCceEEEEeecCHHHHHHHHHH-------------------------H-hhccccC---ChHHHHHHHHHhcc
Q 018172 189 TG----HAGSRIGWALVKDTEVARKMTRF-------------------------I-ELGSIGV---SKESQLRAAKILGI 235 (360)
Q Consensus 189 ~~----~~G~r~G~~~~~~~~~~~~l~~~-------------------------~-~~~~~~~---~~~~~~~~~~~l~~ 235 (360)
|| +.|.++||+++ ++++++.+... + ...+.+. +......++..+..
T Consensus 258 ~~~~~~~~Gp~~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~ 336 (438)
T 1wyu_A 258 LGLPMGFGGPHFGFLAT-KKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAA 336 (438)
T ss_dssp TTCCCGGGCSCCEEEEE-CGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHH
T ss_pred cCCCccCCCCCeeEEEE-cHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHH
Confidence 54 45668999998 67666554210 0 0112222 22222222222332
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC-chHHHHHHHHhhCeee-
Q 018172 236 VSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK-EDEDCEKLLRAERIMA- 313 (360)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~- 313 (360)
+. +..++++.+++.++++++.+.|++++++.+..+.. .+. .+.++.+ +...+.+.|.++||.+
T Consensus 337 ~~---~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~L~~~gi~v~ 401 (438)
T 1wyu_A 337 LG---PEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP-FFN-----------EFALALPKDPEAVRRALAERGFHGA 401 (438)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS-BCS-----------EEEEECSSCHHHHHHHHHHTTCCCC
T ss_pred hC---HHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCC-eEE-----------EEEEeCCCCHHHHHHHHHHCCceec
Confidence 21 15578889999999999999999987666654321 110 1223333 3367777788889999
Q ss_pred -eCCCCCCCCCCeEEEEecC--ChHHHHHHHHHHHHHH
Q 018172 314 -RGGRRFGADAKYARVSMLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 314 -~pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~~ 348 (360)
.++..|+ ++++|+|+.. +++++++++++|++++
T Consensus 402 ~~~~~~~~--~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 402 TPVPREYG--ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp EECCTTSC--SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred cccccccC--CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 7777664 6799999974 8999999999998875
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-23 Score=197.59 Aligned_cols=275 Identities=14% Similarity=0.104 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC-------CCCCCCceEEEeCCCCCCcHHHHHHhCCe-
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS-------PGGPEPISVVSAAPYYSQYPAETDYLRSG- 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~-------~gd~~~~~vl~~~p~~~~~~~~~~~~g~~- 110 (360)
.+|++.++++++. ..++|++++|+++++..+++.+.+ ++.. +|++.+|+|..+...+...+..
T Consensus 102 ~~lae~l~~~~~~------~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~---~ii~~~~~yHg~t~~~~~~~~~~ 172 (472)
T 3hmu_A 102 IALAQKLAELAPG------DLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKT---VIISRKNAYHGSTVASSALGGMA 172 (472)
T ss_dssp HHHHHHHHHHSCT------TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC---EEEEETTCCCCSSHHHHHHSCCH
T ss_pred HHHHHHHHHhCCC------CCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCC---EEEEEcCcCCCccHHhhhccCCh
Confidence 4455555554431 235899999999999999998864 2322 3999999999988766655442
Q ss_pred -----------eeeecCC------------------cccccc------CCCeeEEEEcCCCCCCcccch-----HHHHHH
Q 018172 111 -----------LYKWDGD------------------ANTFDK------NNGAYIEVVNSPNNPDGTIRE-----AVLAKV 150 (360)
Q Consensus 111 -----------~~~~~~~------------------~~~~~~------~~~~~~i~~~~p~NPtG~~~~-----~~~~~~ 150 (360)
+..++.+ .+.++. .+++.+|++..++|++|.+.+ +.+.++
T Consensus 173 ~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l 252 (472)
T 3hmu_A 173 GMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRI 252 (472)
T ss_dssp HHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHH
T ss_pred hhccccCCCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHH
Confidence 2233321 111211 135666777777778888764 567889
Q ss_pred hhhcCcEEEEeecccCCCCCc-CC--C--CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHH--HHhhccccCCh
Q 018172 151 NRSAEGKLIHDLAYYWPQYTP-IT--G--AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTR--FIELGSIGVSK 223 (360)
Q Consensus 151 ~~~~~~~li~D~ay~~~~~~~-~~--~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~--~~~~~~~~~~~ 223 (360)
|+++|+++|+||+|.+..... .. . ....+ +.+|||.++..|+|+||+++ ++++++.+.. .....+++.|+
T Consensus 253 ~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pd--i~t~sK~l~gg~~plG~v~~-~~~i~~~~~~~~~~~~~t~~~np 329 (472)
T 3hmu_A 253 CDKYDILLIADEVICGFGRTGNWFGTQTMGIRPH--IMTIAKGLSSGYAPIGGSIV-CDEVAHVIGKDEFNHGYTYSGHP 329 (472)
T ss_dssp HHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCS--EEEECGGGTTTSSCCEEEEE-EHHHHHHHTTSCBCCCCTTTTCH
T ss_pred HHHcCCEEEEEccccCCcccCccchhHHhCCCCc--eeeechhhhcCCcceEEEEE-CHHHHHhcccCCccccCCCCCCH
Confidence 999999999999998532111 11 1 11122 33688999844499999999 8999998832 12334678899
Q ss_pred HHHHHHHHHhcccCCCchhHHHHHHHHHH-HHHHHHHHHHHhc---CCcccCCCCCcccccccccCCCCCCcccccCCc-
Q 018172 224 ESQLRAAKILGIVSDDYPNFFEYGRRLMS-ERWNMLRQVIRQS---GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE- 298 (360)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 298 (360)
++|.++.++|+.+.+ +...+.++ ++.+++.+.|+++ +.+.... +.++|+++.+..
T Consensus 330 ~a~aAa~aaL~~~~~------~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr--------------~~G~~~~i~~~~~ 389 (472)
T 3hmu_A 330 VAAAVALENLRILEE------ENILDHVRNVAAPYLKEKWEALTDHPLVGEAK--------------IVGMMASIALTPN 389 (472)
T ss_dssp HHHHHHHHHHHHHHH------TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEE--------------EETTEEEEEECSC
T ss_pred HHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE--------------ecCceEEEEEecC
Confidence 999999998875432 23444455 5556666666554 2222222 233344444421
Q ss_pred --------------hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEE--ecCChHHHHHHHHHHHHHHhch
Q 018172 299 --------------DEDCEKLLRAERIMARGGRRFGADAKYARVS--MLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 299 --------------~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s--~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
...+.+.|.++||.++|+. +++||+ +..++|++++++++|++++.+.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 390 KASRAKFASEPGTIGYICRERCFANNLIMRHVG------DRMIISPPLVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp GGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET------TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHCCcEEEecC------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2456777888999999852 699999 4559999999999999998653
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-22 Score=192.16 Aligned_cols=298 Identities=10% Similarity=0.009 Sum_probs=195.1
Q ss_pred HHHHHHH----HHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcC--------CC-----CCCCceEEEeCCCCCCcH
Q 018172 39 PELAEAI----NNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSS--------PG-----GPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 39 ~~lr~~l----a~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~--------~g-----d~~~~~vl~~~p~~~~~~ 101 (360)
.++++++ ++++|. +.. .+++++|+|+|+++..++..+.. +| + ..|+++.+.|.++.
T Consensus 131 ~~le~~~~~~la~~~g~---~~~-~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~---~~v~~s~~~h~s~~ 203 (504)
T 2okj_A 131 VLMEQITLKKMREIVGW---SSK-DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPK---LVLFTSEQSHYSIK 203 (504)
T ss_dssp HHHHHHHHHHHHHHHTC---CSS-SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCC---EEEEEETTSCTHHH
T ss_pred HHHHHHHHHHHHHHhCC---CCC-CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCC---eEEEECCcchHHHH
Confidence 4555555 455553 211 45899999999999999888753 45 4 13999999999999
Q ss_pred HHHHHhCC---eeeeecCCccc-ccc-------CC------CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeec
Q 018172 102 AETDYLRS---GLYKWDGDANT-FDK-------NN------GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 102 ~~~~~~g~---~~~~~~~~~~~-~~~-------~~------~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~a 163 (360)
..++.+|. +++.++.+.++ ++. ++ ++++|++++|+||||.+.+ +.+.++|+++|+++++|++
T Consensus 204 ~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a 283 (504)
T 2okj_A 204 KAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAA 283 (504)
T ss_dssp HHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEET
T ss_pred HHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehh
Confidence 99998877 88888875321 111 12 5899999999999999987 7888899999999999999
Q ss_pred ccCCCCC------cCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHH-hhc-cc----------------
Q 018172 164 YYWPQYT------PITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI-ELG-SI---------------- 219 (360)
Q Consensus 164 y~~~~~~------~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-~~~-~~---------------- 219 (360)
|+.+... .+.+....++++.|+||.++.| .++|+++++++++++...... .+. ..
T Consensus 284 ~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 362 (504)
T 2okj_A 284 WGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQ 362 (504)
T ss_dssp TGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSC
T ss_pred hhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCC
Confidence 9864321 1222235678899999988844 689999986555555422111 110 00
Q ss_pred ---cCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCC---CCCcccccccccCCCCC----
Q 018172 220 ---GVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPE---YPLEYCNFTGKFTNSHP---- 289 (360)
Q Consensus 220 ---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~---- 289 (360)
..+.+.+.++..++. ...+++..++..++++++.+.|++++++.+.. |....++|........+
T Consensus 363 ~~rr~~~l~~~a~l~~lg------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~ 436 (504)
T 2okj_A 363 CGRHVDIFKFWLMWKAKG------TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDS 436 (504)
T ss_dssp SSCBCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCC
T ss_pred CCCCccHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccc
Confidence 113455555544443 26688888899999999999999987777654 44343332100000000
Q ss_pred CcccccCCc-hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec---CChHHHHHHHHHHHHHHhc
Q 018172 290 GFAWLESKE-DEDCEKLLRAERIMARGGRRFGADAKYARVSML---SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 290 ~~~~~~~~~-~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~---~~~e~~~~~~~~l~~~~~~ 350 (360)
.-..-.... ...+.+.|.++|+.+..+..++...+++|+++. .+++++++++++|++++++
T Consensus 437 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 437 PQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 000000000 145667777888654433233322368999996 3899999999999998765
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=192.40 Aligned_cols=278 Identities=11% Similarity=-0.009 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHh---hcCCCCCCCceEEEeCCCCCCcHHHHHH---------
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYA---LSSPGGPEPISVVSAAPYYSQYPAETDY--------- 106 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~---l~~~gd~~~~~vl~~~p~~~~~~~~~~~--------- 106 (360)
.++++++++++.... + ..++|++|+|+++++..++.. +.++ +. |++.+|+|+.+...+..
T Consensus 96 ~~~~~~la~~l~~~~-~--~~~~v~~~~gg~eA~~~al~~ar~~~~~-~~----vi~~~~~yhg~~~~~~~~~~~~~~~~ 167 (453)
T 2cy8_A 96 HPLEVRWAERIVAAF-P--SIRKLRFTGSGTETTLLALRVARAFTGR-RM----ILRFEGHYHGWHDFSASGYNSHFDGQ 167 (453)
T ss_dssp CHHHHHHHHHHHHHC-T--TCSEEEEESCHHHHHHHHHHHHHHHHCC-CE----EEEECC--------------------
T ss_pred CHHHHHHHHHHHhhC-C--CCCEEEEeCCHHHHHHHHHHHHHHhhCC-CE----EEEEcCCcCCCchhhHhhcCCccCCC
Confidence 677888887764332 1 245899999999999999888 6654 44 88888999866543221
Q ss_pred --hCCe------eeeecC-Ccccccc--C---CCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC
Q 018172 107 --LRSG------LYKWDG-DANTFDK--N---NGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP 167 (360)
Q Consensus 107 --~g~~------~~~~~~-~~~~~~~--~---~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~ 167 (360)
.|.+ +..++. |.+.++. + +++++|+++..+||||.+++ +.+.++|+++|+++|+||+|.+.
T Consensus 168 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~ 247 (453)
T 2cy8_A 168 PAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF 247 (453)
T ss_dssp --------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred cCCCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc
Confidence 1332 333332 3333322 1 35666665555578998754 46678899999999999999843
Q ss_pred CCCcC--CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHH-----HHhhccccCChHHHHHHHHHhcc-cCCC
Q 018172 168 QYTPI--TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTR-----FIELGSIGVSKESQLRAAKILGI-VSDD 239 (360)
Q Consensus 168 ~~~~~--~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~l~~-~~~~ 239 (360)
..... ....+...-+.|+||.++ .|+|+||+++ ++++++.+.. .....+++.|++++.++.++++. + .
T Consensus 248 ~~g~~~~~~~~~~~~di~s~sK~l~-~G~~~G~v~~-~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~- 323 (453)
T 2cy8_A 248 RVGNHGMQALLDVQPDLTCLAKASA-GGLPGGILGG-REDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E- 323 (453)
T ss_dssp TTCTTHHHHHHTCCCSEEEEEGGGG-TTSSCEEEEE-CHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H-
T ss_pred ccCchhhhHHhCCCCcEEEEChhhh-CCcceEEEec-hHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h-
Confidence 11110 001111111348999999 6999999999 7888887754 12234667889999888888874 3 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhc----CCcccCCCCCcccccccccCCCCCCcccccCCc-----------------
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----------------- 298 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 298 (360)
++..++++++++++.+.|+++ +..... ++.+.|+|+.+++
T Consensus 324 -----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 384 (453)
T 2cy8_A 324 -----DDVCAKINDLGQFAREAMNHLFARKGLNWLA--------------YGRFSGFHLMPGLPPNTTDTGSITRAEVAR 384 (453)
T ss_dssp -----TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE--------------ECCTTEEEEEETSCTTCCCCHHHHTTCSCC
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEE--------------EEeeeEEEEEEecccccccccccccccccc
Confidence 234455666666666666554 321111 1334466776652
Q ss_pred -----hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhchhcc
Q 018172 299 -----DEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGSISN 354 (360)
Q Consensus 299 -----~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~~~ 354 (360)
...+.+.|.++||.+.|+ +.+|+++..+++++++++++|++++.+....
T Consensus 385 ~~~~~~~~l~~~l~~~Gv~v~~~-------~~~~l~~~~t~~~i~~~l~~l~~~l~~~~~~ 438 (453)
T 2cy8_A 385 PDVKMIAAMRMALILEGVDIGGR-------GSVFLSAQHEREHVEHLVTTFDRVLDRLADE 438 (453)
T ss_dssp CCHHHHHHHHHHHHHTTEECBTT-------TEEECCTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHCCeEEeCC-------CCEEeeccCCHHHHHHHHHHHHHHHHHHHhC
Confidence 145667777889999653 2478876669999999999999999775433
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-22 Score=190.91 Aligned_cols=268 Identities=11% Similarity=-0.008 Sum_probs=178.6
Q ss_pred CcEEEcCChHHHHHHHHHhhcCC----CCCCCceEEEeCCCCCCcHHHHHHhCCee-------------eeec--C----
Q 018172 60 RHIVIGTGSTQLYQAALYALSSP----GGPEPISVVSAAPYYSQYPAETDYLRSGL-------------YKWD--G---- 116 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~~----gd~~~~~vl~~~p~~~~~~~~~~~~g~~~-------------~~~~--~---- 116 (360)
++|++++|+++++..+++.+.+. |++.+.+|++.+|+|..+...+...+... ..++ .
T Consensus 115 ~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 194 (476)
T 3i5t_A 115 NRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA 194 (476)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGC
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCccccc
Confidence 48999999999999999988531 21111249999999998876665543321 1222 1
Q ss_pred -C----------cccccc------CCCeeEEEEcCCCCCCcccc-h----HHHHHHhhhcCcEEEEeecccCCCCC-cCC
Q 018172 117 -D----------ANTFDK------NNGAYIEVVNSPNNPDGTIR-E----AVLAKVNRSAEGKLIHDLAYYWPQYT-PIT 173 (360)
Q Consensus 117 -~----------~~~~~~------~~~~~~i~~~~p~NPtG~~~-~----~~~~~~~~~~~~~li~D~ay~~~~~~-~~~ 173 (360)
+ .+.++. .+++++|++..++|++|... + +.+.++|+++|+++|+||+|.+.... ...
T Consensus 195 ~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~ 274 (476)
T 3i5t_A 195 GNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWF 274 (476)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSC
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCce
Confidence 1 112211 14567888888888899754 3 56778999999999999999853111 110
Q ss_pred --C-CCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHH-------HhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 174 --G-AADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRF-------IELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 174 --~-~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
. ..+...-+.++||.++ .| +|+|++++ ++++++.+... ....+++.|++++.++.++|+.+.+
T Consensus 275 ~~~~~~~v~pdi~t~sK~l~-~G~~plg~v~~-~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~---- 348 (476)
T 3i5t_A 275 ASEKVFGVVPDIITFAKGVT-SGYVPLGGLAI-SEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMER---- 348 (476)
T ss_dssp HHHHTTCCCCSEEEECGGGG-TTSSCCEEEEE-CHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHH----
T ss_pred eeecccCCCcchhhhhhhhc-CCCcCeEEEEE-CHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHh----
Confidence 1 1111111347889999 69 99999999 89999988753 2335778999999999998875432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--------------hHHHHHHHHh
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--------------DEDCEKLLRA 308 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~ 308 (360)
++..+.++++.+++.+.|+.+....... .+++.+.|+++.+.+ ...+.+.|.+
T Consensus 349 --~~~~~~~~~~~~~l~~~L~~l~~~~~v~-----------~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 415 (476)
T 3i5t_A 349 --EGIVDQAREMADYFAAALASLRDLPGVA-----------ETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFE 415 (476)
T ss_dssp --TTHHHHHHHHHHHHHHHHHTTTTSTTEE-----------EEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCCeE-----------EEEecCceeEEEEecCccccccccchhHHHHHHHHHHHH
Confidence 2455666667777777776542111100 112333455555432 2456677788
Q ss_pred hCeeeeCCCCCCCCCCeEEEE--ecCChHHHHHHHHHHHHHHhchh
Q 018172 309 ERIMARGGRRFGADAKYARVS--MLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 309 ~gI~~~pg~~f~~~~~~~R~s--~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
+||.++|. + +++||+ +..++|++++++++|++++.+..
T Consensus 416 ~Gv~v~~~---g---~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~ 455 (476)
T 3i5t_A 416 LGLIVRPL---G---DLCVISPPLIISRAQIDEMVAIMRQAITEVS 455 (476)
T ss_dssp TTEECEEE---T---TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEec---C---CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999983 2 699999 55599999999999999997643
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=194.54 Aligned_cols=285 Identities=14% Similarity=0.091 Sum_probs=177.0
Q ss_pred cccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCC-----C----CCCCceEEEeCCC
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSP-----G----GPEPISVVSAAPY 96 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~-----g----d~~~~~vl~~~p~ 96 (360)
.|++..+. .+||++++++++. +++++|+|+++++..++..+.++ | |+ |+++.+.
T Consensus 69 ~y~~~~~~-----~~l~~~la~~~~~--------~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~----Ii~~~~h 131 (467)
T 2oqx_A 69 AYSGSRSY-----YALAESVKNIFGY--------QYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKM----VAFSNYF 131 (467)
T ss_dssp CSSSCHHH-----HHHHHHHHHHHCC--------SEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTC----EEEESSC
T ss_pred eeccCchh-----HHHHHHHHHHhCc--------CcEEEcCCcHHHHHHHHHHHhccccccCCCCccce----EEecccc
Confidence 46666665 8999999999974 47999999999999999999887 8 87 8887433
Q ss_pred CCCcHHHHHHhCCeeeee------cC----------Ccccccc--C----CCeeEEEEcCCCCCC-cccch----HHHHH
Q 018172 97 YSQYPAETDYLRSGLYKW------DG----------DANTFDK--N----NGAYIEVVNSPNNPD-GTIRE----AVLAK 149 (360)
Q Consensus 97 ~~~~~~~~~~~g~~~~~~------~~----------~~~~~~~--~----~~~~~i~~~~p~NPt-G~~~~----~~~~~ 149 (360)
|..+.......|..+... +. |.+.++. + +++++|++++||||| |.+++ +.+.+
T Consensus 132 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~ 211 (467)
T 2oqx_A 132 FDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYS 211 (467)
T ss_dssp CHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHH
T ss_pred cccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHH
Confidence 343444555556665432 11 1111211 1 378999999999998 88876 36778
Q ss_pred HhhhcCcEEEEeecccC------------CCCCcCCCC-----CCccEEEeccccccCCC-CceEEEEeecCH---HHHH
Q 018172 150 VNRSAEGKLIHDLAYYW------------PQYTPITGA-----ADHDIMLFTLSKCTGHA-GSRIGWALVKDT---EVAR 208 (360)
Q Consensus 150 ~~~~~~~~li~D~ay~~------------~~~~~~~~~-----~~~~i~~~S~sK~~~~~-G~r~G~~~~~~~---~~~~ 208 (360)
+|+++|+++|+|+++.. ....+.... ...++++.|+||.++++ | ||++++++ +.++
T Consensus 212 la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G---g~~~~~~~~~~~~~~ 288 (467)
T 2oqx_A 212 IAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG---GLLCMKDDSFFDVYT 288 (467)
T ss_dssp HHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC---EEEEECSGGGHHHHH
T ss_pred HHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc---eEEEecChhHHHHHH
Confidence 89999999999954321 000111000 12345689999999877 4 88887334 3444
Q ss_pred HHHHHHhhc-c---cc-CChHHHHHHHHHhcccCCCchhHH-HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCccccccc
Q 018172 209 KMTRFIELG-S---IG-VSKESQLRAAKILGIVSDDYPNFF-EYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTG 282 (360)
Q Consensus 209 ~l~~~~~~~-~---~~-~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 282 (360)
.+....... + .+ .+.....++...+. .++ ++..+...++++++.+.|+++ ++.+. +.+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~-------~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~----- 354 (467)
T 2oqx_A 289 ECRTLCVVQEGFPTYGGLEGGAMERLAVGLY-------DGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGH----- 354 (467)
T ss_dssp HHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH-------HTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSS-----
T ss_pred HHHHhhhccCCcccccchhhhHHHHHHHhhH-------hhhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCCce-----
Confidence 444332111 1 11 12222222222222 111 123344567788888999887 45444 44443
Q ss_pred ccCCCCCCcccccCC------c-----hHHHHHHH-HhhCeeeeCCCCC--CC----------CCCeEEEEec---CChH
Q 018172 283 KFTNSHPGFAWLESK------E-----DEDCEKLL-RAERIMARGGRRF--GA----------DAKYARVSML---SREE 335 (360)
Q Consensus 283 ~~~~~~~~~~~~~~~------~-----~~~~~~~l-~~~gI~~~pg~~f--~~----------~~~~~R~s~~---~~~e 335 (360)
++|++++ + ...+.+.| .++||.+.|+..| +. ..+++||++. .+++
T Consensus 355 --------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e 426 (467)
T 2oqx_A 355 --------AAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQT 426 (467)
T ss_dssp --------CEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHH
T ss_pred --------EEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHH
Confidence 4455442 1 12235555 8999999995532 21 1379999997 6899
Q ss_pred HHHHHHHHHHHHHhchh
Q 018172 336 IFNIFLERLSAIQGGSI 352 (360)
Q Consensus 336 ~~~~~~~~l~~~~~~~~ 352 (360)
++++++++|++++.+..
T Consensus 427 ~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 427 HMDFIIEAFKHVKENAA 443 (467)
T ss_dssp HHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999999997654
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=188.13 Aligned_cols=294 Identities=12% Similarity=0.036 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHh-hcCCCCC------CCCcEEEcCChHHHHHHHHHhhcCC---------CCC------CCceEEEeCCC
Q 018172 39 PELAEAINNLHH-VVDNAVS------DGRHIVIGTGSTQLYQAALYALSSP---------GGP------EPISVVSAAPY 96 (360)
Q Consensus 39 ~~lr~~la~~~~-~~~~~~~------~~~~i~~t~G~t~~l~~~~~~l~~~---------gd~------~~~~vl~~~p~ 96 (360)
.++++++++++. ..|.+.. ...++++|+|+|+++..++.++.+. ||. ....|+++.++
T Consensus 112 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~ 191 (486)
T 1js3_A 112 TELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA 191 (486)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC
T ss_pred HHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCC
Confidence 778878776643 3343321 1236899999999998888776421 320 01237889999
Q ss_pred CCCcHHHHHHhCCeeeeecCCccc-ccc-------CCCe------eEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEe
Q 018172 97 YSQYPAETDYLRSGLYKWDGDANT-FDK-------NNGA------YIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHD 161 (360)
Q Consensus 97 ~~~~~~~~~~~g~~~~~~~~~~~~-~~~-------~~~~------~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D 161 (360)
|.++...++.+|++++.++.|.++ ++. ++++ .+|++++|+||||.+-+ +.+.++|+++|+++++|
T Consensus 192 h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD 271 (486)
T 1js3_A 192 HSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVD 271 (486)
T ss_dssp CHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEe
Confidence 999999999999999999876322 221 1233 48999999999999877 77888999999999999
Q ss_pred ecccCCCC-----CcC-CCCCCccEEEeccccccCCCCceEEEEeecCHHH-HHHHHH----HHhhc-------------
Q 018172 162 LAYYWPQY-----TPI-TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEV-ARKMTR----FIELG------------- 217 (360)
Q Consensus 162 ~ay~~~~~-----~~~-~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~-~~~l~~----~~~~~------------- 217 (360)
++|+...+ ... .+..+.+.++.|+||.++.| +++|+++++++.. .+.+.. .....
T Consensus 272 ~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 350 (486)
T 1js3_A 272 AAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQ 350 (486)
T ss_dssp CTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC------------CCSCCCGGGSS
T ss_pred hhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccC
Confidence 99985322 111 12234567788999988854 8999999976664 333311 10000
Q ss_pred ---cccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCC-CCCcccccccccCCCCCCccc
Q 018172 218 ---SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPE-YPLEYCNFTGKFTNSHPGFAW 293 (360)
Q Consensus 218 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 293 (360)
+.....+.+.++...+. ...+++..+++.++++++.+.|++++++.+.. |... ++.
T Consensus 351 ~~~~rr~~~~~~~~al~~~g------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~--------------~v~ 410 (486)
T 1js3_A 351 LPLGRRFRSLKMWFVFRMYG------VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLG--------------LVC 410 (486)
T ss_dssp SCSCCCCTHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSS--------------EEE
T ss_pred CCCCCchhHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCcee--------------EEE
Confidence 00122344444444332 26788888999999999999999987777653 3222 233
Q ss_pred ccCCc----hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC---ChHHHHHHHHHHHHHHhchhcc
Q 018172 294 LESKE----DEDCEKLLRAERIMARGGRRFGADAKYARVSMLS---REEIFNIFLERLSAIQGGSISN 354 (360)
Q Consensus 294 ~~~~~----~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~~~~ 354 (360)
+.++. ...+.+.|.++|+.+.++..++ ..+++|+++.. +++++++++++|++++++..+.
T Consensus 411 f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~~ 477 (486)
T 1js3_A 411 FRLKGSDGLNEALLERINSARKIHLVPCRLR-GQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLAA 477 (486)
T ss_dssp EEESSCHHHHHHHHHHHHHHTSCBCEEEEET-TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred EEecChHHHHHHHHHHHHhcCCEEEEEEEEC-CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 33332 2567777777886654433344 35699999843 7899999999999998765433
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-22 Score=190.42 Aligned_cols=274 Identities=15% Similarity=0.047 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHh---hcCCCCCCCceEEEeCCCCCCcHHHHH----------
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYA---LSSPGGPEPISVVSAAPYYSQYPAETD---------- 105 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~---l~~~gd~~~~~vl~~~p~~~~~~~~~~---------- 105 (360)
.++++.++++++ ..++|++|+|+++++..++.. +.+ ++. |++.+|+|..+...+.
T Consensus 99 ~~l~~~la~~~~-------~~~~v~~~~sgseA~~~al~~ar~~~~-~~~----vi~~~~~yhg~~~~~~~~~~~~~~~~ 166 (434)
T 2epj_A 99 VLLAEKILGYVK-------RGGMIRFVNSGTEATMTAIRLARGYTG-RDL----ILKFDGCYHGSHDAVLVAAGSAAAHY 166 (434)
T ss_dssp HHHHHHHHHHHC-------TTCEEEEESSHHHHHHHHHHHHHHHHC-CCE----EEEEETCCCCSSGGGSEECC------
T ss_pred HHHHHHHHHhCC-------CCCEEEEeCCHHHHHHHHHHHHHHhhC-CCe----EEEEcCCcCCCCHHHHHhcCCCcccc
Confidence 555566665552 235899999999999999887 444 454 8888899987654321
Q ss_pred ----HhCC------eeeeecC-Ccccccc--C---CCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecc
Q 018172 106 ----YLRS------GLYKWDG-DANTFDK--N---NGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAY 164 (360)
Q Consensus 106 ----~~g~------~~~~~~~-~~~~~~~--~---~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay 164 (360)
..|+ ++..++. |.+.++. + +++++|+++..+||||.+++ +.+.++|+++|+++|+||+|
T Consensus 167 ~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~ 246 (434)
T 2epj_A 167 GVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVV 246 (434)
T ss_dssp CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred CCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcch
Confidence 1232 2444442 3333322 1 35666666655678998764 46778899999999999999
Q ss_pred cCCCCCcCC--CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHH---hhccccCChHHHHHHHHHhcccCCC
Q 018172 165 YWPQYTPIT--GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI---ELGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 165 ~~~~~~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
.+....... ...+...-+.||||.++ .|+|+||+++ ++++++.+.... ...+++.|++.+.++.++++.+.+
T Consensus 247 ~g~~~g~~~~~~~~~~~~di~s~sK~l~-~G~~~G~v~~-~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~- 323 (434)
T 2epj_A 247 TGFRLGLEGAQGYFNIEGDIIVLGKIIG-GGFPVGAVAG-SREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE- 323 (434)
T ss_dssp TTTTSSTTHHHHHHTCCCSEEEEEGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH-
T ss_pred hceeCCcchhhHHhCCCCCeeeecchhc-CCcceeeeee-cHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh-
Confidence 843211100 11111122459999999 5999999999 788888776521 224567888999888888874421
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhc----CCcccCCCCCcccccccccCCCCCCcccccCCc----------------h
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----------------D 299 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~ 299 (360)
++..++++++++++.+.|+++ +..... ++.++|+|+.+++ .
T Consensus 324 -----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 384 (434)
T 2epj_A 324 -----EPVYSVSREAAKALEEAASEVLDRTGLPYTI--------------NRVESMMQLFIGVEEVSNAAQARKADKKFY 384 (434)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEE--------------EEETTEEEEEETCSCCSSHHHHTTSCHHHH
T ss_pred -----cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEE--------------EEeeeEEEEEEeCCCcccchhccccCHHHH
Confidence 245566666777777777654 321111 1233466766643 1
Q ss_pred HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 300 EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 300 ~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
..+.+.|.++||.+.||. ...+|+++..+++++++++++|++++++.
T Consensus 385 ~~~~~~l~~~Gv~v~~~~-----~~~~~~~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 385 VKLHEEMLRRGVFIAPSN-----LEAVFTGLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp HHHHHHHHHTTEECCSST-----TSCEECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEeccC-----CCcEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 556777788999999974 23578887669999999999999988653
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=191.50 Aligned_cols=270 Identities=13% Similarity=0.025 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc---C----------C-CCCCCceEEEeCCCCCCcHHHH
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS---S----------P-GGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~---~----------~-gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
.++++.++++++. ...++|++|+|+++++..++..+. + + |+. |++.+|.|..+...+
T Consensus 104 ~~la~~la~~~~~-----~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~----Vi~~~~~yhg~~~~~ 174 (449)
T 2cjg_A 104 ARFVETFARVLGD-----PALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQ----VLHLRGAFHGRSGYT 174 (449)
T ss_dssp HHHHHHHHHHHCC-----TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCE----EEEETTCCCCSSTTG
T ss_pred HHHHHHHHHhcCC-----CCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCE----EEEECCCcCCcccch
Confidence 6788888887751 134589999999999999987653 2 2 666 999999999875543
Q ss_pred HHh-C--------C-----eeeeecCCc---cc-------------ccc-----CCCeeEEEEcCCCCCCcc-cch----
Q 018172 105 DYL-R--------S-----GLYKWDGDA---NT-------------FDK-----NNGAYIEVVNSPNNPDGT-IRE---- 144 (360)
Q Consensus 105 ~~~-g--------~-----~~~~~~~~~---~~-------------~~~-----~~~~~~i~~~~p~NPtG~-~~~---- 144 (360)
... | . ++..++.+. +. ++. ++++++|+++.++||||. ..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l 254 (449)
T 2cjg_A 175 LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFF 254 (449)
T ss_dssp GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHH
T ss_pred hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHH
Confidence 222 2 1 344454332 21 322 256788777766789995 554
Q ss_pred HHHHHHhhhcCcEEEEeecccCCCCCc-C-C-C--CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHH-----HHH
Q 018172 145 AVLAKVNRSAEGKLIHDLAYYWPQYTP-I-T-G--AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMT-----RFI 214 (360)
Q Consensus 145 ~~~~~~~~~~~~~li~D~ay~~~~~~~-~-~-~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~-----~~~ 214 (360)
+.+.++|+++|+++|+||+|.+..... . . . ....+ +.||||.+ |+||+++ ++++++.+. ...
T Consensus 255 ~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~d--i~t~sK~l-----~iG~~~~-~~~~~~~l~~~~~~~~~ 326 (449)
T 2cjg_A 255 AAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPD--IVAFGKKT-----QVCGVMA-GRRVDEVADNVFAVPSR 326 (449)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCS--EEEECGGG-----SSEEEEE-CGGGGGSTTCTTTSTTS
T ss_pred HHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCce--EEEecCcc-----cEEEEEE-CHHHhhhhhhcccCCcc
Confidence 456788999999999999998432111 1 0 1 11122 34789987 6899998 678777532 222
Q ss_pred hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc----CC-cccCCCCCcccccccccCCCCC
Q 018172 215 ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS----GV-FGLPEYPLEYCNFTGKFTNSHP 289 (360)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~-~~~~~~~~~~~~~~~~~~~~~~ 289 (360)
...+++.|+++|.++.++++.+.+ ++..++++++++++.+.|+++ +. +... .+.+
T Consensus 327 ~~~t~~~n~~~~~aa~aal~~~~~------~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~--------------~~~g 386 (449)
T 2cjg_A 327 LNSTWGGNLTDMVRARRILEVIEA------EGLFERAVQHGKYLRARLDELAADFPAVVLDP--------------RGRG 386 (449)
T ss_dssp SCCSSSSCHHHHHHHHHHHHHHHH------HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEE--------------EEET
T ss_pred cccCCCCCHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeE--------------eecc
Confidence 335677899999999888874321 345667777888888888764 22 2111 1334
Q ss_pred CcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHHhc
Q 018172 290 GFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSM--LSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 290 ~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~ 350 (360)
+|+++++++. ..+.+.|.++||.+.|+. .+++|+++ ..++|++++++++|++++.+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 387 LMCAFSLPTTADRDELIRQLWQRAVIVLPAG-----ADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp TEEEEECSSHHHHHHHHHHHHHTTEECEEET-----TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECChHHHHHHHHHHHHCCeEEecCC-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 4677787652 556666778999999862 57999965 44999999999999998864
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-22 Score=187.26 Aligned_cols=257 Identities=14% Similarity=0.013 Sum_probs=169.0
Q ss_pred CCcEEEcCChHHHHHHHHHh---hcCCCCCCCceEEEeCCCCCCcHHHHHH--------------hCC------eeeeec
Q 018172 59 GRHIVIGTGSTQLYQAALYA---LSSPGGPEPISVVSAAPYYSQYPAETDY--------------LRS------GLYKWD 115 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~---l~~~gd~~~~~vl~~~p~~~~~~~~~~~--------------~g~------~~~~~~ 115 (360)
.++|++|+|+++++..++.. +.+ ++. |++.+|+|+.+...+.. .|. ++..++
T Consensus 108 ~~~v~~~~~g~ea~~~al~~ar~~~~-~~~----vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~ 182 (424)
T 2e7u_A 108 VDLVRFVNSGTEATMSALRLARGYTG-RPY----IVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLE 182 (424)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHC-CCE----EEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEEC
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhC-CCE----EEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCC
Confidence 35899999999999999886 554 454 89999999886543321 132 234444
Q ss_pred C-Ccccccc--C---CCeeEEEEcCCCCC-Ccccch-----HHHHHHhhhcCcEEEEeecccCCCCCcC--CCCCCccEE
Q 018172 116 G-DANTFDK--N---NGAYIEVVNSPNNP-DGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTPI--TGAADHDIM 181 (360)
Q Consensus 116 ~-~~~~~~~--~---~~~~~i~~~~p~NP-tG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~~--~~~~~~~i~ 181 (360)
. |.+.++. + ++++ +++.+|+|+ ||.+++ +.+.++ +++|+++|+||+|.+...... ....+...-
T Consensus 183 ~~d~~~le~~l~~~~~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~d 260 (424)
T 2e7u_A 183 YNDPEGLREVLKRRGEEIA-AIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELLGLKPD 260 (424)
T ss_dssp TTCHHHHHHHHHHHGGGEE-EEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHHTCCCS
T ss_pred CCCHHHHHHHHHhCCCCEE-EEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHhCCCcc
Confidence 2 3333322 1 3444 445566654 997754 356678 889999999999984321110 001111111
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHH---hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI---ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
+.||||.++ .|+|+||+++ ++++++.+.... ...+++.|++++.++.++++.+.+ .++..++++++++++
T Consensus 261 i~s~sK~l~-~G~~~G~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~~l 333 (424)
T 2e7u_A 261 LVTLGKILG-GGLPAAAYAG-RREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE-----NPGYYAYLEDLGARL 333 (424)
T ss_dssp EEEECGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH-----CTHHHHHHHHHHHHH
T ss_pred hhhhhhhhh-CCcceEEEEE-cHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHH
Confidence 349999999 6999999999 788888776521 224567889999888888874321 145667777777777
Q ss_pred HHHHHhc----CCcccCCCCCcccccccccCCCCCCcccccCCc-------------h---HHHHHHHHhhCeeeeCCCC
Q 018172 259 RQVIRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-------------D---EDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 259 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~l~~~gI~~~pg~~ 318 (360)
.+.|+++ +..... ++.++|+|+.+++ . ..+.+.|.++||.++||.
T Consensus 334 ~~~L~~~~~~~~~~~~~--------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~- 398 (424)
T 2e7u_A 334 EAGLKEVLKEKGLPHTV--------------NRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSN- 398 (424)
T ss_dssp HHHHHHHHHHTTCCCEE--------------EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSS-
T ss_pred HHHHHHHHHhCCCceEE--------------EeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccC-
Confidence 7777664 321111 1334467777653 1 456677778999999974
Q ss_pred CCCCCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 319 FGADAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 319 f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
...+|+++..+++++++++++|++++
T Consensus 399 ----~~~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 399 ----FEAAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp ----SSCEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ----CCceEeeccCCHHHHHHHHHHHHHhC
Confidence 23578887669999999999998764
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=186.65 Aligned_cols=285 Identities=13% Similarity=0.119 Sum_probs=189.4
Q ss_pred HHHHHH----HHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh----c---------CCCCCC--Cc-eEEEeCCCCC
Q 018172 39 PELAEA----INNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL----S---------SPGGPE--PI-SVVSAAPYYS 98 (360)
Q Consensus 39 ~~lr~~----la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l----~---------~~gd~~--~~-~vl~~~p~~~ 98 (360)
.++++. +++++|. .+.+++++|+|+|+++..++..+ + .+|..+ +. .|+++.++|.
T Consensus 139 ~~le~~~~~~la~~~g~-----~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~ 213 (497)
T 2qma_A 139 TYVEQKVVNWLCDKYDL-----SEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHF 213 (497)
T ss_dssp HHHHHHHHHHHHHHTTC-----CTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCT
T ss_pred HHHHHHHHHHHHHHhCC-----CCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchH
Confidence 555555 5555553 12258999999999999988874 2 122100 11 3999999999
Q ss_pred CcHHHHHHhCC---eeeeecCCcc------cccc--CC----C--eeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEE
Q 018172 99 QYPAETDYLRS---GLYKWDGDAN------TFDK--NN----G--AYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIH 160 (360)
Q Consensus 99 ~~~~~~~~~g~---~~~~~~~~~~------~~~~--~~----~--~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~ 160 (360)
++...+..+|. +++.++.+.+ .++. ++ + +.+|++++++||||.+.+ +.+.++|+++|+++++
T Consensus 214 s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~v 293 (497)
T 2qma_A 214 TVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHV 293 (497)
T ss_dssp HHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEE
Confidence 99999998876 7888887532 2211 11 2 348889999999999877 7888899999999999
Q ss_pred eecccCCCCCc-----CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhcccc----C----------
Q 018172 161 DLAYYWPQYTP-----ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIG----V---------- 221 (360)
Q Consensus 161 D~ay~~~~~~~-----~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~----~---------- 221 (360)
|++|+.+.... +.+....++++.|+||.++.| .++|+++++++..++.+.....+.... .
T Consensus 294 D~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 372 (497)
T 2qma_A 294 DGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATT 372 (497)
T ss_dssp EETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC--------------------CCS
T ss_pred ehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCC
Confidence 99998643221 112225578899999988745 699999986665444332110000000 0
Q ss_pred ---ChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCC-CCCcccccccccCCCCCCcccccCC
Q 018172 222 ---SKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPE-YPLEYCNFTGKFTNSHPGFAWLESK 297 (360)
Q Consensus 222 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
..+.+.+ +++.+ . ...+++..+++.++++++.+.|++++++.+.. +... ++++++.
T Consensus 373 r~~~al~~~~---~l~~l-g--~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~--------------~v~f~~~ 432 (497)
T 2qma_A 373 KRFDALKVFM---TMQNV-G--PKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLS--------------TVLFRAT 432 (497)
T ss_dssp CCCTHHHHHH---HHHHT-C--HHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSS--------------EEEEEEC
T ss_pred CchhHHHHHH---HHHHh-C--HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCce--------------EEEEEEc
Confidence 1122222 23322 1 26788888999999999999999987766543 3222 3444432
Q ss_pred c--------hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe-c--CChHHHHHHHHHHHHHHhc
Q 018172 298 E--------DEDCEKLLRAERIMARGGRRFGADAKYARVSM-L--SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 298 ~--------~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~-~--~~~e~~~~~~~~l~~~~~~ 350 (360)
. ...+.+.|.++|+.+.++..+. +.+++|+++ . .+++++++++++|++++.+
T Consensus 433 ~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~-g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 433 HETADLDELNKALRLEALTRGIAVLGETIVD-GKTALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSCBCEEEEET-TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhCCCEEEEeeEEC-CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 2 1346677888899987755454 256899998 3 3899999999999998764
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-20 Score=173.72 Aligned_cols=210 Identities=13% Similarity=0.042 Sum_probs=157.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEE--cCChHHHHHHHHHhhcCCCCCCCceEEEeC-CCCCCcHH----------HH
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVI--GTGSTQLYQAALYALSSPGGPEPISVVSAA-PYYSQYPA----------ET 104 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~--t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~-p~~~~~~~----------~~ 104 (360)
..+|++.++++++. ++.+++ ++|+++++..++.+++++||+ |+++. |.|..+.. .+
T Consensus 61 ~~~Le~~lA~l~g~-------e~alv~p~~~sGt~Ai~~al~all~~GD~----Vl~~~~~~y~~~~~~~~~~g~~~~~l 129 (409)
T 3jzl_A 61 RDTLERVYATVFKT-------EAALVRPQIISGTHAISTVLFGILRPDDE----LLYITGQPYDTLEEIVGIRKQGQGSL 129 (409)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEETTSCSHHHHHHHHHHHHCCTTCE----EEECSSSCCTTHHHHHTSSSSSSSCT
T ss_pred HHHHHHHHHHHhCC-------CcEEEECCCccHHHHHHHHHHHhcCCCCE----EEEeCCCCcHhHHHHHhcccchhhHH
Confidence 48999999999994 334443 888999999999999999998 99998 99999885 44
Q ss_pred HHhCCeeeeecCCccc------ccc--CCCeeEEEEcC----CCCCCcccch-HHHHHHhhh--cCcEEEEeecccCCCC
Q 018172 105 DYLRSGLYKWDGDANT------FDK--NNGAYIEVVNS----PNNPDGTIRE-AVLAKVNRS--AEGKLIHDLAYYWPQY 169 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~~------~~~--~~~~~~i~~~~----p~NPtG~~~~-~~~~~~~~~--~~~~li~D~ay~~~~~ 169 (360)
+..|++++.++.+.++ +.. ++++++|++++ |+||||.+.+ +.+.++|++ +|+++++|++|..+..
T Consensus 130 ~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~ 209 (409)
T 3jzl_A 130 KDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVE 209 (409)
T ss_dssp GGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTS
T ss_pred HHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccc
Confidence 6679999998875332 221 46899999999 9999999988 678889998 9999999999986542
Q ss_pred CcCCCCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHHHhhcc----ccCChHHHHHHHHHhcccCCCchhHH
Q 018172 170 TPITGAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRFIELGS----IGVSKESQLRAAKILGIVSDDYPNFF 244 (360)
Q Consensus 170 ~~~~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (360)
...+...+.+++++|+||.++.+| .+.||+++ ++++++.+........ .+.....+.++...+ ..+
T Consensus 210 ~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~-~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl--------~~~ 280 (409)
T 3jzl_A 210 YQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAG-KEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGF--------FLA 280 (409)
T ss_dssp SCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEE-CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH--------HHH
T ss_pred cCCccccCCeEEEECccccCCccCCceEEEEEe-CHHHHHHHHHHhccccccccccccHHHHHHHHHHH--------hhH
Confidence 222334567899999999998555 34689988 8999999987543211 122111122332222 334
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 018172 245 EYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
...+++..++..++.+.|++++.
T Consensus 281 ~~r~~~~~~~a~~la~~L~~~g~ 303 (409)
T 3jzl_A 281 PHVTAQAIKGARFTAAMLAEFGV 303 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 56667778888999999999864
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=178.09 Aligned_cols=211 Identities=12% Similarity=0.043 Sum_probs=157.8
Q ss_pred ccHHHHHHHHHHHhhcCCCCCCCCcEEE--cCChHHHHHHHHHhhcCCCCCCCceEEEeC-CCCCCcHH-----------
Q 018172 37 LVPELAEAINNLHHVVDNAVSDGRHIVI--GTGSTQLYQAALYALSSPGGPEPISVVSAA-PYYSQYPA----------- 102 (360)
Q Consensus 37 ~~~~lr~~la~~~~~~~~~~~~~~~i~~--t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~-p~~~~~~~----------- 102 (360)
+..+|++.++++++. ++.++. ++|+++++..++.+++++||+ |++++ |.|..+..
T Consensus 74 ~~~~Le~~lA~l~g~-------e~alv~p~~~sGt~Ai~~al~all~pGD~----Vl~~~~~~y~~~~~~~g~~~~~~~~ 142 (427)
T 3i16_A 74 GRDSLDAVYARVFNT-------ESALVRPHFVNGTHALGAALFGNLRPGNT----MLSVCGEPYDTLHDVIGITENSNMG 142 (427)
T ss_dssp HHHHHHHHHHHHHTC-------SEEEEETTCCSHHHHHHHHHHHHCCTTCE----EEESSSSCCGGGHHHHTCSCCCSSC
T ss_pred HHHHHHHHHHHHhCC-------cceEEeCCCccHHHHHHHHHHHHhCCCCE----EEEeCCCccHHHHHHHhccccchHH
Confidence 359999999999995 334443 788899999999999999998 99998 99998874
Q ss_pred HHHHhCCeeeeecCCccc------ccc--C--CCeeEEEEcC----CCCCCcccch-HHHHHHhhh--cCcEEEEeeccc
Q 018172 103 ETDYLRSGLYKWDGDANT------FDK--N--NGAYIEVVNS----PNNPDGTIRE-AVLAKVNRS--AEGKLIHDLAYY 165 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~~------~~~--~--~~~~~i~~~~----p~NPtG~~~~-~~~~~~~~~--~~~~li~D~ay~ 165 (360)
.++..|++++.++.+.++ +.. + +++++|++++ |+||||.+.+ +.+.++|++ +|+++++|++|.
T Consensus 143 ~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~ 222 (427)
T 3i16_A 143 SLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYG 222 (427)
T ss_dssp CTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTT
T ss_pred HHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 445679999998875332 221 3 6899999999 9999999988 778889998 999999999998
Q ss_pred CCCCCcCCCCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHHHhhcccc--CCh-HH-HHHHHHHhcccCCCc
Q 018172 166 WPQYTPITGAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRFIELGSIG--VSK-ES-QLRAAKILGIVSDDY 240 (360)
Q Consensus 166 ~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~--~~~-~~-~~~~~~~l~~~~~~~ 240 (360)
.+.+...+...+.+++++|+||.++.+| .+.||+++ ++++++.+.........+ ..+ .. ...+...+
T Consensus 223 ~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~-~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl------- 294 (427)
T 3i16_A 223 EFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAG-TKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGL------- 294 (427)
T ss_dssp TTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEE-CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH-------
T ss_pred cccccCCccccCCeEEEecCcccCCCCCCceEEEEEE-CHHHHHHHHHhcccCccCccCCccHHHHHHHHHHH-------
Confidence 6542222234567899999999998555 56799998 899999998754322222 111 21 22222222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
..+....++..++..++.+.|++++.
T Consensus 295 -~~~~~r~~~~~~~a~~la~~L~~~g~ 320 (427)
T 3i16_A 295 -FLAPHISMEALKGAILCSRIMELAGF 320 (427)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34456777888888999999999964
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-20 Score=172.68 Aligned_cols=277 Identities=12% Similarity=-0.038 Sum_probs=185.7
Q ss_pred ccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-------cCCCCCCCceEEEeCCCCCC
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-------SSPGGPEPISVVSAAPYYSQ 99 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-------~~~gd~~~~~vl~~~p~~~~ 99 (360)
|.+..+. .++|++++++++. + ++++++++++++..++..+ .++||+ |+++.|+|..
T Consensus 30 ~~~~~~~-----~~l~~~la~~~~~-------~-~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~----Vi~~~~~~~~ 92 (390)
T 3b8x_A 30 FTMGEYV-----KQYETQFAKTFGS-------K-YAVMVSSGSTANLLMIAALFFTKKPRLKKGDE----IIVPAVSWST 92 (390)
T ss_dssp CSSCHHH-----HHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCE----EEEESSSCHH
T ss_pred CCCChHH-----HHHHHHHHHHHCC-------C-cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCE----EEECCCCcHH
Confidence 4444555 9999999999985 2 5677777789999999998 778887 9999999999
Q ss_pred cHHHHHHhCCeeeeecCCccc--ccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC
Q 018172 100 YPAETDYLRSGLYKWDGDANT--FDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 100 ~~~~~~~~g~~~~~~~~~~~~--~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
+...+...|++++.++.+.+. ++. ++++++|++++ ++|...+ +.+.++|+++|+++|+|++|+.+..
T Consensus 93 ~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~ 169 (390)
T 3b8x_A 93 TYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINKIIGGRDIILLEDNCESMGAT 169 (390)
T ss_dssp HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCE
T ss_pred HHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHHHHHHcCCEEEEECcCcccCE
Confidence 999999999999999877542 211 35789998874 5666555 6788888889999999999985432
Q ss_pred CcCCCCCCc--cEEEecc--ccccCCCCceEEEEeecCHHHHHHHHHHHhhcc---------------------------
Q 018172 170 TPITGAADH--DIMLFTL--SKCTGHAGSRIGWALVKDTEVARKMTRFIELGS--------------------------- 218 (360)
Q Consensus 170 ~~~~~~~~~--~i~~~S~--sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~--------------------------- 218 (360)
... ...+. ++...|+ +|.++ +| +.|+++++++++.+.+........
T Consensus 170 ~~~-~~~g~~~~~~~~s~~~~k~~~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (390)
T 3b8x_A 170 FNN-KCAGTFGLMGTFSSFYSNHIA-TM-EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVL 246 (390)
T ss_dssp ETT-EETTSSSSEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCS
T ss_pred ECC-cccccccceEEEEccCCCCCc-cC-CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceec
Confidence 211 12222 3333332 34443 33 349999855678777766542110
Q ss_pred cc----CChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccc
Q 018172 219 IG----VSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWL 294 (360)
Q Consensus 219 ~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (360)
.+ .+.+...++...+ +.+++..++.+++++++.+.|++++++.+..+.. . .....+++
T Consensus 247 ~g~~~~~~~~~aa~~l~~l--------~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~---------~~~~~~~i 308 (390)
T 3b8x_A 247 PGYNVRPLEMSGAIGIEQL--------KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETG-E---------SSWFGFSF 308 (390)
T ss_dssp CCCBCCCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCS-B---------CCCCEEEE
T ss_pred cccccCcCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCC-C---------cccEEEEE
Confidence 11 3333333332222 5567888888999999999999887665543210 0 00111344
Q ss_pred cCC-----chHHHHHHHHhhCeeeeCC---CCCCC----C-----------------CCeEEEEecC--ChHHHHHHHHH
Q 018172 295 ESK-----EDEDCEKLLRAERIMARGG---RRFGA----D-----------------AKYARVSMLS--REEIFNIFLER 343 (360)
Q Consensus 295 ~~~-----~~~~~~~~l~~~gI~~~pg---~~f~~----~-----------------~~~~R~s~~~--~~e~~~~~~~~ 343 (360)
.++ +.+.+.+.|.++||.+++. ..+.. . .+.+||++.. ++||+++++++
T Consensus 309 ~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~ 388 (390)
T 3b8x_A 309 IIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREV 388 (390)
T ss_dssp EECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHH
T ss_pred EecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHh
Confidence 444 2377888888999999873 21100 0 1259999866 89999999887
Q ss_pred H
Q 018172 344 L 344 (360)
Q Consensus 344 l 344 (360)
|
T Consensus 389 l 389 (390)
T 3b8x_A 389 L 389 (390)
T ss_dssp T
T ss_pred h
Confidence 6
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-20 Score=185.13 Aligned_cols=292 Identities=12% Similarity=0.007 Sum_probs=195.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH-HHHhCCeeeeecC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE-TDYLRSGLYKWDG 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~-~~~~g~~~~~~~~ 116 (360)
..++++.+|+++|. ++.+++++|+++++..++.+++++||. |+++.|+|.++... +...|++++.++.
T Consensus 175 i~e~e~~lA~~~ga-------e~~i~v~nGtt~an~~ai~al~~pGD~----VLv~~~~H~S~~~~~~~l~Ga~~v~v~~ 243 (730)
T 1c4k_A 175 AVAAEKHAARVYNA-------DKTYFVLGGSSNANNTVTSALVSNGDL----VLFDRNNHKSVYNSALAMAGGRPVYLQT 243 (730)
T ss_dssp HHHHHHHHHHHTTC-------SEEEEESSHHHHHHHHHHHHHCCTTCE----EEEETTCCHHHHHHHTTTTCCEEEEECE
T ss_pred HHHHHHHHHHHHCC-------CcEEEECCHHHHHHHHHHHHhcCCCCE----EEEcCCchHHHHHHHHHHCCCEEEEEeC
Confidence 59999999999995 456889999999999999999999998 99999999999888 8888999887653
Q ss_pred -----------Ccccc-----cc--CCC------e----eEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCC
Q 018172 117 -----------DANTF-----DK--NNG------A----YIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWP 167 (360)
Q Consensus 117 -----------~~~~~-----~~--~~~------~----~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~ 167 (360)
|.+.+ .. +++ + +++++++| ||+|.+.+ +.+.++|+++++++++|++|+..
T Consensus 244 ~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~ 322 (730)
T 1c4k_A 244 NRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGY 322 (730)
T ss_dssp EECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCG
T ss_pred CccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccc
Confidence 44444 22 222 4 89999999 58999988 77888899899999999999731
Q ss_pred -CCC-------cCCC-C----CCccEEEeccccccCCCCceE-EEEeecCHHH--------HHHHHHHH-hhccccCChH
Q 018172 168 -QYT-------PITG-A----ADHDIMLFTLSKCTGHAGSRI-GWALVKDTEV--------ARKMTRFI-ELGSIGVSKE 224 (360)
Q Consensus 168 -~~~-------~~~~-~----~~~~i~~~S~sK~~~~~G~r~-G~~~~~~~~~--------~~~l~~~~-~~~~~~~~~~ 224 (360)
.+. ++.. . ..++++++|+||.++ |.+. |+++.+++.+ ...+.... ...+.+++..
T Consensus 323 ~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~--g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~ 400 (730)
T 1c4k_A 323 EQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA--GFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYP 400 (730)
T ss_dssp GGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS--CCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHH
T ss_pred cccCcccCCcCcccccccCCCCCCEEEEECCCCCCC--CCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHH
Confidence 111 1211 1 224499999999865 5544 5564433321 12232222 1223345545
Q ss_pred HHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHh-cCCcccCCCCCc---------------ccccccc-----
Q 018172 225 SQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQ-SGVFGLPEYPLE---------------YCNFTGK----- 283 (360)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~---------------~~~~~~~----- 283 (360)
...++.++++.+.. ...++..+++.++.+.+.+.|++ ++++.+..+... ...++..
T Consensus 401 ~iaal~aA~~~l~~---~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (730)
T 1c4k_A 401 MYAALDVNAAMQEG---EAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAK 477 (730)
T ss_dssp HHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCT
T ss_pred HHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccch
Confidence 44444444543321 24456667788888889999988 667766554320 0000000
Q ss_pred ----cCCCCC-Cc-----ccccCC--------------chHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC--ChHHH
Q 018172 284 ----FTNSHP-GF-----AWLESK--------------EDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS--REEIF 337 (360)
Q Consensus 284 ----~~~~~~-~~-----~~~~~~--------------~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~--~~e~~ 337 (360)
.....+ ++ +.+.++ ....+.+.|+++||.+... +...+|++++. +++++
T Consensus 478 ~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~-----~~~~ir~~~s~g~t~e~i 552 (730)
T 1c4k_A 478 WHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS-----DLNSILFLMTPAETPAKM 552 (730)
T ss_dssp TTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE-----CSSEEEEECCTTCCHHHH
T ss_pred hccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC-----CCCeEEEEeCCCCCHHHH
Confidence 000001 01 334442 1277888898999988652 25678998866 88999
Q ss_pred HHHHHHHHHHHhch
Q 018172 338 NIFLERLSAIQGGS 351 (360)
Q Consensus 338 ~~~~~~l~~~~~~~ 351 (360)
++++++|.++.+..
T Consensus 553 ~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 553 NNLITQLLQLQRLI 566 (730)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998654
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=176.77 Aligned_cols=211 Identities=15% Similarity=0.039 Sum_probs=156.5
Q ss_pred cccHHHHHHHHHHHhhcCCCCCCCCcEEE---cCChHHHHHHHHHhhcCCCCCCCceEEEeC-CCCCCcH----------
Q 018172 36 FLVPELAEAINNLHHVVDNAVSDGRHIVI---GTGSTQLYQAALYALSSPGGPEPISVVSAA-PYYSQYP---------- 101 (360)
Q Consensus 36 ~~~~~lr~~la~~~~~~~~~~~~~~~i~~---t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~-p~~~~~~---------- 101 (360)
++..+|++.++++++. + ..++ ++|+++++..++.+++++||+ |++++ |.|..+.
T Consensus 74 ~g~~~Le~~lA~l~g~-------e-~alv~p~~~sGt~A~~~al~all~pGD~----Vl~~~~~~y~~~~~~~g~~~~~~ 141 (427)
T 3hvy_A 74 IGRDSLDRVYANIFNT-------E-SAFVRPHFVNGTHAIGAALFGNLRPNDT----MMSICGMPYDTLHDIIGMDDSKK 141 (427)
T ss_dssp HHHHHHHHHHHHHHTC-------S-EEEEETTCCSHHHHHHHHHHHTCCTTCE----EEECSSSCCGGGHHHHTCCTTCC
T ss_pred hhHHHHHHHHHHHhCC-------C-ceEEeCCCCcHHHHHHHHHHHhcCCCCE----EEEeCCCCchhHHHHhccccchh
Confidence 3359999999999994 3 3455 788899999999999999998 99998 9999887
Q ss_pred -HHHHHhCCeeeeecCC-----cccccc--C--CCeeEEEEcC----CCCCCcccch-HHHHHHhhh--cCcEEEEeecc
Q 018172 102 -AETDYLRSGLYKWDGD-----ANTFDK--N--NGAYIEVVNS----PNNPDGTIRE-AVLAKVNRS--AEGKLIHDLAY 164 (360)
Q Consensus 102 -~~~~~~g~~~~~~~~~-----~~~~~~--~--~~~~~i~~~~----p~NPtG~~~~-~~~~~~~~~--~~~~li~D~ay 164 (360)
..++..|++++.++.+ .+.+.. + +++|+|++++ |+||||.+.+ +.+.++|++ +|+++++|++|
T Consensus 142 ~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~ 221 (427)
T 3hvy_A 142 VGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCY 221 (427)
T ss_dssp SCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred hhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence 3456679999988862 222222 3 7899999999 9999999988 778889998 89999999999
Q ss_pred cCCCCCcCCCCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHHHhhcccc--C-ChHH-HHHHHHHhcccCCC
Q 018172 165 YWPQYTPITGAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRFIELGSIG--V-SKES-QLRAAKILGIVSDD 239 (360)
Q Consensus 165 ~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~--~-~~~~-~~~~~~~l~~~~~~ 239 (360)
..+.+...+...+.+++++|+||.++..| .+.||+++ ++++++.+.........+ . +.+. ...+...+
T Consensus 222 ~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~-~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl------ 294 (427)
T 3hvy_A 222 GEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAG-KEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGL------ 294 (427)
T ss_dssp CTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEE-CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH------
T ss_pred cccccCCCCcccCCeEEEECCcccccccccceEEEEEE-CHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhH------
Confidence 86542222234567899999999998544 45689888 899999998754322222 1 1122 22332222
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
.......++..++..++.+.|++++.
T Consensus 295 --~~~~~r~~~~~~~a~~la~~L~~~g~ 320 (427)
T 3hvy_A 295 --FMAPHVTIEAVKGAVFCARIMELAGF 320 (427)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33445667788888899999999864
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=182.63 Aligned_cols=294 Identities=15% Similarity=0.097 Sum_probs=189.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc-------C-CCCC--CCceEEEeCCCCCCcHHHHHHhCC
Q 018172 40 ELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS-------S-PGGP--EPISVVSAAPYYSQYPAETDYLRS 109 (360)
Q Consensus 40 ~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~-------~-~gd~--~~~~vl~~~p~~~~~~~~~~~~g~ 109 (360)
++++.+++++|. +.+++++|+|+|+++..++..+. + +|+. .+..|+++.++|.++...++.+|.
T Consensus 152 ~~~~~la~l~g~------~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~ 225 (515)
T 2jis_A 152 EVLRKLRALVGW------SSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGL 225 (515)
T ss_dssp HHHHHHHHHHTC------SSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS
T ss_pred HHHHHHHHHhCC------CCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCC
Confidence 345556667764 34689999999999888877763 2 4641 011399999999999999999888
Q ss_pred ---eeeeecCCccc-ccc-------CC------CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCc
Q 018172 110 ---GLYKWDGDANT-FDK-------NN------GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTP 171 (360)
Q Consensus 110 ---~~~~~~~~~~~-~~~-------~~------~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~ 171 (360)
+++.++.+.++ ++. ++ ++++|++++|+||||.+.+ +.+.++|+++|+++++|++|+.+....
T Consensus 226 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~ 305 (515)
T 2jis_A 226 GTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLS 305 (515)
T ss_dssp CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGC
T ss_pred CCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhC
Confidence 88888876332 111 11 4899999999999999988 788889999999999999998643221
Q ss_pred ------CCCCCCccEEEeccccccCCCCceEEEEeecCH-HHHHHHH----HHH-hh----------ccc------cCCh
Q 018172 172 ------ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDT-EVARKMT----RFI-EL----------GSI------GVSK 223 (360)
Q Consensus 172 ------~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~-~~~~~l~----~~~-~~----------~~~------~~~~ 223 (360)
+.+..+.++++.|++|.++ .+.++|+++++++ ++++... ... .. .+. ....
T Consensus 306 ~~~~~~~~g~~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~a 384 (515)
T 2jis_A 306 QTHRHLLDGIQRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDC 384 (515)
T ss_dssp TTTGGGGTTGGGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCH
T ss_pred hhhHhhcCCCccCCEEEECcccccC-CCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccH
Confidence 2223366899999999887 3457999998555 4555421 111 00 000 0113
Q ss_pred HHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC-CcccccccccCCCCCCcccc-cCCch--
Q 018172 224 ESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYP-LEYCNFTGKFTNSHPGFAWL-ESKED-- 299 (360)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~-- 299 (360)
+.+.++...+. ...+++..++..++++++.+.|++++++.+..+. ...++|... +. ..-.. +..+-
T Consensus 385 l~~~~~l~~lg------~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~--p~--~~~~~~~~~~~~~ 454 (515)
T 2jis_A 385 LKLWLMWKAQG------DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFV--PP--SLRGKQESPDYHE 454 (515)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEEC--CG--GGTTCTTSTTHHH
T ss_pred HHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEe--Cc--cccccccchhHHH
Confidence 33333433332 2667888899999999999999998777765432 222222100 00 00000 00010
Q ss_pred ------HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec---CChHHHHHHHHHHHHHHhc
Q 018172 300 ------EDCEKLLRAERIMARGGRRFGADAKYARVSML---SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 300 ------~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~---~~~e~~~~~~~~l~~~~~~ 350 (360)
..+.+.|.+.|+.+..........+++|++++ .+++++++++++|++++++
T Consensus 455 ~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 455 RLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp HHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 12556677788765321111112468999994 3899999999999988754
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-20 Score=171.45 Aligned_cols=278 Identities=12% Similarity=0.049 Sum_probs=198.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCC-CCcEEE-cCChHHHHHHHHHhhcCCCCCCCceEE-EeCCCCC-CcHHHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSD-GRHIVI-GTGSTQLYQAALYALSSPGGPEPISVV-SAAPYYS-QYPAETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~-~~~i~~-t~G~t~~l~~~~~~l~~~gd~~~~~vl-~~~p~~~-~~~~~~~~~g~~~~~ 113 (360)
+++.|+.++++++. + +++|++ |+|+|+++++++..++ +||+ +. +..-.|. .....++..|+++..
T Consensus 52 ~~~~r~~la~ll~~------~~~~~v~f~t~~~T~a~n~~~~~~~-~~~~----~~~i~~~~~~~~~~~~a~~~G~~v~~ 120 (361)
T 3m5u_A 52 HFGAQEKAKKLYEL------NDDYEVLFLQGGASLQFAMIPMNLA-LNGV----CEYANTGVWTKKAIKEAQILGVNVKT 120 (361)
T ss_dssp HHHHHHHHHHHHTC------CTTEEEEEESSHHHHHHHHHHHHHC-CSSC----EEEEECSHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHhCC------CCCceEEEEcCcHHHHHHHHHHhcC-CCCe----EEEEeCCHHHHHHHHHHHHcCCceEE
Confidence 47889999999986 3 457888 9999999999999998 7876 42 2222232 123445667999988
Q ss_pred ecCCccc-c--c----cCCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccc
Q 018172 114 WDGDANT-F--D----KNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLS 186 (360)
Q Consensus 114 ~~~~~~~-~--~----~~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~s 186 (360)
++.+.++ + . .++++++|.+++..|.||...++ +++ +|+++++|.+++.++.+.... +.++++.|.+
T Consensus 121 ~~~~~~g~~~~~~~~~l~~~t~lv~~~~~e~~tG~~~~~----i~~-~~~~~~vD~~q~~g~~~id~~--~~d~~~~s~~ 193 (361)
T 3m5u_A 121 VASSEESNFDHIPRVEFSDNADYAYICSNNTIYGTQYQN----YPK-TKTPLIVDASSDFFSRKVDFS--NIALFYGGVQ 193 (361)
T ss_dssp EEECTTTTSCSCCCCCCCTTSSEEEEESEETTTTEECSS----CCC-CSSCEEEECGGGTTSSCCCCT--TEEEEEEETT
T ss_pred EecccCcCCCcCChhhcCCCCCEEEEeCCCCCcceeCCc----ccc-cCCEEEEEcccccCCCCCCcc--cCCEEEEech
Confidence 8766544 1 1 34689999998888889998774 456 599999999998776554444 3568999999
Q ss_pred cccCCCCceEEEEeecCHHHHHHHHH-----------H--HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHH
Q 018172 187 KCTGHAGSRIGWALVKDTEVARKMTR-----------F--IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 187 K~~~~~G~r~G~~~~~~~~~~~~l~~-----------~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
|.+|++| +|+++. .+++.+.+.. . ......++|.....++.++++.+... .-++++.++.++
T Consensus 194 K~~gp~G--~g~l~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~--gG~~~i~~~~~~ 268 (361)
T 3m5u_A 194 KNAGISG--LSCIFI-RKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQ--GGLDKVHEKNSQ 268 (361)
T ss_dssp TTSSCTT--CEEEEE-EHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTT--TCHHHHHHHHHH
T ss_pred hccCCCc--cEEEEE-cHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHc--cCHHHHHHHHHH
Confidence 9999888 788887 6777766543 1 11122356667777777788766431 258999999999
Q ss_pred HHHHHHHHHHhcCCc-ccCCCCCcccccccccCCCCCCcccccCCc---h-HHHHHHHHhhCeeeeCCCCCCCCCCeEEE
Q 018172 254 RWNMLRQVIRQSGVF-GLPEYPLEYCNFTGKFTNSHPGFAWLESKE---D-EDCEKLLRAERIMARGGRRFGADAKYARV 328 (360)
Q Consensus 254 ~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~ 328 (360)
..+++++.|++++++ ....+... ..+..+.+.+++ . ..+...|+++||.+++|... .+.+|+
T Consensus 269 l~~~l~~~L~~~~g~~~~~~~~~~----------rs~~ivsf~~~~~~~~~~~~~~~L~~~gI~~~~g~~~---~g~iRi 335 (361)
T 3m5u_A 269 KATMLYECIDLSNGFYKGHADKKD----------RSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRI---LGGIRA 335 (361)
T ss_dssp HHHHHHHHHHTSTTSEEESSCGGG----------BCSSEEEEEESSCTTHHHHHHHHHHHTTEECCBCCTT---TCSEEE
T ss_pred HHHHHHHHHHHCCCeeeccCCHHH----------cCCeEEEEECCCchhhhHHHHHHHHHCCCEEecCCCc---cCeEEE
Confidence 999999999999754 32211110 111134455554 2 45678889999999887532 246999
Q ss_pred EecC--ChHHHHHHHHHHHHHHhch
Q 018172 329 SMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 329 s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
|+.. ++||+++++++|++++++.
T Consensus 336 S~~~~~t~edId~l~~al~~~~~~~ 360 (361)
T 3m5u_A 336 SIYNALNLDQVKTLCEFMKEFQGKY 360 (361)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EccCCCCHHHHHHHHHHHHHHHHhc
Confidence 9966 8999999999999998764
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-20 Score=177.96 Aligned_cols=300 Identities=12% Similarity=0.037 Sum_probs=198.4
Q ss_pred cccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcC--------------CCCCCCceE
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSS--------------PGGPEPISV 90 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~--------------~gd~~~~~v 90 (360)
.|....+. .++++++++++. ..|.+..+ +.+++|+|+|+++..++..+.+ +++. |
T Consensus 126 ~~~~~p~~-----~~le~~~~~~l~~~~g~~~~~-~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~----v 195 (511)
T 3vp6_A 126 TYEIAPVF-----VLMEQITLKKMREIVGWSSKD-GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLV----L 195 (511)
T ss_dssp CTTTCHHH-----HHHHHHHHHHHHHHHTCCSSS-CEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEE----E
T ss_pred CcccCchH-----HHHHHHHHHHHHHHhCCCCCC-CceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeE----E
Confidence 35544444 788888887743 33544333 4799999999999888877754 3444 9
Q ss_pred EEeCCCCCCcHHHHHHhCC---eeeeecCCccc------ccc--CC------CeeEEEEcCCCCCCcccch-HHHHHHhh
Q 018172 91 VSAAPYYSQYPAETDYLRS---GLYKWDGDANT------FDK--NN------GAYIEVVNSPNNPDGTIRE-AVLAKVNR 152 (360)
Q Consensus 91 l~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~------~~~--~~------~~~~i~~~~p~NPtG~~~~-~~~~~~~~ 152 (360)
++++++|.++...++.+|. +++.++.+.++ ++. ++ .+++|++++|+||||.+.+ +.+.++|+
T Consensus 196 ~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~ 275 (511)
T 3vp6_A 196 FTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICE 275 (511)
T ss_dssp EEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHH
T ss_pred EECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHH
Confidence 9999999999999999998 88888876432 211 11 2889999999999999977 77888999
Q ss_pred hcCcEEEEeecccCCCCC-----c-CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHh-hc--------
Q 018172 153 SAEGKLIHDLAYYWPQYT-----P-ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIE-LG-------- 217 (360)
Q Consensus 153 ~~~~~li~D~ay~~~~~~-----~-~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~-~~-------- 217 (360)
++|+++++|++|+.+... . +.+....+.++.+++|.++.| ..+|+++.+++++.+....... +.
T Consensus 276 ~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~ 354 (511)
T 3vp6_A 276 KYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQDKHYD 354 (511)
T ss_dssp HHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSC
T ss_pred HcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccCcccccc
Confidence 999999999999864321 1 112335578899999988744 6688888866665555421110 00
Q ss_pred ------cc----c--CChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCC---CCCccccccc
Q 018172 218 ------SI----G--VSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPE---YPLEYCNFTG 282 (360)
Q Consensus 218 ------~~----~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~~~~ 282 (360)
.. + .......++...+. ...+++..++..++.+++.+.|++++++.+.. |.....+|.
T Consensus 355 ~~~~~~~~~~~~~r~~~al~~~~al~~~g------~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~- 427 (511)
T 3vp6_A 355 VSYDTGDKAIQCGRHVDIFKFWLMWKAKG------TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFW- 427 (511)
T ss_dssp GGGCCGGGSSCSSCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEE-
T ss_pred cccCccCCCCCCCCchHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEE-
Confidence 00 0 11222333333221 27788999999999999999999988777764 322222211
Q ss_pred ccCCCCCCcccccCC----c----------hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec-C--ChHHHHHHHHHHH
Q 018172 283 KFTNSHPGFAWLESK----E----------DEDCEKLLRAERIMARGGRRFGADAKYARVSML-S--REEIFNIFLERLS 345 (360)
Q Consensus 283 ~~~~~~~~~~~~~~~----~----------~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~-~--~~e~~~~~~~~l~ 345 (360)
+.-.... + ...+.+.|.++|+.+......+...+++|++++ . +++++++++++|+
T Consensus 428 --------~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~ 499 (511)
T 3vp6_A 428 --------YIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIE 499 (511)
T ss_dssp --------ECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHH
T ss_pred --------EeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 0000010 0 135777888888765541111212357999984 3 8899999999999
Q ss_pred HHHhch
Q 018172 346 AIQGGS 351 (360)
Q Consensus 346 ~~~~~~ 351 (360)
++-+..
T Consensus 500 ~~~~~~ 505 (511)
T 3vp6_A 500 RLGQDL 505 (511)
T ss_dssp HHHC--
T ss_pred HHHHhh
Confidence 887653
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=173.20 Aligned_cols=280 Identities=13% Similarity=0.036 Sum_probs=175.4
Q ss_pred HHHH----HHHHHHHhhcCCCCCCCC---cEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH--------H
Q 018172 39 PELA----EAINNLHHVVDNAVSDGR---HIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA--------E 103 (360)
Q Consensus 39 ~~lr----~~la~~~~~~~~~~~~~~---~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~--------~ 103 (360)
.+++ +.+++++|. +.+ ..++++|+++++..++.+++++||+ |+++++.|.++.. .
T Consensus 99 ~~lE~~a~~~~a~l~g~------~~~~~~~~v~~~sGt~An~~al~al~~pGD~----Vl~~~~~h~g~l~h~~~~~~~~ 168 (490)
T 2a7v_A 99 DEIELLCQRRALEAFDL------DPAQWGVNVQPYSGSPANLAVYTALLQPHDR----IMGLDLPDGGHLTHGYMSDVKR 168 (490)
T ss_dssp THHHHHHHHHHHHHTTC------CTTTEEEECCCSSHHHHHHHHHHHHCCSCEE----CCC-------------------
T ss_pred HHHHHHHHHHHHHHcCC------CcccCceEEeCCchHHHHHHHHHHHcCCCCE----ecccCccccccccchhhhcchh
Confidence 3666 788888885 332 2345567899999999999999998 9999999875421 2
Q ss_pred HHHhCCe--eeeecCCcccccc----------CCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccC-----
Q 018172 104 TDYLRSG--LYKWDGDANTFDK----------NNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYW----- 166 (360)
Q Consensus 104 ~~~~g~~--~~~~~~~~~~~~~----------~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~----- 166 (360)
+...|.. ++.++++.+.... ..++++|+++.++||+...+ +.+.++|+++|+++++|++|..
T Consensus 169 i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~~~~dl-~~i~~ia~~~g~~livD~Ah~~glv~~ 247 (490)
T 2a7v_A 169 ISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDY-ARMREVCDEVKAHLLADMAHISGLVAA 247 (490)
T ss_dssp ------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCH-HHHHHHHHHTTCEEEEECGGGHHHHHT
T ss_pred HHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCCCcccH-HHHHHHHHHcCCEEEEccccccccccC
Confidence 3344543 3344444221111 13689999999999864322 6677888889999999999862
Q ss_pred CC-CCcCCCCCCccEEEeccccccCCCCceEEEEeecCH--------------HHHHHHHHHHhhcccc-CChHHHHHHH
Q 018172 167 PQ-YTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDT--------------EVARKMTRFIELGSIG-VSKESQLRAA 230 (360)
Q Consensus 167 ~~-~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~--------------~~~~~l~~~~~~~~~~-~~~~~~~~~~ 230 (360)
+. ..++ ...+++++|+||+++ |.|.|+++++++ ++.+.+++.......+ ++.....++.
T Consensus 248 g~~~~~~---~~aDiv~~S~hK~l~--Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla 322 (490)
T 2a7v_A 248 KVIPSPF---KHADIVTTTTHKTLR--GARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVA 322 (490)
T ss_dssp TSSCCGG---GTCSEEEEESSGGGC--SCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHH
T ss_pred CcCCCCC---CCCCEEEECCcccCc--cccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHH
Confidence 11 1222 246799999999874 567799998543 3566776654433333 3333333334
Q ss_pred HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHH
Q 018172 231 KILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLL 306 (360)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l 306 (360)
.++..... ..+++.++++.++++++.+.|++. ++.+... + ....++|+++.. ...+.+.|
T Consensus 323 ~Al~~~~~---~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~-~-----------t~t~lv~vdl~~~g~~~~~~~~~L 386 (490)
T 2a7v_A 323 VALKQACT---PMFREYSLQVLKNARAMADALLER-GYSLVSG-G-----------TDNHLVLVDLRPKGLDGARAERVL 386 (490)
T ss_dssp HHHHHHHS---HHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGG-S-----------CSSSEEEEECTTTTCCHHHHHHHH
T ss_pred HHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHc-CcEEecC-C-----------CCCeEEEEEeCCCCCCHHHHHHHH
Confidence 34543221 455778889999999999999987 4444321 1 122356777643 27788899
Q ss_pred HhhCeeeeCCCCCC----CCCCeEEEEec------CChHHHHHHHHHHHHHHhc
Q 018172 307 RAERIMARGGRRFG----ADAKYARVSML------SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 307 ~~~gI~~~pg~~f~----~~~~~~R~s~~------~~~e~~~~~~~~l~~~~~~ 350 (360)
++.||.+..+..++ ..+..+|++.. .++++++++++.|.+++..
T Consensus 387 ~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 387 ELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp HHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 99999998654332 13568999762 2789999999999998864
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-20 Score=171.74 Aligned_cols=281 Identities=11% Similarity=-0.008 Sum_probs=194.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCC-CcEEE-cCChHHHHHHHHHhhcCC--CCCCCceEEEeCCCCCCc--HHHHHHhCCee
Q 018172 38 VPELAEAINNLHHVVDNAVSDG-RHIVI-GTGSTQLYQAALYALSSP--GGPEPISVVSAAPYYSQY--PAETDYLRSGL 111 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~-~~i~~-t~G~t~~l~~~~~~l~~~--gd~~~~~vl~~~p~~~~~--~~~~~~~g~~~ 111 (360)
+++.|+.++++++. ++ ++|++ |+|+|+++++++..+..+ ||+ +++..-++... ...++..|..+
T Consensus 60 ~~~ar~~la~ll~~------~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~----v~~~~~g~~~~~~~~~a~~~G~~~ 129 (377)
T 3e77_A 60 INNTENLVRELLAV------PDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRC----ADYVVTGAWSAKAAEEAKKFGTIN 129 (377)
T ss_dssp HHHHHHHHHHHHTC------CTTEEEEEESSHHHHHHHHHHHHHGGGSTTCE----EEECCCSHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHHHHhCC------CCCCeEEEEcCchHHHHHHHHHhccCCCCCCe----EEEEECCHHHHHHHHHHHHhCCce
Confidence 37889999999986 33 57888 589999999999999865 787 77665544332 23455568777
Q ss_pred eeecCCcc------cc--ccCCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEe
Q 018172 112 YKWDGDAN------TF--DKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLF 183 (360)
Q Consensus 112 ~~~~~~~~------~~--~~~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~ 183 (360)
+.++.+.+ .+ ..++++++|.+++..|.||.+.+- +|+++|+++++|.+++.+..+......+ +++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~ 203 (377)
T 3e77_A 130 IVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFA 203 (377)
T ss_dssp ECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEE
T ss_pred EEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchh----hhccCCCEEEEEcccccCCCCCchhhcC--EEEE
Confidence 76665422 11 125789999999888889999886 4677999999999998776665555554 4788
Q ss_pred ccccccCCCCceEEEEeecCHHHHHHH----------HHH--HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 184 TLSKCTGHAGSRIGWALVKDTEVARKM----------TRF--IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 184 S~sK~~~~~G~r~G~~~~~~~~~~~~l----------~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
|.+|.+|++| +|+++.+ +++.+.+ ... ......++|.....++.++++.+... .-++++.++.
T Consensus 204 s~~K~~gp~G--~g~l~~~-~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~--GG~~~i~~~~ 278 (377)
T 3e77_A 204 GAQKNVGSAG--VTVVIVR-DDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNN--GGAAAMEKLS 278 (377)
T ss_dssp EGGGTTSCTT--CEEEEEE-TTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHT--THHHHHHHHH
T ss_pred ecccccCCCc--cEEEEEc-HHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHc--cCHHHHHHHH
Confidence 9999999888 6777663 3332111 111 11123456666777777788765431 2689999999
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----h---HHHHHHHHhhCeeeeCCCCCCCCCC
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----D---EDCEKLLRAERIMARGGRRFGADAK 324 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~l~~~gI~~~pg~~f~~~~~ 324 (360)
+++.+++++.|++++++.+....... ..+..+.+.+++ . ..+.+.|.++||.+++|... .+
T Consensus 279 ~~l~~~l~~~L~~~~g~~~~~~~~~~---------rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~---~g 346 (377)
T 3e77_A 279 SIKSQTIYEIIDNSQGFYVCPVEPQN---------RSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRS---VG 346 (377)
T ss_dssp HHHHHHHHHHHHTSTTSEECCSCGGG---------BCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTT---TC
T ss_pred HHHHHHHHHHHHhcCCceecCCCHHH---------cCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCc---CC
Confidence 99999999999999766532111110 011123444443 1 24556667899999988632 45
Q ss_pred eEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 325 YARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 325 ~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
.+|+|+.. ++|++++++++|++++++.
T Consensus 347 ~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 347 GIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 79999966 8999999999999998764
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-19 Score=178.01 Aligned_cols=291 Identities=9% Similarity=-0.008 Sum_probs=192.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
..++++.++++++. ++.+++++|+++++..++.+++++||. |+++.|+|.++...+...|++++.++.+
T Consensus 207 v~~~ee~la~l~G~-------d~~i~~~~Gtt~a~~~~i~al~~~GD~----Vlv~~~~h~s~~~~~~~~G~~~v~v~~~ 275 (755)
T 2vyc_A 207 FGESEKYAARVFGA-------DRSWSVVVGTSGSNRTIMQACMTDNDV----VVVDRNCHKSIEQGLMLTGAKPVYMVPS 275 (755)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEESSHHHHHHHHHHHHHCCTTCE----EEEESSCCHHHHHHHHHHCCEEEEECCC
T ss_pred HHHHHHHHHHHhCC-------CceEEECCcHHHHHHHHHHHhcCCCCE----EEECCCchHHHHHHHHHcCCEEEEEeCC
Confidence 48999999999995 357889999999999999999999998 9999999999999999999999988765
Q ss_pred cc--c----c-----cc---------CCCee--------EEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCC-
Q 018172 118 AN--T----F-----DK---------NNGAY--------IEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWP- 167 (360)
Q Consensus 118 ~~--~----~-----~~---------~~~~~--------~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~- 167 (360)
.+ + + +. .++++ ++++++| ||||.+.+ +.+.++|+++++++++|++|+..
T Consensus 276 ~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~ 354 (755)
T 2vyc_A 276 RNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_dssp BCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTG
T ss_pred CCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhc
Confidence 32 1 1 11 23444 8999998 69999988 77888899999999999999731
Q ss_pred --C-----CCcCC----C-CCCccEEEeccccccCCCCce-EEEEeecCH--HH-HHHHHHH-HhhccccCChHHHHHHH
Q 018172 168 --Q-----YTPIT----G-AADHDIMLFTLSKCTGHAGSR-IGWALVKDT--EV-ARKMTRF-IELGSIGVSKESQLRAA 230 (360)
Q Consensus 168 --~-----~~~~~----~-~~~~~i~~~S~sK~~~~~G~r-~G~~~~~~~--~~-~~~l~~~-~~~~~~~~~~~~~~~~~ 230 (360)
. ..++. + ...++++++|+||.++ |.+ .|+++.++. .+ ...+... ....+.+++.+...++.
T Consensus 355 ~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~--g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~ 432 (755)
T 2vyc_A 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN--ALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASND 432 (755)
T ss_dssp GGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSS--CCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHH
T ss_pred ccCcccCCcchhcCCcCCccCCCeEEEECcccccc--CcCCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0 11111 1 1234569999999864 555 566666332 11 1223222 22234456666555555
Q ss_pred HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC---------cccCCCCCc-------------------------
Q 018172 231 KILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV---------FGLPEYPLE------------------------- 276 (360)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---------~~~~~~~~~------------------------- 276 (360)
++++.+.. ...++..+++.++.+.+++.|+++++ +.+..+...
T Consensus 433 aA~~~l~~---~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (755)
T 2vyc_A 433 VAVSMMDG---NSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDC 509 (755)
T ss_dssp HHHHHHST---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGG
T ss_pred HHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhh
Confidence 55654432 22455666666777777777766544 333332210
Q ss_pred --------ccccccccCCC----CCCcccccCCc-------------hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec
Q 018172 277 --------YCNFTGKFTNS----HPGFAWLESKE-------------DEDCEKLLRAERIMARGGRRFGADAKYARVSML 331 (360)
Q Consensus 277 --------~~~~~~~~~~~----~~~~~~~~~~~-------------~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~ 331 (360)
...|... ..+ ...-+.+.+++ ...+.+.|+++||.+... +.+.+|++++
T Consensus 510 ~~~~~~~~~h~~~~~-~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~-----~~~~v~~~~~ 583 (755)
T 2vyc_A 510 WVMHPGESWHGFKDI-PDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRT-----TDFQIMFLFS 583 (755)
T ss_dssp TBCCTTCTTTCCTTC-CTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEE-----CSSEEEEECC
T ss_pred hccCccccccccccc-CCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeec-----CCCeEEEEEC
Confidence 0000000 000 11122333331 167888898999987542 3678999886
Q ss_pred C--ChHHHHHHHHHHHHHHhch
Q 018172 332 S--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 332 ~--~~e~~~~~~~~l~~~~~~~ 351 (360)
. +++++++++++|.++.+..
T Consensus 584 ~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 584 MGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp TTCCTTTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 6 8999999999999997643
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-22 Score=189.30 Aligned_cols=276 Identities=13% Similarity=0.032 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc--CCCCCCCceEEEeCCCCCCcHHHHH----HhCC--e
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS--SPGGPEPISVVSAAPYYSQYPAETD----YLRS--G 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~--~~gd~~~~~vl~~~p~~~~~~~~~~----~~g~--~ 110 (360)
.+|.+.+++++. ..+.+++++|+++++..++..+. ..++. |+..+++|......+. ..|. .
T Consensus 143 ~~Lae~L~~~~p-------~~~~v~~~nSGseA~~~Aik~ar~~tgr~~----ii~~~~~yHG~~~~~~sg~~~~g~~~~ 211 (465)
T 2yky_A 143 ALFAEAVCDRFP-------SIDLVRFTNSGTEANLMALATATAITGRKT----VLAFDGGYHGGLLNFASGHAPTNAPYH 211 (465)
Confidence 677777777763 12479999999999999988763 33465 9999999987654333 1233 2
Q ss_pred eeeec-CCcccccc--C---CCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCcC--CCCCC
Q 018172 111 LYKWD-GDANTFDK--N---NGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTPI--TGAAD 177 (360)
Q Consensus 111 ~~~~~-~~~~~~~~--~---~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~~--~~~~~ 177 (360)
+..++ .|.+.++. + +++++|++...+|+||.+.+ +.+.++|+++|+++|+||+|. ...... ....+
T Consensus 212 ~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~g 290 (465)
T 2yky_A 212 VVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLG 290 (465)
Confidence 23332 23333332 2 56778877655667997765 467788999999999999998 422111 12223
Q ss_pred ccEEEeccccccCCCCceEEEEeecCHHHHHHHHH-----HHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHH
Q 018172 178 HDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTR-----FIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMS 252 (360)
Q Consensus 178 ~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 252 (360)
...-+.||||.+| .|+|+||+++ ++++++.+.. .....+++.|+++|.++.++|+.+.+. ...++++
T Consensus 291 v~pDi~t~sK~lg-~G~piG~v~~-~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~------~~~~~~~ 362 (465)
T 2yky_A 291 ISADLTTLGKYIG-GGMSFGAFGG-RRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTR------QAASDLS 362 (465)
Confidence 3344669999999 5999999998 8899998876 234467789999999998888866432 3445555
Q ss_pred HHHHHHHHHHHhcC-CcccCCCCCcccccccccCCCCCCcccccCCc----------------hHHHHHHHHhhCeeeeC
Q 018172 253 ERWNMLRQVIRQSG-VFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----------------DEDCEKLLRAERIMARG 315 (360)
Q Consensus 253 ~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~gI~~~p 315 (360)
++.+++.+.|+++. ...+. ..+++.++++|+.+.+ ...+.+.|.++||.+.|
T Consensus 363 ~~~~~l~~~L~~~~~~~~~~-----------~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p 431 (465)
T 2yky_A 363 ASGDRFRANLNRIAVENQAP-----------LQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAP 431 (465)
Confidence 55555555555441 00000 0112344456665532 13466677789999999
Q ss_pred CCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 316 GRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 316 g~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
+. |+. +++..++|+++++++++.+++.+.+
T Consensus 432 ~~-~~~------~s~~~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 432 RG-MYA------LSLEIADAGRDAFAEALADFIGEQR 461 (465)
Confidence 65 321 7776799999999999999987653
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.8e-19 Score=169.92 Aligned_cols=287 Identities=12% Similarity=-0.030 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHh-hcCCCCCC-------CCcEEEcCChHHHHHHHHHhhcC-------------------CCCCCCceEE
Q 018172 39 PELAEAINNLHH-VVDNAVSD-------GRHIVIGTGSTQLYQAALYALSS-------------------PGGPEPISVV 91 (360)
Q Consensus 39 ~~lr~~la~~~~-~~~~~~~~-------~~~i~~t~G~t~~l~~~~~~l~~-------------------~gd~~~~~vl 91 (360)
.++++.+.+++. ..|.+... ....++|+|+|+++..++....+ +++. |+
T Consensus 117 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~----v~ 192 (481)
T 4e1o_A 117 TELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLV----AY 192 (481)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEE----EE
T ss_pred HHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeE----EE
Confidence 889999887754 33443211 12678999999999888776642 2344 99
Q ss_pred EeCCCCCCcHHHHHHhCCeeeeecCCccc-ccc-------CC------CeeEEEEcCCCCCCcccch-HHHHHHhhhcCc
Q 018172 92 SAAPYYSQYPAETDYLRSGLYKWDGDANT-FDK-------NN------GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEG 156 (360)
Q Consensus 92 ~~~p~~~~~~~~~~~~g~~~~~~~~~~~~-~~~-------~~------~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~ 156 (360)
+++++|.++...+...|.+++.++.+.++ ++. ++ .+++|+++.++|+||.+-+ +++.++|+++|+
T Consensus 193 ~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~ 272 (481)
T 4e1o_A 193 ASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGL 272 (481)
T ss_dssp EETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC
T ss_pred EcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCC
Confidence 99999999999999999999999876332 221 11 2678899999999999877 778889999999
Q ss_pred EEEEeecccCCCC-----CcC-CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHH-hhc------------
Q 018172 157 KLIHDLAYYWPQY-----TPI-TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI-ELG------------ 217 (360)
Q Consensus 157 ~li~D~ay~~~~~-----~~~-~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-~~~------------ 217 (360)
++++|++|+.... ... .+....+.++.++||.++.| ..+|+++.+++.......... .+.
T Consensus 273 ~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~ 351 (481)
T 4e1o_A 273 WLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFM 351 (481)
T ss_dssp EEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGG
T ss_pred eEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCC-CceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcc
Confidence 9999999985321 111 12223478889999988744 457777776666543211000 000
Q ss_pred --c--cc--CChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCc
Q 018172 218 --S--IG--VSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGF 291 (360)
Q Consensus 218 --~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (360)
. .+ .....+.++...+. ...++++.++..++.+++.+.|++++++.+..+... ++
T Consensus 352 ~~~~~~~r~~~~l~~~~al~~~g------~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~-------------~~ 412 (481)
T 4e1o_A 352 HWQIPLSRRFRSVKLWFVIRSFG------VKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHL-------------GL 412 (481)
T ss_dssp GGSSSSCCCCTHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCS-------------SE
T ss_pred cccccCCCCccHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCce-------------eE
Confidence 0 00 12333444433332 267888899999999999999999987777544322 25
Q ss_pred ccccCCc-h---HHHHHHHHhhCe-eeeCCCCCCCCCCeEEEEecC---ChHHHHHHHHHHHHHHhch
Q 018172 292 AWLESKE-D---EDCEKLLRAERI-MARGGRRFGADAKYARVSMLS---REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 292 ~~~~~~~-~---~~~~~~l~~~gI-~~~pg~~f~~~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~ 351 (360)
++++++. . ..+.+.|.++|+ .+.|+...+ ..++|+++.. +++++++++++|++++++.
T Consensus 413 v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g--~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 413 VVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQD--KLIIRFTVTSQFTTRDDILRDWNLIRDAATLI 478 (481)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHCSSBCEEEEETT--EEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCchHHHHHHHHHHHhCCeEEEEeeEECC--EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5666543 1 566777777774 445543322 4689999754 6899999999999988653
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=165.67 Aligned_cols=277 Identities=12% Similarity=0.025 Sum_probs=187.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCC-CcEEE-cCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC--cHHHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDG-RHIVI-GTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ--YPAETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~-~~i~~-t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~--~~~~~~~~g~~~~~ 113 (360)
+++.|+.++++++. ++ ++|++ |+|+|+++++++..++++||+ +++..-++.. +...++..| ++..
T Consensus 74 ~~~ar~~la~ll~~------~~~~evif~t~~~T~a~n~ai~~l~~~gd~----v~~~~~~~~~~~~~~~a~~~G-~v~~ 142 (386)
T 3qm2_A 74 AEEAEQDFRDLLNI------PSNYKVLFCHGGGRGQFAGVPLNLLGDKTT----ADYVDAGYWAASAIKEAKKYC-APQI 142 (386)
T ss_dssp CHHHHHHHHHHHTC------CTTEEEEEEESCTTHHHHHHHHHHCTTCCE----EEEEESSHHHHHHHHHHTTTS-EEEE
T ss_pred HHHHHHHHHHHhCC------CCCceEEEEcCCchHHHHHHHHhccCCCCe----EEEEeCCHHHHHHHHHHHHhC-CeEE
Confidence 48999999999996 43 47888 699999999999999999987 6544332222 233455568 8887
Q ss_pred ecCC--ccc--ccc-------CCCeeEEEEcCCCCCCccc-ch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccE
Q 018172 114 WDGD--ANT--FDK-------NNGAYIEVVNSPNNPDGTI-RE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDI 180 (360)
Q Consensus 114 ~~~~--~~~--~~~-------~~~~~~i~~~~p~NPtG~~-~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i 180 (360)
++.+ ..+ +.. +++|++|.+++-.|.||.. .+ +++ + +|+++++|.+++.+..+......+ +
T Consensus 143 v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~pi~~i---~--~g~~~~vDa~qs~g~~pidv~~~~--~ 215 (386)
T 3qm2_A 143 IDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDETPDF---G--PEVVVTADFSSTILSAPLDVSRYG--V 215 (386)
T ss_dssp EECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCCCCCC---C--TTCCEEEECTTTTTSSCCCGGGCS--E
T ss_pred EecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCchhhh---c--CCCEEEEEcccccCCCCCCccccC--E
Confidence 7766 333 221 4689999999888889996 44 333 2 799999999998776665555554 5
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHH----------HHHH--hhccccCChHHHHHHHHHhcccCCCchh-HHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKM----------TRFI--ELGSIGVSKESQLRAAKILGIVSDDYPN-FFEYG 247 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l----------~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 247 (360)
.+.|.+|.+|++| +|+++. .+++.+.+ .... .....++|.....++.++++.+.. . -++++
T Consensus 216 ~~~s~hK~lGP~G--~g~l~v-~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~---~gG~~~i 289 (386)
T 3qm2_A 216 IYAGAQKNIGPAG--LTLVIV-REDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKA---QGGVAAM 289 (386)
T ss_dssp EEEETTTTTCCTT--EEEEEE-EGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHH---HTHHHHH
T ss_pred EEEecccccCCCc--cEEEEE-CHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHH---hcCHHHH
Confidence 6789999999888 788777 34332111 1111 112235566666677777775532 3 48999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-h--HHHHHHHHhhCeeeeCCCCCCCCCC
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-D--EDCEKLLRAERIMARGGRRFGADAK 324 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~l~~~gI~~~pg~~f~~~~~ 324 (360)
.++.++.++++++.|++++.......... ..+..+.+.+++ . ..+...|+++||.+++|... .+
T Consensus 290 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~----------rs~~iv~f~~~~~~~~~~~~~~L~~~gI~~~~g~~~---~~ 356 (386)
T 3qm2_A 290 HKINQQKAELLYGVIDNSDFYRNDVAQAN----------RSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRV---VG 356 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEECCBCGGG----------BCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTT---TC
T ss_pred HHHHHHHHHHHHHHHHHCCCcccCCCHHH----------cCceEEEEECCCccccHHHHHHHHHCCCEEeCCCCC---cC
Confidence 99999999999999998843222111100 111234455553 1 45566688999999887533 24
Q ss_pred eEEEEecC--ChHHHHHHHHHHHHHHhch
Q 018172 325 YARVSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 325 ~~R~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
.+|+|+.. ++||+++++++|+++.++.
T Consensus 357 ~iRiS~~~~~t~edId~l~~~l~~~~~~~ 385 (386)
T 3qm2_A 357 GMRASIYNAMPIEGVKALTDFMIDFERRH 385 (386)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 59999966 8999999999999998753
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-19 Score=169.60 Aligned_cols=291 Identities=12% Similarity=0.016 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHh-hcCCCCC------CCCcEEEcCChHHHHHHHHHhhcCC--------CC-------CCCceEEEeCCC
Q 018172 39 PELAEAINNLHH-VVDNAVS------DGRHIVIGTGSTQLYQAALYALSSP--------GG-------PEPISVVSAAPY 96 (360)
Q Consensus 39 ~~lr~~la~~~~-~~~~~~~------~~~~i~~t~G~t~~l~~~~~~l~~~--------gd-------~~~~~vl~~~p~ 96 (360)
.++++++.+++. ..|.+.. .....++|+|+|+++..++....+. |+ ..+..|+++.++
T Consensus 112 ~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~ 191 (475)
T 3k40_A 112 TELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQA 191 (475)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTS
T ss_pred HHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCc
Confidence 789998877653 3344321 1126899999999988777765311 10 001239999999
Q ss_pred CCCcHHHHHHhCCeeeeecCCccccccC-------C------CeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEee
Q 018172 97 YSQYPAETDYLRSGLYKWDGDANTFDKN-------N------GAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDL 162 (360)
Q Consensus 97 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~------~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ 162 (360)
|.++...+...|++++.++.|.++++.+ + .+++|+++.++|+||.+-+ +++.++|+++|+++++|+
T Consensus 192 H~s~~~~~~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~ 271 (475)
T 3k40_A 192 HSSVERAGLLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDA 271 (475)
T ss_dssp CHHHHHHHHHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEEC
T ss_pred hHHHHHHHHHcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeH
Confidence 9999999999999999999865543221 1 2678899999999999977 778889999999999999
Q ss_pred cccCCCC-----Cc-CCCCCCccEEEeccccccCCCCceEEEEeecCHHHH-HHHHHHHhhc--------------c--c
Q 018172 163 AYYWPQY-----TP-ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVA-RKMTRFIELG--------------S--I 219 (360)
Q Consensus 163 ay~~~~~-----~~-~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~-~~l~~~~~~~--------------~--~ 219 (360)
+|+.... .. +.+....+.+..|+||.++ ....+|+++.++++.. +.+.....+. + .
T Consensus 272 A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~-~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 350 (475)
T 3k40_A 272 AYAGSAFICPEYRHLMKGIESADSFNFNPHKWML-VNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPL 350 (475)
T ss_dssp TTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSS-CCSSCEEEEESSGGGC---------------------------CC
T ss_pred HhHHHHHhCHhhHHHhcCcccCCEEEECchhccC-CCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccC
Confidence 9985321 11 1122245788999999776 3355788877665442 2221100000 0 0
Q ss_pred c--CChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC
Q 018172 220 G--VSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297 (360)
Q Consensus 220 ~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
+ .....+.++...+. ...+++..++..++.+++.+.|++++++.+..+... +.++++++
T Consensus 351 sr~~~~l~l~~al~~~g------~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~-------------~iv~f~~~ 411 (475)
T 3k40_A 351 GRRFRALKLWFVLRLYG------VENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINM-------------GLVCFRLK 411 (475)
T ss_dssp CGGGTHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBT-------------TEEEEEES
T ss_pred CCcccHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCce-------------EEEEEEeC
Confidence 0 11222333333222 266788889999999999999999988777654322 24455543
Q ss_pred c----hHHHHHHHHhhCe-eeeCCCCCCCCCCeEEEEecC---ChHHHHHHHHHHHHHHhch
Q 018172 298 E----DEDCEKLLRAERI-MARGGRRFGADAKYARVSMLS---REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 298 ~----~~~~~~~l~~~gI-~~~pg~~f~~~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~ 351 (360)
. ...+.+.|.++|+ .+.|+..++ ..++|++++. +++++++++++|++++++.
T Consensus 412 ~~~~~~~~l~~~L~~~g~~~~~~~~~~g--~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~ 471 (475)
T 3k40_A 412 GSNERNEALLKRINGRGHIHLVPAKIKD--VYFLRMAICSRFTQSEDMEYSWKEVSAAADEM 471 (475)
T ss_dssp SCHHHHHHHHHHHHHHTSCBCEEEEETT--EEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCcEEEEeeEECC--EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2 1556666777765 455544443 5689999864 7899999999999998764
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=171.20 Aligned_cols=289 Identities=12% Similarity=0.028 Sum_probs=184.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
+.++++.+|+++|. ++.+++++|++.++..++.+++++||. |+++.++|.++...+.+.|++++.++.+
T Consensus 197 i~eaE~~lA~~fGa-------~~a~~v~nGts~An~~ai~al~~pGD~----VLv~r~~H~S~~~~l~lsGa~pv~v~~~ 265 (715)
T 3n75_A 197 HKEAEQYIARVFNA-------DRSYMVTNGTSTANKIVGMYSAPAGST----ILIDRNCHKSLTHLMMMSDVTPIYFRPT 265 (715)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEESSHHHHHHHHHHHHHCCTTCE----EEEESSCCHHHHHHHHHSCCEEEEECCC
T ss_pred HHHHHHHHHHHhCC-------CCceEECcHHHHHHHHHHHHhCCCCCE----EEECCCccHHHHHHHHHcCCEEEEEecc
Confidence 59999999999995 457888999999999999999999998 9999999999999999999999988754
Q ss_pred cccc----------------cc----CCCee---EEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-----
Q 018172 118 ANTF----------------DK----NNGAY---IEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ----- 168 (360)
Q Consensus 118 ~~~~----------------~~----~~~~~---~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~----- 168 (360)
.+.+ +. .+++| ++++++| ||+|.+++ +.+.++|+++ .+++|+||+...
T Consensus 266 ~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~--~livDEAH~~~~~f~~~ 342 (715)
T 3n75_A 266 RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK--SIHFDSAWVPYTNFSPI 342 (715)
T ss_dssp BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCS--EEEEECTTCTTGGGSGG
T ss_pred ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcC--cEEEccccccccccCCc
Confidence 3211 11 23444 8999999 89999998 6777888755 378999998421
Q ss_pred CCcCCCC-----CCcc-EEEeccccccCCCCc-eEEEEeecCHHHHHHHHHHHhh-ccccCChHHHHHHHHHhcccCCCc
Q 018172 169 YTPITGA-----ADHD-IMLFTLSKCTGHAGS-RIGWALVKDTEVARKMTRFIEL-GSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 169 ~~~~~~~-----~~~~-i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
.+..... .+.+ ++++|+||+++ |+ ..|++++++.-..+.+...... .+.+++.+...++.++++.+..
T Consensus 343 ~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~-- 418 (715)
T 3n75_A 343 YEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKG-- 418 (715)
T ss_dssp GTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSH--
T ss_pred cccccccccCcCCCEEEEEEeccccccc--CCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHh--
Confidence 1111111 1222 45999999976 33 3588887443122233333332 3445556655555555654431
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCC------cccCCCCC-------------ccccccccc---CCCCCCcccccCCc
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGV------FGLPEYPL-------------EYCNFTGKF---TNSHPGFAWLESKE 298 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~~~~-------------~~~~~~~~~---~~~~~~~~~~~~~~ 298 (360)
...++.++++.++.+++++.|+++++ +.+..+.. .+..|.... ..-++.=+.+.+++
T Consensus 419 -~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~ 497 (715)
T 3n75_A 419 -NAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPG 497 (715)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSC
T ss_pred -hccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCC
Confidence 24455677777777888888777642 22222210 000000000 00000002222221
Q ss_pred -------------hHHHHHHHHhhCeeeeCCCCCCCCCCeEE--EEecCChHHHHHHHHHHHHHHhc
Q 018172 299 -------------DEDCEKLLRAERIMARGGRRFGADAKYAR--VSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 299 -------------~~~~~~~l~~~gI~~~pg~~f~~~~~~~R--~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
+..+.+.|+++||.+.-.. ..++= +|++.+++++++++++|.++.+.
T Consensus 498 ~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d-----~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~ 559 (715)
T 3n75_A 498 MEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG-----PYNLLFLFSIGIDKTKALSLLRALTDFKRA 559 (715)
T ss_dssp BCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE-----TTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccCCCcHHHHHHHHHHCCCEEEecC-----CCcEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 1578888999999876432 22333 34444899999999999988754
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=163.14 Aligned_cols=209 Identities=11% Similarity=0.038 Sum_probs=148.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEE---EcCChHHHHHHHHHhhcCCCCCCCceEEEeC-CCCCCcHHHH---------
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIV---IGTGSTQLYQAALYALSSPGGPEPISVVSAA-PYYSQYPAET--------- 104 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~---~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~-p~~~~~~~~~--------- 104 (360)
..++++.++++++. + ...+ ++ |+++++..++.+++++||+ |++++ |.|..+...+
T Consensus 67 ~~~l~~~la~~~g~------~-~~~~~i~~~-sGt~Ai~~al~al~~~Gd~----Vl~~~~~~y~~~~~~~~l~g~~~~~ 134 (431)
T 3ht4_A 67 RDTLEKVYADVFGA------E-AGLVRPQII-SGTHAISTALFGILRPGDE----LLYITGKPYDTLEEIVGVRGKGVGS 134 (431)
T ss_dssp HHHHHHHHHHHTTC------S-EECCBTTSC-SHHHHHHHHHHTTCCTTCE----EEECSSSCCTTHHHHTTSSSCSSSC
T ss_pred HHHHHHHHHHHhCC------C-cccccceee-CHHHHHHHHHHHhCCCCCE----EEEeCCCCchhHHHHHhhcccccch
Confidence 37888888888884 2 2222 45 6689999999999999998 99998 9999988655
Q ss_pred -HHhCCeeeeecCCcc------cccc--CCCeeEEEEc-CCCCCCcccch----HHHHHHhhh--cCcEEEEeecccCCC
Q 018172 105 -DYLRSGLYKWDGDAN------TFDK--NNGAYIEVVN-SPNNPDGTIRE----AVLAKVNRS--AEGKLIHDLAYYWPQ 168 (360)
Q Consensus 105 -~~~g~~~~~~~~~~~------~~~~--~~~~~~i~~~-~p~NPtG~~~~----~~~~~~~~~--~~~~li~D~ay~~~~ 168 (360)
+..|++++.++.+.+ .+.. ++++++|+++ +||||+|...+ +.+.++|++ +|+++++|++|..+.
T Consensus 135 ~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~ 214 (431)
T 3ht4_A 135 FKEYNIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFI 214 (431)
T ss_dssp SGGGTCEEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTS
T ss_pred HHHcCCEEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhc
Confidence 447999999887533 2221 4689999998 58999998876 466788998 999999999998654
Q ss_pred CCcCCCCCCccEEEeccccccCC-CCceEEEEeecCHHHHHHHHHHHhhcccc----CChHHHHHHHHHhcccCCCchhH
Q 018172 169 YTPITGAADHDIMLFTLSKCTGH-AGSRIGWALVKDTEVARKMTRFIELGSIG----VSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 169 ~~~~~~~~~~~i~~~S~sK~~~~-~G~r~G~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
....+...+.+++++|+||.+|. .+...||+++ ++++++.+.......+.+ .+...+.++...+ ..
T Consensus 215 ~~~~~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~-~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l--------~~ 285 (431)
T 3ht4_A 215 EEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVG-KEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGF--------FL 285 (431)
T ss_dssp SSCCGGGTTCSEEEEETTSGGGTTTCSSCEEEEE-CHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHH--------HH
T ss_pred cCCCccccCCeEEEcCccccCCCCCCCceEEEEe-cHHHHHHHHHHhccCCcccccCccHHHHHHHHhHh--------hh
Confidence 32222334568999999999652 1123399998 899999998755432222 1111122222222 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
+....++..++.+++.+.|++++.
T Consensus 286 ~~~~~~~~~~~a~~l~~~L~~~g~ 309 (431)
T 3ht4_A 286 APHVAGQALKGAIFTAAFLEKLGM 309 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcC
Confidence 455667778888899999998864
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=166.71 Aligned_cols=274 Identities=13% Similarity=0.082 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc--------C-----------------CC---CCCCceE
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS--------S-----------------PG---GPEPISV 90 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~--------~-----------------~g---d~~~~~v 90 (360)
.++++++++.+...- +. ..++|++++|+++++..+++.+. . +| +. |
T Consensus 109 ~~l~~~la~~l~~~~-~~-~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~----i 182 (472)
T 1ohv_A 109 ENFVEKLRESLLSVA-PK-GMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYS----I 182 (472)
T ss_dssp TTHHHHHHHTGGGGC-CT-TCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCE----E
T ss_pred HHHHHHHHHHHHHhC-CC-CcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCe----E
Confidence 678888877433211 11 23589999999999999998873 1 34 44 9
Q ss_pred EEeCCCCCCcHHHHH-HhCCee-------------eeecC------------------Ccccccc--CC------CeeEE
Q 018172 91 VSAAPYYSQYPAETD-YLRSGL-------------YKWDG------------------DANTFDK--NN------GAYIE 130 (360)
Q Consensus 91 l~~~p~~~~~~~~~~-~~g~~~-------------~~~~~------------------~~~~~~~--~~------~~~~i 130 (360)
+..+++|..+...+. ..|.+. ..++. |.+.++. ++ ++++|
T Consensus 183 i~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 262 (472)
T 1ohv_A 183 LSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGI 262 (472)
T ss_dssp EEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 999999998876553 323211 12211 0111111 12 68888
Q ss_pred EEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCC-cC--CCCCCcc--EEEeccccccCCCCceEEEEe
Q 018172 131 VVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYT-PI--TGAADHD--IMLFTLSKCTGHAGSRIGWAL 200 (360)
Q Consensus 131 ~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~-~~--~~~~~~~--i~~~S~sK~~~~~G~r~G~~~ 200 (360)
++...+|+||.+.+ +.+.++|+++|+++|+||+|.+.... .. ....+.. .-+.||||.+ +.| ||++
T Consensus 263 ive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~-l~G---G~~~ 338 (472)
T 1ohv_A 263 IVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKM-MTG---GFFH 338 (472)
T ss_dssp EECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGG-SSE---EEEE
T ss_pred EEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEcccc-ccC---CccC
Confidence 88777888998654 56778999999999999999842221 11 1111211 2345899995 345 7765
Q ss_pred ecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc----CC-cccCCCCC
Q 018172 201 VKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS----GV-FGLPEYPL 275 (360)
Q Consensus 201 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~-~~~~~~~~ 275 (360)
++++. .+.......+++.|++++.++.++|+.+.+ +...++++++++++.+.|+++ +. +...
T Consensus 339 --~~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~~~~~------~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~---- 405 (472)
T 1ohv_A 339 --KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVINIIKR------EDLLSNAAHAGKVLLTGLLDLQARYPQFISRV---- 405 (472)
T ss_dssp --CGGGS-CSSSSSSCCSSSSCHHHHHHHHHHHHHHHH------TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEE----
T ss_pred --chhhc-ccccccccCccCccHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEee----
Confidence 34432 222233345667899999999888875432 235667777777777777665 21 1101
Q ss_pred cccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEec--CChHHHHHHHHHHHHHHhc
Q 018172 276 EYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSML--SREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~~~ 350 (360)
.+.+.|+++++++. ..+.+.|.++||.+.|+. .+++||+++ .++|++++++++|.+++.+
T Consensus 406 ----------~~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g-----~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 406 ----------RGRGTFCSFDTPDESIRNKLISIARNKGVMLGGCG-----DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp ----------EEETTEEEEECSSHHHHHHHHHHHHHTTEECEEET-----TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ----------cCCceEEEEEeCChhHHHHHHHHHHHCCeEEecCC-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 12344667776542 556667778999999852 569999664 3999999999999999865
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-15 Score=140.87 Aligned_cols=279 Identities=14% Similarity=0.005 Sum_probs=167.9
Q ss_pred CCcEEEcCChHHHHHHHHHhhcCC-CCCCCceEEEeCCCCCCcHHHHHHh------CCeeeeecCC-ccccc----c-CC
Q 018172 59 GRHIVIGTGSTQLYQAALYALSSP-GGPEPISVVSAAPYYSQYPAETDYL------RSGLYKWDGD-ANTFD----K-NN 125 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~l~~~-gd~~~~~vl~~~p~~~~~~~~~~~~------g~~~~~~~~~-~~~~~----~-~~ 125 (360)
.+.+.++++++++...+++....- |.. +|+..+.+|......+-.. ......++.+ .+.++ . .+
T Consensus 143 ~~~v~f~~SGsEA~e~AiklAr~~tgr~---~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~~~l~~~l~~~~~ 219 (454)
T 4ao9_A 143 IEQLRFTNSGTEANLMALTAALHFTGRR---KIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDAQTARAQIERHGP 219 (454)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHTCC---EEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCHHHHHHHHHHTGG
T ss_pred CCEEEEeCchHHHHHHHHHHHHhcccCC---eEEEEeCCcCCccccccccccCccCCCCcccCCCchHHHHHHHHhhcCC
Confidence 458999999999999998877421 222 3888777777643322111 1122222211 11211 1 24
Q ss_pred CeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCcCC--C--CCCccEEEeccccccCCCCceE
Q 018172 126 GAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTPIT--G--AADHDIMLFTLSKCTGHAGSRI 196 (360)
Q Consensus 126 ~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~~~--~--~~~~~i~~~S~sK~~~~~G~r~ 196 (360)
++.+|++.......|.+.+ +.+.++|+++|+++|.||++.+ ...... . .-..+ +.+++|.+| .|+.+
T Consensus 220 ~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~G~~~a~e~~gv~PD--i~t~gK~lg-gG~Pi 295 (454)
T 4ao9_A 220 EIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RLAPHGLANKLGIRSD--LTTLGKYIG-GGMSF 295 (454)
T ss_dssp GEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GGSTTCHHHHHTCCCS--EEEEEGGGG-TTSSC
T ss_pred ceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CCccccchhccCCCCc--EEEeccccC-CCCcc
Confidence 5667777655666888765 4677899999999999999873 111110 0 11123 347789998 88999
Q ss_pred EEEeecCHHHHHHHHHH----HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCC
Q 018172 197 GWALVKDTEVARKMTRF----IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPE 272 (360)
Q Consensus 197 G~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 272 (360)
|.+++ ..++++.+... ....+++.|+++..++.+.|+.+.+. +..++..+.-...++.|.+.+.+++.+.-..
T Consensus 296 ga~~~-~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~--~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vr 372 (454)
T 4ao9_A 296 GAFGG-RADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTP--EAAGALAERGEALRARLNALCANEGVAMQFT 372 (454)
T ss_dssp EEEEE-CHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCH--HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEE
T ss_pred eeeee-HHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhcc--ChhHHHHHHHHHHHHHHHHHHhhCCCCEEEe
Confidence 99998 89998887532 13356788999999999999877653 5555555444444455555545554322122
Q ss_pred CCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 273 YPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
-.|.+..+.- ......++-.+...+. ..+...|.++||++.|. +++.++...++|++|++++++++++.
T Consensus 373 g~G~m~gi~f-~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~-------~~~~~s~~~T~~dId~~l~al~~~l~ 444 (454)
T 4ao9_A 373 GIGSLMNAHF-VQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPR-------GFVVLSLPLTDADIDRYVAAIGSFIG 444 (454)
T ss_dssp EETTEEEEES-CCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTT-------CEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred eeceEEEEEE-ecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCC-------CCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 2222211100 0000011111111122 44566778899999873 34556665699999999999999998
Q ss_pred chhccC
Q 018172 350 GSISNG 355 (360)
Q Consensus 350 ~~~~~~ 355 (360)
+....+
T Consensus 445 ~~~a~l 450 (454)
T 4ao9_A 445 GHGALL 450 (454)
T ss_dssp HSGGGS
T ss_pred hccccC
Confidence 865433
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-13 Score=126.48 Aligned_cols=269 Identities=12% Similarity=0.048 Sum_probs=168.1
Q ss_pred CCcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CC-------------eeeeecCCc-----
Q 018172 59 GRHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RS-------------GLYKWDGDA----- 118 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~----- 118 (360)
.+.+++++++++++..+++.... .|.. +|+.-+.+|......+-.. +- .+..+|...
T Consensus 125 ~~~v~f~~sGsEA~e~AlklAr~~t~r~---~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~ 201 (456)
T 4atq_A 125 AKRTVLFNSGAEAVENAVKVARLATGRD---AVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREE 201 (456)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHCCC---EEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCS
T ss_pred CcEEEEeCChHHHHHHHHHHHhhhhcCC---eEEEEecccCCccccccccccCccccccCCCCccccceecccccccccC
Confidence 34789999999999999887632 1222 4888888888765443322 21 112222110
Q ss_pred ----cccc-------------cCCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcCC--
Q 018172 119 ----NTFD-------------KNNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPIT-- 173 (360)
Q Consensus 119 ----~~~~-------------~~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~~-- 173 (360)
+..+ ...+..++++.--..-.|.+.+ +.+.++|+++|+++|.||++.+. ......
T Consensus 202 ~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~ 281 (456)
T 4atq_A 202 NPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAV 281 (456)
T ss_dssp STTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG
T ss_pred CCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccc
Confidence 0000 0124556666544555777754 57889999999999999999852 222221
Q ss_pred CC--CCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 174 GA--ADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 174 ~~--~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
.. ..-|+ -+++|.+| .|+.+|.+++ ..++.+.+.......+++.|+.+..++.+.|+.+.+. ...++.++.=
T Consensus 282 e~~gv~PDi--vt~gK~lg-gg~P~~av~~-~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~--~l~~~~~~~g 355 (456)
T 4atq_A 282 DHEGVVPDI--ITMAKGIA-GGLPLSAITG-RADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQH--DLNGRARHIE 355 (456)
T ss_dssp GGTTCCCSE--EEECGGGG-TTSSCEEEEE-EHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHT--THHHHHHHHH
T ss_pred cccCCCCch--hhhhhccc-CcCCceeeEe-cHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhc--cHHHHHHHHH
Confidence 11 12343 45679998 8999999998 7888888876666678899999999999999876543 4444444443
Q ss_pred HHHHHHHHHHHHhcCCc--ccCCCCCcccccccccCCCCCCcccccCC-------ch---HHHHHHHHhhCeeeeCCCCC
Q 018172 252 SERWNMLRQVIRQSGVF--GLPEYPLEYCNFTGKFTNSHPGFAWLESK-------ED---EDCEKLLRAERIMARGGRRF 319 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~l~~~gI~~~pg~~f 319 (360)
...++.|.+...+++.. .+.. .+++.+.++.+++. +. ..+...+.++|+.+.++..+
T Consensus 356 ~~l~~~L~~l~~~~~~~~~~~v~-----------~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~ 424 (456)
T 4atq_A 356 ELALGKLRELAAELSAGGGSVVG-----------DIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCGTY 424 (456)
T ss_dssp HHHHHHHHHHHHHCC-----CEE-----------EEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEECTT
T ss_pred HHHHHHHHHHHHhcccccCCceE-----------EeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecCCC
Confidence 33344444444443210 0000 11233334444331 11 55777888999999874322
Q ss_pred CCCCCeEEEEe--cCChHHHHHHHHHHHHHHhc
Q 018172 320 GADAKYARVSM--LSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 320 ~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~ 350 (360)
.+.+||.. ..++|++++++++|.+.++.
T Consensus 425 ---~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 425 ---GNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp ---SCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 45899974 34999999999999999864
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-12 Score=120.71 Aligned_cols=293 Identities=9% Similarity=0.005 Sum_probs=178.5
Q ss_pred HHHHHHHH-HHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCC---C-CCCCceEEEeCCCCCCcHHHHHHhCCeeee
Q 018172 39 PELAEAIN-NLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSP---G-GPEPISVVSAAPYYSQYPAETDYLRSGLYK 113 (360)
Q Consensus 39 ~~lr~~la-~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~---g-d~~~~~vl~~~p~~~~~~~~~~~~g~~~~~ 113 (360)
..|-+.++ +|+...|.+.. ...++++|+|.++..++.+.+++ | +. ||+|..+|.+....+.+.|++++.
T Consensus 115 ~~ltn~l~ld~L~~~G~~~~--~~~flVnGsTgg~lamilaa~r~~rpg~d~----VIvpRn~HKSv~kAliL~Gl~Pv~ 188 (501)
T 3hl2_A 115 NKITNSLVLDIIKLAGVHTV--ANCFVVPMATGMSLTLCFLTLRHKRPKAKY----IIWPRIDQKSCFKSMITAGFEPVV 188 (501)
T ss_dssp HHHHHHHHHHHHHHTTCTTC--CEEEEESSCHHHHHHHHHHHHHHHCTTCCE----EEEECCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCC--CcEEEECcHHHHHHHHHHHHcCcccCCCCE----EEEecchHHHHHHHHHHcCCeEEE
Confidence 45555555 57776677643 35899999998877777777654 3 66 999999999999999999999998
Q ss_pred ecCC--cccccc------------CCCeeEEEEcCCCCCCccc-ch-HHHHHHhhhcCcEEEEeecccCCC-C-CcCC--
Q 018172 114 WDGD--ANTFDK------------NNGAYIEVVNSPNNPDGTI-RE-AVLAKVNRSAEGKLIHDLAYYWPQ-Y-TPIT-- 173 (360)
Q Consensus 114 ~~~~--~~~~~~------------~~~~~~i~~~~p~NPtG~~-~~-~~~~~~~~~~~~~li~D~ay~~~~-~-~~~~-- 173 (360)
++.. .+.+.. ..+..++++++|++.-|.+ -+ +++.++|+++|+++++|+||+... + ..++
T Consensus 189 V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~s 268 (501)
T 3hl2_A 189 IENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ 268 (501)
T ss_dssp ECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHH
T ss_pred EeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHH
Confidence 7642 111111 1245555555554433444 44 788899999999999999998421 1 1111
Q ss_pred -CCCC-ccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 174 -GAAD-HDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 174 -~~~~-~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
-..+ .++++.|.+|.+-++ ...|.+...++++++.+..... +.....++......++..- .+.+.+..++.
T Consensus 269 A~~~GrAD~vVqS~HK~llvp-IGG~ii~~~d~e~l~~~~~~yP--Gr~S~Spsldl~~tLL~lG----r~Gy~~ll~e~ 341 (501)
T 3hl2_A 269 GARVGRIDAFVQSLDKNFMVP-VGGAIIAGFNDSFIQEISKMYP--GRASASPSLDVLITLLSLG----SNGYKKLLKER 341 (501)
T ss_dssp HHHHSCCCEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHHTSC--SCBCSHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHhcCCCcEEEecccccceee-cCceEEEeCCHHHHHHHHHhCC--CCCCCcHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 1233 789999999987544 3334554667888887744321 1112333332333333321 25567777777
Q ss_pred HHHHHHHHHHHHhcCC---cccCCCCCcccccccccCCCCCCcccccCC---c---hHHHHHHHHhhCee----eeCCC-
Q 018172 252 SERWNMLRQVIRQSGV---FGLPEYPLEYCNFTGKFTNSHPGFAWLESK---E---DEDCEKLLRAERIM----ARGGR- 317 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~l~~~gI~----~~pg~- 317 (360)
.++.+++.+.|+++.. ..+...+.- +.+.-+.++.. . ...+-..|-.++|. |.+|.
T Consensus 342 ~ela~~L~~~L~~la~~~ge~ll~~~~n----------~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~ 411 (501)
T 3hl2_A 342 KEMFSYLSNQIKKLSEAYNERLLHTPHN----------PISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSM 411 (501)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCBCCCTTC----------SSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCC
T ss_pred HHHHHHHHHHHHHHHHhcChhhcCCCCC----------ceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCc
Confidence 7888888888877632 222211100 00001111111 1 14555566666553 34454
Q ss_pred ---------CCCC-----CCCeEEEEecC--ChHHHHHHHHHHHHHHhchhcc
Q 018172 318 ---------RFGA-----DAKYARVSMLS--REEIFNIFLERLSAIQGGSISN 354 (360)
Q Consensus 318 ---------~f~~-----~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~~~ 354 (360)
.||. ...|+-+.-+. +++|++.++++|.+.+.+.++.
T Consensus 412 ~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~ 464 (501)
T 3hl2_A 412 QTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE 464 (501)
T ss_dssp EEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred eEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4442 34577776544 9999999999999999876543
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-11 Score=117.60 Aligned_cols=262 Identities=12% Similarity=0.081 Sum_probs=162.7
Q ss_pred CcEEEcCChHHHHHHHHHhhc----CCCCCCCceEEEeCCCCCCcHHHHHHh-CCe-----------eeeecCC------
Q 018172 60 RHIVIGTGSTQLYQAALYALS----SPGGPEPISVVSAAPYYSQYPAETDYL-RSG-----------LYKWDGD------ 117 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~----~~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~-----------~~~~~~~------ 117 (360)
+.|.+++++++++..+++... ..|.+...+|+.-..+|......+-.. |-. ...++.+
T Consensus 129 ~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~ 208 (473)
T 4e3q_A 129 GRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYG 208 (473)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHS
T ss_pred cEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccc
Confidence 479999999999999988753 223333345888888887755433322 211 1111111
Q ss_pred -ccc------------ccc------CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcC
Q 018172 118 -ANT------------FDK------NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPI 172 (360)
Q Consensus 118 -~~~------------~~~------~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~ 172 (360)
... ++. ..+..+|++.-...-.|.+.+ +.++++|+++|+++|.||++.+. .....
T Consensus 209 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~ 288 (473)
T 4e3q_A 209 EEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT 288 (473)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSS
T ss_pred cccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccch
Confidence 000 000 123445565554556777755 57889999999999999999853 22222
Q ss_pred C----CCCCccEEEeccccccCCCC-ceEEEEeecCHHHHHHHHHHH-------hhccccCChHHHHHHHHHhcccCCCc
Q 018172 173 T----GAADHDIMLFTLSKCTGHAG-SRIGWALVKDTEVARKMTRFI-------ELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 173 ~----~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
. ..-.-+ +.+++|.++ .| +.+|.+++ .+++.+.+.... ...+++.|+++..++.+.|+.+.+.
T Consensus 289 fa~e~~gv~PD--i~t~~K~l~-gG~~Pl~av~~-~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~- 363 (473)
T 4e3q_A 289 WGCVTYDFTPD--AIISSKNLT-AGFFPMGAVIL-GPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNE- 363 (473)
T ss_dssp CHHHHTTCCCS--EEEECGGGG-TTSSCCEEEEE-CHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHS-
T ss_pred hHHHhcCCCCC--hHHhccccc-CCCCCcccccc-cHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccc-
Confidence 1 111223 336679998 66 89999998 899998886532 2356788999999999988866543
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc---CCcccCCCCCcccccccccCCCCCCcccccC----------Cc----hHHHH
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQS---GVFGLPEYPLEYCNFTGKFTNSHPGFAWLES----------KE----DEDCE 303 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~----~~~~~ 303 (360)
..+++.+ +.-+++.+.|+++ +.+. .. ++.+.++-+.+ +. ...+.
T Consensus 364 -~l~~~~~----~~g~~l~~~L~~l~~~~~v~--~v------------RG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~ 424 (473)
T 4e3q_A 364 -GLAENVR----RLAPRFEERLKHIAERPNIG--EY------------RGIGFMWALEAVKDKASKTPFDGNLSVSERIA 424 (473)
T ss_dssp -SHHHHHH----HHHHHHHHHHHHHTTSTTEE--EE------------EEETTEEEEEECSBTTTTBCCCGGGCHHHHHH
T ss_pred -cHHHHHH----HHHHHHHHHHHHHhcCCCee--EE------------eecceEEEEEEecCccccccccccHHHHHHHH
Confidence 4444443 3444455555444 2211 11 12222222221 11 15677
Q ss_pred HHHHhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHHhch
Q 018172 304 KLLRAERIMARGGRRFGADAKYARVSM--LSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 304 ~~l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~~ 351 (360)
..+.++|+.++|. .+.+||+. ..++++++++++++.+.+++.
T Consensus 425 ~~~~~~Gll~~~~------g~~i~l~PPL~it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 425 NTCTDLGLICRPL------GQSVVLCPPFILTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp HHHHHTTEECEEE------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEEec------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8888999999873 24788864 449999999999999998764
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=131.93 Aligned_cols=200 Identities=17% Similarity=0.063 Sum_probs=129.0
Q ss_pred CeeEEEEcCC-CCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcCCC----CCCccEEEeccccccCCCC-
Q 018172 126 GAYIEVVNSP-NNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPITG----AADHDIMLFTLSKCTGHAG- 193 (360)
Q Consensus 126 ~~~~i~~~~p-~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~~~----~~~~~i~~~S~sK~~~~~G- 193 (360)
++.+|++..- ++..|...+ +.+.++|++||+++|+||++.+. ....... ....+ +.+++|.++ .|
T Consensus 594 ~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PD--iitlsK~L~-gG~ 670 (831)
T 4a0g_A 594 HVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPD--IACFAKLLT-GGM 670 (831)
T ss_dssp EEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCS--EEEECGGGG-TTS
T ss_pred cEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCc--EEEEecccc-cCc
Confidence 3445555543 688888764 46778999999999999999842 2111111 11123 347999998 67
Q ss_pred ceEEEEeecCHHHHHHHHHH------HhhccccCChHHHHHHHHHhcccCCCchhHHHHHH---HHHHH-HHHHHHHHHH
Q 018172 194 SRIGWALVKDTEVARKMTRF------IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGR---RLMSE-RWNMLRQVIR 263 (360)
Q Consensus 194 ~r~G~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~-~~~~l~~~l~ 263 (360)
+++|++++ ++++++.+... ....+++.|++++.++.++|+.+.+. ...++.+ +.+++ .++.+.+.+.
T Consensus 671 ~Plgav~~-~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~--~l~~~~~~~~~~l~~~l~~~l~~~l~ 747 (831)
T 4a0g_A 671 VPLAVTLA-TDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDP--ETNHNITSQGKTLRELWDEELVQQIS 747 (831)
T ss_dssp SCCEEEEE-CHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCT--TTCTTBCTTSSBBCCCSCHHHHHHHH
T ss_pred cCcEEEEE-CHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999 89999888542 13356788999999999988865432 2222221 11111 1223445566
Q ss_pred hcCCcccCCCCCcccccccccCCCCCCcccccCCc-----------hHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe--
Q 018172 264 QSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----------DEDCEKLLRAERIMARGGRRFGADAKYARVSM-- 330 (360)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~-- 330 (360)
+++.+.-....|. ++.+.+.+ ...+.+.|.++||+++|+ .+.+||+.
T Consensus 748 ~~~~v~~vrg~Gl--------------~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~------g~~lrl~pp~ 807 (831)
T 4a0g_A 748 SHSAVQRVVVIGT--------------LFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL------GNVIYLMCGP 807 (831)
T ss_dssp HSTTEEEEEEETT--------------EEEEEEC---------CHHHHHHHHHHHHTTEECCCB------TTEEEEECCT
T ss_pred hCCCceeEeeccc--------------EEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec------CCEEEEECCC
Confidence 6654333222232 33333321 145677788999999984 35899984
Q ss_pred cCChHHHHHHHHHHHHHHhch
Q 018172 331 LSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 331 ~~~~e~~~~~~~~l~~~~~~~ 351 (360)
..+++++++++++|.+++++.
T Consensus 808 ~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 808 CTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp TCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 449999999999999998754
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-10 Score=109.13 Aligned_cols=291 Identities=8% Similarity=-0.030 Sum_probs=166.7
Q ss_pred HHHHHHHHH-HhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCC----CCCCCceEEEeCCCCCCcHHHHHHhCCeeeee
Q 018172 40 ELAEAINNL-HHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSP----GGPEPISVVSAAPYYSQYPAETDYLRSGLYKW 114 (360)
Q Consensus 40 ~lr~~la~~-~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~----gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~ 114 (360)
.+.+.+..+ +...|.+ .....++++|+|.+...++...+++ ++. |+++..+|.+...++..+|++++.+
T Consensus 98 ~~e~~~~~~~~~~lGlp--~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~----viv~r~aHkSv~kAl~l~Gl~p~~v 171 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVH--SVASCFVVPMATGMSLTLCFLTLRHKRPKAKY----IIWPRIDQKSCFKSMVTAGFEPVVI 171 (450)
T ss_dssp HHHHHHHHHHHHHHTCT--TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCE----EEEECCCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCC--CCceEEEECCHHHHHHHHHHHHcchhhcCCCE----EEEECCcHHHHHHHHHHcCCeeEEE
Confidence 445555543 3333432 2335688888885555555554433 555 9999999999999999999998877
Q ss_pred cCC---------cccccc----CC-CeeEEEEcCCCC-CCcccch-HHHHHHhhhcCcEEEEeecccCCC--CCcCC-C-
Q 018172 115 DGD---------ANTFDK----NN-GAYIEVVNSPNN-PDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ--YTPIT-G- 174 (360)
Q Consensus 115 ~~~---------~~~~~~----~~-~~~~i~~~~p~N-PtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~--~~~~~-~- 174 (360)
+.. .+.++. ++ +.+++++.+|++ .+|.+-+ +.+.++|+++|+++++|+||+... ...++ .
T Consensus 172 ~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a 251 (450)
T 3bc8_A 172 ENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQG 251 (450)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH
T ss_pred EeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHH
Confidence 642 111111 12 355666666654 4566666 788889999999999999998421 11111 1
Q ss_pred C--CCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHH
Q 018172 175 A--ADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMS 252 (360)
Q Consensus 175 ~--~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 252 (360)
. ...+.++.|.+|.+. .....+++...+++..+.+..... ......++.......+. . . .+.+.+..+...
T Consensus 252 ~~~~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~~--g~~s~SpsL~l~~~l~~-~-G--~~g~~~~i~~~~ 324 (450)
T 3bc8_A 252 ARVGRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYP--GRASASPSLDVLITLLS-L-G--CSGYRKLLKERK 324 (450)
T ss_dssp HHHSCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSC--SCBCSHHHHHHHHHHHH-H-H--HHHHHHHHHHHH
T ss_pred hcccCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHhh--cCCcccHHHHHHHHHHH-H-H--HHHHHHHHHHHH
Confidence 1 356889999999776 444467776667887777754321 11223334333333232 1 1 144555555556
Q ss_pred HHHHHHHHHHHhcC---CcccCCCCCcccccccccCCCCCCcccccC-----C-chHHHHHHHHhhC---eeeeC-----
Q 018172 253 ERWNMLRQVIRQSG---VFGLPEYPLEYCNFTGKFTNSHPGFAWLES-----K-EDEDCEKLLRAER---IMARG----- 315 (360)
Q Consensus 253 ~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~l~~~g---I~~~p----- 315 (360)
++.+++.+.|++++ +..+...+.- +....+.++. . +...+.-.+...| ..+.+
T Consensus 325 ~~a~~l~~~l~~~~~~~g~~~l~~~~~----------~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~ 394 (450)
T 3bc8_A 325 EMFVYLSTQLKKLAEAHNERLLQTPHN----------PISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQ 394 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBCCCTTC----------SSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEE
T ss_pred HHHHHHHHHHHhhHHhcCceecCCccC----------CCcceeecccccccccCCCceeEEEecCCCCccceeeeccccc
Confidence 66777788777765 5544332110 0000111111 1 2233444444433 22321
Q ss_pred ---CC---CCC-----CCCCeEEEEecC--ChHHHHHHHHHHHHHHhchhc
Q 018172 316 ---GR---RFG-----ADAKYARVSMLS--REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 316 ---g~---~f~-----~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~~ 353 (360)
|. .|+ .+..++=+.++. +++++++++++|+++..+.++
T Consensus 395 ~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~ 445 (450)
T 3bc8_A 395 TVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 445 (450)
T ss_dssp EETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 11 122 134565555444 899999999999999876554
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-10 Score=105.37 Aligned_cols=258 Identities=13% Similarity=0.080 Sum_probs=162.0
Q ss_pred CChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH--------HHhC--CeeeeecCCcccccc----------CC
Q 018172 66 TGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET--------DYLR--SGLYKWDGDANTFDK----------NN 125 (360)
Q Consensus 66 ~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~--------~~~g--~~~~~~~~~~~~~~~----------~~ 125 (360)
.++++++..++.+|++|||+ |+..+..+.....-- ...| .+.+.+.+|.+.... ..
T Consensus 127 ~SGs~AN~avy~All~PGD~----ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~ 202 (490)
T 3ou5_A 127 YSGSPANLAVYTALLQPHDR----IMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLF 202 (490)
T ss_dssp SSHHHHHHHHHHHHCC-CCC----EECBC----------------------------CBCEETTTTEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCE----EEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhc
Confidence 35688889999999999999 998887766653221 1112 234444444332222 24
Q ss_pred CeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccC-----C-CCCcCCCCCCccEEEeccccccCCCCceEEEE
Q 018172 126 GAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYW-----P-QYTPITGAADHDIMLFTLSKCTGHAGSRIGWA 199 (360)
Q Consensus 126 ~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~-----~-~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~ 199 (360)
++|+|+...-.+|.=.- -+.++++|++-|.++++|.+|.. + ...|+. ..+++..|.+|+| +|=|.|.|
T Consensus 203 kPklIi~G~SaY~r~id-~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~---~ADvVTtTTHKTL--rGPrGG~I 276 (490)
T 3ou5_A 203 RPRLIIAGTSAYARLID-YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK---HADIVTTTTHKTL--RGARSGLI 276 (490)
T ss_dssp CCSEEEECCSSCCSCCC-HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG---TCSEEEEESSSTT--CSCSCEEE
T ss_pred CCCeEEECCccCccccC-HHHHHHHHhhcccEEEechhhhhhhhcccccCCccc---cceEEeccccccc--cCCCceEE
Confidence 88999876644432211 16788889999999999999972 2 233442 3689999999997 46677998
Q ss_pred eecCH--------------HHHHHHHHHHhhccccCChHHHHHHHH-HhcccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 018172 200 LVKDT--------------EVARKMTRFIELGSIGVSKESQLRAAK-ILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQ 264 (360)
Q Consensus 200 ~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (360)
.+.++ ++.+.+.+....+..+.+.+...++.+ ++..... .......+++.++.+.|.+.|.+
T Consensus 277 l~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~---p~fk~Ya~qVv~NAkaLA~~L~~ 353 (490)
T 3ou5_A 277 FYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACT---PMFREYSLQVLKNARAMADALLE 353 (490)
T ss_dssp EEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHHHHh
Confidence 87432 567778776655555555555555544 3442211 67788888889999999999998
Q ss_pred cCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeee----CCCCCCCCCCeEEEEec-----
Q 018172 265 SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMAR----GGRRFGADAKYARVSML----- 331 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~----pg~~f~~~~~~~R~s~~----- 331 (360)
.+ +.+.. |+ ...-.+++++.. +..+.++|.+.||.+. |+..-...+..+||+..
T Consensus 354 ~G-~~vvs--Gg----------TdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtR 420 (490)
T 3ou5_A 354 RG-YSLVS--GG----------TDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSR 420 (490)
T ss_dssp TT-CEEGG--GS----------CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHT
T ss_pred CC-Ceeec--CC----------CCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhC
Confidence 85 34331 11 011135666643 2889999999999875 44311123568999852
Q ss_pred -CChHHHHHHHHHHHHHHh
Q 018172 332 -SREEIFNIFLERLSAIQG 349 (360)
Q Consensus 332 -~~~e~~~~~~~~l~~~~~ 349 (360)
..++|+++..+.|.+++.
T Consensus 421 G~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 421 QFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 278999999998888774
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 360 | ||||
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 4e-97 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 9e-20 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 1e-19 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-14 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 2e-08 | |
| d2aeua1 | 366 | c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar | 1e-06 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 1e-06 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 7e-06 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 1e-05 | |
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 3e-05 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 8e-05 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 2e-04 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 3e-04 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 3e-04 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 4e-04 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 5e-04 |
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 293 bits (750), Expect = 4e-97
Identities = 125/361 (34%), Positives = 189/361 (52%), Gaps = 24/361 (6%)
Query: 3 FEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHI 62
E +W++ + +++S MSY + V F+ EL + I LH VV NA + R+I
Sbjct: 69 LEEYWKQHKEASAVLVSPWHRMSYFFN--PVSNFISFELEKTIKELHEVVGNAAAKDRYI 126
Query: 63 VIGTGSTQLYQAALYALSSPGGPEPI----SVVSAAPYYSQYPAETDYLRSGLYKWDGDA 118
V G G TQL + +LS P VV+ AP+Y + +T Y Y W G+A
Sbjct: 127 VFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNA 186
Query: 119 NTFDK--NNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAA 176
+ N YIE+V SPNNP+G +R AV+ K I+D+ YYWP YTPI A
Sbjct: 187 ANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKGC------KSIYDMVYYWPHYTPIKYKA 240
Query: 177 DHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIV 236
D DI+LFT+SK TGH+GSR GWAL+KD V + ++ + G +E+QLR+ K+L V
Sbjct: 241 DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEV 300
Query: 237 SDDYP-------NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPL-EYCNFTGKFTNSH 288
+ +G + + ERW + ++ QS F E P EYCN+ +
Sbjct: 301 VAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPS 360
Query: 289 PGFAWL--ESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSA 346
P +AW+ E +ED+DC + + RI + G F A ++Y R+S++ ++ F+ + L
Sbjct: 361 PSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKD 420
Query: 347 I 347
+
Sbjct: 421 M 421
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 87.1 bits (215), Expect = 9e-20
Identities = 59/337 (17%), Positives = 106/337 (31%), Gaps = 51/337 (15%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
P L EAI + +I++ G Q + A+ PG V+ AP++
Sbjct: 70 PRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGD----EVIIPAPFWV 125
Query: 99 QYPAETDYLRSGLYKWDGDANTFDKNNGAYIE----------VVNSPNNPDGT----IRE 144
YP T K + I V N+P+NP G
Sbjct: 126 SYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEV 185
Query: 145 AVLAKVNRSAEGKLIHDLAY-----YWPQYTPITGAA----DHDIMLFTLSKCTGHAGSR 195
+A+V A ++ D Y Q+ I A+ + ++ +K G R
Sbjct: 186 RAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWR 245
Query: 196 IGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERW 255
+G+ + + T+ + V +Q ++ + + +ER
Sbjct: 246 VGFLAGPV-PLVKAATKIQGHSTSNVCTFAQY----GAIAAYENSQDCVQEMLAAFAERR 300
Query: 256 NMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-----EDCEKLLRAER 310
+ + LE G F + + + + C +LL +
Sbjct: 301 RYMLDALNAMP-------GLECPKPDGAF------YMFPSIAKTGRSSLDFCSELLDQHQ 347
Query: 311 IMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAI 347
+ G FGAD R+S + + +ERL
Sbjct: 348 VATVPGAAFGAD-DCIRLSYATDLDTIKRGMERLEKF 383
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 87.1 bits (215), Expect = 1e-19
Identities = 62/332 (18%), Positives = 105/332 (31%), Gaps = 44/332 (13%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
PEL EA+ + ++ G +Q A+ PG V+ +PY+
Sbjct: 71 PELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGD----EVIVLSPYWV 126
Query: 99 QYPA----------ETDYLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTI-----R 143
YP E + L + D + VVNSPNNP G +
Sbjct: 127 SYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVL 186
Query: 144 EAVLAKVNRSA----EGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTGHAGSRIGWA 199
EA+ ++ L Y ++P A +H + + +K G RIG+A
Sbjct: 187 EALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYA 246
Query: 200 LVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLR 259
EV + M + +Q + L R +L
Sbjct: 247 CGPK-EVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLE 305
Query: 260 QVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLE----SKEDEDCEKLLRAERIMARG 315
L L+ +G F + ++ + ++ + L +
Sbjct: 306 G---------LTALGLKAVRPSGAF------YVLMDTSPIAPDEVRAAERLLEAGVAVVP 350
Query: 316 GRRFGADAKYARVSMLSREEIFNIFLERLSAI 347
G F A + R+S + EE LER + +
Sbjct: 351 GTDFAAF-GHVRLSYATSEENLRKALERFARV 381
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 71.0 bits (173), Expect = 3e-14
Identities = 51/341 (14%), Positives = 99/341 (29%), Gaps = 56/341 (16%)
Query: 39 PELAEAI-NNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYY 97
EL EAI L I++ G+ Q + L A G V+ P +
Sbjct: 65 LELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEE----VLIPTPAF 120
Query: 98 SQY----------PAETDYLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTI--REA 145
Y P E ++ + D + ++NSP NP G + ++
Sbjct: 121 VSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKD 180
Query: 146 V--LAKVNRSAEGKLIHDLAY--------YWPQYTPITGAADHDIMLFTLSKCTGHAGSR 195
+ +A + +I D Y + G + I + SK G R
Sbjct: 181 LEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWR 240
Query: 196 IGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERW 255
+G+ + R + + + F +Y +
Sbjct: 241 LGFVAAPSWIIERMVKFQM--------------------YNATCPVTFIQYAAAKALKDE 280
Query: 256 NMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPG---FAWLESKE-----DEDCEKLLR 307
+ V + + P + + ++ + E +L+
Sbjct: 281 RSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTGLTSKKFSELMLK 340
Query: 308 AERIMARGGRRFGADAK-YARVSMLSREEIFNIFLERLSAI 347
R+ G FG + Y R+S + E ++R+ +
Sbjct: 341 EARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERV 381
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 53.5 bits (127), Expect = 2e-08
Identities = 53/328 (16%), Positives = 95/328 (28%), Gaps = 42/328 (12%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGG------PEPISVVS 92
EL E I +V+ G+ Q A AL PG P +S +
Sbjct: 68 YELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIP 127
Query: 93 AAPYYSQYPAETDYLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTIREAV----LA 148
+ S ++ + ++NSPNNP G + L
Sbjct: 128 QIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLV 187
Query: 149 KVNRSAEGKLIHDLAYYWPQYTPIT-------GAADHDIMLFTLSKCTGHAGSRIGWALV 201
++ + +I D Y YT D + + SK G R+G+ +
Sbjct: 188 RLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLIS 247
Query: 202 KDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQV 261
+ S + + S F E ++ M +
Sbjct: 248 SEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGVKF 307
Query: 262 IRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED--EDCEKLLRAERIMARGGRRF 319
+ G F + + + + D + CE+LL +++ G F
Sbjct: 308 VEPEGAF----------------------YLFFKVRGDDVKFCERLLEEKKVALVPGSAF 345
Query: 320 GADAKYARVSMLSREEIFNIFLERLSAI 347
+ R+S + E L+R+
Sbjct: 346 LKPG-FVRLSFATSIERLTEALDRIEDF 372
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 47.2 bits (111), Expect = 1e-06
Identities = 35/306 (11%), Positives = 77/306 (25%), Gaps = 19/306 (6%)
Query: 37 LVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY 96
++ E +N V ++ A + AL I + P
Sbjct: 51 FAEKVNEYGLKHLGGDEND-----KCVGFNRTSSAILATILALKPKKV---IHYLPELPG 102
Query: 97 YSQYPAETDYLRSGLYKWDGDANTFDK-NNGAYIEVVNSPNNPDGTIREAV--LAKVNRS 153
+ + + ++ D +K + + + S + E + ++
Sbjct: 103 HPSIERSCKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKN 162
Query: 154 AEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTGHAGSRIGWALV-KDTEVARKMTR 212
E + D A + + T L+ E+ K+
Sbjct: 163 KEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYI 222
Query: 213 FIELGSIGVSKESQ---LRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFG 269
+ RA K + + FE + + L + ++ +
Sbjct: 223 EGTKFGLEAQPPLLAGIYRALKNFNL--ERIRKAFERAKNFDLSKIEKLNKELK--AIDD 278
Query: 270 LPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVS 329
E + K E LL+ I+ +K R+
Sbjct: 279 NINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRID 338
Query: 330 MLSREE 335
+ SR+
Sbjct: 339 LTSRDA 344
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 47.2 bits (111), Expect = 1e-06
Identities = 57/333 (17%), Positives = 96/333 (28%), Gaps = 40/333 (12%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
PEL +AI + + + T+ Q AL PG ++ P Y
Sbjct: 73 PELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDE----ILVPGPSYP 128
Query: 99 QYPA------------ETDYLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGT----- 141
Y T D A V +PNNP G
Sbjct: 129 PYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIA--VINPNNPTGALYDKK 186
Query: 142 ----IREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHD-IMLFTLSKCTGHAGSRI 196
I ++ + Y +P + D I++ LSK G R+
Sbjct: 187 TLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRL 246
Query: 197 GWALVKDTEVARKMTRFIE--LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSER 254
G+ D E R L I + + + A I G+ ++ + + + ER
Sbjct: 247 GYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPM--DYLKEYMKKLKER 304
Query: 255 WNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMAR 314
+ + + + + + + F W KE +L ++
Sbjct: 305 RDYIYKRLNEIPGISTTKPQGAFYIFP-----KIEVGPWKNDKEF--VLDVLHNAHVLFV 357
Query: 315 GGRRFGADAK-YARVSMLSREEIFNIFLERLSA 346
G FG + R L EI ++R
Sbjct: 358 HGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEK 390
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 45.1 bits (105), Expect = 7e-06
Identities = 49/322 (15%), Positives = 85/322 (26%), Gaps = 31/322 (9%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
P L EA+ V +V P + A
Sbjct: 64 PALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAG 123
Query: 99 QYPAETDY-LRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTIR-EAVLAKVNRSAE- 155
L ++ D A ++N+P NP G + E L + R A
Sbjct: 124 AKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARA 183
Query: 156 -GKLIHDLAYY------WPQYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVAR 208
+ Y A + + + K G R+GW + + R
Sbjct: 184 HDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPR 243
Query: 209 KMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268
S + L+A + F+E R R ++L +R G+
Sbjct: 244 LAGMRQW---TSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGL- 299
Query: 269 GLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAK---Y 325
+ + + D +L+ R+ F +
Sbjct: 300 --------------RVYVPEGTYFLMAELPGWDAFRLVEEARVALIPASAFYLEDPPKDL 345
Query: 326 ARVSMLSREEIFNIFLERLSAI 347
R + EE ++ LERL +
Sbjct: 346 FRFAFCKTEEELHLALERLGRV 367
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 44.2 bits (103), Expect = 1e-05
Identities = 41/324 (12%), Positives = 87/324 (26%), Gaps = 51/324 (15%)
Query: 38 VPELAEAI-NNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY 96
+P L + +A+ + R I + + S S P+ + +S +
Sbjct: 75 LPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTW 134
Query: 97 YSQYPA------------ETDYLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGT-IR 143
+ L G+ + + +NP G
Sbjct: 135 ANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPT 194
Query: 144 EAVLAKVNRSAEGK---LIHDLAYYWPQYTPITGAA-------------DHDIMLFTLSK 187
++ + K + D AY + A + + +K
Sbjct: 195 SEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAK 254
Query: 188 CTGHAGSRIGWALVKDTEVAR----------KMTRFIELGSIGVSKESQLRAAKILGIVS 237
G G R+G + T+ A+ ++ + I AK+L +
Sbjct: 255 NAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLE--T 312
Query: 238 DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPG-FAWLES 296
+ + MS R +R +R L + N+ + G F++
Sbjct: 313 PELTEQWHKDMVTMSSRITKMRHALRD----HLVKLGTPG-NWD--HIVNQCGMFSFTGL 365
Query: 297 KEDEDCEKLLRAERIMARGGRRFG 320
+ ++L + R
Sbjct: 366 TP-QMVKRLEETHAVYLVASGRAS 388
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 43.5 bits (101), Expect = 3e-05
Identities = 50/360 (13%), Positives = 101/360 (28%), Gaps = 73/360 (20%)
Query: 39 PELAEAI-NNLHHVVDNAVS-DGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY 96
P +A+ + + + N V+ D H+V+ G+T + ++ L+ PG V+ PY
Sbjct: 87 PAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEA----VLIPTPY 142
Query: 97 YSQY--------------------------PAETDYLRSGLYKWDGDANTFDKNNGAYIE 130
Y + + K + N +
Sbjct: 143 YPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPL 202
Query: 131 VVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPI------------TGAADH 178
N + V K ++ A+ P + + +
Sbjct: 203 GTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQR 262
Query: 179 DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD 238
++++LSK G G R+G D V T+ S
Sbjct: 263 VHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-----------SSFGLVSSQTQHLL 311
Query: 239 DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK- 297
+ + + + ++ V GL + + N F W++ +
Sbjct: 312 SAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGL------FCWVDMRH 365
Query: 298 ---------EDEDCEKLLRAERIMARGGRRFGADAK-YARVSM-LSREEIFNIFLERLSA 346
E E +K++ + G + RV E ++ ++RL A
Sbjct: 366 LLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKA 425
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 41.7 bits (96), Expect = 8e-05
Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 20/185 (10%)
Query: 164 YYWPQYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSK 223
H +L TLSK AG R G+ L + + M
Sbjct: 189 CPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPLSTPVA 248
Query: 224 ESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGK 283
+ +A GIV+ R L+ +
Sbjct: 249 DIAAQALSPQGIVAMRERVAQIIAEREYLIAA-------------------LKEIPCVEQ 289
Query: 284 FTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLER 343
+S + K K L + I+ R + + + R+++ +REE ++
Sbjct: 290 VFDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVGTREES-QRVIDA 348
Query: 344 LSAIQ 348
L A Q
Sbjct: 349 LRAEQ 353
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 40.7 bits (94), Expect = 2e-04
Identities = 41/309 (13%), Positives = 79/309 (25%), Gaps = 36/309 (11%)
Query: 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYS 98
PE L +A+ + + + A V + P +
Sbjct: 72 PEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWP 131
Query: 99 QYPAET-------------DYLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGTI-RE 144
+ + D L + + G + +NP G
Sbjct: 132 NHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTL 191
Query: 145 AVLAKVNRSAEGK---LIHDLAYYWPQYTP---------ITGAADHDIMLFTLSKCTGHA 192
+ + + K + D AY I+ + SK G
Sbjct: 192 EQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLY 251
Query: 193 GSRIGWALVKDT--EVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRL 250
R+G + E + ++ A ++ + + + + L
Sbjct: 252 NERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQEL 311
Query: 251 MSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPG-FAWLESKEDEDCEKLLRAE 309
R + R RQ V L E +F+ F G F++ + E +L
Sbjct: 312 TDMRQRIQRM--RQLFVNTLQEKGAN-RDFS--FIIKQNGMFSFSGLTK-EQVLRLREEF 365
Query: 310 RI-MARGGR 317
+ GR
Sbjct: 366 GVYAVASGR 374
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 40.4 bits (93), Expect = 3e-04
Identities = 43/342 (12%), Positives = 98/342 (28%), Gaps = 43/342 (12%)
Query: 39 PELAEAI-NNLHHVVDNAVS-DGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY 96
PE +AI + V D +V+ G+T + ++ L+ PG + + +PY
Sbjct: 86 PEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGD----AFLVPSPY 141
Query: 97 YSQYPAETDYLRSG--LYKWDGDANTFDKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSA 154
Y + + + + +N F + A E + + ++ +L +
Sbjct: 142 YPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPL 201
Query: 155 EGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI 214
L D +T ++ + I L +
Sbjct: 202 GTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVH 261
Query: 215 ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYP 274
+ S+ SK+ L ++ GI+ + R++ S + + + ++
Sbjct: 262 IVYSL--SKDMGLPGFRV-GIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFV 318
Query: 275 LEYCNFTGKFTNSH----------PGFAWLESK--------------------EDEDCEK 304
+ + G L++ E
Sbjct: 319 DNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRV 378
Query: 305 LLRAERIMARGGRRFGADAK-YARVSM-LSREEIFNIFLERL 344
++ ++ G F + RV + +I L R+
Sbjct: 379 IINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARI 420
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (92), Expect = 3e-04
Identities = 44/350 (12%), Positives = 92/350 (26%), Gaps = 40/350 (11%)
Query: 39 PELAEAI-NNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYY 97
P L + + + ++ + R++++ G A AL G I Y
Sbjct: 67 PPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYE 126
Query: 98 SQ----------------YPAETDYLRSGLYKWDGDANTFDKNNGAYIEVVNSPNNPDGT 141
+ S ++ D + V+N+PNNP G
Sbjct: 127 PMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGK 186
Query: 142 I---REAVLAKVNRSAEGKLIHDLAYYW------PQYTPI---TGAADHDIMLFTLSKCT 189
+ E L + Y Q+ I G + + + + K
Sbjct: 187 VFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF 246
Query: 190 GHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRR 249
G ++GW L D + T ++ A + +
Sbjct: 247 SATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQF 306
Query: 250 LMSERWNMLRQVIRQSGVFGLPEYP----LEYCNFTGKFTNSHPGFAWLESKEDED-CEK 304
+ + + V P P + + ++ D +
Sbjct: 307 PQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKW 366
Query: 305 LLRAERIMARGGRRFGADAK------YARVSMLSREEIFNIFLERLSAIQ 348
+++ + ++A F + Y R + E E+L +
Sbjct: 367 MIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWK 416
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 39.6 bits (91), Expect = 4e-04
Identities = 41/336 (12%), Positives = 90/336 (26%), Gaps = 56/336 (16%)
Query: 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDN-AVSDGRHIVIGT----GSTQLYQAALYAL 79
YL +G + E + L D+ A+ + R + + G+ ++ L
Sbjct: 69 EYLPILG------LAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARW 122
Query: 80 SSPGGPEPISVVSAAPYYSQYPAETDY--LRSGLYKWDGDANTFDKNNGAYIE------- 130
+ + V ++P + + + D + ++
Sbjct: 123 YNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPE 182
Query: 131 -----VVNSPNNPDGT-IREAVLAKVNRSAEGK---LIHDLAYYWPQY----------TP 171
+ +NP GT ++ + + D AY
Sbjct: 183 FSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRY 242
Query: 172 ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVA------RKMTRFIELGSIGVSKES 225
+ SK G R+G V E +M + + + +
Sbjct: 243 FVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQG 302
Query: 226 QLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFT 285
A+ L + + + + M++R +R +R L +
Sbjct: 303 ARIVARTLS--DPELFHEWTGNVKTMADRILSMRSELRA----RLEALKTP-GTWN--HI 353
Query: 286 NSHPG-FAWLESKEDEDCEKLLRAERIMARGGRRFG 320
G F++ + E L+ + I R
Sbjct: 354 TDQIGMFSFTGLNP-KQVEYLINQKHIYLLPSGRIN 388
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 39.6 bits (91), Expect = 5e-04
Identities = 39/311 (12%), Positives = 75/311 (24%), Gaps = 38/311 (12%)
Query: 38 VPELAEAINNLHHVVDN-AVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY 96
+ AI L D+ + R I T PE VS +
Sbjct: 72 LNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTW 131
Query: 97 YSQ---------YPAETDYLRSGLYKWD---GDANTFDKNNGAYIEVVNSPNNPDGTI-R 143
+ + + A + + + +NP G
Sbjct: 132 ENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLT 191
Query: 144 EAVLAKVNRSAEGK---LIHDLAYYWPQYTP---------ITGAADHDIMLFTLSKCTGH 191
V + + D+AY I A ++ + SK
Sbjct: 192 NDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSL 251
Query: 192 AGSRIGWALVKDTEVARKMTRFIELGSIGVSK----ESQLRAAKILGIVSDDYPNFFEYG 247
G R+G V + +L + + + + +
Sbjct: 252 YGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAE 311
Query: 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLR 307
M R +RQ + + +PE +Y F++ ++L
Sbjct: 312 VEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGM------FSYTGLSA-AQVDRLRE 364
Query: 308 AERI-MARGGR 317
+ + GR
Sbjct: 365 EFGVYLIASGR 375
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.95 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.95 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.93 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.93 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.92 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.9 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.89 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.88 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.88 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.86 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.86 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.85 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.82 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.82 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.81 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.81 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.8 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.8 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.79 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.78 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.78 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.75 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.75 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.75 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.75 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.75 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.73 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.73 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.72 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.72 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.72 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.71 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.7 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.7 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.67 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.65 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.65 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.64 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.6 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.56 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.53 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.53 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.52 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.47 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.45 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.44 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.44 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.41 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.39 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.39 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.38 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.37 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.37 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.36 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.32 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.28 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.23 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.22 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.74 |
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=3.1e-50 Score=376.84 Aligned_cols=338 Identities=35% Similarity=0.665 Sum_probs=295.9
Q ss_pred CchHHHHHHhcCCceeeecCCcccccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc
Q 018172 1 MAFEAFWRKLGDKCTMVISGSDLMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS 80 (360)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~ 80 (360)
+|+++||++..+.....+++|+.+.++.+.. |++..++|+++++++++..|...+.+.+|++|+|++|+|++++.+|.
T Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~--~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~ 144 (425)
T d2hoxa1 67 LFLEEYWKQHKEASAVLVSPWHRMSYFFNPV--SNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLS 144 (425)
T ss_dssp GGGHHHHTTSHHHHCEEECTTTTCSSSCSSC--CTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCcccceEEeecccccceecCCc--cccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhc
Confidence 3789999999999999999999997765533 46778999999999999888887777789999999999999999994
Q ss_pred --------CCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCcccccc--CCCeeEEEEcCCCCCCcccchHHHHHH
Q 018172 81 --------SPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFDK--NNGAYIEVVNSPNNPDGTIREAVLAKV 150 (360)
Q Consensus 81 --------~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~i~~~~p~NPtG~~~~~~~~~~ 150 (360)
+|||+ |+++.|+|+.|..+++..+.+...|+.|.+.+.. +++++++++++||||||.+...
T Consensus 145 ~~~~~~~~~pg~~----Vv~~~P~y~~Y~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~~----- 215 (425)
T d2hoxa1 145 PNMTATPDAPESK----VVAHAPFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHA----- 215 (425)
T ss_dssp CCTTTCTTSCCEE----EEECSSCCHHHHHHHHHSCBTTEEEEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCCC-----
T ss_pred cccccccCCCCCE----EEEecCccccHHHHHHHcCCCCCccCCCHHHHHhhCCCCceEEEEECCCCCCcchhhh-----
Confidence 56676 9999999999999999999999999999887765 5789999999999999987432
Q ss_pred hhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHH
Q 018172 151 NRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAA 230 (360)
Q Consensus 151 ~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 230 (360)
..++..+|+||+|.++++.++....++++++.||||+||++|+|+||++++++.+++.+.+.......+++.+.|.++.
T Consensus 216 -v~~~~~~I~DEaY~~~~f~~~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~ 294 (425)
T d2hoxa1 216 -VIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSL 294 (425)
T ss_dssp -SSTTCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred -hhhCCEEEEeccccCccccchhhhcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHH
Confidence 2278999999999998898999999999999999999999999999988878999999999888888999999999998
Q ss_pred HHhccc-------CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCC-CCCcccccccccCCCCCCcccccCCch--H
Q 018172 231 KILGIV-------SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPE-YPLEYCNFTGKFTNSHPGFAWLESKED--E 300 (360)
Q Consensus 231 ~~l~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 300 (360)
++++.. ....+++++..++.++++++.+.+.|.+.+.+.+.. |.++++.|......+.+.|+|+++... +
T Consensus 295 ~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~ 374 (425)
T d2hoxa1 295 KVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDK 374 (425)
T ss_dssp HHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGC
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCChHH
Confidence 888632 122247889999999999999999999998776654 457777887777888889999998654 7
Q ss_pred HHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 301 DCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 301 ~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
++.++|+++||.++||+.||.+++|+|||+..++|++++++++|++++++
T Consensus 375 ~~~~lL~e~gI~v~pGs~FG~~~~yvRisl~~~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 375 DCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp SHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCEEEEechhcCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 78899999999999999999778999999988999999999999999975
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.2e-46 Score=348.06 Aligned_cols=303 Identities=18% Similarity=0.216 Sum_probs=254.7
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
.++|+++.|. ++||++++++++. .+....++++|++|+|+++++..++..++++||+ |+++.|+|..+..
T Consensus 55 ~~~Y~~~~G~-----~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~----vlv~~P~y~~~~~ 125 (388)
T d1gdea_ 55 LTHYGPNIGL-----LELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEE----VLIPTPAFVSYAP 125 (388)
T ss_dssp CCSCCCTTCC-----HHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCE----EEEEESCCTTHHH
T ss_pred ccCCCCCcCC-----HHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhcCCCCE----EEECCCCcHHHHH
Confidence 3579999998 9999999998764 5555666778999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcc-cc--cc-------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCC-
Q 018172 103 ETDYLRSGLYKWDGDAN-TF--DK-------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWP- 167 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~-~~--~~-------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~- 167 (360)
.++..|++++.++.+.+ ++ +. +++++++++++||||||.++++ .+.++|++++++||+||+|.+.
T Consensus 126 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~ 205 (388)
T d1gdea_ 126 AVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFI 205 (388)
T ss_dssp HHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred HHHHcCCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhh
Confidence 99999999999987643 22 21 4689999999999999999993 4557788899999999999852
Q ss_pred ----CCCc---CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCc
Q 018172 168 ----QYTP---ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 168 ----~~~~---~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
...+ +....+++++++||||.|+++|+|+||+++ ++++++.+.........+.+.+.|.++..++.. ..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 282 (388)
T d1gdea_ 206 YDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA-PSWIIERMVKFQMYNATCPVTFIQYAAAKALKD--ERS 282 (388)
T ss_dssp CTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTC--HHH
T ss_pred hccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEe-eccchhhhhhccccccccccccchhhHHHHHhh--ccc
Confidence 1222 223557899999999999999999999999 899999999988888899999999999988872 233
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----h-HHHHHHHHhhCeeeeC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----D-EDCEKLLRAERIMARG 315 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~gI~~~p 315 (360)
..++++.++.++++++.+.+.|...+ +.+..|.|++ |+|+++++ . +.+..+|+++||.++|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~p~gg~-------------fl~~~l~~~~~~~~~~~~~ll~e~gV~v~P 348 (388)
T d1gdea_ 283 WKAVEEMRKEYDRRRKLVWKRLNEMG-LPTVKPKGAF-------------YIFPRIRDTGLTSKKFSELMLKEARVAVVP 348 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCBTT-------------EECCBCGGGTCCHHHHHHHHHHHTCEECEE
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhcc-ccccCCCceE-------------EEEEECCCCCCCHHHHHHHHHHhCCEEEEe
Confidence 47788889999999999999998874 4555566665 78888864 2 5566678888999999
Q ss_pred CCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 316 GRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 316 g~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
|+.|+. .++|+|+|++.++|++++++++|++++++.+
T Consensus 349 G~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l~e~k 386 (388)
T d1gdea_ 349 GSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKERK 386 (388)
T ss_dssp GGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence 999975 5789999998899999999999999998764
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=7.7e-46 Score=346.11 Aligned_cols=298 Identities=18% Similarity=0.238 Sum_probs=253.9
Q ss_pred cccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
.++|+++.|. ++||+++++++. .+|..+++ ++|++|+|+++++..++.+++++||+ |++++|+|+.+..
T Consensus 60 ~~~Y~~~~G~-----~~lR~aia~~~~~~~g~~~~~-~~i~it~G~~~al~~~~~~~~~~gd~----Vlv~~P~y~~~~~ 129 (388)
T d1j32a_ 60 KTRYGPAAGE-----PRLREAIAQKLQRDNGLCYGA-DNILVTNGGKQSIFNLMLAMIEPGDE----VIIPAPFWVSYPE 129 (388)
T ss_dssp CCSCCCTTCC-----HHHHHHHHHHHHHHHCCCCCG-GGEEEESHHHHHHHHHHHHHCCTTCE----EEEESSCCTHHHH
T ss_pred CCCCCCCCCC-----HHHHHHHHHHHHHhcccCCCC-ceEEEcCCHHHHHHHHHHHHhCCCCE----EEEcCCCcHHHHH
Confidence 3569999998 999999999865 55777766 48999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC
Q 018172 103 ETDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
+++..|.+++.++.+.+ ++.. +++++++++++||||||.++++ .+.++|+++++++|+||+|.+..
T Consensus 130 ~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~ 209 (388)
T d1j32a_ 130 MVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKIL 209 (388)
T ss_dssp HHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred HHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhccc
Confidence 99999999998886643 2222 4689999999999999999993 45677888999999999997421
Q ss_pred -----CCcCCC----CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCC
Q 018172 169 -----YTPITG----AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 169 -----~~~~~~----~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (360)
..++.. ..++++++.||||.|++||+|+||+++ ++++++.+.+.......+.+...|.++...+.. .
T Consensus 210 ~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~--~- 285 (388)
T d1j32a_ 210 YDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAG-PVPLVKAATKIQGHSTSNVCTFAQYGAIAAYEN--S- 285 (388)
T ss_dssp CTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHS--C-
T ss_pred ccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEE-CHHHHHHHHHhhhhccccccHHHHHHHhhcccc--h-
Confidence 222221 235799999999999999999999998 899999998888877889999999988887763 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-----HHHHHHHHhhCeeee
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-----EDCEKLLRAERIMAR 314 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~gI~~~ 314 (360)
++++++.++.++++++.+.+.|++++++.+..|+|++ |+|++++.. +.+.++++++||.++
T Consensus 286 -~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg~-------------~l~~~l~~~~~~~~~~~~~ll~~~gV~v~ 351 (388)
T d1j32a_ 286 -QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAF-------------YMFPSIAKTGRSSLDFCSELLDQHQVATV 351 (388)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTT-------------EECCBCGGGTCCHHHHHHHHHHHHCEECE
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCceE-------------EEEEECCCCCCCHHHHHHHHHHhCCEEEE
Confidence 3899999999999999999999999888888887776 788877532 556777888999999
Q ss_pred CCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 315 GGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 315 pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
||+.|+. ++++|++++.++|++++++++|+++++.
T Consensus 352 pG~~F~~-~~~~Rls~~~~~e~l~~al~rl~~~l~~ 386 (388)
T d1j32a_ 352 PGAAFGA-DDCIRLSYATDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp EGGGGTC-TTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred eccccCC-CCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 9999985 7899999988999999999999999864
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.9e-45 Score=342.97 Aligned_cols=298 Identities=21% Similarity=0.293 Sum_probs=251.1
Q ss_pred cccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
..+|+++.|. ++||+++++++. .++..+++ ++|++|+|+++++..++.+++++||. |++++|+|+.+..
T Consensus 61 ~~~Y~~~~G~-----~~lR~~ia~~~~~~~~~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~----vl~~~P~y~~~~~ 130 (382)
T d1b5pa_ 61 KTKYAPPAGI-----PELREALAEKFRRENGLSVTP-EETIVTVGGSQALFNLFQAILDPGDE----VIVLSPYWVSYPE 130 (382)
T ss_dssp CCSCCCTTCC-----HHHHHHHHHHHHHTTCCCCCG-GGEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCTHHHH
T ss_pred CcCCCCCCCC-----HHHHHHHHhhhhhhccccccc-ccceecCCHHHHHHHHHHHhCCCCCE----EEECCCCcHHHHH
Confidence 3579999998 999999999875 55667776 58999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCC-
Q 018172 103 ETDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWP- 167 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~- 167 (360)
.++..|++++.++.+.+ ++.. +++++++++++||||||.++++ .+.++|+++++++|+||+|.+.
T Consensus 131 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~ 210 (382)
T d1b5pa_ 131 MVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLL 210 (382)
T ss_dssp HHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred HHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEcccccee
Confidence 99999999999986543 3322 4688999999999999999993 4567788899999999999852
Q ss_pred ----CCCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 168 ----QYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 168 ----~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
...+.....+++++++||||.|++||+|+||+++ ++++++.+.+.+.....+.+.+.|.++...+... ...+.+
T Consensus 211 ~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 288 (382)
T d1b5pa_ 211 YEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACG-PKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQ-EASRAF 288 (382)
T ss_dssp SSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCH-HHHHHH
T ss_pred cCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEE-CHHHHHHHHHHHHhcccCcccccccccccccccc-cchhHH
Confidence 2233445678999999999999999999999998 8999999998888888889999998887766521 123477
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeeeCCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMARGGRRF 319 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~pg~~f 319 (360)
++..++.++++++.+.+.+...+ +.+..|+|++ |+|++++. ...+.+.|.++||.++||+.|
T Consensus 289 ~~~~~~~~~~~~~~~~~~l~~~g-~~~~~p~gg~-------------~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F 354 (382)
T d1b5pa_ 289 VEMAREAYRRRRDLLLEGLTALG-LKAVRPSGAF-------------YVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDF 354 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-CCBCCCSBTT-------------EEEEECTTTCSSHHHHHHHHHHTTEECEESGGG
T ss_pred HHHHHHHHHhhhhHHHHHHhhcC-CeEecCCceE-------------EEeEeCCCCCCCHHHHHHHHHHCCEEEEeCccc
Confidence 88889999999999999998884 6667777776 78888742 266778888999999999999
Q ss_pred CCCCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 320 GADAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 320 ~~~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
+. ++++|++++.++|++++++++|++++
T Consensus 355 ~~-~~~iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 355 AA-FGHVRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp TC-TTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred CC-CCeEEEEEcCCHHHHHHHHHHHHHhC
Confidence 85 78999999889999999999998764
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=1.1e-44 Score=341.61 Aligned_cols=316 Identities=13% Similarity=0.148 Sum_probs=254.4
Q ss_pred cccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
.+.|+++.|. ++||+++|+++. .+|..++++++|++|+|+++++..++..++++||. |++++|+|+.+..
T Consensus 59 ~~~Y~~~~G~-----~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~----vlv~~P~y~~~~~ 129 (418)
T d2r5ea1 59 ANQYTRGFGH-----PRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDE----VIIIEPFFDCYEP 129 (418)
T ss_dssp GGSCCCTTCC-----HHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCTTHHH
T ss_pred CcCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccc----eeccccccchhhH
Confidence 3569999998 999999999876 45888887779999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCccccc---------c---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEE
Q 018172 103 ETDYLRSGLYKWDGDANTFD---------K---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIH 160 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~~~~---------~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~ 160 (360)
.+...|.+++.++.+.++.. . ..+++++++++||||||.+++. .+.++|+++++++|+
T Consensus 130 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~ 209 (418)
T d2r5ea1 130 MVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVS 209 (418)
T ss_dssp HHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeec
Confidence 99999999998887643211 1 3588999999999999999993 455778889999999
Q ss_pred eecccCCCC--------CcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHH
Q 018172 161 DLAYYWPQY--------TPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKI 232 (360)
Q Consensus 161 D~ay~~~~~--------~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 232 (360)
||+|.+..+ ..+.+..++++++.|+||.+++||+|+||+++ ++++++.+.+.......+.+.+.|.++...
T Consensus 210 De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~-~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~ 288 (418)
T d2r5ea1 210 DEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYG-PEALLKNLQMVHQNCVYTCATPIQEAIAVG 288 (418)
T ss_dssp ECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEES-CHHHHHHHHHHHTTTTCSCCHHHHHHHHHH
T ss_pred ccchhhhccCCCccccccccccccceeeeeecCCccccCCCcccccccc-cchhhhhhhhcccccccccccchhhhcccc
Confidence 999985221 22335677899999999999999999999999 899999999888877889999999888776
Q ss_pred hcc---cCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcc--cccCCch-HHHHHHH
Q 018172 233 LGI---VSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFA--WLESKED-EDCEKLL 306 (360)
Q Consensus 233 l~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~l 306 (360)
+.. .....+.++.++++.++++|+.+.+.|+++ ++.+..|+|+++.|.+.......... ..+..+. +++..+|
T Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 367 (418)
T d2r5ea1 289 FETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMT 367 (418)
T ss_dssp HHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-TCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc-CCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHH
Confidence 542 112234899999999999999999999998 57777888888443321110000000 0011122 6677788
Q ss_pred HhhCeeeeCCCCCCCC------CCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 307 RAERIMARGGRRFGAD------AKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 307 ~~~gI~~~pg~~f~~~------~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
+++||.+.||+.|+.. ++|+|||++.++|++++++++|++++.+
T Consensus 368 ~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~~e~l~~a~~rl~~~lg~ 417 (418)
T d2r5ea1 368 KSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKGS 417 (418)
T ss_dssp HHHSEECBCGGGGSCGGGHHHHTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred HHCCEEEeCchhhCCCCCccCCCCEEEEEecCCHHHHHHHHHHHHHHHcc
Confidence 8899999999999742 4799999977999999999999999865
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.3e-44 Score=335.79 Aligned_cols=300 Identities=17% Similarity=0.222 Sum_probs=246.1
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
.++|++..|. ++||+++++++.. +|..+++ ++|++|+|+++++.+++..++++||. |++++|+|+.+..
T Consensus 63 ~~~Y~~~~G~-----~~LR~aia~~~~~~~g~~~~~-~~i~i~~G~~~~~~~~~~~~~~~Gd~----vlv~~P~y~~~~~ 132 (395)
T d1xi9a_ 63 HNYYGDSEGL-----PELRKAIVEREKRKNGVDITP-DDVRVTAAVTEALQLIFGALLDPGDE----ILVPGPSYPPYTG 132 (395)
T ss_dssp CCSCCCTTCC-----HHHHHHHHHHHHHHHCCCCCG-GGEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCHHHHH
T ss_pred CCCCCCCCCC-----HHHHHHHHHhhhhcccccccc-cccccccccchhhhhhhhhhcCCCCE----EEEcCCccccchh
Confidence 3569999998 9999999998764 4777766 59999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcc-cccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC
Q 018172 103 ETDYLRSGLYKWDGDAN-TFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~-~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
.++..|++++.++.+.+ ++.. .++++++++++||||||.++++ .+.++|+++++++|.|++|.+..
T Consensus 133 ~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~ 212 (395)
T d1xi9a_ 133 LVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMT 212 (395)
T ss_dssp HHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCB
T ss_pred hhhhcCCEEEEEeccccccccchHHHHHHhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEecccccccc
Confidence 99999999998875432 3322 4689999999999999999993 45678888999999999998532
Q ss_pred CC----c--CCCCCCccEEEeccccccCCCCceEEEEeecC-HHHHHHH---HHHHhhccccCChHHHHHHHHHhcccCC
Q 018172 169 YT----P--ITGAADHDIMLFTLSKCTGHAGSRIGWALVKD-TEVARKM---TRFIELGSIGVSKESQLRAAKILGIVSD 238 (360)
Q Consensus 169 ~~----~--~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~-~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (360)
+. + .....+++++++||||+|++||+|+||+++.+ ...+..+ .........+.+.+.|.++...+.. .
T Consensus 213 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~--~ 290 (395)
T d1xi9a_ 213 YEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTG--P 290 (395)
T ss_dssp SSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHS--C
T ss_pred ccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcC--C
Confidence 21 1 12456789999999999999999999987633 2222222 2222335677888999999887763 3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----h-HHHHHHHHhhCee
Q 018172 239 DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----D-EDCEKLLRAERIM 312 (360)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~l~~~gI~ 312 (360)
. .++++.++.++++++.+.+.|++++++.+..|.|++ |+|++++. + +++.++|+++||.
T Consensus 291 ~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~-------------~~~~~l~~~~~~~~~~~~~~ll~~~gV~ 355 (395)
T d1xi9a_ 291 M--DYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAF-------------YIFPKIEVGPWKNDKEFVLDVLHNAHVL 355 (395)
T ss_dssp C--HHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSS-------------EECCEECSCSCSSHHHHHHHHHHHHCEE
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeE-------------EEeEECCCCCCCCHHHHHHHHHHhCCEE
Confidence 3 899999999999999999999999877877787776 77777642 3 6678889999999
Q ss_pred eeCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 313 ARGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 313 ~~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
++||+.|+. .++|+||+++.++|++++++++|++++++
T Consensus 356 v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 356 FVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp CEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred EEcChhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 999999986 47899999988999999999999999875
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.4e-43 Score=327.77 Aligned_cols=292 Identities=20% Similarity=0.272 Sum_probs=248.3
Q ss_pred ccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|+++.|. ++||++++++++ .++.+.++ ++|++|+|+++++..++..|+++||. |++++|+|+.+...
T Consensus 59 ~~Y~~~~G~-----~~lR~aia~~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~----vlv~~P~y~~~~~~ 128 (375)
T d1o4sa_ 59 VKYTDPRGI-----YELREGIAKRIGERYKKDISP-DQVVVTNGAKQALFNAFMALLDPGDE----VIVFSPVWVSYIPQ 128 (375)
T ss_dssp CCCCCTTCC-----HHHHHHHHHHHHHHHTCCCCG-GGEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCTTHHHH
T ss_pred cCCCCCcCC-----HHHHHHHHhhhhhcccccccc-ccccccCcHHHHHHHHHHHHhCCCCE----EEEccCccccchhh
Confidence 469999998 999999999876 45666665 58999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcccccc----------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCC
Q 018172 104 TDYLRSGLYKWDGDANTFDK----------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~----------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
+...|...+.++.+.++... ..++++++++|||||||.+++. .+.++|++++++||+||+|.+..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 208 (375)
T d1o4sa_ 129 IILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVY 208 (375)
T ss_dssp HHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBC
T ss_pred hhccccccccccccccccccchhHHHHHhhccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccc
Confidence 99999999988766443221 3688999999999999999992 455678889999999999985322
Q ss_pred C-------cCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchh
Q 018172 170 T-------PITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPN 242 (360)
Q Consensus 170 ~-------~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (360)
. ...+..+++++++|+||.|++||+|+||+++ +++.++.+...+.....+.+...+..+...++ .
T Consensus 209 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 280 (375)
T d1o4sa_ 209 TDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLIS-SEKVATAVSKIQSHTTSCINTVAQYAALKALE-------V 280 (375)
T ss_dssp SSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTT-------C
T ss_pred cccccccccccCCCCCEEEEeechhhccCCccccccccc-cccchhhhhhhhccccccccccchhhhhhhcc-------c
Confidence 1 1236778999999999999999999999999 89999999888887778888888877776555 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch--HHHHHHHHhhCeeeeCCCCCC
Q 018172 243 FFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED--EDCEKLLRAERIMARGGRRFG 320 (360)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~gI~~~pg~~f~ 320 (360)
+....++.++++++.+.+.|++. ++.+..|.|++ |+|++++.. +.+.++|+++||.++||+.|+
T Consensus 281 ~~~~~~~~~~~r~~~~~~~l~~~-g~~~~~p~gg~-------------f~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~ 346 (375)
T d1o4sa_ 281 DNSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAF-------------YLFFKVRGDDVKFCERLLEEKKVALVPGSAFL 346 (375)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSS-------------EEEEECSSCHHHHHHHHHHHHCEECEEGGGGT
T ss_pred chhhhHHHHHHHHHHHHHHHHhc-CceEecCCccE-------------EEEEECCCCHHHHHHHHHHhCCEEEEEccccC
Confidence 55677888999999999999998 46667677665 889988754 778888889999999999998
Q ss_pred CCCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 321 ADAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 321 ~~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
. ++|+||+++.++|++++++++|+++++
T Consensus 347 ~-~g~iRis~~~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 347 K-PGFVRLSFATSIERLTEALDRIEDFLN 374 (375)
T ss_dssp C-TTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred C-CCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 5 789999998899999999999999986
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.1e-44 Score=335.97 Aligned_cols=302 Identities=15% Similarity=0.210 Sum_probs=253.9
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
.++|+++.|+ ++||++++++++. .|.+++++++|++|+|+++++..++..++++|+. |++++|+|+.|..
T Consensus 57 ~~~Y~~~~G~-----~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~----vlv~~p~~~~y~~ 127 (418)
T d1w7la_ 57 LNQYTKTFGY-----PPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDE----VIIIEPFFDCYEP 127 (418)
T ss_dssp GGSCCCTTCC-----HHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCTTHHH
T ss_pred ccCCCCCcCC-----HHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCce----eeccccccchhHH
Confidence 4569999998 9999999999764 4888877678999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCc-----------ccccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEE
Q 018172 103 ETDYLRSGLYKWDGDA-----------NTFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKL 158 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~-----------~~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~l 158 (360)
.+...|++++.++.+. +++.. .++++++++++||||||.++++ .+.++|+++++++
T Consensus 128 ~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~v 207 (418)
T d1w7la_ 128 MTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVC 207 (418)
T ss_dssp HHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHcCCEeeccccccccccccccccccCcccchhhhhccccccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCc
Confidence 9999999998776442 22222 3688999999999999999983 4567788899999
Q ss_pred EEeecccCCC-----CC---cCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHH
Q 018172 159 IHDLAYYWPQ-----YT---PITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAA 230 (360)
Q Consensus 159 i~D~ay~~~~-----~~---~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 230 (360)
|+|++|.+.. .. .+.+..++++++.|+||.+++||+|+||+++ ++++++.+.+.+.....+.+.+.|.++.
T Consensus 208 I~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~-~~~~~~~l~~~~~~~~~~~~~~~q~~~~ 286 (418)
T d1w7la_ 208 ITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLG-PDHIMKHLRTVHQNSVFHCPTQSQAAVA 286 (418)
T ss_dssp EEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEEC-CHHHHHHHHHHHHTTTSCCCHHHHHHHH
T ss_pred hhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCccccccc-chhhhhhhccccccccccccchhhHHHH
Confidence 9999998521 12 2234567899999999999999999999999 8999999999998888999999999998
Q ss_pred HHhcc---cCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---------
Q 018172 231 KILGI---VSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--------- 298 (360)
Q Consensus 231 ~~l~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 298 (360)
.++.. ..+....++...++.++++++.+.+.|.+. ++.+..|.|++ |+|+++++
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~-------------f~~~~~~~~~~~~~~~~ 352 (418)
T d1w7la_ 287 ESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPLIPQGSY-------------FLITDISDFKRKMPDLP 352 (418)
T ss_dssp HHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEECSBSS-------------EEEEECHHHHHHCCCCC
T ss_pred HHhhhccccccccccccccchhhhhhhhhhhhhhhhhc-CCcccCCCcee-------------EEEEECcccccccchhc
Confidence 87753 223335889999999999999999999998 56777788877 66665531
Q ss_pred -------h-HHHHHHHHhhCeeeeCCCCCCC------CCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 299 -------D-EDCEKLLRAERIMARGGRRFGA------DAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 299 -------~-~~~~~~l~~~gI~~~pg~~f~~------~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
. +.+.++|+++||.++||+.|+. .++|+|||++.+++++++++++|+++..
T Consensus 353 ~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~~~~~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 353 GAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKV 417 (418)
T ss_dssp CCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHHC
T ss_pred cccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 2 5678889999999999999963 3579999998899999999999998864
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=1.8e-43 Score=332.68 Aligned_cols=301 Identities=17% Similarity=0.184 Sum_probs=240.7
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhc-------CCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCC
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVV-------DNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY 96 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~-------~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~ 96 (360)
.+.|++..|. ++||+++++++.++ +..+++ ++|++|+|+++++..++.+++++||+ |++++|+
T Consensus 65 ~~~Y~~~~G~-----~~LReaia~~~~~~~~~~~~~~~~~~~-~~I~it~G~~~al~~~~~~l~~~Gd~----Vlv~~P~ 134 (412)
T d1bw0a_ 65 CNGYFPTVGS-----PEAREAVATWWRNSFVHKEELKSTIVK-DNVVLCSGGSHGILMAITAICDAGDY----ALVPQPG 134 (412)
T ss_dssp SSSCCCTTCC-----HHHHHHHHHHHHHHHCCSTTTGGGCCG-GGEEEESHHHHHHHHHHHHHCCTTCE----EEEEESC
T ss_pred CCCCCCCcCC-----HHHHHHHHHHHHHhcCcccccCCCCCC-CeEEEecccccchhhhhhhhhccccc----eeeeecc
Confidence 3569999998 99999999998654 334555 59999999999999999999999998 9999999
Q ss_pred CCCcHHHHHHhCCeeeeecCCccc-ccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEee
Q 018172 97 YSQYPAETDYLRSGLYKWDGDANT-FDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDL 162 (360)
Q Consensus 97 ~~~~~~~~~~~g~~~~~~~~~~~~-~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ 162 (360)
|+.+..+++..|++++.++++.++ +.. .++++++++++||||||.++++ .+.++|++++++||+||
T Consensus 135 y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De 214 (412)
T d1bw0a_ 135 FPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDE 214 (412)
T ss_dssp CTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred chhhhhhhhccCccccccccccccccchhhHHHHhhhhccccccccccccccccccchhhhccccccccccCCeeeechh
Confidence 999999999999999999876432 221 4688999999999999999983 45567778999999999
Q ss_pred cccCCCCC-----c------CCCCCCccEEEeccccccCCCCceEEEEeecC-----HHHHHHHHHHHhhccccCChHHH
Q 018172 163 AYYWPQYT-----P------ITGAADHDIMLFTLSKCTGHAGSRIGWALVKD-----TEVARKMTRFIELGSIGVSKESQ 226 (360)
Q Consensus 163 ay~~~~~~-----~------~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~ 226 (360)
+|.+..+. + ......++++++|+||.++++|+|+||+++++ ..++......... ..+.+.+.|
T Consensus 215 ~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 293 (412)
T d1bw0a_ 215 IYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGML-VCGPCTVVQ 293 (412)
T ss_dssp TTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHH-HTCSCHHHH
T ss_pred hHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhhcchhhhhhhcccccc-ccCCchhhh
Confidence 99842111 1 11234567889999999999999999999843 3455555544432 345556666
Q ss_pred HHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC--------c
Q 018172 227 LRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK--------E 298 (360)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 298 (360)
.++.+.+. +..++++.+.++.++++++.+.+.|.+..++.+..|.|++ |+|++++ +
T Consensus 294 ~~~~~~~~---~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~-------------~l~~~~~~~~~~~~~~ 357 (412)
T d1bw0a_ 294 AALGEALL---NTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAM-------------YLMSRIDLEKYRDIKT 357 (412)
T ss_dssp HHHHHHHH---SSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTT-------------EEEEEECGGGBSSCCS
T ss_pred hhcccccc---cccccccccccchhHHHHHHHHHHHHHhcCceecCCCCce-------------EEEEeCChhhcCCCCC
Confidence 66655444 2335899999999999999999999988788888888887 5555443 3
Q ss_pred h-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 299 D-EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 299 ~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
. +++.++|+++||.+.||+.|+. ++|+|||++.++|++++++++|++++++..
T Consensus 358 ~~~~~~~ll~~~gV~v~PG~~Fg~-~g~iRis~~~~~e~l~eal~Rl~~~l~~~~ 411 (412)
T d1bw0a_ 358 DVEFFEKLLEEENVQVLPGTIFHA-PGFTRLTTTRPVEVYREAVERIKAFCQRHA 411 (412)
T ss_dssp HHHHHHHHHHHHCEECEEGGGGTC-TTEEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHhCCEEEEeccccCC-CCeEEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 3 6677888888999999999985 789999998899999999999999997653
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=5.6e-43 Score=330.75 Aligned_cols=302 Identities=18% Similarity=0.285 Sum_probs=241.9
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhhc-C--CCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHVV-D--NAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ 99 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~~-~--~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~ 99 (360)
.+..|+++.|. ++||+++|+|++.+ | +.+++ ++|++|+|+++++..++.+++++||. |+++.|+|+.
T Consensus 75 ~~~~Y~~~~G~-----~~LR~aiA~~l~~~~~~~~~~~~-e~Ivit~G~~~al~~~~~~l~~~Gd~----Vlv~~P~y~~ 144 (428)
T d1iaya_ 75 AIANFQDYHGL-----PEFRKAIAKFMEKTRGGRVRFDP-ERVVMAGGATGANETIIFCLADPGDA----FLVPSPYYPA 144 (428)
T ss_dssp HHHHCCCTTCC-----HHHHHHHHHHHHHHTTTCSCCCT-TSCEEEEHHHHHHHHHHHHHCCTTCE----EEEESSCCTT
T ss_pred HhccCcCCcch-----HHHHHHHHHHHHHHhCCCCCCCh-hhEEEcCCHHHHHHHHHHHhCCCCCE----EEEccCCchH
Confidence 34679999998 99999999998753 4 33455 48999999999999999999999998 9999999999
Q ss_pred cHHHHHH-hCCeeeeecCCcc-cccc---------------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEE
Q 018172 100 YPAETDY-LRSGLYKWDGDAN-TFDK---------------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKL 158 (360)
Q Consensus 100 ~~~~~~~-~g~~~~~~~~~~~-~~~~---------------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~l 158 (360)
+...+.. .|++++.++.+.+ ++.. .++++++++++||||||.+++ +.+.++|+++++++
T Consensus 145 ~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~v 224 (428)
T d1iaya_ 145 FNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHL 224 (428)
T ss_dssp HHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEE
Confidence 9887775 4899999887643 2222 467899999999999999999 34567888899999
Q ss_pred EEeecccCCC-----CCcC----------CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCCh
Q 018172 159 IHDLAYYWPQ-----YTPI----------TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSK 223 (360)
Q Consensus 159 i~D~ay~~~~-----~~~~----------~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~ 223 (360)
|+||+|.+.. +.++ ....+++++++||||.|+++|+|+||+++.++.+.+.+...... ...+.
T Consensus 225 I~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~--~~~~~ 302 (428)
T d1iaya_ 225 VCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF--GLVST 302 (428)
T ss_dssp EEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTT--SCCCH
T ss_pred EecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhcc--ccccc
Confidence 9999998421 1111 13567899999999999999999999999677788877766543 45667
Q ss_pred HHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----
Q 018172 224 ESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----- 298 (360)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 298 (360)
+.|.++++.+... ...+.++++.++.++++++.+.+.|+.. ++.+..|.+++ |+|++++.
T Consensus 303 ~~~~~~~a~l~~~-~~~~~~~~~~~~~l~~r~~~~~~~L~~~-gi~~~~p~gg~-------------f~w~~l~~~~~~~ 367 (428)
T d1iaya_ 303 QTQYFLAAMLSDE-KFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGL-------------FCWMDLRPLLRES 367 (428)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSS-------------EEEEECGGGCSSS
T ss_pred ccccchhhhhhhh-ccccccccccccccchhHHHHHHHHHhC-CCEEecCCcce-------------EEEEECccccccC
Confidence 7777777655521 1234788899999999999999999876 56777777776 77777652
Q ss_pred ----h-HHHHHHHHhhCeeeeCCCCCCC-CCCeEEEEecC-ChHHHHHHHHHHHHHHhch
Q 018172 299 ----D-EDCEKLLRAERIMARGGRRFGA-DAKYARVSMLS-REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 299 ----~-~~~~~~l~~~gI~~~pg~~f~~-~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~ 351 (360)
. +.+..+|+++||.++||+.|+. .++|+|||++. +++++++++++|++++...
T Consensus 368 ~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~~ 427 (428)
T d1iaya_ 368 TFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp SHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence 1 4466777888999999999986 57899999976 7788999999999999764
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-42 Score=323.81 Aligned_cols=295 Identities=19% Similarity=0.270 Sum_probs=250.5
Q ss_pred cccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
.+.|++..|. ++||++++++++ .+|.+.+++++|++|+|+++++.+++.+++++||. |++++|+|..+..
T Consensus 56 ~~~Y~~~~G~-----~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~----vl~~~p~y~~~~~ 126 (382)
T d1u08a_ 56 ANQYAPMTGV-----QALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDE----VICFDPSYDSYAP 126 (382)
T ss_dssp CCSCCCTTCC-----HHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCE----EEEEESCCTTHHH
T ss_pred CCCCCCCcCC-----HHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcccccce----EEEecccccchhh
Confidence 3579999998 999999999976 45888888767999999999999999999999998 9999999999999
Q ss_pred HHHHhCCeeeeecCCcccccc---------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCCC
Q 018172 103 ETDYLRSGLYKWDGDANTFDK---------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQY 169 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~~ 169 (360)
.+...|.....++.+.++... .++++++++++||||||.+++. .+.+++++++++++.|+.|....+
T Consensus 127 ~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~ 206 (382)
T d1u08a_ 127 AIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINF 206 (382)
T ss_dssp HHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBC
T ss_pred hhhhccccceecccccccccCCHHHHhhhhccCccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccc
Confidence 999999988887766554433 4689999999999999999983 455677789999999999874211
Q ss_pred Cc--------CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCch
Q 018172 170 TP--------ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 170 ~~--------~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
.. .....++++++.|+||.+++||+|+||+++ ++++++.+.+.......+.+.+.|.++..+++. + +
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~-~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~--~--~ 281 (382)
T d1u08a_ 207 SQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVA-PAPISAEIRKVHQYLTFSVNTPAQLALADMLRA--E--P 281 (382)
T ss_dssp CSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEEC-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH--C--T
T ss_pred cccccccccccccccCcEEEEeeccccccCCcccchhhhc-cchhHHHHHhhhccccccccccccccccccccc--c--h
Confidence 11 113467899999999999999999999998 899999999888888899999999999998873 3 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----h-HHHHHHHHhhCeeeeC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----D-EDCEKLLRAERIMARG 315 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~l~~~gI~~~p 315 (360)
+++.++++.++++++.+.+.++.. ++.+..|.|++ |+|++++. . +++.++|+++||.+.|
T Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~p~gg~-------------~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~P 347 (382)
T d1u08a_ 282 EHYLALPDFYRQKRDILVNALNES-RLEILPCEGTY-------------FLLVDYSAVSTLDDVEFCQWLTQEHGVAAIP 347 (382)
T ss_dssp HHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSS-------------EEEEECTTTCCSCHHHHHHHHHHHSCEECEE
T ss_pred HHHHHHHHHHHhhhhhhhhhhccC-CcEEecCCceE-------------EEEEecCCCCCCCHHHHHHHHHHHCCEEEEc
Confidence 899999999999999999998766 56777777776 77877753 2 5677788889999999
Q ss_pred CCCCCC---CCCeEEEEecCChHHHHHHHHHHHH
Q 018172 316 GRRFGA---DAKYARVSMLSREEIFNIFLERLSA 346 (360)
Q Consensus 316 g~~f~~---~~~~~R~s~~~~~e~~~~~~~~l~~ 346 (360)
|+.|+. +.+++|||++.++|++++++++|++
T Consensus 348 G~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 348 LSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 381 (382)
T ss_dssp GGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred chhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHhC
Confidence 999964 3578999998899999999999876
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.1e-43 Score=329.85 Aligned_cols=304 Identities=17% Similarity=0.156 Sum_probs=253.3
Q ss_pred ccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|+++.|. ++||+++++++. .+|.+..++++|++|+|+++++.+++..++++||. |++++|+|..+...
T Consensus 74 ~~Y~~~~G~-----~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~----Vlv~~P~y~~~~~~ 144 (420)
T d1vp4a_ 74 LQYSTTEGD-----PVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESY----CVLDDPAYLGAINA 144 (420)
T ss_dssp TSCCCTTCC-----HHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCE----EEEEESCCHHHHHH
T ss_pred cCCCCCcCC-----HHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccc----cccccccccchhHH
Confidence 469999998 999999999876 45666555679999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcccccc----------------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeec
Q 018172 104 TDYLRSGLYKWDGDANTFDK----------------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~----------------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~a 163 (360)
++..|++++.++.+.+++.. ...+.++++++||||||.++++ .+.++|+++++++|+||+
T Consensus 145 ~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~ 224 (420)
T d1vp4a_ 145 FRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDP 224 (420)
T ss_dssp HHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHhhhcccccccccccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccch
Confidence 99999999999877665532 1234456789999999999983 556788889999999999
Q ss_pred ccCCCCCc-----C--CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhccc
Q 018172 164 YYWPQYTP-----I--TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 164 y~~~~~~~-----~--~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
|.+..+.. . ....+++++++|+||.++ +|+|+||+++ ++++++.+.+.......+.+...|.+++..+..
T Consensus 225 y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~-~G~RiG~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~- 301 (420)
T d1vp4a_ 225 YGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAG-SKEFIRKIVQAKQSADLCSPAITHRLAARYLER- 301 (420)
T ss_dssp STTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEEC-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH-
T ss_pred hhhccccCcccccccccccccceeEEeccccccc-cccccccccc-cchhhhhhhhhhhhccccCchhhhhhhhhhccc-
Confidence 98532211 1 135778899999999876 9999999998 899999999988888889999999999887773
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhc----CCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhh
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAE 309 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~ 309 (360)
..+.+++.+.++.++++++.+.+.|.+. +++.+..|.|++ |+|+++++. ..+.++|+++
T Consensus 302 -~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~-------------f~~~~~~~~~d~~~~~~~l~~~ 367 (420)
T d1vp4a_ 302 -YDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGL-------------FIWLTLPEGFDTWEMFEYAKRK 367 (420)
T ss_dssp -SCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSS-------------EEEEECCTTCCTTTTHHHHHHH
T ss_pred -ccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceE-------------EEEEECCCCCCHHHHHHHHHHC
Confidence 3445788888999999999999988765 456666676665 889988754 5677889999
Q ss_pred CeeeeCCCCCCC---CCCeEEEEecC-ChHHHHHHHHHHHHHHhchhcc
Q 018172 310 RIMARGGRRFGA---DAKYARVSMLS-REEIFNIFLERLSAIQGGSISN 354 (360)
Q Consensus 310 gI~~~pg~~f~~---~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~~~~ 354 (360)
||.+.||+.|+. ..+++|||++. ++|++++++++|++++++..++
T Consensus 368 gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~rL~~~l~~~~~~ 416 (420)
T d1vp4a_ 368 KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKE 416 (420)
T ss_dssp TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHhhHh
Confidence 999999999974 35799999976 8899999999999999987543
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=1.3e-42 Score=328.46 Aligned_cols=301 Identities=18% Similarity=0.288 Sum_probs=237.4
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhc-C--CCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVV-D--NAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQY 100 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~-~--~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~ 100 (360)
...|+++.|. ++||+++|+|++.+ | +++++ ++|++|+|+++++..++.+++++||+ |+++.|+|+.+
T Consensus 77 ~~~Y~~~~G~-----~~LR~aiA~~l~~~~~~~~~~~p-e~I~it~G~~~al~~~~~~l~~pGd~----Vlv~~P~y~~~ 146 (431)
T d1m7ya_ 77 LALFQDYHGL-----PAFKKAMVDFMAEIRGNKVTFDP-NHLVLTAGATSANETFIFCLADPGEA----VLIPTPYYPGF 146 (431)
T ss_dssp HHHCCCTTCC-----HHHHHHHHHHHHHHTTTSSCCCG-GGEEEEEHHHHHHHHHHHHHCCTTCE----EEEEESCCTTH
T ss_pred hcCCcCCcCc-----HHHHHHHHHHHHHHhCCCCCCCc-ceEEECCCHHHHHHHHHHHhcCCCCE----EEEeCCCchhH
Confidence 4569999998 99999999998754 3 34555 59999999999999999999999998 99999999999
Q ss_pred HHHHHH-hCCeeeeecCCcc-cccc---------------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEE
Q 018172 101 PAETDY-LRSGLYKWDGDAN-TFDK---------------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLI 159 (360)
Q Consensus 101 ~~~~~~-~g~~~~~~~~~~~-~~~~---------------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li 159 (360)
...+.. .|++++.++.+.+ ++.. ..++++++++|||||||.++++ .+.++|+++++++|
T Consensus 147 ~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI 226 (431)
T d1m7ya_ 147 DRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLI 226 (431)
T ss_dssp HHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCccee
Confidence 988875 5889998887754 3432 2478999999999999999993 45677888999999
Q ss_pred EeecccCC-----CCCcC------------CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCC
Q 018172 160 HDLAYYWP-----QYTPI------------TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVS 222 (360)
Q Consensus 160 ~D~ay~~~-----~~~~~------------~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (360)
+||+|.+. .+.++ ....+++++++|+||.|+++|+|+||+++ +++++........ ...+.+
T Consensus 227 ~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~-~~~~i~~~~~~~~-~~~~~~ 304 (431)
T d1m7ya_ 227 SDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYS-NDDMVVAAATKMS-SFGLVS 304 (431)
T ss_dssp EECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEE-SCHHHHHHHHHHG-GGSCCC
T ss_pred ecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceecc-chhhhHHHHHHHh-cccccc
Confidence 99999842 11111 12346799999999999999999999999 5555444433332 335566
Q ss_pred hHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc----
Q 018172 223 KESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---- 298 (360)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 298 (360)
...|.++++.+... ...+.++++.++.++++++.+.+.|++. ++.+..|.+++ |+|++++.
T Consensus 305 ~~~~~~~~a~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~~~~p~gg~-------------f~w~~l~~~~~~ 369 (431)
T d1m7ya_ 305 SQTQHLLSAMLSDK-KLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGL-------------FCWVDMRHLLRS 369 (431)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSS-------------EEEEECGGGSSS
T ss_pred ccccchhhhhhccc-hhhhhhhhhhhhhhhhhhhhhhhhhhcC-CcEEecCCcee-------------EEEEECcccccc
Confidence 67777776655421 1224789999999999999999999886 56777777666 77887753
Q ss_pred -----h-HHHHHHHHhhCeeeeCCCCCCC-CCCeEEEEecC-ChHHHHHHHHHHHHHHhch
Q 018172 299 -----D-EDCEKLLRAERIMARGGRRFGA-DAKYARVSMLS-REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 299 -----~-~~~~~~l~~~gI~~~pg~~f~~-~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~ 351 (360)
. +.+.++++++||.+.||+.|+. .++|+|||++. +++++++++++|++++++.
T Consensus 370 ~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 370 NTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp SSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence 1 4466778888999999999986 57899999976 7889999999999999764
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.3e-42 Score=319.72 Aligned_cols=301 Identities=18% Similarity=0.235 Sum_probs=247.4
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP 101 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~ 101 (360)
..+.|++..|. ++||+++++++.. +|..++++ +|++|+|+++++..++..++++||. |+++.|+|+.+.
T Consensus 56 ~~~~Y~~~~G~-----~~LR~aia~~~~~~~g~~~~~~-~I~it~G~~~~l~~~~~~l~~~gd~----V~i~~P~y~~~~ 125 (389)
T d2gb3a1 56 EVVYYSHSAGI-----WELREAFASYYKRRQRVDVKPE-NVLVTNGGSEAILFSFAVIANPGDE----ILVLEPFYANYN 125 (389)
T ss_dssp SSCCCCCTTCC-----HHHHHHHHHHHHHTSCCCCCGG-GEEEESHHHHHHHHHHHHHCCTTCE----EEEEESCCTHHH
T ss_pred CCCCCCCCcCC-----HHHHHHHHHHHHHhcCCCcccc-eEEecccccccccccccccccCCCe----EEEeCCCCcccc
Confidence 34679999998 9999999999874 47777765 8999999999999999999999998 999999999999
Q ss_pred HHHHHhCCeeeeecCCcccccc---------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC
Q 018172 102 AETDYLRSGLYKWDGDANTFDK---------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
..+...|.+++.++.+.++... .+++++++++|||||||.+++ +.+.++|+++++++|+||+|.+..
T Consensus 126 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~ 205 (389)
T d2gb3a1 126 AFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIV 205 (389)
T ss_dssp HHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred ccccccCccccccccccccccchhhhhhhhcccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccc
Confidence 9999999999988876543322 468899999999999999999 356678888999999999998522
Q ss_pred -----CCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 169 -----YTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 169 -----~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
........++++++.|+||.++++|+|+||++++++.+.+.+.... ....+.+.+.|.++..++.. . +.+
T Consensus 206 ~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~l~~--~--~~~ 280 (389)
T d2gb3a1 206 FRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLA-QGRLAPPLLEQIGSVGLLNL--D--DSF 280 (389)
T ss_dssp CSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHH-HHSCCCCHHHHHHHHHHHTC--C--HHH
T ss_pred cccccccccccccccccccccccccccCcccceeeeeccchhHHHHHhhhh-hccccccccccccccccccc--c--chh
Confidence 2223356788999999999999999999999996556665555544 35667778888887777752 2 489
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHh-----hCeeeeC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRA-----ERIMARG 315 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~-----~gI~~~p 315 (360)
++++++.++++++.+.+.|+++++.....|.+++ |+|++++.. +++..+|.+ +||.+.|
T Consensus 281 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~-------------~~~~~lp~~~~~~~~~~ll~e~~l~~~~v~v~p 347 (389)
T d2gb3a1 281 FDFVRETYRERVETVLKKLEEHGLKRFTKPSGAF-------------YITAELPVEDAEEFARWMLTDFNMDGETTMVAP 347 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSS-------------EEEEECSSSCHHHHHHHHHHSCCBTTEEEECEE
T ss_pred cccccccccccchhhhhhhhhhccccccCCCceE-------------EEEEeCCCCCHHHHHHHHHHhhhhhhCCEEEEe
Confidence 9999999999999999999999877767776665 788887643 455556554 5789999
Q ss_pred CCCCCC----CCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 316 GRRFGA----DAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 316 g~~f~~----~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
|+.|+. ..+++||+++.++|++++++++|.+.++++
T Consensus 348 g~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~f 387 (389)
T d2gb3a1 348 LRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMF 387 (389)
T ss_dssp GGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 998864 357999999889999999999999998764
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=2.5e-42 Score=322.99 Aligned_cols=292 Identities=15% Similarity=0.204 Sum_probs=234.0
Q ss_pred HHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 39 PELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 39 ~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
++||+++++|+. .+|.++++ ++|++|+|+++++..++.+++++||+ |+++.|.|.++...+...|.+.+.++.+
T Consensus 69 ~~Lr~aia~~~~~~~g~~~~~-~~I~vt~G~~~al~~~~~~~~~pgd~----vi~~~p~~~~~~~~~~~~g~~~v~~~~~ 143 (394)
T d1c7na_ 69 EEYKKTVKKWMKDRHQWDIQT-DWIINTAGVVPAVFNAVREFTKPGDG----VIIITPVYYPFFMAIKNQERKIIECELL 143 (394)
T ss_dssp HHHHHHHHHHHHHHHCCCCCG-GGEEEESSHHHHHHHHHHHHCCTTCE----EEECSSCCTHHHHHHHTTTCEEEECCCE
T ss_pred HHHHHHHHHHHHHhcCCCCCC-cceEeeccchhhhhhhhccccccccc----cccccCcccchhhHHhhhhhcccccccc
Confidence 999999999986 44777777 58999999999999999999999998 9999999999999999999999887654
Q ss_pred ccc--c----------ccCCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCCC-----CCcCC---
Q 018172 118 ANT--F----------DKNNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWPQ-----YTPIT--- 173 (360)
Q Consensus 118 ~~~--~----------~~~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~~-----~~~~~--- 173 (360)
..+ + ..+++++++++++||||||.++++ .+.++|++++++||+||+|.+.. ..+..
T Consensus 144 ~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~ 223 (394)
T d1c7na_ 144 EKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSID 223 (394)
T ss_dssp EETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred cccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhh
Confidence 221 1 114679999999999999999993 45567888999999999998521 11111
Q ss_pred -CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHH
Q 018172 174 -GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMS 252 (360)
Q Consensus 174 -~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 252 (360)
...++++++.|+||.|+++|+|+||++++++.+.+.+.........+.....+.+++.... ...+.+.++.++.++
T Consensus 224 ~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~ 300 (394)
T d1c7na_ 224 EQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICY---KECGKWLDGCIKVID 300 (394)
T ss_dssp HHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHH---HHCHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccccccccChhhhhhhhhhhhhccccccccccchhhhhhh---cchhhhhcccccccc
Confidence 2346889999999999999999999999778888888877766555555555544444332 122488999999999
Q ss_pred HHHHHHHHHHHhc-CCcccCCCCCcccccccccCCCCCCcccccCCc----h-HHHHHHHHhhCeeeeCCCCCCC-CCCe
Q 018172 253 ERWNMLRQVIRQS-GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----D-EDCEKLLRAERIMARGGRRFGA-DAKY 325 (360)
Q Consensus 253 ~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~gI~~~pg~~f~~-~~~~ 325 (360)
++++.+.+.++.. .++.+..|+|++ |+|++++. . +.+..+|+++||.++||+.||. .++|
T Consensus 301 ~~~~~~~~~l~~~~~~~~~~~p~g~~-------------~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~ 367 (394)
T d1c7na_ 301 KNQRIVKDFFEVNHPEIKAPLIEGTY-------------LQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGF 367 (394)
T ss_dssp HHHHHHHHHHHHHCTTSBCCCCSBSS-------------EEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTE
T ss_pred hhhhhhhhhhhccccceeecCCCcee-------------EEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCE
Confidence 9999999999865 456666677666 78887753 2 4556677778999999999985 5789
Q ss_pred EEEEecCChHHHHHHHHHHHHHHhch
Q 018172 326 ARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 326 ~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
+|||++.++|++++++++|++++++.
T Consensus 368 iRis~~~~~e~i~eal~rl~~~l~~L 393 (394)
T d1c7na_ 368 ERINLAAPSSVIQESLERLNKALKDL 393 (394)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 99999888999999999999998764
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=6.9e-42 Score=320.93 Aligned_cols=302 Identities=18% Similarity=0.133 Sum_probs=252.7
Q ss_pred ccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..|. ++||+++++|++ ..|.+++++ +|++|+|+++++..++.+++++||+ |++++|+|..+...
T Consensus 65 ~~Y~~~~G~-----~~lR~aia~~l~~~~g~~~~~~-~I~it~G~~~al~~~~~~l~~~gd~----v~~~~P~y~~~~~~ 134 (403)
T d1wsta1 65 LQYGTTKGF-----TPLRLALARWMEKRYDIPMSKV-EIMTVAGSQQALDLIGRVFLNPGDP----IVVEAPTYLAAIQA 134 (403)
T ss_dssp HSCCCSSCC-----HHHHHHHHHHHHHHHCCCCTTC-EEEEESSHHHHHHHHHHHHCCTTCE----EEEEESCCHHHHHH
T ss_pred cCCCCCcCC-----HHHHHHHHHHHHHHhCCCCChH-HeeecccchHHHHHHHHHHhhcCCc----cccCCCcchhhhHH
Confidence 459999998 999999999986 457777765 8999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCcccccc--------------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeeccc
Q 018172 104 TDYLRSGLYKWDGDANTFDK--------------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYY 165 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~--------------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~ 165 (360)
+..+|.+++.++.+.++... ...+.++++++||||||.+++. .+.++|++|+++||+||+|.
T Consensus 135 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~ 214 (403)
T d1wsta1 135 FKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYS 214 (403)
T ss_dssp HHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred HhhccccceeEeecccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchh
Confidence 99999999998876433221 2455678889999999999993 45678888999999999998
Q ss_pred CCC-----CCcC--CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCC
Q 018172 166 WPQ-----YTPI--TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD 238 (360)
Q Consensus 166 ~~~-----~~~~--~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (360)
+.. ..++ .+..+++++++|+||.++ +|+|+||+++ ++++++.+.........+.+...|.+.++++.. .
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~G~RiG~~i~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 290 (403)
T d1wsta1 215 ELRYSGEPTPPIKHFDDYGRVIYLGTFSKILA-PGFRIGWVAA-HPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVEN--G 290 (403)
T ss_dssp TCBCSSCCCCCGGGGCSSSCEEEEEESTTTTC-GGGCCEEEEE-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHT--T
T ss_pred heecCCCCCCcccccCCCCcEEEEccccceec-Cccccccccc-chHHHHHHHHHHhhhccccccchhhhHHhhhhc--c
Confidence 421 2222 246789999999999997 9999999999 899999998888777888999999888887763 3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhc--CCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeee
Q 018172 239 DYPNFFEYGRRLMSERWNMLRQVIRQS--GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMA 313 (360)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~ 313 (360)
..+.++.+.++.++++++.+.+.|.+. .++.+..|.|++ |+|+++++. +.+.++|.++||.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~-------------~~~~~~~~~~~~~~~~~~l~~~gV~v 357 (403)
T d1wsta1 291 YLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGM-------------FVRVTLPEGIDTKLMMERAVAKGVAY 357 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSS-------------EEEEECCTTCCTTTTHHHHHHTTEEC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCcee-------------EEEEECCCCCCHHHHHHHHHHCCEEE
Confidence 345888999999999999999999886 345556666655 889988864 66788888999999
Q ss_pred eCCCCCCC---CCCeEEEEecC-ChHHHHHHHHHHHHHHhchhc
Q 018172 314 RGGRRFGA---DAKYARVSMLS-REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 314 ~pg~~f~~---~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~~~~ 353 (360)
+||+.|+. .++++||+++. +++++++++++|++++++..+
T Consensus 358 ~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~~k 401 (403)
T d1wsta1 358 VPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEMK 401 (403)
T ss_dssp EEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EechhhcCCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999964 36799999975 899999999999999987644
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1e-41 Score=315.90 Aligned_cols=292 Identities=21% Similarity=0.257 Sum_probs=247.4
Q ss_pred cccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 24 MSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 24 ~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
.+.|+++.|. ++||++++++++. ++++|++|+|++++++.++..++++||. |+++.|+|..+...
T Consensus 54 ~~~Y~~~~G~-----~elr~aiA~~~~~------~~~~Iiit~G~~~al~~~~~~l~~~~d~----v~~~~p~~~~~~~~ 118 (368)
T d1v2da_ 54 QDQYAPPAGL-----PALREALAEEFAV------EPESVVVTSGATEALYVLLQSLVGPGDE----VVVLEPFFDVYLPD 118 (368)
T ss_dssp SCSCCCTTCC-----HHHHHHHHHHHTS------CGGGEEEESSHHHHHHHHHHHHCCTTCE----EEEEESCCTTHHHH
T ss_pred ccCCCCCcCC-----HHHHHHHHhhccc------CCcceeeccchHHHHHHHhhcccccccc----ccccCCcchhhhhH
Confidence 3579999998 9999999999986 6679999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCc--c--cccc-------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCC
Q 018172 104 TDYLRSGLYKWDGDA--N--TFDK-------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~--~--~~~~-------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
+...|.+++.++++. + .++. .++++++++++||||||.+++ +.+.++|+++++++|.|++|.+..
T Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~ 198 (368)
T d1v2da_ 119 AFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELY 198 (368)
T ss_dssp HHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred HHhcCCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhc
Confidence 999999988776542 1 1211 467899999999999999998 356678888999999999998422
Q ss_pred CC-----cCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 169 YT-----PITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 169 ~~-----~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
.. ......++.+++.|+||.++++|+|+||+++ ++++++.+.+.......+.+.+.|.++.+++..... ..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~--~~~ 275 (368)
T d1v2da_ 199 YGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVG-PKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR--EGF 275 (368)
T ss_dssp SSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEEC-CTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH--TTH
T ss_pred ccccccccccccccccceeecccccccccccccccccc-cccccchhhhhhhccccccccccccccccccccccc--hhh
Confidence 11 1224667888999999999999999999998 899999999988888999999999999888774322 378
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCC--
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGA-- 321 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~-- 321 (360)
+++.++.++++++++.+.|+++ ++.+..|.+++ |+|+++++ .+..++|+++||.++||+.|+.
T Consensus 276 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~p~g~~-------------~~~~~l~~-~~~~~ll~~~gI~v~pg~~F~~~~ 340 (368)
T d1v2da_ 276 YEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTY-------------FLMAELPG-WDAFRLVEEARVALIPASAFYLED 340 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSS-------------EEEEECTT-CCHHHHHHHTCEECEEGGGGCSSS
T ss_pred HHHHHHHHHHhhhhhhhhHHhc-CcEEecCCcee-------------EEEEeCCc-cHHHHHHHhCCEEEEechhhCCCC
Confidence 9999999999999999999998 46666666655 88999876 4455688999999999999964
Q ss_pred -CCCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 322 -DAKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 322 -~~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
.++++|||++.++|++++++++|++++
T Consensus 341 ~~~~~iRis~~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 341 PPKDLFRFAFCKTEEELHLALERLGRVV 368 (368)
T ss_dssp CCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence 468999999889999999999999875
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-40 Score=307.17 Aligned_cols=287 Identities=18% Similarity=0.202 Sum_probs=231.8
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
.+++|+++.+ .+||++++++++. ++++|++|+|+++++..++.+++++||. .|+++.|+|..+..
T Consensus 49 ~l~rYPd~~~------~~Lr~~ia~~~gv------~pe~I~it~Gs~eai~~~~~~~~~pgd~---~Vl~~~P~y~~~~~ 113 (354)
T d1fg7a_ 49 TLNRYPECQP------KAVIENYAQYAGV------KPEQVLVSRGADEGIELLIRAFCEPGKD---AILYCPPTYGMYSV 113 (354)
T ss_dssp CTTSCCCSSC------HHHHHHHHHHHTS------CGGGEEEESHHHHHHHHHHHHHCCTTTC---EEEECSSSCTHHHH
T ss_pred HHhcCCCCcH------HHHHHHHHHHhCC------ChHHeeeccCchHHHHHHHHHhhccccc---cccccccccccchh
Confidence 3467876653 8999999999987 6779999999999999999999999985 38889999999999
Q ss_pred HHHHhCCeeeeecCCcc-cccc------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCC----
Q 018172 103 ETDYLRSGLYKWDGDAN-TFDK------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWP---- 167 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~-~~~~------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~---- 167 (360)
.++..|.+++.++.+.+ .++. ..++++|++++||||||.++++ .+..+++ ++.++|+||+|.+.
T Consensus 114 ~~~~~g~~v~~~~~~~~~~~d~~~l~~~~~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~ 192 (354)
T d1fg7a_ 114 SAETIGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQA 192 (354)
T ss_dssp HHHHHTCEEEECCCCTTSCCCHHHHHTSCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGG
T ss_pred hhhccCceeeccccccccccchhhhhhcccccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhcccc
Confidence 99999999998876543 2221 2589999999999999999984 2334555 78899999998852
Q ss_pred CCCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHH
Q 018172 168 QYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYG 247 (360)
Q Consensus 168 ~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (360)
.........++++++.||||.||++|+|+||+++ ++++++.+.+... .++.+.+.|.++.+++. +....+....
T Consensus 193 ~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~-~~~~i~~l~~~~~--~~~~~~~~~~~a~~~~~---~~~~~~~~~~ 266 (354)
T d1fg7a_ 193 SLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLA-NEEVINLLMKVIA--PYPLSTPVADIAAQALS---PQGIVAMRER 266 (354)
T ss_dssp CSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEE-CHHHHHHHHHHSC--SSCSCHHHHHHHHHHTS---HHHHHHHHHH
T ss_pred ccchhhcccccceEEeCCccccCCCccccccccc-cchhhhhhhhhcC--ccchhhHHHHHHHHHHh---hhcccccccc
Confidence 2333456788899999999999999999999998 8999999987764 45677788877777654 2212556666
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEE
Q 018172 248 RRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYAR 327 (360)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R 327 (360)
.+.+.++|+.+.+.+.++++.....|. .++|+|+++++.+.+.+.|.++||.++++..|...++|+|
T Consensus 267 ~~~~~~~r~~l~~~l~~~~~~~~~~p~-------------~~~f~~~~~~~~~~~~~~L~~~gIlvr~~~~~~~~~~~lR 333 (354)
T d1fg7a_ 267 VAQIIAEREYLIAALKEIPCVEQVFDS-------------ETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLR 333 (354)
T ss_dssp HHHHHHHHHHHHHHHHHSTTEEEECCC-------------SSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTCTTEEE
T ss_pred chhhhhHHHHHHHHHHhCCCcceeCCC-------------CceEEEEeCCCHHHHHHHHHHCCcEEecCCCCCCCCCEEE
Confidence 777889999999999999765444443 4459999999887788888999999999988755578999
Q ss_pred EEecCChHHHHHHHHHHH
Q 018172 328 VSMLSREEIFNIFLERLS 345 (360)
Q Consensus 328 ~s~~~~~e~~~~~~~~l~ 345 (360)
||+ .++|++++++++|+
T Consensus 334 isi-gt~ee~~~~l~aLk 350 (354)
T d1fg7a_ 334 ITV-GTREESQRVIDALR 350 (354)
T ss_dssp EEC-CCHHHHHHHHHHHH
T ss_pred EEe-CCHHHHHHHHHHHh
Confidence 998 57888899999886
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-40 Score=307.21 Aligned_cols=300 Identities=14% Similarity=0.144 Sum_probs=230.6
Q ss_pred ccccCCCCccccccHHHHHHHHHHHh-hcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHH-VVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE 103 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~-~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~ 103 (360)
..|++..| +++|+++++++. ++|.+++++ +|++|+|+++++..++.+++++||+ |++++|+|.++..+
T Consensus 30 ~~Y~~~~g------~~lr~~ia~~~~~~~g~~~~~~-~i~it~G~~~~l~~~~~~l~~~gd~----Vlv~~P~y~~~~~~ 98 (361)
T d1d2fa_ 30 FGYSRWKN------DEFLAAIAHWFSTQHYTAIDSQ-TVVYGPSVIYMVSELIRQWSETGEG----VVIHTPAYDAFYKA 98 (361)
T ss_dssp CCCCCSCC------HHHHHHHHHHHHHHSCCCCCGG-GEEEESCHHHHHHHHHHHSSCTTCE----EEEEESCCHHHHHH
T ss_pred CCCCCCCC------HHHHHHHHHHHHHHhCCCCCcc-eEEEeCCHHHHHHHHhhhccccccc----cccccccccchhHH
Confidence 46887776 679999999875 457777775 8999999999999999999999998 99999999999999
Q ss_pred HHHhCCeeeeecCCc--ccccc----------CCCeeEEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCC
Q 018172 104 TDYLRSGLYKWDGDA--NTFDK----------NNGAYIEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWP 167 (360)
Q Consensus 104 ~~~~g~~~~~~~~~~--~~~~~----------~~~~~~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~ 167 (360)
++..|.+++.++.+. ++... +++++++++++||||||.+++ +.+.++|+++++++|+||+|.+.
T Consensus 99 ~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~ 178 (361)
T d1d2fa_ 99 IEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDM 178 (361)
T ss_dssp HHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTC
T ss_pred HHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhhhhhhhheeeeeccccccc
Confidence 999999998887542 22211 468999999999999999998 35667788899999999999853
Q ss_pred CC-----Cc-CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHH-HHHhhcccc-CChHHHHHHHHHhcccCCC
Q 018172 168 QY-----TP-ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMT-RFIELGSIG-VSKESQLRAAKILGIVSDD 239 (360)
Q Consensus 168 ~~-----~~-~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~-~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 239 (360)
.+ .+ .....++++++.|+||.++++|+|+||++..+....+... ........+ ++...+.++...+.. .
T Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~- 255 (361)
T d1d2fa_ 179 VWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ--G- 255 (361)
T ss_dssp BCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH--C-
T ss_pred ccccccccccccccccccccccccccccccccccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhc--c-
Confidence 21 11 1235678899999999999999999999875555545443 333333232 333344333333332 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcccccccccCCCCCCcccccCC----ch-HHHHHHHHhhCeee
Q 018172 240 YPNFFEYGRRLMSERWNMLRQVIRQS-GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK----ED-EDCEKLLRAERIMA 313 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~l~~~gI~~ 313 (360)
+.+.++.+..++++++.+.+.+.+. +++.+..|.|++ |+|++++ +. +.+.++++++||.+
T Consensus 256 -~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~-------------~~~~~l~~~~~~~~~~~~~Ll~~~gv~v 321 (361)
T d1d2fa_ 256 -APWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTY-------------LAWLDLRPLNIDDNALQKALIEQEKVAI 321 (361)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCS-------------EEEEECGGGCCCHHHHHHHHHHTTCEEC
T ss_pred -chhhhcccccchhhHHHHHHHhhhhcccccccccCcee-------------EEEEEccCCCCCHHHHHHHHHHhCCEEE
Confidence 3788899999999999998887654 556666666665 6777764 33 55566778889999
Q ss_pred eCCCCCCC-CCCeEEEEecCChHHHHHHHHHHHHHHhchh
Q 018172 314 RGGRRFGA-DAKYARVSMLSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 314 ~pg~~f~~-~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
+||+.|+. +.+|+|+|++.++|++++++++|++++++.|
T Consensus 322 ~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 322 MPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp EEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred EeccccCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 99999976 4679999998789999999999999997643
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=3.1e-39 Score=297.77 Aligned_cols=286 Identities=19% Similarity=0.254 Sum_probs=231.0
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH
Q 018172 23 LMSYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA 102 (360)
Q Consensus 23 ~~~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~ 102 (360)
..++|+++. . .+||++++++++. ++++|++|+|+++++..++..+.+ +. +++..|.|..+..
T Consensus 50 ~~~~Yp~~~-~-----~~Lr~aia~~~~v------~~~~I~~~~g~~~~~~~~~~~~~~--~~----~~v~~p~~~~~~~ 111 (355)
T d1lc5a_ 50 CIERYPDAD-Y-----FHLHQALARHHQV------PASWILAGNGETESIFTVASGLKP--RR----AMIVTPGFAEYGR 111 (355)
T ss_dssp GGGSCCCTT-C-----HHHHHHHHHHHTS------CGGGEEEESSHHHHHHHHHHHHCC--SE----EEEEESCCTHHHH
T ss_pred HhccCCCCC-h-----HHHHHHHHHHhCC------CHHHEEecccHHHHHHHHHhhhcc--cc----ccccCCccceecc
Confidence 445686553 4 8999999999986 667999999999999887776653 33 6677899999999
Q ss_pred HHHHhCCeeeeecCCcc-cccc--------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCC--
Q 018172 103 ETDYLRSGLYKWDGDAN-TFDK--------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWP-- 167 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~~~-~~~~--------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~-- 167 (360)
.....+.+++.++++.+ ++.. .++++++++++||||||.++++ .+.++|+++++++|+||+|.+.
T Consensus 112 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~ 191 (355)
T d1lc5a_ 112 ALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIP 191 (355)
T ss_dssp HHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGST
T ss_pred ccccccccceeeeeeccCCccceeeeeeccccccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeee
Confidence 99999999999987643 3332 4689999999999999999983 4456777899999999999842
Q ss_pred ---CCCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHH
Q 018172 168 ---QYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFF 244 (360)
Q Consensus 168 ---~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (360)
.........++++++.||||.++++|+|+||++++++.+.+.+++.+ .+.+.+.++|.++.++++ +. .++
T Consensus 192 ~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~---~~--~~~ 264 (355)
T d1lc5a_ 192 HETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQ--MPWSVNALAALAGEVALQ---DS--AWQ 264 (355)
T ss_dssp TCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHS--CTTCSCHHHHHHHHHGGG---CH--HHH
T ss_pred ecccccccccccccceeecccccccccccccccceeccchhhhHHHHhhc--CCcccccccccccccccc---cc--chh
Confidence 22333456788999999999999999999999995566666666544 456888999999998887 32 789
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCCCC-C
Q 018172 245 EYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRFGA-D 322 (360)
Q Consensus 245 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f~~-~ 322 (360)
.+.++.++++++++.+.|.+++++.+. | +.++|+|++++.. ..+.+.|.++||.++||..|+. +
T Consensus 265 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-p-------------~~~~f~~~~~~~~~~~~~~~L~~~gv~vr~~~~f~~~~ 330 (355)
T d1lc5a_ 265 QATWHWLREEGARFYQALCQLPLLTVY-P-------------GRANYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLD 330 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTEEEC-C-------------CSSSEEEEEESCTTCCHHHHHHTTTEECEECTTSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEC-C-------------CCCEEEEEECCCCHHHHHHHHHHCCcEEEeCccCCCCC
Confidence 999999999999999999998766542 3 3345889988765 6667778899999999998854 6
Q ss_pred CCeEEEEecCChHHHHHHHHHHHHHH
Q 018172 323 AKYARVSMLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 323 ~~~~R~s~~~~~e~~~~~~~~l~~~~ 348 (360)
++|+|||+ .+++++++++++|++++
T Consensus 331 ~~~iRis~-~~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 331 SRYYRVAI-RSAAQNERLLAALRNVL 355 (355)
T ss_dssp TTEEEEEC-CCHHHHHHHHHHHHHHC
T ss_pred CCEEEEEe-CCHHHHHHHHHHHHHhC
Confidence 78999998 47899999999999875
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.7e-39 Score=294.72 Aligned_cols=274 Identities=18% Similarity=0.240 Sum_probs=225.0
Q ss_pred ccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY 106 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~ 106 (360)
|.+..|. ++||++++++++.+++ ++++|++|+|+++++++++.. ||+ |++++|+|..+...++.
T Consensus 52 ~yp~~g~-----~~Lr~aia~~~~~~~v---~~d~I~it~G~~~~l~~l~~~----~d~----v~i~~P~y~~~~~~~~~ 115 (334)
T d2f8ja1 52 IYYDSPD-----EELIEKILSYLDTDFL---SKNNVSVGNGADEIIYVMMLM----FDR----SVFFPPTYSCYRIFAKA 115 (334)
T ss_dssp SCCCSSC-----HHHHHHHHHHHTCSSC---CGGGEEEEEHHHHHHHHHHHH----SSE----EEECSSCCHHHHHHHHH
T ss_pred CCCCCCc-----HHHHHHHHHHhcccCC---CcceEEecCcchhHHHHHhhh----ccc----cccccccccccccchhc
Confidence 3355677 9999999999987663 456999999999999887654 577 99999999999999999
Q ss_pred hCCeeeeecCCcccccc---CCCeeEEEEcCCCCCCcccchH-HHHHHhhhcCcEEEEeecccCCC---CCcCCCCCCcc
Q 018172 107 LRSGLYKWDGDANTFDK---NNGAYIEVVNSPNNPDGTIREA-VLAKVNRSAEGKLIHDLAYYWPQ---YTPITGAADHD 179 (360)
Q Consensus 107 ~g~~~~~~~~~~~~~~~---~~~~~~i~~~~p~NPtG~~~~~-~~~~~~~~~~~~li~D~ay~~~~---~~~~~~~~~~~ 179 (360)
+|++++.++.+.+.... .+++++++++|||||||.++++ .+.++++ +++++|+||+|.+.. ........+++
T Consensus 116 ~g~~~v~v~~~~~~~~~~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~~~~-~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~ 194 (334)
T d2f8ja1 116 VGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFEREEIERILK-TGAFVALDEAYYEFHGESYVDFLKKYENL 194 (334)
T ss_dssp HTCCEEECCCCTTSCCCCCCCCTTEEEEEESSCTTTCCCCCHHHHHHHHT-TTCEEEEECTTGGGTCCCCGGGGGTCSSE
T ss_pred cCCccccccccccccccccccccceEEEecccccccceeecHHHhhcccc-ceeEEeecccchhhcccccccccccCceE
Confidence 99999999987654333 3678999999999999999994 5556666 899999999998532 22233567899
Q ss_pred EEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHH
Q 018172 180 IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLR 259 (360)
Q Consensus 180 i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (360)
++++|+||+++++|+|+||+++ ++++++.+...+. ..+.+.++|.++.+.+. + .+++++.++.++++|+.+.
T Consensus 195 i~~~S~SK~~~~~G~R~G~~~~-~~~~i~~l~~~~~--~~~~s~~~~~~a~~~l~---~--~~~~~~~~~~~~~~r~~l~ 266 (334)
T d2f8ja1 195 AVIRTFSKAFSLAAQRVGYVVA-SEKFIDAYNRVRL--PFNVSYVSQMFAKVALD---H--REIFEERTKFIVEERERMK 266 (334)
T ss_dssp EEEEESTTTSSCTTTCEEEEEE-CHHHHHHHHHHSC--TTCSCHHHHHHHHHHHH---T--HHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCccccchhhhhhhhccc-chHHHHHHHHhhc--ccccchhhhhhcccccc---c--ccchhhHHHHHHHHHHHHH
Confidence 9999999999999999999999 8999999988864 45788899998888776 3 2889999999999999999
Q ss_pred HHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch--HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHHH
Q 018172 260 QVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED--EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEIF 337 (360)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~~ 337 (360)
+.|++++ +.+..+ .++|+|+.++.. +++.+.|.++||.++++ ++|+|+|+ .++|++
T Consensus 267 ~~L~~~g-~~~~~~--------------~g~f~~~~~~~~~~~~~~~~L~~~GI~vr~~------~~~vRis~-g~~ee~ 324 (334)
T d2f8ja1 267 SALREMG-YRITDS--------------RGNFVFVFMEKEEKERLLEHLRTKNVAVRSF------REGVRITI-GKREEN 324 (334)
T ss_dssp HHHHHHT-CEECCC--------------CSSEEEEECCHHHHHHHHHHHHHTTEECEEE------TTEEEEEC-CCHHHH
T ss_pred HHHHHCC-CeECCC--------------CceEEEEECCCCCHHHHHHHHHHCCCEECCC------CCeEEEEc-CCHHHH
Confidence 9999984 444333 334778877754 77888889999999863 57999998 577788
Q ss_pred HHHHHHHHHH
Q 018172 338 NIFLERLSAI 347 (360)
Q Consensus 338 ~~~~~~l~~~ 347 (360)
++++++|+++
T Consensus 325 ~~l~~~l~~f 334 (334)
T d2f8ja1 325 DMILRELEVF 334 (334)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999998863
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=5.5e-37 Score=287.15 Aligned_cols=291 Identities=14% Similarity=0.061 Sum_probs=223.3
Q ss_pred cccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCCh-----HHHHHHHHHhhcCCCCCCCceEEEeCCCCCCc
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGS-----TQLYQAALYALSSPGGPEPISVVSAAPYYSQY 100 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~-----t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~ 100 (360)
.|++..|. ++||+++++++..++.....+++|+++.|+ .+++..++..++++||+ |++++|+|+.|
T Consensus 66 ~Y~~~~G~-----~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~----Vlv~~P~y~~y 136 (401)
T d7aata_ 66 EYLPIAGL-----ADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRD----VYLPKPSWGNH 136 (401)
T ss_dssp CCCCTTCC-----HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCE----EEEEESCCTTH
T ss_pred CCCCCCCC-----HHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCce----EEEecCCCcch
Confidence 59999998 999999999865444333334467665443 25677788889999999 99999999999
Q ss_pred HHHHHHhCCeeeeecCCccc-ccc------------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeec
Q 018172 101 PAETDYLRSGLYKWDGDANT-FDK------------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 101 ~~~~~~~g~~~~~~~~~~~~-~~~------------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~a 163 (360)
..+++..|++++.++.+.++ +.. .++++++++++||||||.++++ .+.++|+++++++|+||+
T Consensus 137 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~ 216 (401)
T d7aata_ 137 TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMA 216 (401)
T ss_dssp HHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred hhHHHHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEecc
Confidence 99999999999999865322 111 3688999999999999999993 566788999999999999
Q ss_pred ccCCCCCc----------CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHH-------HHhhccccCChHHH
Q 018172 164 YYWPQYTP----------ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTR-------FIELGSIGVSKESQ 226 (360)
Q Consensus 164 y~~~~~~~----------~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~ 226 (360)
|.+..+.. ......+++++.|+||.++++|+|+||+++ +....+.+.+ .......+.+.+.|
T Consensus 217 Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 295 (401)
T d7aata_ 217 YQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTV-ICRDAEEAKRVESQLKILIRPMYSNPPMNGA 295 (401)
T ss_dssp CTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEE-ECSSHHHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred chhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeec-chHHHHHHHHHHHHHHHHhhccccccchHHH
Confidence 98643322 113556788999999999999999999998 4444443322 22334567888889
Q ss_pred HHHHHHhccc--CCCchhHHHHHHHHHHHHHHHHHHHHHhcCC---cccCCCCCcccccccccCCCCCCcccccCCchHH
Q 018172 227 LRAAKILGIV--SDDYPNFFEYGRRLMSERWNMLRQVIRQSGV---FGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDED 301 (360)
Q Consensus 227 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (360)
.+++..+... ...+..+++..+++++++|+.+.+.|++++. +....|.++ +|+|+.++. ++
T Consensus 296 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G-------------~F~~~~ls~-e~ 361 (401)
T d7aata_ 296 RIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIG-------------MFCFTGLKP-EQ 361 (401)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCS-------------SEEECCCCH-HH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECCCCe-------------EEEecCCCH-HH
Confidence 8888877621 1123467788899999999999999999842 122234444 488988754 77
Q ss_pred HHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHHh
Q 018172 302 CEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQG 349 (360)
Q Consensus 302 ~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~ 349 (360)
+.++++++||.+.||. |||++. ++++++++.++|.++++
T Consensus 362 ~~~L~~e~gV~~~pg~---------Ris~a~~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 362 VERLTKEFSIYMTKDG---------RISVAGVASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp HHHHHHHHCEECCTTC---------EEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred HHHHHHhCCEEECCCc---------EEEeccCCHHHHHHHHHHHHHHhC
Confidence 8888899999999973 999986 89999999999999874
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=2.8e-35 Score=276.24 Aligned_cols=294 Identities=12% Similarity=0.094 Sum_probs=219.8
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEc--CChHHHHHHH--HHhhcCCCCCCCceEEEeCCCCCCc
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIG--TGSTQLYQAA--LYALSSPGGPEPISVVSAAPYYSQY 100 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t--~G~t~~l~~~--~~~l~~~gd~~~~~vl~~~p~~~~~ 100 (360)
+.|++..|. ++||+++++++...+.....++.++++ .|+..++..+ +..+.++||. |++++|+|+.|
T Consensus 67 ~~Y~p~~G~-----~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~----Vlip~P~~~~y 137 (412)
T d1yaaa_ 67 HEYLGITGL-----PSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKL----VYLSKPTWANH 137 (412)
T ss_dssp CCCCCTTCC-----HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCC----EEEEESCCTTH
T ss_pred CCCCCCCCC-----HHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCE----EecccccCchh
Confidence 459999998 999999999865444433333333332 3444444443 3345789999 99999999999
Q ss_pred HHHHHHhCCeeeeecCCccc-ccc------------CCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeec
Q 018172 101 PAETDYLRSGLYKWDGDANT-FDK------------NNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 101 ~~~~~~~g~~~~~~~~~~~~-~~~------------~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~a 163 (360)
...++..|++++.++...++ +.. ..+++++++++||||||.++++ .+.++|+++++++|+||+
T Consensus 138 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~ 217 (412)
T d1yaaa_ 138 MAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTA 217 (412)
T ss_dssp HHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecce
Confidence 99999999999988864321 111 2467789999999999999993 456788889999999999
Q ss_pred ccCCCCCc-------------CCCCCCccEEEeccccccCCCCceEEEEeecCH----------HHHHHHHHHHhhcccc
Q 018172 164 YYWPQYTP-------------ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDT----------EVARKMTRFIELGSIG 220 (360)
Q Consensus 164 y~~~~~~~-------------~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~----------~~~~~l~~~~~~~~~~ 220 (360)
|.+..+.. .....++++++.|+||.++++|+|+||++++++ .+...+.........+
T Consensus 218 Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (412)
T d1yaaa_ 218 YQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSN 297 (412)
T ss_dssp CTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSS
T ss_pred eeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 98643321 125678899999999999999999999998431 1112223333456678
Q ss_pred CChHHHHHHHHHhcccC--CCchhHHHHHHHHHHHHHHHHHHHHHhcCC---cccCCCCCcccccccccCCCCCCccccc
Q 018172 221 VSKESQLRAAKILGIVS--DDYPNFFEYGRRLMSERWNMLRQVIRQSGV---FGLPEYPLEYCNFTGKFTNSHPGFAWLE 295 (360)
Q Consensus 221 ~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (360)
.+.+.|.++..++.... ..+..+++.+++.++++|+.+.+.|++++. +....|.+++ |+|+.
T Consensus 298 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~-------------F~~~~ 364 (412)
T d1yaaa_ 298 PPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGM-------------FSFTG 364 (412)
T ss_dssp CCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSS-------------EEECC
T ss_pred CChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceE-------------EEecC
Confidence 89999999988877311 123477888999999999999999998853 2233444444 88887
Q ss_pred CCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHHhc
Q 018172 296 SKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 296 ~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~ 350 (360)
++. +++.+++.++||.+.||+ |||++. +++.++.+.++|+++++.
T Consensus 365 ls~-e~~~~L~~e~~V~~~~g~---------Ris~~g~~~~~i~~l~~ai~~v~k~ 410 (412)
T d1yaaa_ 365 LTP-QMVKRLEETHAVYLVASG---------RASIAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp CCH-HHHHHHHHHHCEECCTTS---------EEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred cCH-HHHHHHHHhCCEEECCCC---------EEEeccCCHHHHHHHHHHHHHHHHh
Confidence 754 778889999999998863 999975 889999999999998764
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-36 Score=284.09 Aligned_cols=295 Identities=13% Similarity=0.043 Sum_probs=218.4
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH----HHHHHHhhcCCCCCCCceEEEeCCCCCCc
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQL----YQAALYALSSPGGPEPISVVSAAPYYSQY 100 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~----l~~~~~~l~~~gd~~~~~vl~~~p~~~~~ 100 (360)
..|++..|+ ++||+++++++..+......+++|+++.|++++ +.+++..++++||+ |++++|+|+.|
T Consensus 64 ~~Y~p~~G~-----~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~----Vlv~~P~y~~y 134 (397)
T d3tata_ 64 SLYLPMEGL-----NCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESG----VWVSDPTWENH 134 (397)
T ss_dssp BCCCCTTCC-----HHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCC----CEECSSCCTTH
T ss_pred CCCCCcccC-----HHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCc----ceecccCcccc
Confidence 459999998 999999999876543333334578888776664 55566667899999 99999999999
Q ss_pred HHHHHHhCCeeeeecCCccccc-------------cCCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeec
Q 018172 101 PAETDYLRSGLYKWDGDANTFD-------------KNNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 101 ~~~~~~~g~~~~~~~~~~~~~~-------------~~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~a 163 (360)
..+++..|.+++.++.+.++.. ..++++++++++||||||.++++ .+.++|+++++++|+||+
T Consensus 135 ~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~ 214 (397)
T d3tata_ 135 VAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIA 214 (397)
T ss_dssp HHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBS
T ss_pred HHHHHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehh
Confidence 9999999999999997654321 13578899999999999999993 556788889999999999
Q ss_pred ccCCCCCc---------CCCCCCccEEEeccccccCCCCceEEEEeecCH------HHHHHHHHHHhhccccCChHHHHH
Q 018172 164 YYWPQYTP---------ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDT------EVARKMTRFIELGSIGVSKESQLR 228 (360)
Q Consensus 164 y~~~~~~~---------~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~ 228 (360)
|.+..+.. .....++++++.|+||.++++|+|+||+++++. .+...+.........+.+...|.+
T Consensus 215 Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 294 (397)
T d3tata_ 215 YQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQV 294 (397)
T ss_dssp CTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHH
T ss_pred hhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHH
Confidence 98643321 124667899999999999999999999998421 222222333344556778888888
Q ss_pred HHHHhcccC--CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHH
Q 018172 229 AAKILGIVS--DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLL 306 (360)
Q Consensus 229 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 306 (360)
+...+.... ..+.++++..+++++++++.+.+.|..+. +.+.++. ..+..|+|+|+.++. +.+.+++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~------~~~~~~~----~~~~~G~F~~~~ls~-e~~~~L~ 363 (397)
T d3tata_ 295 VAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEM------PERNFDY----LLNQRGMFSYTGLSA-AQVDRLR 363 (397)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC------TTSCTTH----HHHCCSSBCCCCCCH-HHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCceEE----EcCCCceEEecCcCH-HHHHHHH
Confidence 888776211 11235666677777778887777776652 2222211 112344588998864 7778888
Q ss_pred HhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHH
Q 018172 307 RAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQ 348 (360)
Q Consensus 307 ~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~ 348 (360)
+++||.+.||. |||++. ++++++++.++|.+++
T Consensus 364 ~e~~V~l~~g~---------Ri~~a~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 364 EEFGVYLIASG---------RMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp TTTCEECCSSS---------CCBTTSCCTTTHHHHHHHHHHHC
T ss_pred HhCCEEeCCCC---------EEEeccCCHHHHHHHHHHHHHhC
Confidence 88999999864 899876 8999999999998874
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=6.1e-35 Score=274.10 Aligned_cols=293 Identities=13% Similarity=0.040 Sum_probs=215.5
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhh-cCCCCCCCC-cEEEcCChHHHHHHHHHh-------hcCCCCCCCceEEEeCC
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHV-VDNAVSDGR-HIVIGTGSTQLYQAALYA-------LSSPGGPEPISVVSAAP 95 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~-~~~~~~~~~-~i~~t~G~t~~l~~~~~~-------l~~~gd~~~~~vl~~~p 95 (360)
+.|++..|. ++||+++++++.. .+..+.... .++.|.|.+.++...... ++++||+ |++++|
T Consensus 68 ~~Y~p~~G~-----p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~----Vlv~~P 138 (412)
T d1ajsa_ 68 HEYLPILGL-----AEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTP----VYVSSP 138 (412)
T ss_dssp CCCCCTTCC-----HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSC----EEEEES
T ss_pred CCCCCCCCC-----HHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCE----EEEeCC
Confidence 459999998 9999999998643 222222221 244556666555554443 4799999 999999
Q ss_pred CCCCcHHHHHHhCCeeeeecC--Cccccc------------cCCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcE
Q 018172 96 YYSQYPAETDYLRSGLYKWDG--DANTFD------------KNNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGK 157 (360)
Q Consensus 96 ~~~~~~~~~~~~g~~~~~~~~--~~~~~~------------~~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~ 157 (360)
+|+.|..+++..|++.+.++. +.+... ..++++++++++||||||.++++ .+.++|++|+++
T Consensus 139 ~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ 218 (412)
T d1ajsa_ 139 TWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLF 218 (412)
T ss_dssp CCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred cchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEE
Confidence 999999999999998765432 111111 14678999999999999999993 556788889999
Q ss_pred EEEeecccCCCCCc----------CCCCCCccEEEeccccccCCCCceEEEEeecCHHHH-------HHHHHHHhhcccc
Q 018172 158 LIHDLAYYWPQYTP----------ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVA-------RKMTRFIELGSIG 220 (360)
Q Consensus 158 li~D~ay~~~~~~~----------~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~-------~~l~~~~~~~~~~ 220 (360)
+|+||+|.+..+.. .....++++++.|+||.++++|+|+||+++ +.... ..+.........+
T Consensus 219 ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (412)
T d1ajsa_ 219 PFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTV-VAKEPDSILRVLSQMQKIVRVTWSN 297 (412)
T ss_dssp EEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEE-ECSSHHHHHHHHHHHHHHHHTTTSS
T ss_pred EEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCcccccc-chhHHHHHHHHHHHHHHHhhccccc
Confidence 99999998643322 124567788999999999999999999998 43322 2233333445567
Q ss_pred CChHHHHHHHHHhcccC--CCchhHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCCCCcccccccccCCCCCCccccc
Q 018172 221 VSKESQLRAAKILGIVS--DDYPNFFEYGRRLMSERWNMLRQVIRQSGVF---GLPEYPLEYCNFTGKFTNSHPGFAWLE 295 (360)
Q Consensus 221 ~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (360)
.+...|.++..++.... +.++.+++.++++++++|+.+.+.|+.++.. ....+ ..|+|.|+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~-------------~~G~F~~~~ 364 (412)
T d1ajsa_ 298 PPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITD-------------QIGMFSFTG 364 (412)
T ss_dssp CCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHH-------------CCSSEEECC
T ss_pred cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecC-------------CCeEEEecC
Confidence 88888888888765211 1234678889999999999999999988421 11122 334488887
Q ss_pred CCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHHhc
Q 018172 296 SKEDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 296 ~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~~~ 350 (360)
+.+ +++.++++++||++.||. ||+++. ++++++++.++|.+++++
T Consensus 365 ls~-~~v~~L~~e~gV~~vpg~---------Ri~~ag~~~~~i~~~a~aI~~av~~ 410 (412)
T d1ajsa_ 365 LNP-KQVEYLINQKHIYLLPSG---------RINMCGLTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp CCH-HHHHHHHHTTCEECCTTS---------EEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHhCCEEEeCCC---------eEEeccCCHHHHHHHHHHHHHHHHh
Confidence 754 778888999999999874 999976 899999999999999876
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-35 Score=273.92 Aligned_cols=291 Identities=15% Similarity=0.121 Sum_probs=217.8
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCC-CCCCC-cEEEcCChHHHHHHHHH--hhcCCCCCCCceEEEeCCCCCCc
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNA-VSDGR-HIVIGTGSTQLYQAALY--ALSSPGGPEPISVVSAAPYYSQY 100 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~-~~~~~-~i~~t~G~t~~l~~~~~--~l~~~gd~~~~~vl~~~p~~~~~ 100 (360)
+.|++..|+ ++||+++++++..++.. ..+.. .+++|.|++.++.+.+. .++++||. |++|+|+|+.|
T Consensus 63 ~~Y~p~~G~-----~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~----Vlvp~P~y~~y 133 (396)
T d2q7wa1 63 KNYLGIDGI-----PEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKR----VWVSNPSWPNH 133 (396)
T ss_dssp CCCCCTTCC-----HHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCE----EEEEESCCTHH
T ss_pred CCCCCCcCC-----HHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceE----EEEecCCCccc
Confidence 359999998 99999999987544333 32322 23456777666665544 44789998 99999999999
Q ss_pred HHHHHHhCCeeeeecCCcccc-------------ccCCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeec
Q 018172 101 PAETDYLRSGLYKWDGDANTF-------------DKNNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLA 163 (360)
Q Consensus 101 ~~~~~~~g~~~~~~~~~~~~~-------------~~~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~a 163 (360)
..++...|++++.++...+.- ...++++++++++||||||.++++ .+.++|+++++++|+||+
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~ 213 (396)
T d2q7wa1 134 KSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFA 213 (396)
T ss_dssp HHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEES
T ss_pred hHHHHHcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEecc
Confidence 999999999999888654321 113578899999999999999993 566788899999999999
Q ss_pred ccCCCCCc---------CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHH-------HhhccccCChHHHH
Q 018172 164 YYWPQYTP---------ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRF-------IELGSIGVSKESQL 227 (360)
Q Consensus 164 y~~~~~~~---------~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~ 227 (360)
|.+..+.. ..+..++.+++.|+||.++++|+|+||+++ +...++.+... ......+.+...|.
T Consensus 214 Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 292 (396)
T d2q7wa1 214 YQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTL-VAADSETVDRAFSQMKAAIRANYSNPPAHGAS 292 (396)
T ss_dssp CTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEE-ECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred ccccccCCccCchHhhhhhhhcccccccccccccccccCCCcccccc-chhHHHHHHHhhhhhhhhhhccccCCCHHHHH
Confidence 98543321 123567788999999999999999999999 44444443322 22344677788888
Q ss_pred HHHHHhcccC--CCchhHHHHHHHHHHHHHHHHHHHHHhcCC---cccCCCCCcccccccccCCCCCCcccccCCchHHH
Q 018172 228 RAAKILGIVS--DDYPNFFEYGRRLMSERWNMLRQVIRQSGV---FGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDC 302 (360)
Q Consensus 228 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (360)
++..++.... ..+++++++++++++++|+.+.+.|++++. +....+++ |+|.|+.++. +++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~-------------G~F~~~~l~~-e~~ 358 (396)
T d2q7wa1 293 VVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQN-------------GMFSFSGLTK-EQV 358 (396)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCC-------------SSEEECCCCH-HHH
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecCCC-------------eEEEeeCCCH-HHH
Confidence 8877766211 123478889999999999999999999842 11223333 4488888864 778
Q ss_pred HHHHHhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHHH
Q 018172 303 EKLLRAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAIQ 348 (360)
Q Consensus 303 ~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~~ 348 (360)
.+++.++||++.||+ |||++. ++++++.+.++|.+++
T Consensus 359 ~~L~~e~gV~~~~g~---------Ri~~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 359 LRLREEFGVYAVASG---------RVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHCEECCTTC---------EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred HHHHHhCCEEECCCC---------EEEecCCCHHHHHHHHHHHHHhC
Confidence 888899999999864 999977 8999999999999874
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=5.6e-34 Score=265.97 Aligned_cols=289 Identities=14% Similarity=0.102 Sum_probs=216.0
Q ss_pred cccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCC-hHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTG-STQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G-~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
.|++..|. ++||+++++++...+....+.+.+++++| +..++.+.+..+.++||. |++|+|+|+.|..++
T Consensus 64 ~Y~p~~G~-----~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~----V~~p~p~~~~y~~~~ 134 (394)
T d2ay1a_ 64 TYAGLSGE-----PEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLR----VFVSDPTWPNHVSIM 134 (394)
T ss_dssp CCCCSSCC-----HHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCC----EEEEESCCHHHHHHH
T ss_pred CCCCCCCC-----HHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceE----EEEecccccchHHHH
Confidence 59999998 99999999987655555444434444433 344456666777899999 999999999999999
Q ss_pred HHhCCeeeeecCCccccc-------------cCCCeeEEEEcCCCCCCcccchH----HHHHHhhhcCcEEEEeecccCC
Q 018172 105 DYLRSGLYKWDGDANTFD-------------KNNGAYIEVVNSPNNPDGTIREA----VLAKVNRSAEGKLIHDLAYYWP 167 (360)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~-------------~~~~~~~i~~~~p~NPtG~~~~~----~~~~~~~~~~~~li~D~ay~~~ 167 (360)
+..|.+++.++...+... ..++++++++++||||||.++++ .+..+|+++++++|+||+|.+.
T Consensus 135 ~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l 214 (394)
T d2ay1a_ 135 NFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGF 214 (394)
T ss_dssp HHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTS
T ss_pred HHcCCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhh
Confidence 999999999886432111 13567888999999999999993 5567888899999999999864
Q ss_pred CCCcC---------CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHH-------HHHHhhccccCChHHHHHHHH
Q 018172 168 QYTPI---------TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKM-------TRFIELGSIGVSKESQLRAAK 231 (360)
Q Consensus 168 ~~~~~---------~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~ 231 (360)
.+... .....+.+++.|+||.++++|+|+||+++. ....+.. .........+.+...|..+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (394)
T d2ay1a_ 215 GDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLAL-CADAATRELAQGAMAFLNRQTYSFPPFHGAKIVST 293 (394)
T ss_dssp SSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEE-CSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHH
T ss_pred cccccccchhhhhhhhhcccccccccccccccCCcccccchhhc-hhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHH
Confidence 33221 124456888999999999999999999984 3333322 222333455677778877777
Q ss_pred Hhccc--CCCchhHHHHHHHHHHHHHHHHHHHHHhcCC---cccCCCCCcccccccccCCCCCCcccccCCchHHHHHHH
Q 018172 232 ILGIV--SDDYPNFFEYGRRLMSERWNMLRQVIRQSGV---FGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLL 306 (360)
Q Consensus 232 ~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 306 (360)
.+... ...++.+++.++++++++|+.+.+.|++++. +....|++++ |+|+.++. +++.+++
T Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~-------------F~~~~ls~-~~~~~L~ 359 (394)
T d2ay1a_ 294 VLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGM-------------FSRLGATP-EQVKRIK 359 (394)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSS-------------EEECCCCH-HHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECCCcee-------------EEecCcCH-HHHHHHH
Confidence 66521 1224578888999999999999999988742 2223344444 88888754 7788888
Q ss_pred HhhCeeeeCCCCCCCCCCeEEEEecC-ChHHHHHHHHHHHHH
Q 018172 307 RAERIMARGGRRFGADAKYARVSMLS-REEIFNIFLERLSAI 347 (360)
Q Consensus 307 ~~~gI~~~pg~~f~~~~~~~R~s~~~-~~e~~~~~~~~l~~~ 347 (360)
.++||++.||. |||++. ++++++++.++|.++
T Consensus 360 ~~~~V~~~~g~---------Ri~~a~l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 360 EEFGIYMVGDS---------RINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHHCEECCTTC---------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred HhCCEEecCCC---------EEEecCCCHHHHHHHHHHHHHh
Confidence 99999999863 999987 999999999999875
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.95 E-value=1.5e-27 Score=219.70 Aligned_cols=283 Identities=12% Similarity=-0.034 Sum_probs=193.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEE-eCCCCCCcHHHHHHhCCeeeeecC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVS-AAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~-~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
.+++++..++.++. .+.+++++|+|+++++..++.+|.++++. +++ +.|+|..+...++..|++++...
T Consensus 52 ~~~l~~~~~~~~~~-----~~~e~~~~~~~~~~a~~~~l~al~~~~~v----i~~~~~~~~~~~~~~~~l~g~~~v~~~- 121 (366)
T d2aeua1 52 AEKVNEYGLKHLGG-----DENDKCVGFNRTSSAILATILALKPKKVI----HYLPELPGHPSIERSCKIVNAKYFESD- 121 (366)
T ss_dssp HHHHHHHHHHHHTC-----CTTEEEEEESSHHHHHHHHHHHHCCSEEE----EECSSSSCCTHHHHHHHHTTCEEEEES-
T ss_pred HHHHHHHHHHHccC-----CCccEEEEeCCHHHHHHHHHHHhCCCCEE----EEecCCCcchhHHHHHHhcCCeEECCC-
Confidence 37888887777663 24568999999999999999998754442 344 46999999999999999876553
Q ss_pred Ccccccc--CCCeeEEEEcCCCCCCcccch--HHHHHHhhhcCcEEEEeecccCC----CCCcCCCCCCccEEEeccccc
Q 018172 117 DANTFDK--NNGAYIEVVNSPNNPDGTIRE--AVLAKVNRSAEGKLIHDLAYYWP----QYTPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 117 ~~~~~~~--~~~~~~i~~~~p~NPtG~~~~--~~~~~~~~~~~~~li~D~ay~~~----~~~~~~~~~~~~i~~~S~sK~ 188 (360)
|.+.+.. +++||+|++++|+||++.... +.+.++|+++|+++++|++|..+ ...+.....+.+++++|+||.
T Consensus 122 d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~ 201 (366)
T d2aeua1 122 KVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKL 201 (366)
T ss_dssp CHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSS
T ss_pred CHHHHHHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEeccccc
Confidence 4455544 688999999999998765444 56778899999999999999732 111112234567999999997
Q ss_pred cCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHH----Hh
Q 018172 189 TGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVI----RQ 264 (360)
Q Consensus 189 ~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~ 264 (360)
+ +|+|+||+++ +.++++.+.......+.+.+++.|.++.++++.+.. ..+++..+..+...+.+.+.+ ..
T Consensus 202 ~--~g~~~G~i~~-~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~---~r~~~~~~~~~~i~~~~~~~~~~~~~~ 275 (366)
T d2aeua1 202 M--EGPRGGLLAG-KKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNL---ERIRKAFERAKNFDLSKIEKLNKELKA 275 (366)
T ss_dssp S--SSCSCEEEEE-EHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCH---HHHHHHHHHHHHCCCHHHHHHHHHHTT
T ss_pred c--cccceeEEEe-cHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 5 5899999999 899999999888877888999999998888864321 222222222222111222222 22
Q ss_pred cCCccc--CCCCCcccccccccCCCCCCcccccCC--------ch-HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC-
Q 018172 265 SGVFGL--PEYPLEYCNFTGKFTNSHPGFAWLESK--------ED-EDCEKLLRAERIMARGGRRFGADAKYARVSMLS- 332 (360)
Q Consensus 265 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~- 332 (360)
.+.... ..+.+. .|++.... +. +++..+|+++||.+.||..|....+++|||++.
T Consensus 276 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~~ 342 (366)
T d2aeua1 276 IDDNINIVYERTPT-------------GFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSR 342 (366)
T ss_dssp TCTTEEEEEEECSS-------------EEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSG
T ss_pred cccccCcccccCcc-------------chhccCCCcceeecccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEEEecccc
Confidence 221111 111111 23333322 12 677888999999999999886567899999976
Q ss_pred ChHH--HHHHHHHHHHHHh
Q 018172 333 REEI--FNIFLERLSAIQG 349 (360)
Q Consensus 333 ~~e~--~~~~~~~l~~~~~ 349 (360)
+.++ .+.+++++.+.++
T Consensus 343 ~~~~i~~d~l~~ai~~~lK 361 (366)
T d2aeua1 343 DAERIDDNYIIKAIVESIK 361 (366)
T ss_dssp GGGGSCHHHHHHHHHHHHH
T ss_pred chhhCCHHHHHHHHHHHHH
Confidence 3322 4666666655554
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.95 E-value=1.2e-26 Score=214.85 Aligned_cols=280 Identities=15% Similarity=0.089 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYK 113 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~ 113 (360)
.++|+.++++++. ++++|++|+|+|+++++++.++ .++|++ |+++.+.|++.... .+..|++++.
T Consensus 53 ~~~r~~la~~~~~------~~~~i~~~~g~t~a~~~~~~~l~~~~g~~----i~~~~~~~~s~~~~~~~~~~~~g~~~~~ 122 (381)
T d1elua_ 53 AQLRQALAETFNV------DPNTITITDNVTTGCDIVLWGLDWHQGDE----ILLTDCEHPGIIAIVQAIAARFGITYRF 122 (381)
T ss_dssp HHHHHHHHHHTTS------CGGGEEEESSHHHHHHHHHHHSCCCTTCE----EEEETTCCHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHhCC------CcccEEEECChHHHhhhcchhhhhcCCce----EEEeccccceeeeccccccccccccccc
Confidence 6789999999996 5679999999999999999998 678888 99999999866544 4446999998
Q ss_pred ecCCccc--------ccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhh----cCcEEEEeecccCCCCCcCCCCCCc
Q 018172 114 WDGDANT--------FDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRS----AEGKLIHDLAYYWPQYTPITGAADH 178 (360)
Q Consensus 114 ~~~~~~~--------~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~----~~~~li~D~ay~~~~~~~~~~~~~~ 178 (360)
++.+... +.. ++++++++++++|||||..++ +++.++|++ +++++++|.+++.+..+......+.
T Consensus 123 v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~ 202 (381)
T d1elua_ 123 FPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEV 202 (381)
T ss_dssp ECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCC
T ss_pred cccccccccchHHHHHHhhhcccccccccccccccccccchhhHHHHHHhhccccccccccccccccccccccccccccc
Confidence 8765321 111 578999999999999999999 677777775 4689999999987766666677789
Q ss_pred cEEEeccccccCCCCceEEEEeecCHHHHHHHHHHH----------------------hhccccCChHHHHHHHHHhccc
Q 018172 179 DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI----------------------ELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 179 ~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
++++.|++|.++ .+.++|++.. .++..+.+.... .....+.+.....++.++++.+
T Consensus 203 D~~~~s~~K~~~-~p~G~g~l~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~ 280 (381)
T d1elua_ 203 DYYAFTGHKWFA-GPAGVGGLYI-HGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLH 280 (381)
T ss_dssp SEEEEESSSTTC-CCTTCEEEEE-CTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred cccccccccccc-ccchhhHHHh-hHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhH
Confidence 999999999887 3345787777 555554442111 1122245555555555566533
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeee
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMA 313 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~ 313 (360)
... ...+...++.+++++++.+.|++++++.+..+.. ..+.++++.+++. +.+.+.|+++||.+
T Consensus 281 ~~~--g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-----------~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v 347 (381)
T d1elua_ 281 QRQ--GTAEERYQAICQRSEFLWRGLNQLPHVHCLATSA-----------PQAGLVSFTVDSPLGHRAIVQKLEEQRIYL 347 (381)
T ss_dssp HHH--CCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSC-----------CSSSEEEEEECSSSCHHHHHHHHHHTTEEC
T ss_pred HHh--cccccchhhhhhHHHHHHHHHhcCCCeEecCCCC-----------ccccEEEEEcCCCCCHHHHHHHHHhCCcEE
Confidence 221 2345556788889999999999998776654321 1223455554432 77889999999998
Q ss_pred eCCCCCCCCCCeEEEEecC--ChHHHHHHHHHHHHH
Q 018172 314 RGGRRFGADAKYARVSMLS--REEIFNIFLERLSAI 347 (360)
Q Consensus 314 ~pg~~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~ 347 (360)
+. ++ .++++|+|+.. ++||+++++++|+++
T Consensus 348 ~~---~~-~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 348 RT---IA-DPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp EE---ET-TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred Ee---cC-CCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 64 33 36799999865 899999999999875
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.8e-25 Score=206.31 Aligned_cols=286 Identities=15% Similarity=0.089 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh----cCCCCCCCceEEEeCCCCCCcHHHHH---HhCCee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL----SSPGGPEPISVVSAAPYYSQYPAETD---YLRSGL 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l----~~~gd~~~~~vl~~~p~~~~~~~~~~---~~g~~~ 111 (360)
+++|+.+++++|. ++++|++|+|+|++++.++.++ .++||+ |+++++.|+++...++ ..|+++
T Consensus 51 ~~~R~~iA~~lg~------~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~----Vv~~~~~~~s~~~~~~~~~~~G~~v 120 (391)
T d1p3wa_ 51 DIARNQIADLVGA------DPREIVFTSGATESDNLAIKGAANFYQKKGKH----IITSKTEHKAVLDTCRQLEREGFEV 120 (391)
T ss_dssp HHHHHHHHHHHTC------CGGGEEEESSHHHHHHHHHHHHHHHHGGGCCE----EEEETTSCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCC------CCCcEEEECCHHHHHHHHHhhhhhhhcCCCCE----EEEeccccchHHHHHHHHHHcCCEE
Confidence 5789999999997 6679999999999999988765 478998 9999999999876654 459999
Q ss_pred eeecCCcccc-cc-------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEE
Q 018172 112 YKWDGDANTF-DK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182 (360)
Q Consensus 112 ~~~~~~~~~~-~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~ 182 (360)
+.++.+.++. +. +++|++|++++++||||.+++ +++.++|+++|+++++|.+|..+..+......+.++++
T Consensus 121 ~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~ 200 (391)
T d1p3wa_ 121 TYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 200 (391)
T ss_dssp EEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEE
T ss_pred EEeCCCCCCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhccccccc
Confidence 9998775432 21 689999999999999999999 77888899999999999999877666666777889999
Q ss_pred eccccccCCCCceEEEEeecCHHHHHHHHHHH-------hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 018172 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRFI-------ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERW 255 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (360)
.|++|.+|.+| +|++.. .++....+.... .....+.+.....++...+.... .......+++++.+
T Consensus 201 ~s~~k~~g~~g--~g~~~~-~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~ 273 (391)
T d1p3wa_ 201 FSGHKIYGPKG--IGALYV-RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAK----EEMATEMERLRGLR 273 (391)
T ss_dssp EESTTTTSCSS--CEEEEE-CBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred cccccccCCCc--eEEEEE-ecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHH----HHhhHHHHHHHHHH
Confidence 99999998777 566666 333332222111 11122333334444333343221 44455566777778
Q ss_pred HHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC--CchHHHHHHHHhhCeeeeCCCCCC-------------
Q 018172 256 NMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES--KEDEDCEKLLRAERIMARGGRRFG------------- 320 (360)
Q Consensus 256 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gI~~~pg~~f~------------- 320 (360)
+.+.+.|..++...+...... .....+.+.. ...+.+...| +++.++.|..+.
T Consensus 274 ~~l~~~L~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~~ 341 (391)
T d1p3wa_ 274 NRLWNGIKDIEEVYLNGDLEH----------GAPNILNVSFNYVEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRAL 341 (391)
T ss_dssp HHHHHTTTTSTTEEECSCTTT----------SCTTEEEEEETTSCHHHHHHHT--TTEECBCCCC------CCCHHHHHH
T ss_pred HHHHHHHHhhcCeeecccccc----------cCceEEEEEeCCCChHHHHHHh--CCCEEEccccccCCccchhHHHHHc
Confidence 888888887765444322111 1111112222 2234454444 467777665331
Q ss_pred -C----CCCeEEEEecC--ChHHHHHHHHHHHHHHhchhc
Q 018172 321 -A----DAKYARVSMLS--REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 321 -~----~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~~ 353 (360)
. ..+++|+|+.. ++||+++++++|++++++.|.
T Consensus 342 g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~ 381 (391)
T d1p3wa_ 342 GLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 381 (391)
T ss_dssp TCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 12579999976 899999999999999987654
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=4e-25 Score=202.98 Aligned_cols=280 Identities=13% Similarity=0.072 Sum_probs=191.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
...+++.+|+|+|. +++++|+|+|+++..++.+++++||. |++++++|.+....++..|++++.++.+
T Consensus 49 ~~~~~~~~A~~~g~--------e~~~~t~g~t~a~~~~~~al~~~gd~----Vi~~~~~h~s~~~~~~~~g~~v~~v~~~ 116 (364)
T d2e7ja1 49 HDFIHNQLPKFLGC--------DVARVTNGAREAKFAVMHSLAKKDAW----VVMDENCHYSSYVAAERAGLNIALVPKT 116 (364)
T ss_dssp HHHHHTHHHHHTTS--------SEEEEESSHHHHHHHHHHHHCCTTCE----EEEETTCCHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHhCc--------CEEEEECcHHHHHHHHHHHHhCCCcE----EEeecccccccchHHHhccceEEEeeec
Confidence 37789999999994 47999999999999999999999998 9999999999999999999999999865
Q ss_pred cc-cccc--------------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEE
Q 018172 118 AN-TFDK--------------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181 (360)
Q Consensus 118 ~~-~~~~--------------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~ 181 (360)
.. .+.. ..++++|++++|+||||.+.+ +++.++|+++|+++++|++|+.+..+......+.+++
T Consensus 117 ~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~ 196 (364)
T d2e7ja1 117 DYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFI 196 (364)
T ss_dssp CTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEE
T ss_pred cccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhccccccccee
Confidence 32 1111 235678999999999999988 7888899999999999999987655544445567899
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHHh--------hccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHH
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIE--------LGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
++|+||.++.+| ++||+++ ++++++.+..... ......+.....++.+.++... ++++...+.+ +
T Consensus 197 ~~S~~K~~~~~g-~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~-~ 269 (364)
T d2e7ja1 197 VGSGHKSMAASG-PIGVMGM-KEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVR----ERIKRWDEEV-E 269 (364)
T ss_dssp EEEHHHHSSCCS-SCEEEEE-CTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHH----HHGGGHHHHH-H
T ss_pred eeccccccCCCC-CEEEEEE-CHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHHHH----HHHHHHHHHH-H
Confidence 999999999666 7999998 6666655432211 0111222333334444443221 3333333333 4
Q ss_pred HHHHHHHHHHhcCCcccCC-CCCcccccccccCCCCCCcccc--------cCCch-HHHHHHHHhhCeeeeCCCCCCCCC
Q 018172 254 RWNMLRQVIRQSGVFGLPE-YPLEYCNFTGKFTNSHPGFAWL--------ESKED-EDCEKLLRAERIMARGGRRFGADA 323 (360)
Q Consensus 254 ~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~l~~~gI~~~pg~~f~~~~ 323 (360)
+..++.+.|.+++...+.. +...... +... ..... ......|...++... ..+. .
T Consensus 270 ~~~~~~~~l~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~g~-~ 334 (364)
T d2e7ja1 270 KARRFAAEMEKLGIKQLGDNPHNHDLM-----------FFHAEVLYEISKKAKGGRFFLYRELKSRKIHGI---KPGL-T 334 (364)
T ss_dssp HHHHHHHHHHHTTCEEESSSSCCSSEE-----------EEECHHHHHHHHHSSSGGGHHHHHHHHTTEECS---CTTC-C
T ss_pred HHHHHHHHHHHcCCeecCCCCCCcceE-----------EEeccchHHHHHHhhccchHHHHHHHhcCCcee---cCCC-c
Confidence 5567778888875433221 1111100 1111 11111 445666777777532 1222 4
Q ss_pred CeEEEEe-cCChHHHHHHHHHHHHHHhch
Q 018172 324 KYARVSM-LSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 324 ~~~R~s~-~~~~e~~~~~~~~l~~~~~~~ 351 (360)
..+|++. ..++|++++++++|++++++.
T Consensus 335 ~~~~~~~~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 335 RYFKLSTYGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp SEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 4677764 348999999999999999864
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.8e-24 Score=200.34 Aligned_cols=286 Identities=13% Similarity=0.066 Sum_probs=217.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh----cCCCCCCCceEEEeCCCCCCcHHHH----HHhCC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL----SSPGGPEPISVVSAAPYYSQYPAET----DYLRS 109 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l----~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~ 109 (360)
+++.|+.++++++. .++++|++|+|+|++++.++.++ ..+|++ |++..-.|++....+ +..|+
T Consensus 68 ~e~~R~~ia~~l~~-----~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~----il~~~~e~~s~~~~~~~~a~~~g~ 138 (405)
T d1jf9a_ 68 MENVRKRASLFINA-----RSAEELVFVRGTTEGINLVANSWGNSNVRAGDN----IIISQMEHHANIVPWQMLCARVGA 138 (405)
T ss_dssp HHHHHHHHHHHTTC-----SCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCE----EEEETTCCGGGTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC-----CCcccccccCcHHHHHHHHHhcccccccCCCCE----EEEEeCcccchHHHHHHHHHHcCc
Confidence 36788899999984 14469999999999999888763 577888 999999999876554 45699
Q ss_pred eeeeecCCcccccc--------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccE
Q 018172 110 GLYKWDGDANTFDK--------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDI 180 (360)
Q Consensus 110 ~~~~~~~~~~~~~~--------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i 180 (360)
+++.++.+.++... +++|++++++..+|.||.++| +++.++|+++|+++++|.+++.+..+......+.++
T Consensus 139 ~v~~~~~~~~g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~ 218 (405)
T d1jf9a_ 139 ELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDF 218 (405)
T ss_dssp EEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSE
T ss_pred EEEEECCCCCCcCCHHHHHHhccCCcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhcCCce
Confidence 99999987654332 579999999999999999999 788888889999999999999877666666788899
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHH----------------------HhhccccCChHHHHHHHHHhcccCC
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRF----------------------IELGSIGVSKESQLRAAKILGIVSD 238 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~----------------------~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (360)
++.|++|.+|++| +|++.. +++..+.+... ..+...+.+.....++.++++.+..
T Consensus 219 ~~~s~hK~~Gp~G--~g~l~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~ 295 (405)
T d1jf9a_ 219 YVFSGHKLYGPTG--IGILYV-KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSA 295 (405)
T ss_dssp EEEEGGGTTSCSS--CEEEEE-CHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHH
T ss_pred eeccccccccCCC--ceeeee-chhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHH
Confidence 9999999998777 788887 67766543221 1122345667777777777775432
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCC
Q 018172 239 DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGG 316 (360)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg 316 (360)
..++++.++.....+++.+.+...+......|.. ....+.+.++. .+.+...|.++||.++.|
T Consensus 296 ---~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~------------r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G 360 (405)
T d1jf9a_ 296 ---LGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQN------------RLGVIAFNLGKHHAYDVGSFLDNYGIAVRTG 360 (405)
T ss_dssp ---HCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTT------------CCSEEEEEETTCCHHHHHHHHHHTTEECEEE
T ss_pred ---hChHHHHHHHHHHHHHHHhhhhcCCcccccCCcC------------cCcEEEEEcCCCCHHHHHHHHHHCCcEEEcc
Confidence 4567777777888888888888886655544431 12234455543 377888899999999988
Q ss_pred CCCC-------CCCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 317 RRFG-------ADAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 317 ~~f~-------~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
+.+. ..++++|+|+.. ++||+++++++|+++.+-
T Consensus 361 ~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~ 403 (405)
T d1jf9a_ 361 HHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 403 (405)
T ss_dssp CTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 7542 136789999976 899999999999998763
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.90 E-value=2e-22 Score=187.90 Aligned_cols=289 Identities=16% Similarity=0.137 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh----cCCCCCCCceEEEeCCCCCCcHHHH----HHhCCe
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL----SSPGGPEPISVVSAAPYYSQYPAET----DYLRSG 110 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l----~~~gd~~~~~vl~~~p~~~~~~~~~----~~~g~~ 110 (360)
++.|+.+++++|. .+++.+++++++++++++++..+ .++|++ |++.+-.|++....+ +..|.+
T Consensus 69 e~aR~~ia~llga-----~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~----il~s~~e~~s~~~~~~~~~~~~g~~ 139 (408)
T d1t3ia_ 69 EAVRNKVAKFINA-----RSPREIVYTRNATEAINLVAYSWGMNNLKAGDE----IITTVMEHHSNLVPWQMVAAKTGAV 139 (408)
T ss_dssp HHHHHHHHHHTTC-----SCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCE----EEEETTCCGGGTHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHhCC-----CCcccEEeecchHHHHHHHHhhccccccCCCCE----EEeecccchhhhhhhhhhhhccCce
Confidence 5789999999986 13467999999999999987763 567888 999999999776554 446999
Q ss_pred eeeecCCcccccc--------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEE
Q 018172 111 LYKWDGDANTFDK--------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIM 181 (360)
Q Consensus 111 ~~~~~~~~~~~~~--------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~ 181 (360)
++.++.+.++... +++|++|+++..+|-||..++ +++.++|+++|+++++|.+++.+..+......+.+++
T Consensus 140 v~~~~~~~~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~ 219 (408)
T d1t3ia_ 140 LKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWL 219 (408)
T ss_dssp EEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEE
T ss_pred EeeeeccccccccHHHhhhccCCCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecccccccccccCCceE
Confidence 9988866443221 589999999999999999999 7778888899999999999988777666667788999
Q ss_pred EeccccccCCCCceEEEEeecCHHHHHHHHHHH---------------------hhccccCChHHHHHHHHHhcccCCCc
Q 018172 182 LFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI---------------------ELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 182 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
+.|.+|.+|++| +|++.. .++....+.... .+...+.+.....++.++++.+.+
T Consensus 220 ~~s~hK~~gp~G--~g~l~v-~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~-- 294 (408)
T d1t3ia_ 220 VASGHKMCAPTG--IGFLYG-KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTD-- 294 (408)
T ss_dssp EEEGGGTTSCTT--CEEEEE-CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHH--
T ss_pred EeccccccCCCC--cccccc-chhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHH--
Confidence 999999888666 788877 677665542111 122445677777777777775542
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~ 318 (360)
..+++++++..+..+++.+.+...+...+..+.... ...+..+.+.+++ .+.+...|.++||.++.|..
T Consensus 295 -~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~ 365 (408)
T d1t3ia_ 295 -LGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKH--------GDRAALASFNVAGLHASDVATMVDQDGIAIRSGHH 365 (408)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGG--------SCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCT
T ss_pred -cCHHHHHHHHHHHHhHHhhhhccCccccccCCCccc--------cCcceEEEEEeCCCCHHHHHHHHhhCCcEEecCcc
Confidence 567788888888999999999988776665433211 0122234444443 47788889999999998875
Q ss_pred CC-------CCCCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 319 FG-------ADAKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 319 f~-------~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
+. ..++.+|||+.. ++||+++++++|+++++-
T Consensus 366 c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 366 CTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp TCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 42 136789999977 899999999999999864
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.9e-21 Score=179.20 Aligned_cols=276 Identities=13% Similarity=0.085 Sum_probs=204.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGD 117 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 117 (360)
+.+|++.+++|+|. + ..++.++++.+...++..+.+++|. |++..-.|.++...++..+.+++.++..
T Consensus 85 ~~~lE~~LA~~~g~-------e-~al~~~SG~~an~~~i~al~~~~d~----v~~d~~~h~si~~g~~~~~~~~~~~~hn 152 (383)
T d1bs0a_ 85 HQALEEELAEWLGY-------S-RALLFISGFAANQAVIAAMMAKEDR----IAADRLSHASLLEAASLSPSQLRRFAHN 152 (383)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHHCCTTCE----EEEETTCCHHHHHHHHTSSSEEEEECTT
T ss_pred HHHHHHHHHHhcCC-------C-ceEEecccchhhHHHHHhhcCCCce----EEeeccccHHHhhccccCCCcceEecch
Confidence 38999999999994 4 6777788899999999999999998 9999999999999999999999888743
Q ss_pred -cccccc-----CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCC------CCCCccEEEec
Q 018172 118 -ANTFDK-----NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPIT------GAADHDIMLFT 184 (360)
Q Consensus 118 -~~~~~~-----~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~------~~~~~~i~~~S 184 (360)
.+.++. .++.++|++..+++++|.+.+ +++.++|+++++++++||+|+.+.+..-. .....++.+.|
T Consensus 153 d~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t 232 (383)
T d1bs0a_ 153 DVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVT 232 (383)
T ss_dssp CHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCcccccccc
Confidence 333322 356788899999999999988 78889999999999999999964332211 13355677889
Q ss_pred cccccCCCCceEEEEeecCHHHHHHHHHHHhhccc--cCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 018172 185 LSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI--GVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVI 262 (360)
Q Consensus 185 ~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (360)
++|.+|.+| |++.+ +.+.++.++.......+ ..++....++.++++.+.. ...+..+.++.++..++.+.|
T Consensus 233 ~~ka~g~~G---g~v~~-~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~---~~~~~~~~~l~~~~~~~~~~l 305 (383)
T d1bs0a_ 233 FGKGFGVSG---AAVLC-SSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRS---DEGDARREKLAALITRFRAGV 305 (383)
T ss_dssp SSSTTSSCC---EEEEE-CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccc---ccccc-chhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHH
Confidence 999999887 99888 88999999765432222 3334443444445543322 566778888899999999999
Q ss_pred HhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEecC--ChH
Q 018172 263 RQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGA--DAKYARVSMLS--REE 335 (360)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~~--~~e 335 (360)
++.+...... .+..+.+.+.+. ..+.+.|.++||.+.+..+... +...+|++++. ++|
T Consensus 306 ~~~g~~~~~~---------------~s~Ii~v~~g~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~e 370 (383)
T d1bs0a_ 306 QDLPFTLADS---------------CSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQ 370 (383)
T ss_dssp TTSSCEECSC---------------CSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHH
T ss_pred HhcCCccCCC---------------CCCEEEEEECCHHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHH
Confidence 9885322211 111233334343 4677888899999987543321 34569999966 999
Q ss_pred HHHHHHHHHHHH
Q 018172 336 IFNIFLERLSAI 347 (360)
Q Consensus 336 ~~~~~~~~l~~~ 347 (360)
++++++++|..+
T Consensus 371 did~l~~~L~~~ 382 (383)
T d1bs0a_ 371 DIDRLLEVLHGN 382 (383)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999764
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.88 E-value=7.4e-21 Score=174.73 Aligned_cols=276 Identities=11% Similarity=0.044 Sum_probs=199.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh--cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeec
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL--SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWD 115 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l--~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~ 115 (360)
+.+|++.+++|++. + ..++.+++..+...++..| .+++|. |+...-.|.++...+++.+++++.++
T Consensus 92 h~~LE~~lA~~~g~-------e-~all~~sG~~An~~~i~~l~~~~~~d~----i~~D~~~Hasi~~g~~ls~a~~~~f~ 159 (396)
T d2bwna1 92 HRRLEAEIAGLHQK-------E-AALVFSSAYNANDATLSTLRVLFPGLI----IYSDSLNHASMIEGIKRNAGPKRIFR 159 (396)
T ss_dssp HHHHHHHHHHHTTC-------S-EEEEESCHHHHHHHHHHHHHHHSTTCE----EEEETTCCHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHHHHhCC-------C-ceeeeecchHHHHHHHHHHhcccCCCc----eeehhhhhhccchhhhccccCceEee
Confidence 38999999999994 4 5666667788888888887 467786 88888899999999999999999887
Q ss_pred CC-cccccc------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcC----C----CCCCcc
Q 018172 116 GD-ANTFDK------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPI----T----GAADHD 179 (360)
Q Consensus 116 ~~-~~~~~~------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~----~----~~~~~~ 179 (360)
.. .+.++. ..+.++|++....+.+|.+.| +++.+++++|+.++++||+|+.+.+..- . .....+
T Consensus 160 Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~d 239 (396)
T d2bwna1 160 HNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRID 239 (396)
T ss_dssp TTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCS
T ss_pred cchHHHhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeee
Confidence 44 222221 345678888888899999988 8888999999999999999996433221 1 134468
Q ss_pred EEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhcccc--CChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH
Q 018172 180 IMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIG--VSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNM 257 (360)
Q Consensus 180 i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (360)
++++||+|+||..| |++.+ +.++++.+........++ .++....++.++++.+.. ...++.+..++.+.++
T Consensus 240 i~~gTlsKa~g~~G---g~v~~-~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~---~~~~~~r~~l~~~~~~ 312 (396)
T d2bwna1 240 IFNGTLAKAYGVFG---GYIAA-SARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKT---AEGQKLRDAQQMHAKV 312 (396)
T ss_dssp EEEEESSSTTCSCC---EEEEE-CHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHH
T ss_pred eeeecccccccccc---cccch-hHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHHH
Confidence 99999999999888 99887 899999998765433333 333333344445554432 5567778888899999
Q ss_pred HHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEec
Q 018172 258 LRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARGGRRFGA--DAKYARVSML 331 (360)
Q Consensus 258 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~ 331 (360)
+.+.+...+. .+.... +..+.+.+.+. ....++|+++||.+.+..+... +...+|++++
T Consensus 313 ~~~~l~~~g~-~~~~~~--------------spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~ls 377 (396)
T d2bwna1 313 LKMRLKALGM-PIIDHG--------------SHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPS 377 (396)
T ss_dssp HHHHHHHHTC-CBCCCS--------------SSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCC
T ss_pred HHHHHHhcCC-CcCCCC--------------CCEEEEEeCCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeC
Confidence 9999988843 222111 11233444443 3344567789999887544322 3457999997
Q ss_pred C--ChHHHHHHHHHHHHH
Q 018172 332 S--REEIFNIFLERLSAI 347 (360)
Q Consensus 332 ~--~~e~~~~~~~~l~~~ 347 (360)
. ++|++++++++|+++
T Consensus 378 a~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 378 PVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHh
Confidence 7 999999999999986
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=2.3e-21 Score=178.71 Aligned_cols=284 Identities=14% Similarity=0.108 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh----cCCCCCCCceEEEeCCCCCCcHHHHH---HhCCee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL----SSPGGPEPISVVSAAPYYSQYPAETD---YLRSGL 111 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l----~~~gd~~~~~vl~~~p~~~~~~~~~~---~~g~~~ 111 (360)
++.|+.+++++++ ++++|++++|+|++++.++..+ ..+|+. ++++...|+.+....+ ..|+++
T Consensus 47 ~~aR~~ia~l~~~------~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~----v~~~~~~~~~~~~~~~~~~~~g~~v 116 (376)
T d1eg5a_ 47 EKAREKVAKVLGV------SPSEIFFTSCATESINWILKTVAETFEKRKRT----IITTPIEHKAVLETMKYLSMKGFKV 116 (376)
T ss_dssp HHHHHHHHHHHTS------CGGGEEEESCHHHHHHHHHHHHHHHTTTTCCE----EEECTTSCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCC------CCCcEEEECCHHHHHHhhhhcccccccccCcc----cccccccchhhHHHHHHHHhcCCEE
Confidence 5678999999997 6679999999999999988643 455665 8888887777766554 459999
Q ss_pred eeecCCccc-ccc-------CCCeeEEEEcCCCCCCcccch-HHHHHHh--hhcCcEEEEeecccCCCCCcCCCCCCccE
Q 018172 112 YKWDGDANT-FDK-------NNGAYIEVVNSPNNPDGTIRE-AVLAKVN--RSAEGKLIHDLAYYWPQYTPITGAADHDI 180 (360)
Q Consensus 112 ~~~~~~~~~-~~~-------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~--~~~~~~li~D~ay~~~~~~~~~~~~~~~i 180 (360)
+.+|++.++ ++. +++|+++++++++|+||...+ +.+.+++ ...++++++|.++..+..+......+.++
T Consensus 117 ~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~ 196 (376)
T d1eg5a_ 117 KYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDY 196 (376)
T ss_dssp EECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSE
T ss_pred EEEcCCCCCeECHHHHHHhcCCCceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccccccccccCccc
Confidence 999877543 221 589999999999999999987 4555544 33699999999999877777677888999
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHH----HHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMT----RFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWN 256 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (360)
+++|++|.+|.+|.+++|+-- + ...+... ..........+......+.+...... ..............+
T Consensus 197 ~~~s~~K~~gp~G~~~l~~~~-~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 270 (376)
T d1eg5a_ 197 ASFSAHKFHGPKGVGITYIRK-G-VPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAV----EELSEAAKHMEKLRS 270 (376)
T ss_dssp EEEEGGGGTSCTTCEEEEECT-T-SCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHH----HTHHHHHHHHHHHHH
T ss_pred eecccceeecCCCceeEEecc-C-cccCCcccCCCCcccccCCcccchhhhhHHHHhhccc----cchhhhhhhhhhhhh
Confidence 999999999999977776532 2 1111000 00111122234455444444443221 334455555666677
Q ss_pred HHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc--hHHHHHHHHhhCeeeeCCCCCCC-------------
Q 018172 257 MLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--DEDCEKLLRAERIMARGGRRFGA------------- 321 (360)
Q Consensus 257 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~~~pg~~f~~------------- 321 (360)
++.+.|.......+..... .....+.+.+++ ...+...|.++||.+++|..+..
T Consensus 271 ~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~g 339 (376)
T d1eg5a_ 271 KLVSGLMNLGAHIITPLEI-----------SLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMG 339 (376)
T ss_dssp HHHHHHHTTTCEECSCTTS-----------BCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTT
T ss_pred hhccccccccccccccccc-----------cccceeeeccCCCCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcC
Confidence 7788887764333322111 011122233332 37788889999999998864321
Q ss_pred -----CCCeEEEEecC--ChHHHHHHHHHHHHHHh
Q 018172 322 -----DAKYARVSMLS--REEIFNIFLERLSAIQG 349 (360)
Q Consensus 322 -----~~~~~R~s~~~--~~e~~~~~~~~l~~~~~ 349 (360)
..+++|+|+.. ++||+++++++|++++.
T Consensus 340 i~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 340 VDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp CCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 02469999976 89999999999999875
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=3.7e-20 Score=171.48 Aligned_cols=278 Identities=14% Similarity=0.090 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC-C
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG-D 117 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~-~ 117 (360)
.+|++.+++|++. + .++++++++++...++..+.+++|. |+...-.|.++...+...+.++..++. |
T Consensus 93 ~~lE~~lA~~~g~-------e-~al~~~SG~~An~~~i~~l~~~~d~----i~~d~~~h~s~~~G~~~~~a~~~~~~~~d 160 (401)
T d1fc4a_ 93 KELEQKLAAFLGM-------E-DAILYSSCFDANGGLFETLLGAEDA----IISDALNHASIIDGVRLCKAKRYRYANND 160 (401)
T ss_dssp HHHHHHHHHHHTC-------S-EEEEESCHHHHHHTTHHHHCCTTCE----EEEETTCCHHHHHHHHTSCSEEEEECTTC
T ss_pred HHHHHHHHHhhcC-------C-ceEEecchhhhhHHHHHHhcCCCcE----EEeCCcchHHHHccccccCceEEEEcCCC
Confidence 5788888888873 3 6889999999999999999999998 999999999999999998998887653 3
Q ss_pred cccccc--------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCc--------CCCCCCccE
Q 018172 118 ANTFDK--------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTP--------ITGAADHDI 180 (360)
Q Consensus 118 ~~~~~~--------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~--------~~~~~~~~i 180 (360)
.+.++. ...+.+|++.+..+..|...+ +++.++|+++|+++++||+|+.+.... .....+.++
T Consensus 161 ~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~di 240 (401)
T d1fc4a_ 161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDI 240 (401)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSE
T ss_pred hHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeE
Confidence 333322 245567777777778887776 788899999999999999998643221 112345789
Q ss_pred EEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh--ccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 181 MLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL--GSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 181 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
++.|++|.++ |...|++.+ +.++++.+...... .+.+.++....++...++.+ ...++.+++++++.+++
T Consensus 241 i~~tl~Ka~g--g~~Gg~v~g-~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~-----~~~~~~~~~l~~~~~~~ 312 (401)
T d1fc4a_ 241 ITGTLGKALG--GASGGYTAA-RKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV-----EAGSELRDRLWANARQF 312 (401)
T ss_dssp EEEESSSTTC--SSSCEEEEE-CHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHH
T ss_pred EEeecccccc--cCCcccccC-CHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhccc-----ccCHHHHHHHHHHHHHH
Confidence 9999999995 223488887 89999998755332 23345555555555555533 33456788899999999
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCC--CCCeEEEEecC-
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGA--DAKYARVSMLS- 332 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~--~~~~~R~s~~~- 332 (360)
.+.+...+. .+.... +..+.+.+.+. ..+.+.|.++||.+.+-.+... +...+|++++.
T Consensus 313 ~~~l~~~g~-~~~~~~--------------~pIv~v~~~~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~ 377 (401)
T d1fc4a_ 313 REQMSAAGF-TLAGAD--------------HAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAA 377 (401)
T ss_dssp HHHHHHTTC-CBCCSS--------------SSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTT
T ss_pred HhhhcccCC-ccCCCC--------------CCEEEEEECCHHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCC
Confidence 999988853 222111 11233344443 4677888899999876432221 24469999866
Q ss_pred -ChHHHHHHHHHHHHHHhch
Q 018172 333 -REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 333 -~~e~~~~~~~~l~~~~~~~ 351 (360)
++|++++++++|+++.++.
T Consensus 378 hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 378 HTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp CCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999997653
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.4e-20 Score=172.34 Aligned_cols=291 Identities=13% Similarity=0.078 Sum_probs=203.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCC-CcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH--HHHhCCeeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDG-RHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE--TDYLRSGLYKW 114 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~-~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~--~~~~g~~~~~~ 114 (360)
+.++|+.++++++. ++ ..|++|+|+|++++.++..++.+|+. +++....+...... +...+..+..+
T Consensus 54 ~~ea~~~l~~llg~------~~~~~ii~~gsgT~a~~~~i~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (388)
T d1h0ca_ 54 MDEIKEGIQYVFQT------RNPLTLVISGSGHCALEAALVNVLEPGDS----FLVGANGIWGQRAVDIGERIGARVHPM 123 (388)
T ss_dssp HHHHHHHHHHHHTC------CCSEEEEESSCHHHHHHHHHHHHCCSSCC----EEECBSSHHHHHHHHHHHHHC--CBCC
T ss_pred HHHHHHHHHHHhCC------CCCcEEEEcCcHHHHHHHHHHHhhccCCc----eeeecccceeeeecccccccccccccc
Confidence 38899999999996 43 36999999999999999999999998 88888777755433 34456666655
Q ss_pred cCCcc-cccc--------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEec
Q 018172 115 DGDAN-TFDK--------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFT 184 (360)
Q Consensus 115 ~~~~~-~~~~--------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S 184 (360)
..+.. .++. +.+++++++++.+|.||.+.+ +++.++|+++|+++++|.+++.+..+......+.++++.|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s 203 (388)
T d1h0ca_ 124 TKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSG 203 (388)
T ss_dssp BCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEE
T ss_pred ccCCccccchHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccccccccccccceeccc
Confidence 54422 1211 357899999999999999988 7788888889999999999998777777788889999999
Q ss_pred cccccCCCCceEEEEeecCHHHHHHHHHHH-----------------------hhccccCChHHHHHHHHHhcccCCCch
Q 018172 185 LSKCTGHAGSRIGWALVKDTEVARKMTRFI-----------------------ELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 185 ~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
.+|.++.++ .+|+++. .+..++.+.... .....+++.....++.+++..+..
T Consensus 204 ~~K~~~gp~-g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~--- 278 (388)
T d1h0ca_ 204 SQKALNAPP-GTSLISF-SDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAE--- 278 (388)
T ss_dssp SSSTTCCCT-TCEEEEE-CHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHH---
T ss_pred ccccccCCC-ceEEEee-cHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHH---
Confidence 999886433 4677776 677666653211 011122444445555555553321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHH-HHHHHhhCeeeeCCC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDC-EKLLRAERIMARGGR 317 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~l~~~gI~~~pg~ 317 (360)
..++.+..+.++..+++++.+...+...... .... ++. ..+.+.+++ .+++ ..++.++||.+..|.
T Consensus 279 ~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~-~~~~--------rs~-~i~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~ 348 (388)
T d1h0ca_ 279 QGLENSWRQHREAAAYLHGRLQALGLQLFVK-DPAL--------RLP-TVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGL 348 (388)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHTCCBSSC-SGGG--------BCT-TEEEEECCTTCCHHHHHHHHHHHHCEECEECC
T ss_pred hccccccccccchhHHHHHHHhhcCcccccC-CHHH--------cCC-eEEEEECCCCCCHHHHHHHHHhcCCEEEeCCc
Confidence 4477888888888899999998885433322 2111 111 133455543 2444 555566799999885
Q ss_pred CCCCCCCeEEEE-ec--CChHHHHHHHHHHHHHHhchhcc
Q 018172 318 RFGADAKYARVS-ML--SREEIFNIFLERLSAIQGGSISN 354 (360)
Q Consensus 318 ~f~~~~~~~R~s-~~--~~~e~~~~~~~~l~~~~~~~~~~ 354 (360)
..- ..+.+|+| ++ .++|++++++++|++++++.++.
T Consensus 349 ~~~-~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~ 387 (388)
T d1h0ca_ 349 GPS-TGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKK 387 (388)
T ss_dssp GGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred hhh-cCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 432 35689999 64 38999999999999999987654
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.85 E-value=1.6e-20 Score=174.50 Aligned_cols=288 Identities=10% Similarity=0.004 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh------cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL------SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLY 112 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l------~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~ 112 (360)
+++|+++++++|. ++++|++|+++|++++.++... ..+++. +++.+-.+.+........+.++.
T Consensus 73 e~~R~~iA~llga------~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~----vi~~~~~~~~~~~~~~~~~~~~~ 142 (404)
T d1qz9a_ 73 ERLGNRLATLIGA------RDGEVVVTDTTSINLFKVLSAALRVQATRSPERR----VIVTETSNFPTDLYIAEGLADML 142 (404)
T ss_dssp HHHHHHHHTTTTC------CTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCC----EEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC------CCCcEEEecCchHHHHHHhhhhhhhhcccCCCcE----EEEeccccchHHHHHHhhhheee
Confidence 6899999999997 6678999999999998876533 356777 88888777766555544444443
Q ss_pred eecC------Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEe
Q 018172 113 KWDG------DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLF 183 (360)
Q Consensus 113 ~~~~------~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~ 183 (360)
.+.. +.+.+.. +++|++|++++.+|.||..++ +.+.++|+++++++++|.++..+..+......+.++++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~ 222 (404)
T d1qz9a_ 143 QQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIG 222 (404)
T ss_dssp CSSCEEEEESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEE
T ss_pred eeceeccccccchhHHHhcCCCceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccccceEEEE
Confidence 3332 2222222 689999999999999999999 788888888999999999999877666666778899999
Q ss_pred ccccccCCCCceEEEEeecCHHHHHHHHHHH-----------------------hhccccCChHHHHHHHHHhcccCCCc
Q 018172 184 TLSKCTGHAGSRIGWALVKDTEVARKMTRFI-----------------------ELGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 184 S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
|.+|.+..+.-.+|+++. ++...+.+.... .....+.+......+...+..+...-
T Consensus 223 s~~K~~~~~~g~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (404)
T d1qz9a_ 223 CTYKYLNGGPGSQAFVWV-SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTD 301 (404)
T ss_dssp CSSSTTCCCTTCCCEEEE-CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSC
T ss_pred echhhcccCCceEEEEEe-chhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhh
Confidence 999976533334577776 555444432110 11112233344444444444333322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFG 320 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~ 320 (360)
...+++....+......+.+.+...+++.+..|.... ..+.++.+..++...+.+.|.++||.+.. .
T Consensus 302 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~---------~r~~~vsf~~~~~~~v~~~L~~~gi~~~~----r 368 (404)
T d1qz9a_ 302 MASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHA---------KRGSHVSFEHPEGYAVIQALIDRGVIGDY----R 368 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGG---------GBCSEEEEECTTHHHHHHHHHTTTEECEE----E
T ss_pred HHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCcc---------ceeeEEEEecCCHHHHHHHHHHCCCEEee----c
Confidence 2444444455555555566666666677766554221 22335667777778888999999997531 1
Q ss_pred CCCCeEEEEec---CChHHHHHHHHHHHHHHhch
Q 018172 321 ADAKYARVSML---SREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 321 ~~~~~~R~s~~---~~~e~~~~~~~~l~~~~~~~ 351 (360)
.++.+|||++ .++||+++++++|++++++.
T Consensus 369 -~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~~ 401 (404)
T d1qz9a_ 369 -EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 401 (404)
T ss_dssp -TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -CCCeEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 2578999985 38999999999999999874
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.82 E-value=2.6e-18 Score=156.93 Aligned_cols=283 Identities=10% Similarity=0.050 Sum_probs=194.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCc--EEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCC--cHHHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRH--IVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQ--YPAETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~--i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~--~~~~~~~~g~~~~~ 113 (360)
.++.|+.++++++. ++++ +++|+|+|++++.++..+..+++. +++....+.. ........+.....
T Consensus 35 ~~~~r~~l~~l~~~------~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (361)
T d1m32a_ 35 VEQIRQQLTALATA------SEGYTSVLLQGSGSYAVEAVLGSALGPQDK----VLIVSNGAYGARMVEMAGLMGIAHHA 104 (361)
T ss_dssp HHHHHHHHHHHHCS------SSSEEEEEEESCHHHHHHHHHHHSCCTTCC----EEEEESSHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHhCC------CCCCEEEEECCCHHHHHHHHHHHhhhhccc----cceeeehhhhhhHHHHhhhhhccccc
Confidence 38999999999997 5544 778899999999999999988887 5555444332 23334445665554
Q ss_pred ecCCcccc----------ccCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEE
Q 018172 114 WDGDANTF----------DKNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIML 182 (360)
Q Consensus 114 ~~~~~~~~----------~~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~ 182 (360)
...+...- ..+++++++.+++.+|-||...+ +.+.++|+++|+++++|.+++.+..+...+..+.++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~ 184 (361)
T d1m32a_ 105 YDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLI 184 (361)
T ss_dssp EECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEE
T ss_pred ccccccCCccchhhHHHHHhccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccccccceEE
Confidence 44322111 12578999999999999999998 77888889899999999999987777667888999999
Q ss_pred ecccccc-CCCCceEEEEeecCHHHHHHHH------------------HHHhhccccCChHHHHHHHHHhcccCCCchhH
Q 018172 183 FTLSKCT-GHAGSRIGWALVKDTEVARKMT------------------RFIELGSIGVSKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 183 ~S~sK~~-~~~G~r~G~~~~~~~~~~~~l~------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
+|.+|.+ |++| +|++.. .++..+.+. ........+++.....++...+..... +..
T Consensus 185 ~s~~K~l~gp~G--~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~--~~~ 259 (361)
T d1m32a_ 185 SSANKCIQGVPG--FAFVIA-REQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAK--EGG 259 (361)
T ss_dssp EESSSTTCCCSS--EEEEEE-EHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH--HTH
T ss_pred eeecccccCCCC--ceEEEe-chhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHH--hcc
Confidence 9999977 5567 777777 454443321 111222334556666666665553322 144
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-----hHHHHHHHHhhCeeeeCCCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-----DEDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gI~~~pg~~ 318 (360)
.+...++.....+.+.+.+...+... ..+... ++.. .+.+..++ ..++.+.|.++||.+.+|..
T Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~g~~~-~~~~~~---------rs~~-v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G~~ 328 (361)
T d1m32a_ 260 VAARHQRYQQNQRSLVAGMRALGFNT-LLDDEL---------HSPI-ITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKV 328 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCB-SSCGGG---------BCSS-EEEEECCCCTTCCHHHHHHHHHHTTEECEECCC
T ss_pred hhhhHHHHHHHHHHHHHHHhhcCCcc-cCChhh---------cCCc-EEEEECCCCCCCCHHHHHHHHHHCCcEEECCCc
Confidence 55666777777778888888775332 222211 1111 22333332 27788899999999988754
Q ss_pred CCCCCCeEEEEec--CChHHHHHHHHHHHHHH
Q 018172 319 FGADAKYARVSML--SREEIFNIFLERLSAIQ 348 (360)
Q Consensus 319 f~~~~~~~R~s~~--~~~e~~~~~~~~l~~~~ 348 (360)
. .++++|+|.. .+++|+++++++|++++
T Consensus 329 ~--~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 329 S--QSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp S--SSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred C--CCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 3 3678999953 38999999999999875
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=1.3e-19 Score=163.25 Aligned_cols=275 Identities=14% Similarity=0.083 Sum_probs=175.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH---HHHHhCCeeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA---ETDYLRSGLYKW 114 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~---~~~~~g~~~~~~ 114 (360)
..+|++.+++++|. + ++++++|+|+++..++..+.++||. +++..+.+..+.. .....+..++.+
T Consensus 36 ~~~le~~lA~~~G~-------~-~~~~~~sGt~A~~~al~a~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (343)
T d1m6sa_ 36 INELERLAAETFGK-------E-AALFVPSGTMGNQVSIMAHTQRGDE----VILEADSHIFWYEVGAMAVLSGVMPHPV 103 (343)
T ss_dssp HHHHHHHHHHHTTC-------S-EEEEESCHHHHHHHHHHHHCCTTCE----EEEETTCHHHHSSTTHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHCC-------C-eEEEeCCHHHHHHHHHHHHhccCCc----eeccccccceeeecccccccccceeecc
Confidence 39999999999994 3 6888889999999999999999998 8888887765543 333445555555
Q ss_pred cCCccccc---------c----CCCeeEE-EEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCCCCCc----C
Q 018172 115 DGDANTFD---------K----NNGAYIE-VVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWPQYTP----I 172 (360)
Q Consensus 115 ~~~~~~~~---------~----~~~~~~i-~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~~~~~----~ 172 (360)
+.+..... . .+++..+ +...++|+.|.+++ +.+.++|++++++++.|+++....... .
T Consensus 104 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~ 183 (343)
T d1m6sa_ 104 PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPV 183 (343)
T ss_dssp CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCH
T ss_pred ccccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccch
Confidence 43221111 1 1344544 55567778888876 355677888999999999987421100 0
Q ss_pred -CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 173 -TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 173 -~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
.........+.+.+| +..|.+.|+++. ..+.+............+.+.....++...... ..........
T Consensus 184 ~~~~~~~~~~~~~~~~--~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~ 254 (343)
T d1m6sa_ 184 KEYAGYADSVMFCLSK--GLCAPVGSVVVG-DRDFIERARKARKMLGGGMRQAGVLAAAGIIAL------TKMVDRLKED 254 (343)
T ss_dssp HHHHHTCSEEEEESSS--TTCCSSCEEEEE-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHH------HHSSTTHHHH
T ss_pred hhhccccccccccccc--cccccccccccc-cHHHHhhhHhhCcccccccchhHHHHHhhhhhh------hhhHHHHHHH
Confidence 011112233333333 334556788887 788877777666555555544444444332221 1111222334
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeCCCCCCCCCCeEE
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARGGRRFGADAKYAR 327 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~pg~~f~~~~~~~R 327 (360)
.++...+.+.+..++......+ ..++++++++++. ..+.+.|+++||.++|. .++++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~a~~l~~~L~~~Gi~v~~~-----~~~~iR 316 (343)
T d1m6sa_ 255 HENARFLALKLKEIGYSVNPED-------------VKTNMVILRTDNLKVNAHGFIEALRNSGVLANAV-----SDTEIR 316 (343)
T ss_dssp HHHHHHHHHHHHHHTCBCCGGG-------------CCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEE-----ETTEEE
T ss_pred HHHHHHhhhHHHHhccCccCCC-------------CCceEEEEEeCCCcccHHHHHHHHHHCCCEEecC-----CCCEEE
Confidence 4555556666666654443333 2344778877642 67888899999999874 256899
Q ss_pred EEecC--ChHHHHHHHHHHHHHHhch
Q 018172 328 VSMLS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 328 ~s~~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
|+++. ++|++|+++++|++++++.
T Consensus 317 i~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 317 LVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 98855 8999999999999999864
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=1.1e-18 Score=160.91 Aligned_cols=291 Identities=10% Similarity=0.016 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc---CCCCCCCceEEEeCCCCCCc--HHHHHHhCCeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS---SPGGPEPISVVSAAPYYSQY--PAETDYLRSGLYK 113 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~---~~gd~~~~~vl~~~p~~~~~--~~~~~~~g~~~~~ 113 (360)
.++++.+++.++.. .. ...+.|++|+|+|++++.++..+. ++||+ |++..-.+... ...++..|.....
T Consensus 39 ~~~~~~~r~~~~~~-~~-~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~----vlv~~~~~~~~~~~~~~~~~~~~~~~ 112 (382)
T d2bkwa1 39 QRVLKNTRAVFKSA-AA-SKSQPFVLAGSGTLGWDIFASNFILSKAPNKN----VLVVSTGTFSDRFADCLRSYGAQVDV 112 (382)
T ss_dssp HHHHHHHHHHTTCC-GG-GTCEEEEEESCTTHHHHHHHHHHSCTTCSCCE----EEEECSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhhh-cC-CCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCc----eEEEEechhhhhhhhhcccccccccc
Confidence 44555555554421 01 134579999999999999999986 56777 88887666543 3445566877776
Q ss_pred ecCCccc--cc--------cCCCeeEEEEcCCCCCCcccch-HHHHHHhhh--cCcEEEEeecccCCCCCcCCCCCCccE
Q 018172 114 WDGDANT--FD--------KNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRS--AEGKLIHDLAYYWPQYTPITGAADHDI 180 (360)
Q Consensus 114 ~~~~~~~--~~--------~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~--~~~~li~D~ay~~~~~~~~~~~~~~~i 180 (360)
+.....+ .. .+.+++++++++.+|.||...+ +.+.++|++ +++++++|.+++.+..+......+.++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~ 192 (382)
T d2bkwa1 113 VRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDF 192 (382)
T ss_dssp ECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSE
T ss_pred ccccCCCCccchhHHHHHhhhccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccccccccccCeeE
Confidence 6432211 11 1357899999999999999988 555555543 569999999999888888888999999
Q ss_pred EEecccccc-CCCCceEEEEeecCHHHHHHHHHHH--------------------------hhccccCChHHHHHHHHHh
Q 018172 181 MLFTLSKCT-GHAGSRIGWALVKDTEVARKMTRFI--------------------------ELGSIGVSKESQLRAAKIL 233 (360)
Q Consensus 181 ~~~S~sK~~-~~~G~r~G~~~~~~~~~~~~l~~~~--------------------------~~~~~~~~~~~~~~~~~~l 233 (360)
++.|.+|.+ |++| +|+++. .+++.+.+.... .....+++.....++.++|
T Consensus 193 ~~~s~~K~l~gP~G--~g~l~v-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL 269 (382)
T d2bkwa1 193 ALTASQKAIGAPAG--LSISLC-SSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVAL 269 (382)
T ss_dssp EEEESSSTTCCCSC--EEEEEE-CHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHH
T ss_pred EeecccccCcCCCc--hhhhhc-cHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHH
Confidence 999999988 7788 888888 777766543211 1122345666667777777
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeee
Q 018172 234 GIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMA 313 (360)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~ 313 (360)
+.+.. ..++....+.++.++++++.+..........+.... ..+. ..+.+..+++.++.+.|+++||.+
T Consensus 270 ~~~~~---~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~-------~~s~-~v~~~~~~~~~~~~~~L~~~gi~i 338 (382)
T d2bkwa1 270 KEILE---EGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSN-------MSAH-GLTAVYVADPPDVIAFLKSHGVVI 338 (382)
T ss_dssp HHHHH---HCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSST-------TBCS-SCEEEECSCHHHHHHHHHHTTEEC
T ss_pred HHHHH---hhhhhhHHHHHHHHHHHHHHhhhcccccccccCchh-------ccCC-cEEEEcCCCHHHHHHHHHHCCeEE
Confidence 75432 556777777788888888888765443333221111 0011 134566677788899999999999
Q ss_pred eCCCCCCCCCCeEEEE-ecC--ChHHHHHHHHHHHHHHh
Q 018172 314 RGGRRFGADAKYARVS-MLS--REEIFNIFLERLSAIQG 349 (360)
Q Consensus 314 ~pg~~f~~~~~~~R~s-~~~--~~e~~~~~~~~l~~~~~ 349 (360)
..|..-....+.+||| ++. ++|+++.++++|..+..
T Consensus 339 ~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~ 377 (382)
T d2bkwa1 339 AGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKL 377 (382)
T ss_dssp BCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHH
T ss_pred ECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH
Confidence 9885433345789998 533 56666666666655444
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.81 E-value=4.9e-18 Score=154.53 Aligned_cols=286 Identities=15% Similarity=0.169 Sum_probs=196.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~ 113 (360)
...|++.++++.+. + ..++++++..|+..++..++++||+ |++++..|......++. .|+++..
T Consensus 61 ~~~LE~~la~LEg~-------~-~a~~~~SGmaAi~~~l~~l~~~Gd~----vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~ 128 (392)
T d1gc0a_ 61 LNLLEARMASLEGG-------E-AGLALASGMGAITSTLWTLLRPGDE----VLLGNTLYGCTFAFLHHGIGEFGVKLRH 128 (392)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESSHHHHHHHHHHHHCCTTCE----EEEESSCCSHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC-------c-ceeehhhHHHHHHHHHHhhccCCCe----eecccccchhhhhhhhhhhccCCccccc
Confidence 47899999999883 3 5777888899999999999999999 99999999999887655 4999888
Q ss_pred ecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCC-CCCcCCCCCCccEEEeccccc
Q 018172 114 WDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWP-QYTPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~-~~~~~~~~~~~~i~~~S~sK~ 188 (360)
++. |.+.+.. +++|++|++.+|+|||..+.+ +.+.++|+++|+++++|+.|..+ ...| -..+.++++.|.+|.
T Consensus 129 ~d~~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~P--l~~GaDivihS~TKy 206 (392)
T d1gc0a_ 129 VDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRP--LELGADLVVHSATKY 206 (392)
T ss_dssp ECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCG--GGGTCSEEEEETTTT
T ss_pred CCccCHHHHHHhCCCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccccCh--HHhCCCEEEEeccee
Confidence 865 3455554 688999999999999999999 78888999999999999998743 1222 256789999999998
Q ss_pred cC-CCCceEEEEeecCHHHHHHHH--HHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 018172 189 TG-HAGSRIGWALVKDTEVARKMT--RFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS 265 (360)
Q Consensus 189 ~~-~~G~r~G~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (360)
++ ....-.|.+++ +.+.+..++ ..+...+...++.....+...++ . +.-..++..++...+.+.|+++
T Consensus 207 i~Ghsd~~~G~v~~-~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~-------T-L~lRm~~~~~nA~~lA~~L~~h 277 (392)
T d1gc0a_ 207 LSGHGDITAGIVVG-SQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIK-------T-LNLRMDRHCANAQVLAEFLARQ 277 (392)
T ss_dssp TTCSSSCCCEEEEE-CHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHT-------T-HHHHHHHHHHHHHHHHHHHHTC
T ss_pred ecCCcccccccccc-hhHHHHHHHHHHHHHccCCcCChhhHHHHHhccc-------c-HHHHHHHHHHHHHHHHHHHHhC
Confidence 85 34455566766 777776553 44555677888888888877665 2 3344445567778888999999
Q ss_pred CCcccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCC---------------------
Q 018172 266 GVFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRF--------------------- 319 (360)
Q Consensus 266 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f--------------------- 319 (360)
+.+..+.+++.. +..........+..+.+.++.+ +.+.+.+..-.+. ..+..+
T Consensus 278 p~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~~f~~~L~l~-~~a~SlGg~eSLi~~pa~~th~~~~~e 356 (392)
T d1gc0a_ 278 PQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLF-SRAVSLGDAESLAQHPASMTHSSYTPE 356 (392)
T ss_dssp TTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSS-EECSCCSCSSCEEECGGGTTTSSSCHH
T ss_pred CCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHHHHHHHHhCCcc-eEeeccCCcChhhcCccccccccCCHH
Confidence 766654443211 1111122233345667777655 4444444443432 222222
Q ss_pred -----CCCCCeEEEEecCChHHHHHHHHHHHHHHh
Q 018172 320 -----GADAKYARVSMLSREEIFNIFLERLSAIQG 349 (360)
Q Consensus 320 -----~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~ 349 (360)
|..++.+|||++. |+.+.+++.|.+.++
T Consensus 357 ~r~~~Gi~~~liRlSVGl--Ed~eDLi~Dl~~AL~ 389 (392)
T d1gc0a_ 357 ERAHYGISEGLVRLSVGL--EDIDDLLADVQQALK 389 (392)
T ss_dssp HHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCeEEEEeee--CCHHHHHHHHHHHHH
Confidence 2346789999976 233444555555544
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.80 E-value=7.2e-18 Score=154.83 Aligned_cols=280 Identities=17% Similarity=0.092 Sum_probs=191.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
..+|++.+++++|+ + ++++++++|+|+++++.++ +++||+ |+++..+|.+...++...|.+++.+++
T Consensus 33 v~~~E~~la~~~g~-------~-~ai~~~sgt~Al~~al~al~~~~gde----Vi~~~~~~~~~~~ai~~~g~~pv~~d~ 100 (376)
T d1mdoa_ 33 NQELEAAFCRLTGN-------Q-YAVAVSSATAGMHIALMALGIGEGDE----VITPSMTWVSTLNMIVLLGANPVMVDV 100 (376)
T ss_dssp HHHHHHHHHHHHCC-------S-EEEEESCHHHHHHHHHHHTTCCTTCE----EEEESSSCHHHHHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHHCc-------C-eEEEeCCHHHHHHHHHHHhCCCCCCE----EEEecccccccccchhccccceeeecc
Confidence 39999999999995 3 6777778899999999999 889998 999999999999999999999999988
Q ss_pred Ccccccc---------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-C-cCCCCCCccEEEec
Q 018172 117 DANTFDK---------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-T-PITGAADHDIMLFT 184 (360)
Q Consensus 117 ~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-~-~~~~~~~~~i~~~S 184 (360)
+.+.+.. +++|++|+++ |..|...+ +.+..+|+++|+++|+|+|++.+.. . ...+..+..++.++
T Consensus 101 ~~~~~~~d~~~l~~~i~~~tkaIi~~---h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~ 177 (376)
T d1mdoa_ 101 DRDTLMVTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFH 177 (376)
T ss_dssp CTTTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECC
T ss_pred cccccCCCHHHHHHhcCCCCeEEEEe---CCCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccCC
Confidence 7664433 4689999865 46888766 6788889999999999999985432 1 11233343334444
Q ss_pred cccccCCCCceEEEEeecCHHHHHHHHHHHhhccc--------------------cC-ChHHHHHHHHHhcccCCCchhH
Q 018172 185 LSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI--------------------GV-SKESQLRAAKILGIVSDDYPNF 243 (360)
Q Consensus 185 ~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~--------------------~~-~~~~~~~~~~~l~~~~~~~~~~ 243 (360)
.+|.++ +| ..|.+++.++++.+.++..+..+.. +. ..+.-..++..+..+ ..
T Consensus 178 ~~K~l~-~g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL-----~~ 250 (376)
T d1mdoa_ 178 AIKNIT-CA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL-----QK 250 (376)
T ss_dssp TTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH-----HT
T ss_pred CcCCCC-CC-CCCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhh-----hh
Confidence 568876 44 3588888889998888877643211 00 011111111222211 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCccc-ccCCc------hHHHHHHHHhhCeeeeCC
Q 018172 244 FEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAW-LESKE------DEDCEKLLRAERIMARGG 316 (360)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~l~~~gI~~~pg 316 (360)
+++..++.++..+++.+.|++++......+..... ...+.+ +.+.. .+.+.+.|+++||.+++.
T Consensus 251 ~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~~ 321 (376)
T d1mdoa_ 251 LDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHI---------HAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLH 321 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEE---------CCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCC
T ss_pred hhHHHHHHhhhhhhhhhhccccccccccccccccc---------ccccccccccccccchhhHHHHHHHHHHCCCCeeeE
Confidence 66667777888888999999887665544432210 000111 22221 156888899999998754
Q ss_pred CC-----------CCC---------CCCeEEEEecC--ChHHHHHHHHHHHHHH
Q 018172 317 RR-----------FGA---------DAKYARVSMLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 317 ~~-----------f~~---------~~~~~R~s~~~--~~e~~~~~~~~l~~~~ 348 (360)
.. +.. ....+.+.+.. +++++++.++.|++++
T Consensus 322 y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 322 FRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp CCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 21 110 02347776544 8899999999999986
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.80 E-value=3e-17 Score=148.94 Aligned_cols=287 Identities=11% Similarity=0.069 Sum_probs=197.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~ 113 (360)
...|+++++.+.+. + ..++++++..|+. ++..++++||+ |++..+.|......++. .|.++..
T Consensus 51 ~~~le~~la~LE~~-------~-~a~~fsSGMaAis-all~ll~~Gd~----vv~~~~~Yg~t~~l~~~~~~~~gi~~~~ 117 (380)
T d1ibja_ 51 RDALESLLAKLDKA-------D-RAFCFTSGMAALS-AVTHLIKNGEE----IVAGDDVYGGSDRLLSQVVPRSGVVVKR 117 (380)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESSHHHHHH-HHHTTSCTTCE----EEEESSCCHHHHHHHHHTSGGGTCEEEE
T ss_pred HHHHHHHHHHHcCC-------c-eEEehhhHHHHHH-HHHHhhCCCCE----EEEEecccccccchhhhhhccccccccc
Confidence 37889999998873 3 4566666678886 56678899998 99999999999877665 4888877
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-CCcCCCCCCccEEEeccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ-YTPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~-~~~~~~~~~~~i~~~S~sK~ 188 (360)
++.. .+.+.. +++|++|++.+|+|||..+.+ +.+.++|+++|+++|+|+.++.+- ..+ -..+.++++.|++|.
T Consensus 118 ~d~~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~P--l~~GaDiVvhS~TKy 195 (380)
T d1ibja_ 118 VNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRP--LELGADIVMHSATKF 195 (380)
T ss_dssp ECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCG--GGTTCSEEEEETTTT
T ss_pred cCcchHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccccccccccc--cccCCCEEEecccce
Confidence 7643 233433 678999999999999999999 788899999999999999987532 223 356789999999998
Q ss_pred cCC-CCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 189 TGH-AGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 189 ~~~-~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
++- ...-.|.++.++.++.+.+...+...+...++.....+...++ . +.-..++..++...+.+.|++++.
T Consensus 196 i~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~-------T-l~lRm~~~~~nA~~lA~~L~~hp~ 267 (380)
T d1ibja_ 196 IAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIK-------T-MALRIEKQQENARKIAMYLSSHPR 267 (380)
T ss_dssp TTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHT-------T-HHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred eccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcch-------h-hhhhHHHHHHHHHHHHHHHHhCCC
Confidence 853 3334566666678888989888887888899998888888776 2 334444556777889999999987
Q ss_pred cccCCCCCcc----cccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCC------------------------
Q 018172 268 FGLPEYPLEY----CNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRF------------------------ 319 (360)
Q Consensus 268 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f------------------------ 319 (360)
+..+.++|.. +..........+..+.+.+.+.+...+.+++-.+. ..+..+
T Consensus 268 V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~l~-~~a~SlG~~~SLi~~p~~~th~~~~~e~r~ 346 (380)
T d1ibja_ 268 VKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYF-SIAVSFGSVKSLISMPCFMSHASIPAEVRE 346 (380)
T ss_dssp CCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSS-EECSCCCSSSCEEECTTTTTTCSCCSSSSS
T ss_pred eeEEeccccccCccccccccccccccccccccccHHHHHHHHHHhCCcC-eEeeccCCccccccCchhhhhhcCCHHHHH
Confidence 7765555421 11111112233334455555544444444443322 111111
Q ss_pred --CCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 320 --GADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 320 --~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
|..++.+|||++. |+.+.+++.|++.++.
T Consensus 347 ~~Gi~~~lvRlSvGl--E~~eDLi~Dl~qAl~~ 377 (380)
T d1ibja_ 347 ARGLTEDLVRISAGI--EDVDDLISDLDIAFKT 377 (380)
T ss_dssp SSSCCTTCEEEECCS--SCHHHHHHHHHHHHHS
T ss_pred HcCCCcCeEEEEecc--CCHHHHHHHHHHHHHh
Confidence 2235679999976 2334456666666654
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.79 E-value=3.4e-17 Score=148.98 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=197.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHH----HhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETD----YLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~----~~g~~~~~ 113 (360)
...|+++++.+.+. + ..+++++++.|+..++..++++||+ |++++..|......++ ..|+++..
T Consensus 65 ~~~LE~~la~LEgg-------~-~a~~~sSGmaAi~~~l~~ll~~Gd~----vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~ 132 (397)
T d1y4ia1 65 TDALEKKLAVLERG-------E-AGLATASGISAITTTLLTLCQQGDH----IVSASAIYGCTHAFLSHSMPKFGINVRF 132 (397)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESSHHHHHHHHHHHHCCTTCE----EEEESSSCHHHHHHHHTHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCC-------c-cceeehHHHHHHHHHHhhccCCCCe----eeeecccccccchhhhcccCCCceEeec
Confidence 47888889988873 3 5677778899999999999999999 9999999998877654 46999998
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++.. .+.+.. +++|++|++.+|.|||..+.+ +.+.++++++|+++++|+.+..+ +..-+-..+.++++.|++|.+
T Consensus 133 vd~~d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP-~~~~Pl~~GaDivihS~TKyi 211 (397)
T d1y4ia1 133 VDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSP-YCQQPLQLGADIVVHSVTKYI 211 (397)
T ss_dssp ECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCT-TTCCGGGGTCSEEEEETTTTT
T ss_pred cCCCCHHHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCc-ccCcchhcCCCEEEEehhhhc
Confidence 8744 344443 678999999999999999999 77888899999999999998753 122223567899999999988
Q ss_pred CC-CCceEEEEeecCHHHHHHH--HHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 190 GH-AGSRIGWALVKDTEVARKM--TRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 190 ~~-~G~r~G~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
+- ...=.|.+++ +.+.+..+ ...+...+...++.....+...++ . +.-..++-.++...+.+.|++++
T Consensus 212 ~Ghsdvl~G~v~~-~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~-------T-L~lRm~~~~~nA~~lA~~L~~hp 282 (397)
T d1y4ia1 212 NGHGDVIGGIIVG-KQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVK-------T-LGIRMERHCENALKIARFLEGHP 282 (397)
T ss_dssp TCSSCCCCEEEEE-CHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHT-------T-HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCcceeeeccCC-CHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcC-------c-HHHHHHHHHHHHHHHHHHHHhCC
Confidence 53 3344455665 77776654 345555677888888888877776 2 33334445677788889999998
Q ss_pred CcccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCC----------------------
Q 018172 267 VFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRF---------------------- 319 (360)
Q Consensus 267 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f---------------------- 319 (360)
.+..+.+++.. +........+.+..+.+.+++. +...+.+.+-.+. ..+..+
T Consensus 283 ~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~L~l~-~~a~SlGg~eSLi~~p~~~th~~~~~e~ 361 (397)
T d1y4ia1 283 SITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELC-LLAVSLGDTETLIQHPASMTHSPVAPEE 361 (397)
T ss_dssp TEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSS-EECSCCSCSSCEEECTTTTTTSSSCHHH
T ss_pred CcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHHHHHHHHcCCcc-ceeeccCcccceeeCccccccccCCHHH
Confidence 77655444321 1111111223455677777665 4445555444433 222222
Q ss_pred ----CCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 320 ----GADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 320 ----~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
|..++.+|||++. |+.+.+++.|.+.+++
T Consensus 362 r~~~Gi~~~liRlsvGl--Ed~~DLi~Dl~~AL~~ 394 (397)
T d1y4ia1 362 RLKAGITDGLIRLSVGL--EDPEDIINDLEHAIRK 394 (397)
T ss_dssp HHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred HHHcCCCcCEEEEEecc--CCHHHHHHHHHHHHHH
Confidence 2246689999976 2233345555555543
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.9e-17 Score=150.33 Aligned_cols=290 Identities=13% Similarity=0.101 Sum_probs=199.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~ 113 (360)
...|+++++++.+. + ..++++++..|+..++..++++||+ |++++..|......+.. .|.++..
T Consensus 52 ~~~le~~la~LEgg-------~-~a~~~sSGMaAi~~~l~~l~~~gd~----vv~~~~~yg~t~~~~~~~~~~~g~~~~~ 119 (384)
T d1cs1a_ 52 RDVVQRALAELEGG-------A-GAVLTNTGMSAIHLVTTVFLKPGDL----LVAPHDCYGGSYRLFDSLAKRGCYRVLF 119 (384)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESSHHHHHHHHHHHHCCTTCE----EEEETTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHHHHHhCC-------C-ceEEecChHHHHHHHHhhcccccce----ecccccccchhhhhhhhhhccccccccc
Confidence 47899999999883 3 5777788899999999999999998 99999999888666554 4777766
Q ss_pred ecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccccc
Q 018172 114 WDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 114 ~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~ 189 (360)
++. |.+.+.. .++|++|++.+|+|||..+.+ +.+.++++++|+++|+|+.+..+ +..-+-..+.+|++.|.+|.+
T Consensus 120 ~d~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP-~~~~Pl~~GaDiVvhS~TKyi 198 (384)
T d1cs1a_ 120 VDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSP-ALQNPLALGADLVLHSCTKYL 198 (384)
T ss_dssp ECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCT-TTCCGGGGTCSEEEEETTTTT
T ss_pred ccCCCHHHHHhhccccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCc-ccccccccCCCEEEEcccccc
Confidence 653 3344433 578999999999999999999 78888899999999999998643 222223567899999999988
Q ss_pred C-CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018172 190 G-HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVF 268 (360)
Q Consensus 190 ~-~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 268 (360)
+ ....=.|.+++.++.+.+.+...+...+...++.....+...++ . +.-..++..++...+.+.|+.++.+
T Consensus 199 ~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~-------T-L~lRm~~~~~nA~~lA~~L~~hp~V 270 (384)
T d1cs1a_ 199 NGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR-------T-LVPRMELAQRNAQAIVKYLQTQPLV 270 (384)
T ss_dssp TCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT-------T-HHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred ccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccc-------h-hHHHHHHHHHHHHHHHHhcccCCce
Confidence 5 33344466777678888888877777778888888888877666 3 2333344467778889999999877
Q ss_pred ccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCC------------------------
Q 018172 269 GLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGGRRF------------------------ 319 (360)
Q Consensus 269 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f------------------------ 319 (360)
..+.++|-. +........+.+..+.+.++.+ +.+.+.+.+-.+. ..+..+
T Consensus 271 ~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~-~~a~SlGg~eSLi~~p~~~th~~~~~e~r~ 349 (384)
T d1cs1a_ 271 KKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLF-TLAESLGGVESLISHAATMTHAGMAPEARA 349 (384)
T ss_dssp EEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSS-EEBSCCCSSSCEEEEGGGTTTTTSCHHHHH
T ss_pred eeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHHhCCcc-eeccccCCccceeccccccccccCCHHHHH
Confidence 655544321 1111111233455666776554 4455555443432 222222
Q ss_pred --CCCCCeEEEEecCChHHHHHHHHHHHHHHhch
Q 018172 320 --GADAKYARVSMLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 320 --~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
|..++.+|+|++. |+.+.+++.|++.++..
T Consensus 350 ~~Gi~~~lvRlSvGl--Ed~eDLi~Dl~~AL~aa 381 (384)
T d1cs1a_ 350 AAGISETLLRISTGI--EDGEDLIADLENGFRAA 381 (384)
T ss_dssp HHTCCTTEEEEECCS--SCHHHHHHHHHHHHHHH
T ss_pred hcCCCcCeEEEEecc--CCHHHHHHHHHHHHHHh
Confidence 2245689999966 22344555555555544
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.78 E-value=4.4e-17 Score=148.47 Aligned_cols=252 Identities=13% Similarity=0.123 Sum_probs=181.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~ 113 (360)
...|+++++++.+. + ..+++++++.|+..++..++++||+ |+.+...|......++. .|.++..
T Consensus 69 ~~~LE~~la~LEgg-------~-~a~~~sSGMaAi~~~l~~l~~~Gd~----iv~~~~~Yg~t~~l~~~~~~~~gi~~~~ 136 (398)
T d1qgna_ 69 TVVLEEKISALEGA-------E-STLLMASGMCASTVMLLALVPAGGH----IVTTTDCYRKTRIFIETILPKMGITATV 136 (398)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHHSCSSCE----EEEETTSCHHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC-------c-eEEEecCcchHHHHHHhhccccccc----ccccccccchhhhhhccccccccccccc
Confidence 37899999998873 3 6778888899999999999999999 99999999988777554 5888777
Q ss_pred ecCC-ccccc---cCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccc
Q 018172 114 WDGD-ANTFD---KNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~~~-~~~~~---~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~ 188 (360)
++.. ..... .++++++|++.+|.|||..+.+ +.+.++|+++|+++|+|+.+..+ +..-+-..+.++++.|++|.
T Consensus 137 ~~~~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP-~~~~Pl~~GaDiVihS~TKy 215 (398)
T d1qgna_ 137 IDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATP-LNQKALALGADLVLHSATKF 215 (398)
T ss_dssp ECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCT-TTCCTTTTTCSEEEECTTTT
T ss_pred ccccchhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeecc-ccCCchhhCCCEEEEechhh
Confidence 7633 22222 2578999999999999999999 78888899999999999998743 22222356789999999998
Q ss_pred cCCCCce-EEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018172 189 TGHAGSR-IGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGV 267 (360)
Q Consensus 189 ~~~~G~r-~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (360)
++-.+-- .|.++. +.++++.++..+...+...++.....+...++ . +.-..++..++...+.+.|.+++.
T Consensus 216 ~~Ghsdv~~G~v~~-~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~-------T-L~lRm~~~~~nA~~lA~~L~~hp~ 286 (398)
T d1qgna_ 216 LGGHNDVLAGCISG-PLKLVSEIRNLHHILGGALNPNAAYLIIRGMK-------T-LHLRVQQQNSTALRMAEILEAHPK 286 (398)
T ss_dssp TTCSSSCCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGG-------G-HHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred cCcccceeehhhcc-hhhhhhhhhhhcccCCCcCCHHHHHHHHhcch-------H-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8643333 455554 89999999888887788888888888877665 2 334445557777889999999987
Q ss_pred cccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhhCe
Q 018172 268 FGLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERI 311 (360)
Q Consensus 268 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI 311 (360)
+..+.++|-. +........+.+..+.+.++.+ +.+.+.+.+-.+
T Consensus 287 V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~~~L~l 335 (398)
T d1qgna_ 287 VRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKI 335 (398)
T ss_dssp EEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSS
T ss_pred eeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHHHHcCCc
Confidence 7655444321 1111122234445566666544 555555544443
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.75 E-value=8.5e-17 Score=147.48 Aligned_cols=286 Identities=13% Similarity=0.055 Sum_probs=191.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH--HHHHHhCCeeeeec
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP--AETDYLRSGLYKWD 115 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~--~~~~~~g~~~~~~~ 115 (360)
..++|+.++++++.. ....|++++|+|.+++.++..+..+|+. +++..-.+.... ......+.....+.
T Consensus 53 ~~~~r~~l~~ll~~~-----~~~~i~~~g~gT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (377)
T d1vjoa_ 53 MDEIQSLLRYVWQTE-----NPLTIAVSGTGTAAMEATIANAVEPGDV----VLIGVAGYFGNRLVDMAGRYGADVRTIS 123 (377)
T ss_dssp HHHHHHHHHHHHTCC-----CSCEEEESSCHHHHHHHHHHHHCCTTCE----EEEEESSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhCCC-----CCeEEEEcCcHHHHHHHHHHhccccccc----cceeeechhhhhhhhhhhhhcccccccc
Confidence 388888899998851 2347888899999999999999999987 776655554332 33444455555554
Q ss_pred CCcccccc---------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecc
Q 018172 116 GDANTFDK---------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTL 185 (360)
Q Consensus 116 ~~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~ 185 (360)
.+.+.... +.+++++.+++.+|.||...+ +.+.++++++|.++++|.+++.+..+...+..+.++++.|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~ 203 (377)
T d1vjoa_ 124 KPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCS 203 (377)
T ss_dssp CCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCS
T ss_pred cCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcccccccceeeecc
Confidence 33222111 357899999999999999988 67778888899999999999887777777888999999999
Q ss_pred ccccCCCCceEEEEeecCHHHHHHHHHHHh--------------------hccccCChHHHHHHHHHhcccCCCchhHHH
Q 018172 186 SKCTGHAGSRIGWALVKDTEVARKMTRFIE--------------------LGSIGVSKESQLRAAKILGIVSDDYPNFFE 245 (360)
Q Consensus 186 sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~--------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (360)
+|.++.|+ .+|++.. .+..++....... ......+.....++..+..... ....+
T Consensus 204 ~K~~~gp~-g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~g~~ 278 (377)
T d1vjoa_ 204 QKGLGCSP-GASPFTM-SSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIA---QEGLA 278 (377)
T ss_dssp SSTTCSCS-SCEEEEE-CHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHH---HHCHH
T ss_pred cccccCCC-EEEEecc-hhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhh---hcCch
Confidence 99765333 3666666 6776665432211 0111122223333333332211 15567
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc---hHHH-HHHHHhhCeeeeCCCCCCC
Q 018172 246 YGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE---DEDC-EKLLRAERIMARGGRRFGA 321 (360)
Q Consensus 246 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~l~~~gI~~~pg~~f~~ 321 (360)
....+.+++.+++.+.+...+...+..+ .. ++.+ .+.+.+++ ...+ ..++.++||.+..|...-
T Consensus 279 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~---------rs~~-v~~~~~p~~~~~~~l~~~L~~~~gI~v~~G~~~~- 346 (377)
T d1vjoa_ 279 NCWQRHQKNVEYLWERLEDIGLSLHVEK-EY---------RLPT-LTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGEL- 346 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBSSCG-GG---------BCSS-EEEEECCTTCCHHHHHHHHHHHHCEECEECCGGG-
T ss_pred HHHHHHHHHhhhhhhhhhccCceeecCh-Hh---------cCCe-EEEEECCCCCCHHHHHHHHHhcCCEEEecCcccc-
Confidence 7788888888999999988754333222 11 1211 23444543 3445 455677799999876442
Q ss_pred CCCeEEEE-ec--CChHHHHHHHHHHHHHHh
Q 018172 322 DAKYARVS-ML--SREEIFNIFLERLSAIQG 349 (360)
Q Consensus 322 ~~~~~R~s-~~--~~~e~~~~~~~~l~~~~~ 349 (360)
..+.+|+| +. .++|++++++++|+++++
T Consensus 347 ~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 347 AGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 35689999 44 378999999999999874
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.75 E-value=7.9e-17 Score=148.36 Aligned_cols=286 Identities=11% Similarity=0.057 Sum_probs=187.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCC-cEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcH--HHHHHhCCeeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGR-HIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYP--AETDYLRSGLYKW 114 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~-~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~--~~~~~~g~~~~~~ 114 (360)
+.++|+.++++++. +++ .|++++|+|.+++.++..+..+|+. +++....+.... ..++..+...+.+
T Consensus 52 ~~~~r~~L~~ll~~------~~~~~i~~~gsgT~a~ea~~~~l~~~~~~----vl~~~~g~~~~~~~~~~~~~~~~~~~~ 121 (388)
T d2ch1a1 52 MDEVKDGLRYIFQT------ENRATMCVSGSAHAGMEAMLSNLLEEGDR----VLIAVNGIWAERAVEMSERYGADVRTI 121 (388)
T ss_dssp HHHHHHHHHHHHTC------CCSCEEEESSCHHHHHHHHHHHHCCTTCE----EEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhCC------CCCeEEEEcCcHHHHHHHHHHHhcccccc----ccccccccccccchhhhhhhccccccc
Confidence 37888889999885 333 4667788999999999999998987 777766655443 3355567777766
Q ss_pred cCCccc-cc--------cCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEec
Q 018172 115 DGDANT-FD--------KNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFT 184 (360)
Q Consensus 115 ~~~~~~-~~--------~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S 184 (360)
..+... .. .+.+++++++++-+|.||...+ +.+.++|++++.++++|.+.+.+..+...+..+.++++.|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s 201 (388)
T d2ch1a1 122 EGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTG 201 (388)
T ss_dssp ECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECC
T ss_pred ccccccccchhhhhhhhccCCcceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccchhccCceEEEEc
Confidence 544321 11 1357899999999999999988 6777888889999999999998877777788899999999
Q ss_pred cccccC-CCCceEEEEeecCHHHHHHHHHHHh-----------------------hccccCChHHHHHHHHHhcccCCCc
Q 018172 185 LSKCTG-HAGSRIGWALVKDTEVARKMTRFIE-----------------------LGSIGVSKESQLRAAKILGIVSDDY 240 (360)
Q Consensus 185 ~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (360)
..|.++ ++| +|+++. .++..+.+..... ......+.....++...++.+..
T Consensus 202 ~~K~~~gp~G--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~-- 276 (388)
T d2ch1a1 202 AQKVLGAPPG--ITPISI-SPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAE-- 276 (388)
T ss_dssp CC-CCCCCSS--CEEEEE-CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHH--
T ss_pred cccccCCCCe--EEEEec-cHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHH--
Confidence 999774 455 677777 6766665532110 01122333444444444442211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHH-HHhhCeeeeCC
Q 018172 241 PNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKL-LRAERIMARGG 316 (360)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-l~~~gI~~~pg 316 (360)
...+....+.++........+...+..... +.... ++. ..+.+.++++ .++... +.++||.+.+|
T Consensus 277 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------rs~-~v~~~~~p~g~~~~~l~~~l~~~~gI~v~~G 345 (388)
T d2ch1a1 277 -EGLENQIKRRIECAQILYEGLGKMGLDIFV-KDPRH--------RLP-TVTGIMIPKGVDWWKVSQYAMNNFSLEVQGG 345 (388)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHHTCCBSS-CSGGG--------BCT-TEEEEECCTTCCHHHHHHHHHHHHCBCCBCC
T ss_pred -hhhHHHHHHHHHHHHHHHhhhhhccccccc-CCHHH--------hCC-eEEEEECCCCCCHHHHHHHHhhcCCEEEeCC
Confidence 333444444445545555555554322222 11111 111 1344555542 455444 46679999998
Q ss_pred CCCCCCCCeEEEE-ecC--ChHHHHHHHHHHHHHHhc
Q 018172 317 RRFGADAKYARVS-MLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 317 ~~f~~~~~~~R~s-~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
...- ..+.+|+| ++. ++|++++++++|+++++.
T Consensus 346 ~~~~-~~~~~RIs~~g~~~t~edI~~ll~alke~L~~ 381 (388)
T d2ch1a1 346 LGPT-FGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 381 (388)
T ss_dssp CGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred Cccc-cCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 6432 35689999 654 789999999999999986
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.75 E-value=3.2e-17 Score=154.71 Aligned_cols=292 Identities=13% Similarity=0.039 Sum_probs=178.5
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHHh-CCeeee--e
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDYL-RSGLYK--W 114 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~~~~--~ 114 (360)
+.++++.+|+++|. ++.+++++|+|+++..++.+++++||. |+++..+|.+....+..+ +..++. .
T Consensus 68 i~eae~~~A~~~ga-------~~a~f~~~Gtt~~n~a~i~a~~~~gd~----Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~ 136 (462)
T d1c4ka2 68 AVAAEKHAARVYNA-------DKTYFVLGGSSNANNTVTSALVSNGDL----VLFDRNNHKSVYNSALAMAGGRPVYLQT 136 (462)
T ss_dssp HHHHHHHHHHHTTC-------SEEEEESSHHHHHHHHHHHHHCCTTCE----EEEETTCCHHHHHHHTTTTCCEEEEECE
T ss_pred HHHHHHHHHHHhCC-------CeEEEECCchHHHHHHHHHHhcCCCCe----EEecccchHHHHHHHHHHhcCCceeeec
Confidence 59999999999995 446667788888888889999999998 999999999988765544 444332 2
Q ss_pred cCCcccc---------c----------------cCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC
Q 018172 115 DGDANTF---------D----------------KNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ 168 (360)
Q Consensus 115 ~~~~~~~---------~----------------~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~ 168 (360)
+.+..+. + ...+++++++.+.+|..|.+.+ +++.++|+++|+++++|+++....
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~ 216 (462)
T d1c4ka2 137 NRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE 216 (462)
T ss_dssp EECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred ccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccc
Confidence 2332221 0 0234555555555667999988 788888888999999999997421
Q ss_pred -CCcC----C--------CCCCccEEEeccccccCCCCceEEEEeecCHHH--------HHHHHHHHh-hccccCChHHH
Q 018172 169 -YTPI----T--------GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEV--------ARKMTRFIE-LGSIGVSKESQ 226 (360)
Q Consensus 169 -~~~~----~--------~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~--------~~~l~~~~~-~~~~~~~~~~~ 226 (360)
+.+. . ...+.+++++|+||+++.++ ..+++...+..+ .+.+.+... ..+.+++....
T Consensus 217 ~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~-~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~ 295 (462)
T d1c4ka2 217 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS-QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMY 295 (462)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT-TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHH
T ss_pred cccCcCCcchhhccccccccCCccEEEEecCccccccc-ceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHH
Confidence 1110 0 12345899999999998544 223443322211 112222211 22334444444
Q ss_pred HHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCc----------------------------cc
Q 018172 227 LRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLE----------------------------YC 278 (360)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----------------------------~~ 278 (360)
..+..+...+.. ...++..+...++.+++++.++++.+......... ..
T Consensus 296 asl~~a~~~~~~---~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (462)
T d1c4ka2 296 AALDVNAAMQEG---EAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWH 372 (462)
T ss_dssp HHHHHHHHHHSH---HHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTT
T ss_pred HHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcchhc
Confidence 444333433221 55667777778888888888888754332111000 00
Q ss_pred ccccccCCCCC-----CcccccCC--------------chHHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC--ChHHH
Q 018172 279 NFTGKFTNSHP-----GFAWLESK--------------EDEDCEKLLRAERIMARGGRRFGADAKYARVSMLS--REEIF 337 (360)
Q Consensus 279 ~~~~~~~~~~~-----~~~~~~~~--------------~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~--~~e~~ 337 (360)
.|.. ..... .=+.+..+ ....+.+.|+++||.+.- . +.+.+|++++. ++|++
T Consensus 373 ~~~~--~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~---~--~~~~i~~~~s~~~T~edi 445 (462)
T d1c4ka2 373 AYEG--YGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEK---S--DLNSILFLMTPAETPAKM 445 (462)
T ss_dssp CCTT--CCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSE---E--CSSEEEEECCTTCCHHHH
T ss_pred cccc--cCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeec---c--CCCeEEEEecCCCCHHHH
Confidence 0000 00000 00111111 125778889999997532 1 35689999876 99999
Q ss_pred HHHHHHHHHHHhch
Q 018172 338 NIFLERLSAIQGGS 351 (360)
Q Consensus 338 ~~~~~~l~~~~~~~ 351 (360)
++++++|.++.+..
T Consensus 446 d~li~aL~ei~r~~ 459 (462)
T d1c4ka2 446 NNLITQLLQLQRLI 459 (462)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=2.1e-16 Score=144.06 Aligned_cols=216 Identities=13% Similarity=0.051 Sum_probs=163.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~ 113 (360)
...|++.++++.+. +..+++++++.|+..++..++++||+ |+++...|......++. .|.++..
T Consensus 60 ~~~le~~la~LEg~--------~~a~~~~SGMaAi~~~l~~l~~~Gd~----iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~ 127 (391)
T d1cl1a_ 60 HFSLQQAMCELEGG--------AGCVLFPCGAAAVANSILAFIEQGDH----VLMTNTAYEPSQDFCSKILSKLGVTTSW 127 (391)
T ss_dssp HHHHHHHHHHHHTC--------SEEEEESSHHHHHHHHHHHHCCTTCE----EEEETTSCHHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC--------ccEEEeccccceeeehhhcccCCCCe----EEEecccccchhhhhhhccccccccccc
Confidence 47888888888873 36888888899999999999999999 99999999998877654 5888888
Q ss_pred ecC-Ccccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhhh--cCcEEEEeecccCCCCCcCCCCCCccEEEecccc
Q 018172 114 WDG-DANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRS--AEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSK 187 (360)
Q Consensus 114 ~~~-~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~--~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK 187 (360)
++. |.+.+.. ++++++|++.+|+||+..+.+ +.+.+++++ +|+++++|+.+..+- ..-+-..+.++++.|.+|
T Consensus 128 ~d~~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~-~~~Pl~~GaDivvhS~TK 206 (391)
T d1cl1a_ 128 FDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGV-LFKALDFGIDVSIQAATK 206 (391)
T ss_dssp ECTTCGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTT-SSCGGGGTCSEEEEETTT
T ss_pred ccCccccccccccccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchh-hhcccccccceEEeecch
Confidence 764 4455554 578999999999999999988 556666654 599999999987532 112234678999999999
Q ss_pred ccCCCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 188 CTGHAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 188 ~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
.++=-+ .=.|.++. ++++.+.+.......+...++.....+...++ . +.-..++..++...+.+.|++++
T Consensus 207 y~~GhsdvlgG~vv~-~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~-------T-L~lR~~~~~~nA~~vA~~L~~hp 277 (391)
T d1cl1a_ 207 YLVGHSDAMIGTAVC-NARCWEQLRENAYLMGQMVDADTAYITSRGLR-------T-LGVRLRQHHESSLKVAEWLAEHP 277 (391)
T ss_dssp TTTCSSSCCCEEEEE-CTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHT-------T-HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hccccccccccceec-cccccccchhhhhcccccCCchhhhhhhccch-------h-HHHHHHHHHHHHHHHHHHHHhcc
Confidence 886333 33455665 77888888777777777888888777776665 2 33333445677788999999998
Q ss_pred CcccCCCCC
Q 018172 267 VFGLPEYPL 275 (360)
Q Consensus 267 ~~~~~~~~~ 275 (360)
.+..+.+++
T Consensus 278 ~V~~V~yPg 286 (391)
T d1cl1a_ 278 QVARVNHPA 286 (391)
T ss_dssp TEEEEECTT
T ss_pred ccccccccc
Confidence 777665554
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=3.5e-16 Score=141.72 Aligned_cols=282 Identities=13% Similarity=0.047 Sum_probs=192.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCC-CC-CcHHHHHHhCCeeeeec
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPY-YS-QYPAETDYLRSGLYKWD 115 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~-~~-~~~~~~~~~g~~~~~~~ 115 (360)
..+.|+.++++++. +.+.+++++|+|.++..++..++.+|++ +++.... |+ .+...++..|.++..++
T Consensus 35 ~~~~~~~l~~ll~~------~~~~i~~~gsgT~a~e~~~~nl~~~g~~----vlv~~~G~f~~~~~~~a~~~~~~~~~~~ 104 (348)
T d1iuga_ 35 FLKARGLLREAFRT------EGEVLILTGSGTLAMEALVKNLFAPGER----VLVPVYGKFSERFYEIALEAGLVVERLD 104 (348)
T ss_dssp HHHHHHHHHHHHTC------SSEEEEEESCHHHHHHHHHHHHCCTTCE----EEEEECSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhCC------CCCEEEEeCchHHHHHHHHHhccccccc----ceeecchHHHHHHHHHHHhcCccccccc
Confidence 36777888888774 4457888999999999999999999987 7776655 33 23456777888888776
Q ss_pred CCccc-c----ccCCCeeEEEEcCCCCCCcccch-HHHHHHhhhc--CcEEEEeecccCCCCCcCCCCCCccEEEecccc
Q 018172 116 GDANT-F----DKNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSA--EGKLIHDLAYYWPQYTPITGAADHDIMLFTLSK 187 (360)
Q Consensus 116 ~~~~~-~----~~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~--~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK 187 (360)
.+... + ..+.+++.+++++..+.||...+ +.+.++|+++ +.++++|.+.+.+..+...+..+.++++.|..|
T Consensus 105 ~~~g~~~~~~~~~~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK 184 (348)
T d1iuga_ 105 YPYGDTPRPEDVAKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQK 184 (348)
T ss_dssp CCTTCCCCTTTSCCSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSS
T ss_pred ccCCCccccccccccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccccccccCCEEEecccc
Confidence 54321 1 22568899999999899999988 6677777655 578889998876655555677788999999999
Q ss_pred cc-CCCCceEEEEeecCHHHHHHHH-------------HH-HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHH
Q 018172 188 CT-GHAGSRIGWALVKDTEVARKMT-------------RF-IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMS 252 (360)
Q Consensus 188 ~~-~~~G~r~G~~~~~~~~~~~~l~-------------~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 252 (360)
.+ |+|| +|+++. +++.++.+. .. ......+++.....++.++|+.+.. ..++..++.+
T Consensus 185 ~l~gppG--~~~v~~-s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~----~~~~~~~~~~ 257 (348)
T d1iuga_ 185 GLMCPPG--LGFVAL-SPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLP----RLEEHLALKA 257 (348)
T ss_dssp TTCCCSC--EEEEEE-CHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGG----GHHHHHHHHH
T ss_pred ceecCCc--eeeeee-chHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHH----HHhHHHHHHH
Confidence 88 8888 788888 677666431 11 1123445666677777777775432 2333333333
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEE
Q 018172 253 ERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVS 329 (360)
Q Consensus 253 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s 329 (360)
..++.+.+.+... ++...... .+.+ ...+.+|++ ..+.+.|+++||.+.+|..- .....+||+
T Consensus 258 ~~~~~~~~~~~~~-gl~~~~~~-----------~s~~-v~~~~~P~g~~~~~~~~~l~~~gi~i~~G~~~-l~~~~~RIg 323 (348)
T d1iuga_ 258 WQNALLYGVGEEG-GLRPVPKR-----------FSPA-VAAFYLPEGVPYARVKEAFAQRGAVIAGGQGP-LKGKVFRLS 323 (348)
T ss_dssp HHHHHHHHHHHHT-TCEESCSS-----------BCTT-CEEEECCTTCCHHHHHHHHHTTTEECEECCGG-GTTTEEEEC
T ss_pred HHHHHHhhhhhhh-hhccChhh-----------cCCe-EEEEECCCCCCHHHHHHHHHHCCeEEEcCccc-cCCCEEEEe
Confidence 3344444444444 44432111 0111 244555543 77888999999999988532 234689997
Q ss_pred ec-C-ChHHHHHHHHHHHHHHhc
Q 018172 330 ML-S-REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 330 ~~-~-~~e~~~~~~~~l~~~~~~ 350 (360)
.- . +.+++++++++|++++++
T Consensus 324 ~mG~~~~~d~~~~~~~l~~~l~~ 346 (348)
T d1iuga_ 324 LMGAYDRYEALGVAGMFREVLEE 346 (348)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 52 2 899999999999999875
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.73 E-value=7.8e-18 Score=150.06 Aligned_cols=283 Identities=11% Similarity=-0.007 Sum_probs=164.4
Q ss_pred ccccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH
Q 018172 25 SYLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET 104 (360)
Q Consensus 25 ~~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~ 104 (360)
..|++..+. +++|+.+++++|. ++++|++|+|+|+++..++..+.++++. +++..+.+..+....
T Consensus 29 ~~y~~~~~~-----~~lr~~ia~~~g~------~~~~v~~tsggtean~~a~~~~~~~~~~----~~~~~~~~~~~~~~~ 93 (340)
T d1svva_ 29 AGYGQDSHC-----AKAARLIGELLER------PDADVHFISGGTQTNLIACSLALRPWEA----VIATQLGHISTHETG 93 (340)
T ss_dssp CSTTCSHHH-----HHHHHHHHHHHTC------TTSEEEEESCHHHHHHHHHHHHCCTTEE----EEEETTSHHHHSSTT
T ss_pred CCCCCCHHH-----HHHHHHHHHHhCC------CcceEEEcCCHHHHHHHHHHHHhhhccc----cccccccceeeeecc
Confidence 345544444 8999999999996 5669999999999999999999999987 888888877665443
Q ss_pred HHh--CCeeeeecCCcccccc--------------CCCeeEEEEcCCCCCCcccchH---HHHHHhhhcCcEEEEeeccc
Q 018172 105 DYL--RSGLYKWDGDANTFDK--------------NNGAYIEVVNSPNNPDGTIREA---VLAKVNRSAEGKLIHDLAYY 165 (360)
Q Consensus 105 ~~~--g~~~~~~~~~~~~~~~--------------~~~~~~i~~~~p~NPtG~~~~~---~~~~~~~~~~~~li~D~ay~ 165 (360)
... +............... .+.+.+++++.++|+.+....+ .+...+.+++.+++.|+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~ 173 (340)
T d1svva_ 94 AIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARL 173 (340)
T ss_dssp HHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTH
T ss_pred cccccceeeeecccccccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccce
Confidence 333 3333332222111100 2344455666666655555443 23455666999999999987
Q ss_pred CCCCCcCC-------CCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCC
Q 018172 166 WPQYTPIT-------GAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSD 238 (360)
Q Consensus 166 ~~~~~~~~-------~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (360)
........ ......+...+..|.. .+.+.++... .................+.+..... +++++..+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~aa~~~~~~~ 249 (340)
T d1svva_ 174 ASALSSPVNDLTLADIARLTDMFYIGATKAG--GMFGEALIIL-NDALKPNARHLIKQRGALMAKGWLL-GIQFEVLMKD 249 (340)
T ss_dssp HHHHTSTTCCCCHHHHHHHCSEEEEECTTTT--CSSCEEEEEC-SGGGCTTHHHHHHHTTCCCTTTHHH-HHHHHHHTST
T ss_pred eeeecccccccccccccccceeeecCCcccc--cccccccccc-chhhhhhhhhhcccccCccchhhHH-HHHHHHHhhh
Confidence 32111110 1112334444555544 3444555555 4444444443333222222222221 1222222222
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeee-eCCC
Q 018172 239 DYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMA-RGGR 317 (360)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~-~pg~ 317 (360)
.......+....+++++.+.|+..+ +.+..|. .++++++.+++ + ..+.|.++++.. .+..
T Consensus 250 ---~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~p~-------------~~~~v~~~~~~-~-~~~~l~~~~~~~~~~~~ 310 (340)
T d1svva_ 250 ---NLFFELGAHSNKMAAILKAGLEACG-IRLAWPS-------------ASNQLFPILEN-T-MIAELNNDFDMYTVEPL 310 (340)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHTT-CCBSSCC-------------SSSEECBEEEH-H-HHHHHTTTEECEEEEEE
T ss_pred ---hHHHHHHHHHHHHHhhhHHHHhcCC-CeeecCC-------------CceEEEEeCCH-H-HHHHHHHhhhhhccccc
Confidence 4555567778888889999998874 4544443 34467777654 2 333344443332 1111
Q ss_pred CCCCCCCeEEEEecC--ChHHHHHHHHHHHHH
Q 018172 318 RFGADAKYARVSMLS--REEIFNIFLERLSAI 347 (360)
Q Consensus 318 ~f~~~~~~~R~s~~~--~~e~~~~~~~~l~~~ 347 (360)
. ...+++|||++. ++||+|+++++|+++
T Consensus 311 ~--~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 311 K--DGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp T--TTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred C--CCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 1 136789998754 999999999999874
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.73 E-value=3.7e-16 Score=139.63 Aligned_cols=248 Identities=13% Similarity=0.121 Sum_probs=170.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeeeec
Q 018172 40 ELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYKWD 115 (360)
Q Consensus 40 ~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~~~ 115 (360)
.|+++++++.+. + ..+++++++.|+..++..++++||+ |+++.+.|...... ++..|.++..++
T Consensus 2 aLE~~la~Leg~-------~-~a~~~sSGMaAi~~~l~~ll~~Gd~----iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d 69 (331)
T d1pffa_ 2 ALEGKIAKLEHA-------E-ACAATASGMGAIAASVWTFLKAGDH----LISDDCLYGCTHALFEHQLRKFGVEVDFID 69 (331)
T ss_dssp HHHHHHHHHHTC-------S-EEEEESSHHHHHHHHHHHHCCTTCE----EEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhCC-------C-eEEEECCHHHHHHHHHHHHhCCCCE----EEEeCCCchHHHHHHHHHHHhcCeEEEEec
Confidence 588999999883 3 5777788899999999999999999 99999999887666 445699998886
Q ss_pred CC-cccccc--CCCeeEEEEcCCCCCCcccch-HHHHH-HhhhcCcEEEEeecccCCC-CCcCCCCCCccEEEecccccc
Q 018172 116 GD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAK-VNRSAEGKLIHDLAYYWPQ-YTPITGAADHDIMLFTLSKCT 189 (360)
Q Consensus 116 ~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~-~~~~~~~~li~D~ay~~~~-~~~~~~~~~~~i~~~S~sK~~ 189 (360)
.. .+.+.. ++++++|++.+|+||+..+.+ +.+.+ +++++++++|+|+.+..+- ..+ -..+.++++.|.+|.+
T Consensus 70 ~~d~~~~~~~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~p--l~~GaDiVv~S~TKy~ 147 (331)
T d1pffa_ 70 MAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNP--LDLGVDIVVHSATKYI 147 (331)
T ss_dssp TTSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCG--GGGTCSEEEEETTTTT
T ss_pred ccchhhHhhhcccccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccc--cccCCCEEEecchhhc
Confidence 54 344443 678999999999999999988 43444 4666899999999987421 222 2456799999999988
Q ss_pred CC-CCceEEEEeecCHHHHHHHHH--HHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018172 190 GH-AGSRIGWALVKDTEVARKMTR--FIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSG 266 (360)
Q Consensus 190 ~~-~G~r~G~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (360)
+= ...-.|.+++ +.+....... .+...+...++.....+...++ -+....++..++...+.+.|++++
T Consensus 148 ~Gh~d~~~G~v~~-~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~--------Tl~~Rm~~~~~nA~~lA~~L~~hp 218 (331)
T d1pffa_ 148 NGHTDVVAGLVCS-RADIIAKVKSQGIKDITGAIISPHDAWLITRGTL--------TLDMRVKRAAENAQKVAEFLHEHK 218 (331)
T ss_dssp SSSSSCCCEEEEE-CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCccccccccc-cccchhhhhhhhhhhccCCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhhCC
Confidence 53 3344466666 6665555443 2333455677777777666554 334444555777788999999998
Q ss_pred CcccCCCCCcc----cccccccCCCCCCcccccCCchHHHHHHHHhhC
Q 018172 267 VFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKEDEDCEKLLRAER 310 (360)
Q Consensus 267 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 310 (360)
.+..+.+++.. +..........+..+.+.+++.+...+.+.+-.
T Consensus 219 ~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~~~~~~f~d~l~ 266 (331)
T d1pffa_ 219 AVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCH 266 (331)
T ss_dssp TCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCS
T ss_pred cEEeeccccccCccHHHHHhhcccccCcccceeeccHHHHHHHHHhCC
Confidence 77666555422 111111223345556777766555555444434
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=5.3e-16 Score=142.07 Aligned_cols=287 Identities=15% Similarity=0.083 Sum_probs=188.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHH----HhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETD----YLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~----~~g~~~~~ 113 (360)
...|+++++.+.+. + ..++++++..|+..++..++++||+ |+++...|.+....++ ..|.++..
T Consensus 60 ~~~LE~~la~LE~~-------~-~a~~~~SGmaAi~~~~~~l~~~gd~----il~~~~~Yg~t~~l~~~~~~~~gi~~~~ 127 (421)
T d2ctza1 60 VDVLEKRLAALEGG-------K-AALATASGHAAQFLALTTLAQAGDN----IVSTPNLYGGTFNQFKVTLKRLGIEVRF 127 (421)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESSHHHHHHHHHHHHCCTTCE----EEECSCCCHHHHHHHHTHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCC-------C-eEEEecChHHHHHHHHHhhcccccc----eeecCCcCCchhHHHHHHHhhcccccee
Confidence 37888888888873 3 5777777789999999999999999 9999999988877655 46888888
Q ss_pred ecCCcc--ccc--cCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccc
Q 018172 114 WDGDAN--TFD--KNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~~~~~--~~~--~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~ 188 (360)
++.+.. ... .+++|++|++.+|.|||..+.+ +.+.++|+++|+++|+|+.++...+..-+-..+.++++.|.+|.
T Consensus 128 ~d~~~~~~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKy 207 (421)
T d2ctza1 128 TSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKW 207 (421)
T ss_dssp CCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTT
T ss_pred cccccCcchhccccCCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccceeccccccCCcEEEEechhh
Confidence 764332 222 3688999999999999999999 78888999999999999998732222223467789999999998
Q ss_pred cCCCCceE-EEEeecCH------------------------------HHHHHH-HHHHhhccccCChHHHHHHHHHhccc
Q 018172 189 TGHAGSRI-GWALVKDT------------------------------EVARKM-TRFIELGSIGVSKESQLRAAKILGIV 236 (360)
Q Consensus 189 ~~~~G~r~-G~~~~~~~------------------------------~~~~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (360)
++--+--+ |.++..+. .++... .......+...++.....+...++
T Consensus 208 l~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~-- 285 (421)
T d2ctza1 208 VGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGME-- 285 (421)
T ss_dssp TTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHT--
T ss_pred ccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCc--
Confidence 86434444 45544211 111111 112222466788888887777666
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCccc----cccccc-CCCCCCcccccCCch-HHHHHHHHhhC
Q 018172 237 SDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYC----NFTGKF-TNSHPGFAWLESKED-EDCEKLLRAER 310 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~~~g 310 (360)
. +.-..++..++...+.+.|.+++.+..+.++|-.- ...... ....+.++.+.++++ +.+.+.+.+-.
T Consensus 286 -----T-L~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~~~~~a~~f~~~L~ 359 (421)
T d2ctza1 286 -----T-LSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLK 359 (421)
T ss_dssp -----T-HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCS
T ss_pred -----c-hhhHHHHHHHHHHHHHhhhccCCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHcCC
Confidence 2 23334445666778899999998775554443210 000111 123455778888765 44444444444
Q ss_pred eeeeCCCCCC--------------------------CCCCeEEEEecC-ChHHHHHHHHHHHHHH
Q 018172 311 IMARGGRRFG--------------------------ADAKYARVSMLS-REEIFNIFLERLSAIQ 348 (360)
Q Consensus 311 I~~~pg~~f~--------------------------~~~~~~R~s~~~-~~e~~~~~~~~l~~~~ 348 (360)
+ +..+..+| ..++.+|+|++. +.|| +++.|.+.+
T Consensus 360 l-~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~liRlSvGlEd~eD---Li~DL~qAL 420 (421)
T d2ctza1 360 L-ISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVED---LKAELKEAL 420 (421)
T ss_dssp S-SEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHH---HHHHHHHHT
T ss_pred c-CeeccccccccceeeCcccccchhCCHHHHHhcCCCcCeEEEEeccCCHHH---HHHHHHHhc
Confidence 4 22222222 235689999976 4444 455555543
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.72 E-value=1.4e-15 Score=138.67 Aligned_cols=252 Identities=14% Similarity=0.120 Sum_probs=172.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~ 113 (360)
...|++.++++.+. + ..++++++..|+..++..++++||+ |++++..|...... +...|.++..
T Consensus 61 ~~~le~~la~LEg~-------~-~a~~~sSGmaAi~~~~l~l~~~gd~----vv~~~~~yg~t~~~~~~~~~~~gi~~~~ 128 (394)
T d1e5ea_ 61 VSNLEGKIAFLEKT-------E-ACVATSSGMGAIAATVLTILKAGDH----LISDECLYGCTHALFEHALTKFGIQVDF 128 (394)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESSHHHHHHHHHHHHCCTTCE----EEEESCCCHHHHHHHHTHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCC-------c-ceeeeccchHHHHHHHHhhcccccc----cccccceeehhhHhHHHHhhccceeeec
Confidence 36788888888873 3 5677777899999999999999998 99999999877655 4446899888
Q ss_pred ecCC-cccccc--CCCeeEEEEcCCCCCCcccch-H-HHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccc
Q 018172 114 WDGD-ANTFDK--NNGAYIEVVNSPNNPDGTIRE-A-VLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~~~-~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~-~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~ 188 (360)
++.. .+.++. ++++++|++.+|.|||..+.+ + ....+++++++++|+|+.+..+- ..-+-..+.++++.|.+|.
T Consensus 129 ~d~~d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~-~~~Pl~~GaDiVvhS~TKy 207 (394)
T d1e5ea_ 129 INTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPM-ITNPVDFGVDVVVHSATKY 207 (394)
T ss_dssp ECTTSTTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTT-TCCGGGGTCSEEEEETTTT
T ss_pred cCCCCHHHHHHhhcccccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcc-cCCchhcCCCEEEechhhh
Confidence 8654 344443 688999999999999999988 4 44456666889999999987432 1122356779999999998
Q ss_pred cC-CCCceEEEEeecCHHHHHHHHHH--HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 018172 189 TG-HAGSRIGWALVKDTEVARKMTRF--IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS 265 (360)
Q Consensus 189 ~~-~~G~r~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (360)
++ ....-.|.+++ +.+.....+.. +...+...++.....+...++ . +.-..++..++...+.+.|+++
T Consensus 208 ~~GhsDv~~G~v~~-~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~-------T-L~lRm~r~~~nA~~lA~~L~~h 278 (394)
T d1e5ea_ 208 INGHTDVVAGLICG-KADLLQQIRMVGIKDITGSVISPHDAWLITRGLS-------T-LNIRMKAESENAMKVAEYLKSH 278 (394)
T ss_dssp TTCSSCCCCEEEEE-CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHT-------T-HHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCcccccccccc-hhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhch-------h-HHHHHHHHHHHHHHHHHHHhhc
Confidence 85 34444566666 77777665432 334566678888877777665 2 3344455577778899999999
Q ss_pred CCcccCCCCCcc----cccccccCCCCCCcccccCCch-HHHHHHHHhhCe
Q 018172 266 GVFGLPEYPLEY----CNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERI 311 (360)
Q Consensus 266 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI 311 (360)
+.+..+.++|.. +..........+..+.+.+.+. +...+.+.+-.+
T Consensus 279 p~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f~~~l~l 329 (394)
T d1e5ea_ 279 PAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKL 329 (394)
T ss_dssp TTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSS
T ss_pred CCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHHHHhCCc
Confidence 877655444321 1111111223344555666555 555555544444
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.72 E-value=2.3e-16 Score=147.53 Aligned_cols=266 Identities=10% Similarity=0.003 Sum_probs=172.1
Q ss_pred CCcEEEcCChHHHHHHHHHhhcC--CCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC---------Ccccccc----
Q 018172 59 GRHIVIGTGSTQLYQAALYALSS--PGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG---------DANTFDK---- 123 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~l~~--~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~---------~~~~~~~---- 123 (360)
.....+..|+++++.+++.++.. +++. |+++.-.|+++...+...|++++.++. |.+.++.
T Consensus 130 ~~~~~~~~~t~~~~~~~l~a~r~~~~~~~----vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~ 205 (434)
T d2z67a1 130 VHAIATPISTGMSISLCLSAARKKYGSNV----VIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKK 205 (434)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHHHCCCE----EEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHH
T ss_pred cceeecCcHHHHHHHHHHHHHHHhhcCce----EEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHh
Confidence 33555667777777777776642 4565 999999999999999999999887753 2222222
Q ss_pred ---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCC-----CCcCCCCCCccEEEeccccccCCCCc
Q 018172 124 ---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQ-----YTPITGAADHDIMLFTLSKCTGHAGS 194 (360)
Q Consensus 124 ---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~-----~~~~~~~~~~~i~~~S~sK~~~~~G~ 194 (360)
..++.+|+.++|++++|.+.+ +++.++|+++|+++++|++|+... .+......+.+++++|++|.++ .+.
T Consensus 206 ~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK~l~-~~~ 284 (434)
T d2z67a1 206 EIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLL-TPI 284 (434)
T ss_dssp HHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHC-CCS
T ss_pred hhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEEEcCccccc-cCC
Confidence 136778999999999999987 778889999999999999997422 1112245677899999999887 333
Q ss_pred eEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc---CCcccC
Q 018172 195 RIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS---GVFGLP 271 (360)
Q Consensus 195 r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~ 271 (360)
..|++...++.+++.+.+.......+.+.....++...+. . ..+++..++..++.+++.+.|+++ .+..+.
T Consensus 285 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~---~---~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll 358 (434)
T d2z67a1 285 GGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG---S---KNYLELVKNQKNSKKLLDELLNDLSKKTGGKFL 358 (434)
T ss_dssp SCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBC
T ss_pred CccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHH---H---hcchhHHHHHHHHHHHHHHHHHHhhhhcCceec
Confidence 4667776688888877655432222222222222222222 1 555666677777777777777665 233332
Q ss_pred CCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeee----CCCCC-----C-CCCCeEEEEecC--ChHHHHH
Q 018172 272 EYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMAR----GGRRF-----G-ADAKYARVSMLS--REEIFNI 339 (360)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~----pg~~f-----~-~~~~~~R~s~~~--~~e~~~~ 339 (360)
..+... ..++..+ .+...+...|.+.||... +...+ + ...+++|++++. ++||+++
T Consensus 359 ~~~~~~-----------~~~~~~~-~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~ 426 (434)
T d2z67a1 359 DVESPI-----------ASCISVN-SDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVN 426 (434)
T ss_dssp CCCCSS-----------EEEEECS-SCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHH
T ss_pred CCCCCc-----------eeeeecC-CCHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCHHHHHH
Confidence 221110 0112222 233667778889998532 11111 1 135789998865 9999999
Q ss_pred HHHHHHHH
Q 018172 340 FLERLSAI 347 (360)
Q Consensus 340 ~~~~l~~~ 347 (360)
++++|+++
T Consensus 427 ~i~~L~kI 434 (434)
T d2z67a1 427 SVSKLEKI 434 (434)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 99999863
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.71 E-value=1.2e-15 Score=136.80 Aligned_cols=274 Identities=13% Similarity=0.045 Sum_probs=167.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHH---HHHHhCCeeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPA---ETDYLRSGLYKW 114 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~---~~~~~g~~~~~~ 114 (360)
..++|+.+++++|. +.++++|+|+|+++..++..++..++. +++....+..... .....+..+..+
T Consensus 40 ~~~l~~~la~~~g~-------~~~v~f~~sGt~An~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (345)
T d1v72a1 40 TAQVKRKFCEIFER-------DVEVFLVPTGTAANALCLSAMTPPWGN----IYCHPASHINNDECGAPEFFSNGAKLMT 108 (345)
T ss_dssp HHHHHHHHHHHHTS-------CCEEEEESCHHHHHHHHHHTSCCTTEE----EEECTTSHHHHSSTTHHHHHTTSCEEEE
T ss_pred HHHHHHHHHHHHCC-------CcEEEECCchHHHHHHHHHHHHhcCCc----cccccccceeeechhhHHHhcCcccccc
Confidence 48999999999995 457999999999999999999988876 6666655444332 334446666655
Q ss_pred cCCccc------ccc--------CCCee-EEEEcCCCCCCcccch----HHHHHHhhhcCcEEEEeecccCC-------C
Q 018172 115 DGDANT------FDK--------NNGAY-IEVVNSPNNPDGTIRE----AVLAKVNRSAEGKLIHDLAYYWP-------Q 168 (360)
Q Consensus 115 ~~~~~~------~~~--------~~~~~-~i~~~~p~NPtG~~~~----~~~~~~~~~~~~~li~D~ay~~~-------~ 168 (360)
..+..+ +.. ...+. .++..+++|+.|...+ +.+..+|+++|++++.|+++... .
T Consensus 109 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 188 (345)
T d1v72a1 109 VDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS 188 (345)
T ss_dssp CCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC
T ss_pred cccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccC
Confidence 433221 111 11223 3445556667776644 34566788999999999998731 1
Q ss_pred CCcCCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHH
Q 018172 169 YTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGR 248 (360)
Q Consensus 169 ~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (360)
...............+..|..+ ...+.+ +.. .................+.+.....++.. .....+ ....+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~~-~~~~~~---~~~~~~~ 261 (345)
T d1v72a1 189 PAEMTWKAGVDALSFGATKNGV-LAAEAI-VLF-NTSLATEMSYRRKRAGHLSSKMRFLSAQI-DAYLTD---DLWLRNA 261 (345)
T ss_dssp TTTTTGGGTCCEEEECCGGGTC-SSCEEE-EES-SGGGHHHHHHHHHHTTCCCSSTHHHHHHH-HHHTST---THHHHHH
T ss_pred HHHhhccccccccccCcccccc-cccccc-ccc-hhhhhhhccccccccccccchhhHHhhhh-HHHHHH---hhhhhhc
Confidence 1111112233444555555433 222222 222 33333333332222333333333333332 222222 5556666
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCchHHHHHHHHhhCeeeeCCCCCCCCCCeEEE
Q 018172 249 RLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKEDEDCEKLLRAERIMARGGRRFGADAKYARV 328 (360)
Q Consensus 249 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~pg~~f~~~~~~~R~ 328 (360)
....++.+.+.+.+.+++++.+..|.+ ++++++++++ ...+.|+++||.+.++. . .++.+||
T Consensus 262 ~~~~~~~~~~~~~l~~~~g~~~~~p~~-------------~niv~~~~~~--~~~~~L~~~gi~v~~~~-~--~~~~lR~ 323 (345)
T d1v72a1 262 RKANAAAQRLAQGLEGLGGVEVLGGTE-------------ANILFCRLDS--AMIDALLKAGFGFYHDR-W--GPNVVRF 323 (345)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEEESCCC-------------SSEEEEEECH--HHHHHHHHTTCBCBCSS-S--STTEEEE
T ss_pred cchhhHHHHHHHHHHhcCCcEeccCCC-------------ccEEEEEcCH--HHHHHHHHcCCCccccC-C--CCCEEEE
Confidence 777777788888999998877665543 3467777753 45567778899876532 2 3679999
Q ss_pred EecC--ChHHHHHHHHHHHHH
Q 018172 329 SMLS--REEIFNIFLERLSAI 347 (360)
Q Consensus 329 s~~~--~~e~~~~~~~~l~~~ 347 (360)
+++. ++|++|+++++|++.
T Consensus 324 ~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 324 VTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp ECCTTCCHHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 9865 899999999999874
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.70 E-value=1.1e-15 Score=140.42 Aligned_cols=283 Identities=17% Similarity=0.150 Sum_probs=188.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
..++++.+++++|. . +++.++++|.|+.+++.++ +++||+ |++|..+|.....++...|++++.+++
T Consensus 36 v~~fE~~~a~~~g~-------~-~~v~~~SGt~Al~lal~~l~~~~gde----Vi~p~~t~~a~~~ai~~~g~~p~~~d~ 103 (384)
T d1b9ha_ 36 VNSFEREFAAHHGA-------A-HALAVTNGTHALELALQVMGVGPGTE----VIVPAFTFISSSQAAQRLGAVTVPVDV 103 (384)
T ss_dssp HHHHHHHHHHHTTC-------S-EEEEESCHHHHHHHHHHHTTCCTTCE----EEEESSSCTHHHHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHHCc-------C-eEEEeCCHHHHHHHHHHHcCCCCCCE----EEEeccccccccccccccccccccccc
Confidence 49999999999995 3 6888888999999999988 789998 999999999999999999999999887
Q ss_pred Ccccccc---------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC---cCCCCCCccEEEe
Q 018172 117 DANTFDK---------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT---PITGAADHDIMLF 183 (360)
Q Consensus 117 ~~~~~~~---------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~---~~~~~~~~~i~~~ 183 (360)
+.+.+.. ++++++|+ +.+..|...+ +.+..+|+++++.+|.|.+++.+... ......+-.++.+
T Consensus 104 ~~~~~~~d~~~~~~~i~~~tk~i~---~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf 180 (384)
T d1b9ha_ 104 DAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSF 180 (384)
T ss_dssp CTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEEC
T ss_pred cccccccchhhhcccccccccccc---cccccccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceecc
Confidence 7654433 46889987 4556777766 67778899899999999999753211 1111223334444
Q ss_pred ccccccCCCCceEEEEeecCHHHHHHHHHHHhhccc-------------cCC-hHHHHHHHHHhcccCCCchhHHHHHHH
Q 018172 184 TLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI-------------GVS-KESQLRAAKILGIVSDDYPNFFEYGRR 249 (360)
Q Consensus 184 S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~-------------~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (360)
+.+|.++ .| ..|.+++.++++.+.++..+..+.. +.+ .+.-..|+..+..+ +.+++..+
T Consensus 181 ~~~K~i~-~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL-----~~ld~~~~ 253 (384)
T d1b9ha_ 181 QNGKLMT-AG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQL-----ARLDEQIA 253 (384)
T ss_dssp CTTSSSC-SS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHH-----TTHHHHHH
T ss_pred ccccccc-cc-ccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhh-----hhcccchh
Confidence 5578876 44 3588888788888888776643210 111 11111222223322 34556666
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCC-CcccccccccCCCCCCcccccCC--ch---HHHHHHHHhhCeeeeCCCC-----
Q 018172 250 LMSERWNMLRQVIRQSGVFGLPEYP-LEYCNFTGKFTNSHPGFAWLESK--ED---EDCEKLLRAERIMARGGRR----- 318 (360)
Q Consensus 250 ~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~l~~~gI~~~pg~~----- 318 (360)
+-+++.+++.+.|+.++++...... .... ..-.+..+.++ .. +.+.+.|+++||.+++...
T Consensus 254 ~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~~y~plh~~ 325 (384)
T d1b9ha_ 254 VRDERWTLLSRLLGAIDGVVPQGGDVRADR--------NSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRT 325 (384)
T ss_dssp HHHHHHHHHHHHHHTSTTCEECCCCTTCCB--------CCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGS
T ss_pred hhhhhhhhhhhhhhcccccccccccccccc--------cccccccceecccccccHHHHHHHHHHCCCCeeeeCcchhcC
Confidence 6677788888889888765433221 1100 00011122222 22 5688899999999876421
Q ss_pred -----CCCC------------------CCeEEEEecC--C-hHHHHHHHHHHHHHHhc
Q 018172 319 -----FGAD------------------AKYARVSMLS--R-EEIFNIFLERLSAIQGG 350 (360)
Q Consensus 319 -----f~~~------------------~~~~R~s~~~--~-~e~~~~~~~~l~~~~~~ 350 (360)
++.. ...+.|.+.. + ++|++..++.|++++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 326 DAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 383 (384)
T ss_dssp HHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1110 1247777644 5 57999999999999875
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=1.2e-15 Score=139.03 Aligned_cols=287 Identities=14% Similarity=0.093 Sum_probs=186.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH----hCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY----LRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~----~g~~~~~ 113 (360)
...|+++++++.+. + ..++++++..++..+ ..++.+||+ |+++...|......++. .|.++..
T Consensus 57 ~~~lE~~la~LE~~-------~-~a~~~sSGmaAi~~~-l~~l~~gd~----iv~~~~~yg~t~~~~~~~l~~~gi~~~~ 123 (393)
T d1n8pa_ 57 RENLERAVAALENA-------Q-YGLAFSSGSATTATI-LQSLPQGSH----AVSIGDVYGGTHRYFTKVANAHGVETSF 123 (393)
T ss_dssp HHHHHHHHHHHTTC-------S-EEEEESCHHHHHHHH-HHTSCSSCE----EEEESSCCHHHHHHHHHTSTTTCSCCEE
T ss_pred HHHHHHHHHHHhCC-------c-eEEEecCchhHHHhh-hhcccCCCe----eeeeeeecccchhhhhhhhhcccceeEE
Confidence 47788888888773 4 455555557888655 466788998 99999999988877665 4777776
Q ss_pred ecCCcccccc--CCCeeEEEEcCCCCCCcccch-HHHHHHhh----hcCcEEEEeecccCC-CCCcCCCCCCccEEEecc
Q 018172 114 WDGDANTFDK--NNGAYIEVVNSPNNPDGTIRE-AVLAKVNR----SAEGKLIHDLAYYWP-QYTPITGAADHDIMLFTL 185 (360)
Q Consensus 114 ~~~~~~~~~~--~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~----~~~~~li~D~ay~~~-~~~~~~~~~~~~i~~~S~ 185 (360)
++.+.+.+.. ++++++|++.+|.||+..+.+ +.+.++++ ++|+++|+|+.+..+ ...| -..+.++++.|.
T Consensus 124 ~~~~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~P--l~~GADiVvhS~ 201 (393)
T d1n8pa_ 124 TNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNP--LNFGADIVVHSA 201 (393)
T ss_dssp ESSHHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCG--GGGTCSEEEEET
T ss_pred eecchHHHHHHhhhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccCCc--hhhCCCEEEEcc
Confidence 6654444543 689999999999999999988 55555554 689999999998742 1222 256789999999
Q ss_pred ccccC-CCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 018172 186 SKCTG-HAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQ 264 (360)
Q Consensus 186 sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (360)
+|.++ ....-.|.++..+.++.+.++..+...+...++.....+...++ . +.-..++..++...+.+.|..
T Consensus 202 TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~-------T-l~lR~~~~~~nA~~lA~~L~~ 273 (393)
T d1n8pa_ 202 TKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLK-------T-LHLRVRQAALSANKIAEFLAA 273 (393)
T ss_dssp TTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT-------T-HHHHHHHHHHHHHHHHHHHTS
T ss_pred ccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCc-------c-hhhHHHHHHHHHHHHHHHHHh
Confidence 99885 34456677776678888899888877778888888877777665 2 233334445666778888876
Q ss_pred c-CCcccCCCCCcc----cccccccC--CCCCCcccccCCch-HHHHHHHHhhCeeeeCCCCC-----------------
Q 018172 265 S-GVFGLPEYPLEY----CNFTGKFT--NSHPGFAWLESKED-EDCEKLLRAERIMARGGRRF----------------- 319 (360)
Q Consensus 265 ~-~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg~~f----------------- 319 (360)
+ +.+..+.+++.. +....... ...+..+.+.++.+ +.+.+.+..-.+. ..+..+
T Consensus 274 ~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~~f~~~l~l~-~~~~SlGg~~SLi~~p~~~~h~~ 352 (393)
T d1n8pa_ 274 DKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLF-TLAESLGGIESLLEVPAVMTHGG 352 (393)
T ss_dssp CTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSS-EECSCCCCSSCEEECTTTTTSCS
T ss_pred ccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCHHHHHHHHHhCCcc-eecccCCCcCceEeCchhhcccc
Confidence 5 434443333211 01000111 12345677777654 4444444443432 112111
Q ss_pred ---------CCCCCeEEEEecCChHHHHHHHHHHHHHHhc
Q 018172 320 ---------GADAKYARVSMLSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 320 ---------~~~~~~~R~s~~~~~e~~~~~~~~l~~~~~~ 350 (360)
|..++.+|||++. |+.+.+++.|.+.+++
T Consensus 353 ~~~~~r~~~gi~~~liRlSvGl--E~~~DLi~Dl~~AL~~ 390 (393)
T d1n8pa_ 353 IPKEAREASGVFDDLVRISVGI--EDTDDLLEDIKQALKQ 390 (393)
T ss_dssp SCTTTTTTTSCCTTEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHhcCCCcCEEEEEecc--CCHHHHHHHHHHHHHH
Confidence 2235689999976 2344555555555544
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=2.4e-15 Score=140.97 Aligned_cols=290 Identities=9% Similarity=-0.037 Sum_probs=173.3
Q ss_pred HHHHHHHHH-HhhcCCCCCCCCcEEEcCChHH-HHHHHHHhh---cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeee
Q 018172 40 ELAEAINNL-HHVVDNAVSDGRHIVIGTGSTQ-LYQAALYAL---SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKW 114 (360)
Q Consensus 40 ~lr~~la~~-~~~~~~~~~~~~~i~~t~G~t~-~l~~~~~~l---~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~ 114 (360)
.++..+.++ ....|.+.. ...++|+|+|+ ++.+++.++ ...++. |+++...|.++...+..+|++++.+
T Consensus 94 ~le~~~~~~~~~l~g~~~~--~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~----vi~~~~~H~s~~~a~~~~g~~~~~v 167 (445)
T d3bc8a1 94 KITNSLVLNVIKLAGVHSV--ASCFVVPMATGMSLTLCFLTLRHKRPKAKY----IIWPRIDQKSCFKSMVTAGFEPVVI 167 (445)
T ss_dssp HHHHHHHHHHHHHHTCTTC--CEEEEESSCHHHHHHHHHHHHHHHCTTCCE----EEEECCCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCcc--cCccccccchHHHHHHHHHHHHHhCCCCCE----EEEcCcccHHHHHHHHHcCCeeEEE
Confidence 455554443 223333222 34566666665 444444544 234455 9999999999999999999998877
Q ss_pred cC---------Ccccccc------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCC-----c-C
Q 018172 115 DG---------DANTFDK------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYT-----P-I 172 (360)
Q Consensus 115 ~~---------~~~~~~~------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~-----~-~ 172 (360)
+. |.+.++. ++++.+|++++|+|++|.+.+ +++.++|+++|+++++|+||+..... . .
T Consensus 168 ~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~ 247 (445)
T d3bc8a1 168 ENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQG 247 (445)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH
T ss_pred EeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhc
Confidence 52 2222211 346889999999999999988 78889999999999999999743211 1 1
Q ss_pred CCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHH
Q 018172 173 TGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMS 252 (360)
Q Consensus 173 ~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 252 (360)
....+.+++..|.+|.++. +...|+++..+..+.+.+.........+.+...+.+....+. .....+..+...
T Consensus 248 ~~~~~vd~~~~s~hK~~~~-p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~ 320 (445)
T d3bc8a1 248 ARVGRIDAFVQSLDKNFMV-PVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG------CSGYRKLLKERK 320 (445)
T ss_dssp HHHSCCCEEEEEHHHHHSC-CSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred cCcCCcceEEecCcccccc-CCCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHh------hhcchhhHHHHH
Confidence 1234567899999998773 334677777678888877655433322322233332222221 133445555555
Q ss_pred HHHHHHHHHHHhc----CCcccCCCCCcccccccccCCCCCCcccccC------CchHHHHHHHHhhCeeeeC----CC-
Q 018172 253 ERWNMLRQVIRQS----GVFGLPEYPLEYCNFTGKFTNSHPGFAWLES------KEDEDCEKLLRAERIMARG----GR- 317 (360)
Q Consensus 253 ~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gI~~~p----g~- 317 (360)
++.+++.+.|+++ +......+...... +..+.. .+...+...|.+.||.... +.
T Consensus 321 ~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~-----------~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~ 389 (445)
T d3bc8a1 321 EMFVYLSTQLKKLAEAHNERLLQTPHNPISL-----------AMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNV 389 (445)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBCCCTTCSSEE-----------EEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCE
T ss_pred HHHHHHHHHHHHHHhhcCceeecCCCCCcce-----------EEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccc
Confidence 5556666666543 22222211111100 111111 1115566677788874321 11
Q ss_pred ---------CCCC-----CCCeEEEEecC--ChHHHHHHHHHHHHHHhchhc
Q 018172 318 ---------RFGA-----DAKYARVSMLS--REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 318 ---------~f~~-----~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~~ 353 (360)
.|+. ...++|++++. ++||++.++++|.+++++.++
T Consensus 390 ~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk 441 (445)
T d3bc8a1 390 QTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 441 (445)
T ss_dssp EEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1111 23468998765 899999999999999998764
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.65 E-value=1.8e-14 Score=131.75 Aligned_cols=284 Identities=11% Similarity=-0.015 Sum_probs=188.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc-CCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS-SPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~-~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
..++++.+++++|. . ++++++++|.|+.+++.++- .+||. ..|++|.-+|.+...++...|++++.+++
T Consensus 33 v~~fE~~~~~~~g~-------k-~ai~~~Sgt~Al~~al~al~~~~~~~--~eVi~p~~t~~a~~~ai~~~G~~pv~vDi 102 (371)
T d2fnua1 33 SLLFEEALCEFLGV-------K-HALVFNSATSALLTLYRNFSEFSADR--NEIITTPISFVATANMLLESGYTPVFAGI 102 (371)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHSSCCCTTS--CEEEECSSSCTHHHHHHHHTTCEEEECCB
T ss_pred HHHHHHHHHHHHCc-------C-eEEEEecHHHHHHHHHHHhcccCCCC--CeeecccccccccceeeeccCcccccccc
Confidence 49999999999995 3 68888899999999999983 44442 12999999999999999999999999988
Q ss_pred Ccccccc--------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-CcCCCCCCccEEEecc-
Q 018172 117 DANTFDK--------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-TPITGAADHDIMLFTL- 185 (360)
Q Consensus 117 ~~~~~~~--------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-~~~~~~~~~~i~~~S~- 185 (360)
+.+.... ++++++|+..+ ..|...+ +.+.++|+++++++|+|.+++.+.. .........++.++||
T Consensus 103 ~~~~~~~~~~~~~~~~~~t~avi~vh---~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~ 179 (371)
T d2fnua1 103 KNDGNIDELALEKLINERTKAIVSVD---YAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFH 179 (371)
T ss_dssp CTTSSBCGGGSGGGCCTTEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECC
T ss_pred cccccccchhhhhhccchhhcccccc---ccccccccccccccccccchhhccchhhccCceeccccCCccccccccccc
Confidence 7654322 46899998654 6787766 6778889999999999999986432 1111122234445555
Q ss_pred -ccccCCCCceEEEEeecCHHHHHHHHHHHhhccc------------c-CChHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 018172 186 -SKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI------------G-VSKESQLRAAKILGIVSDDYPNFFEYGRRLM 251 (360)
Q Consensus 186 -sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~------------~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (360)
+|.++ +|- .|.+++.+.++.+.++..+..+.. + ...+.-..|+..+..+ +.+++..++-
T Consensus 180 ~~K~l~-~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL-----~~l~~~~~~R 252 (371)
T d2fnua1 180 AIKPIT-TAE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQL-----KKAPFLMQKR 252 (371)
T ss_dssp TTSSSC-CSS-CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHH-----TTHHHHHHHH
T ss_pred cccccc-ccc-ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhh-----hhccchhhhh
Confidence 79887 443 688888889999999887643311 1 1112222233333333 3345555555
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCc-ccccccccCCCCCCcccccCCc----h-HHHHHHHHhhCeeeeCCCCC------
Q 018172 252 SERWNMLRQVIRQSGVFGLPEYPLE-YCNFTGKFTNSHPGFAWLESKE----D-EDCEKLLRAERIMARGGRRF------ 319 (360)
Q Consensus 252 ~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~gI~~~pg~~f------ 319 (360)
+++.+++.+.|...+++....+... ..++ - ...+.+.+ . +.+.+.|+++||.+++....
T Consensus 253 ~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~--------~-~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~ 323 (371)
T d2fnua1 253 EEAALTYDRIFKDNPYFTPLHPLLKDKSSN--------H-LYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQL 323 (371)
T ss_dssp HHHHHHHHHHHTTCSSEEESGGGCSSCCCC--------S-CEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHH
T ss_pred hhhhhhhccccccccccccccccccccccc--------c-cccccccccchhHHHHHHHHHHHCCCCcceeCcccccCHH
Confidence 6666777788888776655433221 1110 0 11222222 1 66888999999998875321
Q ss_pred -----CCC---------CCeEEEEecC--ChHHHHHHHHHHHHHHhc
Q 018172 320 -----GAD---------AKYARVSMLS--REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 320 -----~~~---------~~~~R~s~~~--~~e~~~~~~~~l~~~~~~ 350 (360)
... ...+.+.+.. +.++++..++.|.++++.
T Consensus 324 ~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~ 370 (371)
T d2fnua1 324 YQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFES 370 (371)
T ss_dssp HHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 110 1246665544 899999999999988764
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.65 E-value=1.5e-14 Score=132.37 Aligned_cols=289 Identities=11% Similarity=0.030 Sum_probs=182.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecC
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDG 116 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 116 (360)
..++++.+++++|. . ..+.++++|.|+.+++.++ +++||+ |++|.-+|.....++...|++++.+++
T Consensus 23 ~~~fE~~~~~~~~~-------~-~~~~~~SgT~Al~lal~~l~~~~gde----Vi~p~~t~~a~~~~~~~~g~~pv~~Di 90 (374)
T d1o69a_ 23 VNRFEQSVKDYSKS-------E-NALALNSATAALHLALRVAGVKQDDI----VLASSFTFIASVAPICYLKAKPVFIDC 90 (374)
T ss_dssp HHHHHHHHHHHHCC-------S-EEEEESCHHHHHHHHHHHTTCCTTCE----EEEESSSCGGGTHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHHCc-------C-eEEEeCCHHHHHHHHHHHcCCCCcCE----EEeCCcchHhhHHHHhhccceeEeccc
Confidence 49999999999995 3 6888889999999999998 788998 999999999999999999999999988
Q ss_pred Cccccc-----------cCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCC-CcCCCCCCccEEEe
Q 018172 117 DANTFD-----------KNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQY-TPITGAADHDIMLF 183 (360)
Q Consensus 117 ~~~~~~-----------~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~-~~~~~~~~~~i~~~ 183 (360)
|.+... .++++++|++.+ ..|...+ +.+.++|+++++.||+|.|++.+.. ....-....++.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~aii~~~---~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~f 167 (374)
T d1o69a_ 91 DETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVY 167 (374)
T ss_dssp CTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEE
T ss_pred ccccccccccccccchhcccccccccccc---cccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEE
Confidence 744221 146789998654 5677766 6778889999999999999985421 11111112366666
Q ss_pred cc--ccccCCCCceEEEEeecCHHHHHHHHHHHhhccc----------cC-ChHHHHHHHHHhcccCCCchhHHHHHHHH
Q 018172 184 TL--SKCTGHAGSRIGWALVKDTEVARKMTRFIELGSI----------GV-SKESQLRAAKILGIVSDDYPNFFEYGRRL 250 (360)
Q Consensus 184 S~--sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~----------~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (360)
|| +|.++ +| ..|.+++.+.++++.+...+..... +. ..+.-..|+..+..+ ..+.+..++
T Consensus 168 Sf~~~K~l~-tg-eGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL-----~~l~~~i~~ 240 (374)
T d1o69a_ 168 SYNGNKIIT-TS-GGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQM-----EVLEQRVLK 240 (374)
T ss_dssp ECCTTSSSC-CS-SCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH-----TTHHHHHHH
T ss_pred eccCccccc-cc-cceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHH-----hhhhhhcch
Confidence 66 58876 44 3588888789999998877643211 11 112222222223322 233444444
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCcccccc--cccCCCCC----------Cccc--ccCCch-HHHHHHHHhhCeeeeC
Q 018172 251 MSERWNMLRQVIRQSGVFGLPEYPLEYCNFT--GKFTNSHP----------GFAW--LESKED-EDCEKLLRAERIMARG 315 (360)
Q Consensus 251 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~--~~~~~~-~~~~~~l~~~gI~~~p 315 (360)
-++..+++.+.|........ .+......++ ........ .... +..... ..+.+.|+++||.+++
T Consensus 241 r~~i~~~y~~~L~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~ 319 (374)
T d1o69a_ 241 KREIYEWYKEFLGEYFSFLD-ELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRP 319 (374)
T ss_dssp HHHHHHHHHHHHTTTEECCC-CCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBC
T ss_pred hHHHHHHHHhhccccccccc-cccCCCCChhheeeeeccccccccccccccccchhhccchhhHHHHHHHHHHCCCCEEE
Confidence 45556677777776532221 1211110000 00000000 0000 011112 6688999999999987
Q ss_pred CCCC-------CC-----C-------CCeEEEEecC--ChHHHHHHHHHHHHHHh
Q 018172 316 GRRF-------GA-----D-------AKYARVSMLS--REEIFNIFLERLSAIQG 349 (360)
Q Consensus 316 g~~f-------~~-----~-------~~~~R~s~~~--~~e~~~~~~~~l~~~~~ 349 (360)
.... .. . ...+.+.+.. +++|++..++.|.++++
T Consensus 320 ~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk 374 (374)
T d1o69a_ 320 LWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 374 (374)
T ss_dssp CCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred eCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHHHC
Confidence 5321 00 0 1236665544 89999999999998873
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.64 E-value=1.7e-14 Score=134.97 Aligned_cols=293 Identities=11% Similarity=0.034 Sum_probs=182.0
Q ss_pred ccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHHHH
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAETDY 106 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~~~ 106 (360)
|...... .+|++.+++++|. + .+++++++|.|+.+++.+++++||. |+... .+......+..
T Consensus 71 Y~~dpt~-----~~lE~~~a~l~G~-------e-~al~~~SGt~An~~a~~~l~~~Gd~----Vi~~~-~f~~~~~~i~~ 132 (456)
T d1c7ga_ 71 YAGSENF-----YHLEKTVKELFGF-------K-HIVPTHQGRGAENLLSQLAIKPGQY----VAGNM-YFTTTRFHQEK 132 (456)
T ss_dssp SSSCHHH-----HHHHHHHHHHHCC-------S-EEEEESSHHHHHHHHHHHHCCTTEE----EEESS-CCHHHHHHHHH
T ss_pred ccCCchH-----HHHHHHHHHHhCC-------C-eEEECCCHHHHHHHHHHHhcCCCCe----EecCc-chHHHHHHHHH
Confidence 6544444 8999999999994 4 6888999999999999999999996 66543 34444444555
Q ss_pred hCCeeeeecCC----------------cccccc------CCCeeEEEEcCCCCCCc-ccch----HHHHHHhhhcCcEEE
Q 018172 107 LRSGLYKWDGD----------------ANTFDK------NNGAYIEVVNSPNNPDG-TIRE----AVLAKVNRSAEGKLI 159 (360)
Q Consensus 107 ~g~~~~~~~~~----------------~~~~~~------~~~~~~i~~~~p~NPtG-~~~~----~~~~~~~~~~~~~li 159 (360)
.|+.++.+..+ .+.++. ...+.++++.+++|+.| ..++ +.+.++|+++|+.++
T Consensus 133 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~ 212 (456)
T d1c7ga_ 133 NGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIF 212 (456)
T ss_dssp TTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEE
T ss_pred cCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEE
Confidence 67776654322 111111 13566889999999865 4455 456789999999999
Q ss_pred EeecccCC----------CCCc--CCC-----CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhc-----
Q 018172 160 HDLAYYWP----------QYTP--ITG-----AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELG----- 217 (360)
Q Consensus 160 ~D~ay~~~----------~~~~--~~~-----~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~----- 217 (360)
.|+++..+ .+.. +.+ ....+++.+|++|.++.++ .|++++.++++.+.++......
T Consensus 213 ~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~--GG~i~~~~~~l~~~~r~~~~~~~g~~~ 290 (456)
T d1c7ga_ 213 YDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI--GGFLCMNDEEMFSAAKELVVVYEGMPS 290 (456)
T ss_dssp EECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS--CEEEEESCHHHHHHHHHHHHHHTCCTT
T ss_pred EEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccc--eeEEEcCCHHHHHHHHHhccccCCCcc
Confidence 99987521 1111 100 1234678889999988543 4888887888888876543211
Q ss_pred cccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC
Q 018172 218 SIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297 (360)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
..+.+.....+++..+....+ .++ .+...++.++|.+.|.+.+ +.+..|.+..+.+.+.. ......+
T Consensus 291 ~g~~~~~~~~a~a~~l~e~~~--~~~----l~~r~~~~~~L~e~L~~~g-~~vv~p~g~~~v~vda~------~~~~~i~ 357 (456)
T d1c7ga_ 291 YGGLAGRDMEAMAIGLREAMQ--YEY----IEHRVKQVRYLGDKLREAG-VPIVEPTGGHAVFLDAR------RFCPHLT 357 (456)
T ss_dssp TTTCCHHHHHHHHHHHHHHTC--HHH----HHHHHHHHHHHHHHHHHTT-CCBCSSCCSSEEEEEHH------HHCTTSC
T ss_pred cchhhHHHHHHHHHHHHHhcC--HHH----HHHHHHHHHHHHHHHHhcc-CCcccCCCCcceeEech------hhccCCC
Confidence 112333333343433442221 122 2233445578888888884 45555666554333211 0011111
Q ss_pred -----chHHHHHHHHhhCeeeeCCCCC--CC----------CCCeEEEEecC---ChHHHHHHHHHHHHHHhchh
Q 018172 298 -----EDEDCEKLLRAERIMARGGRRF--GA----------DAKYARVSMLS---REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 298 -----~~~~~~~~l~~~gI~~~pg~~f--~~----------~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~~ 352 (360)
....+..++.+.||...+...+ +. ....+||++.. +.|+||..+++|+++.++..
T Consensus 358 ~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~ 432 (456)
T d1c7ga_ 358 QDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGG
T ss_pred cccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhhh
Confidence 1256777788889976542111 10 13469999853 89999999999999997653
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=4.4e-14 Score=131.86 Aligned_cols=275 Identities=12% Similarity=-0.018 Sum_probs=180.6
Q ss_pred EEEcCChHHHHHHHHHhhc-----------CCCCCCCceEEEeCCCCCCcHHHHHHhCCeeeeecCCcccccc-------
Q 018172 62 IVIGTGSTQLYQAALYALS-----------SPGGPEPISVVSAAPYYSQYPAETDYLRSGLYKWDGDANTFDK------- 123 (360)
Q Consensus 62 i~~t~G~t~~l~~~~~~l~-----------~~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~------- 123 (360)
=.+|+|+|+++.+.+.+.. ..++. .++++...|.++..+++.+|++++.++.+.+....
T Consensus 118 G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~---~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~ 194 (450)
T d1pmma_ 118 GTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDK---PNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIE 194 (450)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSC---CEEEESSCCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHH
T ss_pred CeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCC---ceEEecccHHHHHHHHHHcCCCceEeeecCCCCcCcHHHHHH
Confidence 5899999999988776642 12222 38888889999999999999999999877643332
Q ss_pred --CCCeeEEEEcCCCCCCcccch-HHHH------HHhhhcCcEEEEeecccCCC-------CCcCCCCCCccEEEecccc
Q 018172 124 --NNGAYIEVVNSPNNPDGTIRE-AVLA------KVNRSAEGKLIHDLAYYWPQ-------YTPITGAADHDIMLFTLSK 187 (360)
Q Consensus 124 --~~~~~~i~~~~p~NPtG~~~~-~~~~------~~~~~~~~~li~D~ay~~~~-------~~~~~~~~~~~i~~~S~sK 187 (360)
+++|.+|+.+..++.||.+-+ +.+. ..++++|+++.+|.||+++. .....+....+.+..|.+|
T Consensus 195 ~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK 274 (450)
T d1pmma_ 195 ACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK 274 (450)
T ss_dssp HCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTT
T ss_pred HhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhh
Confidence 578999999999999999966 3222 34566999999999987532 2222344567889999999
Q ss_pred ccCCCCceEEEEeecCHHHHHHHHHHH------hh--ccc--cCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH
Q 018172 188 CTGHAGSRIGWALVKDTEVARKMTRFI------EL--GSI--GVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNM 257 (360)
Q Consensus 188 ~~~~~G~r~G~~~~~~~~~~~~l~~~~------~~--~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (360)
.++ ....+||++.+++.......... .. .+. +-+..........+..+ . ...+++..++..+..++
T Consensus 275 ~~~-~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~-G--~~G~~~~~~~~~~la~~ 350 (450)
T d1pmma_ 275 FGL-APLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL-G--REGYTKVQNASYQVAAY 350 (450)
T ss_dssp TTC-CCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHH
T ss_pred ccC-CCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhh-h--HHHHHHHHHHHHHHHHH
Confidence 654 55569999986655332211100 00 011 11222222233333322 1 27788888999999999
Q ss_pred HHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCc-------hHHHHHHHHhhCeeeeCCCCCCC---CCCeEE
Q 018172 258 LRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE-------DEDCEKLLRAERIMARGGRRFGA---DAKYAR 327 (360)
Q Consensus 258 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~gI~~~pg~~f~~---~~~~~R 327 (360)
+.+.|++.+.+++..+.... .....+.+++++ ..++.+.|+++|..+ |...+.. ....+|
T Consensus 351 l~~~L~~~~~~el~~~~~p~---------~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v-~~~~~p~~~~~~~~lR 420 (450)
T d1pmma_ 351 LADEIAKLGPYEFICTGRPD---------EGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQV-PAFTLGGEATDIVVMR 420 (450)
T ss_dssp HHHHHHTTSCEEEEEECCTT---------TBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBC-CEEECCTTCTTCEEEE
T ss_pred HHHHHHhCCCeEEEeCCCCC---------CceEEEEEecCCcccCCCCHHHHHHHHHHcCCee-eccCcCCCcCCcEEEE
Confidence 99999999877664321000 000112333321 157889999999665 3222211 245799
Q ss_pred EEecC--ChHHHHHHHHHHHHHHhchhc
Q 018172 328 VSMLS--REEIFNIFLERLSAIQGGSIS 353 (360)
Q Consensus 328 ~s~~~--~~e~~~~~~~~l~~~~~~~~~ 353 (360)
+++.. +++.++++++.|++++++..+
T Consensus 421 vvv~~~~t~e~~d~lv~dl~~~v~~l~~ 448 (450)
T d1pmma_ 421 IMCRRGFEMDFAELLLEDYKASLKYLSD 448 (450)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99855 889999999999999987643
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.56 E-value=3.3e-15 Score=140.79 Aligned_cols=298 Identities=10% Similarity=0.012 Sum_probs=173.0
Q ss_pred cccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCC---CceEEEeCCCCCCcHH
Q 018172 26 YLSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPE---PISVVSAAPYYSQYPA 102 (360)
Q Consensus 26 ~y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~---~~~vl~~~p~~~~~~~ 102 (360)
.|....++ .+|++.+++++|. +++++++++++++..++..++++|+.. ...++...+.|..+..
T Consensus 70 ~y~~~~~~-----~~le~~~a~l~g~--------~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~ 136 (465)
T d1ax4a_ 70 AYAGSRNY-----YDLKDKAKELFNY--------DYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAA 136 (465)
T ss_dssp CSSSCHHH-----HHHHHHHHHHHCC--------CEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHH
T ss_pred hhccChHH-----HHHHHHHHHHHCC--------CEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHH
Confidence 47666665 8999999999984 479999999999999999997544321 1125566555555556
Q ss_pred HHHHhCCeeeeecCC----------------cccccc------CCCeeEEEEcCCCCCCcc-cch----HHHHHHhhhcC
Q 018172 103 ETDYLRSGLYKWDGD----------------ANTFDK------NNGAYIEVVNSPNNPDGT-IRE----AVLAKVNRSAE 155 (360)
Q Consensus 103 ~~~~~g~~~~~~~~~----------------~~~~~~------~~~~~~i~~~~p~NPtG~-~~~----~~~~~~~~~~~ 155 (360)
.....|..++....+ .+.++. +..+.++++..++|..|. .++ +.+.++|+++|
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g 216 (465)
T d1ax4a_ 137 HVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 216 (465)
T ss_dssp HHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcC
Confidence 677778887755321 111111 124455666666665543 344 46678999999
Q ss_pred cEEEEeecccCCC-------CCcCCC----------CCCccEEEeccccccCCCCceEEEEeecCH-HHHHHHHHHH---
Q 018172 156 GKLIHDLAYYWPQ-------YTPITG----------AADHDIMLFTLSKCTGHAGSRIGWALVKDT-EVARKMTRFI--- 214 (360)
Q Consensus 156 ~~li~D~ay~~~~-------~~~~~~----------~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~-~~~~~l~~~~--- 214 (360)
+++++|+++..+. .....+ ..-.+++.+|.+|..+ +.+.|+++..+. .+........
T Consensus 217 ~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~ 294 (465)
T d1ax4a_ 217 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPL--LNIGGLVAIRDNEEIFTLARQRCVPM 294 (465)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTC--CSSCEEEEESSCHHHHHHHHHHHHHH
T ss_pred CEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcc--cccceeEeecchHHHHHhhhcccccc
Confidence 9999999986210 011101 0113456667777654 555788887432 3333332221
Q ss_pred -hhccc-cCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcc
Q 018172 215 -ELGSI-GVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFA 292 (360)
Q Consensus 215 -~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (360)
..... +.......++...+.. ...+...++..++.+++.+.|++++ ..+..+.+..+.+.+.. .+
T Consensus 295 ~~~~~~~~~~~~~~~a~~~~~~e------~~~~~~~~~~~~~~~~l~~~L~~~g-~~~v~~~~~~~~~~~~~------~~ 361 (465)
T d1ax4a_ 295 EGFVTYGGLAGRDMAAMVQGLEE------GTEEEYLHYRIGQVKYLGDRLREAG-IPIQYPTGGHAVFVDCK------KL 361 (465)
T ss_dssp TCSTTTTTCCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHHHTT-CCBCSSCCSSEEEEEST------TT
T ss_pred ccCCCcchhhHHHHHHHhhhhHH------hhhHHHHHHHHHHHHHHHHHHHhhc-CccccCCCcceeeeehh------hh
Confidence 11111 1222333333333331 1123344455566788899999884 44445555554432211 01
Q ss_pred cccCCc-----hHHHHHHHHhhCeeeeCCCC------------CCCCCCeEEEEecC---ChHHHHHHHHHHHHHHhch
Q 018172 293 WLESKE-----DEDCEKLLRAERIMARGGRR------------FGADAKYARVSMLS---REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 293 ~~~~~~-----~~~~~~~l~~~gI~~~pg~~------------f~~~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~~ 351 (360)
....+. ......++.+.||....... .....+.+||++-. ++|++|.++++|.+++++.
T Consensus 362 ~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~ 440 (465)
T d1ax4a_ 362 VPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 440 (465)
T ss_dssp CTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred cCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 111111 15677888889997653221 11124579998632 8999999999999998754
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=7.7e-12 Score=112.61 Aligned_cols=259 Identities=14% Similarity=0.112 Sum_probs=179.5
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH-----HHHhCCeeeeecCCcccc-cc--------CCCeeEE
Q 018172 65 GTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE-----TDYLRSGLYKWDGDANTF-DK--------NNGAYIE 130 (360)
Q Consensus 65 t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~-----~~~~g~~~~~~~~~~~~~-~~--------~~~~~~i 130 (360)
..+++.+...++.+|++|||+ |+..+..+.....- +....++.+.++.|.++. +- ..++|+|
T Consensus 94 p~SGs~AN~av~~All~pGD~----Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklI 169 (416)
T d1dfoa_ 94 PHSGSQANFAVYTALLEPGDT----VLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMI 169 (416)
T ss_dssp CSSHHHHHHHHHHHHCCTTCE----EEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCSEE
T ss_pred cccCccHHHHHHHHhcCCCCe----eeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhccceE
Confidence 356788989999999999998 99999888877553 223346666676664432 11 2588999
Q ss_pred EEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccC-----C-CCCcCCCCCCccEEEeccccccCCCCceEEEEeec-
Q 018172 131 VVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYW-----P-QYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVK- 202 (360)
Q Consensus 131 ~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~-----~-~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~- 202 (360)
++..-.+| ...+ +.++++|++.|.++++|.+|.. + ...|+. ..+++.+|++|+| +|=|.|.+.+.
T Consensus 170 i~G~S~y~--r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~---~aDvvt~tThKtl--rGPrggiI~~~~ 242 (416)
T d1dfoa_ 170 IGGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP---HAHVVTTTTHKTL--AGPRGGLILAKG 242 (416)
T ss_dssp EEECSSCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTT---TSSEEEEESSSTT--CCCSCEEEEESS
T ss_pred Eecccccc--cccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCccc---ccceeeeehhhcc--cCCCceEEEecc
Confidence 97754433 2233 6788899999999999999972 2 223332 2479999999998 46677988883
Q ss_pred -CHHHHHHHHHHHhhccccCChHHHHHHHH-HhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCccccc
Q 018172 203 -DTEVARKMTRFIELGSIGVSKESQLRAAK-ILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNF 280 (360)
Q Consensus 203 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 280 (360)
++++.+.+.+....+..+.+.+...++.+ ++..... .......+++.++.+.|.+.|.+.+ +.+.. |+
T Consensus 243 ~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~---~~fk~Y~~qvv~NA~~La~~L~~~G-~~iv~--gg---- 312 (416)
T d1dfoa_ 243 GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAME---PEFKTYQQQVAKNAKAMVEVFLERG-YKVVS--GG---- 312 (416)
T ss_dssp CCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHHHHHHHHTT-CEEGG--GS----
T ss_pred chHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHhCC-ccccc--CC----
Confidence 36888888777665555666555555544 5553322 6677888888999999999999985 44432 11
Q ss_pred ccccCCCCCCcccccCCc----hHHHHHHHHhhCeeee----CCCCCCC-CCCeEEEEecC------ChHHHHHHHHHHH
Q 018172 281 TGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMAR----GGRRFGA-DAKYARVSMLS------REEIFNIFLERLS 345 (360)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~----pg~~f~~-~~~~~R~s~~~------~~e~~~~~~~~l~ 345 (360)
...-.+++++.+ +..+.+.|.+.||.+. |+..-.+ .+..+||+... .++|+++..+.|.
T Consensus 313 ------TdnHlvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~ 386 (416)
T d1dfoa_ 313 ------TDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMC 386 (416)
T ss_dssp ------CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHH
T ss_pred ------CCCceeEEEecccCCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHH
Confidence 111145777743 2889999999999874 3321111 35689998622 7899999999999
Q ss_pred HHHhc
Q 018172 346 AIQGG 350 (360)
Q Consensus 346 ~~~~~ 350 (360)
+++..
T Consensus 387 ~~l~~ 391 (416)
T d1dfoa_ 387 DVLDS 391 (416)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 98864
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.53 E-value=5.5e-12 Score=113.05 Aligned_cols=258 Identities=14% Similarity=0.107 Sum_probs=181.3
Q ss_pred CChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH-----HHHhCCeeeeecCCccccccC----------CCeeEE
Q 018172 66 TGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE-----TDYLRSGLYKWDGDANTFDKN----------NGAYIE 130 (360)
Q Consensus 66 ~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~----------~~~~~i 130 (360)
.+++.+...++.+|++|||+ |+..++.......- .....++++.++.|.+....| .++|+|
T Consensus 92 ~SGs~An~av~~all~pGD~----im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklI 167 (405)
T d1kl1a_ 92 HSGAQANMAVYFTVLEHGDT----VLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLI 167 (405)
T ss_dssp SSHHHHHHHHHHHHCCTTCE----EEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEE
T ss_pred cCchHHHHHHHHHhcCCCCE----EEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhCcceE
Confidence 45688889999999999998 99988777765533 333467777777776554432 588999
Q ss_pred EEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccC-----C-CCCcCCCCCCccEEEeccccccCCCCceEEEEeecCH
Q 018172 131 VVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYW-----P-QYTPITGAADHDIMLFTLSKCTGHAGSRIGWALVKDT 204 (360)
Q Consensus 131 ~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~-----~-~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~ 204 (360)
++..-.+|.=.-+ +.++++|++-|.+++.|.+|.. + ...|+ ...+++.+|.+|+| +|=|.|.|.+ +.
T Consensus 168 i~G~S~y~r~~d~-~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~---~~aDvvt~tThKtl--rGPrgg~I~~-~~ 240 (405)
T d1kl1a_ 168 VAAASAYPRIIDF-AKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV---PYAHFVTTTTHKTL--RGPRGGMILC-QE 240 (405)
T ss_dssp EECCSSCCSCCCH-HHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST---TTCSEEEEESSSTT--CCCSCEEEEE-CH
T ss_pred EecccccccccCh-HHHHHHHhhhCCEEecchhhHhhhhhhhhcCChh---hhhhheeccccccc--cCCCCceEEe-cc
Confidence 9876655433222 6778889999999999999972 2 22333 33588899999997 4667799988 88
Q ss_pred HHHHHHHHHHhhccccCChHHHHHHHH-HhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccc
Q 018172 205 EVARKMTRFIELGSIGVSKESQLRAAK-ILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGK 283 (360)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 283 (360)
++.+.+.+....+..+.+.+...++.+ +|..... .......+++..+.+.|.+.|.+.+ +.+.. |+
T Consensus 241 ~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~---~~fk~Ya~qvv~NAkaLa~~L~~~G-~~vv~--gg------- 307 (405)
T d1kl1a_ 241 QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQ---DDFKAYAKRVVDNAKRLASALQNEG-FTLVS--GG------- 307 (405)
T ss_dssp HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHHHHTT-CEEGG--GS-------
T ss_pred hhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHHhcCC-ceeec--CC-------
Confidence 999998877766666665555555544 4443221 5667888888999999999999885 44331 11
Q ss_pred cCCCCCCcccccCCc----hHHHHHHHHhhCeeee----CCCCCCC-CCCeEEEEec------CChHHHHHHHHHHHHHH
Q 018172 284 FTNSHPGFAWLESKE----DEDCEKLLRAERIMAR----GGRRFGA-DAKYARVSML------SREEIFNIFLERLSAIQ 348 (360)
Q Consensus 284 ~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~----pg~~f~~-~~~~~R~s~~------~~~e~~~~~~~~l~~~~ 348 (360)
...-.+++++.. +..+.++|.+.||.+. |+..-.+ .+..+||+.. ..+++++++.+.|.+++
T Consensus 308 ---Td~H~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l 384 (405)
T d1kl1a_ 308 ---TDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVL 384 (405)
T ss_dssp ---CSSSEEEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ---CccceeeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 111146777743 2778889999999875 4321111 3468999862 27899999999999998
Q ss_pred hc
Q 018172 349 GG 350 (360)
Q Consensus 349 ~~ 350 (360)
..
T Consensus 385 ~~ 386 (405)
T d1kl1a_ 385 KN 386 (405)
T ss_dssp TC
T ss_pred hc
Confidence 64
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=2.3e-13 Score=126.35 Aligned_cols=269 Identities=12% Similarity=0.012 Sum_probs=174.9
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHh-CCee-------------eeecCCcccc---
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYL-RSGL-------------YKWDGDANTF--- 121 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~~-------------~~~~~~~~~~--- 121 (360)
+.+.++++++++...+++.... .+.. +++.-+.+|......+... |... ...+.+....
T Consensus 102 ~~v~f~~sGseA~e~Alk~ar~~t~r~---~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (425)
T d1sffa_ 102 KKTLLVTTGSEAVENAVKIARAATKRS---GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGIS 178 (425)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTCC---EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBC
T ss_pred ceeeeeccccchhhhHHHHhhhhhccc---ceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCcccccccc
Confidence 5789999999999998887632 1222 3888888787776554443 2211 0111110000
Q ss_pred --------------cc-CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccC-CCCCcCC--CCCCc
Q 018172 122 --------------DK-NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYW-PQYTPIT--GAADH 178 (360)
Q Consensus 122 --------------~~-~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~-~~~~~~~--~~~~~ 178 (360)
.. ..+..++++.--....|...+ +.+.++|+++|+++|.||++.+ +...... ...+-
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv 258 (425)
T d1sffa_ 179 EDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGV 258 (425)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTS
T ss_pred chhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCC
Confidence 00 124455665444445676644 4677899999999999999985 2222211 11111
Q ss_pred cEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 018172 179 DIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNML 258 (360)
Q Consensus 179 ~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 258 (360)
.-=+.+++|.++ .|+.+|.+++ .+++++.+.......+++.|+++..++.+.|+.+.+. ...++..+.-...++.+
T Consensus 259 ~PDi~~~gK~l~-gG~P~~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~--~~~~~~~~~g~~l~~~l 334 (425)
T d1sffa_ 259 APDLTTFAKSIA-GGFPLAGVTG-RAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQE--NLLQKANDLGQKLKDGL 334 (425)
T ss_dssp CCSEEEECGGGG-TSSCCEEEEE-EHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHH
T ss_pred CccceecccccC-CCcceEEEEE-cHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHh--hhhhhhhhhhhhhhhhh
Confidence 112555889998 7899999998 7998888876666678899999999999999977654 66666666666666667
Q ss_pred HHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC--------Cch---HHHHHHHHhhCeeeeCCCCCCCCCCeEE
Q 018172 259 RQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES--------KED---EDCEKLLRAERIMARGGRRFGADAKYAR 327 (360)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R 327 (360)
.+.+++++.+.-..-.|.+ ..+.+ ++. ..+.+.+.++||.+.++... .+.+|
T Consensus 335 ~~~~~~~~~v~~vrg~Gl~--------------~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~---~n~i~ 397 (425)
T d1sffa_ 335 LAIAEKHPEIGDVRGLGAM--------------IAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPY---YNVLR 397 (425)
T ss_dssp HHHHHTCTTEEEEEEETTE--------------EEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTT---SCEEE
T ss_pred hhhHhhCCceEEEEccccE--------------EEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCC---CCEEE
Confidence 7777777643332222332 22222 122 55677788999999875322 45789
Q ss_pred EEe--cCChHHHHHHHHHHHHHHhchh
Q 018172 328 VSM--LSREEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 328 ~s~--~~~~e~~~~~~~~l~~~~~~~~ 352 (360)
|+. ..++++++++++++++++++.+
T Consensus 398 ~~PpL~it~~eid~~l~~l~~al~eik 424 (425)
T d1sffa_ 398 ILVPLTIEDAQIRQGLEIISQCFDEAK 424 (425)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 975 4499999999999999987653
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.47 E-value=1.3e-12 Score=120.33 Aligned_cols=266 Identities=11% Similarity=0.070 Sum_probs=165.3
Q ss_pred CcEEEcCChHHHHHHHHHhhcC------CCCCCCceEEEeCCCCCCcHHHHHHh-CCe------------eeeecCCc-c
Q 018172 60 RHIVIGTGSTQLYQAALYALSS------PGGPEPISVVSAAPYYSQYPAETDYL-RSG------------LYKWDGDA-N 119 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~------~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~~-~ 119 (360)
+.+.++.+++++....+..... .+.....+++.....|.......... +.. +..++.+. +
T Consensus 97 ~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (404)
T d1z7da1 97 DKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLE 176 (404)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHH
T ss_pred ceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHH
Confidence 4788899999999988776521 11111123666666666554333222 111 11122221 1
Q ss_pred cccc---CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcCC--C--CCCccEEEeccc
Q 018172 120 TFDK---NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPIT--G--AADHDIMLFTLS 186 (360)
Q Consensus 120 ~~~~---~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~~--~--~~~~~i~~~S~s 186 (360)
.+.. +++.-+|++..-....|...+ +.+.++|+++|+++|.||++.+. ...... . ....+++ +++
T Consensus 177 ~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDiv--t~g 254 (404)
T d1z7da1 177 ALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLG 254 (404)
T ss_dssp HHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EEC
T ss_pred HHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEE--EEc
Confidence 1111 345556666544556787755 57788999999999999999742 211111 1 1122333 788
Q ss_pred cccCCCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 018172 187 KCTGHAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS 265 (360)
Q Consensus 187 K~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (360)
|.++ .| ..+|.+++ ..++.+.+.......+++.|+++..++.+.|+.+.+. ...++..+.-...++.+.+.++++
T Consensus 255 K~l~-gG~~p~~~v~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ 330 (404)
T d1z7da1 255 KALS-GGHYPISAVLA-NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINE--KLCENAEKLGGPFLENLKRELKDS 330 (404)
T ss_dssp GGGG-TTSSCCEEEEE-CHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccc-CCCCCcccccc-hHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcc--hhhhhhccchhHHHHHHHHHHhcC
Confidence 9998 45 78899998 8999888877666677889999999999988865554 666666666666666677777776
Q ss_pred CCcccCCCCCcccccccccCCCCCCcccccCCch----HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHH
Q 018172 266 GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED----EDCEKLLRAERIMARGGRRFGADAKYARVSM--LSREEIFNI 339 (360)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~ 339 (360)
+.+.-.. +.+.+..+.+.+. ..+...|.++||.+.|.. .+.+||+. ..+++++++
T Consensus 331 ~~v~~vr--------------g~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~~-----~~~ir~~Ppl~it~~~id~ 391 (404)
T d1z7da1 331 KIVRDVR--------------GKGLLCAIEFKNELVNVLDICLKLKENGLITRDVH-----DKTIRLTPPLCITKEQLDE 391 (404)
T ss_dssp TTEEEEE--------------EETTEEEEEECTTTCCHHHHHHHHHHTTEECCEET-----TTEEEECCCTTCCHHHHHH
T ss_pred CCeEEEE--------------eeCcEEEEEEcCCcccHHHHHHHHHhCCeEEecCC-----CCEEEEECCcCCCHHHHHH
Confidence 5433222 2233444454432 557777889999987632 45789964 459999999
Q ss_pred HHHHHHHHHhc
Q 018172 340 FLERLSAIQGG 350 (360)
Q Consensus 340 ~~~~l~~~~~~ 350 (360)
++++|.+.+++
T Consensus 392 ~~~~l~~alk~ 402 (404)
T d1z7da1 392 CTEIIVKTVKF 402 (404)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999865
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.45 E-value=1.4e-12 Score=120.97 Aligned_cols=277 Identities=13% Similarity=0.066 Sum_probs=160.4
Q ss_pred CCcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHH--------hCC------------eeeeecC-
Q 018172 59 GRHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDY--------LRS------------GLYKWDG- 116 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~--------~g~------------~~~~~~~- 116 (360)
.+.+.+++++++|+..+++.... .|.. +|+.-..+|......+-. .+. +....+.
T Consensus 108 ~~~v~f~~sGseA~e~Alk~ar~~t~r~---~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 184 (427)
T d2gsaa_ 108 IEMVRFVNSGTEACMAVLRLMRAYTGRD---KIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN 184 (427)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHCCC---EEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTT
T ss_pred cccccccCCcHHHHHHHHHHHHHhcCCC---eEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcc
Confidence 35789999999999999887642 1322 388777777765432211 111 1111211
Q ss_pred Cccccc----cC-CCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCCCCCcCC--CC--CCccEEE
Q 018172 117 DANTFD----KN-NGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWPQYTPIT--GA--ADHDIML 182 (360)
Q Consensus 117 ~~~~~~----~~-~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~~~~~~~--~~--~~~~i~~ 182 (360)
+.+.++ .. .+..+|++.--..-.|.+.+ +.+.++|+++|+++|.||++.+....... .. -..++
T Consensus 185 ~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi-- 262 (427)
T d2gsaa_ 185 DLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFGVTPDL-- 262 (427)
T ss_dssp CHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTTCCCSE--
T ss_pred hHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhcCCCHHH--
Confidence 111111 11 34555666433344677654 46778999999999999999753221111 11 12233
Q ss_pred eccccccCCCCceEEEEeecCHHHHHHHHHH---HhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHH
Q 018172 183 FTLSKCTGHAGSRIGWALVKDTEVARKMTRF---IELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLR 259 (360)
Q Consensus 183 ~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (360)
.+++|.+| .|+.+|.+++ .+++++.+... ....+++.|+++..++.+.|+.+.+. ...++.++.-...++.+.
T Consensus 263 ~~~gK~lg-gG~p~~a~~~-~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~--~l~~~~~~~g~~l~~~L~ 338 (427)
T d2gsaa_ 263 TTLGKIIG-GGLPVGAYGG-KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQP--GTYEYLDQITKRLSDGLL 338 (427)
T ss_dssp EEECGGGG-TTSCCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTST--THHHHHHHHHHHHHHHHH
T ss_pred HhhhhccC-CCcceeeeee-hHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhh--hHHhhhhHHHHHHHHHHH
Confidence 45568888 7888999888 88888877542 22356789999999999999987664 455555555555555555
Q ss_pred HHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecCChHH
Q 018172 260 QVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSMLSREEI 336 (360)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~~~e~ 336 (360)
+...+++......-.+++..+.-.. ....++-.....+. ..+...|.++||++.|+. +. .+-++++.++++
T Consensus 339 ~l~~~~~~~~~v~~~ggm~~i~~~~-~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~-~~----~~~~~l~~Te~d 412 (427)
T d2gsaa_ 339 AIAQETGHAACGGQVSGMFGFFFTE-GPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ-FE----AGFTSLAHTEED 412 (427)
T ss_dssp HHHHHTTCCCEEEEETTEEEEESSS-CCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-TS----CEECCTTCCHHH
T ss_pred HHHhhcCCCcEEcccCCeEEEEEec-cCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCC-Cc----ceeCCCCCCHHH
Confidence 5555554222221112221110000 00000000111111 345566778999998853 21 122566669999
Q ss_pred HHHHHHHHHHHHhc
Q 018172 337 FNIFLERLSAIQGG 350 (360)
Q Consensus 337 ~~~~~~~l~~~~~~ 350 (360)
++++++++++++.+
T Consensus 413 Id~~l~al~~al~~ 426 (427)
T d2gsaa_ 413 IDATLAAARTVMSA 426 (427)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999865
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.2e-12 Score=118.58 Aligned_cols=264 Identities=11% Similarity=0.014 Sum_probs=165.4
Q ss_pred CcEEEcCChHHHHHHHHHhhcC------CCCCCCceEEEeCCCCCCcHHHHHHhCCe-------------eeeecCC-cc
Q 018172 60 RHIVIGTGSTQLYQAALYALSS------PGGPEPISVVSAAPYYSQYPAETDYLRSG-------------LYKWDGD-AN 119 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~------~gd~~~~~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~-~~ 119 (360)
+.+.++++++++...+++.... .....+.+++...-.|............. +..++.+ .+
T Consensus 99 ~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~ 178 (404)
T d2byla1 99 HKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLP 178 (404)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTTCHH
T ss_pred cccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecccCHH
Confidence 5799999999999999887631 11111123666666665443332222111 1122211 11
Q ss_pred cccc---CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcCCC----CCCccEEEeccc
Q 018172 120 TFDK---NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPITG----AADHDIMLFTLS 186 (360)
Q Consensus 120 ~~~~---~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~~~----~~~~~i~~~S~s 186 (360)
.++. +++.-+|++.--....|...+ +.+.++|+++|+++|.||++.+. ....... ....+++ +++
T Consensus 179 ~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~--~~g 256 (404)
T d2byla1 179 ALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLG 256 (404)
T ss_dssp HHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EEC
T ss_pred HHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCCEE--EEC
Confidence 2211 345566666443555676654 56788999999999999999842 2222111 1112433 788
Q ss_pred cccCCCC-ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 018172 187 KCTGHAG-SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQS 265 (360)
Q Consensus 187 K~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (360)
|.++ .| +.+|.+++ ++++.+.+.......+++.|+++..++.+.|+.+.+. +..+..+++-+++.+.|.++
T Consensus 257 K~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~------~l~~~~~~~g~~l~~~l~~l 328 (404)
T d2byla1 257 KALS-GGLYPVSAVLC-DDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEE------NLAENADKLGIILRNELMKL 328 (404)
T ss_dssp GGGG-TTSSCCEEEEE-CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHT------THHHHHHHHHHHHHHHHHTS
T ss_pred chhh-CCCccceeeee-chhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhc------CchhhhhHhhHHHHHHHHhh
Confidence 9998 66 78999998 8999888876666678889999999999999866542 34445555566777777766
Q ss_pred CCcccCCCCCcccccccccCCCCCCcccccCCc--h---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHH
Q 018172 266 GVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE--D---EDCEKLLRAERIMARGGRRFGADAKYARVSM--LSREEIFN 338 (360)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~ 338 (360)
..-.+.. +++.+.+..+.+.+ . ..+...+.++||.+.|.. .+.+||+. ..++++++
T Consensus 329 ~~~~i~~------------vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~~-----~~~i~l~PpL~it~~~id 391 (404)
T d2byla1 329 PSDVVTA------------VRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTH-----GDIIRFAPPLVIKEDELR 391 (404)
T ss_dssp CTTTEEE------------EEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECEEEE-----TTEEEECCCTTCCHHHHH
T ss_pred cccccee------------eeecccEEEEEEecCCchhHHHHHHHHHhCCeEEecCC-----CCEEEEECCcCCCHHHHH
Confidence 3211111 11233333333322 1 456777889999998731 45789974 34999999
Q ss_pred HHHHHHHHHHhc
Q 018172 339 IFLERLSAIQGG 350 (360)
Q Consensus 339 ~~~~~l~~~~~~ 350 (360)
+++++|++.+.+
T Consensus 392 ~~~~~l~~al~~ 403 (404)
T d2byla1 392 ESIEIINKTILS 403 (404)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 999999999875
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.44 E-value=5.9e-13 Score=120.87 Aligned_cols=282 Identities=11% Similarity=0.031 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH-HHHHHhhcCCCCCCCceEEEeC-CCCC-CcHHHHHHhCCeeeeec
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLY-QAALYALSSPGGPEPISVVSAA-PYYS-QYPAETDYLRSGLYKWD 115 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l-~~~~~~l~~~gd~~~~~vl~~~-p~~~-~~~~~~~~~g~~~~~~~ 115 (360)
++.|+.++++++.. ++.+|++++|++.+. ..+...+..+++. +++.. ..|. .+..+++..|..+..+.
T Consensus 51 ~~~r~~l~~l~~~~-----~~~~i~~~~gs~t~~~ea~~~~l~~~~~~----~l~~~~g~~~~~~~~~~~~~g~~~~~~~ 121 (361)
T d2c0ra1 51 NEAQARLLALLGNP-----TGYKVLFIQGGASTQFAMIPMNFLKEGQT----ANYVMTGSWASKALKEAKLIGDTHVAAS 121 (361)
T ss_dssp HHHHHHHHHHTTCC-----SSEEEEEESSHHHHHHHHHHHHHCCTTCE----EEEEECSHHHHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHHHHHHhCCC-----CCCEEEEECCCchHHHHHHHhccccCCCc----eEEEeechhhhhhhhhhhhcCceeeeec
Confidence 77888898888851 233688877776555 4556667777775 55443 2222 23455777798888766
Q ss_pred CCccc------cccC-CCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEecccc
Q 018172 116 GDANT------FDKN-NGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSK 187 (360)
Q Consensus 116 ~~~~~------~~~~-~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK 187 (360)
.+... ++.. ...+... .+|.||...+ +.+..+|+++|+++++|.+.+.++.+...... ++.+.|.+|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~---v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~~~~--di~~~s~~k 196 (361)
T d2c0ra1 122 SEASNYMTLPKLQEIQLQDNAAY---LHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLNQF--GLVYAGAQK 196 (361)
T ss_dssp CGGGTTCSCCCGGGCCCCTTEEE---EEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCGGGC--SEEEEETTT
T ss_pred cccccccchhhhhhhcccCcceE---EEEecccceecceEEEeeccCCceEEEEeeccccccccccccc--eeEEEeccc
Confidence 44322 2221 1122222 3467888877 44556788899999999999877665544443 566678899
Q ss_pred ccCCCCceEEEEeecCHHHH------------HHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 018172 188 CTGHAGSRIGWALVKDTEVA------------RKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERW 255 (360)
Q Consensus 188 ~~~~~G~r~G~~~~~~~~~~------------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (360)
.++++|.-.+++. ...+. ........ .....+......+.......... ........+.++++
T Consensus 197 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 271 (361)
T d2c0ra1 197 NLGPSGVTVVIVR--EDLVAESPKHLPTMLRYDTYVKNNS-LYNTPPSFGIYMVNEVLKWIEER--GGLEGVQQANRKKA 271 (361)
T ss_dssp TTCCSSCEEEEEE--GGGSSSCCTTSCGGGCHHHHHHTTT-CSSCCCHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHH
T ss_pred ccccccCcEEEEE--hHHhhhCcccccccccccccccccc-ccccccceeeehhhhHHHhhhhc--cchHHHHHHHHHHH
Confidence 9987774333332 22111 11111111 11122222222222212111111 44445555555555
Q ss_pred HHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC
Q 018172 256 NMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSMLS 332 (360)
Q Consensus 256 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~ 332 (360)
..+.................. .++.+ -+.+.++++ +.+.+.|+++||.++.|+.. -+.+|+|+-.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~--------~rS~~-~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~~---~g~~RIs~~~ 339 (361)
T d2c0ra1 272 SLIYDAIDQSGGFYRGCVDVD--------SRSDM-NITFRLASEELEKEFVKASEQEGFVGLKGHRS---VGGLRASIYN 339 (361)
T ss_dssp HHHHHHHHTSTTSSEESSCGG--------GBCSS-EEEEECSCHHHHHHHHHHHHHTTEESCBCCTT---TCSEEEECCT
T ss_pred HHhhhhhhhcccccccCCChh--------hccce-EEEEECCCcccHHHHHHHHHHCCCEEecCCCc---CCeEEEEecC
Confidence 666665555432222111111 11222 244555554 77889999999999998522 2349999855
Q ss_pred --ChHHHHHHHHHHHHHHhch
Q 018172 333 --REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 333 --~~e~~~~~~~~l~~~~~~~ 351 (360)
++||+++++++|+++.+++
T Consensus 340 ~~~~edv~~Lv~~l~~~~~~~ 360 (361)
T d2c0ra1 340 AVPYESCEALVQFMEHFKRSR 360 (361)
T ss_dssp TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 8999999999999988764
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.41 E-value=9.2e-12 Score=116.62 Aligned_cols=293 Identities=13% Similarity=0.025 Sum_probs=186.0
Q ss_pred HHHHHHHHHHH-hhcCCCC------CCCCcEEEcCChHHHHHHHHHhhcC----------CCCC-----CCceEEEeCCC
Q 018172 39 PELAEAINNLH-HVVDNAV------SDGRHIVIGTGSTQLYQAALYALSS----------PGGP-----EPISVVSAAPY 96 (360)
Q Consensus 39 ~~lr~~la~~~-~~~~~~~------~~~~~i~~t~G~t~~l~~~~~~l~~----------~gd~-----~~~~vl~~~p~ 96 (360)
.++++.+.+++ +..|.+- .....-++|+|+|+++...+....+ .|-. ....+++++-+
T Consensus 112 t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~ 191 (476)
T d1js3a_ 112 TELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA 191 (476)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccc
Confidence 56777776664 3444431 1223578999999998877755421 1111 01248899999
Q ss_pred CCCcHHHHHHhCCeeeeecCCccc-ccc-------------CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEe
Q 018172 97 YSQYPAETDYLRSGLYKWDGDANT-FDK-------------NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHD 161 (360)
Q Consensus 97 ~~~~~~~~~~~g~~~~~~~~~~~~-~~~-------------~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D 161 (360)
|.++..++..+|..+..++.|.++ ++. ...+.+|+.+..++.||.+-+ +++.++|+++++|+.+|
T Consensus 192 H~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVD 271 (476)
T d1js3a_ 192 HSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVD 271 (476)
T ss_dssp CHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEe
Confidence 999999999999999999877542 222 123556788888999999988 78889999999999999
Q ss_pred ecccCCCC-----Cc-CCCCCCccEEEeccccccCCCCceEEEEeecCHHHHHHH--------HHHHhh---------cc
Q 018172 162 LAYYWPQY-----TP-ITGAADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKM--------TRFIEL---------GS 218 (360)
Q Consensus 162 ~ay~~~~~-----~~-~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l--------~~~~~~---------~~ 218 (360)
.||++... .. +.+....+-+..++||.++. ....|.++.++....... ...... .+
T Consensus 272 AA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~-P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (476)
T d1js3a_ 272 AAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLV-NFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQ 350 (476)
T ss_dssp CTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSS
T ss_pred cccchhhhhhcchhhhhcCCcccceeeecCcccccc-CCcceeecccchHHHHHHHhcChhhhccccccccccccccccc
Confidence 99985321 11 11233457788899998774 446777777665544321 100000 00
Q ss_pred c-cCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCC
Q 018172 219 I-GVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESK 297 (360)
Q Consensus 219 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
. +.-......+...+..+ + ...+++..+...+..+++.+.|++.+++++..++.. +.+.++.+
T Consensus 351 ~~~sr~~~al~lw~~l~~~-G--~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l-------------~iV~Fr~~ 414 (476)
T d1js3a_ 351 LPLGRRFRSLKMWFVFRMY-G--VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTL-------------GLVCFRLK 414 (476)
T ss_dssp SCSCCCCTHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCS-------------SEEEEEES
T ss_pred cccchhhHHHHHHHHHHHH-h--HhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCce-------------EEEEEEcc
Confidence 0 01111112222333322 1 277778888888899999999999988877655322 23344443
Q ss_pred c--h--HHHHHHHHhhC-eeeeCCCCCCCCCCeEEEEecC---ChHHHHHHHHHHHHHHhc
Q 018172 298 E--D--EDCEKLLRAER-IMARGGRRFGADAKYARVSMLS---REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 298 ~--~--~~~~~~l~~~g-I~~~pg~~f~~~~~~~R~s~~~---~~e~~~~~~~~l~~~~~~ 350 (360)
. . +.+.+.|.+.| +++.+.. .+ +..++|+++.. ++++++.+++.|+++..+
T Consensus 415 ~~d~~n~~l~~~l~~~G~~~~s~t~-~~-g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ 473 (476)
T d1js3a_ 415 GSDGLNEALLERINSARKIHLVPCR-LR-GQFVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (476)
T ss_dssp SCHHHHHHHHHHHHHHTSCBCEEEE-ET-TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCEEEeeee-EC-CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 2 45666666766 4454422 12 24489999863 789999999999998765
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=1.9e-12 Score=121.61 Aligned_cols=297 Identities=12% Similarity=0.048 Sum_probs=170.9
Q ss_pred ccCCCCccccccHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCC-----CCceEEEeCCCCCCcH
Q 018172 27 LSDMGNVCWFLVPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGP-----EPISVVSAAPYYSQYP 101 (360)
Q Consensus 27 y~~~~g~~~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~-----~~~~vl~~~p~~~~~~ 101 (360)
|.....+ .+|++.+++++|. + .+++++++++++..++..++++|+. ....++.....|....
T Consensus 70 Y~~~~~~-----~~le~~~a~l~G~-------~-~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~ 136 (467)
T d2v1pa1 70 FSGSRSY-----YALAESVKNIFGY-------Q-YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQ 136 (467)
T ss_dssp SSSCHHH-----HHHHHHHHHHTCC-------S-EEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHH
T ss_pred hcCCchH-----HHHHHHHHHHHCC-------C-EEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccH
Confidence 5544444 8999999999995 3 6788888899999999998765543 0001444445555555
Q ss_pred HHHHHhCCeeeeecCCcc----------------cccc------CCCeeEEEEcCCCCCCc-ccch----HHHHHHhhhc
Q 018172 102 AETDYLRSGLYKWDGDAN----------------TFDK------NNGAYIEVVNSPNNPDG-TIRE----AVLAKVNRSA 154 (360)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~----------------~~~~------~~~~~~i~~~~p~NPtG-~~~~----~~~~~~~~~~ 154 (360)
..+...|..++.++.+.. .++. .+.++++++.+.+|..| ..++ +.+.++|++|
T Consensus 137 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~ 216 (467)
T d2v1pa1 137 GHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKY 216 (467)
T ss_dssp HHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHc
Confidence 667778999887765421 1111 13567788888887655 4444 5678899999
Q ss_pred CcEEEEeecccCCC-------CCcCCC----------CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHHhh-
Q 018172 155 EGKLIHDLAYYWPQ-------YTPITG----------AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFIEL- 216 (360)
Q Consensus 155 ~~~li~D~ay~~~~-------~~~~~~----------~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~- 216 (360)
|+++++|+++..+. ...... ....+++.+|.+|.++.+ ..|++++.++.+.......+..
T Consensus 217 g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~--~gg~i~~~~~~~~~~~~~~~~~~ 294 (467)
T d2v1pa1 217 DIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP--MGGLLCMKDDSFFDVYTECRTLC 294 (467)
T ss_dssp TCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS--SCEEEEECSGGGHHHHHHHHHHH
T ss_pred CCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCC--CceeEEecchhhhhHHHhhcccc
Confidence 99999999976310 111000 123567788889987643 3577777444443333222211
Q ss_pred ------cc-ccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCC
Q 018172 217 ------GS-IGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHP 289 (360)
Q Consensus 217 ------~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (360)
.. .+.+.....++...+..... ++..++..++.+++.+.|.+.+.. +..+. ....+.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~l~~~L~~~~~~-v~~~~-~~~~~~~~------ 360 (467)
T d2v1pa1 295 VVQEGFPTYGGLEGGAMERLAVGLYDGMN------LDWLAYRIAQVQYLVDGLEEIGVV-CQQAG-GHAAFVDA------ 360 (467)
T ss_dssp HHTTSSCCCCCCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHHHTTCC-EEEEC-SSCEEEEH------
T ss_pred cccccCcchhhhHHHHHHHHHHHhHHhhh------HHHHHHHHHHHHHHHHHHHhcCCc-ccCCC-ccceeecc------
Confidence 11 12333333333333332111 233344456677888888877432 22111 11111000
Q ss_pred CcccccCCc-----hHHHHHHHHhhCeeeeCCCCC------------CCCCCeEEEEecC---ChHHHHHHHHHHHHHHh
Q 018172 290 GFAWLESKE-----DEDCEKLLRAERIMARGGRRF------------GADAKYARVSMLS---REEIFNIFLERLSAIQG 349 (360)
Q Consensus 290 ~~~~~~~~~-----~~~~~~~l~~~gI~~~pg~~f------------~~~~~~~R~s~~~---~~e~~~~~~~~l~~~~~ 349 (360)
..+...... ...+.+++.+.||.......+ ......+||++.. ++|+||.++++|+++.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~ 440 (467)
T d2v1pa1 361 GKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_dssp HHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 001111111 155677888889865422110 1135679998743 88999999999999997
Q ss_pred chh
Q 018172 350 GSI 352 (360)
Q Consensus 350 ~~~ 352 (360)
+..
T Consensus 441 ~~~ 443 (467)
T d2v1pa1 441 NAA 443 (467)
T ss_dssp TGG
T ss_pred HHH
Confidence 543
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=1.3e-11 Score=114.17 Aligned_cols=268 Identities=9% Similarity=0.001 Sum_probs=162.4
Q ss_pred CCcEEEcCChHHHHHHHHHhhcC----CCCCCCceEEEeCCCCCCcHHHHHHh-CCe-------------eeeecCC---
Q 018172 59 GRHIVIGTGSTQLYQAALYALSS----PGGPEPISVVSAAPYYSQYPAETDYL-RSG-------------LYKWDGD--- 117 (360)
Q Consensus 59 ~~~i~~t~G~t~~l~~~~~~l~~----~gd~~~~~vl~~~p~~~~~~~~~~~~-g~~-------------~~~~~~~--- 117 (360)
.+.+.+++++++++..++..... .|.. +.+|+.-..+|......+... +.. ....+..
T Consensus 103 ~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~-~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
T d1s0aa_ 103 LECVFLADSGSVAVEVAMKMALQYWQAKGEA-RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSR 181 (429)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHHTCC-CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSB
T ss_pred cceeeeccccccchhhhhhhhhheeeccccc-ccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccc
Confidence 35799999999999988876631 1111 124777777776654333222 211 1111111
Q ss_pred ------cccccc--------CCCeeEEEEcCC-CCCCcccc-h----HHHHHHhhhcCcEEEEeecccCC-CCCcCCC--
Q 018172 118 ------ANTFDK--------NNGAYIEVVNSP-NNPDGTIR-E----AVLAKVNRSAEGKLIHDLAYYWP-QYTPITG-- 174 (360)
Q Consensus 118 ------~~~~~~--------~~~~~~i~~~~p-~NPtG~~~-~----~~~~~~~~~~~~~li~D~ay~~~-~~~~~~~-- 174 (360)
.+.+.. ..+..++++.-. .+--|... + +.+.++|+++|+++|.||++.+. .......
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~ 261 (429)
T d1s0aa_ 182 MDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACE 261 (429)
T ss_dssp C-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGG
T ss_pred cccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccc
Confidence 111110 234455555432 34445543 3 46788999999999999999853 3322221
Q ss_pred CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHH-----hhccccCChHHHHHHHHHhcccCCCchhHHHHHHH
Q 018172 175 AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI-----ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRR 249 (360)
Q Consensus 175 ~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (360)
..+..-=+.+++|.++-.++.+|.+++ .+++.+.+.... ...+++.|+++..++.+.|+.+.+. +. .+
T Consensus 262 ~~~v~PDi~~~gK~l~gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~--~~----~~ 334 (429)
T d1s0aa_ 262 HAEIAPDILCLGKALTGGTMTLSATLT-TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESG--DW----QQ 334 (429)
T ss_dssp GGTCCCSEEEECGGGGTSSSCCEEEEE-CHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTC--HH----HH
T ss_pred cceecccccccccccccccccccchhh-HHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccc--cc----cc
Confidence 111111244567988734488999998 899988875422 2357789999999999999877553 33 44
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeE
Q 018172 250 LMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYA 326 (360)
Q Consensus 250 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~ 326 (360)
..++.-+++.+.|+++....... .+++.+.+..+++... ..+.+.+.++|+.+.|. .+.+
T Consensus 335 ~~~~~g~~l~~~L~~l~~~~~v~-----------~vrg~Gl~~~~e~~~~~~~~~~~~~~~~~Gl~~~~~------g~~i 397 (429)
T d1s0aa_ 335 QVADIEVQLREQLAPARDAEMVA-----------DVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPF------GKLI 397 (429)
T ss_dssp HHHHHHHHHHHHHGGGGGCTTEE-----------EEEEETTEEEEEESSCBCHHHHHHHHHHTTEECCCB------TTEE
T ss_pred hhhHHHHHHHHHHHHhccCCceE-----------EEeecccEEEEEecCcccHHHHHHHHHHCCcEEEec------CCEE
Confidence 44444455556665441111100 1123344444554332 77888888999998873 3589
Q ss_pred EEE--ecCChHHHHHHHHHHHHHHhch
Q 018172 327 RVS--MLSREEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 327 R~s--~~~~~e~~~~~~~~l~~~~~~~ 351 (360)
||+ +..+++++++++++|.+.+++.
T Consensus 398 ~~~Ppl~it~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 398 YLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred EEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 997 4459999999999999998764
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.38 E-value=1.6e-12 Score=118.90 Aligned_cols=259 Identities=16% Similarity=0.101 Sum_probs=167.0
Q ss_pred CcEEEcCChHHHHHHHHHhhcCC-CCCCCceEEEeCCCCCCcHHHHHHh-CC------------eeeeecC-Ccccccc-
Q 018172 60 RHIVIGTGSTQLYQAALYALSSP-GGPEPISVVSAAPYYSQYPAETDYL-RS------------GLYKWDG-DANTFDK- 123 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~~-gd~~~~~vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~-~~~~~~~- 123 (360)
+.+.+++++++++..+++....- +.. +|+.-..+|......+... |. .+..+|. |.+.+..
T Consensus 97 ~~v~f~~sGseA~e~Aik~Ar~~t~r~---~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~ 173 (387)
T d1vefa1 97 NRVFPVNSGTEANEAALKFARAHTGRK---KFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRA 173 (387)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSCC---EEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHH
T ss_pred eeeccccCchHHHHHHHHHHHhhcccc---eecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCCCHHHHHHh
Confidence 46999999999999998876321 222 4888888777665444332 21 1122322 1222222
Q ss_pred -CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcCCC----CCCccEEEeccccccCCC
Q 018172 124 -NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPITG----AADHDIMLFTLSKCTGHA 192 (360)
Q Consensus 124 -~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~~~----~~~~~i~~~S~sK~~~~~ 192 (360)
+++.-+|++.--....|...+ +.+.++|+++|+++|.||++.+. ....... ....+ +.+++|.++ .
T Consensus 174 ~~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PD--i~~~gK~l~-g 250 (387)
T d1vefa1 174 VDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD--ILTLAKALG-G 250 (387)
T ss_dssp CCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS--EEEECGGGG-T
T ss_pred cCCCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCc--eeeecccCC-C
Confidence 345666666433444676644 46778999999999999999853 2222111 11223 345569888 7
Q ss_pred CceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCC
Q 018172 193 GSRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPE 272 (360)
Q Consensus 193 G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 272 (360)
|+-++.++. ..+.++.+.......+++.|+++..++.+.++.+.+ ++..++.+++-+++.+.|+++....+..
T Consensus 251 G~~~~~~~~-~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~------~~~~~~v~~~g~~l~~~L~~l~~~~v~~ 323 (387)
T d1vefa1 251 GVPLGVAVM-REEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLER------TRLWERAAELGPWFMEKLRAIPSPKIRE 323 (387)
T ss_dssp TSSCEEEEE-EHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH------HTTHHHHHHHHHHHHHHHHTSCCTTEEE
T ss_pred Ccccccccc-ceeeeeccccCCccccCCCCcchhhhcccchhhccc------ccccchHhhhhHHHHHHHHhcCCCceEE
Confidence 888888888 788888776665667788999999999998886543 2344555566667777777663211111
Q ss_pred CCCcccccccccCCCCCCcccccCCch--HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe--cCChHHHHHHHHHHHHHH
Q 018172 273 YPLEYCNFTGKFTNSHPGFAWLESKED--EDCEKLLRAERIMARGGRRFGADAKYARVSM--LSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~--~~~~e~~~~~~~~l~~~~ 348 (360)
+++.+.+..+.+++. ..+.+.+.++|+.+.+. .++.+|++. ..++++++++++++++++
T Consensus 324 ------------vrg~Gl~~~ie~~~~~~~~~~~~~~~~g~l~~~~-----g~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 324 ------------VRGMGLMVGLELKEKAAPYIARLEKEHRVLALQA-----GPTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp ------------EEEETTEEEEEESSCSHHHHHHHHHHHCEECEES-----STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ------------EeecceEEEEEEeCCchHHHHHHHHHCCCeEEec-----CCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 123333444555443 67778888889887752 245789874 349999999999999986
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=4.3e-12 Score=114.54 Aligned_cols=283 Identities=10% Similarity=-0.071 Sum_probs=162.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhh-cCCCCCCCceEEEeCCCCCCc--HHHHHHhCCeeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYAL-SSPGGPEPISVVSAAPYYSQY--PAETDYLRSGLYKW 114 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l-~~~gd~~~~~vl~~~p~~~~~--~~~~~~~g~~~~~~ 114 (360)
.++.|+.++++++.. .++.|++++|++++...+.... ..+++. +++..-.+... ...++..|..++..
T Consensus 48 ~~~~r~~l~~l~~~~-----~~~~v~~~~gs~t~~~~a~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (360)
T d1bjna_ 48 AEEAEKDFRDLLNVP-----SNYKVLFCHGGGRGQFAAVPLNILGDKTT----ADYVDAGYWAASAIKEAKKYCTPNVFD 118 (360)
T ss_dssp HHHHHHHHHHHHTCC-----TTEEEEEESSHHHHHHHHHHHHHCTTCCE----EEEEESSHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHhCCC-----CCCEEEEECCchHHHHhhhhhcccccccc----cceecccchhhhhHHHHhhcCccceee
Confidence 378899999999861 2336888888877776665544 454554 55554333322 23333345555443
Q ss_pred cCCcc--------ccccCCCeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccc
Q 018172 115 DGDAN--------TFDKNNGAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLS 186 (360)
Q Consensus 115 ~~~~~--------~~~~~~~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~s 186 (360)
..+.+ ......+++++++.+.+|-||...+... ..++.++..+++|.+.+.+..+ .+..+.++.+.|.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~-i~~~~~~~~v~vDa~~~~~~~~--vd~~~~dv~~~ss~ 195 (360)
T d1bjna_ 119 AKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDE-TPDFGADVVVAADFSSTILSRP--IDVSRYGVIYAGAQ 195 (360)
T ss_dssp CEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEECCC-CCCCCTTCCEEEECTTTTTSSC--CCGGGCSEEEEETT
T ss_pred ccccCCCcchhhhhhhhccCCceeEEEecccccccCccccc-eecccccceeeeeeecccccee--eeeccceeEEEEcc
Confidence 32211 1122467778777778888888866211 1245588999999987744333 23445688889999
Q ss_pred cccCCCCceEEEEeecCHHHHH------------HHHHHHhhccccCChHHHHHHHH-HhcccCCCchhHHHHHHHHHHH
Q 018172 187 KCTGHAGSRIGWALVKDTEVAR------------KMTRFIELGSIGVSKESQLRAAK-ILGIVSDDYPNFFEYGRRLMSE 253 (360)
Q Consensus 187 K~~~~~G~r~G~~~~~~~~~~~------------~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~ 253 (360)
|.++.++- .|+++..+ ...+ ....... .....+......+.. .+..... ...+...++..+
T Consensus 196 k~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 269 (360)
T d1bjna_ 196 KNIGPAGL-TIVIVRED-LLGKANIACPSILDYSILNDNGS-MFNTPPTFAWYLSGLVFKWLKAN---GGVAEMDKINQQ 269 (360)
T ss_dssp TTTSSTTC-EEEEEEGG-GCSCCCTTSCGGGCHHHHHHTTT-CSSCCCHHHHHHHHHHHHHHHHT---THHHHHHHHHHH
T ss_pred cccccCCC-ceeEeeeh-hhhhccccCCcchhhHHHHhhhh-hccccccchHHHHHHHHHHHhhh---hhHHHHHHHHHH
Confidence 98886553 34444322 1110 0111111 112222222222222 2221111 455566666666
Q ss_pred HHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEe
Q 018172 254 RWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSM 330 (360)
Q Consensus 254 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~ 330 (360)
...++...+.............. ++.+ .+.+.++++ +.+.+.|+++||.++.|..- -+.+|+|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~---------rs~~-v~~f~~~~~~~~~~~~~~l~~~Gi~~~~G~~~---~g~~Ris~ 336 (360)
T d1bjna_ 270 KAELLYGVIDNSDFYRNDVAKRN---------RSRM-NVPFQLADSALDKLFLEESFAAGLHALKGHRV---VGGMRASI 336 (360)
T ss_dssp HHHHHHHHHHHCSSEECCBCGGG---------BCSS-EEEEEESSGGGHHHHHHHHHHTTEECCBCCTT---TCSEEEEC
T ss_pred HHHHHHHhhhccccccccCCccc---------ccce-EEEEEcCCcccHHHHHHHHHHCCCEeecCCCc---cCeEEEEe
Confidence 66666666666654444333221 1222 234555554 77888999999999887421 23599998
Q ss_pred cC--ChHHHHHHHHHHHHHHhch
Q 018172 331 LS--REEIFNIFLERLSAIQGGS 351 (360)
Q Consensus 331 ~~--~~e~~~~~~~~l~~~~~~~ 351 (360)
.. ++||+++++++|+++.++.
T Consensus 337 ~~~~t~edV~~li~~l~e~~~~~ 359 (360)
T d1bjna_ 337 YNAMPLEGVKALTDFMVEFERRH 359 (360)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHc
Confidence 55 8999999999999987643
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.37 E-value=1.9e-10 Score=104.93 Aligned_cols=258 Identities=13% Similarity=0.073 Sum_probs=175.0
Q ss_pred CChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----------HHHhCCeeeeecCCcccccc----------CC
Q 018172 66 TGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----------TDYLRSGLYKWDGDANTFDK----------NN 125 (360)
Q Consensus 66 ~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----------~~~~g~~~~~~~~~~~~~~~----------~~ 125 (360)
.+++.+...++.+|++|||+ |+...........- +.....+...++++.+.... ..
T Consensus 104 ~SGs~An~av~~all~pgD~----im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~ 179 (470)
T d1rv3a_ 104 YSGSPANFAVYTALVEPHGR----IMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLF 179 (470)
T ss_dssp SSHHHHHHHHHHHHTCTTCE----EEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHhcCCCCe----EeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhh
Confidence 56788889999999999998 99887666555332 22234566677766553322 24
Q ss_pred CeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccC------CCCCcCCCCCCccEEEeccccccCCCCceEEEE
Q 018172 126 GAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYW------PQYTPITGAADHDIMLFTLSKCTGHAGSRIGWA 199 (360)
Q Consensus 126 ~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~------~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~ 199 (360)
++++|++..-.+|-=.- -+.++++|++-|.+++.|.+|.. ....|+. ..+++.+|.+|+| +|=|.|.|
T Consensus 180 kPklIi~G~S~y~r~~d-~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~---~aDvvt~tTHKtl--rGPrgGiI 253 (470)
T d1rv3a_ 180 HPKLIIAGTSCYSRNLD-YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE---HCHVVTTTTHKTL--RGCRAGMI 253 (470)
T ss_dssp CCSEEEECCSSCCSCCC-HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG---TCSEEEEESSGGG--CCCSCEEE
T ss_pred CcceEeechhhccccCC-HHHHHHHHhccCCeEEecchhhhhhccccccCChhh---eeeeeeeehhhhc--cCCcceEE
Confidence 88999987655432221 16788889999999999999972 2234442 3489999999998 46667988
Q ss_pred eecCH--------------HHHHHHHHHHhhccccCChHHHHHHHH-HhcccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 018172 200 LVKDT--------------EVARKMTRFIELGSIGVSKESQLRAAK-ILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQ 264 (360)
Q Consensus 200 ~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (360)
.+.++ ++.+.+.+....+..+.+.+.+.++.+ ++..... .......+++..+.+.|.+.|.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~---~~fk~Ya~qvv~NAk~La~~L~~ 330 (470)
T d1rv3a_ 254 FYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMT---PEFKEYQRQVVANCRALSAALVE 330 (470)
T ss_dssp EEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHHHHHHHHh
Confidence 87432 477888777655555665565555555 5554332 56778888889999999999998
Q ss_pred cCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeee----CCCCCCCCCCeEEEEec-----
Q 018172 265 SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMAR----GGRRFGADAKYARVSML----- 331 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~----pg~~f~~~~~~~R~s~~----- 331 (360)
.+ +.+.. |+ ...-.+++++.. +..+.+.|.+.||.+. |+..-...+..+||+..
T Consensus 331 ~G-~~v~~--gg----------TdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtr 397 (470)
T d1rv3a_ 331 LG-YKIVT--GG----------SDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSR 397 (470)
T ss_dssp TT-CEEGG--GS----------CSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHT
T ss_pred CC-ceecc--CC----------CCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhC
Confidence 85 34321 11 111145666642 2789999999999874 54432224668999852
Q ss_pred -CChHHHHHHHHHHHHHHh
Q 018172 332 -SREEIFNIFLERLSAIQG 349 (360)
Q Consensus 332 -~~~e~~~~~~~~l~~~~~ 349 (360)
..+++++++.+.|.+++.
T Consensus 398 G~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 398 GLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 178999999888888874
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.36 E-value=2.8e-12 Score=116.07 Aligned_cols=285 Identities=11% Similarity=-0.033 Sum_probs=154.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCC-cEEEcCChHHHHHHHHHhhc-CCCCCCCceEEEeCCCCCCc--HHHHHHhCCeeee
Q 018172 38 VPELAEAINNLHHVVDNAVSDGR-HIVIGTGSTQLYQAALYALS-SPGGPEPISVVSAAPYYSQY--PAETDYLRSGLYK 113 (360)
Q Consensus 38 ~~~lr~~la~~~~~~~~~~~~~~-~i~~t~G~t~~l~~~~~~l~-~~gd~~~~~vl~~~p~~~~~--~~~~~~~g~~~~~ 113 (360)
.++.|+.++++++. +++ .|++++|++++...+..... ..++. +++....+... ...+...+...+.
T Consensus 50 ~~~~r~~l~~l~~~------~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~----v~~~~~g~~~~~~~~~~~~~~~~~~~ 119 (360)
T d1w23a_ 50 HEQAQNLLRELLQI------PNDYQILFLQGGASLQFTMLPMNLLTKGTI----GNYVLTGSWSEKALKEAKLLGETHIA 119 (360)
T ss_dssp HHHHHHHHHHHHTC------CTTEEEEEESSHHHHHHHHHHHHHCCTTCE----EEEEECSHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhCC------CCCCEEEEeCCcHHHHHHHHHhhhcccCcc----cceeeccchhhhhHHHHHHhhhccee
Confidence 37899999999986 333 68888888888776655554 44554 65554333322 2334444555544
Q ss_pred ecCCcccc-cc---CCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccc
Q 018172 114 WDGDANTF-DK---NNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKC 188 (360)
Q Consensus 114 ~~~~~~~~-~~---~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~ 188 (360)
+....... .. +...+.+.+.+-+|-||...+ +.+.++|+++|+++++|.+.+.++.+...+..+.+++.++-.|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k- 198 (360)
T d1w23a_ 120 ASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNL- 198 (360)
T ss_dssp EECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTT-
T ss_pred eccccccccchhhhhhcccccccceeEecCCccccceeeeeccccceeeEEeeccccccccccccccccceEEeecccc-
Confidence 43222111 11 111122222233456888877 5566778889999999999998777766666666655555444
Q ss_pred cCCCCceEEEEeecCHHHHHHH---------H--HHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH
Q 018172 189 TGHAGSRIGWALVKDTEVARKM---------T--RFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNM 257 (360)
Q Consensus 189 ~~~~G~r~G~~~~~~~~~~~~l---------~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (360)
+++|. .|+++. .+...+.. . ..........+.....+....+....+. .......++.......
T Consensus 199 -~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 273 (360)
T d1w23a_ 199 -GPSGV-TVVIVK-KDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDL--GGAEAIAKQNEEKAKI 273 (360)
T ss_dssp -SCTTC-EEEEEE-HHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHH
T ss_pred -ccCCc-ceeeEe-chhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhh--hhhHHHHHHHHHHHHH
Confidence 43332 344443 22221110 0 0011112223333222222222211111 3333344444444444
Q ss_pred HHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEEecC--
Q 018172 258 LRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVSMLS-- 332 (360)
Q Consensus 258 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s~~~-- 332 (360)
.................. ..++.+ -+.+.++++ +.+.+.|.++||.++.|+.. -+.+|+|+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~--------~~rS~~-vvsf~i~~~~~~~~~~~~l~~~GI~~~~G~~~---~ggiRiS~~~~~ 341 (360)
T d1w23a_ 274 IYDTIDESNGFYVGHAEK--------GSRSLM-NVTFNLRNEELNQQFLAKAKEQGFVGLNGHRS---VGGCRASIYNAV 341 (360)
T ss_dssp HHHHHHTTTTSSEESSCG--------GGBCSS-EEEEECSSHHHHHHHHHHHHHTTEESCBCCTT---TCSEEEECCTTS
T ss_pred HHHHHhhcccccccCCCh--------hhccee-EEEEEcCCCccHHHHHHHHHHCCCeeeeCCCc---cCcEEEEeeCCC
Confidence 444444433222211111 111222 345666664 67788899999999888533 2359999855
Q ss_pred ChHHHHHHHHHHHHHHhc
Q 018172 333 REEIFNIFLERLSAIQGG 350 (360)
Q Consensus 333 ~~e~~~~~~~~l~~~~~~ 350 (360)
+.|+++++++.|+++.+.
T Consensus 342 t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 342 PIDACIALRELMIQFKEN 359 (360)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 899999999999998753
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.32 E-value=4.6e-11 Score=110.76 Aligned_cols=269 Identities=12% Similarity=0.027 Sum_probs=165.3
Q ss_pred CcEEEcCChHHHHHHHHHhhcC-CCCCCCceEEEeCCCCCCcHHHHHHhCCee------------eeecCCcc-------
Q 018172 60 RHIVIGTGSTQLYQAALYALSS-PGGPEPISVVSAAPYYSQYPAETDYLRSGL------------YKWDGDAN------- 119 (360)
Q Consensus 60 ~~i~~t~G~t~~l~~~~~~l~~-~gd~~~~~vl~~~p~~~~~~~~~~~~g~~~------------~~~~~~~~------- 119 (360)
+.+.+++++++|+..+++.... .|.. +|+.-+-.|......+-..+... ..++....
T Consensus 101 ~~v~f~~sGseA~e~Alk~Ar~~t~r~---~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (431)
T d1zoda1 101 DRALLLSTGAESNEAAIRMAKLVTGKY---EIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFER 177 (431)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHHTCC---EEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEE
T ss_pred ceeeecccccchHHHHHHHHHHhcCCc---ceeecccccccccchhhcccccccccccCCcccCceeeeeeccccccccc
Confidence 5899999999999999887632 1222 37777777777665544332111 11111100
Q ss_pred --------ccc--------c-CCCeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccC-CCCCcCCC--
Q 018172 120 --------TFD--------K-NNGAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYW-PQYTPITG-- 174 (360)
Q Consensus 120 --------~~~--------~-~~~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~-~~~~~~~~-- 174 (360)
.++ . ..+..++++.--..--|.+.+ +.+.++|+++|+++|.||++.+ +.......
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~ 257 (431)
T d1zoda1 178 NGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQ 257 (431)
T ss_dssp TTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHH
T ss_pred ccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccc
Confidence 000 0 123445555433333555543 5778999999999999999985 33222221
Q ss_pred CCCccEEEeccccccCCCCceEEEEeecCHHHHHHHHHHH--hhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHH
Q 018172 175 AADHDIMLFTLSKCTGHAGSRIGWALVKDTEVARKMTRFI--ELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMS 252 (360)
Q Consensus 175 ~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 252 (360)
..+..-=+.+++|.++ .|+.++.+++ ..+..+...... ...+++.++++..++.+.++.+.+. ..+++..+.-.
T Consensus 258 ~~gv~PDi~~~gK~l~-gG~p~~av~~-~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~--~~~~~~~~~g~ 333 (431)
T d1zoda1 258 RDGVTPDILTLSKTLG-AGLPLAAIVT-SAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD--GLVARANVMGD 333 (431)
T ss_dssp HHTCCCSEEEECHHHH-TTSSCEEEEE-CHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHT--THHHHHHHHHH
T ss_pred cCCCCcchhccccccc-cccccceeee-eecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhh--hhhHHHHHHHH
Confidence 1111111445679998 8888898888 787777765432 2356789999999998888866554 66666666666
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccC--------Cc--h-HHHHHHHHhhCeeeeCCCCCCC
Q 018172 253 ERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLES--------KE--D-EDCEKLLRAERIMARGGRRFGA 321 (360)
Q Consensus 253 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~-~~~~~~l~~~gI~~~pg~~f~~ 321 (360)
..++.+.+.+.+++.+.-+.-.|.+ ..+.+ +. . ..+.+.+.++|+....-. .+.
T Consensus 334 ~l~~~l~~~~~~~~~i~~vrG~Glm--------------~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~-~~~ 398 (431)
T d1zoda1 334 RLRRGLLDLMERFDCIGDVRGRGLL--------------LGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQ-LPG 398 (431)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEETTE--------------EEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEEC-CTT
T ss_pred HHhhhhhhhhhcCCCeEEEeecceE--------------EEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeee-ecC
Confidence 6666677777777643322222322 22222 11 1 556777888898643211 112
Q ss_pred CCCeEEEEe--cCChHHHHHHHHHHHHHHhc
Q 018172 322 DAKYARVSM--LSREEIFNIFLERLSAIQGG 350 (360)
Q Consensus 322 ~~~~~R~s~--~~~~e~~~~~~~~l~~~~~~ 350 (360)
..+.+|++. ..+++++++++++|.+++++
T Consensus 399 ~~~~i~l~Ppl~it~~eid~~~~~l~~al~~ 429 (431)
T d1zoda1 399 MGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429 (431)
T ss_dssp SCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 356899975 34999999999999999875
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.28 E-value=2e-10 Score=104.59 Aligned_cols=258 Identities=13% Similarity=0.085 Sum_probs=162.0
Q ss_pred CChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHHH--------HHhC--CeeeeecCCcccccc----------CC
Q 018172 66 TGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAET--------DYLR--SGLYKWDGDANTFDK----------NN 125 (360)
Q Consensus 66 ~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~~--------~~~g--~~~~~~~~~~~~~~~----------~~ 125 (360)
.+++.+...++.+|++|||+ |+...+.......-- ...| .+...+..|.+.... ..
T Consensus 100 ~SGs~An~av~~all~pgD~----Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~ 175 (463)
T d2a7va1 100 YSGSPANLAVYTALLQPHDR----IMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLF 175 (463)
T ss_dssp SSHHHHHHHHHHHHCCSCEE----CCC-------------------------------CCBCTTTCSBCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCCce----EEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhc
Confidence 45688889999999999998 887766655553221 1112 234444444332222 25
Q ss_pred CeeEEEEcCCCCCCcccchHHHHHHhhhcCcEEEEeecccC-----C-CCCcCCCCCCccEEEeccccccCCCCceEEEE
Q 018172 126 GAYIEVVNSPNNPDGTIREAVLAKVNRSAEGKLIHDLAYYW-----P-QYTPITGAADHDIMLFTLSKCTGHAGSRIGWA 199 (360)
Q Consensus 126 ~~~~i~~~~p~NPtG~~~~~~~~~~~~~~~~~li~D~ay~~-----~-~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~ 199 (360)
++|+|++..-.+|-=.-+ +.++++|++-|.+++.|.+|.. + ...|+ ...+++.+|.+|+| +|=|.|.|
T Consensus 176 kPklIi~G~S~y~r~~d~-~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~---~~aDvvt~tTHKTl--rGPrgGiI 249 (463)
T d2a7va1 176 RPRLIIAGTSAYARLIDY-ARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KHADIVTTTTHKTL--RGARSGLI 249 (463)
T ss_dssp CCSEEEECCSSCCSCCCH-HHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG---GTCSEEEEESSGGG--CSCSCEEE
T ss_pred CCceEEecccccccccCH-HHHHHHhhcccceEEechhhhhHHhhhhhhcChh---hhhhhhhchhhhhh--cCCCceEE
Confidence 889999876554432221 6788889989999999999972 2 23333 23589999999998 46677988
Q ss_pred eecCH--------------HHHHHHHHHHhhccccCChHHHHHHHH-HhcccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 018172 200 LVKDT--------------EVARKMTRFIELGSIGVSKESQLRAAK-ILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQ 264 (360)
Q Consensus 200 ~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (360)
.+.++ ++.+.+.+....+..+.+.+.+.++.+ ++..... .......+++.++.+.|.+.|.+
T Consensus 250 l~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~---~~fk~Ya~qVv~NAk~La~~L~~ 326 (463)
T d2a7va1 250 FYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACT---PMFREYSLQVLKNARAMADALLE 326 (463)
T ss_dssp EEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHh
Confidence 88432 677788776655555666666555544 4443222 66778888888999999999998
Q ss_pred cCCcccCCCCCcccccccccCCCCCCcccccCCc----hHHHHHHHHhhCeeee----CCCCCCCCCCeEEEEecC----
Q 018172 265 SGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKE----DEDCEKLLRAERIMAR----GGRRFGADAKYARVSMLS---- 332 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~----pg~~f~~~~~~~R~s~~~---- 332 (360)
.+ +.+.. |+ ...-.+++++.. +..+.+.|.+.||.+. |+..-...+..+||+...
T Consensus 327 ~G-~~vv~--gg----------TdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~Ttr 393 (463)
T d2a7va1 327 RG-YSLVS--GG----------TDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSR 393 (463)
T ss_dssp TT-CEEGG--GS----------CSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHT
T ss_pred CC-Ceeec--CC----------CCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhC
Confidence 85 34331 11 111145677643 2889999999999975 443222245679998622
Q ss_pred --ChHHHHHHHHHHHHHHh
Q 018172 333 --REEIFNIFLERLSAIQG 349 (360)
Q Consensus 333 --~~e~~~~~~~~l~~~~~ 349 (360)
.++|++++.+.|.+++.
T Consensus 394 G~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 394 QFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 67999999998888774
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.23 E-value=7.9e-11 Score=109.94 Aligned_cols=197 Identities=15% Similarity=0.126 Sum_probs=121.6
Q ss_pred CeeEEEEcCCCCCCcccch-----HHHHHHhhhcCcEEEEeecccCC-CCCcCCC--CC----CccEEEeccccccCCCC
Q 018172 126 GAYIEVVNSPNNPDGTIRE-----AVLAKVNRSAEGKLIHDLAYYWP-QYTPITG--AA----DHDIMLFTLSKCTGHAG 193 (360)
Q Consensus 126 ~~~~i~~~~p~NPtG~~~~-----~~~~~~~~~~~~~li~D~ay~~~-~~~~~~~--~~----~~~i~~~S~sK~~~~~G 193 (360)
+.-+|++..-+...|...+ +.+.++|+++|+++|.||++.+. ....... .. .-+++ +++|.++ .
T Consensus 248 ~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv--~~gK~l~-~- 323 (461)
T d1ohwa_ 248 TVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMM-T- 323 (461)
T ss_dssp CEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEE--EECGGGS-S-
T ss_pred ccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhh--hhhhccc-c-
Confidence 4555666555556676654 46778999999999999999853 2211111 11 12333 6779876 3
Q ss_pred ceEEEEeecCHHHHHHHHHHHhhccccCChHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q 018172 194 SRIGWALVKDTEVARKMTRFIELGSIGVSKESQLRAAKILGIVSDDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEY 273 (360)
Q Consensus 194 ~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 273 (360)
|++.. ...+ ..-.......+++.++++..++.+.|+.+.+. ..+++.++.=+..++.+.+...+++.+. .
T Consensus 324 ---g~~~~-~~~~-~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~--~l~~~~~~~g~~l~~~l~~l~~~~~~~i-~-- 393 (461)
T d1ohwa_ 324 ---GGFFH-KEEF-RPNAPYRIFNTWLGDPSKNLLLAEVINIIKRE--DLLSNAAHAGKVLLTGLLDLQARYPQFI-S-- 393 (461)
T ss_dssp ---EEEEE-CGGG-SCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHHHCTTTC-E--
T ss_pred ---ccccc-cccc-ccccccccccccccccccchhhcccchhhhhh--hHHHHHHHHHHHHHHHHHHHHhhCCCce-E--
Confidence 44444 2221 11112223456788899999999988876543 4444444443334444444444443211 0
Q ss_pred CCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCCCCCCCCeEEEE--ecCChHHHHHHHHHHHHHH
Q 018172 274 PLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRRFGADAKYARVS--MLSREEIFNIFLERLSAIQ 348 (360)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~f~~~~~~~R~s--~~~~~e~~~~~~~~l~~~~ 348 (360)
.+++.|.++.+++++. ..+...+.++|+.+.+.. ++.+||. +..++++++.++++|.+++
T Consensus 394 ----------~vrG~Gl~~~ie~~~~~~~~~i~~~~~~~Gll~~~~~-----~~~ir~~PpL~it~~eid~~~~~l~~~l 458 (461)
T d1ohwa_ 394 ----------RVRGRGTFCSFDTPDESIRNKLISIARNKGVMLGGCG-----DKSIRFRPTLVFRDHHAHLFLNIFSDIL 458 (461)
T ss_dssp ----------EEEEETTEEEEECSSHHHHHHHHHHHHHTTEECEEET-----TTEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred ----------EeeeeeEEEEEEcCCHHHHHHHHHHHHHCCeEEeeCC-----CCEEEEeCCcCCCHHHHHHHHHHHHHHH
Confidence 1224445666777765 567788889999998732 4688986 3449999999999999998
Q ss_pred hch
Q 018172 349 GGS 351 (360)
Q Consensus 349 ~~~ 351 (360)
.++
T Consensus 459 ~ef 461 (461)
T d1ohwa_ 459 ADF 461 (461)
T ss_dssp HTC
T ss_pred hcC
Confidence 763
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.22 E-value=2.4e-10 Score=104.71 Aligned_cols=282 Identities=16% Similarity=0.103 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhcCCCCCCCceEEEeCCCCCCcHHH----HHHhCCeeeee
Q 018172 39 PELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALSSPGGPEPISVVSAAPYYSQYPAE----TDYLRSGLYKW 114 (360)
Q Consensus 39 ~~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~~~gd~~~~~vl~~~p~~~~~~~~----~~~~g~~~~~~ 114 (360)
-++.+.+++.-|.... +.-.-.|++.....++......+.. +++++.-+++.+... ++..|++++.+
T Consensus 111 ~e~q~~l~eltGmd~~------n~s~~~ga~a~~~~~~~~~~~~~~~---~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v 181 (437)
T d1wyua1 111 FEYQTMIAELAGLEIA------NASMYDGATALAEGVLLALRETGRM---GVLVSQGVHPEYRAVLRAYLEAVGAKLLTL 181 (437)
T ss_dssp HHHHHHHHHHHTSSEE------CSCBSSHHHHHHHHHHHHHHHHTCC---EEEEETTSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhhCCCcc------ccCchHHHHHHHHHHHHHHhhhccc---ccccccccChHHhhhhhhhcccceeeEEee
Confidence 4566666666665211 2223356666665555444322222 499999888876655 45579999999
Q ss_pred cCCccccc---cCCCeeEEEEcCCCCCCcccch-HHHHHHhhhcCcEEEEeecccCCCCCcCCCCCCccEEEeccccccC
Q 018172 115 DGDANTFD---KNNGAYIEVVNSPNNPDGTIRE-AVLAKVNRSAEGKLIHDLAYYWPQYTPITGAADHDIMLFTLSKCTG 190 (360)
Q Consensus 115 ~~~~~~~~---~~~~~~~i~~~~p~NPtG~~~~-~~~~~~~~~~~~~li~D~ay~~~~~~~~~~~~~~~i~~~S~sK~~~ 190 (360)
+.+..+.. .++++.++++.+||. .|.+-+ +.+..++++.|.+++.|..-..-....-++..+.++++++ +|.||
T Consensus 182 ~~~~~~~~~~~~~~~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg 259 (437)
T d1wyua1 182 PLEGGRTPLPEVGEEVGAVVVQNPNF-LGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLG 259 (437)
T ss_dssp CCBTTBCCCCCCCTTEEEEEEESSCT-TSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTT
T ss_pred ecccccchhhhhccceeEEEEccccc-cccccchHHHHHHhhhccceEEeeechhhhhccccccccccceEeec-cceec
Confidence 87654332 257899999999964 788865 5566667768887666532111111112345677888887 66665
Q ss_pred CC----CceEEEEeecCHHHHHHH----------------------------HHHHhhcccc-CChHHHHHHHHHhcccC
Q 018172 191 HA----GSRIGWALVKDTEVARKM----------------------------TRFIELGSIG-VSKESQLRAAKILGIVS 237 (360)
Q Consensus 191 ~~----G~r~G~~~~~~~~~~~~l----------------------------~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 237 (360)
.| |=..|++.+ .+++.+.+ ++.+.....+ .+.+....+...+..+
T Consensus 260 ~p~g~GGP~~G~~a~-~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~l- 337 (437)
T d1wyua1 260 LPMGFGGPHFGFLAT-KKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL- 337 (437)
T ss_dssp CCCGGGCSCCEEEEE-CGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH-
T ss_pred cccCCCcCccccccc-cchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhc-
Confidence 32 112477777 55554443 2222211222 2233333333333322
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch-HHHHHHHHhhCeeeeCC
Q 018172 238 DDYPNFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED-EDCEKLLRAERIMARGG 316 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gI~~~pg 316 (360)
+ .+-+.++.++...+..++.+.|.+++++....+...+-. +.++++.. .++.+.|.++|+...-
T Consensus 338 G--~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~e------------f~v~~~~~~~~i~k~L~d~G~~~~~- 402 (437)
T d1wyua1 338 G--PEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNE------------FALALPKDPEAVRRALAERGFHGAT- 402 (437)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSE------------EEEECSSCHHHHHHHHHHTTCCCCE-
T ss_pred C--cccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeE------------EEEECCCCHHHHHHHHHhCCCCCCc-
Confidence 2 267889999999999999999999877765433222111 23455433 8888999999996311
Q ss_pred CCCC-CCCCeEEEEecC--ChHHHHHHHHHHHHHH
Q 018172 317 RRFG-ADAKYARVSMLS--REEIFNIFLERLSAIQ 348 (360)
Q Consensus 317 ~~f~-~~~~~~R~s~~~--~~e~~~~~~~~l~~~~ 348 (360)
..|. ..++.+.++++- ++|++|+++++|++++
T Consensus 403 ~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 403 PVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp ECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 1121 136788999864 8999999999999875
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.74 E-value=2.8e-07 Score=84.96 Aligned_cols=288 Identities=15% Similarity=0.072 Sum_probs=165.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHhhc---CCCCCCCceEEEeCCCCCCc-HHHHHHhCCeeeeec
Q 018172 40 ELAEAINNLHHVVDNAVSDGRHIVIGTGSTQLYQAALYALS---SPGGPEPISVVSAAPYYSQY-PAETDYLRSGLYKWD 115 (360)
Q Consensus 40 ~lr~~la~~~~~~~~~~~~~~~i~~t~G~t~~l~~~~~~l~---~~gd~~~~~vl~~~p~~~~~-~~~~~~~g~~~~~~~ 115 (360)
++...++++.|. +-.|.-.-.|+|.....++.+.. +.+......++...+.+... .......+..++.++
T Consensus 110 EfQtmi~eLTGM------dvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (471)
T d1wyub1 110 ELGEYLKALTGM------DAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIP 183 (471)
T ss_dssp HHHHHHHHHHTC------SEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhCC------CccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeecccceeeccc
Confidence 455666666664 11122233566655555444431 22322222245555555544 455566677877776
Q ss_pred CCcccccc--------CCCeeEEEEcCCCCCCcccch--HHHHHHhhhcCcEEEEeecccCCCC-CcCCCCCCccEEEec
Q 018172 116 GDANTFDK--------NNGAYIEVVNSPNNPDGTIRE--AVLAKVNRSAEGKLIHDLAYYWPQY-TPITGAADHDIMLFT 184 (360)
Q Consensus 116 ~~~~~~~~--------~~~~~~i~~~~p~NPtG~~~~--~~~~~~~~~~~~~li~D~ay~~~~~-~~~~~~~~~~i~~~S 184 (360)
.+..+... +.++.++++.+||++ |..-. +.+.+++++.+..+++|-+-..... ..-+...+.++++..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~-g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg 262 (471)
T d1wyub1 184 SGPEGEVDLEALKRELGPHVAALMLTNPNTL-GLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLN 262 (471)
T ss_dssp BCTTSSBCHHHHHHHCSTTEEEEEECSSCTT-SCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECC
T ss_pred ccccccccchhhhhhhhccccceeeccCCCc-ccccchhhhhHHHHHhccccccccccchhhhhhccccCcccccccccc
Confidence 55332221 467788999999864 44433 5566666668888888765321111 111123445666666
Q ss_pred cccccCCC----CceEEEEeecCHHHHHHHHH----------------H---HhhccccCChHHHHHHHHHhcccCCCch
Q 018172 185 LSKCTGHA----GSRIGWALVKDTEVARKMTR----------------F---IELGSIGVSKESQLRAAKILGIVSDDYP 241 (360)
Q Consensus 185 ~sK~~~~~----G~r~G~~~~~~~~~~~~l~~----------------~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (360)
.++.||.| |--+|++.+ .+++++.+-- - ++....+.+.+...++...+..+ + .
T Consensus 263 ~~q~~G~P~~~GGP~~G~~a~-~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsll-G--~ 338 (471)
T d1wyub1 263 LHKTFTVPHGGGGPGSGPVGV-KAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTL-G--L 338 (471)
T ss_dssp TTTTTCCCCTTSCCCCCCEEE-CGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHH-H--H
T ss_pred cccccccccccccccccceee-hhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHh-C--c
Confidence 66656542 333678877 6776665520 0 01111223344444444444433 3 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccccccccCCCCCCcccccCCch---HHHHHHHHhhCeeeeCCCC
Q 018172 242 NFFEYGRRLMSERWNMLRQVIRQSGVFGLPEYPLEYCNFTGKFTNSHPGFAWLESKED---EDCEKLLRAERIMARGGRR 318 (360)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gI~~~pg~~ 318 (360)
+-+.++.+..-++..++.+.|+. +++.+......+-. +.++++.+ .++.+.|.++|+.- |...
T Consensus 339 ~GL~elA~~~~~~A~Yla~~L~~-~G~~~~~~~~ff~E------------Fvv~~~~~~~~~~i~k~L~~~G~~~-~~~~ 404 (471)
T d1wyub1 339 EGLKKAAALAVLNARYLKELLKE-KGYRVPYDGPSMHE------------FVAQPPEGFRALDLAKGLLELGFHP-PTVY 404 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TTCBCSSCSSCCSC------------EEEBCSTTCCHHHHHHHHHHTTCCC-CEES
T ss_pred hhHHHHHHHHHHHHHHHHHHHhh-cCceeccCcceeeE------------EeecCCCCCCHHHHHHHHHHcCCCC-Cccc
Confidence 88999999999999999999976 46665432221111 23455443 66788888999853 3233
Q ss_pred CC-CCCCeEEEEecC--ChHHHHHHHHHHHHHHhchh
Q 018172 319 FG-ADAKYARVSMLS--REEIFNIFLERLSAIQGGSI 352 (360)
Q Consensus 319 f~-~~~~~~R~s~~~--~~e~~~~~~~~l~~~~~~~~ 352 (360)
|. ..++.+-++++- ++||||+++++|++++++.+
T Consensus 405 ~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~ 441 (471)
T d1wyub1 405 FPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPK 441 (471)
T ss_dssp CSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCH
T ss_pred CcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 32 246678888855 89999999999999998765
|